Clupeocephala	ANCESTRAL SPECIES	301														ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00930000151043	ENSGT00390000004791	ENSGT00390000002738.b	ENSGT00940000160168.b.b
Euteleosteomorpha	ANCESTRAL SPECIES	70	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B #26	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00940000155705.a.a ##14	ENSGT00950000183190.a.a.a.a.a.a ##16	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a
Acanthomorphata	ANCESTRAL SPECIES	91		ENSGT00530000063498.B #26	ENSGT00730000111085.A #25	ENSGT00950000182946.lb.b #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00940000155705.a.a ##14	ENSGT00950000183190.a.a.a.a.a.a ##16	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00940000160489	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800
Euacanthomorphacea	ANCESTRAL SPECIES	59				ENSGT00530000063498.B #26	ENSGT00730000111085.A #25	ENSGT00950000182946.lb.b #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00940000160489	ENSGT01050000244879.a.a.a	ENSGT00940000155332.A	ENSGT00940000158800
Percomorphaceae	ANCESTRAL SPECIES	52	ENSGT00940000162747	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000180612	ENSGT00940000159127	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.a.b #17	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00940000156988	ENSGT00940000180612	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.a.b #17	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT01030000237075	ENSGT00940000155136 #32	ENSGT01030000234837 #31
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000156988	ENSGT00940000180612	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.a.b #17	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT00940000155136 #32	ENSGT01030000234837 #31	ENSGT00940000166794
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT00940000155136 #32	ENSGT01030000234837 #31	ENSGT00940000166794
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000159037 #29	ENSGT00950000183171.A.b.a.b #30	ENSGT00940000166794	ENSGT01030000234837 #31	ENSGT00940000155136 #32	ENSGT00940000157668 #33	ENSGT00950000182916.a.b.a.a.a.a.e.a #35
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000013834 #7	ENSBSLG00000013818 #8	ENSBSLG00000013811 #9	pomgnt1 (ENSBSLG00000013715) #10	TSPAN1 (ENSBSLG00000013694) #11	ENSBSLG00000013679 #12	PIK3R3 (ENSBSLG00000013563) #13	ENSBSLG00000013282 #14	ENSBSLG00000013235 #15	ENSBSLG00000013139 #16	ENSBSLG00000013051 #17	prrx1b (ENSBSLG00000012451) #18	gorab (ENSBSLG00000012442) #19	ENSBSLG00000012437 #20	ntmt2 (ENSBSLG00000012402) #21	kifap3a (ENSBSLG00000011776) #22	niban1a (ENSBSLG00000011377) #23	TRMT1L (ENSBSLG00000011357) #24	prpf38a (ENSBSLG00000011340) #25	orc1 (ENSBSLG00000011328) #26	ENSBSLG00000011312 #27	nrd1b (ENSBSLG00000009863) #28	sgta (ENSBSLG00000009554) #29	thop1 (ENSBSLG00000008008) #30	ENSBSLG00000007757 #31	PATJ (ENSBSLG00000007730) #32	tm2d1 (ENSBSLG00000007293) #33	ENSBSLG00000007289 #34	nfia (ENSBSLG00000006813) #35	ENSBSLG00000015664 #36	SLC39A3 (ENSBSLG00000015655) #37
Climbing perch	MODERN SPECIES	17	RHPN1 (ENSATEG00000003810)	ENSATEG00000003823	ENSATEG00000003849	ENSATEG00000028259 #7	ENSATEG00000003890	ENSATEG00000030160	ENSATEG00000003903 #9	POMGNT1 (ENSATEG00000003917) #10	ENSATEG00000004022 #11	PIK3R3 (ENSATEG00000004078) #13	ENSATEG00000004325 #16	ENSATEG00000004346 #17	prrx1b (ENSATEG00000004399) #18	gorab (ENSATEG00000004422) #19	ntmt2 (ENSATEG00000029904) #21	kifap3a (ENSATEG00000004457) #22	niban1a (ENSATEG00000004540) #23	ENSATEG00000004573 #24	ENSATEG00000004608 #25	ENSATEG00000004619 #26	ENSATEG00000013279 #27	ENSATEG00000004658 #28	ENSATEG00000004678	ENSATEG00000004698	ENSATEG00000004709 #29	ENSATEG00000004759 #30	ENSATEG00000004827	ENSATEG00000026072 #31	PATJ (ENSATEG00000004917) #32	tm2d1 (ENSATEG00000004946) #33	nfia (ENSATEG00000004979) #35
Zig-zag eel	MODERN SPECIES	18	RHPN1 (ENSMAMG00000014859)	ENSMAMG00000014890	ENSMAMG00000014948	ENSMAMG00000015400 #7	ENSMAMG00000014977 #9	pomgnt1 (ENSMAMG00000014990) #10	TSPAN1 (ENSMAMG00000015037) #11	PIK3R3 (ENSMAMG00000015060) #13	MAST2 (ENSMAMG00000015099) #14	ENSMAMG00000015160 #17	ENSMAMG00000015165 #16	ENSMAMG00000015173 #17	prrx1b (ENSMAMG00000015198) #18	gorab (ENSMAMG00000024412) #19	ntmt2 (ENSMAMG00000015231) #21	kifap3a (ENSMAMG00000015251) #22	niban1a (ENSMAMG00000015296) #23	ENSMAMG00000015305 #24	ENSMAMG00000027044 #7	ENSMAMG00000026330 ##9	ENSMAMG00000015431 #25	ENSMAMG00000015463 #26	ENSMAMG00000015518	ENSMAMG00000015485	ENSMAMG00000015528	reep6 (ENSMAMG00000015545)	zgc:113223 (ENSMAMG00000015567)	ENSMAMG00000015587	SLC39A3 (ENSMAMG00000015606) #37	ENSMAMG00000015621 #29	THOP1 (ENSMAMG00000015663) #30
Carangaria	ANCESTRAL SPECIES	7	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000180612	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT00940000155136 #32	ENSGT01030000234837 #31	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b #30
Carangaria_A	ANCESTRAL SPECIES	73										ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT00940000155136.mc #32	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b #30	ENSGT00940000159037 #29
Seriola	ANCESTRAL SPECIES		ENSGT00940000159036	ENSGT00950000182930.A.b.k.a	ENSGT00950000182930.A.b.k.b	ENSGT00510000046975.b	ENSGT01090000260029.a.a.b.a.b	ENSGT00950000183014.f.b.b.a.a	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a	ENSGT00940000154573	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00940000155265.b.b.b	ENSGT01030000234528.B.b.b.bb.a	ENSGT00940000157362.d	ENSGT00940000166873	ENSGT00940000164912	ENSGT00940000161068	ENSGT00940000162747	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00940000155265.b.b.a	ENSGT00940000164676
Greater amberjack	MODERN SPECIES	73	ENSSDUG00000021572	ENSSDUG00000021580	pycr3 (ENSSDUG00000021591)	bmb (ENSSDUG00000021603)	GFUS (ENSSDUG00000021654)	GFUS (ENSSDUG00000021667)	SERPINB1 (ENSSDUG00000021682)	ENSSDUG00000021696	ENSSDUG00000021705	ENSSDUG00000021712 #16	ENSSDUG00000021725 #16	ENSSDUG00000021730	prrx1b (ENSSDUG00000021734) #18	gorab (ENSSDUG00000021741) #19	ntmt2 (ENSSDUG00000021747) #21	kifap3a (ENSSDUG00000021766) #22	niban1a (ENSSDUG00000021794) #23	TRMT1L (ENSSDUG00000021807) #24	ENSSDUG00000021831	ENSSDUG00000021837	ADCYAP1R1 (ENSSDUG00000021845)	ENSSDUG00000021851	ENSSDUG00000021862	ZC3H3 (ENSSDUG00000021871)	mafaa (ENSSDUG00000021887)	atpaf1 (ENSSDUG00000021892)	RHPN1 (ENSSDUG00000021905)	TUT4 (ENSSDUG00000021923)	ENSSDUG00000021936	ENSSDUG00000021945	gpx7 (ENSSDUG00000021949)
Yellowtail amberjack	MODERN SPECIES	3176	ENSSLDG00000017469	ENSSLDG00000017453	NOS1AP (ENSSLDG00000017424)	ENSSLDG00000017410	ENSSLDG00000017392	pycr3 (ENSSLDG00000017378)	bmb (ENSSLDG00000017363)	SERPINB1 (ENSSLDG00000017322)	GFUS (ENSSLDG00000016998)	SERPINB1 (ENSSLDG00000016912)	ENSSLDG00000016881 #16	ENSSLDG00000016872	prrx1b (ENSSLDG00000016851) #18	gorab (ENSSLDG00000016829) #19	ntmt2 (ENSSLDG00000016809) #21	kifap3a (ENSSLDG00000016743) #22	niban1a (ENSSLDG00000016719) #23	TRMT1L (ENSSLDG00000016579) #24	ENSSLDG00000016388	ENSSLDG00000016313	ENSSLDG00000016289	ADCYAP1R1 (ENSSLDG00000016253)	ENSSLDG00000016216	ENSSLDG00000016189	ZC3H3 (ENSSLDG00000016166)	mafaa (ENSSLDG00000016154)	atpaf1 (ENSSLDG00000016141)	RHPN1 (ENSSLDG00000016111)	TUT4 (ENSSLDG00000016071)	gpx7 (ENSSLDG00000016054)	ENSSLDG00000016038
Barramundi perch	MODERN SPECIES	12										MAST2 (ENSLCAG00010009380) #14	ENSLCAG00010009351 #16	ENSLCAG00010009348 #17	prrx1b (ENSLCAG00010009338) #18	gorab (ENSLCAG00010009330) #19	ntmt2 (ENSLCAG00010009328) #21	kifap3a (ENSLCAG00010009279) #22	niban1a (ENSLCAG00010009219) #23	TRMT1L (ENSLCAG00010009200) #24	ENSLCAG00010009197 ##9	prpf38a (ENSLCAG00010009186) #25	ENSLCAG00010009176	ENSLCAG00010009173	ENSLCAG00010009169	ENSLCAG00010009157	ENSLCAG00010009145	nrd1b (ENSLCAG00010008718) #28	ENSLCAG00010008609 #27	ENSLCAG00010008606	orc1 (ENSLCAG00010008509) #26	ENSLCAG00010008482	ENSLCAG00010008469
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000180612	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT00940000155136 #32	ENSGT00940000166794	ENSGT00940000177900	ENSGT00950000183171.A.b.a.b #30
