Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00530000063960 #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.c.a ##20	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000181262	ENSGT00940000165343.d ##32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36
Carangaria	ANCESTRAL SPECIES		ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b.f #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b.f #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Seriola	ANCESTRAL SPECIES	29	ENSGT00530000063960.g.b.a #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b.f #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d.i #29	ENSGT00950000182944.A.b.d.j #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Yellowtail amberjack	MODERN SPECIES	2982	serhl (ENSSLDG00000023844) #7	serhl (ENSSLDG00000023833) #8	mb (ENSSLDG00000023825) #9	pane1 (ENSSLDG00000023816) #10	zgc:158803 (ENSSLDG00000023807) #11	smdt1b (ENSSLDG00000023802) #12	ENSSLDG00000023792 #13	ENSSLDG00000023789 #14	SOX10 (ENSSLDG00000023781) #15	rnaseh2a (ENSSLDG00000023766) #16	MAST1 (ENSSLDG00000023742) #17	atg4da (ENSSLDG00000023718) #18	SMARCA4 (ENSSLDG00000023663) #19	ENSSLDG00000023644 #20	ap1m2 (ENSSLDG00000023631) #21	CDKN2D (ENSSLDG00000023627) #22	ENSSLDG00000023625 #23	keap1b (ENSSLDG00000023620) #24	s1pr5b (ENSSLDG00000023617) #25	fdx2 (ENSSLDG00000023600) #26	ENSSLDG00000023581 #27	ENSSLDG00000023572 #28	NEU3 (ENSSLDG00000023565) #29	NEU3 (ENSSLDG00000023560) #30	ENSSLDG00000023552 #31	ENSSLDG00000023542 #32	HMOX1 (ENSSLDG00000023531) #33	rnf11a (ENSSLDG00000023520) #34	NFIX (ENSSLDG00000023509) #35
Greater amberjack	MODERN SPECIES	214															ap1m2 (ENSSDUG00000023256) #21	CDKN2D (ENSSDUG00000023261) #22	ENSSDUG00000023263 #23	keap1b (ENSSDUG00000023265) #24	s1pr5b (ENSSDUG00000023268) #25	fdx2 (ENSSDUG00000023270) #26	ENSSDUG00000023273 #27	ENSSDUG00000023275 #28	NEU3 (ENSSDUG00000023278) #29	NEU3 (ENSSDUG00000023279) #30	ENSSDUG00000023281 #31	ENSSDUG00000023284 #32	HMOX1 (ENSSDUG00000023292) #33	rnf11a (ENSSDUG00000023294) #34	NFIX (ENSSDUG00000023300) #35	dand5 (ENSSDUG00000023316) #36	tspan34 (ENSSDUG00000023318) #37
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	43	hsh2d (ENSLCAG00010027025)	tax1bp3 (ENSLCAG00010027024)	slc1a6 (ENSLCAG00010027021)	ENSLCAG00010027020	pole4 (ENSLCAG00010027018)	ENSLCAG00010027016	ccl25b (ENSLCAG00010027015)	dnttip2 (ENSLCAG00010027011)	spata6 (ENSLCAG00010027010)	AGBL4 (ENSLCAG00010027008)	bend5 (ENSLCAG00010027001)	agbl4 (ENSLCAG00010026997)	elavl4 (ENSLCAG00010026991)	dmrta2 (ENSLCAG00010026986)	faf1 (ENSLCAG00010026978)	ENSLCAG00010026971 #22	rnf11b (ENSLCAG00010026970)	TTC39A (ENSLCAG00010026966)	ENSLCAG00010026955	calr (ENSLCAG00010026951)	tor3a (ENSLCAG00010026949)	osbpl9 (ENSLCAG00010026923)	abl2 (ENSLCAG00010026920)	soat1 (ENSLCAG00010026917)	CACNA1E (ENSLCAG00010025963)	ENSLCAG00010025365	qsox1 (ENSLCAG00010025349)	lhx4 (ENSLCAG00010025342)	acbd6 (ENSLCAG00010025337)	xpr1a (ENSLCAG00010025321)	sin3b (ENSLCAG00010025277)
Barramundi perch	MODERN SPECIES	113	ENSLCAG00010025898	serhl (ENSLCAG00010025881) #7	mb (ENSLCAG00010025873) #9	pane1 (ENSLCAG00010025871) #10	zgc:158803 (ENSLCAG00010025868) #11	smdt1b (ENSLCAG00010025863) #12	ENSLCAG00010025859 #13	ENSLCAG00010025857 #14	SOX10 (ENSLCAG00010025851) #15	rnaseh2a (ENSLCAG00010025845) #16	MAST1 (ENSLCAG00010025816) #17	atg4da (ENSLCAG00010025792) #18	SMARCA4 (ENSLCAG00010025736) #19	ENSLCAG00010025594 #20	ap1m2 (ENSLCAG00010025411) #21	CDKN2D (ENSLCAG00010025359) #22	ENSLCAG00010025351 #23	keap1b (ENSLCAG00010025348) #24	s1pr5b (ENSLCAG00010025347) #25	fdx2 (ENSLCAG00010025344) #26	ENSLCAG00010025338 #27	ENSLCAG00010025336 #28	ENSLCAG00010025333	ENSLCAG00010025331 #30	ENSLCAG00010025327 #30	ENSLCAG00010025325 #30	ENSLCAG00010025324 #30	ENSLCAG00010025320 #31	ENSLCAG00010025315 ##32	HMOX1 (ENSLCAG00010025306) #33	rnf11a (ENSLCAG00010025300) #34
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b.f #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a	ENSGT00390000004368
Tongue sole	MODERN SPECIES	19	rgs12b (ENSCSEG00000014005)	chrna6 (ENSCSEG00000013997)	ENSCSEG00000013985	ENSCSEG00000013967	zgc:195282 (ENSCSEG00000013954)	pi4k2b (ENSCSEG00000013924)	htra3a (ENSCSEG00000013897)	GPR78 (ENSCSEG00000013891)	CPZ (ENSCSEG00000013882)	hmx4 (ENSCSEG00000013877)	hmx1 (ENSCSEG00000013871)	adra2c (ENSCSEG00000013863)	lrpap1 (ENSCSEG00000013834)	DOK7 (ENSCSEG00000013814)	ap1m2 (ENSCSEG00000013803) #21	CDKN2D (ENSCSEG00000013798) #22	ENSCSEG00000013791 #23	keap1b (ENSCSEG00000013786) #24	s1pr5b (ENSCSEG00000013780) #25	fdx2 (ENSCSEG00000013776) #26	ENSCSEG00000013771 #27	ENSCSEG00000013767 #31	ENSCSEG00000013762 #32	rnf11a (ENSCSEG00000013753) #34	NFIX (ENSCSEG00000013646) #35	dand5 (ENSCSEG00000013627) #36	ENSCSEG00000013616 #37	pld6 (ENSCSEG00000013610)	elof1 (ENSCSEG00000013606)	PLPPR2 (ENSCSEG00000013598)	ENSCSEG00000013590
Turbot	DUPLICATION
Turbot	MODERN SPECIES	3	acot11b (ENSSMAG00000007286)	ssbp3b (ENSSMAG00000007250)	dio1 (ENSSMAG00000007191)	dio1 (ENSSMAG00000028072)	ENSSMAG00000007156	ENSSMAG00000007119	ENSSMAG00000007069	ENSSMAG00000007049	dnttip2 (ENSSMAG00000007037)	ENSSMAG00000026136	ENSSMAG00000007019	AGBL4 (ENSSMAG00000006977)	elavl4 (ENSSMAG00000006881)	dmrta2 (ENSSMAG00000006876)	faf1 (ENSSMAG00000006842)	ENSSMAG00000006636 #22	rnf11b (ENSSMAG00000030524)	TTC39A (ENSSMAG00000006580)	ENSSMAG00000006542	calr (ENSSMAG00000006479)	tor3a (ENSSMAG00000006472)	osbpl9 (ENSSMAG00000006210)	abl2 (ENSSMAG00000006075)	soat1 (ENSSMAG00000006059)	ENSSMAG00000005967	ENSSMAG00000005761	ENSSMAG00000005776	CEP350 (ENSSMAG00000005713)	qsox1 (ENSSMAG00000005701)	lhx4 (ENSSMAG00000005678)	acbd6 (ENSSMAG00000005658)
