Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.b #10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00560000078683	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.b.a ##34	ENSGT00940000163941.A	ENSGT00940000162202.C ##37	ENSGT00940000159881.a.a.a #34
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.b #10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00560000078683	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.b.a ##34	ENSGT00940000163941.A	ENSGT00940000162202.C ##37
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00560000078683	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.b.a ##34
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000160203 #8	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34
Camelidae	ANCESTRAL SPECIES	27	ENSGT00950000182825.A.a.b.a.b.a.a.b #9	ENSGT00940000154457.a.a.d	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.b #10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.b #32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.a.a #34	ENSGT00980000199472 #35	ENSGT00390000014843 #36	ENSGT00940000162202.B #37
Arabian camel	MODERN SPECIES	3	ENSCDRG00005006108 #7	PRPH (ENSCDRG00005006126) #8	ENSCDRG00005006150 #9	ENSCDRG00005006163 #10	LMBR1L (ENSCDRG00005006301) #11	DHH (ENSCDRG00005006364) #12	RHEBL1 (ENSCDRG00005006397) #13	KMT2D (ENSCDRG00005006455) #14	PRKAG1 (ENSCDRG00005006815) #15	DDN (ENSCDRG00005007430) #16	WNT1 (ENSCDRG00005007459) #17	WNT10B (ENSCDRG00005007497) #18	ARF3 (ENSCDRG00005007669) #19	FKBP11 (ENSCDRG00005007776) #20	CCDC65 (ENSCDRG00005007938) #21	RND1 (ENSCDRG00005007992) #22	DDX23 (ENSCDRG00005008033) #23	CACNB3 (ENSCDRG00005008229) #24	ADCY6 (ENSCDRG00005008996) #25	TEX49 (ENSCDRG00005009197) #26	CCNT1 (ENSCDRG00005009254) #27	KANSL2 (ENSCDRG00005009454) #28	LALBA (ENSCDRG00005009690) #29	OR5BS1P (ENSCDRG00005009797) #30	ENSCDRG00005009851 #31	ENSCDRG00005009869 #32	ENSCDRG00005009891 #33	OR8S1 (ENSCDRG00005009912) #34	ENSCDRG00005009926 #35	C12orf54 (ENSCDRG00005009973) #36	ENSCDRG00005010054 #37
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000160203 #8	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.bc.b ##10	ENSGT00940000154457.a.a.c.a	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00390000014843 #36	ENSGT00940000162202.A ##37	ENSGT00940000162202.B #37	ENSGT00940000165904.b	ENSGT00940000162121	ENSGT00730000111596	ENSGT00390000002978	ENSGT00940000159366
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.bc.b ##10	ENSGT00940000154457.a.a.c.a	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000162202.A ##37	ENSGT00940000162202.B #37	ENSGT00940000162121	ENSGT00730000111596	ENSGT00390000002978	ENSGT00940000159366	ENSGT00940000155440.d	ENSGT00940000155489.b.f
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.bc.b ##10	ENSGT00940000154457.a.a.c.a	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000162202.A ##37	ENSGT00940000162202.B #37	ENSGT00940000162121	ENSGT00730000111596	ENSGT00390000002978	ENSGT00940000159366	ENSGT00940000155440.d	ENSGT00940000155489.b.f
