Gnathostomata	ANCESTRAL SPECIES	184															ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949 #25	ENSGT00940000162335	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Euteleostomi	ANCESTRAL SPECIES	245															ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162335	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154518.a #33	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Sarcopterygii	ANCESTRAL SPECIES	221															ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00990000210463	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Theria	ANCESTRAL SPECIES	6	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000159769.b	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Glires	ANCESTRAL SPECIES	8	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000159769.b	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000159769.b	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Sciuridae	ANCESTRAL SPECIES	43											ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Eurasian red squirrel	MODERN SPECIES	18	C4orf45 (ENSSVLG00005009309) #7	RAPGEF2 (ENSSVLG00005010021) #8	ENSSVLG00005013424 #9	ENSSVLG00005013496 #10	FSTL5 (ENSSVLG00005013797) #11	ENSSVLG00005014191 #12	NDST3 (ENSSVLG00005014258) #13	ENSSVLG00005014381 #14	TRAM1L1 (ENSSVLG00005014438) #15	ENSSVLG00005014482 #16	NDST4 (ENSSVLG00005014540) #17	UGT8 (ENSSVLG00005014683) #18	ENSSVLG00005014762 #19	ARSJ (ENSSVLG00005014811) #20	ENSSVLG00005014849 #21	CAMK2D (ENSSVLG00005014926) #22	ANK2 (ENSSVLG00005021727) #23	ENSSVLG00005025975 #24	ENSSVLG00005025976 #25	ZGRF1 (ENSSVLG00005025978) #26	NEUROG2 (ENSSVLG00005025979) #27	ALPK1 (ENSSVLG00005025980) #28	ENSSVLG00005025981 #29	ENSSVLG00005025982 #30	FAM241A (ENSSVLG00005025983) #31	ENSSVLG00005025985 #32	ENSSVLG00005025987 #33	ENPEP (ENSSVLG00005025988) #34	ENSSVLG00005025989 #35	ENSSVLG00005025991 #36	ELOVL6 (ENSSVLG00005025992) #37
Marmotini	ANCESTRAL SPECIES	51											ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Marmotini_b	ANCESTRAL SPECIES	164											ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Arctic ground squirrel	MODERN SPECIES	71									NDST3 (ENSUPAG00010012624) #13	TRAM1L1 (ENSUPAG00010012695) #15	ENSUPAG00010012700	NDST4 (ENSUPAG00010012709) #17	ENSUPAG00010012728	UGT8 (ENSUPAG00010012741) #18	ARSJ (ENSUPAG00010012755) #20	CAMK2D (ENSUPAG00010012766) #22	ANK2 (ENSUPAG00010013870) #23	LARP7 (ENSUPAG00010014284) #25	ENSUPAG00010014334 #26	ENSUPAG00010014384	NEUROG2 (ENSUPAG00010014395) #27	ALPK1 (ENSUPAG00010014402) #28	TIFA (ENSUPAG00010014430) #29	AP1AR (ENSUPAG00010014433) #30	FAM241A (ENSUPAG00010014462) #31
Squirrel	MODERN SPECIES	163											ENSSTOG00000034598	NDST4 (ENSSTOG00000013994) #17	UGT8 (ENSSTOG00000005626) #18	ENSSTOG00000024888	ARSJ (ENSSTOG00000015417) #20	CAMK2D (ENSSTOG00000001689) #22	ANK2 (ENSSTOG00000001648) #23	LARP7 (ENSSTOG00000011789) #25	ENSSTOG00000025752 #26	ENSSTOG00000011761	NEUROG2 (ENSSTOG00000011758) #27	ALPK1 (ENSSTOG00000023490) #28	TIFA (ENSSTOG00000024540) #29	AP1AR (ENSSTOG00000011726) #30	FAM241A (ENSSTOG00000026762) #31	ENSSTOG00000025728 #33	ENPEP (ENSSTOG00000019984) #34	ELOVL6 (ENSSTOG00000013096) #37	LRIT3 (ENSSTOG00000019825)	RRH (ENSSTOG00000026445)	GAR1 (ENSSTOG00000005577)
Alpin marmot	MODERN SPECIES	14									NDST3 (ENSMMMG00000012053) #13	ENSMMMG00000012041	TRAM1L1 (ENSMMMG00000012035) #15	ENSMMMG00000012009	NDST4 (ENSMMMG00000011995) #17	UGT8 (ENSMMMG00000011973) #18	ARSJ (ENSMMMG00000011955) #20	CAMK2D (ENSMMMG00000011571) #22	ENSMMMG00000011465	ENSMMMG00000011445 #23	ENSMMMG00000011375 #23	LARP7 (ENSMMMG00000011295) #25	ENSMMMG00000011252 #26	ENSMMMG00000011234	NEUROG2 (ENSMMMG00000011232) #27	ALPK1 (ENSMMMG00000011177) #28	TIFA (ENSMMMG00000011166) #29	AP1AR (ENSMMMG00000011129) #30	ENSMMMG00000011118 #31	ENSMMMG00000011114	ENSMMMG00000011061 #33	ENPEP (ENSMMMG00000011011) #34	ENSMMMG00000011001
Rodentia_B	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Myomorpha	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Muroidea	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Muroidea_A	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00800000124172.e	ENSGT00800000124172.f	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000167903	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00800000124172.e	ENSGT00800000124172.f	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000167903	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000027603	1810037I17Rik (ENSPEMG00000024687)	Usp53 (ENSPEMG00000022287)	Myoz2 (ENSPEMG00000011164)	Synpo2 (ENSPEMG00000017188)	Sec24d (ENSPEMG00000011288)	Mettl14 (ENSPEMG00000023538)	Prss12 (ENSPEMG00000008670)	Ndst3 (ENSPEMG00000021875) #13	Tram1l1 (ENSPEMG00000002510) #15	Ndst4 (ENSPEMG00000020444) #17	Ugt8a (ENSPEMG00000016253) #18	ENSPEMG00000025456	ENSPEMG00000024508	Arsj (ENSPEMG00000013281) #20	ENSPEMG00000015780 #22	Ank2 (ENSPEMG00000022242) #23	ENSPEMG00000013978 #25	ENSPEMG00000012463 #26	ENSPEMG00000008182	Neurog2 (ENSPEMG00000027945) #27	Alpk1 (ENSPEMG00000004361) #28	Tifa (ENSPEMG00000024630) #29	Ap1ar (ENSPEMG00000025779) #30	ENSPEMG00000026286 #31	Pitx2 (ENSPEMG00000026986) #33	Enpep (ENSPEMG00000012340) #34	Elovl6 (ENSPEMG00000030330) #37	Egf (ENSPEMG00000016237)	Lrit3 (ENSPEMG00000008291)	Rrh (ENSPEMG00000008715)
Prairie vole	MODERN SPECIES	8	ENSMOCG00000000916	ENSMOCG00000002308	1810037I17Rik (ENSMOCG00000008059)	ENSMOCG00000012858	Myoz2 (ENSMOCG00000019483)	Synpo2 (ENSMOCG00000012146)	Sec24d (ENSMOCG00000003445)	Mettl14 (ENSMOCG00000014583)	Prss12 (ENSMOCG00000021648)	Ndst3 (ENSMOCG00000020696) #13	Tram1l1 (ENSMOCG00000000986) #15	ENSMOCG00000000758	Ndst4 (ENSMOCG00000009321) #17	Ugt8a (ENSMOCG00000015965) #18	Arsj (ENSMOCG00000016673) #20	ENSMOCG00000014414 #22	ENSMOCG00000018117 #23	ENSMOCG00000014933	ENSMOCG00000012519 #25	ENSMOCG00000019301 #26	ENSMOCG00000016693	Neurog2 (ENSMOCG00000001166) #27	Alpk1 (ENSMOCG00000019085) #28	Tifa (ENSMOCG00000004620) #29	ENSMOCG00000012032	Fam241a (ENSMOCG00000012965) #31	ENSMOCG00000000185	Enpep (ENSMOCG00000015521) #34	Elovl6 (ENSMOCG00000001659) #37	ENSMOCG00000006880	Lrit3 (ENSMOCG00000012841)
Lesser Egyptian jerboa	MODERN SPECIES	67	1810037I17Rik (ENSJJAG00000014222)	ENSJJAG00000019057	Myoz2 (ENSJJAG00000017680)	Synpo2 (ENSJJAG00000012840)	Sec24d (ENSJJAG00000009995)	Mettl14 (ENSJJAG00000010557)	Prss12 (ENSJJAG00000012007)	Ndst3 (ENSJJAG00000002218) #13	Tram1l1 (ENSJJAG00000020762) #15	ENSJJAG00000009441	ENSJJAG00000001081	ENSJJAG00000021020	Ndst4 (ENSJJAG00000014513) #17	Ugt8a (ENSJJAG00000012775) #18	Arsj (ENSJJAG00000021328) #20	ENSJJAG00000016290 #22	ENSJJAG00000011390 #23	ENSJJAG00000000257 #25	ENSJJAG00000020978 #26	ENSJJAG00000019861	Neurog2 (ENSJJAG00000000627) #27	Alpk1 (ENSJJAG00000012764) #28	ENSJJAG00000006863	Tifa (ENSJJAG00000014646) #29	Ap1ar (ENSJJAG00000021104) #30	Fam241a (ENSJJAG00000020356) #31	ENSJJAG00000018533	Enpep (ENSJJAG00000012504) #34	Elovl6 (ENSJJAG00000015160) #37	Egf (ENSJJAG00000010062)	Lrit3 (ENSJJAG00000017146)
Kangaroo rat	MODERN SPECIES	389				Pde5a (ENSDORG00000013507)	Fabp2 (ENSDORG00000027810)	ENSDORG00000003913	Myoz2 (ENSDORG00000008904)	Synpo2 (ENSDORG00000008902)	Sec24d (ENSDORG00000016009)	Mettl14 (ENSDORG00000016008)	Prss12 (ENSDORG00000013716)	Ndst3 (ENSDORG00000004309) #13	ENSDORG00000007384 #17	Ugt8a (ENSDORG00000026122) #18	Arsj (ENSDORG00000016246) #20	ENSDORG00000009228 #22	ENSDORG00000006825 #23	ENSDORG00000008896 #25	ENSDORG00000023146 #26	ENSDORG00000029578	Neurog2 (ENSDORG00000026770) #27	Alpk1 (ENSDORG00000012751) #28	Tifa (ENSDORG00000028757) #29	ENSDORG00000025544	ENSDORG00000029098 #31	ENSDORG00000002323	Enpep (ENSDORG00000016065) #34	Elovl6 (ENSDORG00000029654) #37	ENSDORG00000000490	Lrit3 (ENSDORG00000027458)	Rrh (ENSDORG00000000486)
Lagomorpha	ANCESTRAL SPECIES	45											ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000162335	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Rabbit	MODERN SPECIES	6	ENSOCUG00000030197	ENSOCUG00000035926	ENSOCUG00000036673	ENSOCUG00000038661	PABPC4L (ENSOCUG00000028226)	ENSOCUG00000033772	PRSS12 (ENSOCUG00000013625)	NDST3 (ENSOCUG00000009952) #13	ENSOCUG00000038669	TRAM1L1 (ENSOCUG00000003846) #15	ENSOCUG00000003691	ENSOCUG00000002295	NDST4 (ENSOCUG00000007796) #17	UGT8 (ENSOCUG00000015037) #18	ENSOCUG00000030939 #20	CAMK2D (ENSOCUG00000023650) #22	ENSOCUG00000035520	ANK2 (ENSOCUG00000010618) #23	ENSOCUG00000021222	LARP7 (ENSOCUG00000007073) #25	ZGRF1 (ENSOCUG00000007057) #26	NEUROG2 (ENSOCUG00000007063) #27	ENSOCUG00000010848	ALPK1 (ENSOCUG00000024991) #28	TIFA (ENSOCUG00000017578) #29	AP1AR (ENSOCUG00000004413) #30	FAM241A (ENSOCUG00000011383) #31	PITX2 (ENSOCUG00000012685)	ENPEP (ENSOCUG00000016264) #34	ELOVL6 (ENSOCUG00000013069) #37	EGF (ENSOCUG00000016388)
Primates	ANCESTRAL SPECIES	10	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00940000153395.a.rb.b	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570.a	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Lemuriformes_a	ANCESTRAL SPECIES	108													ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Coquerels sifaka	MODERN SPECIES	612													NDST4 (ENSPCOG00000023533) #17	UGT8 (ENSPCOG00000020398) #18	ARSJ (ENSPCOG00000014263) #20	CAMK2D (ENSPCOG00000022926) #22	ANK2 (ENSPCOG00000020061) #23	LARP7 (ENSPCOG00000023946) #25	ENSPCOG00000019293 #26	ENSPCOG00000019840	ALPK1 (ENSPCOG00000024686) #28	AP1AR (ENSPCOG00000021453) #30	FAM241A (ENSPCOG00000015336) #31	PITX2 (ENSPCOG00000022739)	ENPEP (ENSPCOG00000023964) #34	ENSPCOG00000010114	ELOVL6 (ENSPCOG00000017024) #37	EGF (ENSPCOG00000019019)	LRIT3 (ENSPCOG00000023561)	GAR1 (ENSPCOG00000027049)	ENSPCOG00000015799
Greater bamboo lemur	MODERN SPECIES	277						ENSPSMG00000010220	ENSPSMG00000010151	PNCK (ENSPSMG00000010066)	DUSP9 (ENSPSMG00000010039)	ZFP92 (ENSPSMG00000010034)	TREX2 (ENSPSMG00000010030)	HAUS7 (ENSPSMG00000010024)	BGN (ENSPSMG00000009998)	ATP2B3 (ENSPSMG00000009254)	ARSJ (ENSPSMG00000008750) #20	CAMK2D (ENSPSMG00000007663) #22	ANK2 (ENSPSMG00000005110) #23	LARP7 (ENSPSMG00000003620) #25
Bushbaby	MODERN SPECIES	244												ENSOGAG00000001957	NDST4 (ENSOGAG00000017087) #17	UGT8 (ENSOGAG00000017086) #18	ARSJ (ENSOGAG00000028008) #20	CAMK2D (ENSOGAG00000010231) #22	ENSOGAG00000005817 #23	LARP7 (ENSOGAG00000001643) #25	ENSOGAG00000033154 #26	ENSOGAG00000001639	NEUROG2 (ENSOGAG00000029479) #27	ALPK1 (ENSOGAG00000001634) #28	TIFA (ENSOGAG00000001633) #29	AP1AR (ENSOGAG00000001631) #30	FAM241A (ENSOGAG00000008435) #31	PITX2 (ENSOGAG00000029102)	ENPEP (ENSOGAG00000004273) #34	ELOVL6 (ENSOGAG00000004708) #37	EGF (ENSOGAG00000004702)	LRIT3 (ENSOGAG00000032858)	RRH (ENSOGAG00000004696)
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k.a	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k.a	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000154888.j	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k.a	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000154888.j	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k.a	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37
Human	MODERN SPECIES	16	MAD2L1 (ENSG00000164109)	PDE5A (ENSG00000138735)	FABP2 (ENSG00000145384)	C4orf3 (ENSG00000164096)	USP53 (ENSG00000145390)	MYOZ2 (ENSG00000172399)	SYNPO2 (ENSG00000172403)	SEC24D (ENSG00000150961)	METTL14 (ENSG00000145388)	PRSS12 (ENSG00000164099)	NDST3 (ENSG00000164100) #13	TRAM1L1 (ENSG00000174599) #15	NDST4 (ENSG00000138653) #17	UGT8 (ENSG00000174607) #18	ARSJ (ENSG00000180801) #20	CAMK2D (ENSG00000145349) #22	ANK2 (ENSG00000145362) #23	LARP7 (ENSG00000174720) #25	ZGRF1 (ENSG00000138658) #26	NEUROG2 (ENSG00000178403) #27	ALPK1 (ENSG00000073331) #28	TIFA (ENSG00000145365) #29	AP1AR (ENSG00000138660) #30	FAM241A (ENSG00000174749) #31	PITX2 (ENSG00000164093)	ENPEP (ENSG00000138792) #34	ELOVL6 (ENSG00000170522) #37	EGF (ENSG00000138798)	LRIT3 (ENSG00000183423)	RRH (ENSG00000180245)	GAR1 (ENSG00000109534)