Turbot	MODERN SPECIES	20	septin3 (ENSSMAG00000013826)	ENSSMAG00000021663	serhl (ENSSMAG00000021742) #7	serhl (ENSSMAG00000013860) #8	mb (ENSSMAG00000035935) #9	ENSSMAG00000013896 #10	zgc:158803 (ENSSMAG00000013905) #11	ENSSMAG00000013932 #12	ENSSMAG00000013938 #13	ENSSMAG00000013959 #14	ENSSMAG00000013970 #15	ENSSMAG00000014004 #17	ENSSMAG00000014050 #18	ENSSMAG00000014211 #20	ap1m2 (ENSSMAG00000014240) #21	ENSSMAG00000030085 #22	ENSSMAG00000014293 #23	s1pr5b (ENSSMAG00000014302) #25	fdx2 (ENSSMAG00000014312) #26	ENSSMAG00000034429 #27	ENSSMAG00000014340 #28	ENSSMAG00000014349 #31	ENSSMAG00000014359 #32	HO-1 (ENSSMAG00000030685) #33	rnf11a (ENSSMAG00000014402) #34	ENSSMAG00000014430 #35	dand5 (ENSSMAG00000014617) #36	ENSSMAG00000014639 #37	ENSSMAG00000014671	ENSSMAG00000014684	ENSSMAG00000027463
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000181262	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Zig-zag eel	MODERN SPECIES		serhl (ENSMAMG00000003995) #8	ENSMAMG00000004067	mb (ENSMAMG00000003974) #9	ENSMAMG00000003936 #10	zgc:158803 (ENSMAMG00000003914) #11	ENSMAMG00000003891 #12	ENSMAMG00000003879 #13	ENSMAMG00000003152 #14	ENSMAMG00000003107 #15	ENSMAMG00000026089 #16	ENSMAMG00000002992 #17	ENSMAMG00000002970 #18	ENSMAMG00000002841 #19	ENSMAMG00000002789 #20	ap1m2 (ENSMAMG00000002700) #21	ENSMAMG00000025026 #22	ENSMAMG00000002687 #23	keap1b (ENSMAMG00000002679) #24	s1pr5b (ENSMAMG00000002676) #25	fdx2 (ENSMAMG00000002665) #26	ENSMAMG00000025847 #27	ENSMAMG00000002648 #28	ENSMAMG00000002631 #31	ENSMAMG00000027487 #32	ENSMAMG00000027973	ENSMAMG00000002595 #33	rnf11a (ENSMAMG00000027180) #34	ENSMAMG00000002467 #35	dand5 (ENSMAMG00000002436) #36	ENSMAMG00000002427 #37	ENSMAMG00000002400
Anabantoidei	ANCESTRAL SPECIES		ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000177737	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a	ENSGT00390000004368
Climbing perch	MODERN SPECIES		serhl (ENSATEG00000000406) #8	mb (ENSATEG00000000416) #9	ENSATEG00000000430 #10	zgc:158803 (ENSATEG00000000437) #11	ENSATEG00000027300 #12	ENSATEG00000000458 #13	ENSATEG00000000464 #14	ENSATEG00000000870 #15	ENSATEG00000000908 #16	ENSATEG00000000943 #17	ENSATEG00000001031 #18	ENSATEG00000001094 #19	ENSATEG00000002785 #20	ENSATEG00000002793	ap1m2 (ENSATEG00000002811) #21	ENSATEG00000002865 #22	keap1b (ENSATEG00000002872) #24	s1pr5b (ENSATEG00000002909) #25	fdx2 (ENSATEG00000002919) #26	ENSATEG00000026180 #27	ENSATEG00000025191 #28	ENSATEG00000002944 #31	ENSATEG00000029628 #32	ENSATEG00000002962 #33	ENSATEG00000002973 #34	NFIX (ENSATEG00000003018) #35	ENSATEG00000003118 #37	ENSATEG00000003157	ENSATEG00000003181	ENSATEG00000026771	ENSATEG00000029063
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	15	tax1bp3 (ENSBSLG00000006164)	slc1a6 (ENSBSLG00000006168)	ENSBSLG00000006186	pole4 (ENSBSLG00000006189)	ENSBSLG00000006193	ccl25b (ENSBSLG00000006207)	gclm (ENSBSLG00000006210)	dnttip2 (ENSBSLG00000006215)	ENSBSLG00000006218	ENSBSLG00000006219	AGBL4 (ENSBSLG00000006221)	bend5 (ENSBSLG00000006226)	elavl4 (ENSBSLG00000006228)	dmrta2 (ENSBSLG00000006289)	faf1 (ENSBSLG00000006832)	ENSBSLG00000007629 #22	rnf11b (ENSBSLG00000007635)	TTC39A (ENSBSLG00000007641)	ENSBSLG00000007708	EPS15 (ENSBSLG00000007929)	calr (ENSBSLG00000008939)	tor3a (ENSBSLG00000009065)	osbpl9 (ENSBSLG00000000740)	abl2 (ENSBSLG00000000959)	soat1 (ENSBSLG00000000984)	soat1 (ENSBSLG00000001015)	CACNA1E (ENSBSLG00000001891)	CEP350 (ENSBSLG00000002121)	qsox1 (ENSBSLG00000002125)	lhx4 (ENSBSLG00000002126)	acbd6 (ENSBSLG00000002171)
Siamese fighting fish	MODERN SPECIES		mb (ENSBSLG00000009908) #9	mettl14 (ENSBSLG00000009847)	mb (ENSBSLG00000009826) #9	ENSBSLG00000009814 #10	zgc:158803 (ENSBSLG00000009773) #11	smdt1b (ENSBSLG00000009756) #12	ENSBSLG00000009704 #13	KCNJ4 (ENSBSLG00000009531) #14	ENSBSLG00000009520 #15	rnaseh2a (ENSBSLG00000009501) #16	ENSBSLG00000007984 #17	atg4da (ENSBSLG00000007401) #18	SMARCA4 (ENSBSLG00000007283) #19	ENSBSLG00000005904 #20	ap1m2 (ENSBSLG00000005447) #21	CDKN2D (ENSBSLG00000005390) #22	ENSBSLG00000005374 #23	keap1b (ENSBSLG00000005218) #24	s1pr5b (ENSBSLG00000005182) #25	fdx2 (ENSBSLG00000005155) #26	ENSBSLG00000005130 #27	ENSBSLG00000005116 #28	ENSBSLG00000005091 #31	ENSBSLG00000005031 #32	HMOX1 (ENSBSLG00000004992) #33	rnf11a (ENSBSLG00000004959) #34	NFIX (ENSBSLG00000016432) #35	dand5 (ENSBSLG00000016422) #36	tspan34 (ENSBSLG00000016418) #37	ENSBSLG00000016412	pld6 (ENSBSLG00000016408)
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Tetraodontidae	ANCESTRAL SPECIES	44	ENSGT00530000063960.g.b.f #7	ENSGT00530000063960.g.b.e #7	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00940000175590	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a	ENSGT00390000004368
Fugu	MODERN SPECIES	8	ENSTRUG00000030710 #7	serhl (ENSTRUG00000000033) ##8	mb (ENSTRUG00000000034) #9	ENSTRUG00000000037 #10	zgc:158803 (ENSTRUG00000000039) #11	ENSTRUG00000026631 #12	ENSTRUG00000030066 #13	KCNJ4 (ENSTRUG00000027165) #14	Sox10a (ENSTRUG00000033126) #15	rnaseh2a (ENSTRUG00000000049) #16	MAST1 (ENSTRUG00000001299) #17	atg4da (ENSTRUG00000001314) #18	ENSTRUG00000002369 #20	ENSTRUG00000033211	ap1m2 (ENSTRUG00000003149) #21	cdkn2D (ENSTRUG00000003739) #22	ENSTRUG00000003757 #23	keap1b (ENSTRUG00000003855) #24	s1pr5b (ENSTRUG00000004396) #25	fdx2 (ENSTRUG00000004468) #26	ENSTRUG00000019733	ENSTRUG00000019645 #28	ENSTRUG00000021117 #31	ENSTRUG00000004540 #32	HMOX1 (ENSTRUG00000021266) #33	rnf11a (ENSTRUG00000027847) #34	NFIX (ENSTRUG00000005030) #35	charon (ENSTRUG00000005611) #36	tspan34 (ENSTRUG00000025232) #37	ENSTRUG00000005632	pld6 (ENSTRUG00000005778)