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000160203 #8	ENSGT00940000154457.a.a.c.a	ENSGT00900000143450	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000162202.A ##37	ENSGT00940000162202.B #37	ENSGT00940000162121	ENSGT00730000111596	ENSGT00390000002978	ENSGT00940000159366	ENSGT00940000155440.d	ENSGT00940000155489.b.f
Monodontidae	ANCESTRAL SPECIES	6	ENSGT01010000229521	ENSGT00940000154457.a.a.c.a	ENSGT00900000143450	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.cc ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000162202.A ##37	ENSGT00940000162202.B #37	ENSGT00940000162121	ENSGT00730000111596	ENSGT00390000002978	ENSGT00940000159366	ENSGT00940000155440.d	ENSGT00940000155489.b.f
Narwhal	MODERN SPECIES	313	ENSMMNG00015021728	ENSMMNG00015021713	ENSMMNG00015021709	TUBA1B (ENSMMNG00015021671) ##10	LMBR1L (ENSMMNG00015021626) #11	DHH (ENSMMNG00015021606) #12	RHEBL1 (ENSMMNG00015021596) #13	KMT2D (ENSMMNG00015021547) #14	PRKAG1 (ENSMMNG00015021509) #15	DDN (ENSMMNG00015021490) #16	WNT1 (ENSMMNG00015021481) #17	WNT10B (ENSMMNG00015021457) #18	ARF3 (ENSMMNG00015021435) #19	FKBP11 (ENSMMNG00015021421) #20	CCDC65 (ENSMMNG00015021403) #21	RND1 (ENSMMNG00015021382) #22	DDX23 (ENSMMNG00015021351) #23	CACNB3 (ENSMMNG00015021282) #24	ADCY6 (ENSMMNG00015021235) #25	TEX49 (ENSMMNG00015021216) #26	CCNT1 (ENSMMNG00015021207) #27	KANSL2 (ENSMMNG00015021172) #28	LALBA (ENSMMNG00015021155) #29	ENSMMNG00015021133 ##37	ENSMMNG00015021120 #37	ZNF641 (ENSMMNG00015021069)	ENSMMNG00015021040	CCDC184 (ENSMMNG00015021019)	ASB8 (ENSMMNG00015020972)	PFKM (ENSMMNG00015020844)	SENP1 (ENSMMNG00015020735)
Beluga whale	MODERN SPECIES	39	ENSDLEG00000005507	ENSDLEG00000005525 ##10	ENSDLEG00000005535	ENSDLEG00000005539	LMBR1L (ENSDLEG00000005547) #11	DHH (ENSDLEG00000005560) #12	RHEBL1 (ENSDLEG00000005603) #13	ENSDLEG00000005622 #14	PRKAG1 (ENSDLEG00000005643) #15	DDN (ENSDLEG00000005658) #16	WNT1 (ENSDLEG00000005671) #17	WNT10B (ENSDLEG00000005685) #18	ARF3 (ENSDLEG00000005695) #19	FKBP11 (ENSDLEG00000005706) #20	CCDC65 (ENSDLEG00000005725) #21	RND1 (ENSDLEG00000005740) #22	DDX23 (ENSDLEG00000005750) #23	CACNB3 (ENSDLEG00000005763) #24	ADCY6 (ENSDLEG00000005780) #25	TEX49 (ENSDLEG00000005785) #26	CCNT1 (ENSDLEG00000005789) #27	KANSL2 (ENSDLEG00000005802) #28	LALBA (ENSDLEG00000005853) #29	ENSDLEG00000005857 ##37	ENSDLEG00000005879 #37	ZNF641 (ENSDLEG00000005908)	ENSDLEG00000005917	CCDC184 (ENSDLEG00000005920)	ASB8 (ENSDLEG00000005926)	PFKM (ENSDLEG00000005929)	SENP1 (ENSDLEG00000005948)
Vaquita	MODERN SPECIES	1	PRPH (ENSPSNG00000010814) #8	ENSPSNG00000010933	TUBA1A (ENSPSNG00000010994) ##10	KLHL8 (ENSPSNG00000011123)	TUBA1B (ENSPSNG00000011161) ##10	LMBR1L (ENSPSNG00000011226) #11	DHH (ENSPSNG00000011320) #12	RHEBL1 (ENSPSNG00000011379) #13	KMT2D (ENSPSNG00000011440) #14	ENSPSNG00000011515 #15	DDN (ENSPSNG00000011626) #16	WNT10B (ENSPSNG00000011881) #18	ARF3 (ENSPSNG00000011993) #19	FKBP11 (ENSPSNG00000012091) #20	CCDC65 (ENSPSNG00000012176) #21	