Pan	ANCESTRAL SPECIES	7	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000157200.e.b	ENSGT00940000160665 #13	ENSGT00390000012959.b.s.b	ENSGT00940000159343.b	ENSGT01040000241132	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000155193.a.a.f.b.a.a	ENSGT00390000014818.i.a.a	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000154888.j	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k.a	ENSGT00940000162789
Bonobo	MODERN SPECIES	17	ENSPPAG00000039685	USP53 (ENSPPAG00000036629)	MYOZ2 (ENSPPAG00000036517)	SYNPO2 (ENSPPAG00000035039)	SEC24D (ENSPPAG00000028599)	METTL14 (ENSPPAG00000029930)	PRSS12 (ENSPPAG00000035391)	ENSPPAG00000031601	NDST3 (ENSPPAG00000031007) #13	ENSPPAG00000032949	ENSPPAG00000028200	ENSPPAG00000019617	NDST4 (ENSPPAG00000039280) #17	UGT8 (ENSPPAG00000009777) #18	ARSJ (ENSPPAG00000040500) #20	CAMK2D (ENSPPAG00000030941) #22	ANK2 (ENSPPAG00000037570) #23	ENSPPAG00000016126	ENSPPAG00000037938	LARP7 (ENSPPAG00000038420) #25	ZGRF1 (ENSPPAG00000002164) #26	ENSPPAG00000042238	ENSPPAG00000005536	ALPK1 (ENSPPAG00000020703) #28	ENSPPAG00000033509	ENSPPAG00000002777 #29	AP1AR (ENSPPAG00000029027) #30	ENSPPAG00000006440 #31	ENSPPAG00000023243	ENSPPAG00000040833	ENPEP (ENSPPAG00000031975) #34
Gorilla	MODERN SPECIES	17	FABP2 (ENSGGOG00000027841)	C4orf3 (ENSGGOG00000006489)	USP53 (ENSGGOG00000006480)	MYOZ2 (ENSGGOG00000010448)	SYNPO2 (ENSGGOG00000012942)	SEC24D (ENSGGOG00000002496)	METTL14 (ENSGGOG00000016449)	CEP170 (ENSGGOG00000016268)	PRSS12 (ENSGGOG00000002810)	NDST3 (ENSGGOG00000034831) #13	ENSGGOG00000008099	TRAM1L1 (ENSGGOG00000000128) #15	NDST4 (ENSGGOG00000000466) #17	UGT8 (ENSGGOG00000026542) #18	ARSJ (ENSGGOG00000012700) #20	CAMK2D (ENSGGOG00000022729) #22	ANK2 (ENSGGOG00000028608) #23	ENSGGOG00000026585	ENSGGOG00000022391	ENSGGOG00000006438 #25	ENSGGOG00000023567 #25	ZGRF1 (ENSGGOG00000022552) #26	NEUROG2 (ENSGGOG00000038276) #27	ENSGGOG00000025016	ENSGGOG00000041153	ALPK1 (ENSGGOG00000006662) #28	RTEL1 (ENSGGOG00000042405)	TIFA (ENSGGOG00000041642) #29	AP1AR (ENSGGOG00000009698) #30	FAM241A (ENSGGOG00000023800) #31	ENSGGOG00000043708
Orangutan	MODERN SPECIES	17	PDE5A (ENSPPYG00000015028)	FABP2 (ENSPPYG00000015027)	C4H4orf3 (ENSPPYG00000034080)	USP53 (ENSPPYG00000015025)	MYOZ2 (ENSPPYG00000015023)	SYNPO2 (ENSPPYG00000015022)	SEC24D (ENSPPYG00000015021)	METTL14 (ENSPPYG00000015020)	PRSS12 (ENSPPYG00000015019)	NDST3 (ENSPPYG00000015018) #13	TRAM1L1 (ENSPPYG00000015017) #15	ENSPPYG00000034491	NDST4 (ENSPPYG00000015016) #17	UGT8 (ENSPPYG00000015015) #18	ENSPPYG00000031959 #20	CAMK2D (ENSPPYG00000015013) #22	ANK2 (ENSPPYG00000015012) #23	ENSPPYG00000039052	ENSPPYG00000039420	ENSPPYG00000033011	LARP7 (ENSPPYG00000015010) #25	ZGRF1 (ENSPPYG00000015009) #26	NEUROG2 (ENSPPYG00000015008) #27	ALPK1 (ENSPPYG00000015007) #28	TIFA (ENSPPYG00000015006) #29	AP1AR (ENSPPYG00000015005) #30	FAM241A (ENSPPYG00000033722) #31	PITX2 (ENSPPYG00000039098)	ENPEP (ENSPPYG00000015002) #34	ENSPPYG00000036202	ENSPPYG00000015001
Gibbon	MODERN SPECIES	8	ENSNLEG00000033338	ENSNLEG00000001526	PLPP1 (ENSNLEG00000001513)	MTREX (ENSNLEG00000001494)	DHX29 (ENSNLEG00000001232)	CCNO (ENSNLEG00000001224)	MCIDAS (ENSNLEG00000001216)	GPX8 (ENSNLEG00000001206)	CDC20B (ENSNLEG00000001187)	GZMA (ENSNLEG00000001174)	GZMK (ENSNLEG00000001158)	ESM1 (ENSNLEG00000001154)	NDST4 (ENSNLEG00000016194) #17	UGT8 (ENSNLEG00000016209) #18	ARSJ (ENSNLEG00000016215) #20	CAMK2D (ENSNLEG00000016216) #22	ANK2 (ENSNLEG00000016262) #23	ENSNLEG00000033262 #10	LARP7 (ENSNLEG00000016354) #25	ZGRF1 (ENSNLEG00000016387) #26	NEUROG2 (ENSNLEG00000031074) #27	ENSNLEG00000033860	ALPK1 (ENSNLEG00000016426) #28	TIFA (ENSNLEG00000027987) #29	AP1AR (ENSNLEG00000027136) #30	FAM241A (ENSNLEG00000016462) #31	ENSNLEG00000030659	ENSNLEG00000016466	ENPEP (ENSNLEG00000016485) #34	ENSNLEG00000016531	ELOVL6 (ENSNLEG00000016533) #37
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570.c	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000153395.a.rb.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570.c	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00390000012692.e
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00800000124172	ENSGT00530000064570.c	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000154550.a.f.i	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00910000148089	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00390000012692.e
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00800000124172	ENSGT00530000064570.c	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000154550.a.f.i	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00910000148089	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00390000001376.ab.a	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37
Cercopithecinae_d	ANCESTRAL SPECIES	62	ENSGT00800000124172	ENSGT00530000064570.c	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000154550.a.f.i	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00910000148089	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00390000001376.ab.a	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT00670000098076.i.a.b.h.a
Sooty mangabey	MODERN SPECIES	348	FABP2 (ENSCATG00000029827)	ENSCATG00000029489	USP53 (ENSCATG00000039375)	MYOZ2 (ENSCATG00000032371)	SYNPO2 (ENSCATG00000024146)	SEC24D (ENSCATG00000038872)	METTL14 (ENSCATG00000040790)	PRSS12 (ENSCATG00000042902)	NDST3 (ENSCATG00000041328) #13	TRAM1L1 (ENSCATG00000012900) #15	ENSCATG00000041278	NDST4 (ENSCATG00000032269) #17	UGT8 (ENSCATG00000042119) #18	ENSCATG00000009333	ARSJ (ENSCATG00000041348) #20	CAMK2D (ENSCATG00000036248) #22	ENSCATG00000045216	ANK2 (ENSCATG00000034561) #23	ENSCATG00000035943	LARP7 (ENSCATG00000043535) #25	ZGRF1 (ENSCATG00000030107) #26	NEUROG2 (ENSCATG00000012534) #27	ENSCATG00000044643	ALPK1 (ENSCATG00000038833) #28	TIFA (ENSCATG00000003075) #29	AP1AR (ENSCATG00000029032) #30	FAM241A (ENSCATG00000015786) #31	ENSCATG00000034490	PITX2 (ENSCATG00000024726)	ENPEP (ENSCATG00000035878) #34	ENSCATG00000039213
Drill	MODERN SPECIES	1231																CAMK2D (ENSMLEG00000000153) #22	ANK2 (ENSMLEG00000032525) #23	ENSMLEG00000044193	ENSMLEG00000035367	LARP7 (ENSMLEG00000026154) #25	ZGRF1 (ENSMLEG00000037848) #26	NEUROG2 (ENSMLEG00000000201) #27	ENSMLEG00000029759	ALPK1 (ENSMLEG00000039714) #28	ENSMLEG00000032150	TIFA (ENSMLEG00000025995) #29	AP1AR (ENSMLEG00000043076) #30	ENSMLEG00000000790 #31	ENSMLEG00000001007 #31	ENSMLEG00000041447
Macaca	ANCESTRAL SPECIES	18	ENSGT00800000124172	ENSGT00530000064570.c	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000154550.a.f.i	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00910000148089	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #28	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000154185.k	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00390000012692.e
Pig-tailed macaque	MODERN SPECIES	126	USP53 (ENSMNEG00000035179)	MYOZ2 (ENSMNEG00000021579)	SYNPO2 (ENSMNEG00000030337)	SEC24D (ENSMNEG00000035401)	METTL14 (ENSMNEG00000032737)	ENSMNEG00000043767	PRSS12 (ENSMNEG00000043650)	NDST3 (ENSMNEG00000033435) #13	TRAM1L1 (ENSMNEG00000025342) #15	ENSMNEG00000033966	ENSMNEG00000042964	NDST4 (ENSMNEG00000035599) #17	UGT8 (ENSMNEG00000036824) #18	ENSMNEG00000022132	ARSJ (ENSMNEG00000032901) #20	CAMK2D (ENSMNEG00000045488) #22	ANK2 (ENSMNEG00000039312) #23	ENSMNEG00000032481	LARP7 (ENSMNEG00000034758) #25	ZGRF1 (ENSMNEG00000031300) #26	NEUROG2 (ENSMNEG00000006870) #27	ENSMNEG00000036856	ALPK1 (ENSMNEG00000035578) #28	ENSMNEG00000037689	TIFA (ENSMNEG00000018769) #29	AP1AR (ENSMNEG00000033623) #30	FAM241A (ENSMNEG00000036860) #31	ENSMNEG00000038407	ENSMNEG00000044225	PITX2 (ENSMNEG00000037961)	ENPEP (ENSMNEG00000032569) #34
Rhinopithecus	ANCESTRAL SPECIES	994															ENSGT00940000159954 #20	ENSGT00940000155150.a #22
Golden snub-nosed monkey	MODERN SPECIES	2279															ARSJ (ENSRROG00000035608) #20	CAMK2D (ENSRROG00000000189) #22
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Cebidae	ANCESTRAL SPECIES	4	ENSGT00800000124172.d	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000163819.b	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000159769.b.c	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b.s #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223.i
Cebidae_a	ANCESTRAL SPECIES	21	ENSGT00800000124172.d	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000163819.b	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000159769.b.c	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b.s #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b.k #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223.i	ENSGT00930000151042
Capuchin	MODERN SPECIES	17					ENSCCAG00000035980	SEC24D (ENSCCAG00000024324)	METTL14 (ENSCCAG00000037076)	PRSS12 (ENSCCAG00000027059)	ENSCCAG00000004975	NDST3 (ENSCCAG00000027057) #13	ENSCCAG00000013743	NDST4 (ENSCCAG00000027122) #17	UGT8 (ENSCCAG00000029029) #18	ARSJ (ENSCCAG00000025579) #20	ENSCCAG00000028679	CAMK2D (ENSCCAG00000032019) #22	ANK2 (ENSCCAG00000026200) #23	ENSCCAG00000026787 #25	ZGRF1 (ENSCCAG00000025909) #26	NEUROG2 (ENSCCAG00000020190) #27	ALPK1 (ENSCCAG00000025634) #28	AP1AR (ENSCCAG00000030915) #30	FAM241A (ENSCCAG00000018991) #31	ENSCCAG00000034929	ENSCCAG00000033747	ENSCCAG00000026848	PITX2 (ENSCCAG00000026914)	ENPEP (ENSCCAG00000026144) #34	ENSCCAG00000021722	ENSCCAG00000024902	ELOVL6 (ENSCCAG00000037435) #37
Tarsier	MODERN SPECIES	6957															ENSTSYG00000031713	CAMK2D (ENSTSYG00000001246) #22
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000163685	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Suina	ANCESTRAL SPECIES	22	ENSGT00940000163685	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Pig	MODERN SPECIES	16	SYNPO2 (ENSSSCG00000009111)	SEC24D (ENSSSCG00000009112)	METTL14 (ENSSSCG00000009113)	PRSS12 (ENSSSCG00000009114)	NDST3 (ENSSSCG00000009115) #13	ENSSSCG00000009116	ENSSSCG00000062356	TRAM1L1 (ENSSSCG00000036158) #15	NDST4 (ENSSSCG00000033834) #17	UGT8 (ENSSSCG00000031904) #18	ENSSSCG00000052698	ENSSSCG00000041159	ENSSSCG00000053761 #36	ARSJ (ENSSSCG00000009122) #20	ENSSSCG00000063552	CAMK2D (ENSSSCG00000009123) #22	ENSSSCG00000009125 #23	ENSSSCG00000063375 #23	ENSSSCG00000055533	LARP7 (ENSSSCG00000009119) #25	ZGRF1 (ENSSSCG00000009120) #26	NEUROG2 (ENSSSCG00000033479) #27	ALPK1 (ENSSSCG00000031348) #28	TIFA (ENSSSCG00000009129) #29	AP1AR (ENSSSCG00000009128) #30	FAM241A (ENSSSCG00000055744) #31	PITX2 (ENSSSCG00000034708)	ENPEP (ENSSSCG00000009132) #34	ENSSSCG00000009133	ELOVL6 (ENSSSCG00000036236) #37	ENSSSCG00000042004
Chacoan peccary	MODERN SPECIES	119	ENSCWAG00000017457	FABP2 (ENSCWAG00000017424)	C4orf3 (ENSCWAG00000017402)	USP53 (ENSCWAG00000017367)	MYOZ2 (ENSCWAG00000017316)	SYNPO2 (ENSCWAG00000017183)	SEC24D (ENSCWAG00000017115)	METTL14 (ENSCWAG00000017035)	PRSS12 (ENSCWAG00000016952)	NDST3 (ENSCWAG00000016874) #13	TRAM1L1 (ENSCWAG00000016862) #15	ENSCWAG00000016840	NDST4 (ENSCWAG00000016745) #17	UGT8 (ENSCWAG00000016697) #18	ARSJ (ENSCWAG00000016636) #20	CAMK2D (ENSCWAG00000016305) #22	ANK2 (ENSCWAG00000011988) #23
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000163685	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003.j	ENSGT00550000075003.i	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000154502.q.b	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003.j	ENSGT00550000075003.i	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000154502.q.b	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000159769.b	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627
