Osteoglossocephalai	ANCESTRAL SPECIES	128	ENSGT00940000167287	ENSGT00940000160257	ENSGT00940000164506.b.b	ENSGT00950000182917.a.b.b	ENSGT00390000013719	ENSGT00950000182916.a.b.a.a.a.b.a.b	ENSGT00940000177692	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195.b	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00390000005605	ENSGT00390000005584	ENSGT01050000244887.A.a.a.a	ENSGT00940000157140.b.b.a
Clupeocephala	ANCESTRAL SPECIES	396								ENSGT00940000154277.b.b.a	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24
Otomorpha	ANCESTRAL SPECIES	4	ENSGT00940000153510.a	ENSGT00940000161425	ENSGT00390000010231	ENSGT00940000156057.s.a	ENSGT00940000156448.a.a	ENSGT00940000160049 #14	ENSGT00390000016730 #15	ENSGT00940000162556.E.a	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.b	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT01030000234881	ENSGT00390000017673.b.k #31	ENSGT00390000006009.b #32	ENSGT00940000156865.a #33	ENSGT00710000107036.a.b #34	ENSGT00930000151058 #35
Clupeiformes	ANCESTRAL SPECIES	52	ENSGT00390000007786.a.a	ENSGT00940000153510.a	ENSGT00940000161425	ENSGT00390000010231	ENSGT00940000156057.s.a	ENSGT00940000156448.a.a	ENSGT00940000160049 #14	ENSGT00390000016730 #15	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143.h ##25	ENSGT00470000042444	ENSGT00940000157140.b.b.b	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT01030000234881	ENSGT00390000017673.b.k #31	ENSGT00390000006009.b #32	ENSGT00940000156865.a #33	ENSGT00710000107036.a.b #34	ENSGT00930000151058 #35
Denticle herring	MODERN SPECIES	13	RHBDF2 (ENSDCDG00000032294) #7	AANAT (ENSDCDG00000032285) #8	UBE2O (ENSDCDG00000032187) #9	SPHK1 (ENSDCDG00000032173) #10	cygb2 (ENSDCDG00000032167) #11	PRPSAP1 (ENSDCDG00000032148) #12	ENSDCDG00000032147 #13	ddx17 (ENSDCDG00000031724) #14	NTAN1 (ENSDCDG00000031697) #15	ENSDCDG00000031688 #16	bmerb1 (ENSDCDG00000031691) #17	ENSDCDG00000031685 #18	MARF1 (ENSDCDG00000031640) #19	ENSDCDG00000031330 #20	ap1m2 (ENSDCDG00000031255) #21	CDKN2D (ENSDCDG00000031251) #22	ENSDCDG00000031249 #23	keap1b (ENSDCDG00000031248) #24	fdx2 (ENSDCDG00000031244) #25	ENSDCDG00000031243 #26	ENSDCDG00000031239 #27	ENSDCDG00000031238 #28	ENSDCDG00000031235 #29	ENSDCDG00000031233 #30	HMOX1 (ENSDCDG00000031230) #31	ENSDCDG00000031228 #32	ENSDCDG00000031224 #33	ENSDCDG00000031222 #34	ENSDCDG00000031221 #35	pde6ha (ENSDCDG00000031220) #36	pde6ha (ENSDCDG00000031217) #37
Atlantic herring	MODERN SPECIES	18	ddx17 (ENSCHAG00000006115) #14	ENSCHAG00000009990 #15	ENSCHAG00000010135	ENSCHAG00000010153	ENSCHAG00000010171	ENSCHAG00000010180	ENSCHAG00000010208	ENSCHAG00000010226	MPV17L (ENSCHAG00000010298) #16	bmerb1 (ENSCHAG00000010319) #17	MARF1 (ENSCHAG00000010402) #19	SMARCA4 (ENSCHAG00000011670)	ENSCHAG00000022687 #20	ENSCHAG00000025154	ap1m2 (ENSCHAG00000025169) #21	CDKN2D (ENSCHAG00000025438) #22	ENSCHAG00000025442 #23	keap1b (ENSCHAG00000025443) #24	s1pr5b (ENSCHAG00000025449)	fdx2 (ENSCHAG00000025451) ##25	ENSCHAG00000025452	foxd7 (ENSCHAG00000025453)	ENSCHAG00000025457 #27	ENSCHAG00000025461 ##28	ENSCHAG00000025462 #30	ENSCHAG00000025464	HMOX1 (ENSCHAG00000025466) #31	ENSCHAG00000025474 #32	ENSCHAG00000025482 #33	ENSCHAG00000025506	ENSCHAG00000025511 #35
Otophysi	ANCESTRAL SPECIES	8	ENSGT00940000153510.a	ENSGT00940000161425	ENSGT00390000010231	ENSGT00940000156057.s.a	ENSGT00940000156448.a.a	ENSGT00940000160049 #14	ENSGT00390000016730 #15	ENSGT00940000162556.E.a	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT01030000234881.c	ENSGT00390000017673.b.k #31	ENSGT00390000006009.b #32	ENSGT00940000156865.a #33	ENSGT00710000107036.a.b #34	ENSGT00930000151058 #35	ENSGT00390000013260.A.b.b #36
Cyprinoidei	ANCESTRAL SPECIES	103							ENSGT00950000183003.a.a.b.c.a	ENSGT00530000064137.a.b	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089.g #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT01030000234881.c	ENSGT00390000017673.b.k #31	ENSGT00940000156865.a #33	ENSGT00710000107036.a.b #34	ENSGT00930000151058 #35	ENSGT00390000013260.A.b.b #36	ENSGT00940000157534.a.a
Cyprininae	ANCESTRAL SPECIES	355						ENSGT00530000064137.a.b.z	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.a.b #20	ENSGT00940000159089.h #21	ENSGT00940000154819.a.b.c.b.a.a #20	ENSGT00940000159089.g #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143.e #25	ENSGT00470000042444	ENSGT00940000166140 #27	ENSGT00940000165343.c.a.a.b #28	ENSGT00390000012436.h #30	ENSGT01030000234881.c	ENSGT00390000017673.b.k #31	ENSGT00940000156865.a.d #33	ENSGT00940000173517	ENSGT00930000151058 #35	ENSGT00390000013260.A.b.b.h.b #36	ENSGT00940000157534.a.a
Goldfish	MODERN SPECIES	46	RTN4 (ENSCARG00000000505)	mtif2 (ENSCARG00000000468)	CCDC88A (ENSCARG00000000374)	rps27a (ENSCARG00000000255)	ENSCARG00000000231	ENSCARG00000000202	bcl11ab (ENSCARG00000000179)	MBD5 (ENSCARG00000033452)	ENSCARG00000033366 #16	bmerb1 (ENSCARG00000033238) #17	ENSCARG00000033227	ENSCARG00000033222	SMARCA4 (ENSCARG00000033077)	ENSCARG00000032756 #20	ENSCARG00000032712 #21	CDKN2D (ENSCARG00000032699) #22	ENSCARG00000032693 #23	s1pr5b (ENSCARG00000032686)	ENSCARG00000032675	fdx2 (ENSCARG00000032658) #25	ENSCARG00000032634 #28	ENSCARG00000032626 #34	pde6ha (ENSCARG00000032617) #36	rbfox2 (ENSCARG00000032604)	atf4a (ENSCARG00000032592)	ENSCARG00000032576	ENSCARG00000032563	ENSCARG00000032553	MGAT3 (ENSCARG00000032516)	TAB1 (ENSCARG00000031618)	ENSCARG00000031577
Cyprininae_a	ANCESTRAL SPECIES	326							ENSGT00950000183003.a.a.b.c.a	ENSGT00530000064137.a.b.y	ENSGT00730000111088.a #16	ENSGT00440000038745.b.j #17	ENSGT00390000002393 #19	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.a.a #20	ENSGT00940000159089.g #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143.e #25	ENSGT00470000042444	ENSGT00940000166140 #27	ENSGT00940000165343.c.a.b #28	ENSGT00940000165343.d ##28	ENSGT00390000012436.h #30	ENSGT01030000234881.c	ENSGT00390000017673.b.k #31	ENSGT00940000156865.a.d #33	ENSGT00940000173517	ENSGT00930000151058 #35	ENSGT00390000013260.A.b.b.h.b #36
Golden-line barbel	MODERN SPECIES	2027															ap1m2 (ENSSGRG00000007830) #21	CDKN2D (ENSSGRG00000007829) #22	ENSSGRG00000007828 #23	s1pr5b (ENSSGRG00000007826)	fdx2 (ENSSGRG00000007825) #25
Zebrafish	MODERN SPECIES	21							ENSDARG00000112811	MARF1 (ENSDARG00000115222) #19	bmerb1 (ENSDARG00000086706) #17	ENSDARG00000059581	sowahcb (ENSDARG00000059582)	crygm4 (ENSDARG00000008219)	SMARCA4 (ENSDARG00000104339)	ENSDARG00000026759 #20	ap1m2 (ENSDARG00000096454) #21	CDKN2D (ENSDARG00000094176) #22	ENSDARG00000078283 #23	keap1b (ENSDARG00000074634) #24	s1pr5b (ENSDARG00000052192)	fdx2 (ENSDARG00000052190) #25	zglp1 (ENSDARG00000067669)	ENSDARG00000110178 #27	TAB1 (ENSDARG00000036613)	MGAT3 (ENSDARG00000036619)	ENSDARG00000006544	ENSDARG00000091124	atf4a (ENSDARG00000111939)	rbfox2 (ENSDARG00000052182)	pde6ha (ENSDARG00000102558) #36	ENSDARG00000099309	ENSDARG00000103662
Characiphysae	ANCESTRAL SPECIES	18	ENSGT00940000153510.a	ENSGT00940000161425	ENSGT00390000010231	ENSGT00940000156057.s.a	ENSGT00940000156448.a.a	ENSGT00940000160049 #14	ENSGT00390000016730 #15	ENSGT00940000162556.E.a	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT01030000234881.c	ENSGT00390000017673.b.k #31	ENSGT00390000006009.b #32	ENSGT00940000156865.a #33	ENSGT00710000107036.a.b #34	ENSGT00930000151058 #35	ENSGT00390000013260.A.b.b #36
Characiphysae_b	ANCESTRAL SPECIES	46	ENSGT00940000153510.a	ENSGT00940000161425	ENSGT00390000010231	ENSGT00940000156057.s.a	ENSGT00940000156448.a.a	ENSGT00940000160049 #14	ENSGT00390000016730 #15	ENSGT00940000162556.E.a	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT01030000234881.c	ENSGT00390000017673.b.k #31	ENSGT00390000006009.b #32	ENSGT00940000156865.a #33	ENSGT00710000107036.a.b #34	ENSGT00930000151058 #35	ENSGT00390000013260.A.b.b #36
Characoidei	ANCESTRAL SPECIES	23	ENSGT00940000153510.a	ENSGT00940000161425	ENSGT00390000010231	ENSGT00940000156057.s.a	ENSGT00940000156448.a.a	ENSGT00940000160049 #14	ENSGT00390000016730 #15	ENSGT00940000162556.E.a	ENSGT00730000111088.a #16	ENSGT00440000038745.b #17	ENSGT00390000002393 #19	ENSGT01100000263495.A.a.b.b.a.a.b.a	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000156865.a #33	ENSGT00710000107036.a.b #34	ENSGT00930000151058 #35	ENSGT00390000013260.A.b.b #36	ENSGT00940000157534.a.a	ENSGT00530000063801.a.a
Red-bellied piranha	MODERN SPECIES	25	ppp1r12c (ENSPNAG00000029893)	si:dkey-43k4.3 (ENSPNAG00000029900)	ENSPNAG00000029907	gga1 (ENSPNAG00000029929)	ddx17 (ENSPNAG00000029948) #14	ENSPNAG00000029960 #15	ENSPNAG00000029964	ENSPNAG00000006584	MPV17L (ENSPNAG00000029981) #16	bmerb1 (ENSPNAG00000029988) #17	MARF1 (ENSPNAG00000030013) #19	ENSPNAG00000030023	SMARCA4 (ENSPNAG00000006636)	ENSPNAG00000030044 #20	ap1m2 (ENSPNAG00000030049) #21	CDKN2D (ENSPNAG00000030052) #22	ENSPNAG00000030054 #23	keap1b (ENSPNAG00000000163) #24	s1pr5b (ENSPNAG00000000164)	fdx2 (ENSPNAG00000007403) #25	zglp1 (ENSPNAG00000007404)	ENSPNAG00000007405 #27	ENSPNAG00000000165 #28	ENSPNAG00000007406 #30	HMOX1 (ENSPNAG00000007407) #31	ENSPNAG00000007409 #33	ENSPNAG00000007410 #34	ENSPNAG00000000166 #35	pde6ha (ENSPNAG00000000167) #36	rbfox2 (ENSPNAG00000000168)	atf4a (ENSPNAG00000000169)
