Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173 #25	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35	ENSGT00940000161237 #36	ENSGT00500000045816
Glires	ANCESTRAL SPECIES		ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173 #25	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35	ENSGT00940000161237 #36	ENSGT00500000045816
Rodentia	ANCESTRAL SPECIES		ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570 #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000163570 #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35	ENSGT00940000161237 #36
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00730000110988	ENSGT00940000163721 #9	ENSGT00390000000797 #10	ENSGT00940000160194 #11	ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000163570.a #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00940000155505.a #35	ENSGT00940000161237 #36	ENSGT00940000153665.b.a.b #37	ENSGT00500000045816
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00730000110988	ENSGT00940000163721 #9	ENSGT00390000000797 #10	ENSGT00940000160194 #11	ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000163570.a #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00940000155505.a #35	ENSGT00940000161237 #36	ENSGT00940000153665.b.a.b #37	ENSGT00500000045816
Hystricomorpha_b	ANCESTRAL SPECIES	54	ENSGT00730000110988	ENSGT00940000163721 #9	ENSGT00390000000797 #10	ENSGT00940000160194 #11	ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000161273 #19	ENSGT00940000163540 #20	ENSGT00940000160589.k	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000163570.a #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00940000155505.a #35	ENSGT00940000161237 #36	ENSGT00940000153665.b.a.b #37	ENSGT00500000045816	ENSGT00390000003860
Long-tailed chinchilla	MODERN SPECIES	171	EPS15 (ENSCLAG00000005042) #7	TTC39A (ENSCLAG00000005328) #8	ENSCLAG00000006939 #9	C1orf185 (ENSCLAG00000007634) #10	CDKN2C (ENSCLAG00000007763) #11	FAF1 (ENSCLAG00000008153) #12	DMRTA2 (ENSCLAG00000008314) #13	ELAVL4 (ENSCLAG00000005476) #14	AGBL4 (ENSCLAG00000006735) #15	BEND5 (ENSCLAG00000007168) #16	SPATA6 (ENSCLAG00000007504) #17	SLC5A9 (ENSCLAG00000007839) #18	TRABD2B (ENSCLAG00000005900) #19	ENSCLAG00000005985 #20	STIL (ENSCLAG00000006217) #21	TAL1 (ENSCLAG00000006842) #22	PDZK1IP1 (ENSCLAG00000007015) #23	CYP4B1 (ENSCLAG00000007349) #24	ENSCLAG00000004484 #25	ENSCLAG00000005036 #26	ENSCLAG00000005609 #27	EFCAB14 (ENSCLAG00000005792) #28	TEX38 (ENSCLAG00000006425) #29	ATPAF1 (ENSCLAG00000006456) #30	MOB3C (ENSCLAG00000006684) #31	MKNK1 (ENSCLAG00000003888) #32	ENSCLAG00000004751 #33	KNCN (ENSCLAG00000004788) #34	DMBX1 (ENSCLAG00000004842) #35	FAAH (ENSCLAG00000004917) #36	NSUN4 (ENSCLAG00000005205) #37