Narwhal	MODERN SPECIES	307	ENSMMNG00015012139	USP53 (ENSMMNG00015012113)	MYOZ2 (ENSMMNG00015012102)	SYNPO2 (ENSMMNG00015012079)	SEC24D (ENSMMNG00015012033)	METTL14 (ENSMMNG00015011950)	PRSS12 (ENSMMNG00015011918)	NDST3 (ENSMMNG00015011829) #13	TRAM1L1 (ENSMMNG00015011817) #15	ENSMMNG00015011803	NDST4 (ENSMMNG00015011789) #17	UGT8 (ENSMMNG00015011772) #18	ENSMMNG00015011754	ENSMMNG00015011738	ARSJ (ENSMMNG00015011719) #20	CAMK2D (ENSMMNG00015011648) #22	ENSMMNG00015011574	ANK2 (ENSMMNG00015010426) #23	LARP7 (ENSMMNG00015010021) #25	ZGRF1 (ENSMMNG00015010010) #26	NEUROG2 (ENSMMNG00015009986) #27	ALPK1 (ENSMMNG00015009971) #28	TIFA (ENSMMNG00015009945) #29	AP1AR (ENSMMNG00015009932) #30	FAM241A (ENSMMNG00015009916) #31	ENSMMNG00015009909	ENSMMNG00015010807	PITX2 (ENSMMNG00015010759)	ENPEP (ENSMMNG00015010701) #34	ELOVL6 (ENSMMNG00015010678) #37	EGF (ENSMMNG00015010614)
Vaquita	MODERN SPECIES	16	USP53 (ENSPSNG00000000534)	MYOZ2 (ENSPSNG00000000556)	SYNPO2 (ENSPSNG00000000581)	SEC24D (ENSPSNG00000000727)	ENSPSNG00000000831	ENSPSNG00000000845	PRSS12 (ENSPSNG00000000873)	NDST3 (ENSPSNG00000000913) #13	TRAM1L1 (ENSPSNG00000000943) #15	NDST4 (ENSPSNG00000000997) #17	ENSPSNG00000001031	UGT8 (ENSPSNG00000001045) #18	PCBD1 (ENSPSNG00000001067)	ENSPSNG00000001100	ARSJ (ENSPSNG00000001143) #20	CAMK2D (ENSPSNG00000001260) #22	ANK2 (ENSPSNG00000002558) #23	LARP7 (ENSPSNG00000004277) #25	ZGRF1 (ENSPSNG00000004382) #26	NEUROG2 (ENSPSNG00000004494) #27	ALPK1 (ENSPSNG00000004518) #28	TIFA (ENSPSNG00000004555) #29	AP1AR (ENSPSNG00000004571) #30	FAM241A (ENSPSNG00000004608) #31	ENSPSNG00000004627	ENSPSNG00000004644	PITX2 (ENSPSNG00000004709)	ENPEP (ENSPSNG00000004770) #34	ELOVL6 (ENSPSNG00000004817) #37	EGF (ENSPSNG00000005048)	LRIT3 (ENSPSNG00000005437)
Sperm whale	MODERN SPECIES	18	ENSPCTG00005007026	USP53 (ENSPCTG00005006925)	MYOZ2 (ENSPCTG00005006902)	ENSPCTG00005006878	SYNPO2 (ENSPCTG00005006802)	SEC24D (ENSPCTG00005006519)	METTL14 (ENSPCTG00005006463)	PRSS12 (ENSPCTG00005006417)	NDST3 (ENSPCTG00005006358) #13	TRAM1L1 (ENSPCTG00005006311) #15	ENSPCTG00005006288	ENSPCTG00005006257	NDST4 (ENSPCTG00005006211) #17	UGT8 (ENSPCTG00005006173) #18	ARSJ (ENSPCTG00005006151) #20	CAMK2D (ENSPCTG00005005855) #22	ANK2 (ENSPCTG00005003875) #23	ENSPCTG00005003723	LARP7 (ENSPCTG00005003701) #25	ZGRF1 (ENSPCTG00005003570) #26	NEUROG2 (ENSPCTG00005003546) #27	ALPK1 (ENSPCTG00005003520) #28	ENSPCTG00005003510 #29	AP1AR (ENSPCTG00005003475) #30	FAM241A (ENSPCTG00005003460) #31	PITX2 (ENSPCTG00005003429)	ENSPCTG00005003414	ENPEP (ENSPCTG00005003393) #34	ENSPCTG00005003378	ELOVL6 (ENSPCTG00005003362) #37	ENSPCTG00005003344
Blue whale	MODERN SPECIES	16	ENSBMSG00010022586	MYOZ2 (ENSBMSG00010022585)	SYNPO2 (ENSBMSG00010022583)	SEC24D (ENSBMSG00010022582)	METTL14 (ENSBMSG00010022581)	ENSBMSG00010022580	PRSS12 (ENSBMSG00010022579)	NDST3 (ENSBMSG00010022577) #13	ENSBMSG00010022576	TRAM1L1 (ENSBMSG00010022575) #15	ENSBMSG00010022574	NDST4 (ENSBMSG00010022573) #17	UGT8 (ENSBMSG00010022572) #18	ENSBMSG00010022571	ARSJ (ENSBMSG00010022570) #20	CAMK2D (ENSBMSG00010022569) #22	ENSBMSG00010022568	ANK2 (ENSBMSG00010015900) #23	ENSBMSG00010011560	LARP7 (ENSBMSG00010011549) #25	ZGRF1 (ENSBMSG00010011392) #26	NEUROG2 (ENSBMSG00010011337) #27	TIFA (ENSBMSG00010011281) #29	AP1AR (ENSBMSG00010011262) #30	FAM241A (ENSBMSG00010011240) #31	PITX2 (ENSBMSG00010011211)	ENPEP (ENSBMSG00010011169) #34	ENSBMSG00010011157	ENSBMSG00010011146	ELOVL6 (ENSBMSG00010011132) #37	EGF (ENSBMSG00010010764)
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Yarkand deer	MODERN SPECIES	8	MYOZ2 (ENSCHYG00000019531)	SYNPO2 (ENSCHYG00000019608)	SEC24D (ENSCHYG00000019930)	METTL14 (ENSCHYG00000020653)	ENSCHYG00000020777	PRSS12 (ENSCHYG00000020827)	NDST3 (ENSCHYG00000021158) #13	TRAM1L1 (ENSCHYG00000021312) #15	ENSCHYG00000021359	NDST4 (ENSCHYG00000021418) #17	UGT8 (ENSCHYG00000021551) #18	ENSCHYG00000021625	ENSCHYG00000021651	ARSJ (ENSCHYG00000021686) #20	ENSCHYG00000021709	CAMK2D (ENSCHYG00000021900) #22	ENSCHYG00000013660 #23	LARP7 (ENSCHYG00000016420) #25	ZGRF1 (ENSCHYG00000016563) #26	NEUROG2 (ENSCHYG00000016884) #27	ALPK1 (ENSCHYG00000016924) #28	TIFA (ENSCHYG00000017159) #29	AP1AR (ENSCHYG00000017199) #30	FAM241A (ENSCHYG00000017369) #31	ENSCHYG00000017401	ENSCHYG00000017419	PITX2 (ENSCHYG00000017532)	ENPEP (ENSCHYG00000017750) #34	ELOVL6 (ENSCHYG00000018333) #37	ENSCHYG00000018367	ENSCHYG00000018402
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627	ENSGT01100000263524.I
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000159769.b	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627
Bovinae	ANCESTRAL SPECIES	15	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000180978.b	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000159769.b	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627
Bos	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Bos_a	ANCESTRAL SPECIES	33	ENSGT00940000155475	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT01100000263506.a.e.a.a.b.b.c.b	ENSGT00940000180978.b	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00390000014814.b.kc.b.a	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627
Domestic yak	MODERN SPECIES	25	USP53 (ENSBGRG00000004871)	MYOZ2 (ENSBGRG00000004836)	SYNPO2 (ENSBGRG00000004790)	SEC24D (ENSBGRG00000004688)	METTL14 (ENSBGRG00000004579)	PRSS12 (ENSBGRG00000004493)	ENSBGRG00000004478	NDST3 (ENSBGRG00000004409) #13	ENSBGRG00000004394	ENSBGRG00000004380	ENSBGRG00000004298	NDST4 (ENSBGRG00000004218) #17	UGT8 (ENSBGRG00000004157) #18	ENSBGRG00000004116	ARSJ (ENSBGRG00000004095) #20	CAMK2D (ENSBGRG00000003179) #22	ENSBGRG00000003089	ENSBGRG00000002655 #23	LARP7 (ENSBGRG00000002553) #25	ZGRF1 (ENSBGRG00000002512) #26	ENSBGRG00000002492 #27	ALPK1 (ENSBGRG00000002371) #28	TIFA (ENSBGRG00000002353) #29	AP1AR (ENSBGRG00000002306) #30	FAM241A (ENSBGRG00000002294) #31	ENSBGRG00000002291	ENSBGRG00000002274	PITX2 (ENSBGRG00000002238)	ENPEP (ENSBGRG00000002076) #34	ENSBGRG00000002037	ENSBGRG00000002033
Wild yak	MODERN SPECIES	2939																CAMK2D (ENSBMUG00000009048) #22
American bison	MODERN SPECIES	3303											NDST4 (ENSBBBG00000012527) #17	UGT8 (ENSBBBG00000012504) #18	ENSBBBG00000012493	ENSBBBG00000012486	ARSJ (ENSBBBG00000012481) #20	CAMK2D (ENSBBBG00000012457) #22	ANK2 (ENSBBBG00000012193) #23	LARP7 (ENSBBBG00000011817) #25	ZGRF1 (ENSBBBG00000025465) #26	NEUROG2 (ENSBBBG00000008258) #27	ALPK1 (ENSBBBG00000006692) #28	TIFA (ENSBBBG00000008085) #29	AP1AR (ENSBBBG00000025159) #30	ENSBBBG00000008246 #31	ENSBBBG00000025125	PITX2 (ENSBBBG00000006652)	ENPEP (ENSBBBG00000025085) #34	ENSBBBG00000025037	ENSBBBG00000008069	ELOVL6 (ENSBBBG00000025019) #37	EGF (ENSBBBG00000025002)
Caprinae	ANCESTRAL SPECIES	13	ENSGT00800000124172	ENSGT00530000064570.m	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000164540	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00950000185425	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00390000015688.b	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b.o #37	ENSGT00940000156627	ENSGT01100000263524.I
Rambouillet Sheep	MODERN SPECIES	22	ENSOARG00020010708	PDE5A (ENSOARG00020010829)	FABP2 (ENSOARG00020011627)	C6H4orf3 (ENSOARG00020011681)	MYOZ2 (ENSOARG00020011801)	SYNPO2 (ENSOARG00020011882)	SEC24D (ENSOARG00020012239)	METTL14 (ENSOARG00020012676)	ENSOARG00020012744	NDST3 (ENSOARG00020013044) #13	ENSOARG00020013687	NDST4 (ENSOARG00020013751) #17	ENSOARG00020013962	UGT8 (ENSOARG00020013985) #18	ARSJ (ENSOARG00020014089) #20	CAMK2D (ENSOARG00020014242) #22	ANK2 (ENSOARG00020019914) #23	ENSOARG00020022694	ZGRF1 (ENSOARG00020022741) #26	NEUROG2 (ENSOARG00020022898) #27	ENSOARG00020022943	TIFA (ENSOARG00020022965) #29	ENSOARG00020022983 #30	FAM241A (ENSOARG00020023104) #31	PITX2 (ENSOARG00020023123)	ENPEP (ENSOARG00020023177) #34	ELOVL6 (ENSOARG00020023319) #37	RRH (ENSOARG00020023371)	GAR1 (ENSOARG00020023399)	PLA2G12A (ENSOARG00020023478)	MCUB (ENSOARG00020024210)
Siberian musk deer	MODERN SPECIES	1271	FABP2 (ENSMMSG00000017233)	ENSMMSG00000017213	USP53 (ENSMMSG00000017172)	MYOZ2 (ENSMMSG00000017140)	SYNPO2 (ENSMMSG00000017112)	SEC24D (ENSMMSG00000024289)	METTL14 (ENSMMSG00000024284)	PRSS12 (ENSMMSG00000024282)	NDST3 (ENSMMSG00000024279) #13	TRAM1L1 (ENSMMSG00000024274) #15	ENSMMSG00000024273	ENSMMSG00000024271	NDST4 (ENSMMSG00000024268) #17	UGT8 (ENSMMSG00000024267) #18	ARSJ (ENSMMSG00000024266) #20	CAMK2D (ENSMMSG00000024263) #22	ENSMMSG00000024258	ANK2 (ENSMMSG00000024111) #23	LARP7 (ENSMMSG00000024065) #25	ZGRF1 (ENSMMSG00000024057) #26	ENSMMSG00000024053	NEUROG2 (ENSMMSG00000024051) #27	ALPK1 (ENSMMSG00000024041) #28	ENSMMSG00000024037 #29	ENSMMSG00000024030 #30	FAM241A (ENSMMSG00000024017) #31	ENSMMSG00000024009	PITX2 (ENSMMSG00000023999)	ENPEP (ENSMMSG00000023990) #34	ELOVL6 (ENSMMSG00000023985) #37	ENSMMSG00000023982
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000163685	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000163685	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000163685	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Ursidae	ANCESTRAL SPECIES	17	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT01070000254361	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT01100000264156.b	ENSGT00940000159954 #20	ENSGT00940000159769.b	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335.d	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Giant Panda	MODERN SPECIES	2	CUNH4orf3 (ENSAMEG00000026955)	USP53 (ENSAMEG00000016922)	MYOZ2 (ENSAMEG00000016925)	SYNPO2 (ENSAMEG00000016930)	SEC24D (ENSAMEG00000011604)	METTL14 (ENSAMEG00000011578)	PRSS12 (ENSAMEG00000011572)	NDST3 (ENSAMEG00000011533) #13	TRAM1L1 (ENSAMEG00000028991) #15	ENSAMEG00000029330	ENSAMEG00000029857	NDST4 (ENSAMEG00000014571) #17	UGT8 (ENSAMEG00000014573) #18	ENSAMEG00000030424	ARSJ (ENSAMEG00000025956) #20	CAMK2D (ENSAMEG00000009200) #22	ANK2 (ENSAMEG00000009259) #23	LARP7 (ENSAMEG00000015642) #25	ZGRF1 (ENSAMEG00000015635) #26	ENSAMEG00000025601	NEUROG2 (ENSAMEG00000015618) #27	ALPK1 (ENSAMEG00000014797) #28	TIFA (ENSAMEG00000018870) #29	AP1AR (ENSAMEG00000014805) #30	FAM241A (ENSAMEG00000014823) #31	PITX2 (ENSAMEG00000014836)	ENPEP (ENSAMEG00000014850) #34	ELOVL6 (ENSAMEG00000014947) #37	ENSAMEG00000030246	EGF (ENSAMEG00000014957)	ENSAMEG00000004605
Mustelinae	ANCESTRAL SPECIES	50													ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
American mink	MODERN SPECIES	110											TRAM1L1 (ENSNVIG00000012850) #15	ENSNVIG00000012852	NDST4 (ENSNVIG00000012866) #17	CGT (ENSNVIG00000012891) #18	Q1HA39 (ENSNVIG00000012916) #20	CAMK2D (ENSNVIG00000012956) #22	ANK2 (ENSNVIG00000013596) #23	LARP7 (ENSNVIG00000014061) #25	ENSNVIG00000014102 #26	ENSNVIG00000014128	ENSNVIG00000014134	NEUROG2 (ENSNVIG00000014139) #27	ALPK1 (ENSNVIG00000014151) #28	TIFA (ENSNVIG00000014223) #29	AP1AR (ENSNVIG00000014230) #30	FAM241A (ENSNVIG00000014250) #31
Canidae	ANCESTRAL SPECIES	40	ENSGT00940000156337	ENSGT00940000169764	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000154451.k.b.b	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT01070000254361	ENSGT00390000018086.z.j.b.a.b.b	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00390000004322.a.b.j.b	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627
Canis_lupus	ANCESTRAL SPECIES	30	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000154451.k.b.b	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000172584.c.b.a.a	ENSGT01070000254361	ENSGT01090000260040.b.b.b.b.b.e	ENSGT00390000018086.z.j.b.a.b.b	ENSGT00940000157168 #17	ENSGT00950000183178.a.q.b.a.b.a.a	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00390000004322.a.b.j.b.a	ENSGT00940000162789	ENSGT00940000164617	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00950000183210.d.a.c.b.b.b.b