Mexicana tetra	MODERN SPECIES	4	SYNGR1 (ENSAMXG00000017443)	TAB1 (ENSAMXG00000017426)	MGAT3 (ENSAMXG00000017396)	ENSAMXG00000036369	ENSAMXG00000017360	ENSAMXG00000033037	ENSAMXG00000040955	ENSAMXG00000036694	MPV17L (ENSAMXG00000011191) #16	bmerb1 (ENSAMXG00000011201) #17	MARF1 (ENSAMXG00000011210) #19	ENSAMXG00000033110	SMARCA4 (ENSAMXG00000011238)	ENSAMXG00000011312 #20	ap1m2 (ENSAMXG00000031560) #21	ENSAMXG00000033328 #22	ENSAMXG00000011356 #23	keap1b (ENSAMXG00000011366) #24	s1pr5b (ENSAMXG00000025439)	fdx2 (ENSAMXG00000038026) #25	ENSAMXG00000034709 #26	ENSAMXG00000038618 #27	ENSAMXG00000040688 #28	ENSAMXG00000011410 #30	ENSAMXG00000011421 #31	ENSAMXG00000043172	ENSAMXG00000031471 #33	ENSAMXG00000040535 #34	ENSAMXG00000011444 #35	pde6ha (ENSAMXG00000011446) #36	rbfox2 (ENSAMXG00000011451)
Electric eel	MODERN SPECIES	10	dtd1 (ENSEEEG00000006133)	sec23b (ENSEEEG00000005964)	ccdc85al (ENSEEEG00000005955)	bcl11ab (ENSEEEG00000005952)	ENSEEEG00000005951	ENSEEEG00000005948	ENSEEEG00000005942	mtif2 (ENSEEEG00000005929)	ENSEEEG00000005925	bmerb1 (ENSEEEG00000005923) #17	MARF1 (ENSEEEG00000005915) #19	ENSEEEG00000005913	SMARCA4 (ENSEEEG00000005806)	ENSEEEG00000005428 #20	ap1m2 (ENSEEEG00000004883) #21	CDKN2D (ENSEEEG00000004881) #22	ENSEEEG00000004879 #23	keap1b (ENSEEEG00000004878) #24	s1pr5b (ENSEEEG00000004877)	fdx2 (ENSEEEG00000004875) #25	zglp1 (ENSEEEG00000004874)	ENSEEEG00000004872	ENSEEEG00000004871 #27	ENSEEEG00000004870 #28	ENSEEEG00000004868 #30	ENSEEEG00000004867	HMOX1 (ENSEEEG00000004866) #31	ENSEEEG00000004865 #32	ENSEEEG00000004864 #33	ENSEEEG00000004863	ENSEEEG00000004861 #35
Channel catfish	MODERN SPECIES	3	ENSIPUG00000015593	ENSIPUG00000015598	c12h22orf23 (ENSIPUG00000015607)	micall1 (ENSIPUG00000015621)	gga1 (ENSIPUG00000015656)	ddx17 (ENSIPUG00000015768) #14	ntan1 (ENSIPUG00000015993) #15	zgc:158417 (ENSIPUG00000016110)	mp17l (ENSIPUG00000016127) #16	bmerb1 (ENSIPUG00000016202) #17	kiaa0430 (ENSIPUG00000016273) #19	ENSIPUG00000016328	SMARCA4 (ENSIPUG00000016346)	ENSIPUG00000016428 #20	AP1M2 (ENSIPUG00000016495) #21	cdkn2d (ENSIPUG00000016566) #22	ENSIPUG00000016571 #23	keap1 (ENSIPUG00000016583) #24	S1pr1 (ENSIPUG00000016611)	fdx1l (ENSIPUG00000016629) #25	zglp1 (ENSIPUG00000016640)	ENSIPUG00000016647	ENSIPUG00000016654 #27	ENSIPUG00000016660 #28	ENSIPUG00000016677 #30	ENSIPUG00000016698	ENSIPUG00000016708 #31	hmox (ENSIPUG00000016729) #31	ENSIPUG00000016750 #31	ENSIPUG00000016778 #33	ENSIPUG00000016849 #34
Euteleosteomorpha	ANCESTRAL SPECIES	136									ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Protacanthopterygii	ANCESTRAL SPECIES	59	ENSGT00940000155809.o	ENSGT00940000159529	ENSGT00580000081628	ENSGT01030000234642.a.a	ENSGT00390000015948.b	ENSGT00390000009265	ENSGT00940000156270	ENSGT00940000161451.a.a	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.a.a	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a	ENSGT00390000004368	ENSGT00390000000053.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	14	ENSGT00580000081628	ENSGT01030000234642.a.a	ENSGT00390000015948.b.d	ENSGT00390000009265	ENSGT00940000156270	ENSGT00940000161451.a.a.d	ENSGT00940000161451.a.a.c.b	ENSGT00390000010768	ENSGT00940000157700.c.r	ENSGT00530000063000.a.a.b.i.d	ENSGT00940000157700.c.q	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089.e #21	ENSGT00940000159801.B.c #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143.i.b #25	ENSGT00470000042444	ENSGT00940000157140.b.b.b.d	ENSGT00940000166140.a.a #27	ENSGT00940000165343.d ##28	ENSGT00390000012436.h.c #30	ENSGT00390000017673.b.k.d #31	ENSGT00940000166140.a.b #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h.d #30	ENSGT00390000017673.b.k.c.b #31	ENSGT00390000017673.b.k.c.a #31
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT00940000155257.b.a	ENSGT00940000155809.o.c	ENSGT00940000159529.c.a	ENSGT00580000081628	ENSGT01030000234642.a.a	ENSGT00390000015948.b.d	ENSGT00390000009265	ENSGT00940000156270.e	ENSGT00940000161451.a.a.d	ENSGT00390000010768.h.b	ENSGT00940000157700.c.r	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089.e #21	ENSGT00940000159801.B.c.a #22	ENSGT00940000165948.k #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143.i.b #25	ENSGT00470000042444	ENSGT00940000157140.b.b.b.d	ENSGT00940000166140.a.b #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h.c #30	ENSGT00390000017673.b.k.d #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a.e.a	ENSGT00940000157552.s.a.a
Salmo	ANCESTRAL SPECIES	79	ENSGT00940000155257.b.a	ENSGT00940000155809.o.c.b	ENSGT00940000159529.c.b	ENSGT00940000159529.c.a.e	ENSGT00580000081628.j	ENSGT01030000234642.a.a.d	ENSGT00390000015948.b.c.b	ENSGT00940000156270.e	ENSGT00940000161451.a.a.c.a	ENSGT00390000010768.h.b	ENSGT00940000157700.c.r	ENSGT00530000063000.a.a.b.j.g	ENSGT00940000156887.b.i	ENSGT00940000154819.a.b.c.b.e #20	ENSGT00940000159089.e #21	ENSGT00940000159801.B.c.a #22	ENSGT00940000165948.l #23	ENSGT00940000159543.a #24	ENSGT01050000244887.A.a.a.a.i.j	ENSGT00940000161143.i.b #25	ENSGT00470000042444.a.a	ENSGT00940000157140.b.b.b.d.a	ENSGT00940000166140.a.a #27	ENSGT00940000165343.c.a.f #28	ENSGT00390000012436.h.d #30	ENSGT00940000163721.t.a	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a.a	ENSGT00530000063926.b	ENSGT00940000164506.a.a	ENSGT00940000164506.b.a.e.a.a	ENSGT00940000157552.s.a.a
Atlantic salmon	MODERN SPECIES	11	ADD3 (ENSSSAG00000000431)	MXI1 (ENSSSAG00000028007)	dusp5 (ENSSSAG00000007089)	smc3 (ENSSSAG00000020922)	RBM20 (ENSSSAG00000020216)	pdcd4 (ENSSSAG00000012709)	shoc2 (ENSSSAG00000010861)	adra2a (ENSSSAG00000010836)	ENSSSAG00000007380	ENSSSAG00000095214	ENSSSAG00000010449	ENSSSAG00000120604	ENSSSAG00000001534	ENSSSAG00000000924 #20	ENSSSAG00000000837 #21	cdn2d (ENSSSAG00000000830) #22	ENSSSAG00000119700 #23	ENSSSAG00000101878	keap1b (ENSSSAG00000059599) #24	s1pr5b (ENSSSAG00000103422)	ENSSSAG00000112778	ENSSSAG00000100662	ENSSSAG00000039388 #27	ENSSSAG00000039368 #28	ENSSSAG00000039415 #31	ENSSSAG00000094474	ENSSSAG00000090884	ENSSSAG00000119130	ENSSSAG00000000404	ENSSSAG00000000395	ENSSSAG00000115616
River trout	MODERN SPECIES	31	mxi1 (ENSSTUG00000035932)	dusp5 (ENSSTUG00000035949)	smc3 (ENSSTUG00000035960)	RBM20 (ENSSTUG00000036000)	pdcd4b (ENSSTUG00000036027)	bbip1 (ENSSTUG00000036752)	shoc2 (ENSSTUG00000036759)	adra2a (ENSSTUG00000036789)	rnaseh2a (ENSSTUG00000036814)	MAST1 (ENSSTUG00000036970)	atg4da (ENSSTUG00000037257)	SMARCA4 (ENSSTUG00000037345)	ENSSTUG00000040557 #20	ENSSTUG00000044422	AP1M2 (ENSSTUG00000044456) #21	CDKN2D (ENSSTUG00000044759) #22	ENSSTUG00000044764 #23	keap1b (ENSSTUG00000044774) #24	s1pr5b (ENSSTUG00000044895)	fdx2 (ENSSTUG00000044907) #25	ENSSTUG00000044914	ENSSTUG00000044924	ENSSTUG00000044938 #27	ENSSTUG00000044941 #28	ENSSTUG00000044957 #30	ENSSTUG00000044969 #31	ENSSTUG00000045001	rnf11a (ENSSTUG00000045005)	NFIX (ENSSTUG00000045022)	dand5 (ENSSTUG00000045174)	ENSSTUG00000045190
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000155809.o.c	ENSGT01040000240969.a	ENSGT00940000159529.c.a	ENSGT00580000081628	ENSGT01030000234642.a.a	ENSGT00390000015948.b.d	ENSGT00390000009265	ENSGT00940000156270.e	ENSGT00940000161451.a.a.d	ENSGT00390000010768.h.b	ENSGT00940000157700.c.r	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089.e #21	ENSGT00940000159801.B.c.a #22	ENSGT00940000165948.k.a.a #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143.i.b #25	ENSGT00470000042444.c.a	ENSGT00940000157140.b.b.b.d.c	ENSGT00940000166140.a.b #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h.c #30	ENSGT00390000017673.b.k.d #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a.d	ENSGT00530000063926.b	ENSGT00940000164506.b.a.f.b	ENSGT00940000164506.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	125					ENSGT01030000234642.a.a	ENSGT00390000015948.b.d	ENSGT01030000235307	ENSGT00940000156270.e	ENSGT00940000161451.a.a.d	ENSGT00390000010768.h.b	ENSGT00940000157700.c.r	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000159089.f #21	ENSGT00940000159801.B.c.a #22	ENSGT00940000165948.k.a.a #23	ENSGT00940000165948.k.a.b #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143.i.b #25	ENSGT00470000042444.d	ENSGT00940000157140.b.b.b.d.d	ENSGT00940000166140.a.b #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h.d #30	ENSGT00390000017673.b.k.d.a #31	ENSGT00940000163721	ENSGT00390000012078.a.b.c	ENSGT00950000182916.a.b.a.a.a.b.a.b.n	ENSGT00530000063926.b
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	12	ENSOKIG00005028006	ENSOKIG00005027881	ENSOKIG00005027788	pld6 (ENSOKIG00005027774)	ENSOKIG00005027761	PLPPR2 (ENSOKIG00005027738)	mxi1 (ENSOKIG00005027709)	ENSOKIG00005027703	ADD3 (ENSOKIG00005027429)	ENSOKIG00005027383	ABAT (ENSOKIG00005025284)	ENSOKIG00005025136	ENSOKIG00005025121	CREBBP (ENSOKIG00005025106)	AP1M2 (ENSOKIG00005024414) #21	CDKN2D (ENSOKIG00005025085) #22	ENSOKIG00005024389 #23	keap1b (ENSOKIG00005024351) #24	ENSOKIG00005021476 #20	ENSOKIG00005021293	ENSOKIG00005021279	SHOC2 (ENSOKIG00005021256)	ADRA2A (ENSOKIG00005021247)	ENSOKIG00005021243	ENSOKIG00005021229	pdcd4b (ENSOKIG00005021221)	ENSOKIG00005021207	ENSOKIG00005021195	ENSOKIG00005021147 #31	ENSOKIG00005021132 #30	ENSOKIG00005021118 #31
Coho salmon	MODERN SPECIES		ENSOKIG00005027574	ENSOKIG00005027567	ENSOKIG00005027553	RBM20 (ENSOKIG00005027529)	pdcd4b (ENSOKIG00005026471)	bbip1 (ENSOKIG00005026413)	shoc2 (ENSOKIG00005026396)	adra2a (ENSOKIG00005026391)	rnaseh2a (ENSOKIG00005026346)	ENSOKIG00005026329	MAST1 (ENSOKIG00005025942)	atg4da (ENSOKIG00005025851)	SMARCA4 (ENSOKIG00005024660)	ENSOKIG00005021547 #20	AP1M2 (ENSOKIG00005020441) #21	CDKN2D (ENSOKIG00005021389) #22	ENSOKIG00005020370 #23	keap1b (ENSOKIG00005020303) #24	s1pr5b (ENSOKIG00005020277)	fdx2 (ENSOKIG00005020273) #25	ENSOKIG00005020266	ENSOKIG00005020244	ENSOKIG00005020238 #27	ENSOKIG00005020227 #28	ENSOKIG00005020215 #31	rnf11a (ENSOKIG00005020210)	ENSOKIG00005020207	ENSOKIG00005020202	NFIX (ENSOKIG00005020079)	dand5 (ENSOKIG00005020059)	ENSOKIG00005009859