Degu	MODERN SPECIES	148	DMRTA2 (ENSODEG00000006537) #13	ELAVL4 (ENSODEG00000006770) #14	ENSODEG00000007109	AGBL4 (ENSODEG00000009564) #15	ENSODEG00000019354	ENSODEG00000006988	BEND5 (ENSODEG00000007742) #16	SPATA6 (ENSODEG00000006382) #17	SLC5A9 (ENSODEG00000007740) #18	TRABD2B (ENSODEG00000007567) #19	ENSODEG00000008585	ENSODEG00000019646	ENSODEG00000006760	ENSODEG00000007423	STIL (ENSODEG00000007478) #21	TAL1 (ENSODEG00000006602) #22	PDZK1IP1 (ENSODEG00000008906) #23	CYP4X1 (ENSODEG00000007165)	ENSODEG00000006889 #26	ENSODEG00000019580	ENSODEG00000006838 #27	CYP4B1 (ENSODEG00000010933) #24	ENSODEG00000007435	EFCAB14 (ENSODEG00000008413) #28	TEX38 (ENSODEG00000010166) #29	ATPAF1 (ENSODEG00000010525) #30	MOB3C (ENSODEG00000009151) #31	ENSODEG00000009653 #32	KNCN (ENSODEG00000007576) #34	DMBX1 (ENSODEG00000009303) #35	ENSODEG00000012863
Guinea pig	MODERN SPECIES	187											ENSCPOG00000002481 #18	TRABD2B (ENSCPOG00000011762) #19	FOXD2 (ENSCPOG00000039211)	CMPK1 (ENSCPOG00000031837)	STIL (ENSCPOG00000003560) #21	TAL1 (ENSCPOG00000003558) #22	PDZK1IP1 (ENSCPOG00000037323) #23	CYP4X1 (ENSCPOG00000002997)	ENSCPOG00000011024 #25
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000043536	ENSHGLG00000039566	ENSHGLG00000034647 #16	ENSHGLG00000011360 #16	SPATA6 (ENSHGLG00000014205) #17	ENSHGLG00000002670	SLC5A9 (ENSHGLG00000003161) #18	ENSHGLG00000037697	ENSHGLG00000010693 #19	ENSHGLG00000020805	ENSHGLG00000049793	FOXE3 (ENSHGLG00000034395)	ENSHGLG00000001416 #20	STIL (ENSHGLG00000001713) #21	ENSHGLG00000001377	TAL1 (ENSHGLG00000047206) #22	PDZK1IP1 (ENSHGLG00000001653) #23	CYP4X1 (ENSHGLG00000002395)	ENSHGLG00000050738 #25	ENSHGLG00000008660 #24	ENSHGLG00000036589	ENSHGLG00000003682 #25	ENSHGLG00000001535 #27	ENSHGLG00000044650 #24	ENSHGLG00000019567	EFCAB14 (ENSHGLG00000005336) #28	TEX38 (ENSHGLG00000004105) #29	ATPAF1 (ENSHGLG00000040111) #30	MOB3C (ENSHGLG00000032969) #31	MKNK1 (ENSHGLG00000032460) #32	KNCN (ENSHGLG00000042058) #34
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A.d	ENSGT00940000162562.A.c	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a.a #25	ENSGT00940000163570.c #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35	ENSGT00940000161237 #36	ENSGT00500000045816
Eurasian red squirrel	MODERN SPECIES		FAF1 (ENSSVLG00005014843) #12	DMRTA2 (ENSSVLG00005014792) #13	ELAVL4 (ENSSVLG00005014154) #14	BEND5 (ENSSVLG00005013425) #16	AGBL4 (ENSSVLG00005013331) #15	SPATA6 (ENSSVLG00005013178) #17	SLC5A9 (ENSSVLG00005012665) #18	ENSSVLG00005012469	ENSSVLG00005012369	ENSSVLG00005012317	TRABD2B (ENSSVLG00005012216) #19	FOXD2 (ENSSVLG00005012190)	FOXE3 (ENSSVLG00005012158)	ENSSVLG00005012034	STIL (ENSSVLG00005011246) #21	TAL1 (ENSSVLG00005011145) #22	PDZK1IP1 (ENSSVLG00005011099) #23	CYP4X1 (ENSSVLG00005010957)	ENSSVLG00005010122 #25	ENSSVLG00005009845 #25	ENSSVLG00005008878 #25	ENSSVLG00005008688	ENSSVLG00005008487 #27	CYP4B1 (ENSSVLG00005008221) #24	ENSSVLG00005008165	EFCAB14 (ENSSVLG00005008138) #28	ATPAF1 (ENSSVLG00005008043) #30	MOB3C (ENSSVLG00005008013) #31	ENSSVLG00005007933	KNCN (ENSSVLG00005007856) #34	TMEM275 (ENSSVLG00005007823)