Dog	MODERN SPECIES	25	METTL14 (ENSCAFG00845029674)	ENSCAFG00845029655	PRSS12 (ENSCAFG00845029625)	NDST3 (ENSCAFG00845029512) #13	TRAM1L1 (ENSCAFG00845029459) #15	ENSCAFG00845029353	ENSCAFG00845029324	ENSCAFG00845029266	ENSCAFG00845029165	ENSCAFG00845029150	NDST4 (ENSCAFG00845029101) #17	ENSCAFG00845029073	UGT8 (ENSCAFG00845028928) #18	ENSCAFG00845028859	ARSJ (ENSCAFG00845028819) #20	CAMK2D (ENSCAFG00845028435) #22	ANK2 (ENSCAFG00845020611) #23	LARP7 (ENSCAFG00845017248) #25	ZGRF1 (ENSCAFG00845017018) #26	NEUROG2 (ENSCAFG00845016784) #27	ENSCAFG00845016756	ALPK1 (ENSCAFG00845016654) #28	TIFA (ENSCAFG00845016552) #29	AP1AR (ENSCAFG00845016400) #30	FAM241A (ENSCAFG00845016273) #31	ENSCAFG00845016089	PITX2 (ENSCAFG00845016014)	ENSCAFG00845015951	ENPEP (ENSCAFG00845015843) #34	ENSCAFG00845015801	ELOVL6 (ENSCAFG00845030224) #37
Red fox	MODERN SPECIES	98	SYNPO2 (ENSVVUG00000008167)	SEC24D (ENSVVUG00000008158)	METTL14 (ENSVVUG00000008131)	ENSVVUG00000008123	PRSS12 (ENSVVUG00000008117)	NDST3 (ENSVVUG00000008085) #13	TRAM1L1 (ENSVVUG00000008075) #15	ENSVVUG00000008040	ENSVVUG00000008039	ENSVVUG00000008001	ENSVVUG00000007997	ENSVVUG00000007981	NDST4 (ENSVVUG00000007972) #17	UGT8 (ENSVVUG00000007954) #18	ARSJ (ENSVVUG00000007950) #20	CAMK2D (ENSVVUG00000007922) #22	ENSVVUG00000005739 #23	ENSVVUG00000002513 #23	LARP7 (ENSVVUG00000002274) #25	ZGRF1 (ENSVVUG00000002203) #26	ENSVVUG00000002181 #27	ENSVVUG00000002176	NDUFA1 (ENSVVUG00000002163)	ALPK1 (ENSVVUG00000002069) #28	TIFA (ENSVVUG00000002050) #29	AP1AR (ENSVVUG00000002032) #30	ENSVVUG00000002024 #31	ENSVVUG00000001983	PITX2 (ENSVVUG00000001959)	ENSVVUG00000001947	ENPEP (ENSVVUG00000001907) #34
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT01100000265636	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT01100000265636	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627
leopard	MODERN SPECIES	3	C4orf3 (ENSPPRG00000002293)	USP53 (ENSPPRG00000002944)	MYOZ2 (ENSPPRG00000003221)	ENSPPRG00000009110	SYNPO2 (ENSPPRG00000010649)	SEC24D (ENSPPRG00000013417)	METTL14 (ENSPPRG00000013792)	PRSS12 (ENSPPRG00000014259)	NDST3 (ENSPPRG00000014924) #13	TRAM1L1 (ENSPPRG00000020668) #15	NDST4 (ENSPPRG00000020403) #17	UGT8 (ENSPPRG00000022073) #18	ENSPPRG00000023700	ARSJ (ENSPPRG00000023631) #20	ENSPPRG00000023296	CAMK2D (ENSPPRG00000008037) #22	ANK2 (ENSPPRG00000024801) #23	LARP7 (ENSPPRG00000023256) #25	ENSPPRG00000022757 #26	ENSPPRG00000000052	NEUROG2 (ENSPPRG00000021914) #27	ALPK1 (ENSPPRG00000001947) #28	TIFA (ENSPPRG00000022174) #29	AP1AR (ENSPPRG00000002972) #30	ENSPPRG00000006854	ENSPPRG00000009282	FAM241A (ENSPPRG00000009553) #31	ENSPPRG00000009727	PITX2 (ENSPPRG00000010348)	ENPEP (ENSPPRG00000010666) #34	ENSPPRG00000011064
lion	MODERN SPECIES	4	PDE5A (ENSPLOG00000014134)	FABP2 (ENSPLOG00000014469)	C4orf3 (ENSPLOG00000014512)	USP53 (ENSPLOG00000014535)	MYOZ2 (ENSPLOG00000014603)	SYNPO2 (ENSPLOG00000014681)	SEC24D (ENSPLOG00000014842)	METTL14 (ENSPLOG00000014973)	PRSS12 (ENSPLOG00000015046)	NDST3 (ENSPLOG00000015257) #13	TRAM1L1 (ENSPLOG00000015291) #15	ENSPLOG00000015306	NDST4 (ENSPLOG00000015328) #17	UGT8 (ENSPLOG00000015387) #18	ARSJ (ENSPLOG00000015439) #20	CAMK2D (ENSPLOG00000015618) #22	ANK2 (ENSPLOG00000021446) #23	ENSPLOG00000022734	LARP7 (ENSPLOG00000022736) #25	ZGRF1 (ENSPLOG00000022739) #26	NEUROG2 (ENSPLOG00000022741) #27	ALPK1 (ENSPLOG00000022742) #28	TIFA (ENSPLOG00000022743) #29	AP1AR (ENSPLOG00000022744) #30	ENSPLOG00000004715	FAM241A (ENSPLOG00000004730) #31	ENSPLOG00000004736	PITX2 (ENSPLOG00000004787)	ENPEP (ENSPLOG00000004896) #34	ELOVL6 (ENSPLOG00000004917) #37	EGF (ENSPLOG00000005057)
Tiger	MODERN SPECIES	276															ARSJ (ENSPTIG00000011776) #20	CAMK2D (ENSPTIG00000011862) #22	ANK2 (ENSPTIG00000012160) #23
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I
Chiroptera	ANCESTRAL SPECIES	36	ENSGT00940000153395.a	ENSGT00940000155475.f	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337.h	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31
Microchiroptera	ANCESTRAL SPECIES	38	ENSGT00940000153395.a	ENSGT00940000155475.f	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337.h	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31
Greater horseshoe bat	MODERN SPECIES	9	ENSRFEG00010007352	PDE5A (ENSRFEG00010007136)	FABP2 (ENSRFEG00010007055)	ENSRFEG00010007022	USP53 (ENSRFEG00010006951)	MYOZ2 (ENSRFEG00010019470)	SYNPO2 (ENSRFEG00010019404)	SEC24D (ENSRFEG00010019312)	METTL14 (ENSRFEG00010019257)	PRSS12 (ENSRFEG00010019073)	NDST3 (ENSRFEG00010018567) #13	TRAM1L1 (ENSRFEG00010018522) #15	NDST4 (ENSRFEG00010018483) #17	UGT8 (ENSRFEG00010018451) #18	ARSJ (ENSRFEG00010018415) #20	CAMK2D (ENSRFEG00010018229) #22	ANK2 (ENSRFEG00010017829) #23	LARP7 (ENSRFEG00010017573) #25	ENSRFEG00010017544 #26	ENSRFEG00010017511	NEUROG2 (ENSRFEG00010017497) #27	ALPK1 (ENSRFEG00010017464) #28	TIFA (ENSRFEG00010017447) #29	AP1AR (ENSRFEG00010017404) #30	ENSRFEG00010017375 #31
Equus	ANCESTRAL SPECIES	24	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000153669.b.n	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT01000000219065	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Donkey	MODERN SPECIES	22	PDE5A (ENSEASG00005009800)	FABP2 (ENSEASG00005009711)	C4orf3 (ENSEASG00005009709)	USP53 (ENSEASG00005009707)	MYOZ2 (ENSEASG00005009706)	SYNPO2 (ENSEASG00005009703)	SEC24D (ENSEASG00005009700)	METTL14 (ENSEASG00005009697)	PRSS12 (ENSEASG00005009686)	NDST3 (ENSEASG00005009682) #13	ENSEASG00005009678	TRAM1L1 (ENSEASG00005030554) #15	NDST4 (ENSEASG00005009672) #17	UGT8 (ENSEASG00005009669) #18	ARSJ (ENSEASG00005009667) #20	CAMK2D (ENSEASG00005009042) #22	ANK2 (ENSEASG00005005871) #23	LARP7 (ENSEASG00005005592) #25	ZGRF1 (ENSEASG00005005589) #26	ALPK1 (ENSEASG00005005579) #28	TIFA (ENSEASG00005023815) #29	AP1AR (ENSEASG00005032830) #30	ENSEASG00005025146 #31	PITX2 (ENSEASG00005005562)	ENPEP (ENSEASG00005004746) #34	ENSEASG00005004686	ELOVL6 (ENSEASG00005004683) #37	EGF (ENSEASG00005004674)	ENSEASG00005004681	LRIT3 (ENSEASG00005004671)	RRH (ENSEASG00005004665)
Atlantogenata	ANCESTRAL SPECIES	57		ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223.b
Afrotheria	ANCESTRAL SPECIES	67		ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00930000151042	ENSGT00390000008798.c
Afrotheria_a	ANCESTRAL SPECIES	62		ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00510000046470.a.a.a.d.b #15	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162642 #26	ENSGT00940000162335	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00930000151042	ENSGT00390000008798.c
Elephant	MODERN SPECIES	95	PDE5A (ENSLAFG00000022606)	FABP2 (ENSLAFG00000026610)	C4orf3 (ENSLAFG00000005175)	USP53 (ENSLAFG00000015483)	MYOZ2 (ENSLAFG00000015471)	SYNPO2 (ENSLAFG00000022538)	SEC24D (ENSLAFG00000001863)	METTL14 (ENSLAFG00000001857)	PRSS12 (ENSLAFG00000007466)	NDST3 (ENSLAFG00000021526) #13	TRAM1L1 (ENSLAFG00000029932) #15	NDST4 (ENSLAFG00000016988) #17	UGT8 (ENSLAFG00000000017) #18	ENSLAFG00000028997	ARSJ (ENSLAFG00000010599) #20	CAMK2D (ENSLAFG00000004718) #22	ENSLAFG00000030524 #23	ENSLAFG00000028722	LARP7 (ENSLAFG00000015769) #25	ENSLAFG00000015144 #26	ENSLAFG00000015140	ALPK1 (ENSLAFG00000015129) #28	TIFA (ENSLAFG00000009392) #29	AP1AR (ENSLAFG00000009389) #30	FAM241A (ENSLAFG00000009717) #31	ENSLAFG00000021420 #33	ENPEP (ENSLAFG00000008127) #34	ELOVL6 (ENSLAFG00000021532) #37	EGF (ENSLAFG00000013803)	LRIT3 (ENSLAFG00000009373)	RRH (ENSLAFG00000009369)
Sauria	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Archelosauria	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Cryptodira	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000155475	ENSGT00800000124172	ENSGT01030000235417	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00960000191080	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665.b #13	ENSGT00940000153664.A.a	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196	ENSGT00940000162645	ENSGT00940000162708.b.b	ENSGT00940000162708.b.a	ENSGT00940000164026	ENSGT00530000063169.a	ENSGT00390000011412	ENSGT00730000111645	ENSGT00910000144274	ENSGT00390000013159	ENSGT00940000157887
Emydidae	ANCESTRAL SPECIES	1	ENSGT00950000182878.b.b	ENSGT00940000155475	ENSGT00800000124172	ENSGT01030000235417	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665.b #13	ENSGT00940000153664.A.a	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000155150.a #22
painted turtle	MODERN SPECIES	723	RPL7L1 (ENSCPBG00000024742)	PDE5A (ENSCPBG00000024747)	FABP2 (ENSCPBG00000024751)	ENSCPBG00000024754	USP53 (ENSCPBG00000024758)	MYOZ2 (ENSCPBG00000024760)	SYNPO2 (ENSCPBG00000024764)	SEC24D (ENSCPBG00000024767)	METTL14 (ENSCPBG00000024769)	PRSS12 (ENSCPBG00000024770)	NDST3 (ENSCPBG00000024773) #13	ENSCPBG00000024774	NDST4 (ENSCPBG00000024777) #17	UGT8 (ENSCPBG00000024780) #18	ARSJ (ENSCPBG00000024782) #20	CAMK2D (ENSCPBG00000024786) #22
Archosauria	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Aves	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Neognathae	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Anatidae	ANCESTRAL SPECIES	46		ENSGT00940000156633	ENSGT00940000155680.d	ENSGT00940000158223	ENSGT00940000160897	ENSGT01030000234574.B.c.a.g	ENSGT01030000234574.B.c.a.h	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003	ENSGT00940000158131	ENSGT00940000160665 #13	ENSGT00940000157168 #17	ENSGT00940000156545 #18	ENSGT00940000159954 #20	ENSGT00940000159769.b	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000162789	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223
Pink-footed goose	MODERN SPECIES	123													NDST4 (ENSABRG00000014974) #17	UGT8 (ENSABRG00000014989) #18	ARSJ (ENSABRG00000015001) #20	CAMK2D (ENSABRG00000015104) #22	ANK2 (ENSABRG00000016532) #23	LARP7 (ENSABRG00000017894) #25	ENSABRG00000017903	ALPK1 (ENSABRG00000017929) #28	TIFA (ENSABRG00000017944) #29	AP1AR (ENSABRG00000017957) #30	FAM241A (ENSABRG00000017961) #31	PITX2 (ENSABRG00000017989)	ENPEP (ENSABRG00000017997) #34	ELOVL6 (ENSABRG00000018014) #37	EGF (ENSABRG00000018062)
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Episquamata	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Toxicofera	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00390000018433	ENSGT00940000155694	ENSGT00950000182936.a.a.b	ENSGT00390000016644	ENSGT00940000154986	ENSGT00920000150804	ENSGT00950000183040.A.b	ENSGT00940000155128.a.b	ENSGT00940000155905.a	ENSGT00490000043413	ENSGT00530000063614.a.b	ENSGT00940000156545 #18	ENSGT00940000159954.i #20	ENSGT00940000159769.b	ENSGT00940000159954.j #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946.c #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000154778	ENSGT01050000244827.C.c.a.a	ENSGT00390000018433	ENSGT00940000155694	ENSGT00950000182936.a.a.b	ENSGT00390000016644	ENSGT00940000154986	ENSGT00920000150804	ENSGT00950000183040.A.b	ENSGT00940000155128.a.b	ENSGT00940000155905.a	ENSGT00490000043413	ENSGT00530000063614.a.b	ENSGT00940000156545 #18	ENSGT00940000159954.j #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162335	ENSGT00940000162895 #27	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00390000002219 #30	ENSGT00940000154340.A #31	ENSGT00940000156946.c #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627	ENSGT01100000263524.I	ENSGT00730000111223	ENSGT00930000151042
Mainland tiger snake	MODERN SPECIES	24	LRBA (ENSNSUG00000004779)	RPS3A (ENSNSUG00000004762)	SH3D19 (ENSNSUG00000004744)	FHIP1A (ENSNSUG00000004742)	GATB (ENSNSUG00000004740)	FBXW7 (ENSNSUG00000004722)	ENSNSUG00000004720	ENSNSUG00000004705	ARFIP1 (ENSNSUG00000004697)	FHDC1 (ENSNSUG00000004690)	TRIM2 (ENSNSUG00000004687)	MND1 (ENSNSUG00000004678)	ENSNSUG00000004676	UGT8 (ENSNSUG00000004673) #18	ARSJ (ENSNSUG00000004671) #20	CAMK2D (ENSNSUG00000004208) #22	ENSNSUG00000004195	ENSNSUG00000004189 #23	ENSNSUG00000004187 #23	LARP7 (ENSNSUG00000003937) #25	ENSNSUG00000003936	NEUROG2 (ENSNSUG00000003935) #27	ALPK1 (ENSNSUG00000003921) #28	TIFA (ENSNSUG00000003918) #29	AP1AR (ENSNSUG00000003913) #30	FAM241A (ENSNSUG00000003912) #31	ENSNSUG00000003911 #33	ENPEP (ENSNSUG00000003744) #34	ELOVL6 (ENSNSUG00000003740) #37	ENSNSUG00000003739	LRIT3 (ENSNSUG00000003735)