Rainbow trout	MODERN SPECIES	4	dusp5 (ENSOMYG00000073914)	smc3 (ENSOMYG00000071533)	RBM20 (ENSOMYG00000063331)	pdcd4b (ENSOMYG00000007073)	bbip1 (ENSOMYG00000007091)	shoc2 (ENSOMYG00000009051)	adra2a (ENSOMYG00000009116)	ENSOMYG00000032267	ENSOMYG00000076437	ENSOMYG00000006242	ENSOMYG00000069973	ENSOMYG00000060444	ENSOMYG00000009750	ENSOMYG00000010728 #20	ENSOMYG00000011167 #21	ENSOMYG00000011413 #22	ENSOMYG00000011424 #23	keap1b (ENSOMYG00000011445) #24	s1pr5b (ENSOMYG00000066942)	fdx2 (ENSOMYG00000007009) #25	ENSOMYG00000065341	ENSOMYG00000007049	ENSOMYG00000034636 #27	ENSOMYG00000034627 #28	ENSOMYG00000060084	ENSOMYG00000034574 #31	ENSOMYG00000011475	ENSOMYG00000067255	ENSOMYG00000075789	ENSOMYG00000011600	ENSOMYG00000039118
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000159801.B.c.b #22
Oncorhynchus	ANCESTRAL SPECIES	495																ENSGT00940000159801.B.c.b #22	ENSGT00940000165948.k.a.b #23
Rainbow trout	MODERN SPECIES	8	dusp5 (ENSOMYG00000049403)	smc3 (ENSOMYG00000010295)	RBM20 (ENSOMYG00000009882)	pdcd4b (ENSOMYG00000009912)	bbip1 (ENSOMYG00000009143)	shoc2 (ENSOMYG00000050955)	adra2a (ENSOMYG00000077571)	ENSOMYG00000077793	ENSOMYG00000076744	ENSOMYG00000065508	ENSOMYG00000057174	ENSOMYG00000009349	ENSOMYG00000010588	ENSOMYG00000056046 #20	ENSOMYG00000066058 #21	ENSOMYG00000056829 #22	ENSOMYG00000074612 #23	keap1b (ENSOMYG00000058246) #24	s1pr5b (ENSOMYG00000006845)	fdx2 (ENSOMYG00000048092) #25	ENSOMYG00000006941	ENSOMYG00000007070	ENSOMYG00000070142 #27	ENSOMYG00000071344 #28	ENSOMYG00000076070 #30	ENSOMYG00000071975 #31	ENSOMYG00000060443	rnf11a (ENSOMYG00000043465)	ENSOMYG00000050973	dand5 (ENSOMYG00000070027)	ENSOMYG00000065896
Salmo	ANCESTRAL SPECIES																	ENSGT00940000159801.B.c.b #22
River trout	MODERN SPECIES	5	mxi1 (ENSSTUG00000046628)	dusp5 (ENSSTUG00000046615)	ENSSTUG00000046610	smc3 (ENSSTUG00000046554)	RBM20 (ENSSTUG00000046530)	pdcd4b (ENSSTUG00000046044)	bbip1 (ENSSTUG00000046022)	shoc2 (ENSSTUG00000045994)	adra2a (ENSSTUG00000045983)	rnaseh2a (ENSSTUG00000045957)	MAST1 (ENSSTUG00000045793)	atg4da (ENSSTUG00000045777)	SMARCA4 (ENSSTUG00000043678)	ENSSTUG00000039191 #20	AP1M2 (ENSSTUG00000039048) #21	CDKN2D (ENSSTUG00000039035) #22	ENSSTUG00000039030 #23	keap1b (ENSSTUG00000038417) #24	s1pr5b (ENSSTUG00000038384)	fdx2 (ENSSTUG00000038372) #25	ENSSTUG00000038363	ENSSTUG00000038340	ENSSTUG00000038333 #27	ENSSTUG00000038329 #28	ENSSTUG00000038318 #30	ENSSTUG00000038287 #31	rnf11a (ENSSTUG00000038274)	NFIX (ENSSTUG00000038221)	ENSSTUG00000038188	tspan34 (ENSSTUG00000038169)	RAB3D (ENSSTUG00000038123)
Huchen	MODERN SPECIES	3210														ENSHHUG00000018989 #20	AP1M2 (ENSHHUG00000019047) #21	CDKN2D (ENSHHUG00000019167) #22	ENSHHUG00000019170 #23	keap1b (ENSHHUG00000019174) #24	s1pr5b (ENSHHUG00000019204)
Salmoninae	ANCESTRAL SPECIES	1561															ENSGT00940000159089.f #21	ENSGT00940000159801.B.d #22
Huchen	MODERN SPECIES	1637									ENSHHUG00000032783	ENSHHUG00000032785	ENSHHUG00000032788	ENSHHUG00000032790	SMARCA4 (ENSHHUG00000032794)	ENSHHUG00000033245 #20	AP1M2 (ENSHHUG00000034024) #21	CDKN2D (ENSHHUG00000034356) #22	ENSHHUG00000034366 #23	keap1b (ENSHHUG00000034372) #24	ENSHHUG00000034405	s1pr5b (ENSHHUG00000034409)	fdx2 (ENSHHUG00000034413) #25	ENSHHUG00000034416 #26	ENSHHUG00000034422
Salmoninae_a	ANCESTRAL SPECIES	500															ENSGT00940000159089.f #21	ENSGT00940000159801.B.d #22
Salmo	ANCESTRAL SPECIES	75		ENSGT00940000155809.o.c.a	ENSGT00940000159529.c.a.f	ENSGT00580000081628.i	ENSGT01030000234642.a.a.c	ENSGT00390000015948.b.c.a	ENSGT00940000156270.f	ENSGT00940000161451.a.a.c.b	ENSGT00390000010768.h.a	ENSGT00390000009265	ENSGT00940000157700.c.q	ENSGT00530000063000.a.a.b.j.h	ENSGT00940000156887.b.j	ENSGT00940000154819.a.b.c.b.f #20	ENSGT00940000159089.f #21	ENSGT00940000159801.B.d #22	ENSGT00940000165948.k #23	ENSGT00940000159543.b #24	ENSGT01050000244887.A.a.a.a.i.i	ENSGT00940000161143.i.a #25	ENSGT00470000042444.b	ENSGT00940000157140.b.b.b.d.b	ENSGT00940000166140.b #27	ENSGT00940000166140.a.b #27	ENSGT00940000165343.c.a.e #28	ENSGT00390000012436.h.c #30	ENSGT00390000017673.b.k.d #31	ENSGT00940000163721.t.b	ENSGT00950000182916.a.b.a.a.a.b.a.a.c.a.b	ENSGT00940000164506.b.a.e.a.b	ENSGT00940000157552.s.a.b
Atlantic salmon	MODERN SPECIES	3	MXI1 (ENSSSAG00000007073)	dusp5 (ENSSSAG00000027885)	smc3 (ENSSSAG00000007113)	RBM20 (ENSSSAG00000007161)	pdcd4b (ENSSSAG00000007194)	shoc2 (ENSSSAG00000007350)	ENSSSAG00000116566	adra2a (ENSSSAG00000007378)	ENSSSAG00000007077	ENSSSAG00000007449	ENSSSAG00000007403	ENSSSAG00000007658	ENSSSAG00000007791	ENSSSAG00000039549 #20	ENSSSAG00000059187 #21	ENSSSAG00000059525 #22	ENSSSAG00000059543 #23	keap1b (ENSSSAG00000000789) #24	s1pr5b (ENSSSAG00000109157)	ENSSSAG00000000748	ENSSSAG00000063503	ENSSSAG00000000738 #27	ENSSSAG00000111482	ENSSSAG00000000734 #28	ENSSSAG00000105344 #30	ENSSSAG00000000719 #31	rnf11a (ENSSSAG00000000704)	ENSSSAG00000000674	ENSSSAG00000109061	ENSSSAG00000119542	dand5 (ENSSSAG00000097215)
Oncorhynchus	ANCESTRAL SPECIES	319															ENSGT00940000159089.f #21	ENSGT00940000159801.B.d #22	ENSGT00940000165948.k.b #23
Oncorhynchus_a	ANCESTRAL SPECIES	649																ENSGT00940000159801.B.d #22	ENSGT00940000165948.k.b #23
Chinook salmon	MODERN SPECIES	25	cbx6a (ENSOTSG00005044971)	nptxrb (ENSOTSG00005044972)	ENSOTSG00005044973	ENSOTSG00005044975	ENSOTSG00005044977	GOT1 (ENSOTSG00005044978)	CNNM1 (ENSOTSG00005044980)	hoga1 (ENSOTSG00005044985)	NKX2-3 (ENSOTSG00005044988)	slc25a28 (ENSOTSG00005044989)	ENSOTSG00005044991	ENSOTSG00005044992	ENSOTSG00005044993	ENSOTSG00005045011 #20	ap1m2 (ENSOTSG00005046503) #21	CDKN2D (ENSOTSG00005036322) #22	ENSOTSG00005036339 #23	keap1b (ENSOTSG00005036359) #24	KCNJ4 (ENSOTSG00005036361)	SOX10 (ENSOTSG00005036362)	si:dkey-43k4.3 (ENSOTSG00005036363)	ENSOTSG00005036364	gga1 (ENSOTSG00005036367)	ENSOTSG00005037691 #15	get3 (ENSOTSG00005037717)	BEST2 (ENSOTSG00005037719)	JUNB (ENSOTSG00005037721)	prdx2 (ENSOTSG00005037722)	ENSOTSG00005037725	ptger1a (ENSOTSG00005037726)	ilf3a (ENSOTSG00005037729)
Northern pike	MODERN SPECIES	8	mxi1 (ENSELUG00000000969)	dusp5 (ENSELUG00000022779)	smc3 (ENSELUG00000022873)	RBM20 (ENSELUG00000022906)	pdcd4b (ENSELUG00000022960)	bbip1 (ENSELUG00000030082)	shoc2 (ENSELUG00000023017)	adra2a (ENSELUG00000023041)	rnaseh2a (ENSELUG00000023079)	MAST1 (ENSELUG00000023152)	atg4da (ENSELUG00000023164)	SMARCA4 (ENSELUG00000023232)	ENSELUG00000023242 #20	ENSELUG00000029870	ap1m2 (ENSELUG00000023282) #21	CDKN2D (ENSELUG00000023292) #22	ENSELUG00000023317 #23	keap1b (ENSELUG00000023382) #24	s1pr5b (ENSELUG00000023398)	fdx2 (ENSELUG00000023442) #25	ENSELUG00000023468	ENSELUG00000023498	ENSELUG00000023503 #27	ENSELUG00000023533 #28	ENSELUG00000023550	hmox (ENSELUG00000023580) #31	rnf11a (ENSELUG00000032594)	NFIX (ENSELUG00000023645)	ENSELUG00000023674	dand5 (ENSELUG00000023679)	ENSELUG00000029302
Acanthomorphata	ANCESTRAL SPECIES	40	ENSGT00530000063960	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Cod	MODERN SPECIES	16	ENSGMOG00000037137	serhl (ENSGMOG00000005458)	Myg (ENSGMOG00000022467)	ENSGMOG00000005495	zgc:158803 (ENSGMOG00000005508)	ENSGMOG00000005537	ENSGMOG00000025230	ENSGMOG00000030910	ENSGMOG00000005629	ENSGMOG00000005650	ENSGMOG00000005677	ENSGMOG00000024902	ENSGMOG00000005756	ENSGMOG00000017252 #20	ap1m2 (ENSGMOG00000017224) #21	ENSGMOG00000017215 #22	ENSGMOG00000017211 #23	keap1b (ENSGMOG00000017172) #24	ENSGMOG00000025173	ENSGMOG00000025550	ENSGMOG00000026676	ENSGMOG00000009442	ENSGMOG00000009456	ENSGMOG00000009476	ENSGMOG00000025336	ENSGMOG00000036296	ENSGMOG00000035376	ENSGMOG00000022935	ENSGMOG00000009754	ENSGMOG00000009669	ENSGMOG00000009712
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00530000063960	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Pinecone sodierfish	MODERN SPECIES		mb (ENSMMDG00005024881)	pane1 (ENSMMDG00005024880)	zgc:158803 (ENSMMDG00005024878)	smdt1b (ENSMMDG00005024877)	ENSMMDG00005024876	ENSMMDG00005024875	SOX10 (ENSMMDG00005024874)	rnaseh2a (ENSMMDG00005024873)	ENSMMDG00005024872	ENSMMDG00005024871	ENSMMDG00005024870	atg4da (ENSMMDG00005024869)	SMARCA4 (ENSMMDG00005024868)	ENSMMDG00005024867 #20	ap1m2 (ENSMMDG00005024866) #21	CDKN2D (ENSMMDG00005024865) #22	ENSMMDG00005024864	keap1b (ENSMMDG00005024863) #24	s1pr5b (ENSMMDG00005024862)	fdx2 (ENSMMDG00005024861) #25	zglp1 (ENSMMDG00005024860)	ENSMMDG00005024859	ENSMMDG00005024858 #27	ENSMMDG00005024857 #30	HMOX1 (ENSMMDG00005024856) #31	rnf11a (ENSMMDG00005024855)	NFIX (ENSMMDG00005024854)	dand5 (ENSMMDG00005024853)	ENSMMDG00005024852	RAB3D (ENSMMDG00005024851)	pld6 (ENSMMDG00005024850)