Marmotini	ANCESTRAL SPECIES		ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.e.a	ENSGT00940000162562.A.d	ENSGT00940000164707.e.b	ENSGT00940000162562.A.c	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a.a #25	ENSGT00940000163570.d #27	ENSGT00940000163570.c #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35	ENSGT00940000161237 #36
Alpin marmot	MODERN SPECIES	15	ENSMMMG00000017613	ELAVL4 (ENSMMMG00000017637) #14	AGBL4 (ENSMMMG00000017802) #15	BEND5 (ENSMMMG00000017823) #16	ENSMMMG00000017834 #17	SLC5A9 (ENSMMMG00000017850) #18	ENSMMMG00000017885	ENSMMMG00000017897	ENSMMMG00000017906	ENSMMMG00000017918	ENSMMMG00000017939	TRABD2B (ENSMMMG00000017951) #19	FOXD2 (ENSMMMG00000017982)	CMPK1 (ENSMMMG00000017986)	STIL (ENSMMMG00000018013) #21	ENSMMMG00000018085 #22	PDZK1IP1 (ENSMMMG00000018092) #23	CYP4X1 (ENSMMMG00000018100)	ENSMMMG00000018152 #27	ENSMMMG00000018214 #25	ENSMMMG00000018225	ENSMMMG00000018229 #27	CYP4B1 (ENSMMMG00000018250) #24	EFCAB14 (ENSMMMG00000018258) #28	ATPAF1 (ENSMMMG00000018290) #30	MOB3C (ENSMMMG00000018342) #31	ENSMMMG00000018347	KNCN (ENSMMMG00000018376) #34	TMEM275 (ENSMMMG00000018381)	DMBX1 (ENSMMMG00000018386) #35	FAAH (ENSMMMG00000018402) #36
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.e.a	ENSGT00940000162562.A.d	ENSGT00940000162562.A.c	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a.a #25	ENSGT00940000163570.d #27	ENSGT00940000163570.c #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35	ENSGT00940000161237 #36
Squirrel	MODERN SPECIES	74				BEND5 (ENSSTOG00000006997) #16	AGBL4 (ENSSTOG00000006972) #15	SPATA6 (ENSSTOG00000006944) #17	SLC5A9 (ENSSTOG00000006889) #18	ENSSTOG00000023325	ENSSTOG00000024899	ENSSTOG00000023168	TRABD2B (ENSSTOG00000028454) #19	FOXD2 (ENSSTOG00000027420)	FOXE3 (ENSSTOG00000033171)	CMPK1 (ENSSTOG00000007706)	STIL (ENSSTOG00000014333) #21	TAL1 (ENSSTOG00000008396) #22	PDZK1IP1 (ENSSTOG00000024038) #23	CYP4X1 (ENSSTOG00000013556)	ENSSTOG00000015913 #25	ENSSTOG00000028206 #25	ENSSTOG00000013550 #27	CYP4B1 (ENSSTOG00000001409) #24	EFCAB14 (ENSSTOG00000016250) #28	ENSSTOG00000030628 #29	ATPAF1 (ENSSTOG00000005415) #30	MOB3C (ENSSTOG00000005399) #31	ENSSTOG00000032933	KNCN (ENSSTOG00000026559) #34	DMBX1 (ENSSTOG00000011661) #35	FAAH (ENSSTOG00000011655) #36	ENSSTOG00000033959
Arctic ground squirrel	MODERN SPECIES	467					ENSUPAG00010015913 #17	SLC5A9 (ENSUPAG00010016240) #18	ENSUPAG00010016315	ENSUPAG00010016356	ENSUPAG00010016396	ENSUPAG00010016417	TRABD2B (ENSUPAG00010016431) #19	FOXD2 (ENSUPAG00010016448)	FOXE3 (ENSUPAG00010016452)	CMPK1 (ENSUPAG00010016469)	STIL (ENSUPAG00010016480) #21	TAL1 (ENSUPAG00010016605) #22	PDZK1IP1 (ENSUPAG00010016618) #23	CYP4X1 (ENSUPAG00010016640)