Turbot	MODERN SPECIES	3	ENSSMAG00000034624	RHPN1 (ENSSMAG00000016240)	ENSSMAG00000016072	ENSSMAG00000026133	ENSSMAG00000016012 #7	ENSSMAG00000015980 #7	ENSSMAG00000015944 #9	TSPAN1 (ENSSMAG00000015857) #11	ENSSMAG00000015873 #10	ENSSMAG00000015713 #14	ENSSMAG00000015681 #16	ENSSMAG00000022440	prrx1b (ENSSMAG00000015646) #18	gorab (ENSSMAG00000015639) #19	ntmt2 (ENSSMAG00000015625) #21	kifap3a (ENSSMAG00000015597) #22	niban1a (ENSSMAG00000015548) #23	ENSSMAG00000015425 #24	ENSSMAG00000025993 ##9	ENSSMAG00000036494 ##9	ENSSMAG00000034311 ##9	ENSSMAG00000024407 ##9	ENSSMAG00000015379 #25	ENSSMAG00000015352 #26	ENSSMAG00000037635	ENSSMAG00000015337 #27	ENSSMAG00000015223 #28	ENSSMAG00000015125 ##35	ENSSMAG00000022039	ENSSMAG00000037770 ##20	ENSSMAG00000014281
Tongue sole	MODERN SPECIES	11	fbxl5 (ENSCSEG00000000935)	CC2D2A (ENSCSEG00000000953)	C1QTNF7 (ENSCSEG00000001054)	ENSCSEG00000001059	ENSCSEG00000001066 #9	pomgnt1 (ENSCSEG00000001071) #10	TSPAN1 (ENSCSEG00000001092) #11	ENSCSEG00000001097	PIK3R3 (ENSCSEG00000001100) #13	MAST2 (ENSCSEG00000001119) #14	ENSCSEG00000001139 #16	ENSCSEG00000001183	prrx1b (ENSCSEG00000001187) #18	gorab (ENSCSEG00000001201) #19	ntmt2 (ENSCSEG00000001207) #21	kifap3a (ENSCSEG00000001211) #22	niban1a (ENSCSEG00000001233) #23	TRMT1L (ENSCSEG00000001248) #24	ENSCSEG00000001267 ##9	prpf38a (ENSCSEG00000001269) #25	orc1 (ENSCSEG00000001275) #26	ENSCSEG00000001281	ENSCSEG00000001287	RAB3B (ENSCSEG00000001290) #27	nrd1b (ENSCSEG00000001310) #28	ttll9 (ENSCSEG00000001500)	SAMD9 (ENSCSEG00000001506)	frem1b (ENSCSEG00000001512)	nfia (ENSCSEG00000001541) #35	tm2d1 (ENSCSEG00000001546) #33	PATJ (ENSCSEG00000001551) #32
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT01030000237075	ENSGT00940000155136 #32	ENSGT01030000234837 #31
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT01030000237075	ENSGT00940000155136 #32	ENSGT01030000234837 #31
Ballan wrasse	MODERN SPECIES	595														gorab (ENSLBEG00000003750) #19	ntmt2 (ENSLBEG00000003726) #21	kifap3a (ENSLBEG00000003653) #22	niban1a (ENSLBEG00000003555) #23	TRMT1L (ENSLBEG00000003487) #24	ENSLBEG00000003466 ##9	ENSLBEG00000003450 ##9	orc1 (ENSLBEG00000003383) #26	ENSLBEG00000003362 ##9	ENSLBEG00000003351 ##9
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000177981	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT01030000237075	ENSGT00940000155136 #32	ENSGT01030000234837 #31
Perciformes	ANCESTRAL SPECIES	8	ENSGT00940000162747	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT01030000237075	ENSGT00940000155136 #32	ENSGT01030000234837 #31
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00940000161068	ENSGT00940000162747	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000153421.a.a.a.b	ENSGT00950000183039.B.b.c	ENSGT00950000183111.b.a.b	ENSGT00940000157769	ENSGT00940000156539	ENSGT00390000002505	ENSGT00940000161304.a.a	ENSGT00940000156073.c.b
Stickleback	MODERN SPECIES	8	mafaa (ENSGACG00000005347)	atpaf1 (ENSGACG00000005332)	RHPN1 (ENSGACG00000005320)	ENSGACG00000005282	gpx7 (ENSGACG00000005246)	ENSGACG00000005243 #9	pomgnt1 (ENSGACG00000005215) #10	TSPAN1 (ENSGACG00000005195) #11	PIK3R3 (ENSGACG00000005180) #13	ENSGACG00000005179	MAST2 (ENSGACG00000005151) #14	ENSGACG00000005129 #17	prrx1b (ENSGACG00000005111) #18	gorab (ENSGACG00000005104) #19	ntmt2 (ENSGACG00000005100) #21	kifap3a (ENSGACG00000005088) #22	niban1a (ENSGACG00000005076) #23	TRMT1L (ENSGACG00000005050) #24	ENSGACG00000005049 ##9	MYLK4 (ENSGACG00000005039)	ENSGACG00000005035	gmds (ENSGACG00000005020)	foxc1b (ENSGACG00000005016)	ENSGACG00000005011	foxq1b (ENSGACG00000005009)	exoc2 (ENSGACG00000004977)	ENSGACG00000004966	ENSGACG00000004962	BPHL (ENSGACG00000004957)	ENSGACG00000004955	SLC22A23 (ENSGACG00000004947)
Lumpfish	MODERN SPECIES	19	RHPN1 (ENSCLMG00005003769)	TUT4 (ENSCLMG00005003783)	gpx7 (ENSCLMG00005005048)	ENSCLMG00005005049 #9	pomgnt1 (ENSCLMG00005005057) #10	TSPAN1 (ENSCLMG00005005093) #11	PIK3R3 (ENSCLMG00005005105) #13	ENSCLMG00005006028	MAST2 (ENSCLMG00005006053) #14	ENSCLMG00005008597	ENSCLMG00005008599 #17	ENSCLMG00005008601 #17	prrx1b (ENSCLMG00005008603) #18	ENSCLMG00005008604 #19	ntmt2 (ENSCLMG00005008605) #21	kifap3a (ENSCLMG00005008607) #22	niban1a (ENSCLMG00005008686) #23	TRMT1L (ENSCLMG00005008807) #24	ENSCLMG00005008813 ##9	prpf38a (ENSCLMG00005008823) #25	orc1 (ENSCLMG00005008836) #26	ENSCLMG00005009096 #27	nrd1b (ENSCLMG00005009102) #28	ENSCLMG00005010500	ENSCLMG00005010502	ENSCLMG00005010503	mep1ba (ENSCLMG00005010504)	uhmk1 (ENSCLMG00005010513)	akr1a1b (ENSCLMG00005010518)	ENSCLMG00005010529	SHISAL2A (ENSCLMG00005010532)
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000162747	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00940000177981	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##35	ENSGT00940000157668 #33	ENSGT00940000155136 #32	ENSGT01030000234837 #31	ENSGT00940000154660.b
Channel bull blenny	MODERN SPECIES	18	atpaf1 (ENSCGOG00000001729)	RHPN1 (ENSCGOG00000001518)	TUT4 (ENSCGOG00000001260)	gpx7 (ENSCGOG00000001250)	ENSCGOG00000001245 #9	TSPAN1 (ENSCGOG00000001243) #11	pomgnt1 (ENSCGOG00000001217) #10	ENSCGOG00000001155 #13	MAST2 (ENSCGOG00000000759) #14	ENSCGOG00000000631	ENSCGOG00000000618 #16	ENSCGOG00000000611 #17	prrx1b (ENSCGOG00000000597) #18	gorab (ENSCGOG00000000591) #19	ntmt2 (ENSCGOG00000000587) #21	kifap3a (ENSCGOG00000000499) #22	niban1a (ENSCGOG00000000421) #23	TRMT1L (ENSCGOG00000000402) #24	prpf38a (ENSCGOG00000000397) #25	ENSCGOG00000000391 ##9	ENSCGOG00000000390 ##9	ENSCGOG00000000387	ENSCGOG00000000386 ##9	ENSCGOG00000000385 ##9	ENSCGOG00000000381 ##9	ENSCGOG00000000376 ##9	ENSCGOG00000000369 ##9	ENSCGOG00000000364 ##9	prpf38a (ENSCGOG00000000361) #25	ENSCGOG00000000355 ##9	ENSCGOG00000000352 ##9
Pike perch	MODERN SPECIES	203										MAST2 (ENSSLUG00000019061) #14	ENSSLUG00000018904 #16	ENSSLUG00000018882 #17	prrx1b (ENSSLUG00000018855) #18	gorab (ENSSLUG00000018848) #19	ntmt2 (ENSSLUG00000018843) #21	kifap3a (ENSSLUG00000016487) #22	niban1a (ENSSLUG00000016372) #23	TRMT1L (ENSSLUG00000016365) #24	zgc:103559 (ENSSLUG00000016348)	ENSSLUG00000016342 ##9	ENSSLUG00000016340 ##9	ENSSLUG00000016339 ##9	ENSSLUG00000016336 ##9	ENSSLUG00000016334 ##9	ENSSLUG00000016332 ##9	ENSSLUG00000016330 ##9	ENSSLUG00000016328 ##9	ENSSLUG00000016326 ##9
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.b ##35	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT00940000155136 #32	ENSGT01030000234837 #31	ENSGT00940000154660.b
Gilthead seabream	MODERN SPECIES	2	ENSSAUG00010012544 #27	orc1 (ENSSAUG00010012555) #26	ENSSAUG00010012577 #27	prpf38a (ENSSAUG00010012580) #25	ENSSAUG00010012588 ##9	ENSSAUG00010012593 ##9	ENSSAUG00010012596 ##9	pomgnt1 (ENSSAUG00010012601) #10	TSPAN1 (ENSSAUG00010012652) #11	PIK3R3 (ENSSAUG00010012678) #13	MAST2 (ENSSAUG00010013481) #14	ENSSAUG00010007557 #17	prrx1b (ENSSAUG00010007560) #18	gorab (ENSSAUG00010007575) #19	ntmt2 (ENSSAUG00010007576) #21	kifap3a (ENSSAUG00010007590) #22	niban1a (ENSSAUG00010007614) #23	TRMT1L (ENSSAUG00010007735) #24	ENSSAUG00010007843 ##9	ENSSAUG00010007846 #9	ENSSAUG00010007848	TUT4 (ENSSAUG00010007861)	gpx7 (ENSSAUG00010007871)	TUT4 (ENSSAUG00010007879)	ENSSAUG00010007893	ENSSAUG00010007898	ttr (ENSSAUG00010007903)	b4galt6 (ENSSAUG00010007906)	rfc4 (ENSSAUG00010007946)	ENSSAUG00010007959	b3gnt5a (ENSSAUG00010007972)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00390000012765	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000159127	ENSGT00730000114327 #7	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00940000159943 #27	ENSGT00940000155026.d #28	ENSGT00390000013973.A.a.c.b.b	ENSGT00940000165098	ENSGT00950000182916.a.b.a.a.a.a.e.a #35	ENSGT00940000157668 #33	ENSGT00940000155136 #32	ENSGT01030000234837 #31	ENSGT00940000166794	ENSGT00950000183171.A.b.a.b #30
European seabass	MODERN SPECIES	17	RHPN1 (ENSDLAG00005010260)	ENSDLAG00005010201	ENSDLAG00005010194	ENSDLAG00005031434 #7	ENSDLAG00005010180 #9	pomgnt1 (ENSDLAG00005010107) #10	TSPAN1 (ENSDLAG00005010091) #11	PIK3R3 (ENSDLAG00005009702) #13	MAST2 (ENSDLAG00005007444) #14	ENSDLAG00005007220 #16	ENSDLAG00005030898 #17	prrx1b (ENSDLAG00005026578) #18	ENSDLAG00005029644	gorab (ENSDLAG00005034105) #19	ntmt2 (ENSDLAG00005007122) #21	kifap3a (ENSDLAG00005006960) #22	niban1a (ENSDLAG00005030465) #23	ENSDLAG00005006371 #24	ENSDLAG00005006336 ##9	ENSDLAG00005021756 ##9	ENSDLAG00005027689 ##9	ENSDLAG00005031368 ##9	ENSDLAG00005006324 ##9	ENSDLAG00005021292	ENSDLAG00005030797 #25	ARHGAP8 (ENSDLAG00005026790)	ENSDLAG00005028210	ENSDLAG00005028448	KIAA0930 (ENSDLAG00005005061)	fbxo7 (ENSDLAG00005005176)	ENSDLAG00005028562