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00530000063960	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Tiger tail seahorse	MODERN SPECIES	518	ENSHCOG00000016359	ENSHCOG00000000458	zgc:158803 (ENSHCOG00000016391)	ENSHCOG00000016398	ENSHCOG00000016404	KCNJ4 (ENSHCOG00000016525)	ENSHCOG00000016569	rnaseh2a (ENSHCOG00000016593)	ENSHCOG00000016696	MAST1 (ENSHCOG00000016730)	atg4da (ENSHCOG00000016797)	ENSHCOG00000016821	ENSHCOG00000016836	ENSHCOG00000016845 #20	ap1m2 (ENSHCOG00000016877) #21	CDKN2D (ENSHCOG00000016885) #22	ENSHCOG00000016889 #23	keap1b (ENSHCOG00000016897) #24	s1pr5b (ENSHCOG00000016900)	fdx2 (ENSHCOG00000016915) #25	ENSHCOG00000016944	ENSHCOG00000016954	ENSHCOG00000016961 #27	ENSHCOG00000016983 #28	HMOX1 (ENSHCOG00000016995) #31	rnf11a (ENSHCOG00000017008)	NFIX (ENSHCOG00000017088)	dand5 (ENSHCOG00000017105)	tspan34 (ENSHCOG00000017111)	RAB3D (ENSHCOG00000017123)	pld6 (ENSHCOG00000017130)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.c.a #20	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Ovalentaria	ANCESTRAL SPECIES		ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000181262	ENSGT00940000165343.d ##28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000181262	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000181262	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Amphiprion	ANCESTRAL SPECIES		ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT01090000261423	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000181262	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00950000182916.a.b.a.a.a.b.b.a	ENSGT00530000063926.b
Orange clownfish	MODERN SPECIES	17	mb (ENSAPEG00000022796)	ENSAPEG00000022807	zgc:158803 (ENSAPEG00000022841)	smdt1b (ENSAPEG00000022857)	ENSAPEG00000022874	ENSAPEG00000022889	SOX10 (ENSAPEG00000022921)	rnaseh2a (ENSAPEG00000022937)	ENSAPEG00000022961	MAST1 (ENSAPEG00000022973)	ENSAPEG00000023018	atg4da (ENSAPEG00000023035)	SMARCA4 (ENSAPEG00000023108)	ENSAPEG00000023188 #20	ap1m2 (ENSAPEG00000023204) #21	CDKN2D (ENSAPEG00000023215) #22	ENSAPEG00000023218 #23	keap1b (ENSAPEG00000023223) #24	s1pr5b (ENSAPEG00000023229)	fdx2 (ENSAPEG00000023232) #25	ENSAPEG00000023241	ENSAPEG00000023251	NEU3 (ENSAPEG00000023257)	ENSAPEG00000023267 #27	ENSAPEG00000023300 #28	ENSAPEG00000023313	HMOX1 (ENSAPEG00000023325) #31	rnf11a (ENSAPEG00000023334)	NFIX (ENSAPEG00000023351)	dand5 (ENSAPEG00000023394)	tspan34 (ENSAPEG00000023403)
Clown anemonefish	MODERN SPECIES	1044	mb (ENSAOCG00000008982)	pane1 (ENSAOCG00000009012)	zgc:158803 (ENSAOCG00000009085)	smdt1b (ENSAOCG00000009097)	ENSAOCG00000009111	ENSAOCG00000009131	SOX10 (ENSAOCG00000009184)	rnaseh2a (ENSAOCG00000009217)	ENSAOCG00000009239	ENSAOCG00000009261	MAST1 (ENSAOCG00000009348)	atg4da (ENSAOCG00000009366)	SMARCA4 (ENSAOCG00000009450)	ENSAOCG00000009468 #20	ap1m2 (ENSAOCG00000009505) #21	CDKN2D (ENSAOCG00000009517) #22	ENSAOCG00000002137 #23	keap1b (ENSAOCG00000009527) #24	s1pr5b (ENSAOCG00000009535)	fdx2 (ENSAOCG00000009574) #25	ENSAOCG00000009617	ENSAOCG00000009625
Spiny chromis	MODERN SPECIES	88	serhl (ENSAPOG00000000089)	mb (ENSAPOG00000003952)	pane1 (ENSAPOG00000003964)	zgc:158803 (ENSAPOG00000003970)	smdt1b (ENSAPOG00000003995)	ENSAPOG00000004017	ENSAPOG00000004042	SOX10 (ENSAPOG00000004067)	rnaseh2a (ENSAPOG00000004101)	MAST1 (ENSAPOG00000004190)	atg4da (ENSAPOG00000004347)	atg4da (ENSAPOG00000004393)	SMARCA4 (ENSAPOG00000004542)	ENSAPOG00000004583 #20	ap1m2 (ENSAPOG00000004630) #21	CDKN2D (ENSAPOG00000004642) #22	ENSAPOG00000000116 #23	keap1b (ENSAPOG00000004671) #24	s1pr5b (ENSAPOG00000004684)	fdx2 (ENSAPOG00000004692) #25	zglp1 (ENSAPOG00000004713)	ENSAPOG00000004728	ENSAPOG00000004745	ENSAPOG00000004766 #27	ENSAPOG00000004786 #28	HMOX1 (ENSAPOG00000004803) #31	rnf11a (ENSAPOG00000004817)	NFIX (ENSAPOG00000004937)	dand5 (ENSAPOG00000004996)	ENSAPOG00000005041
Bicolor damselfish	MODERN SPECIES	239	serhl (ENSSPAG00000013461)	mb (ENSSPAG00000013443)	ENSSPAG00000013408	zgc:158803 (ENSSPAG00000013318)	ENSSPAG00000013302	ENSSPAG00000013289	ENSSPAG00000012865	SOX10 (ENSSPAG00000012804)	rnaseh2a (ENSSPAG00000012769)	ENSSPAG00000012759	MAST1 (ENSSPAG00000012704)	atg4da (ENSSPAG00000012672)	SMARCA4 (ENSSPAG00000012533)	ENSSPAG00000012489 #20	ap1m2 (ENSSPAG00000012447) #21	CDKN2D (ENSSPAG00000012438) #22	ENSSPAG00000012424 #23	keap1b (ENSSPAG00000012410) #24	s1pr5b (ENSSPAG00000012405)	fdx2 (ENSSPAG00000012392) #25	zglp1 (ENSSPAG00000012373)	ENSSPAG00000012365	ENSSPAG00000012355	ENSSPAG00000012346	NEU3 (ENSSPAG00000012338)	ENSSPAG00000012330 #27	ENSSPAG00000012292 #28	HMOX1 (ENSSPAG00000012255) #31	rnf11a (ENSSPAG00000012240)	NFIX (ENSSPAG00000012179)	dand5 (ENSSPAG00000012165)
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.c.b #20	ENSGT00940000154819.a.b.c.b.c.a #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.c.b #20	ENSGT00940000154819.a.b.c.b.c.a.a #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.c.b #20	ENSGT00940000154819.a.b.c.b.c.a.a #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d.f.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.c.a.a #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d.f.a	ENSGT00950000182944.A.b.d.f.b	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Burton s mouthbrooder	MODERN SPECIES	734	ENSHBUG00000005167	zgc:158803 (ENSHBUG00000005175)	smdt1b (ENSHBUG00000005194)	ENSHBUG00000005215	KCNJ4 (ENSHBUG00000005222)	ENSHBUG00000005242	rnaseh2a (ENSHBUG00000005267)	ENSHBUG00000005303	MAST1 (ENSHBUG00000005318)	atg4da (ENSHBUG00000005336)	SMARCA4 (ENSHBUG00000005447)	ENSHBUG00000005468	ENSHBUG00000005484	ENSHBUG00000006790 #20	ap1m2 (ENSHBUG00000006969) #21	CDKN2D (ENSHBUG00000006917) #22	ENSHBUG00000006982 #23	keap1b (ENSHBUG00000006989) #24	s1pr5b (ENSHBUG00000006993)	fdx2 (ENSHBUG00000007004) #25	ENSHBUG00000007015	ENSHBUG00000007027	ENSHBUG00000007502
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.c.a.a #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d.f.a	ENSGT00950000182944.A.b.d.f.b	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
P. nyererei	MODERN SPECIES	643	mb (ENSPNYG00000023965)	ENSPNYG00000023967	zgc:158803 (ENSPNYG00000023971)	smdt1b (ENSPNYG00000023975)	KCNJ4 (ENSPNYG00000023978)	ENSPNYG00000023985	rnaseh2a (ENSPNYG00000023986)	ENSPNYG00000023987	ENSPNYG00000023988	MAST1 (ENSPNYG00000023989)	atg4da (ENSPNYG00000023991)	SMARCA4 (ENSPNYG00000023995)	ENSPNYG00000024000 #20	ENSPNYG00000024002 #20	ap1m2 (ENSPNYG00000024003) #21	CDKN2D (ENSPNYG00000024004) #22	ENSPNYG00000024006 #23	keap1b (ENSPNYG00000024008) #24	s1pr5b (ENSPNYG00000024012)	fdx2 (ENSPNYG00000024013) #25	zglp1 (ENSPNYG00000024014)	ENSPNYG00000024016	ENSPNYG00000024017
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.c.a.b #20	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.c.a.a #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d.f.a	ENSGT00950000182944.A.b.d.e	ENSGT00950000182944.A.b.d.f.b	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00950000182916.a.b.a.a.a.b.b.a
Eastern happy	MODERN SPECIES	18	ENSACLG00000009285	smdt1b (ENSACLG00000009268)	ENSACLG00000009244	ENSACLG00000009236	KCNJ4 (ENSACLG00000009229)	ENSACLG00000009200	rnaseh2a (ENSACLG00000009169)	ENSACLG00000009128	MAST1 (ENSACLG00000009080)	atg4da (ENSACLG00000008714)	SMARCA4 (ENSACLG00000008638)	ENSACLG00000008000 #20	ENSACLG00000007950	ENSACLG00000007886 #20	ap1m2 (ENSACLG00000007855) #21	CDKN2D (ENSACLG00000007877) #22	ENSACLG00000007845 #23	keap1b (ENSACLG00000007822) #24	s1pr5b (ENSACLG00000007818)	fdx2 (ENSACLG00000007805) #25	ENSACLG00000007782	ENSACLG00000007772	ENSACLG00000007765	NEU3 (ENSACLG00000007762)	NEU3 (ENSACLG00000007753)	ENSACLG00000007748 #27	ENSACLG00000007737 #28	HMOX1 (ENSACLG00000007729) #31	rnf11a (ENSACLG00000007714)	NFIX (ENSACLG00000007600)	dand5 (ENSACLG00000007596)
Zebra mbuna	MODERN SPECIES	1109	zgc:158803 (ENSMZEG00005023852)	smdt1b (ENSMZEG00005023853)	ENSMZEG00005023854	KCNJ4 (ENSMZEG00005023855)	ENSMZEG00005023856	rnaseh2a (ENSMZEG00005023857)	ENSMZEG00005023858	ENSMZEG00005023859	atg4da (ENSMZEG00005023860)	SMARCA4 (ENSMZEG00005023861)	ENSMZEG00005023862	ENSMZEG00005023863 #20	ENSMZEG00005023864 #20	ENSMZEG00005023865	ap1m2 (ENSMZEG00005023866) #21	CDKN2D (ENSMZEG00005023867) #22	ENSMZEG00005023868 #23	keap1b (ENSMZEG00005023869) #24	s1pr5b (ENSMZEG00005023870)	fdx2 (ENSMZEG00005023871) #25	ENSMZEG00005023872	ENSMZEG00005023873	ENSMZEG00005023874	NEU3 (ENSMZEG00005023875)	NEU3 (ENSMZEG00005023876)	ENSMZEG00005023877	NFIX (ENSMZEG00005023878)	dand5 (ENSMZEG00005023879)	tspan34 (ENSMZEG00005023880)	RAB3D (ENSMZEG00005023881)	pld6 (ENSMZEG00005023882)
Lyretail cichlid	MODERN SPECIES	301	serhl (ENSNBRG00000018375)	serhl (ENSNBRG00000018405)	mb (ENSNBRG00000018430)	ENSNBRG00000018440	zgc:158803 (ENSNBRG00000018476)	smdt1b (ENSNBRG00000018490)	KCNJ4 (ENSNBRG00000018518)	ENSNBRG00000018705	rnaseh2a (ENSNBRG00000018731)	MAST1 (ENSNBRG00000018757)	atg4da (ENSNBRG00000018815)	SMARCA4 (ENSNBRG00000018865)	ENSNBRG00000018933 #20	ENSNBRG00000018963 #20	ap1m2 (ENSNBRG00000019060) #21	CDKN2D (ENSNBRG00000019096) #22	ENSNBRG00000019117 #23	keap1b (ENSNBRG00000019129) #24	s1pr5b (ENSNBRG00000019138)	fdx2 (ENSNBRG00000019149) #25	zglp1 (ENSNBRG00000019171)	ENSNBRG00000019197	NEU3 (ENSNBRG00000019205)	ENSNBRG00000019216 #27	ENSNBRG00000019223 ##28	HMOX1 (ENSNBRG00000019244) #31	rnf11a (ENSNBRG00000019250)	NFIX (ENSNBRG00000019307)	dand5 (ENSNBRG00000019412)	tspan34 (ENSNBRG00000019428)	RAB3D (ENSNBRG00000019454)