Tetraodon	MODERN SPECIES	10	atf7ip (ENSTNIG00000007160)	septin3 (ENSTNIG00000004228)	serhl (ENSTNIG00000005517) #7	mb (ENSTNIG00000005518) #9	ENSTNIG00000001651 #10	zgc:158803 (ENSTNIG00000005519) #11	ENSTNIG00000004530 #13	KCNJ4 (ENSTNIG00000004531) #14	ENSTNIG00000004532 #15	rnaseh2a (ENSTNIG00000004533) #16	MAST1 (ENSTNIG00000004534) #17	atg4da (ENSTNIG00000004535) #18	SMARCA4 (ENSTNIG00000004536) #19	ENSTNIG00000004537 #20	ap1m2 (ENSTNIG00000004538) #21	CDKN2D (ENSTNIG00000004539) #22	ENSTNIG00000004540 #23	keap1b (ENSTNIG00000004541) #24	s1pr5b (ENSTNIG00000004542) #25	ENSTNIG00000006132	ENSTNIG00000006133 #31	ENSTNIG00000006134 #32	HMOX1 (ENSTNIG00000006135) #33	rnf11a (ENSTNIG00000006136) #34	ENSTNIG00000004024 #35	NFIX (ENSTNIG00000003955) #35	dand5 (ENSTNIG00000006075) #36	tspan34 (ENSTNIG00000000549) #37	ENSTNIG00000006074	pld6 (ENSTNIG00000006073)	elof1 (ENSTNIG00000006072)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00950000182944.A.b.c ##30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36
Ballan wrasse	MODERN SPECIES	287	serhl (ENSLBEG00000019986) #7	mb (ENSLBEG00000020009) #9	serhl (ENSLBEG00000020032) #8	pane1 (ENSLBEG00000020088) #10	zgc:158803 (ENSLBEG00000020118) #11	smdt1b (ENSLBEG00000020160) #12	ENSLBEG00000020143 #13	ENSLBEG00000020228 #14	ENSLBEG00000020466 #15	rnaseh2a (ENSLBEG00000020494) #16	MAST1 (ENSLBEG00000020537) #17	atg4da (ENSLBEG00000020609) #18	SMARCA4 (ENSLBEG00000020655) #19	ENSLBEG00000020752 #20	ap1m2 (ENSLBEG00000020783) #21	CDKN2D (ENSLBEG00000020818) #22	ENSLBEG00000020827 #23	keap1b (ENSLBEG00000020837) #24	s1pr5b (ENSLBEG00000020859) #25	fdx2 (ENSLBEG00000020878) #26	ENSLBEG00000020889	ENSLBEG00000020905 #28	NEU3 (ENSLBEG00000020919) ##30	NEU3 (ENSLBEG00000020937) ##30	NEU3 (ENSLBEG00000020949) ##30	NEU3 (ENSLBEG00000020961) ##30	ENSLBEG00000020977 #31	ENSLBEG00000020993 #32	HMOX1 (ENSLBEG00000021015) #33	rnf11a (ENSLBEG00000021032) #34	NFIX (ENSLBEG00000021105) ##35
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00950000182944.A.b.c ##30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00950000182944.A.b.c.d ##30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00950000182944.A.b.c.d ##30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36
Large yellow croaker	MODERN SPECIES	481	serhl (ENSLCRG00005009226) #7	serhl (ENSLCRG00005009224) #8	mb (ENSLCRG00005009223) #9	pane1 (ENSLCRG00005009220) #10	zgc:158803 (ENSLCRG00005009217) #11	smdt1b (ENSLCRG00005009216) #12	ENSLCRG00005009215 #13	KCNJ4 (ENSLCRG00005009214) #14	SOX10 (ENSLCRG00005009213) #15	rnaseh2a (ENSLCRG00005009186) #16	MAST1 (ENSLCRG00005008792) #17	atg4da (ENSLCRG00005008780) #18	SMARCA4 (ENSLCRG00005007894) #19	ENSLCRG00005002982 #20	ap1m2 (ENSLCRG00005002656) #21	CDKN2D (ENSLCRG00005002639) #22	ENSLCRG00005002636 #23	keap1 (ENSLCRG00005002628) #24	s1pr5b (ENSLCRG00005002624) #25	fdx2 (ENSLCRG00005002620) #26	ENSLCRG00005002617 #27	ENSLCRG00005002614 #28	NEU3 (ENSLCRG00005002612) ##30	ENSLCRG00005002559 ##30	NEU3 (ENSLCRG00005002553) ##30	ENSLCRG00005002548 #31	ENSLCRG00005002542 #32	ENSLCRG00005002538	HMOX1 (ENSLCRG00005002532) #33	rnf11a (ENSLCRG00005002528) #34	NFIX (ENSLCRG00005002487) #35
Gilthead seabream	MODERN SPECIES		serhl (ENSSAUG00010025353) #7	serhl (ENSSAUG00010025355) #8	mb (ENSSAUG00010025356) #9	ENSSAUG00010025357 #10	zgc:158803 (ENSSAUG00010025358) #11	smdt1b (ENSSAUG00010025359) #12	ENSSAUG00010025362 #13	KCNJ4 (ENSSAUG00010025363) #14	SOX10 (ENSSAUG00010025364) #15	rnaseh2a (ENSSAUG00010025366) #16	MAST1 (ENSSAUG00010025373) #17	atg4da (ENSSAUG00010025418) #18	SMARCA4 (ENSSAUG00010025426) #19	ENSSAUG00010025464 #20	ap1m2 (ENSSAUG00010025874) #21	CDKN2D (ENSSAUG00010002999) #22	ENSSAUG00010003007 #23	keap1b (ENSSAUG00010003018) #24	s1pr5b (ENSSAUG00010003030) #25	fdx2 (ENSSAUG00010003033) #26	ENSSAUG00010003043 #27	NEU3 (ENSSAUG00010003053) ##30	ENSSAUG00010003057 #31	ENSSAUG00010003063 #32	HMOX1 (ENSSAUG00010003067) #33	rnf11a (ENSSAUG00010003075) #34	NFIX (ENSSAUG00010003122) #35	dand5 (ENSSAUG00010003827) #36	tspan34 (ENSSAUG00010003831) #37	ENSSAUG00010003832	pld6 (ENSSAUG00010003834)
Perciformes	ANCESTRAL SPECIES	2	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.c ##30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Lumpfish	MODERN SPECIES		ENSCLMG00005002697 #10	mb (ENSCLMG00005002698) #9	pane1 (ENSCLMG00005002699) #10	zgc:158803 (ENSCLMG00005002700) #11	smdt1b (ENSCLMG00005002701) #12	ENSCLMG00005002702 #13	ENSCLMG00005002703 #14	ENSCLMG00005002704 #15	rnaseh2a (ENSCLMG00005002705) #16	ENSCLMG00005002707 #17	ENSCLMG00005002709 #17	atg4da (ENSCLMG00005002712) #18	SMARCA4 (ENSCLMG00005002722) #19	ENSCLMG00005003849 #20	ap1m2 (ENSCLMG00005009306) #21	CDKN2D (ENSCLMG00005009709) #22	ENSCLMG00005009710 #23	keap1b (ENSCLMG00005009711) #24	s1pr5b (ENSCLMG00005009713) #25	fdx2 (ENSCLMG00005009714) #26	zglp1 (ENSCLMG00005009715) #27	ENSCLMG00005009716 #28	ENSCLMG00005009717 #31	ENSCLMG00005009718 #32	ENSCLMG00005009719	ENSCLMG00005009720 #33	rnf11a (ENSCLMG00005009721) #34	NFIX (ENSCLMG00005009722) #35	dand5 (ENSCLMG00005009726) #36	tspan34 (ENSCLMG00005009728) #37	RAB3D (ENSCLMG00005009866)
Stickleback	MODERN SPECIES	4	BFAR (ENSGACG00000019548)	ENSGACG00000019547	ENSGACG00000019545	ears2 (ENSGACG00000019531)	ENSGACG00000019529	ENSGACG00000019526	ENSGACG00000019523	GTF3C1 (ENSGACG00000019516)	AXIN1 (ENSGACG00000019513)	thumpd1 (ENSGACG00000019511)	ENSGACG00000019510	ENSGACG00000019507	parn (ENSGACG00000019501)	ENSGACG00000019500 #20	ap1m2 (ENSGACG00000019492) #21	CDKN2D (ENSGACG00000019491) #22	ENSGACG00000019488 #23	ENSGACG00000019487	ENSGACG00000019486	keap1b (ENSGACG00000019479) #24	s1pr5b (ENSGACG00000019478) #25	fdx2 (ENSGACG00000019477) #26	ENSGACG00000019476 #31	ENSGACG00000019475 #32	ENSGACG00000019473 ##32	HMOX1 (ENSGACG00000019469) #33	rnf11a (ENSGACG00000019466) #34	ENSGACG00000019465	NFIX (ENSGACG00000019462) #35	dand5 (ENSGACG00000019460) #36	tspan34 (ENSGACG00000019454) #37