Large yellow croaker	MODERN SPECIES	489	si:ch211-262h13.5 (ENSLCRG00005007588)	ENSLCRG00005006443	gpc1a (ENSLCRG00005006437)	ENSLCRG00005006435	ENSLCRG00005006433 #9	pomgnt1 (ENSLCRG00005006376) #10	TSPAN1 (ENSLCRG00005006351) #11	PIK3R3 (ENSLCRG00005006158) #13	MAST2 (ENSLCRG00005006105) #14	ENSLCRG00005006101 #17	ENSLCRG00005006100	ENSLCRG00005006099 #17	prrx1b (ENSLCRG00005006097) #18	gorab (ENSLCRG00005006096) #19	ntmt2 (ENSLCRG00005006095) #21	kifap3a (ENSLCRG00005005844) #22	niban1a (ENSLCRG00005005824) #23	TRMT1L (ENSLCRG00005005814) #24	ENSLCRG00005005813 ##9	ENSLCRG00005005811 ##9	prpf38a (ENSLCRG00005005809) #25	ENSLCRG00005005808 ##9	orc1 (ENSLCRG00005005729) #26	ENSLCRG00005005722 #27	nrd1b (ENSLCRG00005001392) #28	ENSLCRG00005001356	frem1b (ENSLCRG00005000876)	nfia (ENSLCRG00005011783) #35	tm2d1 (ENSLCRG00005011776) #33	PATJ (ENSLCRG00005011765) #32	ENSLCRG00005011753 #31
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00940000153837.a.a	ENSGT00940000156988	ENSGT00940000180612	ENSGT00940000159127	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.a.b #17	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000156988	ENSGT00940000180612	ENSGT00940000159127	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT01050000245196	ENSGT00950000183190.a.a.a.b #17	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00530000063404.b	ENSGT00940000155899.e.a	ENSGT00940000156511.b.db	ENSGT00940000159571	ENSGT00390000010568	ENSGT01050000244887.A.a.b	ENSGT00940000159554	ENSGT00940000157967	ENSGT00390000007310	ENSGT01050000244924.a.a.b.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	7							ENSGT00950000182946.lb.b.g.w ##9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g.x ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00530000063404.b	ENSGT00940000155899.e.a	ENSGT00940000169015	ENSGT00940000159571	ENSGT00390000010568	ENSGT01050000244887.A.a.b	ENSGT00940000159554	ENSGT00940000157967	ENSGT00390000007310	ENSGT01050000244924.a.a.b.a.a
Cyprinodontoidei	ANCESTRAL SPECIES	43	ENSGT00950000183171.A.b.a.b #30	ENSGT00940000159037 #29	ENSGT00940000160231 #37	ENSGT00940000166036	ENSGT00940000165051	ENSGT00940000157046.D.d.d.a.a.b.b.b	ENSGT00950000182946.lb.b.g.w.b ##9	ENSGT00950000182946.lb.b.g.w.a ##9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT01090000260029.a.b.a	ENSGT00990000203619.A.b.b.b.b.a.a.g	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g.x ##9	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT00530000063404.b	ENSGT00940000155899.e.a	ENSGT00940000169015	ENSGT00940000159571	ENSGT00390000010568	ENSGT01050000244887.A.a.b	ENSGT00940000159554	ENSGT00940000157967	ENSGT00390000007310	ENSGT01050000244924.a.a.b.a.a
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.b	ENSGT01100000263489.a.a.b.b.f.a.a.d	ENSGT00950000182946.lb.b.g.w.b ##9	ENSGT00950000182946.lb.b.g.w.a ##9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000155705.b #14	ENSGT00940000155705.a.a ##14	ENSGT00950000183190.a.a.a.a.a.a ##16	ENSGT01090000260029.a.b.a	ENSGT00990000203619.A.b.b.b.b.a.a.g	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g.x ##9	ENSGT00730000111085.A #25	ENSGT00950000183052.b.c.b.b.b.a.b.a	ENSGT00530000063498.B #26	ENSGT00530000063404.b	ENSGT00940000155899.e.a	ENSGT00940000156511.b.db	ENSGT00940000159571	ENSGT00390000010568	ENSGT01050000244887.A.a.b	ENSGT00940000159554	ENSGT00940000157967	ENSGT00390000007310
Poecilia	ANCESTRAL SPECIES	1	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.b	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.b	ENSGT01100000263489.a.a.b.b.f.a.a.d	ENSGT00950000182946.lb.b.g.w.b ##9	ENSGT00950000182946.lb.b.g.w.a.b ##9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000155705.b #14	ENSGT00940000155705.a.a ##14	ENSGT00950000183190.a.a.a.a.a.a ##16	ENSGT01090000260029.a.b.a	ENSGT00990000203619.A.b.b.b.b.a.a.g	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g.x ##9	ENSGT00730000111085.A #25	ENSGT00940000157046.D.d.d.a.a.b.a.a.a.a	ENSGT01030000235075.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.b.b.b.b.b	ENSGT00950000182774.b.a.b.a.b.a.b.c.b.a.b.b	ENSGT01100000263489.a.a.b.b.f.a.b.b.d.a.a.a.a.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.b.b.b.b.b.b.a	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.b	ENSGT00950000183052.b.c.b.b.b.a.b.a	ENSGT00530000063498.B #26	ENSGT00530000063404.b	ENSGT00940000155899.e.a
NAME_6	ANCESTRAL SPECIES	299							ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000155705.b #14	ENSGT00940000155705.a.a ##14	ENSGT00950000183190.a.a.a.a.a.a ##16	ENSGT00990000203619.A.b.b.b.b.a.a.g	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g.x ##9	ENSGT00730000111085.A #25	ENSGT01100000263483.E.a.c.b.a.b
Amazon molly	MODERN SPECIES	490						pomgnt1 (ENSPFOG00000001385) #10	TSPAN1 (ENSPFOG00000001818) #11	PIK3R3 (ENSPFOG00000001877) ##13	MAST2 (ENSPFOG00000002082) #14	ENSPFOG00000021901 ##14	ENSPFOG00000002601 ##16	ENSPFOG00000022245	prrx1b (ENSPFOG00000003097) #18	gorab (ENSPFOG00000003166) #19	ntmt2 (ENSPFOG00000003229) #21	kifap3a (ENSPFOG00000003275) #22	niban1a (ENSPFOG00000003690) #23	TRMT1L (ENSPFOG00000003872) #24	ENSPFOG00000004243 ##9	prpf38a (ENSPFOG00000004248) #25	ENSPFOG00000004363	ENSPFOG00000020390	ENSPFOG00000024048	ENSPFOG00000024787	ENSPFOG00000022026	ENSPFOG00000022677	ENSPFOG00000004377	ENSPFOG00000004386	ENSPFOG00000022934	ENSPFOG00000022201	ENSPFOG00000022055
Sailfin molly	MODERN SPECIES	541										ENSPLAG00000010513 #16	ENSPLAG00000010510	ENSPLAG00000010497	prrx1b (ENSPLAG00000010488) #18	gorab (ENSPLAG00000010475) #19	ntmt2 (ENSPLAG00000010468) #21	kifap3a (ENSPLAG00000010447) #22	niban1a (ENSPLAG00000010397) #23	TRMT1L (ENSPLAG00000010387) #24	ENSPLAG00000010339 ##9	prpf38a (ENSPLAG00000010328) #25	ENSPLAG00000010288	ENSPLAG00000010276	ENSPLAG00000010267	ENSPLAG00000010234	ENSPLAG00000009870	ENSPLAG00000009861	ENSPLAG00000009847
Guppy	MODERN SPECIES	456	ENSPREG00000003193	ENSPREG00000003187	ENSPREG00000003177	ENSPREG00000003149	ENSPREG00000003134 ##9	ENSPREG00000003121 ##9	pomgnt1 (ENSPREG00000003100) #10	PIK3R3 (ENSPREG00000003065) ##13	ENSPREG00000003054 #14	ENSPREG00000003045	ENSPREG00000003019	ENSPREG00000003007	prrx1b (ENSPREG00000003001) #18	gorab (ENSPREG00000002992) #19	ntmt2 (ENSPREG00000002977) #21	kifap3a (ENSPREG00000002932) #22	niban1a (ENSPREG00000002912) #23	TRMT1L (ENSPREG00000002866) #24	ENSPREG00000002852 ##9	prpf38a (ENSPREG00000002835) #25	ENSPREG00000002715	ENSPREG00000002696	ENSPREG00000002664	ENSPREG00000002642	ENSPREG00000002637	ENSPREG00000002627	ENSPREG00000002548	ENSPREG00000002181	ENSPREG00000002121	ENSPREG00000002108	ENSPREG00000002083
Platyfish	MODERN SPECIES	23	ENSXMAG00000027015 ##9	ENSXMAG00000021979 ##9	ENSXMAG00000028305 ##9	pomgnt1 (ENSXMAG00000005621) #10	TSPAN1 (ENSXMAG00000005620) #11	PIK3R3 (ENSXMAG00000005376) ##13	MAST2 (ENSXMAG00000005398) #14	ENSXMAG00000005419 #16	ENSXMAG00000025454	ENSXMAG00000020975	ENSXMAG00000025566	ENSXMAG00000019870	prrx1b (ENSXMAG00000005444) #18	gorab (ENSXMAG00000005448) #19	ntmt2 (ENSXMAG00000028054) #21	kifap3a (ENSXMAG00000005452) #22	niban1a (ENSXMAG00000005465) #23	TRMT1L (ENSXMAG00000003575) #24	ENSXMAG00000012288 ##9	ENSXMAG00000027867	ENSXMAG00000026571	ENSXMAG00000025535	prpf38a (ENSXMAG00000026143) #25	ENSXMAG00000027916	ENSXMAG00000024641	ENSXMAG00000026680	ENSXMAG00000022803	ENSXMAG00000027988	ENSXMAG00000020039	ENSXMAG00000020042	ENSXMAG00000022711
NAME_4	ANCESTRAL SPECIES	344												ENSGT00990000203619.A.b.b.b.b.a.a.g	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00950000182946.lb.b.g.x ##9	ENSGT00730000111085.A #25
Mummichog	MODERN SPECIES	898															ntmt2 (ENSFHEG00000014418) #21	kifap3a (ENSFHEG00000014398) #22	niban1a (ENSFHEG00000000343) #23	TRMT1L (ENSFHEG00000014328) #24	prpf38a (ENSFHEG00000014317) #25	ENSFHEG00000014298 ##9	ENSFHEG00000014290
Sheepshead minnow	MODERN SPECIES	660													prrx1b (ENSCVAG00000011872) #18	gorab (ENSCVAG00000011881) #19	ntmt2 (ENSCVAG00000011905) #21	kifap3a (ENSCVAG00000012048) #22	niban1a (ENSCVAG00000012141) #23	TRMT1L (ENSCVAG00000012274) #24	ENSCVAG00000012280 ##9	prpf38a (ENSCVAG00000012305) #25	ENSCVAG00000012316	ENSCVAG00000012322	ENSCVAG00000012335	midn (ENSCVAG00000012372)	atp5f1d (ENSCVAG00000012385)	CBARP (ENSCVAG00000012431)
Aplocheiloidei	ANCESTRAL SPECIES	184					ENSGT00950000182946.lb.b.g.w ##9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000155705.b #14	ENSGT01050000245196	ENSGT00940000175770	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24