Nile tilapia	MODERN SPECIES	18	serhl (ENSONIG00000018014)	serhl (ENSONIG00000018016)	Mb (ENSONIG00000018018)	ENSONIG00000018021	zgc:158803 (ENSONIG00000018025)	smdt1b (ENSONIG00000036008)	ENSONIG00000018028	KCNJ4 (ENSONIG00000018031)	ENSONIG00000018032	rnaseh2a (ENSONIG00000018033)	MAST1 (ENSONIG00000018034)	atg4da (ENSONIG00000031738)	SMARCA4 (ENSONIG00000018040)	ENSONIG00000018056 #20	ap1m2 (ENSONIG00000018060) #21	CDKN2D (ENSONIG00000032001) #22	ENSONIG00000018063 #23	keap1b (ENSONIG00000018066) #24	s1pr5b (ENSONIG00000021227)	fdx2 (ENSONIG00000018067) #25	ENSONIG00000033442	ENSONIG00000018068	neu3e (ENSONIG00000018070)	NEU3 (ENSONIG00000018069)	ENSONIG00000028184	ENSONIG00000018071 #27	ENSONIG00000018073 #28	HMOX1 (ENSONIG00000018076) #31	rnf11a (ENSONIG00000037073)	NFIX (ENSONIG00000018077)	dand5 (ENSONIG00000018078)
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	595								ENSACIG00000008912	ENSACIG00000008905	bend5 (ENSACIG00000008860)	ENSACIG00000008842	AGBL4 (ENSACIG00000008810)	elavl4 (ENSACIG00000008793)	dmrta2 (ENSACIG00000008749)	faf1 (ENSACIG00000008712)	ENSACIG00000008680 #22	rnf11b (ENSACIG00000008644)	TTC39A (ENSACIG00000008612)	EPS15 (ENSACIG00000008531)	calr (ENSACIG00000008509)	tor3a (ENSACIG00000008486)	osbpl9 (ENSACIG00000008374)	abl2 (ENSACIG00000008184)	soat1 (ENSACIG00000008124)	ENSACIG00000008065	ENSACIG00000008034	CACNA1E (ENSACIG00000007982)	CEP350 (ENSACIG00000007837)	qsox1 (ENSACIG00000007802)	lhx4 (ENSACIG00000007782)	acbd6 (ENSACIG00000007757)
Midas cichlid	MODERN SPECIES	1199	ENSACIG00000002373	serhl (ENSACIG00000002390)	mb (ENSACIG00000002412)	ENSACIG00000002427	zgc:158803 (ENSACIG00000002441)	smdt1b (ENSACIG00000002454)	KCNJ4 (ENSACIG00000002474)	ENSACIG00000002643	rnaseh2a (ENSACIG00000002658)	MAST1 (ENSACIG00000002693)	atg4da (ENSACIG00000003005)	SMARCA4 (ENSACIG00000003035)	ENSACIG00000003107 #20	ENSACIG00000003155 #20	ap1m2 (ENSACIG00000003239) #21	CDKN2D (ENSACIG00000003266) #22	ENSACIG00000003274 #23	keap1b (ENSACIG00000003284) #24	s1pr5b (ENSACIG00000003324)	fdx2 (ENSACIG00000003335) #25	zglp1 (ENSACIG00000003353)	ENSACIG00000003377	NEU3 (ENSACIG00000003385)	ENSACIG00000003395	NEU3 (ENSACIG00000003415)	NEU3 (ENSACIG00000003494)	ENSACIG00000003519 #27	ENSACIG00000003529 #29	HMOX1 (ENSACIG00000003536) #31	rnf11a (ENSACIG00000003661)	NFIX (ENSACIG00000003674)
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Oryzias	ANCESTRAL SPECIES	15	ENSGT01030000234820	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT01030000234820	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00940000165833	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000028999	serhl (ENSORLG00000004149)	mb (ENSORLG00000026103)	pane1 (ENSORLG00000004119)	ENSORLG00000004110	smdt1b (ENSORLG00000004088)	ENSORLG00000004082	ENSORLG00000004067	ENSORLG00000024031	rnaseh2a (ENSORLG00000004042)	ENSORLG00000022445	atg4da (ENSORLG00000004021)	ENSORLG00000003955	ENSORLG00000003886 #20	ap1m2 (ENSORLG00000003846) #21	CDKN2D (ENSORLG00000003842) #22	ENSORLG00000003831 #23	ENSORLG00000027541 #23	keap1b (ENSORLG00000003823) #24	s1pr5b (ENSORLG00000003793)	fdx2 (ENSORLG00000029397) #25	ENSORLG00000024901	ENSORLG00000003779	ENSORLG00000003776 #27	ENSORLG00000003769 #28	ENSORLG00000028289 #30	ENSORLG00000003753 #31	rnf11a (ENSORLG00000022986)	NFIX (ENSORLG00000003734)	dand5 (ENSORLG00000003690)	tspan34 (ENSORLG00000003680)
Chinese medaka	MODERN SPECIES	272	ENSOSIG00000021706	serhl (ENSOSIG00000021711)	mb (ENSOSIG00000021717)	pane1 (ENSOSIG00000021730)	ENSOSIG00000021748	ENSOSIG00000021753	ENSOSIG00000021756	ENSOSIG00000021766	SOX10 (ENSOSIG00000021784)	rnaseh2a (ENSOSIG00000021790)	MAST1 (ENSOSIG00000021971)	atg4da (ENSOSIG00000022514)	SMARCA4 (ENSOSIG00000022566)	ENSOSIG00000022637 #20	AP1M2 (ENSOSIG00000022846) #21	CDKN2D (ENSOSIG00000022850) #22	ENSOSIG00000022851	ENSOSIG00000022853	keap1b (ENSOSIG00000022855) #24	s1pr5b (ENSOSIG00000022856)	fdx2 (ENSOSIG00000022858) #25	ENSOSIG00000022860	ENSOSIG00000022863	ENSOSIG00000022867 #27	ENSOSIG00000022869 #28	ENSOSIG00000022870 ##28	ENSOSIG00000000088	HMOX1 (ENSOSIG00000000100) #31	rnf11a (ENSOSIG00000000109)	NFIX (ENSOSIG00000000182)	dand5 (ENSOSIG00000000234)
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT01030000234820	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a	ENSGT00390000004368
Javanese ricefish	MODERN SPECIES		septin3 (ENSOJAG00000018354)	ENSOJAG00000018446	serhl (ENSOJAG00000018454)	mb (ENSOJAG00000018470)	ENSOJAG00000018485	zgc:158803 (ENSOJAG00000018496)	smdt1b (ENSOJAG00000018524)	ENSOJAG00000018533	ENSOJAG00000018551	SOX10 (ENSOJAG00000018558)	rnaseh2a (ENSOJAG00000018576)	MAST1 (ENSOJAG00000018779)	atg4da (ENSOJAG00000020110)	ENSOJAG00000020541 #20	ap1m2 (ENSOJAG00000021653) #21	CDKN2D (ENSOJAG00000021763) #22	ENSOJAG00000021769 #23	keap1b (ENSOJAG00000021777) #24	s1pr5b (ENSOJAG00000021789)	fdx2 (ENSOJAG00000021790) #25	ENSOJAG00000021795	ENSOJAG00000021797	ENSOJAG00000021805 #27	ENSOJAG00000021807 #28	HMOX1 (ENSOJAG00000021814) #31	rnf11a (ENSOJAG00000021842)	NFIX (ENSOJAG00000021867)	dand5 (ENSOJAG00000021902)	tspan34 (ENSOJAG00000021920)	RAB3D (ENSOJAG00000021948)	pld6 (ENSOJAG00000021963)
Indian medaka	MODERN SPECIES	21	ENSOMEG00000016237	serhl (ENSOMEG00000016261)	mb (ENSOMEG00000016290)	ENSOMEG00000016315	zgc:158803 (ENSOMEG00000016350)	smdt1b (ENSOMEG00000016364)	ENSOMEG00000016389	ENSOMEG00000016403	SOX10 (ENSOMEG00000016415)	rnaseh2a (ENSOMEG00000016454)	MAST1 (ENSOMEG00000000412)	atg4da (ENSOMEG00000016515)	SMARCA4 (ENSOMEG00000016626)	ENSOMEG00000000419 #20	ap1m2 (ENSOMEG00000016714) #21	CDKN2D (ENSOMEG00000016735) #22	ENSOMEG00000016757 #23	fdx2 (ENSOMEG00000000776) #25	ENSOMEG00000016799	ENSOMEG00000016816	keap1b (ENSOMEG00000016855) #24	ENSOMEG00000016869 #27	ENSOMEG00000016899 #28	HMOX1 (ENSOMEG00000016914) #31	rnf11a (ENSOMEG00000016928)	NFIX (ENSOMEG00000017131)	dand5 (ENSOMEG00000017180)	tspan34 (ENSOMEG00000017196)	RAB3D (ENSOMEG00000017217)	pld6 (ENSOMEG00000017243)	elof1 (ENSOMEG00000017257)
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Aplocheiloidei	ANCESTRAL SPECIES	32	ENSGT00940000153469.a.a.l	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Mangrove rivulus	MODERN SPECIES	138	ENSKMAG00000020046	mb (ENSKMAG00000020029)	ENSKMAG00000020017	zgc:158803 (ENSKMAG00000019994)	ENSKMAG00000019985	ENSKMAG00000019930	ENSKMAG00000019899	KCNJ4 (ENSKMAG00000019890)	SOX10 (ENSKMAG00000019870)	rnaseh2a (ENSKMAG00000019829)	MAST1 (ENSKMAG00000019681)	atg4da (ENSKMAG00000019629)	SMARCA4 (ENSKMAG00000019518)	ENSKMAG00000019458 #20	ap1m2 (ENSKMAG00000019421) #21	CDKN2D (ENSKMAG00000019404) #22	ENSKMAG00000019395 #23	keap1b (ENSKMAG00000019360) #24	s1pr5b (ENSKMAG00000019347)	fdx2 (ENSKMAG00000019336) #25	ENSKMAG00000019325	ENSKMAG00000019315	ENSKMAG00000019305	ENSKMAG00000019283 #27	ENSKMAG00000019262 #28	ENSKMAG00000019249 #31	rnf11a (ENSKMAG00000019233)	NFIX (ENSKMAG00000019092)	dand5 (ENSKMAG00000019010)	tspan34 (ENSKMAG00000018993)	ENSKMAG00000018973
Turquoise killifish	MODERN SPECIES	1617	MB (ENSNFUG00015018903)	ENSNFUG00015018909	PANE1 (ENSNFUG00015018910)	zgc:158803 (ENSNFUG00015018917)	C3H22ORF32 (ENSNFUG00015018926)	ENSNFUG00015018928	ENSNFUG00015018933	ENSNFUG00015018937	SOX10 (ENSNFUG00015018941)	RNASEH2A (ENSNFUG00015018947)	MAST1 (ENSNFUG00015019007)	atg4da (ENSNFUG00015020523)	SMARCA4 (ENSNFUG00015020530)	ENSNFUG00015020613 #20	ap1m2 (ENSNFUG00015022583) #21	Cdkn2d (ENSNFUG00015022781) #22	ENSNFUG00015022782 #23	LRRC8E (ENSNFUG00015022783)	DDX5 (ENSNFUG00015022815)	Nfu_g_1_013649 (ENSNFUG00015023104)	ENSNFUG00015023110	TTBK1 (ENSNFUG00015023144)	TPC3 (ENSNFUG00015023162)	TMEM246 (ENSNFUG00015023205)	LGALSLA (ENSNFUG00015023207)	slc29a2 (ENSNFUG00015023212)	PELI1A (ENSNFUG00015023219)	vps54 (ENSNFUG00015023231)	ugp2a (ENSNFUG00015023325)	MDH1 (ENSNFUG00015023534)	otx2a (ENSNFUG00015023572)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Platyfish	MODERN SPECIES	19	serhl (ENSXMAG00000006867)	mb (ENSXMAG00000025476)	ENSXMAG00000006894	zgc:158803 (ENSXMAG00000006903)	ENSXMAG00000022941	ENSXMAG00000006923	ENSXMAG00000006940	ENSXMAG00000021473	rnaseh2a (ENSXMAG00000006953)	ENSXMAG00000027436	MAST1 (ENSXMAG00000006970)	atg4da (ENSXMAG00000007016)	SMARCA4 (ENSXMAG00000007030)	ENSXMAG00000007105 #20	ap1m2 (ENSXMAG00000007151) #21	CDKN2D (ENSXMAG00000022409) #22	ENSXMAG00000007179 #23	keap1b (ENSXMAG00000021448) #24	s1pr5b (ENSXMAG00000019815)	fdx2 (ENSXMAG00000005511) #25	ENSXMAG00000020994	ENSXMAG00000019816	ENSXMAG00000026103	ENSXMAG00000027376 #27	ENSXMAG00000025089 #28	ENSXMAG00000025662 #30	HMOX1 (ENSXMAG00000007220) #31	rnf11a (ENSXMAG00000022184)	NFIX (ENSXMAG00000007238)	dand5 (ENSXMAG00000017343)	tspan34 (ENSXMAG00000024059)
Poecilia	ANCESTRAL SPECIES	6	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000165343.d ##28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Guppy	DUPLICATION
Guppy	DUPLICATION
Guppy	MODERN SPECIES	456	ENSPREG00000020075	ENSPREG00000020055	ARHGAP39 (ENSPREG00000020019)	ENSPREG00000019993	rad54l (ENSPREG00000019955)	ENSPREG00000019898	EPS15L1 (ENSPREG00000019656)	ENSPREG00000019559	ENSPREG00000019547	SZT2 (ENSPREG00000019474)	hyi (ENSPREG00000019414)	ENSPREG00000019400	ENSPREG00000019384	ENSPREG00000019377	ENSPREG00000019359	ENSPREG00000019157 #22	bend5 (ENSPREG00000019102)	AGBL4 (ENSPREG00000019035)	elavl4 (ENSPREG00000018937)	dmrta2 (ENSPREG00000018881)	faf1 (ENSPREG00000018831)	ENSPREG00000018593 #22	rnf11b (ENSPREG00000018536)	TTC39A (ENSPREG00000018452)	EPS15 (ENSPREG00000018381)	calr (ENSPREG00000018357)	tor3a (ENSPREG00000018330)	osbpl9 (ENSPREG00000018181)	abl2 (ENSPREG00000018109)	soat1 (ENSPREG00000018080)	CACNA1E (ENSPREG00000017980)