Perciformes_a	ANCESTRAL SPECIES		ENSGT00530000063960.g.b.j.a #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.c ##30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Pike perch	MODERN SPECIES	69	serhl (ENSSLUG00000015075) #7	serhl (ENSSLUG00000015079) #8	mb (ENSSLUG00000015086) #9	ENSSLUG00000015093 #10	zgc:158803 (ENSSLUG00000015101) #11	smdt1b (ENSSLUG00000015111) #12	ENSSLUG00000015124 #14	SOX10 (ENSSLUG00000015215) #15	rnaseh2a (ENSSLUG00000015229) #16	ENSSLUG00000015266 #17	MAST1 (ENSSLUG00000015278) #17	atg4da (ENSSLUG00000015299) #18	SMARCA4 (ENSSLUG00000016006) #19	ENSSLUG00000023970 #20	ap1m2 (ENSSLUG00000024580) #21	CDKN2D (ENSSLUG00000024686) #22	ENSSLUG00000024687 #23	keap1b (ENSSLUG00000024692) #24	s1pr5b (ENSSLUG00000024694) #25	fdx2 (ENSSLUG00000024696) #26	ENSSLUG00000024697 #27	ENSSLUG00000024698 #28	NEU3 (ENSSLUG00000024708) ##30	ENSSLUG00000024731 #32	ENSSLUG00000024733 #31	HMOX1 (ENSSLUG00000024735) #33	rnf11a (ENSSLUG00000024737) #34	NFIX (ENSSLUG00000024749) #35	dand5 (ENSSLUG00000024784) #36	tspan34 (ENSSLUG00000024786) #37	RAB3D (ENSSLUG00000024787)
Channel bull blenny	MODERN SPECIES		serhl (ENSCGOG00000020536) #8	mb (ENSCGOG00000020540) #9	ENSCGOG00000020551 #10	zgc:158803 (ENSCGOG00000020554) #11	smdt1b (ENSCGOG00000020607) #12	ENSCGOG00000020606 #13	ENSCGOG00000020609	ENSCGOG00000020610 #14	SOX10 (ENSCGOG00000020612) #15	rnaseh2a (ENSCGOG00000020614) #16	MAST1 (ENSCGOG00000020651) #17	atg4da (ENSCGOG00000020669) #18	SMARCA4 (ENSCGOG00000020723) #19	ENSCGOG00000021526 #20	ap1m2 (ENSCGOG00000021610) #21	CDKN2D (ENSCGOG00000021666) #22	ENSCGOG00000021669 #23	keap1b (ENSCGOG00000021671) #24	s1pr5b (ENSCGOG00000021673) #25	fdx2 (ENSCGOG00000021674) #26	ENSCGOG00000021676 #27	ENSCGOG00000021677 #28	NEU3 (ENSCGOG00000021678) ##30	ENSCGOG00000021679 #31	ENSCGOG00000021681 #32	ENSCGOG00000021685	HMOX1 (ENSCGOG00000021690) #33	rnf11a (ENSCGOG00000021688) #34	NFIX (ENSCGOG00000021693) #35	dand5 (ENSCGOG00000021720) #36	tspan34 (ENSCGOG00000021722) #37
Ovalentaria	ANCESTRAL SPECIES		ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000181262	ENSGT00940000165343.d ##32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000181262	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000181262	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Amphiprion	ANCESTRAL SPECIES		ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT01090000261423	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000181262	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00950000182916.a.b.a.a.a.b.b.a ##35	ENSGT00530000063926.b #36
Orange clownfish	MODERN SPECIES	17	mb (ENSAPEG00000022796) #9	ENSAPEG00000022807 #10	zgc:158803 (ENSAPEG00000022841) #11	smdt1b (ENSAPEG00000022857) #12	ENSAPEG00000022874 #13	ENSAPEG00000022889 #14	SOX10 (ENSAPEG00000022921) #15	rnaseh2a (ENSAPEG00000022937) #16	ENSAPEG00000022961	MAST1 (ENSAPEG00000022973) #17	ENSAPEG00000023018	atg4da (ENSAPEG00000023035) #18	SMARCA4 (ENSAPEG00000023108) #19	ENSAPEG00000023188 #20	ap1m2 (ENSAPEG00000023204) #21	CDKN2D (ENSAPEG00000023215) #22	ENSAPEG00000023218 #23	keap1b (ENSAPEG00000023223) #24	s1pr5b (ENSAPEG00000023229) #25	fdx2 (ENSAPEG00000023232) #26	ENSAPEG00000023241 #27	ENSAPEG00000023251 #28	NEU3 (ENSAPEG00000023257) #30	ENSAPEG00000023267 #31	ENSAPEG00000023300 #32	ENSAPEG00000023313	HMOX1 (ENSAPEG00000023325) #33	rnf11a (ENSAPEG00000023334) #34	NFIX (ENSAPEG00000023351) #35	dand5 (ENSAPEG00000023394) #36	tspan34 (ENSAPEG00000023403) #37
Clown anemonefish	MODERN SPECIES	1044	mb (ENSAOCG00000008982) #9	pane1 (ENSAOCG00000009012) #10	zgc:158803 (ENSAOCG00000009085) #11	smdt1b (ENSAOCG00000009097) #12	ENSAOCG00000009111 #13	ENSAOCG00000009131 #14	SOX10 (ENSAOCG00000009184) #15	rnaseh2a (ENSAOCG00000009217) #16	ENSAOCG00000009239	ENSAOCG00000009261	MAST1 (ENSAOCG00000009348) #17	atg4da (ENSAOCG00000009366) #18	SMARCA4 (ENSAOCG00000009450) #19	ENSAOCG00000009468 #20	ap1m2 (ENSAOCG00000009505) #21	CDKN2D (ENSAOCG00000009517) #22	ENSAOCG00000002137 #23	keap1b (ENSAOCG00000009527) #24	s1pr5b (ENSAOCG00000009535) #25	fdx2 (ENSAOCG00000009574) #26	ENSAOCG00000009617 #27	ENSAOCG00000009625 #28
Spiny chromis	MODERN SPECIES	88	serhl (ENSAPOG00000000089) #8	mb (ENSAPOG00000003952) #9	pane1 (ENSAPOG00000003964) #10	zgc:158803 (ENSAPOG00000003970) #11	smdt1b (ENSAPOG00000003995) #12	ENSAPOG00000004017 #13	ENSAPOG00000004042 #14	SOX10 (ENSAPOG00000004067) #15	rnaseh2a (ENSAPOG00000004101) #16	MAST1 (ENSAPOG00000004190) #17	atg4da (ENSAPOG00000004347) #18	atg4da (ENSAPOG00000004393) #18	SMARCA4 (ENSAPOG00000004542) #19	ENSAPOG00000004583 #20	ap1m2 (ENSAPOG00000004630) #21	CDKN2D (ENSAPOG00000004642) #22	ENSAPOG00000000116 #23	keap1b (ENSAPOG00000004671) #24	s1pr5b (ENSAPOG00000004684) #25	fdx2 (ENSAPOG00000004692) #26	zglp1 (ENSAPOG00000004713) #27	ENSAPOG00000004728 #28	ENSAPOG00000004745 #30	ENSAPOG00000004766 #31	ENSAPOG00000004786 #32	HMOX1 (ENSAPOG00000004803) #33	rnf11a (ENSAPOG00000004817) #34	NFIX (ENSAPOG00000004937) #35	dand5 (ENSAPOG00000004996) #36	ENSAPOG00000005041 #37
Bicolor damselfish	MODERN SPECIES	239	serhl (ENSSPAG00000013461) #8	mb (ENSSPAG00000013443) #9	ENSSPAG00000013408 #10	zgc:158803 (ENSSPAG00000013318) #11	ENSSPAG00000013302 #12	ENSSPAG00000013289 #13	ENSSPAG00000012865 #14	SOX10 (ENSSPAG00000012804) #15	rnaseh2a (ENSSPAG00000012769) #16	ENSSPAG00000012759	MAST1 (ENSSPAG00000012704) #17	atg4da (ENSSPAG00000012672) #18	SMARCA4 (ENSSPAG00000012533) #19	ENSSPAG00000012489 #20	ap1m2 (ENSSPAG00000012447) #21	CDKN2D (ENSSPAG00000012438) #22	ENSSPAG00000012424 #23	keap1b (ENSSPAG00000012410) #24	s1pr5b (ENSSPAG00000012405) #25	fdx2 (ENSSPAG00000012392) #26	zglp1 (ENSSPAG00000012373) #27	ENSSPAG00000012365 #28	ENSSPAG00000012355	ENSSPAG00000012346	NEU3 (ENSSPAG00000012338) #30	ENSSPAG00000012330 #31	ENSSPAG00000012292 #32	HMOX1 (ENSSPAG00000012255) #33	rnf11a (ENSSPAG00000012240) #34	NFIX (ENSSPAG00000012179) #35	dand5 (ENSSPAG00000012165) #36