Mangrove rivulus	MODERN SPECIES	280	sgta (ENSKMAG00000010962) #29	ENSKMAG00000010923	zgc:113223 (ENSKMAG00000010909)	ENSKMAG00000010903	ENSKMAG00000010888 ##9	pomgnt1 (ENSKMAG00000010794) #10	TSPAN1 (ENSKMAG00000010749) #11	PIK3R3 (ENSKMAG00000010703) ##13	MAST2 (ENSKMAG00000010659) #14	ENSKMAG00000010625	ENSKMAG00000010569 #16	ENSKMAG00000010538	prrx1b (ENSKMAG00000010521) #18	gorab (ENSKMAG00000010496) #19	ntmt2 (ENSKMAG00000010477) #21	kifap3a (ENSKMAG00000010433) #22	niban1a (ENSKMAG00000010363) #23	TRMT1L (ENSKMAG00000010310) #24	ENSKMAG00000010296	ENSKMAG00000010287 ##9
Ovalentaria_B	ANCESTRAL SPECIES	67					ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26
Cichlidae	ANCESTRAL SPECIES	90						ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000158019
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00940000155265.b.b.b	ENSGT00940000155265.b.b.a	ENSGT00940000164676	ENSGT00940000153456.a	ENSGT00390000011521	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000158019	ENSGT01050000244924.a.a.b.a.a	ENSGT00390000007310	ENSGT00940000157967	ENSGT00940000159554	ENSGT01050000244887.A.a.b	ENSGT00390000010568	ENSGT00940000159571	ENSGT00940000156511.b.db	ENSGT00940000155899.e.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00940000155265.b.b.a	ENSGT00940000164676	ENSGT00940000153456.a	ENSGT00390000011521	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000158019	ENSGT01050000244924.a.a.b.a.a	ENSGT00390000007310	ENSGT00940000157967	ENSGT00940000159554	ENSGT01050000244887.A.a.b	ENSGT00390000010568	ENSGT00940000159571	ENSGT00940000156511.b.db	ENSGT00940000155899.e.a
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00940000155265.b.b.b	ENSGT00940000155265.b.b.a	ENSGT00940000164676	ENSGT00940000153456.a	ENSGT00390000011521	ENSGT00950000182946.lb.b.h #9	ENSGT00530000063632.A #10	ENSGT00940000158851 #11	ENSGT00940000156259.a.a #13	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.b.c.b #16	ENSGT01100000263594.b	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00730000111085.A #25	ENSGT00530000063498.B #26	ENSGT01030000234624.b.b.c.a.a	ENSGT00940000158019	ENSGT01050000244924.a.a.b.a.a	ENSGT00390000007310	ENSGT00940000157967	ENSGT00940000159554	ENSGT01050000244887.A.a.b	ENSGT00390000010568	ENSGT00940000159571	ENSGT00940000156511.b.db	ENSGT00940000155899.e.a
Burton s mouthbrooder	MODERN SPECIES	493								PIK3R3 (ENSHBUG00000020098) #13	ENSHBUG00000020193 #14	ENSHBUG00000020235 #14	ENSHBUG00000020249 #16	ENSHBUG00000020264	prrx1b (ENSHBUG00000020291) #18	gorab (ENSHBUG00000020307) #19	ntmt2 (ENSHBUG00000020336) #21	kifap3a (ENSHBUG00000020394) #22	niban1a (ENSHBUG00000020416) #23	ENSHBUG00000020432	TRMT1L (ENSHBUG00000000622) #24	prpf38a (ENSHBUG00000020572) #25	orc1 (ENSHBUG00000020582) #26	arl13b (ENSHBUG00000020619)	GGACT (ENSHBUG00000020632)	ENSHBUG00000020644	GGACT (ENSHBUG00000020671)	GGACT (ENSHBUG00000000819)	FARP1 (ENSHBUG00000020744)	chn1 (ENSHBUG00000020827)
Lyretail cichlid	MODERN SPECIES	395	ENSNBRG00000005173	ENSNBRG00000005036	ENSNBRG00000004922	naprt (ENSNBRG00000004897)	C8orf82 (ENSNBRG00000004885)	ifit14 (ENSNBRG00000004880) #9	pomgnt1 (ENSNBRG00000004816) #10	TSPAN1 (ENSNBRG00000004720) #11	PIK3R3 (ENSNBRG00000004658) #13	MAST2 (ENSNBRG00000004570) #14	ENSNBRG00000004539 #17	ENSNBRG00000004532 #17	prrx1b (ENSNBRG00000004459) #18	gorab (ENSNBRG00000004446) #19	ntmt2 (ENSNBRG00000004426) #21	kifap3a (ENSNBRG00000004237) #22	niban1a (ENSNBRG00000004158) #23	TRMT1L (ENSNBRG00000004053) #24	prpf38a (ENSNBRG00000004013) #25	orc1 (ENSNBRG00000003807) #26	ENSNBRG00000003752	b4galt6 (ENSNBRG00000003712)	PTBP1 (ENSNBRG00000003676)	stil (ENSNBRG00000003594)	serpinc1 (ENSNBRG00000003451)	ENSNBRG00000003414	zbtb37 (ENSNBRG00000003403)	s1pr1 (ENSNBRG00000003385)	dph5 (ENSNBRG00000003361)	slc30a7 (ENSNBRG00000003233)	vcam1b (ENSNBRG00000003191)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000019474	ENSONIG00000019475	ENSONIG00000019477	naprt (ENSONIG00000019479)	C8orf82 (ENSONIG00000019480)	ENSONIG00000020776 #9	pomgnt1 (ENSONIG00000007857) #10	TSPAN1 (ENSONIG00000007856) #11	PIK3R3 (ENSONIG00000007853) #13	MAST2 (ENSONIG00000007847) #14	ENSONIG00000007844 #16	ENSONIG00000039886 #17	prrx1b (ENSONIG00000007843) #18	gorab (ENSONIG00000007842) #19	ntmt2 (ENSONIG00000007840) #21	kifap3a (ENSONIG00000007836) #22	fam129a (ENSONIG00000007826) #23	TRMT1L (ENSONIG00000007823) #24	prpf38a (ENSONIG00000007816) #25	ENSONIG00000007813	orc1 (ENSONIG00000007807) #26	ENSONIG00000007798	b4galt6 (ENSONIG00000007793)	PTBP1 (ENSONIG00000007784)	serpinc1 (ENSONIG00000007781)	zbtb37 (ENSONIG00000007779)	s1pr1 (ENSONIG00000020775)	dph5 (ENSONIG00000007778)	slc30a7 (ENSONIG00000007772)	ENSONIG00000035983	cdc14ab (ENSONIG00000007763)
Tiger tail seahorse	MODERN SPECIES	141	psmg2 (ENSHCOG00000000861)	zgc:136493 (ENSHCOG00000003284)	ncaldb (ENSHCOG00000003277)	grhl2b (ENSHCOG00000003264)	znf706 (ENSHCOG00000003228)	ywhaz (ENSHCOG00000003217)	ENSHCOG00000003175	ENSHCOG00000003023	LIX1L (ENSHCOG00000003020)	sf3b4 (ENSHCOG00000003014)	ENSHCOG00000003007	SV2A (ENSHCOG00000003000)	ENSHCOG00000002979	tbxta (ENSHCOG00000002972)	nudc (ENSHCOG00000002958)	kifap3a (ENSHCOG00000002941) #22	ENSHCOG00000002934	zdhhc18b (ENSHCOG00000000084)	arhgef1a (ENSHCOG00000002904)	tpm3 (ENSHCOG00000002823)	ENSHCOG00000002818	ssr2 (ENSHCOG00000002806)	ENSHCOG00000002785	ENSHCOG00000002776	si:dkey-81h8.1 (ENSHCOG00000002751)	ENSHCOG00000002744	ENSHCOG00000002729	rps27.1 (ENSHCOG00000002726)	ENSHCOG00000002715	chrna11 (ENSHCOG00000002691)	snx27a (ENSHCOG00000002675)
Pinecone sodierfish	MODERN SPECIES	18	bmb (ENSMMDG00005014575)	pycr3 (ENSMMDG00005014576)	ENSMMDG00005014580	ENSMMDG00005014656 #7	orc1 (ENSMMDG00005014662) #26	prpf38a (ENSMMDG00005014677) #25	ifit15 (ENSMMDG00005014678) #9	pomgnt1 (ENSMMDG00005014683) #10	TSPAN1 (ENSMMDG00005014716) #11	PIK3R3 (ENSMMDG00005014769) #13	MAST2 (ENSMMDG00005015365) #14	ENSMMDG00005015432 #16	prrx1b (ENSMMDG00005015436) #18	gorab (ENSMMDG00005015441) #19	ntmt2 (ENSMMDG00005015445) #21	kifap3a (ENSMMDG00005015465) #22	niban1a (ENSMMDG00005015756) #23	TRMT1L (ENSMMDG00005000167) #24	ENSMMDG00005000317	ivns1abpa (ENSMMDG00005000333)	arpc5b (ENSMMDG00005000422)	PLA2G4A (ENSMMDG00005000444)	ptgs2b (ENSMMDG00005000495)	pdcb (ENSMMDG00005000506)	tprb (ENSMMDG00005000569)	prg4b (ENSMMDG00005000699)	FCHO1 (ENSMMDG00005000756)	rfx2 (ENSMMDG00005001128)	acsbg2 (ENSMMDG00005001835)	mllt1b (ENSMMDG00005004422)	acer1 (ENSMMDG00005004436)
Cod	MODERN SPECIES	3	ENSGMOG00000030815	ENSGMOG00000014103	ENSGMOG00000008558	ENSGMOG00000008540	ENSGMOG00000032839	ENSGMOG00000008521	ATP11B (ENSGMOG00000008504)	ENSGMOG00000019777	dnajc19 (ENSGMOG00000000473)	ENSGMOG00000000446	pomgnt1 (ENSGMOG00000003207) #10	TSPAN1 (ENSGMOG00000003195) #11	PIK3R3 (ENSGMOG00000000803) #13	MAST2 (ENSGMOG00000015409) #14	ntmt2 (ENSGMOG00000031238) #21	kifap3a (ENSGMOG00000009568) #22	niban1a (ENSGMOG00000009550) #23	TRMT1L (ENSGMOG00000009535) #24	ENSGMOG00000036754	ivns1abpa (ENSGMOG00000004931)	HMCN1 (ENSGMOG00000010733)	arpc5b (ENSGMOG00000010856)	PLA2G4A (ENSGMOG00000010862)	ptgs2b (ENSGMOG00000010880)	pdcb (ENSGMOG00000034832)	tprb (ENSGMOG00000010899)	prg4b (ENSGMOG00000035920)	ENSGMOG00000010966	rfx2 (ENSGMOG00000010985)	acsbg2 (ENSGMOG00000011004)	MLLT1 (ENSGMOG00000011021)
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	30	ENSGT00940000166725	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000166530	ENSGT00530000063498.B #26	ENSGT00730000111085.A #25	ENSGT00950000182946.lb.b.k.a #9	ENSGT00940000158851 #11	ENSGT00940000155705.b #14	ENSGT00950000183190.a.a.a.a.a.a ##16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a.c #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00390000012568.l	ENSGT00940000155117.f.a	ENSGT00940000154967.b.b.a	ENSGT00940000154386.d.b.a	ENSGT00940000154967.b.b.b	ENSGT00560000077332
Salmoninae	ANCESTRAL SPECIES	36	ENSGT00940000166725.j	ENSGT00940000173535	ENSGT00940000157693.p	ENSGT00940000166530.d	ENSGT00530000063498.B #26	ENSGT00730000111085.A.gb #25	ENSGT00950000182946.lb.b.k.a.b #9	ENSGT00940000158851 #11	ENSGT00940000156259.a.a.d #13	ENSGT00940000155705.b.v #14	ENSGT00950000183190.a.a.a.a.a.a.a ##16	ENSGT00950000183190.a.a.a.b.d #17	ENSGT00940000159466.e.a #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a.c #22	ENSGT00940000154149.b.a.g.b.d #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635.q	ENSGT00940000154614	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b.h	ENSGT00390000010743.a.a.f	ENSGT00940000156236.a.a	ENSGT00390000012568.l	ENSGT00940000155117.f.a.g	ENSGT00940000154967.b.b.a	ENSGT00940000154386.d.b.a	ENSGT00940000154967.b.b.b	ENSGT00560000077332