Actinopterygii	ANCESTRAL SPECIES	15	ENSGT00940000157225	ENSGT00940000157828	ENSGT00940000160623	ENSGT00940000156545 #18	ENSGT00940000157168 #17	ENSGT00940000158131	ENSGT00550000075003	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337	ENSGT00990000210463	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000154949.b #25	ENSGT00940000162335	ENSGT01030000234583.a.b.b.f	ENSGT00390000017284.b	ENSGT00940000162170	ENSGT00940000159753 #28	ENSGT00940000154589.b #29	ENSGT00940000154340.A #31	ENSGT00940000154518.a #33	ENSGT00940000156946 #34	ENSGT01050000244965.b #37	ENSGT00940000158366	ENSGT00940000156627.a	ENSGT01100000263524.I
Neopterygii	ANCESTRAL SPECIES	345																ENSGT00940000155150.a #22	ENSGT00940000155279.C #23	ENSGT00940000153763.b	ENSGT00390000011576.a	ENSGT00390000004594	ENSGT00390000001754	ENSGT00390000001301	ENSGT00530000063074.a	ENSGT00530000063169.b.a
Osteoglossocephalai	ANCESTRAL SPECIES	806																ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23
Clupeocephala	ANCESTRAL SPECIES	235									ENSGT00940000159753 #28	ENSGT00940000164430.a.b.a	ENSGT00510000049875	ENSGT00390000006979.a	ENSGT00390000006255	ENSGT00950000183148.b.a.g.a	ENSGT00940000171321	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT01100000263495.E	ENSGT00940000156819.b	ENSGT00940000156996.f.a.b	ENSGT00390000004124.j	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000155078.a.a	ENSGT00940000161027.b	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b	ENSGT00940000159589	ENSGT00390000005147	ENSGT00650000094910
Euteleosteomorpha	ANCESTRAL SPECIES	78	ENSGT00390000018549	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT00950000183712	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT01100000263495.E	ENSGT00940000156819.b	ENSGT00940000156996.f.a.b	ENSGT00390000004124.j	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000155078.a.a	ENSGT00940000165255.A	ENSGT00940000161027.b	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b	ENSGT00940000159589	ENSGT00390000005147
Protacanthopterygii	ANCESTRAL SPECIES	57	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a.a	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a.b	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000159769.a.a	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT01100000263495.E	ENSGT00940000156819.b	ENSGT00940000156996.f.a.b	ENSGT00390000004124.j	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000155078.a.a	ENSGT00940000165255.A	ENSGT00940000160057	ENSGT00940000161027.b	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b	ENSGT00940000159589
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00940000155150.a.a #22
Huchen	MODERN SPECIES	6055													ENSHHUG00000009725	ENSHHUG00000009719	ENSHHUG00000009716	ENSHHUG00000009710 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000155150.a.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000155150.a.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00940000155150.a.a #22
Coho salmon	MODERN SPECIES	36	ENSOKIG00005043177	ENSOKIG00005043298	ENSOKIG00005043315	SCOC (ENSOKIG00005043447)	ENSOKIG00005043498	ENSOKIG00005043519	RAB33B (ENSOKIG00005043544)	elf2b (ENSOKIG00005043556)	NOCT (ENSOKIG00005043631)	ENSOKIG00005043717	NOCT (ENSOKIG00005043798)	ENSOKIG00005043845	TYRP1 (ENSOKIG00005043867)	ENSOKIG00005043970	exosc9 (ENSOKIG00005043978)	ENSOKIG00005043992 #22	ENSOKIG00005044009	ENSOKIG00005044034	ENSOKIG00005044058	ENSOKIG00005024252 #23	crmp1 (ENSOKIG00005024805)	WFS1 (ENSOKIG00005024832)	ppp2r2ca (ENSOKIG00005024979)	PI4K2B (ENSOKIG00005024998)	CPZ (ENSOKIG00005025279)	ENSOKIG00005025350	hmx4 (ENSOKIG00005025373)	hmx1 (ENSOKIG00005025385)	ENSOKIG00005025396	ENSOKIG00005025415	ENSOKIG00005025437
Salmoninae	ANCESTRAL SPECIES	336	ENSGT00390000015965	ENSGT01100000263563.c.b.c	ENSGT00390000005197.a.cb.e.a	ENSGT00390000018549.k	ENSGT00940000157250.e	ENSGT01100000263482.F	ENSGT00940000157318.b	ENSGT00390000005589.a.a.x	ENSGT01030000234563.b.a.a.k	ENSGT00950000183067.a.a.g	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00390000012556.c	ENSGT00940000155475.h.i	ENSGT00940000153395.a.i	ENSGT00940000159954.a #20	ENSGT00940000155150.a.b #22	ENSGT00940000155279.C.a.a.m.a.a.a #23	ENSGT01100000263495.E.m.b.b	ENSGT00940000162989.f.b	ENSGT00940000156819.b.g	ENSGT00940000156996.f.a.b.b	ENSGT00390000004124.j.j	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00940000155078.a.a.a	ENSGT00940000161027.b.f.a	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b.j	ENSGT00940000159589.e
Huchen	DUPLICATION
Huchen	MODERN SPECIES	67									ENSHHUG00000019864	ENSHHUG00000019866	ABLIM2 (ENSHHUG00000019886)	zcchc4 (ENSHHUG00000019901)	pde5ab (ENSHHUG00000019939)	mad2l1 (ENSHHUG00000020429)	ARSJ (ENSHHUG00000020454) #20	camk2d1 (ENSHHUG00000020480) #22	ENSHHUG00000022463 #23	znf16l (ENSHHUG00000023156)	ENSHHUG00000023164	ENSHHUG00000023179	cd248a (ENSHHUG00000023183)	RCE1 (ENSHHUG00000023189)	PELI3 (ENSHHUG00000023209)	ENSHHUG00000023214	ENSHHUG00000023295	ENSHHUG00000023303	taf6l (ENSHHUG00000023337)	mta2 (ENSHHUG00000023450)	EML3 (ENSHHUG00000024124)	ecsit (ENSHHUG00000025075)	ZFTA (ENSHHUG00000025078)
Huchen	MODERN SPECIES	3432																ENSHHUG00000004635 #22	ENSHHUG00000005557 #23
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00390000005197.a.cb.e.a	ENSGT00390000018549.k	ENSGT00940000157250.e	ENSGT00990000210738.b	ENSGT00940000157318.b	ENSGT00390000005589.a.a.x	ENSGT01030000234563.b.a.a.k	ENSGT00950000183067.a.a.g	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00390000012556.c	ENSGT00940000155475.h.i	ENSGT00940000153395.a.i	ENSGT00940000159954.a #20	ENSGT00940000159769.a.a.w.b	ENSGT00940000155279.C.a.a.m.a.b #23	ENSGT00940000155150.a.b #22	ENSGT00940000155279.C.a.a.m.a.a.a #23	ENSGT01100000263495.E.m.b.b	ENSGT00940000162989.f.b	ENSGT00940000156819.b.g	ENSGT00940000156996.f.a.b.b	ENSGT00390000004124.j.j	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00940000155078.a.a.a	ENSGT00940000161027.b.f.a	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b.j	ENSGT00940000159589.e	ENSGT00390000005147.d
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT01100000263563.c.b.c	ENSGT00390000005197.a.cb.e.a	ENSGT00390000018549.k	ENSGT00940000157250.e	ENSGT00990000210738.b	ENSGT00940000157318.b	ENSGT00390000005589.a.a.x	ENSGT01030000234563.b.a.a.k	ENSGT00950000183067.a.a.g	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00390000012556.c	ENSGT00940000155475.h.i	ENSGT00940000153395.a.i	ENSGT00940000159954.a #20	ENSGT00940000159769.a.a.w.b	ENSGT00940000155150.a.b #22	ENSGT00940000155279.C.a.a.m.a.a.a #23	ENSGT01100000263495.E.m.b.b	ENSGT00940000162989.f.b	ENSGT00940000156819.b.g	ENSGT00940000156996.f.a.b.b	ENSGT00390000004124.j.j	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00940000155078.a.a.a	ENSGT00940000161027.b.f.a	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT01030000234573.B.c.b.b.i	ENSGT00940000159589.f	ENSGT00390000005147.c	ENSGT00600000084617.c
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT01100000263563.c.b.c	ENSGT00390000005197.a.cb.e.a	ENSGT00390000018549.k	ENSGT00940000157250.e	ENSGT00990000210738.b	ENSGT00940000157318.b	ENSGT00390000005589.a.a.x	ENSGT01030000234563.b.a.a.k	ENSGT00950000183067.a.a.g	ENSGT00950000182850.a.b.a.a.a.a	ENSGT00390000012556.c	ENSGT00940000155475.h.i	ENSGT00940000153395.a.i	ENSGT00940000159954.a #20	ENSGT00940000159769.a.a.w.b	ENSGT00940000155150.a.b #22	ENSGT00940000155279.C.a.a.m.a.a.a #23	ENSGT01100000263495.E.m.b.b	ENSGT00940000162989.f.b	ENSGT00940000156819.b.g	ENSGT00940000156996.f.a.b.b	ENSGT00390000004124.j.j	ENSGT00950000183050.b.b.b.a.b.b.e	ENSGT00940000155078.a.a.a	ENSGT00940000161027.b.f.a	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT01030000234573.B.c.b.b.i	ENSGT00940000159589.f	ENSGT00390000005147.c	ENSGT00600000084617.c
Chinook salmon	MODERN SPECIES	1	tbc1d19 (ENSOTSG00005001461)	CCKAR (ENSOTSG00005001452)	rbpjb (ENSOTSG00005001100)	kiaa0232 (ENSOTSG00005001061)	ENSOTSG00005000732	TBC1D14 (ENSOTSG00005033971)	ENSOTSG00005033959	tada2b (ENSOTSG00005033957)	grpel1 (ENSOTSG00005033954)	SORCS2 (ENSOTSG00005033948)	AFAP1 (ENSOTSG00005033946)	ABLIM2 (ENSOTSG00005033937)	zcchc4 (ENSOTSG00005033936)	pde5ab (ENSOTSG00005032979)	mad2l1 (ENSOTSG00005032959)	camk2d1 (ENSOTSG00005032430) #22	ANK2 (ENSOTSG00005017559) #23	znf16l (ENSOTSG00005017512)	ENSOTSG00005017510	ENSOTSG00005017508	cd248a (ENSOTSG00005017507)	RCE1 (ENSOTSG00005017504)	PELI3 (ENSOTSG00005017502)	ENSOTSG00005017471	ENSOTSG00005017440	taf6l (ENSOTSG00005017433)	mta2 (ENSOTSG00005017375)	EML3 (ENSOTSG00005008826)	ecsit (ENSOTSG00005008791)	ZFTA (ENSOTSG00005008789)	ENSOTSG00005008772
Acanthomorphata	ANCESTRAL SPECIES	100	ENSGT00390000018549	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT00950000183712	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000155279.C.a.b #23
Cod	MODERN SPECIES	8	ENSGMOG00000030988	ENSGMOG00000031042	ENSGMOG00000013350	ENSGMOG00000025797	ENSGMOG00000018828	ENSGMOG00000036646	ENSGMOG00000034090	ENSGMOG00000023291	ENSGMOG00000010496	ENSGMOG00000023726	ENSGMOG00000010499	ENSGMOG00000028891	ENSGMOG00000036988	ENSGMOG00000001905	ENSGMOG00000030901	ENSGMOG00000032623 #22	ENSGMOG00000031711 #23
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00390000018549	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT00950000183712	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00390000000527	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000018549	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT00950000183712	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000159636	ENSGT00940000154889	ENSGT00940000167725.b	ENSGT00940000167725.a	ENSGT00940000165569	ENSGT00940000158694	ENSGT00910000148102	ENSGT00940000158826	ENSGT00940000165381	ENSGT00940000160246.c.a	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000155279.C.a.b #23	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00400000023727.a.a	ENSGT00400000023727.a.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000174504.A	ENSGT01030000234978	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000180421	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00940000174504.A	ENSGT01030000234978	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000180421	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01040000242820	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000180421	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Carangaria_A	ANCESTRAL SPECIES	41							ENSGT00940000174504.A	ENSGT01030000234978	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000155306.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b
Seriola	ANCESTRAL SPECIES	64	ENSGT00950000183148.b.a.g.a	ENSGT00940000167160	ENSGT00510000047760	ENSGT00390000013368	ENSGT00600000085600	ENSGT00940000169954	ENSGT00940000158194	ENSGT00950000183067.a.a	ENSGT00940000159842.pc.a.a.b.a.b	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903
Yellowtail amberjack	MODERN SPECIES	3056	rbm4.1 (ENSSLDG00000013147)	rbm4.2 (ENSSLDG00000013157)	map4k2 (ENSSLDG00000013179)	men1 (ENSSLDG00000013252)	rtn3 (ENSSLDG00000013371)	ENSSLDG00000013408	ecsit (ENSSLDG00000013450)	AFAP1 (ENSSLDG00000013501)	ENSSLDG00000013572	ABLIM2 (ENSSLDG00000013587)	zcchc4 (ENSSLDG00000013617)	ENSSLDG00000013657	pde5ab (ENSSLDG00000013675)	mad2l1 (ENSSLDG00000013709)	ARSJ (ENSSLDG00000013725) #20	camk2d1 (ENSSLDG00000013740) #22	ANK2 (ENSSLDG00000013812) #23	ACO1 (ENSSLDG00000013952)	PAQR9 (ENSSLDG00000013992)	ENSSLDG00000013997	frem1a (ENSSLDG00000014018)	ENSSLDG00000014071	ENSSLDG00000014092	RAP1GDS1 (ENSSLDG00000014143)	slc1a1 (ENSSLDG00000014207)	ENSSLDG00000014251	trmt10a (ENSSLDG00000014264)	ENSSLDG00000014288	hacd4 (ENSSLDG00000014299)	ENSSLDG00000014324	mllt3 (ENSSLDG00000014370)