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.c.b ##20	ENSGT00940000154819.a.b.c.b.c.a ##20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.c.b ##20	ENSGT00940000154819.a.b.c.b.c.a.a ##20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d.f.a #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.c.b ##20	ENSGT00940000154819.a.b.c.b.c.a.a ##20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d.f.a #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.c.a.a ##20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d.f.a #30	ENSGT00950000182944.A.b.d.f.b #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Burton s mouthbrooder	MODERN SPECIES	734	ENSHBUG00000005167 #10	zgc:158803 (ENSHBUG00000005175) #11	smdt1b (ENSHBUG00000005194) #12	ENSHBUG00000005215 #13	KCNJ4 (ENSHBUG00000005222) #14	ENSHBUG00000005242 #15	rnaseh2a (ENSHBUG00000005267) #16	ENSHBUG00000005303 #17	MAST1 (ENSHBUG00000005318) #17	atg4da (ENSHBUG00000005336) #18	SMARCA4 (ENSHBUG00000005447) #19	ENSHBUG00000005468	ENSHBUG00000005484	ENSHBUG00000006790 ##20	ap1m2 (ENSHBUG00000006969) #21	CDKN2D (ENSHBUG00000006917) #22	ENSHBUG00000006982 #23	keap1b (ENSHBUG00000006989) #24	s1pr5b (ENSHBUG00000006993) #25	fdx2 (ENSHBUG00000007004) #26	ENSHBUG00000007015 #27	ENSHBUG00000007027 #28	ENSHBUG00000007502 #30
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00530000063960.g.b #7	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.c.a.a ##20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d.f.a #30	ENSGT00950000182944.A.b.d.f.b #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
P. nyererei	MODERN SPECIES	643	mb (ENSPNYG00000023965) #9	ENSPNYG00000023967 #10	zgc:158803 (ENSPNYG00000023971) #11	smdt1b (ENSPNYG00000023975) #12	KCNJ4 (ENSPNYG00000023978) #14	ENSPNYG00000023985 #15	rnaseh2a (ENSPNYG00000023986) #16	ENSPNYG00000023987	ENSPNYG00000023988 #17	MAST1 (ENSPNYG00000023989) #17	atg4da (ENSPNYG00000023991) #18	SMARCA4 (ENSPNYG00000023995) #19	ENSPNYG00000024000 ##20	ENSPNYG00000024002 ##20	ap1m2 (ENSPNYG00000024003) #21	CDKN2D (ENSPNYG00000024004) #22	ENSPNYG00000024006 #23	keap1b (ENSPNYG00000024008) #24	s1pr5b (ENSPNYG00000024012) #25	fdx2 (ENSPNYG00000024013) #26	zglp1 (ENSPNYG00000024014) #27	ENSPNYG00000024016 #30	ENSPNYG00000024017 #28
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.c.a.b ##20	ENSGT00940000177737	ENSGT00940000154819.a.b.c.b.c.a.a ##20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d.f.a #30	ENSGT00950000182944.A.b.d.e #30	ENSGT00950000182944.A.b.d.f.b #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00950000182916.a.b.a.a.a.b.b.a ##35
Eastern happy	MODERN SPECIES	18	ENSACLG00000009285	smdt1b (ENSACLG00000009268) #12	ENSACLG00000009244 #13	ENSACLG00000009236	KCNJ4 (ENSACLG00000009229) #14	ENSACLG00000009200 #15	rnaseh2a (ENSACLG00000009169) #16	ENSACLG00000009128 #17	MAST1 (ENSACLG00000009080) #17	atg4da (ENSACLG00000008714) #18	SMARCA4 (ENSACLG00000008638) #19	ENSACLG00000008000 ##20	ENSACLG00000007950	ENSACLG00000007886 ##20	ap1m2 (ENSACLG00000007855) #21	CDKN2D (ENSACLG00000007877) #22	ENSACLG00000007845 #23	keap1b (ENSACLG00000007822) #24	s1pr5b (ENSACLG00000007818) #25	fdx2 (ENSACLG00000007805) #26	ENSACLG00000007782 #27	ENSACLG00000007772 #28	ENSACLG00000007765 #30	NEU3 (ENSACLG00000007762) #30	NEU3 (ENSACLG00000007753) #30	ENSACLG00000007748 #31	ENSACLG00000007737 #32	HMOX1 (ENSACLG00000007729) #33	rnf11a (ENSACLG00000007714) #34	NFIX (ENSACLG00000007600) #35	dand5 (ENSACLG00000007596) #36
Zebra mbuna	MODERN SPECIES	1109	zgc:158803 (ENSMZEG00005023852) #11	smdt1b (ENSMZEG00005023853) #12	ENSMZEG00005023854 #13	KCNJ4 (ENSMZEG00005023855) #14	ENSMZEG00005023856 #15	rnaseh2a (ENSMZEG00005023857) #16	ENSMZEG00005023858 #17	ENSMZEG00005023859 #17	atg4da (ENSMZEG00005023860) #18	SMARCA4 (ENSMZEG00005023861) #19	ENSMZEG00005023862	ENSMZEG00005023863 ##20	ENSMZEG00005023864 ##20	ENSMZEG00005023865	ap1m2 (ENSMZEG00005023866) #21	CDKN2D (ENSMZEG00005023867) #22	ENSMZEG00005023868 #23	keap1b (ENSMZEG00005023869) #24	s1pr5b (ENSMZEG00005023870) #25	fdx2 (ENSMZEG00005023871) #26	ENSMZEG00005023872 #27	ENSMZEG00005023873 #28	ENSMZEG00005023874 #30	NEU3 (ENSMZEG00005023875) #30	NEU3 (ENSMZEG00005023876) #30	ENSMZEG00005023877	NFIX (ENSMZEG00005023878) ##35	dand5 (ENSMZEG00005023879) #36	tspan34 (ENSMZEG00005023880) #37	RAB3D (ENSMZEG00005023881)	pld6 (ENSMZEG00005023882)
Lyretail cichlid	MODERN SPECIES	301	serhl (ENSNBRG00000018375) #7	serhl (ENSNBRG00000018405) #8	mb (ENSNBRG00000018430) #9	ENSNBRG00000018440 #10	zgc:158803 (ENSNBRG00000018476) #11	smdt1b (ENSNBRG00000018490) #12	KCNJ4 (ENSNBRG00000018518) #14	ENSNBRG00000018705 #15	rnaseh2a (ENSNBRG00000018731) #16	MAST1 (ENSNBRG00000018757) #17	atg4da (ENSNBRG00000018815) #18	SMARCA4 (ENSNBRG00000018865) #19	ENSNBRG00000018933 ##20	ENSNBRG00000018963 ##20	ap1m2 (ENSNBRG00000019060) #21	CDKN2D (ENSNBRG00000019096) #22	ENSNBRG00000019117 #23	keap1b (ENSNBRG00000019129) #24	s1pr5b (ENSNBRG00000019138) #25	fdx2 (ENSNBRG00000019149) #26	zglp1 (ENSNBRG00000019171) #27	ENSNBRG00000019197 #28	NEU3 (ENSNBRG00000019205) #30	ENSNBRG00000019216 #31	ENSNBRG00000019223 ##32	HMOX1 (ENSNBRG00000019244) #33	rnf11a (ENSNBRG00000019250) #34	NFIX (ENSNBRG00000019307) #35	dand5 (ENSNBRG00000019412) #36	tspan34 (ENSNBRG00000019428) #37	RAB3D (ENSNBRG00000019454)
Nile tilapia	MODERN SPECIES	18	serhl (ENSONIG00000018014) #7	serhl (ENSONIG00000018016) #8	Mb (ENSONIG00000018018) #9	ENSONIG00000018021 #10	zgc:158803 (ENSONIG00000018025) #11	smdt1b (ENSONIG00000036008) #12	ENSONIG00000018028 #13	KCNJ4 (ENSONIG00000018031) #14	ENSONIG00000018032 #15	rnaseh2a (ENSONIG00000018033) #16	MAST1 (ENSONIG00000018034) #17	atg4da (ENSONIG00000031738) #18	SMARCA4 (ENSONIG00000018040) #19	ENSONIG00000018056 ##20	ap1m2 (ENSONIG00000018060) #21	CDKN2D (ENSONIG00000032001) #22	ENSONIG00000018063 #23	keap1b (ENSONIG00000018066) #24	s1pr5b (ENSONIG00000021227) #25	fdx2 (ENSONIG00000018067) #26	ENSONIG00000033442 #27	ENSONIG00000018068 #28	neu3e (ENSONIG00000018070) #30	NEU3 (ENSONIG00000018069) #30	ENSONIG00000028184	ENSONIG00000018071 #31	ENSONIG00000018073 #32	HMOX1 (ENSONIG00000018076) #33	rnf11a (ENSONIG00000037073) #34	NFIX (ENSONIG00000018077) #35	dand5 (ENSONIG00000018078) #36