Huchen	MODERN SPECIES	2440													prrx1b (ENSHHUG00000045823) #18	gorab (ENSHHUG00000045837) #19	ntmt2 (ENSHHUG00000045841) #21	kifap3a (ENSHHUG00000045847) #22	ENSHHUG00000045861 #23	ENSHHUG00000045867 #23
Salmoninae_a	ANCESTRAL SPECIES	46	ENSGT00390000003015.c.c	ENSGT00940000166725.j	ENSGT00940000173535	ENSGT00940000157693.p	ENSGT00940000166530.d	ENSGT00530000063498.B #26	ENSGT00730000111085.A.gb #25	ENSGT00950000182946.lb.b.k.a.b #9	ENSGT00940000158851 #11	ENSGT00940000156259.a.a.d #13	ENSGT00940000155705.b.v #14	ENSGT00950000183190.a.a.a.a.a.a.a ##16	ENSGT00940000159466.e.a #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a.c #22	ENSGT00940000154149.b.a.g.b.d #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635.q	ENSGT00940000154614.le	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b.h	ENSGT00390000010743.a.a.f	ENSGT00940000156236.a.a	ENSGT00390000012568.l	ENSGT00940000155117.f.a.g	ENSGT00940000154967.b.b.a	ENSGT00940000154386.d.b.a	ENSGT00940000154967.b.b.b	ENSGT00560000077332
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00390000003015.c.c	ENSGT00940000166725.j	ENSGT00940000173535	ENSGT00940000157693.p	ENSGT00940000166530.d	ENSGT00530000063498.B #26	ENSGT00730000111085.A.gb #25	ENSGT00950000182946.lb.b.k.a.b #9	ENSGT00940000158851 #11	ENSGT00940000156259.a.a.d #13	ENSGT00940000155705.b.v #14	ENSGT00950000183190.a.a.a.a.a.a.a ##16	ENSGT00940000159466.e.a #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a.c #22	ENSGT00940000154149.b.a.g.b.d #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635.q	ENSGT00940000154614.le	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b.h	ENSGT00390000010743.a.a.f	ENSGT00940000156236.a.a	ENSGT00390000012568.l	ENSGT00940000155117.f.a.g	ENSGT00940000154967.b.b.b.d	ENSGT00560000077332	ENSGT00940000155152.f.b.g.b	ENSGT00940000156725.e.b
Rainbow trout	MODERN SPECIES	26	prpf38a (ENSOMYG00000030755) #25	ENSOMYG00000030768 #9	TSPAN1 (ENSOMYG00000030775) #11	ENSOMYG00000030788 #13	ENSOMYG00000057624	ENSOMYG00000003122	ENSOMYG00000060619	MAST2 (ENSOMYG00000030907) #14	ENSOMYG00000074663 ##16	ENSOMYG00000031208 ##16	ENSOMYG00000050606 #17	ENSOMYG00000063736	prrx1b (ENSOMYG00000009768) #18	gorab (ENSOMYG00000031254) #19	ntmt2 (ENSOMYG00000031264) #21	kifap3a (ENSOMYG00000031488) #22	niban1a (ENSOMYG00000033306) #23	TRMT1L (ENSOMYG00000033328) #24	ENSOMYG00000005863	ivns1abpa (ENSOMYG00000005937)	ENSOMYG00000007823	ENSOMYG00000070670	arpc5b (ENSOMYG00000059388)	PLA2G4A (ENSOMYG00000009095)	ptgs2b (ENSOMYG00000009717)	pdcb (ENSOMYG00000009724)	ODR4 (ENSOMYG00000009758)	b3galt2 (ENSOMYG00000072072)	ENSOMYG00000062478	ENSOMYG00000066973	ENSOMYG00000071442
Oncorhynchus_a	ANCESTRAL SPECIES	63	ENSGT00620000088018.v.b	ENSGT00390000003015.c.c	ENSGT00940000166725.j	ENSGT00940000157693.p	ENSGT00940000166530.d	ENSGT00530000063498.B #26	ENSGT00730000111085.A.gb #25	ENSGT00950000182946.lb.b.k.a.b #9	ENSGT00940000158851 #11	ENSGT00940000156259.a.a.d #13	ENSGT00940000155705.b.v #14	ENSGT00950000183190.a.a.a.a.a.a.a ##16	ENSGT00940000159466.e.a #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a.c #22	ENSGT00940000154149.b.a.g.b.d #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635.q	ENSGT00940000154614.le	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.b.h	ENSGT00390000010743.a.a.f	ENSGT00940000156236.a.a	ENSGT00390000012568.l	ENSGT00940000155117.f.a.g	ENSGT00940000154967.b.b.b.d	ENSGT00560000077332	ENSGT00940000155152.f.b.g.b	ENSGT00940000156725.e.b
Chinook salmon	MODERN SPECIES	29	TMEM125 (ENSOTSG00005023213)	si:ch73-185c24.2 (ENSOTSG00005025494)	ENSOTSG00005023224	ENSOTSG00005025495	ENSOTSG00005025496	ENSOTSG00005025497 #9	prpf38a (ENSOTSG00005025498) #25	ENSOTSG00005025499 #11	rln3b (ENSOTSG00005025500)	mrpl46 (ENSOTSG00005025501)	ENSOTSG00005025502	ENSOTSG00005025503 ##16	prrx1b (ENSOTSG00005025504) #18	gorab (ENSOTSG00005025505) #19	ntmt2 (ENSOTSG00005025507) #21	kifap3a (ENSOTSG00005025515) #22	niban1a (ENSOTSG00005025549) #23	TRMT1L (ENSOTSG00005025574) #24	ENSOTSG00005025575	ivns1abpa (ENSOTSG00005025576)	ENSOTSG00005025791	ENSOTSG00005025794	ptgs2b (ENSOTSG00005025813)	pdcb (ENSOTSG00005027644)	ODR4 (ENSOTSG00005027646)	b3galt2 (ENSOTSG00005027648)	ENSOTSG00005027663	arpc5b (ENSOTSG00005027710)	PLA2G4A (ENSOTSG00005027711)	gtpbp3 (ENSOTSG00005027712)	plvapb (ENSOTSG00005027713)
Coho salmon	MODERN SPECIES	4	TMEM125 (ENSOKIG00005044858)	ENSOKIG00005044851	ap1m3 (ENSOKIG00005044616)	tie1 (ENSOKIG00005044563)	mpl (ENSOKIG00005044515)	orc1 (ENSOKIG00005044423) #26	prpf38a (ENSOKIG00005044396) #25	ENSOKIG00005044389 #9	TSPAN1 (ENSOKIG00005044373) #11	ENSOKIG00005044310 #13	MAST2 (ENSOKIG00005041157) #14	ENSOKIG00005040983 ##16	prrx1b (ENSOKIG00005040901) #18	gorab (ENSOKIG00005040858) #19	ntmt2 (ENSOKIG00005040842) #21	kifap3a (ENSOKIG00005040351) #22	niban1a (ENSOKIG00005040279) #23	TRMT1L (ENSOKIG00005040163) #24	ENSOKIG00005040131	ENSOKIG00005040110	ivns1abpa (ENSOKIG00005039893)	ENSOKIG00005039494	arpc5b (ENSOKIG00005039322)	PLA2G4A (ENSOKIG00005037556)	ptgs2b (ENSOKIG00005035490)	pdcb (ENSOKIG00005035377)	ODR4 (ENSOKIG00005035361)	b3galt2 (ENSOKIG00005035350)	ENSOKIG00005035304	ENSOKIG00005035280	ENSOKIG00005035221
Salmo	ANCESTRAL SPECIES	20	ENSGT00390000003015.c.c	ENSGT00940000166725.j	ENSGT00940000173535	ENSGT00940000157693.p	ENSGT00940000166530.d	ENSGT00530000063498.B #26	ENSGT00730000111085.A.gb #25	ENSGT00950000182946.lb.b.k.a.b #9	ENSGT00940000158851 #11	ENSGT00940000156259.a.a.d #13	ENSGT00940000155705.b.v #14	ENSGT00950000183190.a.a.a.a.a.a.a ##16	ENSGT00940000159466.e.a #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a.c #22	ENSGT00940000154149.b.a.g.b.d #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635.q	ENSGT00940000154614.le	ENSGT00940000154654.a.b.f	ENSGT01030000234606.b.e.b.h	ENSGT00390000010743.a.a.f	ENSGT00940000156236.a.a	ENSGT00940000155117.f.a.g	ENSGT00940000154967.b.b.a	ENSGT00970000198334.C	ENSGT00940000154967.b.b.b	ENSGT00560000077332	ENSGT00940000155152.f.b.g.a.a
Atlantic salmon	MODERN SPECIES	1	orc1 (ENSSSAG00000045721) #26	prpf38a (ENSSSAG00000046270) #25	ENSSSAG00000046307 #9	ENSSSAG00000095271 #9	ENSSSAG00000108232 #9	TSN1 (ENSSSAG00000046376) #11	ENSSSAG00000117564	ENSSSAG00000079094 #13	MAST2 (ENSSSAG00000046565) #14	ENSSSAG00000099981	ENSSSAG00000084820 ##16	prrx1b (ENSSSAG00000116266) #18	gorab (ENSSSAG00000047473) #19	ENSSSAG00000116366	mettl11b (ENSSSAG00000047486) #21	kifap3a (ENSSSAG00000047655) #22	niban1a (ENSSSAG00000111722) #23	TRMT1L (ENSSSAG00000052728) #24	ENSSSAG00000103801	ivns1abpa (ENSSSAG00000052777)	ENSSSAG00000066417	arpc5b (ENSSSAG00000107373)	PLA2G4A (ENSSSAG00000065474)	ptgs2b (ENSSSAG00000076453)	pdcb (ENSSSAG00000054505)	ENSSSAG00000082185	b3galt2 (ENSSSAG00000098334)	ENSSSAG00000089822	ENSSSAG00000095209	ENSSSAG00000054477	aspm (ENSSSAG00000053226)
River trout	MODERN SPECIES	14	si:ch73-185c24.2 (ENSSTUG00000045407)	tie1 (ENSSTUG00000045449)	mpl (ENSSTUG00000046009)	orc1 (ENSSTUG00000046018) #26	prpf38a (ENSSTUG00000016919) #25	ENSSTUG00000016930 #9	TSPAN1 (ENSSTUG00000016940) #11	ENSSTUG00000016990 #13	MAST2 (ENSSTUG00000017439) #14	ENSSTUG00000019138	ENSSTUG00000019159 ##16	prrx1b (ENSSTUG00000019331) #18	gorab (ENSSTUG00000019396) #19	ntmt2 (ENSSTUG00000019418) #21	ENSSTUG00000019425	kifap3a (ENSSTUG00000019509) #22	niban1a (ENSSTUG00000019908) #23	TRMT1L (ENSSTUG00000019927) #24	ENSSTUG00000020102	ivns1abpa (ENSSTUG00000020215)	ENSSTUG00000020388	arpc5b (ENSSTUG00000020817)	PLA2G4A (ENSSTUG00000020934)	ptgs2b (ENSSTUG00000022215)	ENSSTUG00000022868	pdcb (ENSSTUG00000022871)	ENSSTUG00000022874	b3galt2 (ENSSTUG00000022880)	cfhl1 (ENSSTUG00000022906)	ENSSTUG00000023021	ENSSTUG00000023029