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Tongue sole	MODERN SPECIES		ENSCSEG00000004575	smim20 (ENSCSEG00000004579)	RBPJ (ENSCSEG00000004581)	CCKAR (ENSCSEG00000004584)	tbc1d19 (ENSCSEG00000004592)	STIM2 (ENSCSEG00000004617)	AFAP1 (ENSCSEG00000004634)	ABLIM2 (ENSCSEG00000004654)	zcchc4 (ENSCSEG00000004671)	ENSCSEG00000004675	ENSCSEG00000004679	pde5ab (ENSCSEG00000004689)	mad2l1 (ENSCSEG00000004726)	ARSJ (ENSCSEG00000004731) #20	rpl17 (ENSCSEG00000004760)	camk2d1 (ENSCSEG00000004948) #22	cyp26b1 (ENSCSEG00000004973)	dysf (ENSCSEG00000004989)	ENSCSEG00000005015	ENSCSEG00000005021	pip4p1b (ENSCSEG00000005042)	ENSCSEG00000005048	zgc:77880 (ENSCSEG00000005054)	stk26 (ENSCSEG00000005056)	ENSCSEG00000005073	dachb (ENSCSEG00000005103)	cnpy3 (ENSCSEG00000005112)	trpc5a (ENSCSEG00000005117)	ENSCSEG00000005129	ENSCSEG00000005132	ENSCSEG00000005146
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT01030000234978	ENSGT00940000163911.a.a.b.a.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Anabantoidei	ANCESTRAL SPECIES	22	ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT01030000234978	ENSGT00940000163911.a.a.b.a.a.a.b	ENSGT00940000177569.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000018539	dock11 (ENSBSLG00000015449)	haus4 (ENSBSLG00000014997)	fxr2 (ENSBSLG00000012107)	rbm4.3 (ENSBSLG00000011869)	ENSBSLG00000011858 #29	rbm4.3 (ENSBSLG00000011840)	ENSBSLG00000011809	ENSBSLG00000011782	ENSBSLG00000011711	ENSBSLG00000011643	ENSBSLG00000011595	pde5ab (ENSBSLG00000010390)	mad2l1 (ENSBSLG00000010365)	ARSJ (ENSBSLG00000010364) #20	camk2d1 (ENSBSLG00000008861) #22	ACO1 (ENSBSLG00000008395)	PAQR9 (ENSBSLG00000008360)	ENSBSLG00000008339	frem1a (ENSBSLG00000008195)	ENSBSLG00000008191	tspan5a (ENSBSLG00000008154)	RAP1GDS1 (ENSBSLG00000008075)	slc1a1 (ENSBSLG00000008046)	spata6l (ENSBSLG00000008029)	trmt10a (ENSBSLG00000008016)	ENSBSLG00000008011	ENSBSLG00000007993	ENSBSLG00000007987	hacd4 (ENSBSLG00000007976)	ENSBSLG00000007889
Climbing perch	MODERN SPECIES	9	ENSATEG00000020313	ccdc96 (ENSATEG00000020333)	tada2b (ENSATEG00000028980)	grpel1 (ENSATEG00000029995)	SORCS2 (ENSATEG00000020390)	ENSATEG00000020461	ENSATEG00000020507	ENSATEG00000020524	AFAP1 (ENSATEG00000020578)	ENSATEG00000020630	ENSATEG00000020701	ENSATEG00000020711	pde5ab (ENSATEG00000000026)	mad2l1 (ENSATEG00000025736)	ARSJ (ENSATEG00000000161) #20	camk2d1 (ENSATEG00000000178) #22	ANK2 (ENSATEG00000028978) #23	ENSATEG00000000560	ENSATEG00000000649	ENSATEG00000000657	ENSATEG00000000719	frem1a (ENSATEG00000000746)	ENSATEG00000029290	tspan5a (ENSATEG00000000935)	ENSATEG00000000970	slc1a1 (ENSATEG00000001042)	spata6l (ENSATEG00000028755)	ENSATEG00000001123	ENSATEG00000001157	ENSATEG00000025549	hacd4 (ENSATEG00000001186)
Eupercaria	ANCESTRAL SPECIES	19	ENSGT01100000263983	ENSGT00390000018549	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Tetraodon	MODERN SPECIES	26	daxx (ENSTNIG00000005315)	ENSTNIG00000005314	ENSTNIG00000005313	ENSTNIG00000003379	wdr3 (ENSTNIG00000005299)	gdap2 (ENSTNIG00000005298)	ENSTNIG00000005297	ENSTNIG00000005296	ENSTNIG00000000463	ENSTNIG00000005292	ENSTNIG00000005291	ENSTNIG00000005290	frem1a (ENSTNIG00000005289)	PAQR9 (ENSTNIG00000001564)	ACO1 (ENSTNIG00000005288)	ENSTNIG00000005287 #22	ENSTNIG00000005286 #23	arfrp1 (ENSTNIG00000005278)	CA10 (ENSTNIG00000005272)	ENSTNIG00000005269	ENSTNIG00000005268	ENSTNIG00000019484	ENSTNIG00000005267	tube1 (ENSTNIG00000005266)	DNAL1 (ENSTNIG00000005265)	ENSTNIG00000005264	dag1 (ENSTNIG00000005263)	nicn1 (ENSTNIG00000000874)	oser1 (ENSTNIG00000005262)	manf (ENSTNIG00000005261)	rbm15b (ENSTNIG00000002438)
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT01100000263983	ENSGT00390000018549	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00390000018549	ENSGT00940000157250	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000159769.a.a	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT00940000171869.C	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000159769.a.a	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00940000172047	ENSGT00530000062962.b.b	ENSGT00390000004438
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT01100000266235	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000159769.a.a	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b
European seabass	MODERN SPECIES	16	ENSDLAG00005022497	ENSDLAG00005022490	ENSDLAG00005026719	ccdc96 (ENSDLAG00005022484)	tada2b (ENSDLAG00005034948)	grpel1 (ENSDLAG00005028693)	SORCS2 (ENSDLAG00005020908)	AFAP1 (ENSDLAG00005020819)	ABLIM2 (ENSDLAG00005020689)	ENSDLAG00005020669	zcchc4 (ENSDLAG00005020651)	pde5ab (ENSDLAG00005020232)	mad2l1 (ENSDLAG00005028659)	ARSJ (ENSDLAG00005020204) #20	ENSDLAG00005020179	camk2d1 (ENSDLAG00005020120) #22	ENSDLAG00005007733 #23	ENSDLAG00005006897	ENSDLAG00005031223	frem1a (ENSDLAG00005006751)	ENSDLAG00005006736	tspan5a (ENSDLAG00005006709)	ENSDLAG00005006523	slc1a1 (ENSDLAG00005033872)	spata6l (ENSDLAG00005029816)	ENSDLAG00005005736	ENSDLAG00005005734	hacd4 (ENSDLAG00005030706)	ENSDLAG00005020745	mllt3 (ENSDLAG00005020690)	ENSDLAG00005020632
Perciformes	ANCESTRAL SPECIES	19					ENSGT01030000234563.b.a.a.j	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00390000000527	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Cottioidei	ANCESTRAL SPECIES	20					ENSGT01030000234563.b.a.a.j	ENSGT00390000005589.a.a	ENSGT00940000157318	ENSGT00940000154521.A	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00900000140979.a.a
Stickleback	MODERN SPECIES	42													pde5ab (ENSGACG00000001592)	mad2l1 (ENSGACG00000001594)	ARSJ (ENSGACG00000001601) #20	camk2d1 (ENSGACG00000001606) #22	ANK2 (ENSGACG00000001623) #23	ACO1 (ENSGACG00000001637)	PAQR9 (ENSGACG00000001686)
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	202	ENSLBEG00000014003	slc1a1 (ENSLBEG00000013947)	ACO1 (ENSLBEG00000013866)	PAQR9 (ENSLBEG00000013829)	ENSLBEG00000013803	frem1a (ENSLBEG00000013674)	tspan5a (ENSLBEG00000013625)	RAP1GDS1 (ENSLBEG00000013550)	AFAP1 (ENSLBEG00000013494)	ABLIM2 (ENSLBEG00000013428)	ENSLBEG00000013399	zcchc4 (ENSLBEG00000013353)	pde5ab (ENSLBEG00000013283)	mad2l1 (ENSLBEG00000013236)	ARSJ (ENSLBEG00000013201) #20	camk2d1 (ENSLBEG00000012749) #22	ANK2 (ENSLBEG00000012446) #23	ENSLBEG00000012364	ENSLBEG00000012348	ENSLBEG00000012328
Ballan wrasse	MODERN SPECIES	4821																ENSLBEG00000008790 #22
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000159636	ENSGT00940000154889	ENSGT00940000167725.b	ENSGT00940000167725.a	ENSGT00940000165569	ENSGT00940000158694	ENSGT00910000148102	ENSGT00940000158826	ENSGT00940000165381	ENSGT00940000160246.c.a	ENSGT00390000018004	ENSGT00530000063425.a.a.a.b	ENSGT00940000175443	ENSGT00940000160757	ENSGT00940000159769.a.b	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000155279.C.a.b.e.a #23	ENSGT00940000155279.C.a.b.f #23	ENSGT00390000014876	ENSGT00940000155475.g	ENSGT00950000182864.a.b.b.a.b.a.a.a.b	ENSGT00390000016928.c	ENSGT01030000234527.A.a.b.b.b	ENSGT00940000165832	ENSGT00400000023727.b	ENSGT00390000000214.a.b.l	ENSGT00390000005197.a.bb.a	ENSGT00390000001491.a	ENSGT00390000017890.b.a	ENSGT00390000011749
Atherinomorphae	ANCESTRAL SPECIES	34					ENSGT00940000163911.a.a.a.s	ENSGT00940000163911.a.a.b.a.a.a.b	ENSGT00940000174504.A	ENSGT01030000234978.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.l #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Oryzias	ANCESTRAL SPECIES	53									ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a	ENSGT00940000163911.a.a.b.a.a.a.b.b	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.l #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903
Oryzias_b	ANCESTRAL SPECIES	37	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.l #23	ENSGT00940000155279.C.a.a.k.a #23	ENSGT00940000155279.C.a.b.e.a #23
Javanese ricefish	MODERN SPECIES	9				slc1a1 (ENSOJAG00000022655)	RAP1GDS1 (ENSOJAG00000022683)	TSPAN5 (ENSOJAG00000022700)	ENSOJAG00000022714	ENSOJAG00000022745	PAQR9 (ENSOJAG00000022752)	AFAP1 (ENSOJAG00000022763)	mad2l1 (ENSOJAG00000022783)	pde5ab (ENSOJAG00000022845)	zcchc4 (ENSOJAG00000022997)	ABLIM2 (ENSOJAG00000023009)	ARSJ (ENSOJAG00000023050) #20	camk2d1 (ENSOJAG00000023195) #22	ANK2 (ENSOJAG00000023500) #23	ENSOJAG00000023530	trmt10a (ENSOJAG00000023535)	ENSOJAG00000023536	hacd4 (ENSOJAG00000023540)	mllt3 (ENSOJAG00000023610)	H2AZ1 (ENSOJAG00000023617)	ENSOJAG00000023625	ENSOJAG00000023631	rwdd (ENSOJAG00000023638)	ing2 (ENSOJAG00000023641)	ENSOJAG00000023645	ENSOJAG00000023648	SLX1 (ENSOJAG00000023649)	zgc:112271 (ENSOJAG00000023652)
Indian medaka	MODERN SPECIES	19	trmt10a (ENSOMEG00000004720)	spata6l (ENSOMEG00000004701)	slc1a1 (ENSOMEG00000004659)	RAP1GDS1 (ENSOMEG00000004595)	ENSOMEG00000004522	ENSOMEG00000004502	frem1a (ENSOMEG00000004492)	ENSOMEG00000004458	PAQR9 (ENSOMEG00000004455)	AFAP1 (ENSOMEG00000004442)	mad2l1 (ENSOMEG00000004375)	pde5ab (ENSOMEG00000004350)	zcchc4 (ENSOMEG00000004315)	ABLIM2 (ENSOMEG00000004271)	ARSJ (ENSOMEG00000004257) #20	ENSOMEG00000004226 #22	ENSOMEG00000004170	ENSOMEG00000004161 #23	ENSOMEG00000004145 #23	ENSOMEG00000004138	ENSOMEG00000004123 #23	ENSOMEG00000004113 #23	ENSOMEG00000004092	ENSOMEG00000004085	ENSOMEG00000004074	ENSOMEG00000004029	NRXN2 (ENSOMEG00000004004)	ENSOMEG00000003941	ENSOMEG00000003929	MAP3K11 (ENSOMEG00000000090)	drap1 (ENSOMEG00000003893)
Oryzias_a	ANCESTRAL SPECIES	124									ENSGT00950000183067.a.a	ENSGT00940000153395.a	ENSGT00940000155475.h	ENSGT00390000012556	ENSGT00950000182850.a.b.a.a	ENSGT00940000163911.a.a.b.a.a.a.b.b	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.l #23	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000027704	ENSORLG00000027111	ENSORLG00000024130	AFAP1 (ENSORLG00000020781)	mad2l1 (ENSORLG00000020784)	pde5ab (ENSORLG00000020785)	zcchc4 (ENSORLG00000019957)	ENSORLG00000026384	ENSORLG00000028204	ENSORLG00000023551	ABLIM2 (ENSORLG00000019949)	ENSORLG00000019929	ENSORLG00000022505	ARSJ (ENSORLG00000024656) #20	ENSORLG00000030026	ENSORLG00000019918 #22	ENSORLG00000010794	ANK2 (ENSORLG00000024491) #23	ENSORLG00000023218	ACO1 (ENSORLG00000020656)	ENSORLG00000022463	PAQR9 (ENSORLG00000030633)	ENSORLG00000022365	ENSORLG00000030033	frem1a (ENSORLG00000020663)	ENSORLG00000028709	ENSORLG00000024474	zgc:112271 (ENSORLG00000025424)	slx1b (ENSORLG00000012306)	ENSORLG00000023573	ENSORLG00000012282
Chinese medaka	MODERN SPECIES	4821																ENSOSIG00000012231 #22
Cyprinodontiformes	ANCESTRAL SPECIES	29									ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.l #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Aplocheiloidei	ANCESTRAL SPECIES	49									ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954.f #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.l #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903
Mangrove rivulus	MODERN SPECIES	135	ENSKMAG00000016645	AFAP1 (ENSKMAG00000016590)	ENSKMAG00000016544	ENSKMAG00000016532	ABLIM2 (ENSKMAG00000016369)	ENSKMAG00000016290	zcchc4 (ENSKMAG00000016236)	ENSKMAG00000016215	ENSKMAG00000016200	pde5ab (ENSKMAG00000016117)	mad2l1 (ENSKMAG00000016072)	ENSKMAG00000016059	ENSKMAG00000016050	ENSKMAG00000016042	ARSJ (ENSKMAG00000016034) #20	camk2d1 (ENSKMAG00000015956) #22	ENSKMAG00000015909	ENSKMAG00000015902 #23	ENSKMAG00000015876 #23	ENSKMAG00000015835 #23	ACO1 (ENSKMAG00000015759)	PAQR9 (ENSKMAG00000015741)	ENSKMAG00000015719	frem1a (ENSKMAG00000015571)
Turquoise killifish	MODERN SPECIES	1619	ENSNFUG00015005064	PELI3 (ENSNFUG00015005089)	ENSNFUG00015005128	CU570987.1 (ENSNFUG00015005274)	ENSNFUG00015005307	RBM4.1 (ENSNFUG00015005371)	RBM4.2 (ENSNFUG00015005382)	map4k2 (ENSNFUG00015005419)	MEN1 (ENSNFUG00015005684)	rtn3 (ENSNFUG00015005694)	ENSNFUG00015005707	ENSNFUG00015005722	ENSNFUG00015005726	ENSNFUG00015005730	ENSNFUG00015005738 #20	camk2d1 (ENSNFUG00015006024) #22	ANK2 (ENSNFUG00015011785) #23	STAG2 (ENSNFUG00015012992)	ENSNFUG00015014657	PSMD10 (ENSNFUG00015014781)	NXT2 (ENSNFUG00015017088)	XIAP (ENSNFUG00015017129)	ENSNFUG00015017131	ENSNFUG00015017137	ACO1 (ENSNFUG00015017153)	PAQR9 (ENSNFUG00015017320)	FREM1A (ENSNFUG00015017335)	ENSNFUG00015017434	TSPAN5 (ENSNFUG00015017446)	RAP1GDS1 (ENSNFUG00015017492)	SLC1A1 (ENSNFUG00015017986)