Midas cichlid	DUPLICATION
Midas cichlid	MODERN SPECIES	595								ENSACIG00000008912	ENSACIG00000008905	bend5 (ENSACIG00000008860)	ENSACIG00000008842	AGBL4 (ENSACIG00000008810)	elavl4 (ENSACIG00000008793)	dmrta2 (ENSACIG00000008749)	faf1 (ENSACIG00000008712)	ENSACIG00000008680 #22	rnf11b (ENSACIG00000008644)	TTC39A (ENSACIG00000008612)	EPS15 (ENSACIG00000008531)	calr (ENSACIG00000008509)	tor3a (ENSACIG00000008486)	osbpl9 (ENSACIG00000008374)	abl2 (ENSACIG00000008184)	soat1 (ENSACIG00000008124)	ENSACIG00000008065	ENSACIG00000008034	CACNA1E (ENSACIG00000007982)	CEP350 (ENSACIG00000007837)	qsox1 (ENSACIG00000007802)	lhx4 (ENSACIG00000007782)	acbd6 (ENSACIG00000007757)
Midas cichlid	MODERN SPECIES	1199	ENSACIG00000002373	serhl (ENSACIG00000002390) #8	mb (ENSACIG00000002412) #9	ENSACIG00000002427 #10	zgc:158803 (ENSACIG00000002441) #11	smdt1b (ENSACIG00000002454) #12	KCNJ4 (ENSACIG00000002474) #14	ENSACIG00000002643 #15	rnaseh2a (ENSACIG00000002658) #16	MAST1 (ENSACIG00000002693) #17	atg4da (ENSACIG00000003005) #18	SMARCA4 (ENSACIG00000003035) #19	ENSACIG00000003107 ##20	ENSACIG00000003155 ##20	ap1m2 (ENSACIG00000003239) #21	CDKN2D (ENSACIG00000003266) #22	ENSACIG00000003274 #23	keap1b (ENSACIG00000003284) #24	s1pr5b (ENSACIG00000003324) #25	fdx2 (ENSACIG00000003335) #26	zglp1 (ENSACIG00000003353) #27	ENSACIG00000003377 #28	NEU3 (ENSACIG00000003385) #30	ENSACIG00000003395 #30	NEU3 (ENSACIG00000003415) #30	NEU3 (ENSACIG00000003494) #30	ENSACIG00000003519 #31	ENSACIG00000003529	HMOX1 (ENSACIG00000003536) #33	rnf11a (ENSACIG00000003661) #34	NFIX (ENSACIG00000003674) #35
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Oryzias	ANCESTRAL SPECIES	15	ENSGT01030000234820	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Oryzias_a	ANCESTRAL SPECIES	23	ENSGT01030000234820	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00940000165833	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000028999	serhl (ENSORLG00000004149) #8	mb (ENSORLG00000026103) #9	pane1 (ENSORLG00000004119) #10	ENSORLG00000004110	smdt1b (ENSORLG00000004088) #12	ENSORLG00000004082 #13	ENSORLG00000004067 #14	ENSORLG00000024031 #15	rnaseh2a (ENSORLG00000004042) #16	ENSORLG00000022445 #17	atg4da (ENSORLG00000004021) #18	ENSORLG00000003955 #19	ENSORLG00000003886 #20	ap1m2 (ENSORLG00000003846) #21	CDKN2D (ENSORLG00000003842) #22	ENSORLG00000003831 #23	ENSORLG00000027541 #23	keap1b (ENSORLG00000003823) #24	s1pr5b (ENSORLG00000003793) #25	fdx2 (ENSORLG00000029397) #26	ENSORLG00000024901 #27	ENSORLG00000003779 #28	ENSORLG00000003776 #31	ENSORLG00000003769 #32	ENSORLG00000028289	ENSORLG00000003753 #33	rnf11a (ENSORLG00000022986) #34	NFIX (ENSORLG00000003734) #35	dand5 (ENSORLG00000003690) #36	tspan34 (ENSORLG00000003680) #37
Chinese medaka	MODERN SPECIES	272	ENSOSIG00000021706	serhl (ENSOSIG00000021711) #8	mb (ENSOSIG00000021717) #9	pane1 (ENSOSIG00000021730) #10	ENSOSIG00000021748	ENSOSIG00000021753	ENSOSIG00000021756 #13	ENSOSIG00000021766 #14	SOX10 (ENSOSIG00000021784) #15	rnaseh2a (ENSOSIG00000021790) #16	MAST1 (ENSOSIG00000021971) #17	atg4da (ENSOSIG00000022514) #18	SMARCA4 (ENSOSIG00000022566) #19	ENSOSIG00000022637 #20	AP1M2 (ENSOSIG00000022846) #21	CDKN2D (ENSOSIG00000022850) #22	ENSOSIG00000022851	ENSOSIG00000022853	keap1b (ENSOSIG00000022855) #24	s1pr5b (ENSOSIG00000022856) #25	fdx2 (ENSOSIG00000022858) #26	ENSOSIG00000022860 #27	ENSOSIG00000022863 #28	ENSOSIG00000022867 #31	ENSOSIG00000022869 #32	ENSOSIG00000022870 ##32	ENSOSIG00000000088	HMOX1 (ENSOSIG00000000100) #33	rnf11a (ENSOSIG00000000109) #34	NFIX (ENSOSIG00000000182) #35	dand5 (ENSOSIG00000000234) #36
Oryzias_b	ANCESTRAL SPECIES	29	ENSGT01030000234820	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a	ENSGT00390000004368
Javanese ricefish	MODERN SPECIES		septin3 (ENSOJAG00000018354)	ENSOJAG00000018446	serhl (ENSOJAG00000018454) #8	mb (ENSOJAG00000018470) #9	ENSOJAG00000018485 #10	zgc:158803 (ENSOJAG00000018496) #11	smdt1b (ENSOJAG00000018524) #12	ENSOJAG00000018533 #13	ENSOJAG00000018551 #14	SOX10 (ENSOJAG00000018558) #15	rnaseh2a (ENSOJAG00000018576) #16	MAST1 (ENSOJAG00000018779) #17	atg4da (ENSOJAG00000020110) #18	ENSOJAG00000020541 #20	ap1m2 (ENSOJAG00000021653) #21	CDKN2D (ENSOJAG00000021763) #22	ENSOJAG00000021769 #23	keap1b (ENSOJAG00000021777) #24	s1pr5b (ENSOJAG00000021789) #25	fdx2 (ENSOJAG00000021790) #26	ENSOJAG00000021795 #27	ENSOJAG00000021797 #28	ENSOJAG00000021805 #31	ENSOJAG00000021807 #32	HMOX1 (ENSOJAG00000021814) #33	rnf11a (ENSOJAG00000021842) #34	NFIX (ENSOJAG00000021867) #35	dand5 (ENSOJAG00000021902) #36	tspan34 (ENSOJAG00000021920) #37	RAB3D (ENSOJAG00000021948)	pld6 (ENSOJAG00000021963)
Indian medaka	MODERN SPECIES	21	ENSOMEG00000016237	serhl (ENSOMEG00000016261) #8	mb (ENSOMEG00000016290) #9	ENSOMEG00000016315 #10	zgc:158803 (ENSOMEG00000016350) #11	smdt1b (ENSOMEG00000016364) #12	ENSOMEG00000016389 #13	ENSOMEG00000016403 #14	SOX10 (ENSOMEG00000016415) #15	rnaseh2a (ENSOMEG00000016454) #16	MAST1 (ENSOMEG00000000412) #17	atg4da (ENSOMEG00000016515) #18	SMARCA4 (ENSOMEG00000016626) #19	ENSOMEG00000000419 #20	ap1m2 (ENSOMEG00000016714) #21	CDKN2D (ENSOMEG00000016735) #22	ENSOMEG00000016757 #23	fdx2 (ENSOMEG00000000776) #26	ENSOMEG00000016799 #27	ENSOMEG00000016816 #28	keap1b (ENSOMEG00000016855) #24	ENSOMEG00000016869 #31	ENSOMEG00000016899 #32	HMOX1 (ENSOMEG00000016914) #33	rnf11a (ENSOMEG00000016928) #34	NFIX (ENSOMEG00000017131) #35	dand5 (ENSOMEG00000017180) #36	tspan34 (ENSOMEG00000017196) #37	RAB3D (ENSOMEG00000017217)	pld6 (ENSOMEG00000017243)	elof1 (ENSOMEG00000017257)