Guppy	MODERN SPECIES	456	EPS15L1 (ENSPREG00000019656)	ENSPREG00000019559	ENSPREG00000019547	SZT2 (ENSPREG00000019474)	hyi (ENSPREG00000019414)	ENSPREG00000019400	ENSPREG00000019384	ENSPREG00000019377	ENSPREG00000019359	ENSPREG00000019157 #22	bend5 (ENSPREG00000019102)	AGBL4 (ENSPREG00000019035)	elavl4 (ENSPREG00000018937)	dmrta2 (ENSPREG00000018881)	faf1 (ENSPREG00000018831)	ENSPREG00000018593 #22	rnf11b (ENSPREG00000018536)	TTC39A (ENSPREG00000018452)	EPS15 (ENSPREG00000018381)	calr (ENSPREG00000018357)	tor3a (ENSPREG00000018330)	osbpl9 (ENSPREG00000018181)	abl2 (ENSPREG00000018109)	soat1 (ENSPREG00000018080)	CACNA1E (ENSPREG00000017980)	qsox1 (ENSPREG00000017924)	lhx4 (ENSPREG00000017901)	acbd6 (ENSPREG00000017881)	ENSPREG00000017843	sin3b (ENSPREG00000017772)	haus5 (ENSPREG00000017687)
Guppy	MODERN SPECIES	439	tefm (ENSPREG00000015588)	serhl (ENSPREG00000015573)	mb (ENSPREG00000015563)	ENSPREG00000015549	zgc:158803 (ENSPREG00000015528)	smdt1b (ENSPREG00000015520)	ENSPREG00000015510	ENSPREG00000015145	ENSPREG00000015036	rnaseh2a (ENSPREG00000015015)	MAST1 (ENSPREG00000014975)	atg4da (ENSPREG00000014939)	SMARCA4 (ENSPREG00000014823)	ENSPREG00000014073 #20	ap1m2 (ENSPREG00000013898) #21	CDKN2D (ENSPREG00000013882) #22	ENSPREG00000013872 #23	keap1b (ENSPREG00000013858) #24	s1pr5b (ENSPREG00000013844)	fdx2 (ENSPREG00000013790) #25	ENSPREG00000013782	ENSPREG00000013775	ENSPREG00000013771	ENSPREG00000013765 #27	ENSPREG00000013750 #28	HMOX1 (ENSPREG00000013545) #31	rnf11a (ENSPREG00000013482)	NFIX (ENSPREG00000013386)	dand5 (ENSPREG00000013337)	tspan34 (ENSPREG00000013321)	RAB3D (ENSPREG00000013308)
NAME_6	ANCESTRAL SPECIES	47	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000165343.d ##28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	303	ENSPFOG00000004270	tax1bp3 (ENSPFOG00000004292)	slc1a6 (ENSPFOG00000004310)	ENSPFOG00000004463	pole4 (ENSPFOG00000004484)	ENSPFOG00000004525	ccl25b (ENSPFOG00000004562)	gclm (ENSPFOG00000004600)	dnttip2 (ENSPFOG00000004653)	spata6 (ENSPFOG00000023137)	AGBL4 (ENSPFOG00000004717)	bend5 (ENSPFOG00000004753)	elavl4 (ENSPFOG00000004811)	dmrta2 (ENSPFOG00000004939)	faf1 (ENSPFOG00000004981)	ENSPFOG00000005246 #22	rnf11b (ENSPFOG00000005255)	TTC39A (ENSPFOG00000005356)	EPS15 (ENSPFOG00000005835)	calr (ENSPFOG00000005960)	tor3a (ENSPFOG00000006170)	osbpl9 (ENSPFOG00000006260)	abl2 (ENSPFOG00000006669)	soat1 (ENSPFOG00000006972)	ENSPFOG00000007239	CACNA1E (ENSPFOG00000007877)	CEP350 (ENSPFOG00000008359)	qsox1 (ENSPFOG00000008535)	lhx4 (ENSPFOG00000008745)	lhx4 (ENSPFOG00000008766)	acbd6 (ENSPFOG00000008788)
Amazon molly	MODERN SPECIES	295	serhl (ENSPFOG00000012304)	mb (ENSPFOG00000012371)	ENSPFOG00000012395	zgc:158803 (ENSPFOG00000012437)	smdt1b (ENSPFOG00000012495)	ENSPFOG00000012509	ENSPFOG00000021920	ENSPFOG00000012599	ENSPFOG00000012609	rnaseh2a (ENSPFOG00000012627)	MAST1 (ENSPFOG00000012690)	atg4da (ENSPFOG00000012852)	SMARCA4 (ENSPFOG00000012930)	ENSPFOG00000013091 #20	ap1m2 (ENSPFOG00000023907) #21	CDKN2D (ENSPFOG00000013301) #22	ENSPFOG00000013303 #23	keap1b (ENSPFOG00000013318) #24	s1pr5b (ENSPFOG00000020141)	fdx2 (ENSPFOG00000013381) #25	ENSPFOG00000023655	ENSPFOG00000013392	ENSPFOG00000013394 #27	ENSPFOG00000013403 #28	ENSPFOG00000022531 ##28	HMOX1 (ENSPFOG00000013418) #31	rnf11a (ENSPFOG00000013436)	NFIX (ENSPFOG00000013453)	dand5 (ENSPFOG00000013550)	tspan34 (ENSPFOG00000013561)	RAB3D (ENSPFOG00000013657)
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	438														dmrta2 (ENSPLAG00000005407)	faf1 (ENSPLAG00000005394)	ENSPLAG00000005359 #22	rnf11b (ENSPLAG00000005349)	TTC39A (ENSPLAG00000005323)	ENSPLAG00000005144	calr (ENSPLAG00000005102)	tor3a (ENSPLAG00000005070)	osbpl9 (ENSPLAG00000005021)	abl2 (ENSPLAG00000004898)	soat1 (ENSPLAG00000004885)
Sailfin molly	MODERN SPECIES	4										rnaseh2a (ENSPLAG00000018723)	MAST1 (ENSPLAG00000018711)	atg4da (ENSPLAG00000018657)	SMARCA4 (ENSPLAG00000018616)	ENSPLAG00000018526 #20	ap1m2 (ENSPLAG00000018476) #21	CDKN2D (ENSPLAG00000018442) #22	ENSPLAG00000018432 #23	keap1b (ENSPLAG00000018426) #24	s1pr5b (ENSPLAG00000018413)	fdx2 (ENSPLAG00000018407) #25	ENSPLAG00000018403	ENSPLAG00000018396	ENSPLAG00000018392	ENSPLAG00000018384 #27	ENSPLAG00000018376 #28	HMOX1 (ENSPLAG00000018364) #31	rnf11a (ENSPLAG00000018356)	NFIX (ENSPLAG00000018337)	dand5 (ENSPLAG00000018314)	tspan34 (ENSPLAG00000018292)	RAB3D (ENSPLAG00000018052)
NAME_4	ANCESTRAL SPECIES	73	ENSGT00390000010581	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000165343.d ##28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a.d
Sheepshead minnow	MODERN SPECIES	1076															AP1M2 (ENSCVAG00000019645) #21	CDKN2D (ENSCVAG00000019607) #22	ENSCVAG00000019605 #23	keap1b (ENSCVAG00000019600) #24	s1pr5b (ENSCVAG00000019571)	ENSCVAG00000019565	klf4 (ENSCVAG00000019555)	SNCA (ENSCVAG00000019542)	ENSCVAG00000019418	nop14 (ENSCVAG00000019406)	add1 (ENSCVAG00000019337)
Mummichog	MODERN SPECIES	399	serhl (ENSFHEG00000007585)	mb (ENSFHEG00000007598)	ENSFHEG00000007618	zgc:158803 (ENSFHEG00000007623)	smdt1b (ENSFHEG00000007632)	ENSFHEG00000007638	KCNJ4 (ENSFHEG00000007650)	SOX10 (ENSFHEG00000007675)	rnaseh2a (ENSFHEG00000007682)	MAST1 (ENSFHEG00000007742)	atg4da (ENSFHEG00000007752)	SMARCA4 (ENSFHEG00000007902)	ENSFHEG00000007919	ENSFHEG00000007933 #20	ap1m2 (ENSFHEG00000007972) #21	CDKN2D (ENSFHEG00000007983) #22	ENSFHEG00000007992 #23	keap1b (ENSFHEG00000007996) #24	s1pr5b (ENSFHEG00000008004)	ENSFHEG00000008010	fdx2 (ENSFHEG00000008018) #25	ENSFHEG00000008045	ENSFHEG00000008060
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Tetraodontidae	ANCESTRAL SPECIES	44	ENSGT00530000063960.g.b.f	ENSGT00530000063960.g.b.e	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00940000175590 #26	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a	ENSGT00390000004368
Fugu	MODERN SPECIES	8	ENSTRUG00000030710	serhl (ENSTRUG00000000033)	mb (ENSTRUG00000000034)	ENSTRUG00000000037	zgc:158803 (ENSTRUG00000000039)	ENSTRUG00000026631	ENSTRUG00000030066	KCNJ4 (ENSTRUG00000027165)	Sox10a (ENSTRUG00000033126)	rnaseh2a (ENSTRUG00000000049)	MAST1 (ENSTRUG00000001299)	atg4da (ENSTRUG00000001314)	ENSTRUG00000002369 #20	ENSTRUG00000033211	ap1m2 (ENSTRUG00000003149) #21	cdkn2D (ENSTRUG00000003739) #22	ENSTRUG00000003757 #23	keap1b (ENSTRUG00000003855) #24	s1pr5b (ENSTRUG00000004396)	fdx2 (ENSTRUG00000004468) #25	ENSTRUG00000019733 #26	ENSTRUG00000019645	ENSTRUG00000021117 #27	ENSTRUG00000004540 #28	HMOX1 (ENSTRUG00000021266) #31	rnf11a (ENSTRUG00000027847)	NFIX (ENSTRUG00000005030)	charon (ENSTRUG00000005611)	tspan34 (ENSTRUG00000025232)	ENSTRUG00000005632	pld6 (ENSTRUG00000005778)
Tetraodon	MODERN SPECIES	10	atf7ip (ENSTNIG00000007160)	septin3 (ENSTNIG00000004228)	serhl (ENSTNIG00000005517)	mb (ENSTNIG00000005518)	ENSTNIG00000001651	zgc:158803 (ENSTNIG00000005519)	ENSTNIG00000004530	KCNJ4 (ENSTNIG00000004531)	ENSTNIG00000004532	rnaseh2a (ENSTNIG00000004533)	MAST1 (ENSTNIG00000004534)	atg4da (ENSTNIG00000004535)	SMARCA4 (ENSTNIG00000004536)	ENSTNIG00000004537 #20	ap1m2 (ENSTNIG00000004538) #21	CDKN2D (ENSTNIG00000004539) #22	ENSTNIG00000004540 #23	keap1b (ENSTNIG00000004541) #24	s1pr5b (ENSTNIG00000004542)	ENSTNIG00000006132	ENSTNIG00000006133 #27	ENSTNIG00000006134 #28	HMOX1 (ENSTNIG00000006135) #31	rnf11a (ENSTNIG00000006136)	ENSTNIG00000004024	NFIX (ENSTNIG00000003955)	dand5 (ENSTNIG00000006075)	tspan34 (ENSTNIG00000000549)	ENSTNIG00000006074	pld6 (ENSTNIG00000006073)	elof1 (ENSTNIG00000006072)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00950000182944.A.b.c	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b
Ballan wrasse	MODERN SPECIES	287	serhl (ENSLBEG00000019986)	mb (ENSLBEG00000020009)	serhl (ENSLBEG00000020032)	pane1 (ENSLBEG00000020088)	zgc:158803 (ENSLBEG00000020118)	smdt1b (ENSLBEG00000020160)	ENSLBEG00000020143	ENSLBEG00000020228	ENSLBEG00000020466	rnaseh2a (ENSLBEG00000020494)	MAST1 (ENSLBEG00000020537)	atg4da (ENSLBEG00000020609)	SMARCA4 (ENSLBEG00000020655)	ENSLBEG00000020752 #20	ap1m2 (ENSLBEG00000020783) #21	CDKN2D (ENSLBEG00000020818) #22	ENSLBEG00000020827 #23	keap1b (ENSLBEG00000020837) #24	s1pr5b (ENSLBEG00000020859)	fdx2 (ENSLBEG00000020878) #25	ENSLBEG00000020889 #26	ENSLBEG00000020905	NEU3 (ENSLBEG00000020919)	NEU3 (ENSLBEG00000020937)	NEU3 (ENSLBEG00000020949)	NEU3 (ENSLBEG00000020961)	ENSLBEG00000020977 #27	ENSLBEG00000020993 #28	HMOX1 (ENSLBEG00000021015) #31	rnf11a (ENSLBEG00000021032)	NFIX (ENSLBEG00000021105)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00950000182944.A.b.c	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00950000182944.A.b.c.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00950000182944.A.b.c.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b
Large yellow croaker	MODERN SPECIES	481	serhl (ENSLCRG00005009226)	serhl (ENSLCRG00005009224)	mb (ENSLCRG00005009223)	pane1 (ENSLCRG00005009220)	zgc:158803 (ENSLCRG00005009217)	smdt1b (ENSLCRG00005009216)	ENSLCRG00005009215	KCNJ4 (ENSLCRG00005009214)	SOX10 (ENSLCRG00005009213)	rnaseh2a (ENSLCRG00005009186)	MAST1 (ENSLCRG00005008792)	atg4da (ENSLCRG00005008780)	SMARCA4 (ENSLCRG00005007894)	ENSLCRG00005002982 #20	ap1m2 (ENSLCRG00005002656) #21	CDKN2D (ENSLCRG00005002639) #22	ENSLCRG00005002636 #23	keap1 (ENSLCRG00005002628) #24	s1pr5b (ENSLCRG00005002624)	fdx2 (ENSLCRG00005002620) #25	ENSLCRG00005002617	ENSLCRG00005002614	NEU3 (ENSLCRG00005002612)	ENSLCRG00005002559	NEU3 (ENSLCRG00005002553)	ENSLCRG00005002548 #27	ENSLCRG00005002542 #28	ENSLCRG00005002538 #30	HMOX1 (ENSLCRG00005002532) #31	rnf11a (ENSLCRG00005002528)	NFIX (ENSLCRG00005002487)