Cyprinodontoidei	ANCESTRAL SPECIES	39									ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.k.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT01030000240214	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Poeciliinae	ANCESTRAL SPECIES	59	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000155429.a.a	ENSGT00990000203893	ENSGT00940000156990.q	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000168975
Poecilia	ANCESTRAL SPECIES	105					ENSGT00940000156990.q	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h.g	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000168975	ENSGT00770000121665.f	ENSGT00940000155279.C.a.a.l #23
NAME_6	ANCESTRAL SPECIES	538															ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00770000121665.f.a	ENSGT00940000155279.C.a.a.l #23
Amazon molly	DUPLICATION
Amazon molly	MODERN SPECIES	807																ENSPFOG00000000893 #22	ENSPFOG00000001565 #23	ENSPFOG00000022198
Amazon molly	MODERN SPECIES	781															ARSJ (ENSPFOG00000002029) #20	ENSPFOG00000021877 #22	PAQR9 (ENSPFOG00000002026)	ENSPFOG00000021925	ENSPFOG00000022203
Guppy	MODERN SPECIES	448	ENSPREG00000021859	ENSPREG00000021854	ENSPREG00000021842	ENSPREG00000021829	ENSPREG00000021823	PAQR9 (ENSPREG00000021816)	ACO1 (ENSPREG00000021791)	AFAP1 (ENSPREG00000021768)	ENSPREG00000021757	ABLIM2 (ENSPREG00000021724)	zcchc4 (ENSPREG00000021704)	ENSPREG00000021696	pde5ab (ENSPREG00000021683)	mad2l1 (ENSPREG00000021671)	ARSJ (ENSPREG00000021666) #20	camk2d1 (ENSPREG00000021625) #22	ENSPREG00000021607	ENSPREG00000021603 #23	ENSPREG00000021590 #23	ENSPREG00000021584	ENSPREG00000021564 #23	ENSPREG00000021539 #23	slc1a1 (ENSPREG00000021518)	RAP1GDS1 (ENSPREG00000021455)	ENSPREG00000021426	ENSPREG00000021422	tspan5a (ENSPREG00000021391)	ENSPREG00000021373	ENSPREG00000021369	ENSPREG00000021355	frem1a (ENSPREG00000021249)
Platyfish	MODERN SPECIES	5	RAP1GDS1 (ENSXMAG00000029432)	tspan5a (ENSXMAG00000024005)	ENSXMAG00000024410	ENSXMAG00000024260	frem1a (ENSXMAG00000015784)	ENSXMAG00000023868	ENSXMAG00000023410	ACO1 (ENSXMAG00000023603)	ENSXMAG00000020214	AFAP1 (ENSXMAG00000009021)	ABLIM2 (ENSXMAG00000028425)	pde5ab (ENSXMAG00000019230)	mad2l1 (ENSXMAG00000022079)	ENSXMAG00000022064	ARSJ (ENSXMAG00000013200) #20	camk2d1 (ENSXMAG00000028041) #22	ENSXMAG00000023501	ANK2 (ENSXMAG00000007067) #23	ENSXMAG00000027494	ENSXMAG00000022211	ENSXMAG00000026632	ENSXMAG00000029584	ENSXMAG00000026165	ENSXMAG00000025088	ENSXMAG00000021173	ENSXMAG00000029769	ENSXMAG00000025443	ENSXMAG00000028322	ENSXMAG00000026081	ENSXMAG00000024416	TBC1D14 (ENSXMAG00000011398)
NAME_4	ANCESTRAL SPECIES	294									ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00940000168370	ENSGT00390000012556	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a.k.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b
Mummichog	MODERN SPECIES	2187	ENSFHEG00000004812	ENSFHEG00000004838	ENSFHEG00000004851	znf16l (ENSFHEG00000004859)	acox3 (ENSFHEG00000004904)	NAT16 (ENSFHEG00000004930)	mtm1 (ENSFHEG00000004972)	MTMR1 (ENSFHEG00000005004)	AFAP1 (ENSFHEG00000005086)	ABLIM2 (ENSFHEG00000005197)	ENSFHEG00000005226	zcchc4 (ENSFHEG00000005245)	pde5ab (ENSFHEG00000005298)	mad2l1 (ENSFHEG00000005319)	ARSJ (ENSFHEG00000005333) #20	camk2d1 (ENSFHEG00000005414) #22	ENSFHEG00000005568 #23	ACO1 (ENSFHEG00000005619)	PAQR9 (ENSFHEG00000005637)	ENSFHEG00000005666
Sheepshead minnow	MODERN SPECIES	2233																ENSCVAG00000012265 #22
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT01100000263482.F	ENSGT00940000171869.A	ENSGT00940000171869.B	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000159769.a.a	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00940000161376	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438
Cichlidae	ANCESTRAL SPECIES	31	ENSGT00390000018549	ENSGT00940000157250	ENSGT01100000263482.F	ENSGT00940000171869.A	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00900000140979.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	18																ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000157772	ENSGT00940000162334	ENSGT00940000153289.a.a.b	ENSGT00940000156990	ENSGT00990000203893	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00530000062962.b.b	ENSGT00390000004438	ENSGT00940000155903	ENSGT00900000140979.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	227																ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23
Haplochromini	ANCESTRAL SPECIES	229																ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23
Burton s mouthbrooder	MODERN SPECIES	611									pias2 (ENSHBUG00000021152)	ube2l3b (ENSHBUG00000021175)	ydjc (ENSHBUG00000021209)	zgc:86811 (ENSHBUG00000021248)	rad17 (ENSHBUG00000021268)	ccdc125 (ENSHBUG00000021285)	isl1a (ENSHBUG00000021312)	ENSHBUG00000022193 #22	ENSHBUG00000022272 #23	ENSHBUG00000022291 #23	ENSHBUG00000022316 #23
Haplochromini_A	ANCESTRAL SPECIES	238																ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.b.e.a #23
Haplochromini_B	ANCESTRAL SPECIES	240																ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.b.e.a #23
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	520																ENSMZEG00005024927 #22	ENSMZEG00005024926 #23
Zebra mbuna	MODERN SPECIES	530																ENSMZEG00005025569 #22	ENSMZEG00005025571 #23
Eastern happy	MODERN SPECIES	15	ENSACLG00000008397	rrp36 (ENSACLG00000008408)	ENSACLG00000008417	ENSACLG00000008828	ENSACLG00000008839	ENSACLG00000008852	ENSACLG00000008856	ENSACLG00000008859	ENSACLG00000008862	ENSACLG00000009029	ENSACLG00000009049	ENSACLG00000009105	ENSACLG00000009141	ENSACLG00000009158	ENSACLG00000009289	ENSACLG00000009296 #22	ANK2 (ENSACLG00000009369) #23	ENSACLG00000009480	ENSACLG00000009999	ENSACLG00000010006	ENSACLG00000010010	ENSACLG00000010015	ENSACLG00000010039	ENSACLG00000010045	NXPE3 (ENSACLG00000010451)	ENSACLG00000010502	ENSACLG00000010513	ENSACLG00000010533	ENSACLG00000010552	ENSACLG00000010568	ENSACLG00000010575
P. nyererei	MODERN SPECIES	725																camk2d1 (ENSPNYG00000009960) #22	ENSPNYG00000010002 #23	ENSPNYG00000010059 #23	ENSPNYG00000010093 #23	ENSPNYG00000010106 #23
Nile tilapia	MODERN SPECIES	15	ENSONIG00000030225	ENSONIG00000018764	ENSONIG00000009934	mllt3 (ENSONIG00000018999)	ENSONIG00000018998	ENSONIG00000035517	ENSONIG00000035946	ENSONIG00000007325	ENSONIG00000030349	ENSONIG00000039989	ENSONIG00000000440	ENSONIG00000038703	ENSONIG00000038704	ENSONIG00000016386	ENSONIG00000040138	camk2d1 (ENSONIG00000016392) #22	ANK2 (ENSONIG00000016398) #23	ENSONIG00000003581	ENSONIG00000035129	ENSONIG00000010399	ENSONIG00000038490	ENSONIG00000012764	ENSONIG00000001447	ENSONIG00000041245	ENSONIG00000041921	ENSONIG00000037070	ENSONIG00000031111	PAQR9 (ENSONIG00000040401)	ENSONIG00000019867	frem1a (ENSONIG00000019862)	ENSONIG00000043189
Pomacentridae	ANCESTRAL SPECIES	127		ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000159769.a.a.g.a	ENSGT00940000155279.C.a.a #23	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772
Bicolor damselfish	MODERN SPECIES	1745															ARSJ (ENSSPAG00000007401) #20	ENSSPAG00000007364 #22
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT01100000263482.F	ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT00950000183712	ENSGT01030000234563.b.a.a	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000156633.d.b	ENSGT00940000163999.b.a.b
Spiny chromis	MODERN SPECIES	535																camk2d1 (ENSAPOG00000009363) #22	ANK2 (ENSAPOG00000009249) #23	ENSAPOG00000009097	trmt10a (ENSAPOG00000009061)	spata6l (ENSAPOG00000009017)	slc1a1 (ENSAPOG00000008953)	RAP1GDS1 (ENSAPOG00000008879)	TSPAN5 (ENSAPOG00000008786)	frem1a (ENSAPOG00000008735)	ENSAPOG00000008711	PAQR9 (ENSAPOG00000008687)	ACO1 (ENSAPOG00000008670)	PPM1K (ENSAPOG00000008578)	ENSAPOG00000008540	ENSAPOG00000008517	rnf150b (ENSAPOG00000000222)
Amphiprion	ANCESTRAL SPECIES	82			ENSGT00940000154521.A	ENSGT00940000157318	ENSGT00390000005589.a.a	ENSGT01030000234563.b.a.a	ENSGT01100000263473.a.b.g.a.a.b.b.b.b.b	ENSGT01030000234978.a.a.b	ENSGT00950000183067.a.a	ENSGT00950000182850.a.b.a.a	ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000181321	ENSGT00730000111645.a	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00990000203893	ENSGT00940000156990	ENSGT00940000153289.a.a.b	ENSGT00940000162334	ENSGT00940000157772	ENSGT00940000156633.d.b
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000015787	SORCS2 (ENSAPEG00000015665)	ENSAPEG00000015639	ENSAPEG00000015633	ENSAPEG00000015614	ENSAPEG00000015604	ENSAPEG00000015592	AFAP1 (ENSAPEG00000015549)	ABLIM2 (ENSAPEG00000015498)	ENSAPEG00000015472	zcchc4 (ENSAPEG00000015422)	ENSAPEG00000015356	pde5ab (ENSAPEG00000015273)	mad2l1 (ENSAPEG00000015250)	ARSJ (ENSAPEG00000015214) #20	camk2d1 (ENSAPEG00000015153) #22	ANK2 (ENSAPEG00000014987) #23	ENSAPEG00000014935	C4orf54 (ENSAPEG00000014909)	ENSAPEG00000014895	trmt10a (ENSAPEG00000014878)	ENSAPEG00000014841	slc1a1 (ENSAPEG00000014778)	RAP1GDS1 (ENSAPEG00000014708)	ENSAPEG00000014622	ENSAPEG00000014599	frem1a (ENSAPEG00000014471)	ENSAPEG00000014448	PAQR9 (ENSAPEG00000014435)	ACO1 (ENSAPEG00000014370)	PPM1K (ENSAPEG00000014344)
Clown anemonefish	MODERN SPECIES	2084															ENSAOCG00000015113	ENSAOCG00000015142 #22
Otomorpha	ANCESTRAL SPECIES	312													ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT01100000263495.E	ENSGT00940000156819.b	ENSGT00940000156996.f.a.b	ENSGT00390000004124.j	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000155078.a.a	ENSGT00940000161027.b	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b	ENSGT00940000159589	ENSGT00390000005147	ENSGT00650000094910
Otophysi	ANCESTRAL SPECIES	81														ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000155150.a #22	ENSGT00940000159954 #20	ENSGT00940000159769.b	ENSGT00940000155279.C.a.a #23	ENSGT00940000155059	ENSGT00490000043388.b.b	ENSGT00940000156304.d	ENSGT00940000164997.a	ENSGT00950000183149.A.e	ENSGT00940000156731.q.a	ENSGT00390000001029	ENSGT00940000159246	ENSGT00390000003248.b	ENSGT00940000164689	ENSGT00940000154242.b.h	ENSGT00940000156694
Cyprinoidei	ANCESTRAL SPECIES	165													ENSGT00940000155475.h	ENSGT00940000153395.a	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT00940000155059	ENSGT00490000043388.b.b	ENSGT00940000156304.d	ENSGT00940000164997.a	ENSGT00950000183149.A.e	ENSGT00940000156731.q.a	ENSGT00390000001029	ENSGT00940000159246	ENSGT00390000003248.b	ENSGT00940000164689	ENSGT00940000154242.b.h	ENSGT00940000166366	ENSGT00390000009040	ENSGT00940000154185
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	681												ENSGT00940000169946	ENSGT00940000155475.h.b	ENSGT00940000153395.a.a	ENSGT00940000159954 #20	ENSGT00940000155150.a.i.a #22	ENSGT00940000155150.a.j #22	ENSGT00940000155279.C.a.a.o #23	ENSGT00940000155059	ENSGT00490000043388.b.b.k	ENSGT00940000156304.d.d	ENSGT00940000156304.d.c	ENSGT00940000164997.a	ENSGT00940000153141.B.a.x.b.b
Cyprininae_a	ANCESTRAL SPECIES	94	ENSGT00940000157000.p	ENSGT00950000183176.b.e.v	ENSGT00940000161325.m	ENSGT00510000047505.g	ENSGT00940000157787.a	ENSGT00390000017259.s.a	ENSGT00390000012337.k	ENSGT00940000157348.q	ENSGT00390000008797.a	ENSGT00950000182909.b.b.b.j	ENSGT00940000169946	ENSGT00940000154848.b.j.b.a	ENSGT00940000155475.h.b	ENSGT00940000153395.a.a	ENSGT00940000159954 #20	ENSGT00940000155150.a.i.a #22	ENSGT00940000155150.a.j #22	ENSGT00940000155279.C.a.a.o #23	ENSGT00940000155059.m	ENSGT00490000043388.b.b.k	ENSGT00940000156304.d.d	ENSGT00940000164997.a.b	ENSGT00940000153141.B.a.w	ENSGT00940000153141.B.a.x.b.a	ENSGT00950000183149.A.e	ENSGT00940000156731.q.a.c	ENSGT00390000001029	ENSGT00940000159246.j	ENSGT00390000003248.b.p.a	ENSGT00940000164689	ENSGT00940000154242.b.h.c