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Aplocheiloidei	ANCESTRAL SPECIES	32	ENSGT00940000153469.a.a.l	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37	ENSGT00940000157552.s.a
Mangrove rivulus	MODERN SPECIES	138	ENSKMAG00000020046	mb (ENSKMAG00000020029) #9	ENSKMAG00000020017 #10	zgc:158803 (ENSKMAG00000019994) #11	ENSKMAG00000019985 #12	ENSKMAG00000019930	ENSKMAG00000019899 #13	KCNJ4 (ENSKMAG00000019890) #14	SOX10 (ENSKMAG00000019870) #15	rnaseh2a (ENSKMAG00000019829) #16	MAST1 (ENSKMAG00000019681) #17	atg4da (ENSKMAG00000019629) #18	SMARCA4 (ENSKMAG00000019518) #19	ENSKMAG00000019458 #20	ap1m2 (ENSKMAG00000019421) #21	CDKN2D (ENSKMAG00000019404) #22	ENSKMAG00000019395 #23	keap1b (ENSKMAG00000019360) #24	s1pr5b (ENSKMAG00000019347) #25	fdx2 (ENSKMAG00000019336) #26	ENSKMAG00000019325 #27	ENSKMAG00000019315 #28	ENSKMAG00000019305 #30	ENSKMAG00000019283 #31	ENSKMAG00000019262 #32	ENSKMAG00000019249 #33	rnf11a (ENSKMAG00000019233) #34	NFIX (ENSKMAG00000019092) #35	dand5 (ENSKMAG00000019010) #36	tspan34 (ENSKMAG00000018993) #37	ENSKMAG00000018973
Turquoise killifish	MODERN SPECIES	1617	MB (ENSNFUG00015018903) #9	ENSNFUG00015018909	PANE1 (ENSNFUG00015018910) #10	zgc:158803 (ENSNFUG00015018917) #11	C3H22ORF32 (ENSNFUG00015018926) #12	ENSNFUG00015018928 #13	ENSNFUG00015018933	ENSNFUG00015018937 #14	SOX10 (ENSNFUG00015018941) #15	RNASEH2A (ENSNFUG00015018947) #16	MAST1 (ENSNFUG00015019007) #17	atg4da (ENSNFUG00015020523) #18	SMARCA4 (ENSNFUG00015020530) #19	ENSNFUG00015020613 #20	ap1m2 (ENSNFUG00015022583) #21	Cdkn2d (ENSNFUG00015022781) #22	ENSNFUG00015022782 #23	LRRC8E (ENSNFUG00015022783)	DDX5 (ENSNFUG00015022815)	Nfu_g_1_013649 (ENSNFUG00015023104)	ENSNFUG00015023110	TTBK1 (ENSNFUG00015023144)	TPC3 (ENSNFUG00015023162)	TMEM246 (ENSNFUG00015023205)	LGALSLA (ENSNFUG00015023207)	slc29a2 (ENSNFUG00015023212)	PELI1A (ENSNFUG00015023219)	vps54 (ENSNFUG00015023231)	ugp2a (ENSNFUG00015023325)	MDH1 (ENSNFUG00015023534)	otx2a (ENSNFUG00015023572)
Cyprinodontoidei	ANCESTRAL SPECIES	15	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00390000012436.h	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Platyfish	MODERN SPECIES	19	serhl (ENSXMAG00000006867) #8	mb (ENSXMAG00000025476) #9	ENSXMAG00000006894 #10	zgc:158803 (ENSXMAG00000006903) #11	ENSXMAG00000022941 #12	ENSXMAG00000006923 #13	ENSXMAG00000006940 #14	ENSXMAG00000021473 #15	rnaseh2a (ENSXMAG00000006953) #16	ENSXMAG00000027436	MAST1 (ENSXMAG00000006970) #17	atg4da (ENSXMAG00000007016) #18	SMARCA4 (ENSXMAG00000007030) #19	ENSXMAG00000007105 #20	ap1m2 (ENSXMAG00000007151) #21	CDKN2D (ENSXMAG00000022409) #22	ENSXMAG00000007179 #23	keap1b (ENSXMAG00000021448) #24	s1pr5b (ENSXMAG00000019815) #25	fdx2 (ENSXMAG00000005511) #26	ENSXMAG00000020994 #27	ENSXMAG00000019816 #28	ENSXMAG00000026103 #30	ENSXMAG00000027376 #31	ENSXMAG00000025089 #32	ENSXMAG00000025662	HMOX1 (ENSXMAG00000007220) #33	rnf11a (ENSXMAG00000022184) #34	NFIX (ENSXMAG00000007238) #35	dand5 (ENSXMAG00000017343) #36	tspan34 (ENSXMAG00000024059) #37
Poecilia	ANCESTRAL SPECIES	6	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000165343.d ##32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Guppy	DUPLICATION
Guppy	DUPLICATION
Guppy	MODERN SPECIES	456	ENSPREG00000020075	ENSPREG00000020055	ARHGAP39 (ENSPREG00000020019)	ENSPREG00000019993	rad54l (ENSPREG00000019955)	ENSPREG00000019898	EPS15L1 (ENSPREG00000019656)	ENSPREG00000019559	ENSPREG00000019547	SZT2 (ENSPREG00000019474)	hyi (ENSPREG00000019414)	ENSPREG00000019400	ENSPREG00000019384	ENSPREG00000019377	ENSPREG00000019359	ENSPREG00000019157 #22	bend5 (ENSPREG00000019102)	AGBL4 (ENSPREG00000019035)	elavl4 (ENSPREG00000018937)	dmrta2 (ENSPREG00000018881)	faf1 (ENSPREG00000018831)	ENSPREG00000018593 #22	rnf11b (ENSPREG00000018536)	TTC39A (ENSPREG00000018452)	EPS15 (ENSPREG00000018381)	calr (ENSPREG00000018357)	tor3a (ENSPREG00000018330)	osbpl9 (ENSPREG00000018181)	abl2 (ENSPREG00000018109)	soat1 (ENSPREG00000018080)	CACNA1E (ENSPREG00000017980)
Guppy	MODERN SPECIES	456	EPS15L1 (ENSPREG00000019656)	ENSPREG00000019559	ENSPREG00000019547	SZT2 (ENSPREG00000019474)	hyi (ENSPREG00000019414)	ENSPREG00000019400	ENSPREG00000019384	ENSPREG00000019377	ENSPREG00000019359	ENSPREG00000019157 #22	bend5 (ENSPREG00000019102)	AGBL4 (ENSPREG00000019035)	elavl4 (ENSPREG00000018937)	dmrta2 (ENSPREG00000018881)	faf1 (ENSPREG00000018831)	ENSPREG00000018593 #22	rnf11b (ENSPREG00000018536)	TTC39A (ENSPREG00000018452)	EPS15 (ENSPREG00000018381)	calr (ENSPREG00000018357)	tor3a (ENSPREG00000018330)	osbpl9 (ENSPREG00000018181)	abl2 (ENSPREG00000018109)	soat1 (ENSPREG00000018080)	CACNA1E (ENSPREG00000017980)	qsox1 (ENSPREG00000017924)	lhx4 (ENSPREG00000017901)	acbd6 (ENSPREG00000017881)	ENSPREG00000017843	sin3b (ENSPREG00000017772)	haus5 (ENSPREG00000017687)
Guppy	MODERN SPECIES	439	tefm (ENSPREG00000015588)	serhl (ENSPREG00000015573) #8	mb (ENSPREG00000015563) #9	ENSPREG00000015549 #10	zgc:158803 (ENSPREG00000015528) #11	smdt1b (ENSPREG00000015520) #12	ENSPREG00000015510 #13	ENSPREG00000015145 #14	ENSPREG00000015036 #15	rnaseh2a (ENSPREG00000015015) #16	MAST1 (ENSPREG00000014975) #17	atg4da (ENSPREG00000014939) #18	SMARCA4 (ENSPREG00000014823) #19	ENSPREG00000014073 #20	ap1m2 (ENSPREG00000013898) #21	CDKN2D (ENSPREG00000013882) #22	ENSPREG00000013872 #23	keap1b (ENSPREG00000013858) #24	s1pr5b (ENSPREG00000013844) #25	fdx2 (ENSPREG00000013790) #26	ENSPREG00000013782 #27	ENSPREG00000013775 #28	ENSPREG00000013771 #30	ENSPREG00000013765 #31	ENSPREG00000013750 #32	HMOX1 (ENSPREG00000013545) #33	rnf11a (ENSPREG00000013482) #34	NFIX (ENSPREG00000013386) #35	dand5 (ENSPREG00000013337) #36	tspan34 (ENSPREG00000013321) #37	RAB3D (ENSPREG00000013308)