Northern pike	MODERN SPECIES	7	ENSELUG00000033065	tie1 (ENSELUG00000021380)	mpl (ENSELUG00000021218)	orc1 (ENSELUG00000021188) #26	prpf38a (ENSELUG00000025713) #25	ENSELUG00000025395 #9	ENSELUG00000034604 #9	pomgnt1 (ENSELUG00000020997) #10	ENSELUG00000020939 #13	MAST2 (ENSELUG00000020906) #14	ENSELUG00000020856 ##16	ENSELUG00000020809 ##16	prrx1b (ENSELUG00000020779) #18	gorab (ENSELUG00000020749) #19	ntmt2 (ENSELUG00000020731) #21	kifap3a (ENSELUG00000020722) #22	niban1a (ENSELUG00000020647) #23	TRMT1L (ENSELUG00000020587) #24	ENSELUG00000020565	ivns1abpa (ENSELUG00000020540)	ENSELUG00000020034	ENSELUG00000031820	arpc5b (ENSELUG00000020292)	PLA2G4A (ENSELUG00000020260)	ptgs2b (ENSELUG00000020167)	pdcb (ENSELUG00000020131)	ENSELUG00000034633	ENSELUG00000027649	ENSELUG00000030119	ENSELUG00000002491	ENSELUG00000009886
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00390000003574.a.d #22
Salmoninae	ANCESTRAL SPECIES	385	ENSGT01030000235036	ENSGT00390000003015.c.d	ENSGT00940000166725.i	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693.o	ENSGT00940000166530.c	ENSGT00730000111085.A.fb #25	ENSGT00950000182946.lb.b.k.a.a #9	ENSGT00530000063632.A #10	ENSGT00940000156259.a.a.c #13	ENSGT00940000155705.b.u #14	ENSGT00950000183190.a.a.a.a.a.a.b ##16	ENSGT00950000183190.a.a.a.b.c #17	ENSGT00940000159466.e.b #18	ENSGT00390000003574.a.d #22	ENSGT00940000154149.b.a.g.b.c #23	ENSGT00940000155635.r	ENSGT01030000234606.b.e.b.g	ENSGT00390000010743.a.a.e	ENSGT00940000155117.f.a.h
Huchen	MODERN SPECIES	755														ENSHHUG00000009317 #17	prrx1b (ENSHHUG00000009326) #18	kifap3a (ENSHHUG00000009409) #22	niban1a (ENSHHUG00000009454) #23	ivns1abpa (ENSHHUG00000009468)	PLA2G4A (ENSHHUG00000009516)	ptgs2b (ENSHHUG00000009695)
Salmoninae_a	ANCESTRAL SPECIES	103	ENSGT01030000235036	ENSGT00390000003015.c.d	ENSGT00940000166725.i	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693.o	ENSGT00940000166530.c	ENSGT00730000111085.A.fb #25	ENSGT00950000182946.lb.b.k.a.a #9	ENSGT00530000063632.A #10	ENSGT00940000156259.a.a.c #13	ENSGT00940000155705.b.u #14	ENSGT00950000183190.a.a.a.a.a.a.b ##16	ENSGT00950000183190.a.a.a.b.c #17	ENSGT00940000159466.e.b #18	ENSGT00390000003574.a.d #22	ENSGT00940000154149.b.a.g.b.c #23	ENSGT00940000155635.r	ENSGT01030000234606.b.e.b.g	ENSGT00390000010743.a.a.e	ENSGT00940000155117.f.a.h	ENSGT00940000155152.f.b.h	ENSGT00940000156725.e.a	ENSGT00940000158821.k	ENSGT00940000155446.g	ENSGT00390000007336.a.a.c	ENSGT00390000007029.e.a.b	ENSGT00940000157019.g.a.h	ENSGT00940000160748.a.d	ENSGT00390000000263.b	ENSGT00950000183070.a.a.mb.b.f
Salmo	ANCESTRAL SPECIES	64	ENSGT00390000014984.q	ENSGT00620000088018.v.a	ENSGT00390000003015.c.d	ENSGT00940000166725.i	ENSGT00510000048988	ENSGT00940000157693.o	ENSGT00940000166530.c	ENSGT00730000111085.A.fb #25	ENSGT00950000182946.lb.b.k.a.a #9	ENSGT00530000063632.A #10	ENSGT00940000156259.a.a.c #13	ENSGT00940000155705.b.u #14	ENSGT00950000183190.a.a.a.a.a.a.b ##16	ENSGT00950000183190.a.a.a.b.c #17	ENSGT00940000159466.e.b #18	ENSGT00390000003574.a.d #22	ENSGT00940000154149.b.a.g.b.c #23	ENSGT00940000155635.r	ENSGT00940000154654.a.b.e	ENSGT01030000234606.b.e.b.g	ENSGT00390000010743.a.a.e	ENSGT00940000155117.f.a.h	ENSGT00940000155152.f.b.h	ENSGT00940000156725.e.a	ENSGT00940000158821.k	ENSGT00940000155446.g	ENSGT00390000007336.a.a.c	ENSGT00390000007029.e.a.b	ENSGT00940000157019.g.a.h	ENSGT00390000000263.b	ENSGT00950000183070.a.a.mb.b.f
Atlantic salmon	MODERN SPECIES	15	TMEM125 (ENSSSAG00000119454)	C1orf210 (ENSSSAG00000079365)	ap1m3 (ENSSSAG00000045323)	tie1 (ENSSSAG00000079214)	TPOR (ENSSSAG00000079193)	pr38a (ENSSSAG00000079192) #25	ENSSSAG00000079187 #9	ENSSSAG00000079173 #10	ENSSSAG00000110126	ENSSSAG00000097280	ENSSSAG00000120618 #13	ENSSSAG00000090366	ENSSSAG00000078806 ##16	ENSSSAG00000078794 #17	ENSSSAG00000113189 #18	ENSSSAG00000077689 #22	ENSSSAG00000111849	ivns1abpa (ENSSSAG00000077563)	ENSSSAG00000076307	ptgs2b (ENSSSAG00000054742)	ENSSSAG00000090467	ENSSSAG00000077019	nek7 (ENSSSAG00000077057)	LHX9 (ENSSSAG00000077539)	DENND1B (ENSSSAG00000076291)	ENSSSAG00000076289	ENSSSAG00000076064	pde6d (ENSSSAG00000076055)	PHB2 (ENSSSAG00000075693)	ENSSSAG00000075676	ENSSSAG00000082287
River trout	MODERN SPECIES	33	ebna1bp2 (ENSSTUG00000008168)	CFAP57 (ENSSTUG00000008107)	TMEM125 (ENSSTUG00000008099)	ap1m3 (ENSSTUG00000006631)	C1orf210 (ENSSTUG00000006574)	tie1 (ENSSTUG00000005979)	mpl (ENSSTUG00000005928)	prpf38a (ENSSTUG00000005917) #25	ENSSTUG00000005913 #9	pomgnt1 (ENSSTUG00000005824) #10	PIK3R3 (ENSSTUG00000004411) #13	MAST2 (ENSSTUG00000004246) #14	ENSSTUG00000004176 ##16	ENSSTUG00000004149 #17	prrx1b (ENSSTUG00000004069) #18	kifap3a (ENSSTUG00000002766) #22	niban1a (ENSSTUG00000002614) #23	ivns1abpa (ENSSTUG00000002544)	arpc5b (ENSSTUG00000002513)	PLA2G4A (ENSSTUG00000001927)	ptgs2b (ENSSTUG00000001191)	b3galt2 (ENSSTUG00000001121)	crb1 (ENSSTUG00000001111)	nek7 (ENSSTUG00000000907)	lhx9 (ENSSTUG00000000861)	ENSSTUG00000000854	DENND1B (ENSSTUG00000000837)	ABHD8 (ENSSTUG00000000828)	dda1 (ENSSTUG00000000812)	ANO8 (ENSSTUG00000000647)	pde6d (ENSSTUG00000000605)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT01030000235036	ENSGT00390000003015.c.d	ENSGT00940000166725.i	ENSGT01030000234931	ENSGT00510000048988	ENSGT00940000157693.o	ENSGT00940000166530.c	ENSGT00730000111085.A.fb #25	ENSGT00530000063632.A #10	ENSGT00940000156259.a.a.c #13	ENSGT00940000155705.b.u #14	ENSGT00950000183190.a.a.a.a.a.a.b ##16	ENSGT00950000183190.a.a.a.b.c #17	ENSGT00940000159466.e.b #18	ENSGT01010000229774	ENSGT00390000003574.a.d #22	ENSGT00940000154149.b.a.g.b.c #23	ENSGT00940000155635.r	ENSGT01030000234606.b.e.b.g	ENSGT00390000010743.a.a.e	ENSGT00940000155117.f.a.h	ENSGT00940000155152.f.b.h	ENSGT00940000156725.e.a	ENSGT00940000158821.k	ENSGT00940000155446.g	ENSGT00390000007336.a.a.c	ENSGT00390000007029.e.a.b	ENSGT00940000157019.g.a.h	ENSGT00940000160748.a.d	ENSGT00390000000263.b	ENSGT00950000183070.a.a.mb.b.f
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00390000014984.q	ENSGT00620000088018.v.a	ENSGT01030000235036	ENSGT00390000003015.c.d	ENSGT00940000166725.i	ENSGT01030000234931	ENSGT00940000157693.o	ENSGT00940000166530.c	ENSGT00730000111085.A.fb #25	ENSGT00530000063632.A #10	ENSGT00940000156259.a.a.c #13	ENSGT00940000155705.b.u #14	ENSGT00950000183190.a.a.a.a.a.a.b ##16	ENSGT00940000159466.e.b #18	ENSGT01010000229774	ENSGT00390000003574.a.d #22	ENSGT00940000154149.b.a.g.b.c #23	ENSGT00940000155635.r	ENSGT01030000234606.b.e.b.g	ENSGT00390000010743.a.a.e	ENSGT00940000155152.f.b.h	ENSGT00940000156725.e.a	ENSGT00940000158821.k	ENSGT00940000155446.g	ENSGT00390000007336.a.a.c	ENSGT00390000007029.e.a.b	ENSGT00940000157019.g.a.h	ENSGT00940000160748.a.d	ENSGT00390000000263.b	ENSGT00950000183070.a.a.mb.b.f	ENSGT00980000198724
Coho salmon	MODERN SPECIES	1	ebna1bp2 (ENSOKIG00005004146)	CFAP57 (ENSOKIG00005004165)	ENSOKIG00005004187	TMEM125 (ENSOKIG00005004199)	ap1m3 (ENSOKIG00005004338)	ENSOKIG00005004696	tie1 (ENSOKIG00005004729)	mpl (ENSOKIG00005005163)	prpf38a (ENSOKIG00005005206) #25	pomgnt1 (ENSOKIG00005005244) #10	ENSOKIG00005005364 #13	MAST2 (ENSOKIG00005006912) #14	ENSOKIG00005008304 ##16	PRRX1 (ENSOKIG00005008357) #18	ENSOKIG00005008408	KIFAP3 (ENSOKIG00005008466) #22	ENSOKIG00005008659	NIBAN1 (ENSOKIG00005008670) #23	ivns1abpa (ENSOKIG00005008870)	ENSOKIG00005008894	PLA2G4A (ENSOKIG00005008974)	ptgs2b (ENSOKIG00005010606)	ENSOKIG00005010807	ENSOKIG00005010819	LHX9 (ENSOKIG00005010851)	DENND1B (ENSOKIG00005011000)	ABHD8 (ENSOKIG00005011045)	DDA1 (ENSOKIG00005011055)	ANO8 (ENSOKIG00005011092)	nr2f6b (ENSOKIG00005011192)	ENSOKIG00005011206
Chinook salmon	MODERN SPECIES		cfap144 (ENSOTSG00005013038)	ebna1bp2 (ENSOTSG00005013039)	CFAP57 (ENSOTSG00005013041)	ENSOTSG00005013047	TMEM125 (ENSOTSG00005013048)	ap1m3 (ENSOTSG00005013055)	ENSOTSG00005014171	tie1 (ENSOTSG00005014172)	mpl (ENSOTSG00005014182)	prpf38a (ENSOTSG00005014183) #25	pomgnt1 (ENSOTSG00005014187) #10	ENSOTSG00005014210	ENSOTSG00005014213 #13	ENSOTSG00005014483 ##16	prrx1b (ENSOTSG00005014500) #18	kifap3a (ENSOTSG00005014519) #22	niban1a (ENSOTSG00005023747) #23	ivns1abpa (ENSOTSG00005023749)	PLA2G4A (ENSOTSG00005023754)	ptgs2b (ENSOTSG00005023806)	ENSOTSG00005026809	ENSOTSG00005026811	crb1 (ENSOTSG00005026812)	nek7 (ENSOTSG00005026827)	lhx9 (ENSOTSG00005028017)	DENND1B (ENSOTSG00005028022)	ABHD8 (ENSOTSG00005028032)	dda1 (ENSOTSG00005028035)	ANO8 (ENSOTSG00005028038)	nr2f6b (ENSOTSG00005028040)	pde6d (ENSOTSG00005028041)