Common carp reference	MODERN SPECIES		CDT1 (ENSCCRG00000031905)	aprt (ENSCCRG00000069045)	PIEZO1 (ENSCCRG00000025020)	ctu2 (ENSCCRG00000036199)	RNF166 (ENSCCRG00000050840)	snai3 (ENSCCRG00000005886)	ENSCCRG00000011612	ENSCCRG00000072167	ENSCCRG00000082429	ENSCCRG00000062459	ENSCCRG00000052335	ENSCCRG00000061508	pde5ab (ENSCCRG00000072110)	mad2l1 (ENSCCRG00000015071)	ARSJ (ENSCCRG00000054414) #20	camk2d1 (ENSCCRG00000058490) #22	ENSCCRG00000058972	ANK2 (ENSCCRG00000054744) #23	ENSCCRG00000067787	ENSCCRG00000016822	ggh (ENSCCRG00000010915)	ENSCCRG00000081572	ENSCCRG00000048452	ENSCCRG00000061304	penkb (ENSCCRG00000050330)	sdr16c5b (ENSCCRG00000059225)	chchd7 (ENSCCRG00000041163)	plag1 (ENSCCRG00000069008)	RPS20 (ENSCCRG00000069845)	zgc:56231 (ENSCCRG00000052170)	ENSCCRG00000056482
Goldfish	MODERN SPECIES	47	ACSF3 (ENSCARG00000034042)	CBFA2T3 (ENSCARG00000035292)	PABPN1L (ENSCARG00000035274)	trappc2l (ENSCARG00000035238)	galns (ENSCARG00000033794)	aprt (ENSCARG00000033617)	CDT1 (ENSCARG00000033592)	PIEZO1 (ENSCARG00000031704)	ctu2 (ENSCARG00000030987)	RNF166 (ENSCARG00000030936)	snai3 (ENSCARG00000030922)	ENSCARG00000030364	pde5ab (ENSCARG00000029696)	mad2l1 (ENSCARG00000029646)	ARSJ (ENSCARG00000029638) #20	camk2d1 (ENSCARG00000029535) #22	ANK2 (ENSCARG00000020228) #23	NSMAF (ENSCARG00000017224)	ggh (ENSCARG00000017078)	ASPH (ENSCARG00000016773)	ENSCARG00000016751	sdcbp (ENSCARG00000016730)	ENSCARG00000016725	rps4x (ENSCARG00000016641)	cited1 (ENSCARG00000016627)	hdac8 (ENSCARG00000016264)	PHKA1 (ENSCARG00000015395)	leap2 (ENSCARG00000015338)	bmp15 (ENSCARG00000015333)	ENSCARG00000015321	got2b (ENSCARG00000014368)
Cyprininae	ANCESTRAL SPECIES	1044													ENSGT00940000154848.b.j.b.b	ENSGT00940000155475.h.a	ENSGT00940000153395.a.b	ENSGT00940000155150.a.i.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000155150.a.i.b #22
Common carp reference	MODERN SPECIES	6	ENSCCRG00000056424	ENSCCRG00000069203	ENSCCRG00000052964	sdcbp (ENSCCRG00000048432)	ENSCCRG00000068789	ENSCCRG00000075733	ggh (ENSCCRG00000016745)	ENSCCRG00000050571	ENSCCRG00000069367	ENSCCRG00000021518	ENSCCRG00000067416	ENSCCRG00000065471 #23	ENSCCRG00000065627	ENSCCRG00000044710	ENSCCRG00000065192	ENSCCRG00000017472 #22	ENSCCRG00000078745	ENSCCRG00000076227	ENSCCRG00000015113	ENSCCRG00000011657	ENSCCRG00000056580	ENSCCRG00000080509	RNF166 (ENSCCRG00000072154)	PIEZO1 (ENSCCRG00000079664)	CDT1 (ENSCCRG00000026904)	galns (ENSCCRG00000033024)	trappc2l (ENSCCRG00000038830)	ENSCCRG00000003415	CBFA2T3 (ENSCCRG00000074750)	ENSCCRG00000079122	ACSF3 (ENSCCRG00000078392)
Goldfish	MODERN SPECIES	25	ENSCARG00000067998	DCTN6 (ENSCARG00000068011)	ENSCARG00000068028	cldnd1a (ENSCARG00000068030)	ENSCARG00000068038	CBFA2T3 (ENSCARG00000068044)	galns (ENSCARG00000068054)	CDT1 (ENSCARG00000068072)	aprt (ENSCARG00000068085)	PIEZO1 (ENSCARG00000068112)	RNF166 (ENSCARG00000068444)	ENSCARG00000068469	pde5ab (ENSCARG00000068694)	ENSCARG00000068853	mad2l1 (ENSCARG00000005849)	camk2d1 (ENSCARG00000005922) #22	spink4 (ENSCARG00000006313)	mttp (ENSCARG00000006403)	ENSCARG00000008192	xpa (ENSCARG00000008200)	pla2g12a (ENSCARG00000008282)	saraf (ENSCARG00000008289)	slc24a2 (ENSCARG00000008301)	tspan5b (ENSCARG00000008342)	grk4 (ENSCARG00000008463)	ENSCARG00000011610	iqce (ENSCARG00000011619)	ttyh3b (ENSCARG00000011635)	ENSCARG00000011663	ENSCARG00000011674	ENSCARG00000011892
Cyprininae	ANCESTRAL SPECIES	681											ENSGT00940000169946	ENSGT00940000155475.h.b	ENSGT00940000153395.a.a	ENSGT00940000159954 #20	ENSGT00940000155150.a.i.a #22	ENSGT00940000155150.a.j #22	ENSGT00940000155279.C.a.a.o #23	ENSGT00940000155059	ENSGT00490000043388.b.b.k	ENSGT00940000156304.d.d	ENSGT00940000156304.d.c	ENSGT00940000164997.a	ENSGT00940000153141.B.a.x.b.b
Cyprininae_a	ANCESTRAL SPECIES	94	ENSGT00950000183176.b.e.v	ENSGT00940000161325.m	ENSGT00510000047505.g	ENSGT00940000157787.a	ENSGT00390000017259.s.a	ENSGT00390000012337.k	ENSGT00940000157348.q	ENSGT00390000008797.a	ENSGT00950000182909.b.b.b.j	ENSGT00940000169946	ENSGT00940000154848.b.j.b.a	ENSGT00940000155475.h.b	ENSGT00940000153395.a.a	ENSGT00940000159954 #20	ENSGT00940000155150.a.i.a #22	ENSGT00940000155150.a.j #22	ENSGT00940000155279.C.a.a.o #23	ENSGT00940000155059.m	ENSGT00490000043388.b.b.k	ENSGT00940000156304.d.d	ENSGT00940000164997.a.b	ENSGT00940000153141.B.a.w	ENSGT00940000153141.B.a.x.b.a	ENSGT00950000183149.A.e	ENSGT00940000156731.q.a.c	ENSGT00390000001029	ENSGT00940000159246.j	ENSGT00390000003248.b.p.a	ENSGT00940000164689	ENSGT00940000154242.b.h.c	ENSGT00940000156694.n.a.a
Golden-line barbel	MODERN SPECIES	700													pde5ab (ENSSGRG00000017019)	mad2l1 (ENSSGRG00000018423)	ARSJ (ENSSGRG00000018424) #20	camk2d1 (ENSSGRG00000018425) #22	ANK2 (ENSSGRG00000018639) #23	NSMAF (ENSSGRG00000019206)	ggh (ENSSGRG00000019725)	ASPH (ENSSGRG00000019736)	sdcbp (ENSSGRG00000019916)	ENSSGRG00000019918
Zebrafish	MODERN SPECIES	22	csnk2a2a (ENSDARG00000012818)	ENSDARG00000059534	senp8 (ENSDARG00000019595)	myo9aa (ENSDARG00000076729)	scamp2l (ENSDARG00000017010)	enosf1 (ENSDARG00000038359)	ADAMTS7 (ENSDARG00000102478)	ENSDARG00000062111	ENSDARG00000115543	drd4b (ENSDARG00000035820)	sirt3 (ENSDARG00000035819)	pde5ab (ENSDARG00000051915)	ENSDARG00000117126	mad2l1 (ENSDARG00000004713)	ARSJ (ENSDARG00000077590) #20	camk2d1 (ENSDARG00000043010) #22	ank2b (ENSDARG00000043313) #23	NSMAF (ENSDARG00000051920)	ggh (ENSDARG00000037176)	ASPH (ENSDARG00000078703)	sdcbp (ENSDARG00000030097)	ENSDARG00000004051	penkb (ENSDARG00000036045)	sdr16c5b (ENSDARG00000017794)	chchd7 (ENSDARG00000068156)	plag1 (ENSDARG00000051926)	zgc:56231 (ENSDARG00000010332)	sox17 (ENSDARG00000101717)	sox32 (ENSDARG00000100591)	mrpl15 (ENSDARG00000101306)	lypla1 (ENSDARG00000104228)
Characiphysae	ANCESTRAL SPECIES																	ENSGT00940000155150.a #22
Channel catfish	MODERN SPECIES	26	taf6l (ENSIPUG00000018008)	ENSIPUG00000017999	ENSIPUG00000017944	ENSIPUG00000017910	Rab1A (ENSIPUG00000017890)	PELI3 (ENSIPUG00000017878)	rce1 (ENSIPUG00000017856)	cd248a (ENSIPUG00000017847)	ENSIPUG00000017826	znf16l (ENSIPUG00000017815)	nitr4 (ENSIPUG00000017774)	nitr2 (ENSIPUG00000017759)	pde5a (ENSIPUG00000017710)	mad2l1 (ENSIPUG00000017647)	ARSJ (ENSIPUG00000017638) #20	camk2d1 (ENSIPUG00000017278) #22	ENSIPUG00000017188 #23	ENSIPUG00000017145 #23	Nsmaf (ENSIPUG00000017014)	ggh (ENSIPUG00000016985)	ASPH (ENSIPUG00000016950)	sdcbp (ENSIPUG00000016607)	ENSIPUG00000016568	penkb (ENSIPUG00000016558)	Sdr16c5 (ENSIPUG00000016516)	chchd7 (ENSIPUG00000016484)	PLAG1 (ENSIPUG00000016450)	rps20 (ENSIPUG00000016393)	zgc:56231 (ENSIPUG00000016321)	ENSIPUG00000016289	ENSIPUG00000016272
Clupeiformes	ANCESTRAL SPECIES	216				ENSGT00390000002231	ENSGT00510000049875	ENSGT00390000006979.a	ENSGT00940000164430.a.a	ENSGT00390000010184	ENSGT00950000182887.C.a.a.a.a.a	ENSGT00940000153299.a.a	ENSGT00940000154344.a	ENSGT00940000153669.b.o	ENSGT00940000157029	ENSGT00730000111366	ENSGT00940000159954 #20	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.a #23	ENSGT01100000263495.E	ENSGT00940000156819.b	ENSGT00940000156996.f.a.b	ENSGT00390000004124.j	ENSGT00950000183050.b.b.b.a.b.b	ENSGT00940000155078.a.a	ENSGT00940000161027.b	ENSGT00940000155293.b	ENSGT00640000091486.a	ENSGT00940000166499	ENSGT01030000234573.B.c.b.b	ENSGT00940000159589	ENSGT00390000005147	ENSGT00600000084617
Atlantic herring	MODERN SPECIES	9	ENSCHAG00000026274	DLG4 (ENSCHAG00000022658)	ENSCHAG00000022394	ptgr1.1 (ENSCHAG00000022381)	nat8l (ENSCHAG00000022379)	ENSCHAG00000022336	haus3 (ENSCHAG00000022332)	ENSCHAG00000022329	nelfa (ENSCHAG00000022143)	mtmr1a (ENSCHAG00000021928)	mtm1 (ENSCHAG00000020860)	ENSCHAG00000020803	ENSCHAG00000020780	ENSCHAG00000020762	ARSJ (ENSCHAG00000020754) #20	camk2d1 (ENSCHAG00000020557) #22	ANK2 (ENSCHAG00000013537) #23	znf16l (ENSCHAG00000013361)	ENSCHAG00000013314	SSTR4 (ENSCHAG00000013311)	cd248a (ENSCHAG00000013289)	RCE1 (ENSCHAG00000013209)	PELI3 (ENSCHAG00000013184)	ENSCHAG00000013009	ENSCHAG00000012709	ENSCHAG00000012689	taf6l (ENSCHAG00000012510)	mta2 (ENSCHAG00000011289)	EML3 (ENSCHAG00000009353)	ecsit (ENSCHAG00000009292)	ENSCHAG00000009282
Denticle herring	MODERN SPECIES		lpcat4 (ENSDCDG00000034080)	nop10 (ENSDCDG00000034078)	SLC12A6 (ENSDCDG00000032389)	tox4b (ENSDCDG00000032304)	supt16h (ENSDCDG00000032293)	ENSDCDG00000032290	ENSDCDG00000032288	ENSDCDG00000032283	ENSDCDG00000032280	ENSDCDG00000032279	ENSDCDG00000032278	ENSDCDG00000032276	ENSDCDG00000032274	zgc:162509 (ENSDCDG00000032272)	ARSJ (ENSDCDG00000032269) #20	ENSDCDG00000031373 #22	ANK2 (ENSDCDG00000007938) #23	znf16l (ENSDCDG00000005715)	ENSDCDG00000005709	cd248a (ENSDCDG00000005699)	RCE1 (ENSDCDG00000005691)	PELI3 (ENSDCDG00000005687)	ENSDCDG00000005609	ENSDCDG00000005593	ENSDCDG00000005591	taf6l (ENSDCDG00000005575)	cth1 (ENSDCDG00000005566)	mta2 (ENSDCDG00000003882)	EML3 (ENSDCDG00000001268)	ecsit (ENSDCDG00000001002)	ENSDCDG00000000994
Osteoglossiformes	ANCESTRAL SPECIES	464												ENSGT00940000162193	ENSGT00390000003601.b	ENSGT00950000183177.a.b.b	ENSGT00390000016928.c.d	ENSGT00940000155150.a #22	ENSGT00940000155279.C.a.b #23	ENSGT00390000014876
Asian bonytongue	MODERN SPECIES	7	ENSSFOG00015024892	ENSSFOG00015009667	ENSSFOG00015026904	ENSSFOG00015029325	ENSSFOG00015032046	ENSSFOG00015009779	RPS6KB2 (ENSSFOG00015009820)	ENSSFOG00015009866	ENSSFOG00015009970	ENSSFOG00015009984	dtx4a (ENSSFOG00015025212)	ENSSFOG00015010021	exoc1l (ENSSFOG00015008063)	WFS1 (ENSSFOG00015008008)	chic2 (ENSSFOG00015007962)	camk2d1 (ENSSFOG00015007879) #22	ANK2 (ENSSFOG00015028530) #23	hpf1 (ENSSFOG00015007682)	ENSSFOG00015007597	ENSSFOG00015028400	ENSSFOG00015028148	ENSSFOG00015025711	ENSSFOG00015007477	ENSSFOG00015027094	ptgr1.1 (ENSSFOG00015007431)	faah2b (ENSSFOG00015007377)	ENSSFOG00015024283	DOK1 (ENSSFOG00015031712)	vps37c (ENSSFOG00015027279)	tmem176 (ENSSFOG00015007250)	kdm2aa (ENSSFOG00015007191)
P. kingsleyae	MODERN SPECIES	214						ccdc96 (ENSPKIG00000017269)	tada2b (ENSPKIG00000017247)	SORCS2 (ENSPKIG00000016962)	AFAP1 (ENSPKIG00000016612)	ABLIM2 (ENSPKIG00000016529)	ENSPKIG00000016513	zcchc4 (ENSPKIG00000016454)	pde5ab (ENSPKIG00000016389)	mad2l1 (ENSPKIG00000016368)	ARSJ (ENSPKIG00000016348) #20	camk2d1 (ENSPKIG00000016240) #22	ENSPKIG00000016197	ANK2 (ENSPKIG00000016128) #23	CLCN3 (ENSPKIG00000016012)	ENSPKIG00000015951	mfap3l (ENSPKIG00000015936)	AADAT (ENSPKIG00000015890)	ino80b (ENSPKIG00000015858)	intu (ENSPKIG00000015816)	ENSPKIG00000015789	trmt10b (ENSPKIG00000015763)	ENSPKIG00000015743	ENSPKIG00000015625	SVEP1 (ENSPKIG00000015493)	zgc:56493 (ENSPKIG00000015449)	haus3 (ENSPKIG00000015434)
Spotted gar	MODERN SPECIES	670	TYRP1 (ENSLOCG00000013264)	LURAP1L (ENSLOCG00000013262)	MPDZ (ENSLOCG00000013247)	ADGRL3 (ENSLOCG00000013236)	ENSLOCG00000013213	ENSLOCG00000013208	DCTN6 (ENSLOCG00000013206)	RBPMS (ENSLOCG00000013199)	gtf2e2 (ENSLOCG00000013191)	ENSLOCG00000013178	pi4k2b (ENSLOCG00000013173)	ENSLOCG00000013161	zcchc4 (ENSLOCG00000013153)	pde5ab (ENSLOCG00000013138)	ARSJ (ENSLOCG00000013135) #20	camk2d1 (ENSLOCG00000013115) #22	ANK2 (ENSLOCG00000013099) #23	CLCN3 (ENSLOCG00000013089)	hpf1 (ENSLOCG00000013083)	cbr4 (ENSLOCG00000013078)	PALLD (ENSLOCG00000013061)	fam114a1 (ENSLOCG00000013058)	klhl5 (ENSLOCG00000013045)	WDR19 (ENSLOCG00000013035)	rfc1 (ENSLOCG00000013023)	KLB (ENSLOCG00000013013)	rpl9 (ENSLOCG00000013006)	lias (ENSLOCG00000013001)	ugdh (ENSLOCG00000012995)	ube2kb (ENSLOCG00000012989)	pds5a (ENSLOCG00000012981)
Elephant shark	MODERN SPECIES	1535															ARSJ (ENSCMIG00000009241) #20	CAMK2D (ENSCMIG00000008025) #22	ENSCMIG00000007650	ENSCMIG00000007647	ANK2 (ENSCMIG00000007603) #23	ENSCMIG00000007559	larp7 (ENSCMIG00000007555) #25	ENSCMIG00000007548	ALPK1 (ENSCMIG00000007529) #28	TIFA (ENSCMIG00000007521) #29	AP1AR (ENSCMIG00000007516) #30	FAM241A (ENSCMIG00000007507) #31	pitx2 (ENSCMIG00000007502) #33	enpep (ENSCMIG00000007462) #34	elovl6 (ENSCMIG00000007452) #37	egf (ENSCMIG00000007447)	lrit3b (ENSCMIG00000007444)