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.b.a ##25	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570 #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Kangaroo rat	MODERN SPECIES	352	ENSDORG00000010715	Tnni3k (ENSDORG00000010710)	Fpgt (ENSDORG00000028813)	ENSDORG00000023988	Faf1 (ENSDORG00000015487) #12	Dmrta2 (ENSDORG00000015486) #13	Elavl4 (ENSDORG00000012729) #14	Bend5 (ENSDORG00000005815) #16	Agbl4 (ENSDORG00000012728) #15	Spata6 (ENSDORG00000010310) #17	Slc5a9 (ENSDORG00000010547) #18	Trabd2b (ENSDORG00000023562) #19	Foxd2 (ENSDORG00000028126)	Cmpk1 (ENSDORG00000004576)	Stil (ENSDORG00000004571) #21	Tal1 (ENSDORG00000028266) #22	Pdzk1ip1 (ENSDORG00000004566) #23	Cyp4x1 (ENSDORG00000015306)	ENSDORG00000027207 ##25	ENSDORG00000008850 ##25	ENSDORG00000028283	ENSDORG00000024423 ##25	ENSDORG00000002019 #27	Cyp4b1 (ENSDORG00000002018) #24	Efcab14 (ENSDORG00000006628) #28	Tex38 (ENSDORG00000006627) #29	Atpaf1 (ENSDORG00000007212) #30	Mob3c (ENSDORG00000007210) #31	Mknk1 (ENSDORG00000007207) #32	Kncn (ENSDORG00000025447) #34	Dmbx1 (ENSDORG00000023987) #35
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.b.a ##25	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570 #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.b.a ##25	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570 #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	349												Foxd2 (ENSNGAG00000001638)	Foxe3 (ENSNGAG00000016532)	Cmpk1 (ENSNGAG00000024189)	Stil (ENSNGAG00000019917) #21	Tal1 (ENSNGAG00000021898) #22	Pdzk1ip1 (ENSNGAG00000020464) #23	Cyp4x1 (ENSNGAG00000019524)
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570.e.a #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.f #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000165990.a	ENSGT00940000165990.b	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570.e.a #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.f #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Mus	ANCESTRAL SPECIES	3	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000165990.a	ENSGT00940000165990.b	ENSGT00940000161273 #19	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000163570.e.a #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.f #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000165990.b.a	ENSGT00940000161273 #19	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570.e.a #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.f #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086
Ryukyu mouse	MODERN SPECIES	13	Dmrta2 (MGP_CAROLIEiJ_G0026288) #13	Elavl4 (MGP_CAROLIEiJ_G0026289) #14	Agbl4 (MGP_CAROLIEiJ_G0026290) #15	Bend5 (MGP_CAROLIEiJ_G0026291) #16	Spata6 (MGP_CAROLIEiJ_G0026292) #17	Slc5a9 (MGP_CAROLIEiJ_G0026293) #18	MGP_CAROLIEiJ_G0026294	Skint1 (MGP_CAROLIEiJ_G0026296)	MGP_CAROLIEiJ_G0026297	Skint10 (MGP_CAROLIEiJ_G0026298)	Trabd2b (MGP_CAROLIEiJ_G0026299) #19	Foxd2 (MGP_CAROLIEiJ_G0026300)	Foxe3 (MGP_CAROLIEiJ_G0026301)	Cmpk1 (MGP_CAROLIEiJ_G0026302)	Stil (MGP_CAROLIEiJ_G0026303) #21	Tal1 (MGP_CAROLIEiJ_G0026304) #22	MGP_CAROLIEiJ_G0026305 #23	Cyp4x1 (MGP_CAROLIEiJ_G0026306)	Cyp4a29 (MGP_CAROLIEiJ_G0026307) #25	MGP_CAROLIEiJ_G0026308 ##25	MGP_CAROLIEiJ_G0026309 ##25	MGP_CAROLIEiJ_G0026310 #27	Cyp4b1 (MGP_CAROLIEiJ_G0026312) #24	Efcab14 (MGP_CAROLIEiJ_G0026313) #28	Tex38 (MGP_CAROLIEiJ_G0026314) #29	Atpaf1 (MGP_CAROLIEiJ_G0026315) #30	Mob3c (MGP_CAROLIEiJ_G0026316) #31	Mknk1 (MGP_CAROLIEiJ_G0026317) #32	Kncn (MGP_CAROLIEiJ_G0026318) #34	Tmem275 (MGP_CAROLIEiJ_G0026319)	Dmbx1 (MGP_CAROLIEiJ_G0026320) #35