Rainbow trout	MODERN SPECIES	22	EBNA1BP2 (ENSOMYG00000004302)	CFAP57 (ENSOMYG00000004476)	TMEM125 (ENSOMYG00000052670)	ap1m3 (ENSOMYG00000004877)	C1orf210 (ENSOMYG00000005222)	tie1 (ENSOMYG00000005480)	mpl (ENSOMYG00000005603)	prpf38a (ENSOMYG00000005627) #25	POMGNT1 (ENSOMYG00000005992) #10	ENSOMYG00000007606 #13	MAST2 (ENSOMYG00000009424) #14	ENSOMYG00000009687 ##16	ENSOMYG00000009726 #17	ENSOMYG00000031234 #18	ENSOMYG00000009797	ENSOMYG00000009964 #22	ENSOMYG00000056400	ENSOMYG00000010134 #23	ENSOMYG00000056789	ivns1abpa (ENSOMYG00000010178)	ENSOMYG00000010353	ptgs2b (ENSOMYG00000010634)	ENSOMYG00000071691	ENSOMYG00000011730	nek7 (ENSOMYG00000054062)	ENSOMYG00000054799	ENSOMYG00000050036	ENSOMYG00000011779	ENSOMYG00000074033	DENND1B (ENSOMYG00000052019)	ABHD8 (ENSOMYG00000011925)
Otomorpha	ANCESTRAL SPECIES	203			ENSGT00940000154667.b.a	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00390000004798	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b.h	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00930000151043	ENSGT00390000004791	ENSGT00390000002738.b	ENSGT00940000164633
Otophysi	ANCESTRAL SPECIES	7	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466.d #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b.h	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00930000151043	ENSGT00390000004791	ENSGT00390000002738.b	ENSGT00940000164633
Characiphysae	ANCESTRAL SPECIES	24	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00940000159466.c #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00940000157620	ENSGT00940000153441.a.a	ENSGT00390000004612	ENSGT00390000017860.b	ENSGT00940000165355	ENSGT00950000182808.a.a.b.b	ENSGT00390000012305.a	ENSGT00610000086058.a	ENSGT00530000063690.a.a	ENSGT00390000003601.b.c.b	ENSGT00530000063690.a.b.a.b	ENSGT00940000156935	ENSGT00390000014817
Channel catfish	MODERN SPECIES	17	emilin1a (ENSIPUG00000007899)	Stmn4 (ENSIPUG00000007910)	Il17f (ENSIPUG00000007931)	MCM3 (ENSIPUG00000007956)	paqr8 (ENSIPUG00000008073)	znf395 (ENSIPUG00000008084)	pnoc (ENSIPUG00000008105)	PDIK1L (ENSIPUG00000008116)	elp3 (ENSIPUG00000008133)	slc25a24 (ENSIPUG00000008225)	ENSIPUG00000008267 #16	ENSIPUG00000008346	PRRX1 (ENSIPUG00000008362) #18	gorab (ENSIPUG00000008452) #19	mettl11b (ENSIPUG00000008461) #21	KIFAP3 (ENSIPUG00000008497) #22	niban1a (ENSIPUG00000008779) #23	c25h12orf57 (ENSIPUG00000008823)	srd5a3 (ENSIPUG00000008842)	TRMT1L (ENSIPUG00000008873) #24	cbr4 (ENSIPUG00000008908)	PALLD (ENSIPUG00000008999)	anapc4 (ENSIPUG00000009114)	slain2 (ENSIPUG00000009191)	lrg1 (ENSIPUG00000009218)	SLC10A4 (ENSIPUG00000009233)	zar1 (ENSIPUG00000009252)	FRYL (ENSIPUG00000009363)	OCIAD2 (ENSIPUG00000009794)	dcun1d4 (ENSIPUG00000009816)	lrrc66 (ENSIPUG00000009822)
Characiphysae_b	ANCESTRAL SPECIES	23	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00940000159466.c #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00940000157620	ENSGT00940000153441.a.a	ENSGT00390000004612	ENSGT00390000017860.b	ENSGT00940000165355	ENSGT00950000182808.a.a.b.b	ENSGT00390000012305.a	ENSGT00610000086058.a	ENSGT00530000063690.a.a	ENSGT00390000003601.b.c.b	ENSGT00530000063690.a.b.a.b	ENSGT00940000156935	ENSGT00390000014817
Electric eel	MODERN SPECIES	250	ankef1a (ENSEEEG00000005449)	emilin1a (ENSEEEG00000005444)	stmn4 (ENSEEEG00000005443)	il17a/f3 (ENSEEEG00000005440)	mcm3 (ENSEEEG00000005426)	paqr8 (ENSEEEG00000005421)	znf395b (ENSEEEG00000005419)	pnocb (ENSEEEG00000005418)	si:ch211-63o20.7 (ENSEEEG00000005417)	elp3 (ENSEEEG00000005247)	slc25a24 (ENSEEEG00000005231)	ENSEEEG00000005222 ##16	prrx1b (ENSEEEG00000005218) #18	gorab (ENSEEEG00000005215) #19	ntmt2 (ENSEEEG00000005199) #21	kifap3a (ENSEEEG00000005154) #22	niban1a (ENSEEEG00000005136) #23	TRMT1L (ENSEEEG00000005125) #24	cbr4 (ENSEEEG00000005123)
Characoidei	ANCESTRAL SPECIES	21	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000156618.c.a	ENSGT01050000244824.B	ENSGT00940000159860.e	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00940000159466.c #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00940000157620	ENSGT00940000153441.a.a	ENSGT00390000004612	ENSGT00390000017860.b	ENSGT00940000165355	ENSGT00950000182808.a.a.b.b	ENSGT00390000012305.a	ENSGT00610000086058.a	ENSGT00530000063690.a.a	ENSGT00390000003601.b.c.b	ENSGT00530000063690.a.b.a.b	ENSGT00940000156935	ENSGT00390000014817
Red-bellied piranha	MODERN SPECIES	329	ankef1a (ENSPNAG00000029721)	emilin1a (ENSPNAG00000029714)	stmn4 (ENSPNAG00000029705)	il17a/f3 (ENSPNAG00000029698)	mcm3 (ENSPNAG00000029681)	paqr8 (ENSPNAG00000004508)	znf395b (ENSPNAG00000029097)	pnocb (ENSPNAG00000029078)	si:ch211-63o20.7 (ENSPNAG00000029063)	elp3 (ENSPNAG00000029054)	slc25a24 (ENSPNAG00000028987)	ENSPNAG00000028915 #16	PRRX1 (ENSPNAG00000028803) #18	gorab (ENSPNAG00000028768) #19	ntmt2 (ENSPNAG00000028749) #21	kifap3a (ENSPNAG00000028726) #22	niban1a (ENSPNAG00000005531) #23	TRMT1L (ENSPNAG00000004389) #24
Mexicana tetra	MODERN SPECIES	18	stmn4 (ENSAMXG00000041709)	il17a/f3 (ENSAMXG00000039772)	mcm3 (ENSAMXG00000009797)	paqr8 (ENSAMXG00000025525)	znf395b (ENSAMXG00000009775)	pnocb (ENSAMXG00000042920)	si:ch211-63o20.7 (ENSAMXG00000009746)	elp3 (ENSAMXG00000009723)	slc25a24 (ENSAMXG00000009717)	ENSAMXG00000043606 ##16	ENSAMXG00000042731 #16	ENSAMXG00000036779	PRRX1 (ENSAMXG00000032983) #18	gorab (ENSAMXG00000035192) #19	ntmt2 (ENSAMXG00000009655) #21	kifap3a (ENSAMXG00000009625) #22	niban1a (ENSAMXG00000009608) #23	TRMT1L (ENSAMXG00000009602) #24	cbr4 (ENSAMXG00000036711)	PALLD (ENSAMXG00000009581)	ENSAMXG00000037574	ENSAMXG00000036278	mep1ba (ENSAMXG00000009554)	mcm3l (ENSAMXG00000032018)	si:ch211-191a24.4 (ENSAMXG00000035418)	TNS3 (ENSAMXG00000009528)	igfbp3 (ENSAMXG00000036513)	igfbp1a (ENSAMXG00000009512)	ENSAMXG00000035428	ENSAMXG00000039635	ENSAMXG00000020569
Cyprinoidei	ANCESTRAL SPECIES	8	ENSGT00940000163104	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000156852.d	ENSGT01030000234633.A.a.b	ENSGT01030000234597.a.b.a.b	ENSGT00940000157136.b	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00390000013141	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466.d #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b.h	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00930000151043	ENSGT00390000004791.c	ENSGT01030000234567.B.a.a.b.a.a.e.b	ENSGT00390000002738.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	350															ENSGT00390000008371.a.f #21	ENSGT00390000003574.a.a #22	ENSGT00940000154149.b.a.g.b.b #23	ENSGT00530000063646.a.d #24	ENSGT00390000001254.f	ENSGT00940000155635.u.a	ENSGT00940000154614	ENSGT00940000154654.a.b.h.d	ENSGT01030000234606.b.e.b.c	ENSGT00390000010743.a.a.a	ENSGT00940000156236.a.a.e	ENSGT00730000111014.o.b.a	ENSGT00530000063751.a.a.b	ENSGT00930000151043.d	ENSGT00940000164633.c.b	ENSGT00940000160168.b.a.n	ENSGT00940000166054
Cyprininae_a	ANCESTRAL SPECIES	309																ENSGT00390000003574.a.a #22	ENSGT00940000154149.b.a.g.b.b #23	ENSGT00530000063646.a.d #24	ENSGT00390000001254.f	ENSGT00940000155635.u.a	ENSGT00940000154614.pe	ENSGT00940000154654.a.b.h.d	ENSGT01030000234606.b.e.b.c	ENSGT00390000010743.a.a.a	ENSGT00940000156236.a.a.e	ENSGT00730000111014.o.b.a	ENSGT00530000063751.a.a.b	ENSGT00930000151043.d	ENSGT00940000164633.c.b	ENSGT00940000160168.b.a.n	ENSGT00940000166054
Common carp reference	MODERN SPECIES	34	emilin1a (ENSCCRG00000075193)	stmn4 (ENSCCRG00000074692)	il17a/f3 (ENSCCRG00000067104)	mcm3 (ENSCCRG00000005245)	paqr8 (ENSCCRG00000072910)	znf395b (ENSCCRG00000005473)	pnocb (ENSCCRG00000059629)	si:ch211-63o20.7 (ENSCCRG00000054786)	elp3 (ENSCCRG00000047319)	slc25a24 (ENSCCRG00000047317)	ENSCCRG00000047315 #16	ENSCCRG00000030163 #17	prrx1b (ENSCCRG00000076310) #18	gorab (ENSCCRG00000055088) #19	ntmt2 (ENSCCRG00000022893) #21	kifap3a (ENSCCRG00000022274) #22	niban1a (ENSCCRG00000022247) #23	TRMT1L (ENSCCRG00000022240) #24	ENSCCRG00000079211	ivns1abpa (ENSCCRG00000022224)	HMCN1 (ENSCCRG00000012667)	arpc5b (ENSCCRG00000045534)	PLA2G4A (ENSCCRG00000042045)	ptgs2b (ENSCCRG00000047699)	pdcb (ENSCCRG00000059989)	tprb (ENSCCRG00000041197)	prg4b (ENSCCRG00000041122)	scyl3 (ENSCCRG00000041115)	sele (ENSCCRG00000041100)	selp (ENSCCRG00000040893)	lmx1a (ENSCCRG00000068329)
Golden-line barbel	MODERN SPECIES	472	sccpdhb (ENSSGRG00000041516)	SNAP25 (ENSSGRG00000041520)	ankef1a (ENSSGRG00000041525)	emilin1a (ENSSGRG00000041528)	stmn4 (ENSSGRG00000041532)	il17a/f3 (ENSSGRG00000041534)	mcm3 (ENSSGRG00000041541)	paqr8 (ENSSGRG00000041955)	znf395b (ENSSGRG00000041956)	pnocb (ENSSGRG00000041957)	si:ch211-63o20.7 (ENSSGRG00000041959)	elp3 (ENSSGRG00000041972)	slc25a24 (ENSSGRG00000042056)	prrx1b (ENSSGRG00000042108) #18	gorab (ENSSGRG00000042113) #19	kifap3a (ENSSGRG00000042116) #22	niban1a (ENSSGRG00000042191) #23	TRMT1L (ENSSGRG00000042192) #24	ivns1abpa (ENSSGRG00000042195)	HMCN1 (ENSSGRG00000042464)	arpc5b (ENSSGRG00000042479)	PLA2G4A (ENSSGRG00000042480)	ptgs2b (ENSSGRG00000042492)	pdcb (ENSSGRG00000042838)	tprb (ENSSGRG00000042845)	prg4b (ENSSGRG00000042976)	scyl3 (ENSSGRG00000042977)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1378															ntmt2 (ENSCARG00000030023) #21	kifap3a (ENSCARG00000030066) #22