Gilthead seabream	MODERN SPECIES		serhl (ENSSAUG00010025353)	serhl (ENSSAUG00010025355)	mb (ENSSAUG00010025356)	ENSSAUG00010025357	zgc:158803 (ENSSAUG00010025358)	smdt1b (ENSSAUG00010025359)	ENSSAUG00010025362	KCNJ4 (ENSSAUG00010025363)	SOX10 (ENSSAUG00010025364)	rnaseh2a (ENSSAUG00010025366)	MAST1 (ENSSAUG00010025373)	atg4da (ENSSAUG00010025418)	SMARCA4 (ENSSAUG00010025426)	ENSSAUG00010025464 #20	ap1m2 (ENSSAUG00010025874) #21	CDKN2D (ENSSAUG00010002999) #22	ENSSAUG00010003007 #23	keap1b (ENSSAUG00010003018) #24	s1pr5b (ENSSAUG00010003030)	fdx2 (ENSSAUG00010003033) #25	ENSSAUG00010003043	NEU3 (ENSSAUG00010003053)	ENSSAUG00010003057 #27	ENSSAUG00010003063 #28	HMOX1 (ENSSAUG00010003067) #31	rnf11a (ENSSAUG00010003075)	NFIX (ENSSAUG00010003122)	dand5 (ENSSAUG00010003827)	tspan34 (ENSSAUG00010003831)	ENSSAUG00010003832	pld6 (ENSSAUG00010003834)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.c	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT00650000094757	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Lumpfish	MODERN SPECIES		ENSCLMG00005002697	mb (ENSCLMG00005002698)	pane1 (ENSCLMG00005002699)	zgc:158803 (ENSCLMG00005002700)	smdt1b (ENSCLMG00005002701)	ENSCLMG00005002702	ENSCLMG00005002703	ENSCLMG00005002704	rnaseh2a (ENSCLMG00005002705)	ENSCLMG00005002707	ENSCLMG00005002709	atg4da (ENSCLMG00005002712)	SMARCA4 (ENSCLMG00005002722)	ENSCLMG00005003849 #20	ap1m2 (ENSCLMG00005009306) #21	CDKN2D (ENSCLMG00005009709) #22	ENSCLMG00005009710 #23	keap1b (ENSCLMG00005009711) #24	s1pr5b (ENSCLMG00005009713)	fdx2 (ENSCLMG00005009714) #25	zglp1 (ENSCLMG00005009715)	ENSCLMG00005009716	ENSCLMG00005009717 #27	ENSCLMG00005009718 #28	ENSCLMG00005009719 #30	ENSCLMG00005009720 #31	rnf11a (ENSCLMG00005009721)	NFIX (ENSCLMG00005009722)	dand5 (ENSCLMG00005009726)	tspan34 (ENSCLMG00005009728)	RAB3D (ENSCLMG00005009866)
Stickleback	MODERN SPECIES	4	BFAR (ENSGACG00000019548)	ENSGACG00000019547	ENSGACG00000019545	ears2 (ENSGACG00000019531)	ENSGACG00000019529	ENSGACG00000019526	ENSGACG00000019523	GTF3C1 (ENSGACG00000019516)	AXIN1 (ENSGACG00000019513)	thumpd1 (ENSGACG00000019511)	ENSGACG00000019510	ENSGACG00000019507	parn (ENSGACG00000019501)	ENSGACG00000019500 #20	ap1m2 (ENSGACG00000019492) #21	CDKN2D (ENSGACG00000019491) #22	ENSGACG00000019488 #23	ENSGACG00000019487	ENSGACG00000019486	keap1b (ENSGACG00000019479) #24	s1pr5b (ENSGACG00000019478)	fdx2 (ENSGACG00000019477) #25	ENSGACG00000019476 #27	ENSGACG00000019475 #28	ENSGACG00000019473 ##28	HMOX1 (ENSGACG00000019469) #31	rnf11a (ENSGACG00000019466)	ENSGACG00000019465	NFIX (ENSGACG00000019462)	dand5 (ENSGACG00000019460)	tspan34 (ENSGACG00000019454)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00530000063960.g.b.j.a	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.c	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000012436.h #30	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Pike perch	MODERN SPECIES	69	serhl (ENSSLUG00000015075)	serhl (ENSSLUG00000015079)	mb (ENSSLUG00000015086)	ENSSLUG00000015093	zgc:158803 (ENSSLUG00000015101)	smdt1b (ENSSLUG00000015111)	ENSSLUG00000015124	SOX10 (ENSSLUG00000015215)	rnaseh2a (ENSSLUG00000015229)	ENSSLUG00000015266	MAST1 (ENSSLUG00000015278)	atg4da (ENSSLUG00000015299)	SMARCA4 (ENSSLUG00000016006)	ENSSLUG00000023970 #20	ap1m2 (ENSSLUG00000024580) #21	CDKN2D (ENSSLUG00000024686) #22	ENSSLUG00000024687 #23	keap1b (ENSSLUG00000024692) #24	s1pr5b (ENSSLUG00000024694)	fdx2 (ENSSLUG00000024696) #25	ENSSLUG00000024697	ENSSLUG00000024698	NEU3 (ENSSLUG00000024708)	ENSSLUG00000024731 #28	ENSSLUG00000024733 #27	HMOX1 (ENSSLUG00000024735) #31	rnf11a (ENSSLUG00000024737)	NFIX (ENSSLUG00000024749)	dand5 (ENSSLUG00000024784)	tspan34 (ENSSLUG00000024786)	RAB3D (ENSSLUG00000024787)
Channel bull blenny	MODERN SPECIES		serhl (ENSCGOG00000020536)	mb (ENSCGOG00000020540)	ENSCGOG00000020551	zgc:158803 (ENSCGOG00000020554)	smdt1b (ENSCGOG00000020607)	ENSCGOG00000020606	ENSCGOG00000020609	ENSCGOG00000020610	SOX10 (ENSCGOG00000020612)	rnaseh2a (ENSCGOG00000020614)	MAST1 (ENSCGOG00000020651)	atg4da (ENSCGOG00000020669)	SMARCA4 (ENSCGOG00000020723)	ENSCGOG00000021526 #20	ap1m2 (ENSCGOG00000021610) #21	CDKN2D (ENSCGOG00000021666) #22	ENSCGOG00000021669 #23	keap1b (ENSCGOG00000021671) #24	s1pr5b (ENSCGOG00000021673)	fdx2 (ENSCGOG00000021674) #25	ENSCGOG00000021676	ENSCGOG00000021677	NEU3 (ENSCGOG00000021678)	ENSCGOG00000021679 #27	ENSCGOG00000021681 #28	ENSCGOG00000021685 #30	HMOX1 (ENSCGOG00000021690) #31	rnf11a (ENSCGOG00000021688)	NFIX (ENSCGOG00000021693)	dand5 (ENSCGOG00000021720)	tspan34 (ENSCGOG00000021722)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000181262	ENSGT00940000165343.d ##28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b
Carangaria	ANCESTRAL SPECIES		ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b.f	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b.f	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Seriola	ANCESTRAL SPECIES	29	ENSGT00530000063960.g.b.a	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b.f	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00950000182944.A.b.d.i	ENSGT00950000182944.A.b.d.j	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a
Yellowtail amberjack	MODERN SPECIES	2982	serhl (ENSSLDG00000023844)	serhl (ENSSLDG00000023833)	mb (ENSSLDG00000023825)	pane1 (ENSSLDG00000023816)	zgc:158803 (ENSSLDG00000023807)	smdt1b (ENSSLDG00000023802)	ENSSLDG00000023792	ENSSLDG00000023789	SOX10 (ENSSLDG00000023781)	rnaseh2a (ENSSLDG00000023766)	MAST1 (ENSSLDG00000023742)	atg4da (ENSSLDG00000023718)	SMARCA4 (ENSSLDG00000023663)	ENSSLDG00000023644 #20	ap1m2 (ENSSLDG00000023631) #21	CDKN2D (ENSSLDG00000023627) #22	ENSSLDG00000023625 #23	keap1b (ENSSLDG00000023620) #24	s1pr5b (ENSSLDG00000023617)	fdx2 (ENSSLDG00000023600) #25	ENSSLDG00000023581	ENSSLDG00000023572	NEU3 (ENSSLDG00000023565)	NEU3 (ENSSLDG00000023560)	ENSSLDG00000023552 #27	ENSSLDG00000023542 #28	HMOX1 (ENSSLDG00000023531) #31	rnf11a (ENSSLDG00000023520)	NFIX (ENSSLDG00000023509)
Greater amberjack	MODERN SPECIES	214															ap1m2 (ENSSDUG00000023256) #21	CDKN2D (ENSSDUG00000023261) #22	ENSSDUG00000023263 #23	keap1b (ENSSDUG00000023265) #24	s1pr5b (ENSSDUG00000023268)	fdx2 (ENSSDUG00000023270) #25	ENSSDUG00000023273	ENSSDUG00000023275	NEU3 (ENSSDUG00000023278)	NEU3 (ENSSDUG00000023279)	ENSSDUG00000023281 #27	ENSSDUG00000023284 #28	HMOX1 (ENSSDUG00000023292) #31	rnf11a (ENSSDUG00000023294)	NFIX (ENSSDUG00000023300)	dand5 (ENSSDUG00000023316)	tspan34 (ENSSDUG00000023318)
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	43	hsh2d (ENSLCAG00010027025)	tax1bp3 (ENSLCAG00010027024)	slc1a6 (ENSLCAG00010027021)	ENSLCAG00010027020	pole4 (ENSLCAG00010027018)	ENSLCAG00010027016	ccl25b (ENSLCAG00010027015)	dnttip2 (ENSLCAG00010027011)	spata6 (ENSLCAG00010027010)	AGBL4 (ENSLCAG00010027008)	bend5 (ENSLCAG00010027001)	agbl4 (ENSLCAG00010026997)	elavl4 (ENSLCAG00010026991)	dmrta2 (ENSLCAG00010026986)	faf1 (ENSLCAG00010026978)	ENSLCAG00010026971 #22	rnf11b (ENSLCAG00010026970)	TTC39A (ENSLCAG00010026966)	ENSLCAG00010026955	calr (ENSLCAG00010026951)	tor3a (ENSLCAG00010026949)	osbpl9 (ENSLCAG00010026923)	abl2 (ENSLCAG00010026920)	soat1 (ENSLCAG00010026917)	CACNA1E (ENSLCAG00010025963)	ENSLCAG00010025365	qsox1 (ENSLCAG00010025349)	lhx4 (ENSLCAG00010025342)	acbd6 (ENSLCAG00010025337)	xpr1a (ENSLCAG00010025321)	sin3b (ENSLCAG00010025277)
Barramundi perch	MODERN SPECIES	113	ENSLCAG00010025898	serhl (ENSLCAG00010025881)	mb (ENSLCAG00010025873)	pane1 (ENSLCAG00010025871)	zgc:158803 (ENSLCAG00010025868)	smdt1b (ENSLCAG00010025863)	ENSLCAG00010025859	ENSLCAG00010025857	SOX10 (ENSLCAG00010025851)	rnaseh2a (ENSLCAG00010025845)	MAST1 (ENSLCAG00010025816)	atg4da (ENSLCAG00010025792)	SMARCA4 (ENSLCAG00010025736)	ENSLCAG00010025594 #20	ap1m2 (ENSLCAG00010025411) #21	CDKN2D (ENSLCAG00010025359) #22	ENSLCAG00010025351 #23	keap1b (ENSLCAG00010025348) #24	s1pr5b (ENSLCAG00010025347)	fdx2 (ENSLCAG00010025344) #25	ENSLCAG00010025338	ENSLCAG00010025336	ENSLCAG00010025333	ENSLCAG00010025331	ENSLCAG00010025327	ENSLCAG00010025325	ENSLCAG00010025324	ENSLCAG00010025320 #27	ENSLCAG00010025315 ##28	HMOX1 (ENSLCAG00010025306) #31	rnf11a (ENSLCAG00010025300)
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00530000063960.g.b	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b.f	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a	ENSGT00390000004368
Tongue sole	MODERN SPECIES	19	rgs12b (ENSCSEG00000014005)	chrna6 (ENSCSEG00000013997)	ENSCSEG00000013985	ENSCSEG00000013967	zgc:195282 (ENSCSEG00000013954)	pi4k2b (ENSCSEG00000013924)	htra3a (ENSCSEG00000013897)	GPR78 (ENSCSEG00000013891)	CPZ (ENSCSEG00000013882)	hmx4 (ENSCSEG00000013877)	hmx1 (ENSCSEG00000013871)	adra2c (ENSCSEG00000013863)	lrpap1 (ENSCSEG00000013834)	DOK7 (ENSCSEG00000013814)	ap1m2 (ENSCSEG00000013803) #21	CDKN2D (ENSCSEG00000013798) #22	ENSCSEG00000013791 #23	keap1b (ENSCSEG00000013786) #24	s1pr5b (ENSCSEG00000013780)	fdx2 (ENSCSEG00000013776) #25	ENSCSEG00000013771	ENSCSEG00000013767 #27	ENSCSEG00000013762 #28	rnf11a (ENSCSEG00000013753)	NFIX (ENSCSEG00000013646)	dand5 (ENSCSEG00000013627)	ENSCSEG00000013616	pld6 (ENSCSEG00000013610)	elof1 (ENSCSEG00000013606)	PLPPR2 (ENSCSEG00000013598)	ENSCSEG00000013590