NAME_6	ANCESTRAL SPECIES	47	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT00650000094757	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000165343.d ##32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a #37
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	303	ENSPFOG00000004270	tax1bp3 (ENSPFOG00000004292)	slc1a6 (ENSPFOG00000004310)	ENSPFOG00000004463	pole4 (ENSPFOG00000004484)	ENSPFOG00000004525	ccl25b (ENSPFOG00000004562)	gclm (ENSPFOG00000004600)	dnttip2 (ENSPFOG00000004653)	spata6 (ENSPFOG00000023137)	AGBL4 (ENSPFOG00000004717)	bend5 (ENSPFOG00000004753)	elavl4 (ENSPFOG00000004811)	dmrta2 (ENSPFOG00000004939)	faf1 (ENSPFOG00000004981)	ENSPFOG00000005246 #22	rnf11b (ENSPFOG00000005255)	TTC39A (ENSPFOG00000005356)	EPS15 (ENSPFOG00000005835)	calr (ENSPFOG00000005960)	tor3a (ENSPFOG00000006170)	osbpl9 (ENSPFOG00000006260)	abl2 (ENSPFOG00000006669)	soat1 (ENSPFOG00000006972)	ENSPFOG00000007239	CACNA1E (ENSPFOG00000007877)	CEP350 (ENSPFOG00000008359)	qsox1 (ENSPFOG00000008535)	lhx4 (ENSPFOG00000008745)	lhx4 (ENSPFOG00000008766)	acbd6 (ENSPFOG00000008788)
Amazon molly	MODERN SPECIES	295	serhl (ENSPFOG00000012304) #8	mb (ENSPFOG00000012371) #9	ENSPFOG00000012395 #10	zgc:158803 (ENSPFOG00000012437) #11	smdt1b (ENSPFOG00000012495) #12	ENSPFOG00000012509 #13	ENSPFOG00000021920	ENSPFOG00000012599 #14	ENSPFOG00000012609 #15	rnaseh2a (ENSPFOG00000012627) #16	MAST1 (ENSPFOG00000012690) #17	atg4da (ENSPFOG00000012852) #18	SMARCA4 (ENSPFOG00000012930) #19	ENSPFOG00000013091 #20	ap1m2 (ENSPFOG00000023907) #21	CDKN2D (ENSPFOG00000013301) #22	ENSPFOG00000013303 #23	keap1b (ENSPFOG00000013318) #24	s1pr5b (ENSPFOG00000020141) #25	fdx2 (ENSPFOG00000013381) #26	ENSPFOG00000023655 #28	ENSPFOG00000013392 #30	ENSPFOG00000013394 #31	ENSPFOG00000013403 #32	ENSPFOG00000022531 ##32	HMOX1 (ENSPFOG00000013418) #33	rnf11a (ENSPFOG00000013436) #34	NFIX (ENSPFOG00000013453) #35	dand5 (ENSPFOG00000013550) #36	tspan34 (ENSPFOG00000013561) #37	RAB3D (ENSPFOG00000013657)
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	438														dmrta2 (ENSPLAG00000005407)	faf1 (ENSPLAG00000005394)	ENSPLAG00000005359 #22	rnf11b (ENSPLAG00000005349)	TTC39A (ENSPLAG00000005323)	ENSPLAG00000005144	calr (ENSPLAG00000005102)	tor3a (ENSPLAG00000005070)	osbpl9 (ENSPLAG00000005021)	abl2 (ENSPLAG00000004898)	soat1 (ENSPLAG00000004885)
Sailfin molly	MODERN SPECIES	4										rnaseh2a (ENSPLAG00000018723) #16	MAST1 (ENSPLAG00000018711) #17	atg4da (ENSPLAG00000018657) #18	SMARCA4 (ENSPLAG00000018616) #19	ENSPLAG00000018526 #20	ap1m2 (ENSPLAG00000018476) #21	CDKN2D (ENSPLAG00000018442) #22	ENSPLAG00000018432 #23	keap1b (ENSPLAG00000018426) #24	s1pr5b (ENSPLAG00000018413) #25	fdx2 (ENSPLAG00000018407) #26	ENSPLAG00000018403 #27	ENSPLAG00000018396 #28	ENSPLAG00000018392 #30	ENSPLAG00000018384 #31	ENSPLAG00000018376 #32	HMOX1 (ENSPLAG00000018364) #33	rnf11a (ENSPLAG00000018356) #34	NFIX (ENSPLAG00000018337) #35	dand5 (ENSPLAG00000018314) #36	tspan34 (ENSPLAG00000018292) #37	RAB3D (ENSPLAG00000018052)
NAME_4	ANCESTRAL SPECIES	73	ENSGT00390000010581	ENSGT00530000063960.g.a #8	ENSGT00940000160809 #9	ENSGT00390000017504 #10	ENSGT00950000183213.a.a.a #11	ENSGT00390000017489.b #12	ENSGT00940000157340.k.a #13	ENSGT01030000234586.A.b.a #14	ENSGT00940000158046.a.b #15	ENSGT00390000010768 #16	ENSGT00940000157700.c #17	ENSGT00530000063000.a.a.b.j #18	ENSGT00940000156887.b #19	ENSGT00940000154819.a.b.c.b.d #20	ENSGT00940000159089 #21	ENSGT00940000159801.B #22	ENSGT00940000165948 #23	ENSGT00940000159543 #24	ENSGT01050000244887.A.a.a.a.i #25	ENSGT00940000161143 #26	ENSGT00470000042444 #27	ENSGT00940000157140.b.b.a #28	ENSGT00950000182944.A.b.d #30	ENSGT00940000166140 #31	ENSGT00940000165343.c.a #32	ENSGT00940000165343.d ##32	ENSGT00390000017673.b.k #33	ENSGT00940000163721 #34	ENSGT00950000182916.a.b.a.a.a.b.a.a #35	ENSGT00530000063926.b #36	ENSGT00940000164506.b.a.d #37
Sheepshead minnow	MODERN SPECIES	1076															AP1M2 (ENSCVAG00000019645) #21	CDKN2D (ENSCVAG00000019607) #22	ENSCVAG00000019605 #23	keap1b (ENSCVAG00000019600) #24	s1pr5b (ENSCVAG00000019571) #25	ENSCVAG00000019565	klf4 (ENSCVAG00000019555)	SNCA (ENSCVAG00000019542)	ENSCVAG00000019418	nop14 (ENSCVAG00000019406)	add1 (ENSCVAG00000019337)
Mummichog	MODERN SPECIES	399	serhl (ENSFHEG00000007585) #8	mb (ENSFHEG00000007598) #9	ENSFHEG00000007618 #10	zgc:158803 (ENSFHEG00000007623) #11	smdt1b (ENSFHEG00000007632) #12	ENSFHEG00000007638 #13	KCNJ4 (ENSFHEG00000007650) #14	SOX10 (ENSFHEG00000007675) #15	rnaseh2a (ENSFHEG00000007682) #16	MAST1 (ENSFHEG00000007742) #17	atg4da (ENSFHEG00000007752) #18	SMARCA4 (ENSFHEG00000007902) #19	ENSFHEG00000007919	ENSFHEG00000007933 #20	ap1m2 (ENSFHEG00000007972) #21	CDKN2D (ENSFHEG00000007983) #22	ENSFHEG00000007992 #23	keap1b (ENSFHEG00000007996) #24	s1pr5b (ENSFHEG00000008004) #25	ENSFHEG00000008010	fdx2 (ENSFHEG00000008018) #26	ENSFHEG00000008045 #27	ENSFHEG00000008060 #28
Tiger tail seahorse	MODERN SPECIES	518	ENSHCOG00000016359 #10	ENSHCOG00000000458	zgc:158803 (ENSHCOG00000016391) #11	ENSHCOG00000016398 #12	ENSHCOG00000016404 #13	KCNJ4 (ENSHCOG00000016525) #14	ENSHCOG00000016569 #15	rnaseh2a (ENSHCOG00000016593) #16	ENSHCOG00000016696 #17	MAST1 (ENSHCOG00000016730) #17	atg4da (ENSHCOG00000016797) #18	ENSHCOG00000016821 #19	ENSHCOG00000016836 #19	ENSHCOG00000016845 #20	ap1m2 (ENSHCOG00000016877) #21	CDKN2D (ENSHCOG00000016885) #22	ENSHCOG00000016889 #23	keap1b (ENSHCOG00000016897) #24	s1pr5b (ENSHCOG00000016900) #25	fdx2 (ENSHCOG00000016915) #26	ENSHCOG00000016944 #27	ENSHCOG00000016954 #28	ENSHCOG00000016961 #31	ENSHCOG00000016983 #32	HMOX1 (ENSHCOG00000016995) #33	rnf11a (ENSHCOG00000017008) #34	NFIX (ENSHCOG00000017088) #35	dand5 (ENSHCOG00000017105) #36	tspan34 (ENSHCOG00000017111) #37	RAB3D (ENSHCOG00000017123)	pld6 (ENSHCOG00000017130)