Goldfish	MODERN SPECIES	2467																kifap3a (ENSCARG00000068334) #22	niban1a (ENSCARG00000039451) #23	TRMT1L (ENSCARG00000039460) #24	ENSCARG00000039487
Cyprininae	ANCESTRAL SPECIES	58	ENSGT00940000156852.d.b	ENSGT01030000234633.A.a.b.a	ENSGT01030000234597.a.b.a.b.e	ENSGT00940000156618.c.a.a	ENSGT01050000244824.B.db.b	ENSGT00940000159860.e.b	ENSGT00940000157136.b.b	ENSGT00950000183149.C.b.c	ENSGT00940000166937.b	ENSGT00390000013141.a	ENSGT00940000164927.a.a	ENSGT00950000183190.a.a.b.c.b.a.a #16	ENSGT00940000159466.d.c.a #18	ENSGT00390000014886.i #19	ENSGT00390000008371.a.e #21	ENSGT00390000003574.a.b #22	ENSGT00940000154149.b.a.g.b.a #23	ENSGT00530000063646.a.c #24	ENSGT00390000001254.e	ENSGT00940000155635.u.b	ENSGT00940000154654.a.b.h.c	ENSGT01030000234606.b.e.b.d	ENSGT00390000010743.a.a.b	ENSGT00940000156236.a.a.f	ENSGT01030000234567.B.a.a.b.a.a.e.b	ENSGT00730000111014.o.b.b	ENSGT00530000063751.a.a.a	ENSGT00930000151043.c	ENSGT00390000004791.c.a	ENSGT00390000002738.b	ENSGT00940000164633.d
Cyprininae_a	ANCESTRAL SPECIES	257	ENSGT00940000156618.c.a.a	ENSGT01050000244824.B.db.b	ENSGT00940000157136.b.b	ENSGT00950000183149.C.b.c	ENSGT00940000166937.b	ENSGT00390000013141.a	ENSGT00940000164927.a.a	ENSGT00950000183190.a.a.b.c.b.a.a #16	ENSGT00950000183190.a.a.b.c.b.b #16	ENSGT00950000183190.a.a.b.c.b.a.b #16	ENSGT00950000183190.a.a.a.b #17	ENSGT00940000159466.d.c.a #18	ENSGT00390000014886.i #19	ENSGT00390000008371.a.f #21	ENSGT00390000008371.a.e #21	ENSGT00390000003574.a.b #22	ENSGT00940000154149.b.a.g.b.a #23	ENSGT00530000063646.a.c #24	ENSGT00390000001254.e	ENSGT00940000155635.u.b	ENSGT00940000154614.qe	ENSGT00940000154654.a.b.h.c	ENSGT01030000234606.b.e.b.d	ENSGT00390000010743.a.a.b	ENSGT00940000156236.a.a.f	ENSGT00730000111014.o.b.b	ENSGT00530000063751.a.a.a	ENSGT00930000151043.c	ENSGT00390000004791.c.a	ENSGT01030000234567.B.a.a.b.a.a.e.b	ENSGT00390000002738.b
Common carp reference	MODERN SPECIES	28	snap25a (ENSCCRG00000034090)	ankef1a (ENSCCRG00000032559)	emilin1a (ENSCCRG00000056865)	stmn4 (ENSCCRG00000068496)	il17a/f3 (ENSCCRG00000078734)	mcm3 (ENSCCRG00000020414)	znf395b (ENSCCRG00000007688)	si:ch211-63o20.7 (ENSCCRG00000066954)	elp3 (ENSCCRG00000007703)	slc25a24 (ENSCCRG00000062518)	ENSCCRG00000070865 #16	ENSCCRG00000069171 #17	prrx1b (ENSCCRG00000071513) #18	gorab (ENSCCRG00000023654) #19	ntmt2 (ENSCCRG00000037004) #21	kifap3a (ENSCCRG00000023708) #22	niban1a (ENSCCRG00000027491) #23	ENSCCRG00000028194	ivns1abpa (ENSCCRG00000028200)	HMCN1 (ENSCCRG00000021811)	arpc5b (ENSCCRG00000074120)	PLA2G4A (ENSCCRG00000045689)	ptgs2b (ENSCCRG00000045662)	pdcb (ENSCCRG00000073915)	tprb (ENSCCRG00000045588)	prg4b (ENSCCRG00000045562)	ENSCCRG00000038110	scyl3 (ENSCCRG00000049276)	si:dkey-97o5.1 (ENSCCRG00000049282)	zp3a.1 (ENSCCRG00000020935)	si:dkey-51e6.1 (ENSCCRG00000020942)
Golden-line barbel	MODERN SPECIES	259	ENSSGRG00000034703	emilin1a (ENSSGRG00000034705)	stmn4 (ENSSGRG00000034706)	il17a/f3 (ENSSGRG00000034707)	mcm3 (ENSSGRG00000034715)	znf395b (ENSSGRG00000035919)	pnocb (ENSSGRG00000035920)	si:ch211-63o20.7 (ENSSGRG00000035921)	elp3 (ENSSGRG00000035922)	slc25a24 (ENSSGRG00000036074)	ENSSGRG00000036130 #16	ENSSGRG00000036134 #17	prrx1b (ENSSGRG00000036137) #18	ENSSGRG00000036151 #19	ntmt2 (ENSSGRG00000036153) #21	kifap3a (ENSSGRG00000036160) #22	TRMT1L (ENSSGRG00000036324) #24	ENSSGRG00000036329	ivns1abpa (ENSSGRG00000036336)	arpc5b (ENSSGRG00000036499)	PLA2G4A (ENSSGRG00000036515)	ptgs2b (ENSSGRG00000036812)	pdcb (ENSSGRG00000037240)	tprb (ENSSGRG00000037250)	prg4b (ENSSGRG00000037352)	scyl3 (ENSSGRG00000037353)	si:dkey-97o5.1 (ENSSGRG00000037360)	ENSSGRG00000037363
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	39	itsn2a (ENSCARG00000066063)	ccn2a (ENSCARG00000066342)	moxd1 (ENSCARG00000066358)	il17a/f3 (ENSCARG00000066446)	mcm3 (ENSCARG00000066540)	paqr8 (ENSCARG00000067389)	znf395b (ENSCARG00000067406)	pnocb (ENSCARG00000067449)	si:ch211-63o20.7 (ENSCARG00000067453)	elp3 (ENSCARG00000067485)	slc25a24 (ENSCARG00000067716)	ENSCARG00000067854 #16	prrx1b (ENSCARG00000067889) #18	gorab (ENSCARG00000067913) #19	ntmt2 (ENSCARG00000067920) #21	kifap3a (ENSCARG00000067962) #22	ENSCARG00000068062	niban1a (ENSCARG00000068067) #23	TRMT1L (ENSCARG00000068128) #24	ivns1abpa (ENSCARG00000068328)	arpc5b (ENSCARG00000068377)	PLA2G4A (ENSCARG00000068417)	ptgs2b (ENSCARG00000068825)	pdcb (ENSCARG00000068919)	prg4b (ENSCARG00000068986)	scyl3 (ENSCARG00000068996)	si:dkey-97o5.1 (ENSCARG00000069052)	si:dkey-51e6.1 (ENSCARG00000069080)	sele (ENSCARG00000069128)	ENSCARG00000069208	ENSCARG00000069210
Goldfish	MODERN SPECIES	2055															ntmt2 (ENSCARG00000062957) #21	kifap3a (ENSCARG00000062992) #22	niban1a (ENSCARG00000063197) #23	TRMT1L (ENSCARG00000063393) #24	ENSCARG00000064492
Zebrafish	MODERN SPECIES	12	ankef1a (ENSDARG00000019135)	emilin1a (ENSDARG00000024537)	il17a/f3 (ENSDARG00000041976)	stmn4 (ENSDARG00000030106)	mcm3 (ENSDARG00000024204)	paqr8 (ENSDARG00000088828)	znf395b (ENSDARG00000024195)	pnocb (ENSDARG00000024189)	si:ch211-63o20.7 (ENSDARG00000042000)	elp3 (ENSDARG00000042005)	slc25a24 (ENSDARG00000008568)	ENSDARG00000054723 #16	prrx1b (ENSDARG00000042027) #18	gorab (ENSDARG00000042031) #19	ntmt2 (ENSDARG00000042033) #21	kifap3a (ENSDARG00000008639) #22	niban1a (ENSDARG00000042055) #23	TRMT1L (ENSDARG00000042057) #24	ENSDARG00000079036	ENSDARG00000094010	ivns1abpa (ENSDARG00000031100)	ENSDARG00000016936	arpc5b (ENSDARG00000019062)	PLA2G4A (ENSDARG00000017141)	ptgs2b (ENSDARG00000010276)	pdcb (ENSDARG00000017634)	tprb (ENSDARG00000016630)	prg4b (ENSDARG00000028163)	scyl3 (ENSDARG00000027046)	si:dkey-97o5.1 (ENSDARG00000042120)	zp3a.1 (ENSDARG00000042129)
Clupeiformes	ANCESTRAL SPECIES	178			ENSGT00940000154667.b.a	ENSGT00940000157607	ENSGT00390000004674.i.b	ENSGT00390000004798	ENSGT00390000004674.j	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00940000156132.h	ENSGT00940000164927.a	ENSGT00950000183190.a.a.b.c.b #16	ENSGT00940000159466 #18	ENSGT00390000014886 #19	ENSGT00390000008371.a #21	ENSGT00390000003574.a #22	ENSGT00940000154149.b.a.g.b #23	ENSGT00530000063646.a #24	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b.h	ENSGT01030000234606.b.e.b	ENSGT00390000010743.a.a	ENSGT00940000156236.a.a	ENSGT00730000111014.o.b	ENSGT00530000063751.a.a	ENSGT00930000151043	ENSGT00390000004791	ENSGT00390000002738.b	ENSGT00940000164633
Atlantic herring	MODERN SPECIES	1	ENSCHAG00000020364	ENSCHAG00000020355	ENSCHAG00000020330	ENSCHAG00000020293	ENSCHAG00000020274	ENSCHAG00000020245	ENSCHAG00000020237	henmt1 (ENSCHAG00000020231)	ENSCHAG00000020217	fam102bb (ENSCHAG00000020199)	slc25a24 (ENSCHAG00000019517)	ENSCHAG00000019331 #16	prrx1b (ENSCHAG00000019285) #18	gorab (ENSCHAG00000019279) #19	ntmt2 (ENSCHAG00000019275) #21	kifap3a (ENSCHAG00000018342) #22	niban1a (ENSCHAG00000017892) #23	TRMT1L (ENSCHAG00000017235) #24	ENSCHAG00000017205	ivns1abpa (ENSCHAG00000017145)	HMCN1 (ENSCHAG00000016511)	arpc5b (ENSCHAG00000016442)	PLA2G4A (ENSCHAG00000015900)	ptgs2b (ENSCHAG00000014478)	pdcb (ENSCHAG00000014371)	tprb (ENSCHAG00000010540)	prg4b (ENSCHAG00000010290)	scyl3 (ENSCHAG00000010242)	ENSCHAG00000010200	ENSCHAG00000010133	ENSCHAG00000010058
Denticle herring	MODERN SPECIES	270	gpsm2l (ENSDCDG00000010764)	stxbp3 (ENSDCDG00000010797)	ENSDCDG00000012363	ENSDCDG00000012379	ENSDCDG00000012389	ENSDCDG00000012401	fam102bb (ENSDCDG00000012430)	slc25a24 (ENSDCDG00000012454)	ENSDCDG00000012503	ENSDCDG00000012529 #16	ENSDCDG00000012581	prrx1b (ENSDCDG00000012595) #18	ENSDCDG00000012670	gorab (ENSDCDG00000012674) #19	ntmt2 (ENSDCDG00000012679) #21	kifap3a (ENSDCDG00000012684) #22	niban1a (ENSDCDG00000013239) #23	TRMT1L (ENSDCDG00000012707) #24	ENSDCDG00000013314	ENSDCDG00000013317	atf6 (ENSDCDG00000013319)	ENSDCDG00000013352	lmx1a (ENSDCDG00000013720)	TGM1 (ENSDCDG00000013724)	tbc1d7 (ENSDCDG00000013730)	ENSDCDG00000013732	ENSDCDG00000013733	ENSDCDG00000013735	ENSDCDG00000013737	ENSDCDG00000013738	exoc2 (ENSDCDG00000013742)