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000165990.b.a	ENSGT00940000161273 #19	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570.e.a #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.f.c.a #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000162886 #32	ENSGT00400000024146 #34	ENSGT00390000008086
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.a	ENSGT00940000164707.b	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b.b	ENSGT00940000165990.b.a	ENSGT00940000161273 #19	ENSGT00520000058517	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.a #25	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570.e.a #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.f.c.a #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00940000162886 #32	ENSGT00400000024146 #34
Steppe mouse	MODERN SPECIES	2738											Trabd2b (ENSMSIG00000032122) #19	Foxd2 (ENSMSIG00000032118)	Foxe3 (ENSMSIG00000032117)	Cmpk1 (ENSMSIG00000032116)	Stil (ENSMSIG00000032114) #21	Tal1 (ENSMSIG00000032112) #22	Pdzk1ip1 (ENSMSIG00000032111) #23	Cyp4x1 (ENSMSIG00000032110)
spretus	MODERN SPECIES	13	Bend5 (MGP_SPRETEiJ_G0027260) #16	Spata6 (MGP_SPRETEiJ_G0027261) #17	Slc5a9 (MGP_SPRETEiJ_G0027262) #18	Skint7 (MGP_SPRETEiJ_G0027263)	MGP_SPRETEiJ_G0027264	Skint1 (MGP_SPRETEiJ_G0027265)	Skint2 (MGP_SPRETEiJ_G0027266)	Skint10 (MGP_SPRETEiJ_G0027267)	MGP_SPRETEiJ_G0027269	Trabd2b (MGP_SPRETEiJ_G0027270) #19	MGP_SPRETEiJ_G0027271	Foxd2 (MGP_SPRETEiJ_G0027272)	Foxe3 (MGP_SPRETEiJ_G0027273)	Cmpk1 (MGP_SPRETEiJ_G0027274)	Stil (MGP_SPRETEiJ_G0027275) #21	Tal1 (MGP_SPRETEiJ_G0027276) #22	Pdzk1ip1 (MGP_SPRETEiJ_G0027277) #23	Cyp4x1 (MGP_SPRETEiJ_G0027278)	MGP_SPRETEiJ_G0027279 #25	MGP_SPRETEiJ_G0027280 ##25	MGP_SPRETEiJ_G0027281 ##25	MGP_SPRETEiJ_G0027282 #27	Cyp4a14 (MGP_SPRETEiJ_G0027283) ##25	Cyp4b1 (MGP_SPRETEiJ_G0027284) #24	Efcab14 (MGP_SPRETEiJ_G0027285) #28	Tex38 (MGP_SPRETEiJ_G0027286) #29	Atpaf1 (MGP_SPRETEiJ_G0027287) #30	Mob3c (MGP_SPRETEiJ_G0027288) #31	Mknk1 (MGP_SPRETEiJ_G0027289) #32	Kncn (MGP_SPRETEiJ_G0027290) #34	Tmem275 (MGP_SPRETEiJ_G0027291)
Mouse	MODERN SPECIES	13	Skint7 (ENSMUSG00000049214)	Skint1 (ENSMUSG00000089773)	Skint4 (ENSMUSG00000055960)	Skint3 (ENSMUSG00000070868)	Skint9 (ENSMUSG00000049972)	Skint2 (ENSMUSG00000034359)	Skint10 (ENSMUSG00000048766)	Skint6 (ENSMUSG00000087194)	Skint5 (ENSMUSG00000078598)	Skint11 (ENSMUSG00000057977)	Trabd2b (ENSMUSG00000070867) #19	Foxd2 (ENSMUSG00000055210)	Foxe3 (ENSMUSG00000044518)	Cmpk1 (ENSMUSG00000028719)	Stil (ENSMUSG00000028718) #21	Tal1 (ENSMUSG00000028717) #22	Pdzk1ip1 (ENSMUSG00000028716) #23	Cyp4x1 (ENSMUSG00000047155)	Cyp4a29 (ENSMUSG00000083138) #25	Cyp4a12a (ENSMUSG00000066071) ##25	Cyp4a12b (ENSMUSG00000078597) ##25	Cyp4a30b (ENSMUSG00000084346) #27	Cyp4a14 (ENSMUSG00000028715) ##25	Cyp4a10 (ENSMUSG00000066072) #27	Cyp4a31 (ENSMUSG00000028712) #27	Cyp4a32 (ENSMUSG00000063929) #27	Cyp4b1 (ENSMUSG00000028713) #24	Efcab14 (ENSMUSG00000034210) #28	Tex38 (ENSMUSG00000044556) #29	Atpaf1 (ENSMUSG00000028710) #30	Mob3c (ENSMUSG00000028709) #31
Shrew mouse	MODERN SPECIES	19	Agbl4 (MGP_PahariEiJ_G0028623) #15	Bend5 (MGP_PahariEiJ_G0028624) #16	Spata6 (MGP_PahariEiJ_G0028625) #17	Slc5a9 (MGP_PahariEiJ_G0028626) #18	MGP_PahariEiJ_G0028627	MGP_PahariEiJ_G0028628	Skint1 (MGP_PahariEiJ_G0028629)	MGP_PahariEiJ_G0028630	MGP_PahariEiJ_G0028631	Trabd2b (MGP_PahariEiJ_G0028632) #19	MGP_PahariEiJ_G0028633	Foxd2 (MGP_PahariEiJ_G0028634)	Foxe3 (MGP_PahariEiJ_G0028635)	Cmpk1 (MGP_PahariEiJ_G0028636)	Stil (MGP_PahariEiJ_G0028637) #21	Tal1 (MGP_PahariEiJ_G0028638) #22	MGP_PahariEiJ_G0028639 #23	Cyp4x1 (MGP_PahariEiJ_G0028640)	Cyp4a29 (MGP_PahariEiJ_G0028641) #25	Cyp4a14 (MGP_PahariEiJ_G0028642) ##25	MGP_PahariEiJ_G0028643 #27	Cyp4b1 (MGP_PahariEiJ_G0028644) #24	Efcab14 (MGP_PahariEiJ_G0028645) #28	Tex38 (MGP_PahariEiJ_G0028646) #29	Atpaf1 (MGP_PahariEiJ_G0028647) #30	Mob3c (MGP_PahariEiJ_G0028648) #31	Mknk1 (MGP_PahariEiJ_G0028649) #32	Kncn (MGP_PahariEiJ_G0028650) #34	Tmem275 (MGP_PahariEiJ_G0028651)	Dmbx1 (MGP_PahariEiJ_G0028652) #35	Faah (MGP_PahariEiJ_G0028653) #36
Rat	MODERN SPECIES	15	Slc5a9 (ENSRNOG00000042950) #18	Skint8 (ENSRNOG00000037680)	Skint1 (ENSRNOG00000043194)	Skint4 (ENSRNOG00000042047)	ENSRNOG00000063827	ENSRNOG00000067562	ENSRNOG00000063781	ENSRNOG00000068199	LOC100911818 (ENSRNOG00000067091)	Skint10 (ENSRNOG00000022988)	Trabd2b (ENSRNOG00000029141) #19	Foxd2 (ENSRNOG00000007759)	Foxe3 (ENSRNOG00000007770)	Cmpk1 (ENSRNOG00000007775)	Stil (ENSRNOG00000057760) #21	Tal1 (ENSRNOG00000025051) #22	Pdzk1ip1 (ENSRNOG00000008161) #23	Cyp4x1 (ENSRNOG00000043513)	Cyp4a8 (ENSRNOG00000008842) ##25	LOC120102953 (ENSRNOG00000066487) ##25	Cyp4a2 (ENSRNOG00000064139) ##25	Cyp4a3 (ENSRNOG00000066878) #27	Cyp4a1 (ENSRNOG00000009597) #27	Cyp4b1 (ENSRNOG00000055078) #24	Efcab14 (ENSRNOG00000010091) #28	Tex38 (ENSRNOG00000010162) #29	Atpaf1 (ENSRNOG00000010169) #30	Mob3c (ENSRNOG00000037620) #31	Mknk1 (ENSRNOG00000010381)	Kncn (ENSRNOG00000037618) #34	Tmem275 (ENSRNOG00000066278)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570.e.b #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.e.a #27	ENSGT00940000163570.f #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00400000024146 #34	ENSGT00390000008086