Turbot	DUPLICATION
Turbot	MODERN SPECIES	3	acot11b (ENSSMAG00000007286)	ssbp3b (ENSSMAG00000007250)	dio1 (ENSSMAG00000007191)	dio1 (ENSSMAG00000028072)	ENSSMAG00000007156	ENSSMAG00000007119	ENSSMAG00000007069	ENSSMAG00000007049	dnttip2 (ENSSMAG00000007037)	ENSSMAG00000026136	ENSSMAG00000007019	AGBL4 (ENSSMAG00000006977)	elavl4 (ENSSMAG00000006881)	dmrta2 (ENSSMAG00000006876)	faf1 (ENSSMAG00000006842)	ENSSMAG00000006636 #22	rnf11b (ENSSMAG00000030524)	TTC39A (ENSSMAG00000006580)	ENSSMAG00000006542	calr (ENSSMAG00000006479)	tor3a (ENSSMAG00000006472)	osbpl9 (ENSSMAG00000006210)	abl2 (ENSSMAG00000006075)	soat1 (ENSSMAG00000006059)	ENSSMAG00000005967	ENSSMAG00000005761	ENSSMAG00000005776	CEP350 (ENSSMAG00000005713)	qsox1 (ENSSMAG00000005701)	lhx4 (ENSSMAG00000005678)	acbd6 (ENSSMAG00000005658)
Turbot	MODERN SPECIES	20	septin3 (ENSSMAG00000013826)	ENSSMAG00000021663	serhl (ENSSMAG00000021742)	serhl (ENSSMAG00000013860)	mb (ENSSMAG00000035935)	ENSSMAG00000013896	zgc:158803 (ENSSMAG00000013905)	ENSSMAG00000013932	ENSSMAG00000013938	ENSSMAG00000013959	ENSSMAG00000013970	ENSSMAG00000014004	ENSSMAG00000014050	ENSSMAG00000014211 #20	ap1m2 (ENSSMAG00000014240) #21	ENSSMAG00000030085 #22	ENSSMAG00000014293 #23	s1pr5b (ENSSMAG00000014302)	fdx2 (ENSSMAG00000014312) #25	ENSSMAG00000034429	ENSSMAG00000014340	ENSSMAG00000014349 #27	ENSSMAG00000014359 #28	HO-1 (ENSSMAG00000030685) #31	rnf11a (ENSSMAG00000014402)	ENSSMAG00000014430	dand5 (ENSSMAG00000014617)	ENSSMAG00000014639	ENSSMAG00000014671	ENSSMAG00000014684	ENSSMAG00000027463
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00940000181262	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a
Zig-zag eel	MODERN SPECIES		serhl (ENSMAMG00000003995)	ENSMAMG00000004067	mb (ENSMAMG00000003974)	ENSMAMG00000003936	zgc:158803 (ENSMAMG00000003914)	ENSMAMG00000003891	ENSMAMG00000003879	ENSMAMG00000003152	ENSMAMG00000003107	ENSMAMG00000026089	ENSMAMG00000002992	ENSMAMG00000002970	ENSMAMG00000002841	ENSMAMG00000002789 #20	ap1m2 (ENSMAMG00000002700) #21	ENSMAMG00000025026 #22	ENSMAMG00000002687 #23	keap1b (ENSMAMG00000002679) #24	s1pr5b (ENSMAMG00000002676)	fdx2 (ENSMAMG00000002665) #25	ENSMAMG00000025847	ENSMAMG00000002648	ENSMAMG00000002631 #27	ENSMAMG00000027487 #28	ENSMAMG00000027973	ENSMAMG00000002595 #31	rnf11a (ENSMAMG00000027180)	ENSMAMG00000002467	dand5 (ENSMAMG00000002436)	ENSMAMG00000002427	ENSMAMG00000002400
Anabantoidei	ANCESTRAL SPECIES		ENSGT00530000063960.g.a	ENSGT00940000160809	ENSGT00390000017504	ENSGT00950000183213.a.a.a	ENSGT00390000017489.b	ENSGT00940000157340.k.a	ENSGT01030000234586.A.b.a	ENSGT00940000158046.a.b	ENSGT00390000010768	ENSGT00940000157700.c	ENSGT00530000063000.a.a.b.j	ENSGT00940000156887.b	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.a	ENSGT00940000166140 #27	ENSGT00940000165343.c.a #28	ENSGT00390000017673.b.k #31	ENSGT00940000163721	ENSGT00950000182916.a.b.a.a.a.b.a.a	ENSGT00530000063926.b	ENSGT00940000164506.b.a	ENSGT00940000157552.s.a	ENSGT00390000004368
Climbing perch	MODERN SPECIES		serhl (ENSATEG00000000406)	mb (ENSATEG00000000416)	ENSATEG00000000430	zgc:158803 (ENSATEG00000000437)	ENSATEG00000027300	ENSATEG00000000458	ENSATEG00000000464	ENSATEG00000000870	ENSATEG00000000908	ENSATEG00000000943	ENSATEG00000001031	ENSATEG00000001094	ENSATEG00000002785 #20	ENSATEG00000002793	ap1m2 (ENSATEG00000002811) #21	ENSATEG00000002865 #22	keap1b (ENSATEG00000002872) #24	s1pr5b (ENSATEG00000002909)	fdx2 (ENSATEG00000002919) #25	ENSATEG00000026180	ENSATEG00000025191	ENSATEG00000002944 #27	ENSATEG00000029628 #28	ENSATEG00000002962 #31	ENSATEG00000002973	NFIX (ENSATEG00000003018)	ENSATEG00000003118	ENSATEG00000003157	ENSATEG00000003181	ENSATEG00000026771	ENSATEG00000029063
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	15	tax1bp3 (ENSBSLG00000006164)	slc1a6 (ENSBSLG00000006168)	ENSBSLG00000006186	pole4 (ENSBSLG00000006189)	ENSBSLG00000006193	ccl25b (ENSBSLG00000006207)	gclm (ENSBSLG00000006210)	dnttip2 (ENSBSLG00000006215)	ENSBSLG00000006218	ENSBSLG00000006219	AGBL4 (ENSBSLG00000006221)	bend5 (ENSBSLG00000006226)	elavl4 (ENSBSLG00000006228)	dmrta2 (ENSBSLG00000006289)	faf1 (ENSBSLG00000006832)	ENSBSLG00000007629 #22	rnf11b (ENSBSLG00000007635)	TTC39A (ENSBSLG00000007641)	ENSBSLG00000007708	EPS15 (ENSBSLG00000007929)	calr (ENSBSLG00000008939)	tor3a (ENSBSLG00000009065)	osbpl9 (ENSBSLG00000000740)	abl2 (ENSBSLG00000000959)	soat1 (ENSBSLG00000000984)	soat1 (ENSBSLG00000001015)	CACNA1E (ENSBSLG00000001891)	CEP350 (ENSBSLG00000002121)	qsox1 (ENSBSLG00000002125)	lhx4 (ENSBSLG00000002126)	acbd6 (ENSBSLG00000002171)
Siamese fighting fish	MODERN SPECIES		mb (ENSBSLG00000009908)	mettl14 (ENSBSLG00000009847)	mb (ENSBSLG00000009826)	ENSBSLG00000009814	zgc:158803 (ENSBSLG00000009773)	smdt1b (ENSBSLG00000009756)	ENSBSLG00000009704	KCNJ4 (ENSBSLG00000009531)	ENSBSLG00000009520	rnaseh2a (ENSBSLG00000009501)	ENSBSLG00000007984	atg4da (ENSBSLG00000007401)	SMARCA4 (ENSBSLG00000007283)	ENSBSLG00000005904 #20	ap1m2 (ENSBSLG00000005447) #21	CDKN2D (ENSBSLG00000005390) #22	ENSBSLG00000005374 #23	keap1b (ENSBSLG00000005218) #24	s1pr5b (ENSBSLG00000005182)	fdx2 (ENSBSLG00000005155) #25	ENSBSLG00000005130	ENSBSLG00000005116	ENSBSLG00000005091 #27	ENSBSLG00000005031 #28	HMOX1 (ENSBSLG00000004992) #31	rnf11a (ENSBSLG00000004959)	NFIX (ENSBSLG00000016432)	dand5 (ENSBSLG00000016422)	tspan34 (ENSBSLG00000016418)	ENSBSLG00000016412	pld6 (ENSBSLG00000016408)
Osteoglossiformes	ANCESTRAL SPECIES	41	ENSGT00390000012078.a.b	ENSGT00940000163721	ENSGT00390000012267	ENSGT00390000003817.c	ENSGT00940000161361	ENSGT00940000160152.m	ENSGT00940000161195.a.a.a	ENSGT00940000155828	ENSGT00390000010768	ENSGT00950000183144.B.db.a	ENSGT00940000157700.a	ENSGT00530000063000.a.a.b	ENSGT00940000156887.b	ENSGT00940000154819.a.b.d ##20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.l	ENSGT00940000161143 #25	ENSGT00470000042444	ENSGT00940000157140.b.b.b	ENSGT00940000166140 #27	ENSGT00940000165343 #28	ENSGT00390000012436.g ##30	ENSGT00390000017673.b.k #31	ENSGT00390000006009.b #32	ENSGT00940000156865.a #33	ENSGT00940000162350.b.a	ENSGT00940000162350.b.b	ENSGT00710000107036.a.b #34
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	18	ENSSFOG00015014503	dhps (ENSSFOG00015028198)	zgc:158403 (ENSSFOG00015014474)	GADD45GIP1 (ENSSFOG00015024648)	nfixb (ENSSFOG00015014321)	trir (ENSSFOG00015028164)	get3 (ENSSFOG00015027208)	HOOK2 (ENSSFOG00015014239)	junbb (ENSSFOG00015009655)	ENSSFOG00015014054	rtbdn (ENSSFOG00015014018)	MAST1 (ENSSFOG00015013958)	ENSSFOG00015013947	smarca4a (ENSSFOG00015013823)	ldlra (ENSSFOG00015013750) ##20	CDKN2D (ENSSFOG00015032731) #22	kri1 (ENSSFOG00015013646)	spc24 (ENSSFOG00015013634)	S1PR5 (ENSSFOG00015024243)	ENSSFOG00015013623	foxred2 (ENSSFOG00015013582)	mcm5 (ENSSFOG00015013517)	ENSSFOG00015013478	gcat (ENSSFOG00015013409)	ddx47 (ENSSFOG00015013392)	ENSSFOG00015027877 ##34	ENSSFOG00015013360	pde6ha (ENSSFOG00015032155) #36	ENSSFOG00015013307	ENSSFOG00015013291	ENSSFOG00015013268
Asian bonytongue	MODERN SPECIES	12	rad23aa (ENSSFOG00015009506)	rnf11a (ENSSFOG00015009524)	TRIR (ENSSFOG00015025754)	get3 (ENSSFOG00015009554)	BEST2 (ENSSFOG00015009584)	HOOK2 (ENSSFOG00015009620)	JUNB (ENSSFOG00015031678)	ENSSFOG00015009666	rnaseh2a (ENSSFOG00015009692)	rtbdn (ENSSFOG00015009745)	MAST1 (ENSSFOG00015009789)	atg4da (ENSSFOG00015009908)	SMARCA4 (ENSSFOG00015009921)	ENSSFOG00015010040 ##20	ap1m2 (ENSSFOG00015010047) #21	CDKN2D (ENSSFOG00015010093) #22	ENSSFOG00015010119 #23	keap1b (ENSSFOG00015010140) #24	ENSSFOG00015010170	fdx2 (ENSSFOG00015030952) #25	ENSSFOG00015010183	foxd7 (ENSSFOG00015010194)	ENSSFOG00015031783 #27	ENSSFOG00015031199 #28	hmgxb4a (ENSSFOG00015010243) ##30	ENSSFOG00015010271 #31	ENSSFOG00015010320 #32	TOM1 (ENSSFOG00015010332) #33	ENSSFOG00015010367	ENSSFOG00015010393 #34	ENSSFOG00015030975
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	305								trir (ENSPKIG00000008377)	get3 (ENSPKIG00000008352)	HOOK2 (ENSPKIG00000008237)	junbb (ENSPKIG00000008190)	ENSPKIG00000008169	MAST1 (ENSPKIG00000008007)	smarca4a (ENSPKIG00000007770)	ldlra (ENSPKIG00000007690) ##20	CDKN2D (ENSPKIG00000007669) #22	kri1 (ENSPKIG00000007632)	spc24 (ENSPKIG00000007607)	ENSPKIG00000007590	foxd7 (ENSPKIG00000007581)	ENSPKIG00000007563 #28	tmem205 (ENSPKIG00000007544)	CNN1 (ENSPKIG00000007513)	tlcd4b (ENSPKIG00000007483)	plppr2a (ENSPKIG00000007463)	ENSPKIG00000007453	ENSPKIG00000007434	ENSPKIG00000007418	SLC44A2 (ENSPKIG00000007358)	gcdhb (ENSPKIG00000007270)	syce2 (ENSPKIG00000007229)
P. kingsleyae	MODERN SPECIES	45	rad23aa (ENSPKIG00000009389)	rnf11a (ENSPKIG00000009428)	TRIR (ENSPKIG00000009548)	get3 (ENSPKIG00000009567)	BEST2 (ENSPKIG00000009609)	HOOK2 (ENSPKIG00000009652)	JUNB (ENSPKIG00000009704)	PRDX2 (ENSPKIG00000009726)	rnaseh2a (ENSPKIG00000009756)	rtbdn (ENSPKIG00000009782)	MAST1 (ENSPKIG00000009888)	atg4da (ENSPKIG00000010015)	SMARCA4 (ENSPKIG00000010087)	ENSPKIG00000010225 ##20	ap1m2 (ENSPKIG00000010279) #21	CDKN2D (ENSPKIG00000010335) #22	ENSPKIG00000010349 #23	keap1b (ENSPKIG00000010365) #24	ENSPKIG00000010381	fdx2 (ENSPKIG00000010398) #25	zglp1 (ENSPKIG00000010420)	ENSPKIG00000010442	ENSPKIG00000010456 #27	ENSPKIG00000010465 #28	hmgxb4a (ENSPKIG00000010496) ##30	HMOX1 (ENSPKIG00000010541) #31	ENSPKIG00000010580 #32	TOM1 (ENSPKIG00000010602) #33	ENSPKIG00000010635	ENSPKIG00000010650	ENSPKIG00000010668 #34