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.b #15	ENSGT00390000001724 #16	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000165990	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000155173.f.b.a ##25	ENSGT00940000163570.e.a #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.f #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Northern American deer mouse	MODERN SPECIES	11	Agbl4 (ENSPEMG00000023297) #15	Bend5 (ENSPEMG00000022292) #16	Spata6 (ENSPEMG00000022120) #17	Slc5a9 (ENSPEMG00000021770) #18	ENSPEMG00000021177	Skint1 (ENSPEMG00000011155)	ENSPEMG00000021558	ENSPEMG00000030740	ENSPEMG00000026129	ENSPEMG00000023162	ENSPEMG00000008143	Trabd2b (ENSPEMG00000021574) #19	Foxe3 (ENSPEMG00000025577)	Cmpk1 (ENSPEMG00000021852)	Stil (ENSPEMG00000023881) #21	Tal1 (ENSPEMG00000024420) #22	ENSPEMG00000022028 #23	Cyp4x1 (ENSPEMG00000021657)	ENSPEMG00000021445 ##25	Cyp4a14 (ENSPEMG00000021401) ##25	ENSPEMG00000023206 #27	Cyp4b1 (ENSPEMG00000022964) #24	Efcab14 (ENSPEMG00000021842) #28	Tex38 (ENSPEMG00000030507) #29	Atpaf1 (ENSPEMG00000028185) #30	Mob3c (ENSPEMG00000027471) #31	ENSPEMG00000022552	Kncn (ENSPEMG00000025397) #34	Tmem275 (ENSPEMG00000025552)	Dmbx1 (ENSPEMG00000023516) #35	Faah (ENSPEMG00000008896) #36
Prairie vole	MODERN SPECIES	1	Dmrta2 (ENSMOCG00000018451) #13	Elavl4 (ENSMOCG00000010309) #14	Agbl4 (ENSMOCG00000016733) #15	Bend5 (ENSMOCG00000003340) #16	ENSMOCG00000021709 #17	Slc5a9 (ENSMOCG00000022328) #18	ENSMOCG00000019561	ENSMOCG00000003588	ENSMOCG00000013586	ENSMOCG00000012467	Trabd2b (ENSMOCG00000002510) #19	Foxd2 (ENSMOCG00000002875)	Foxe3 (ENSMOCG00000008738)	Cmpk1 (ENSMOCG00000019310)	Stil (ENSMOCG00000001995) #21	Tal1 (ENSMOCG00000015608) #22	Pdzk1ip1 (ENSMOCG00000021926) #23	Cyp4x1 (ENSMOCG00000021415)	ENSMOCG00000020038 #27	ENSMOCG00000001637 ##25	ENSMOCG00000018767 #27	ENSMOCG00000017511 #27	ENSMOCG00000000985	Kcnab2 (ENSMOCG00000014027)	Chd5 (ENSMOCG00000011049)	Rpl22 (ENSMOCG00000013028)	Rnf207 (ENSMOCG00000018350)	Icmt (ENSMOCG00000018502)	Hes3 (ENSMOCG00000000573)	Gpr153 (ENSMOCG00000001689)	Acot7 (ENSMOCG00000007542)
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00390000001724 #16	ENSGT00940000155042.b #15	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000164707.d	ENSGT00940000162562.A.a.b	ENSGT00940000162562.A.a.a.b	ENSGT00940000162562.B	ENSGT00940000161273 #19	ENSGT00940000157140.b.a.b.a	ENSGT00940000163987	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00940000154660.b #23	ENSGT00940000160927	ENSGT00940000163570.e.b #27	ENSGT00940000155173.f.b.b ##25	ENSGT00940000163570.e.a #27	ENSGT00940000163570.f #27	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000155505.a #35
Golden Hamster	MODERN SPECIES	648	Bend5 (ENSMAUG00000007838) #16	Agbl4 (ENSMAUG00000020446) #15	ENSMAUG00000021230 #17	ENSMAUG00000008507 #17	Slc5a9 (ENSMAUG00000016902) #18	ENSMAUG00000020229	ENSMAUG00000008748	ENSMAUG00000004245	ENSMAUG00000013879	Trabd2b (ENSMAUG00000006510) #19	ENSMAUG00000009858	Foxd2 (ENSMAUG00000010964)	Foxe3 (ENSMAUG00000010093)	ENSMAUG00000019205 #20	Stil (ENSMAUG00000018720) #21	Tal1 (ENSMAUG00000001565) #22	Pdzk1ip1 (ENSMAUG00000019882) #23	Cyp4x1 (ENSMAUG00000011941)	ENSMAUG00000021832 #27	Cyp4a30b (ENSMAUG00000010739) #27	ENSMAUG00000021312 #27	ENSMAUG00000011003	ENSMAUG00000018793 #27	Cyp4b1 (ENSMAUG00000011868) #24	Efcab14 (ENSMAUG00000019992) #28	Tex38 (ENSMAUG00000013809) #29	Atpaf1 (ENSMAUG00000008609) #30	Mob3c (ENSMAUG00000003368) #31	ENSMAUG00000001517	Kncn (ENSMAUG00000017362) #34	Dmbx1 (ENSMAUG00000013192) #35
Chinese hamster chok1gshd	MODERN SPECIES	111	Elavl4 (ENSCGRG00001020348) #14	Bend5 (ENSCGRG00001018629) #16	Agbl4 (ENSCGRG00001017075) #15	Spata6 (ENSCGRG00001001168) #17	Slc5a9 (ENSCGRG00001019511) #18	ENSCGRG00001023213	ENSCGRG00001021660	ENSCGRG00001021187	ENSCGRG00001018354	Trabd2b (ENSCGRG00001016130) #19	ENSCGRG00001022727	Foxd2 (ENSCGRG00001010484)	Foxe3 (ENSCGRG00001005301)	Cmpk1 (ENSCGRG00001016283)	Stil (ENSCGRG00001012804) #21	Tal1 (ENSCGRG00001023671) #22	Pdzk1ip1 (ENSCGRG00001022750) #23	Cyp4x1 (ENSCGRG00001021846)	ENSCGRG00001019487 #27	ENSCGRG00001009269 ##25	ENSCGRG00001023643 #27	ENSCGRG00001018395 #27	ENSCGRG00001013423 #27	Cyp4b1 (ENSCGRG00001018150) #24	Efcab14 (ENSCGRG00001018066) #28	Tex38 (ENSCGRG00001013204) #29	Atpaf1 (ENSCGRG00001012405) #30	Mob3c (ENSCGRG00001011170) #31	ENSCGRG00001007744	Kncn (ENSCGRG00001024146) #34	Tmem275 (ENSCGRG00001003497)
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00950000182917.a.b.a #8	ENSGT00730000110988	ENSGT00390000000797 #10	ENSGT00940000160194 #11	ENSGT00940000154831 #12	ENSGT00940000161649 #13	ENSGT00940000157399 #14	ENSGT00940000155042.a.b ##15	ENSGT00390000001724 #16	ENSGT00940000155042.b #15	ENSGT00530000063821.b.a #17	ENSGT00940000157546 #18	ENSGT00940000161273 #19	ENSGT00940000160589	ENSGT00390000007310 #21	ENSGT00940000159889 #22	ENSGT00980000201734	ENSGT00940000160927	ENSGT00940000155173 #25	ENSGT00940000161441 #24	ENSGT00390000011196 #28	ENSGT00390000016446 #29	ENSGT00390000012765 #30	ENSGT01050000244898.a.a.b #31	ENSGT00940000154587.a.a	ENSGT00400000024146 #34	ENSGT00390000008086	ENSGT00940000162886 #32	ENSGT00940000155505.a #35	ENSGT00940000161237 #36	ENSGT00940000153665.b.a.b #37
Pika	MODERN SPECIES	4141															STIL (ENSOPRG00000004039) #21	TAL1 (ENSOPRG00000004033) #22	ENSOPRG00000004006	CYP4X1 (ENSOPRG00000003967)
Rabbit	MODERN SPECIES	4	ENSOCUG00000029778	ENSOCUG00000031084	ENSOCUG00000035051	ENSOCUG00000023561	ENSOCUG00000011146	ENSOCUG00000033406 ##15	BEND5 (ENSOCUG00000006471) #16	ENSOCUG00000006460 #15	SPATA6 (ENSOCUG00000008704) #17	ENSOCUG00000021113	SLC5A9 (ENSOCUG00000007119) #18	ENSOCUG00000031714	TRABD2B (ENSOCUG00000035774) #19	CMPK1 (ENSOCUG00000012424)	STIL (ENSOCUG00000013586) #21	TAL1 (ENSOCUG00000017248) #22	ENSOCUG00000038723	ENSOCUG00000030697	CYP4X1 (ENSOCUG00000008267)	ENSOCUG00000034966	ENSOCUG00000034574	CYP4A5 (ENSOCUG00000025702) #25	CYP4B1 (ENSOCUG00000011201) #24	ENSOCUG00000012284	EFCAB14 (ENSOCUG00000006616) #28	TEX38 (ENSOCUG00000006612) #29	ATPAF1 (ENSOCUG00000009230) #30	MOB3C (ENSOCUG00000021111) #31	ENSOCUG00000003495	KNCN (ENSOCUG00000005134) #34	TMEM275 (ENSOCUG00000030363)