RND1 (ENSPSNG00000012213) #22	DDX23 (ENSPSNG00000012273) #23	CACNB3 (ENSPSNG00000012498) #24	ADCY6 (ENSPSNG00000012820) #25	TEX49 (ENSPSNG00000012970) #26	CCNT1 (ENSPSNG00000013040) #27	KANSL2 (ENSPSNG00000013130) #28	LALBA (ENSPSNG00000013222) #29	ENSPSNG00000013321 ##37	ENSPSNG00000013345 #37	ZNF641 (ENSPSNG00000013419)	ENSPSNG00000013590	CCDC184 (ENSPSNG00000013611)	ASB8 (ENSPSNG00000013660)	PFKM (ENSPSNG00000013971)	SENP1 (ENSPSNG00000014150)
Dolphin	MODERN SPECIES	2013					TUBA1B (ENSTTRG00000004794) ##10	LMBR1L (ENSTTRG00000004787) #11	DHH (ENSTTRG00000004783) #12	RHEBL1 (ENSTTRG00000004778) #13	KMT2D (ENSTTRG00000004737) #14	PRKAG1 (ENSTTRG00000004730) #15	WNT1 (ENSTTRG00000004715) #17	WNT10B (ENSTTRG00000004707) #18	ARF3 (ENSTTRG00000004698) #19	FKBP11 (ENSTTRG00000004690) #20	CCDC65 (ENSTTRG00000004671) #21	RND1 (ENSTTRG00000004652) #22	DDX23 (ENSTTRG00000004604) #23
Sperm whale	MODERN SPECIES	17	KCNH3 (ENSPCTG00005008212)	SPATS2 (ENSPCTG00005008268)	ENSPCTG00005008318	C1QL4 (ENSPCTG00005008336)	TROAP (ENSPCTG00005008366)	TUBA1B (ENSPCTG00005008408) ##10	ENSPCTG00005008557	ENSPCTG00005008583	LMBR1L (ENSPCTG00005008612) #11	DHH (ENSPCTG00005008692) #12	RHEBL1 (ENSPCTG00005008730) #13	ENSPCTG00005008759 #14	ENSPCTG00005008813 #14	PRKAG1 (ENSPCTG00005008847) #15	DDN (ENSPCTG00005009026) #16	RND1 (ENSPCTG00005009054) #22	DDX23 (ENSPCTG00005009112) #23	CACNB3 (ENSPCTG00005009465) #24	ADCY6 (ENSPCTG00005009811) #25	TEX49 (ENSPCTG00005009964) #26	CCNT1 (ENSPCTG00005010029) #27	KANSL2 (ENSPCTG00005010081) #28	LALBA (ENSPCTG00005010137) #29	OR10AD1 (ENSPCTG00005010253)	ZNF641 (ENSPCTG00005010300)	H1-7 (ENSPCTG00005010454)	CCDC184 (ENSPCTG00005010471)	ASB8 (ENSPCTG00005010504)	PFKM (ENSPCTG00005010671)	SENP1 (ENSPCTG00005011241)	COL2A1 (ENSPCTG00005011414)
Blue whale	MODERN SPECIES	1	TUBA1C (ENSBMSG00010017602) ##10	ENSBMSG00010017570	ENSBMSG00010017482 ##10	LMBR1L (ENSBMSG00010017366) #11	DHH (ENSBMSG00010017307) #12	RHEBL1 (ENSBMSG00010017253) #13	ENSBMSG00010017213 #14	ENSBMSG00010017183 #14	ENSBMSG00010017118 #15	DDN (ENSBMSG00010017081) #16	WNT1 (ENSBMSG00010017037) #17	WNT10B (ENSBMSG00010016972) #18	ARF3 (ENSBMSG00010016925) #19	FKBP11 (ENSBMSG00010016883) #20	CCDC65 (ENSBMSG00010016833) #21	RND1 (ENSBMSG00010016812) #22	DDX23 (ENSBMSG00010016731) #23	CACNB3 (ENSBMSG00010015985) #24	ADCY6 (ENSBMSG00010015810) #25	TEX49 (ENSBMSG00010015728) #26	CCNT1 (ENSBMSG00010015691) #27	KANSL2 (ENSBMSG00010015639) #28	LALBA (ENSBMSG00010015595) #29	C12orf54 (ENSBMSG00010015534) #36	ENSBMSG00010015505 ##37	ENSBMSG00010015482 #37	ENSBMSG00010015450 #37	ENSBMSG00010015426	ZNF641 (ENSBMSG00010015344)	H1-7 (ENSBMSG00010015314)	CCDC184 (ENSBMSG00010015284)
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00960000190898	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.i #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34
Yarkand deer	MODERN SPECIES	22	TROAP (ENSCHYG00000003840)	PRPH (ENSCHYG00000003901) #8	TUBA1B (ENSCHYG00000003929) ##10	ENSCHYG00000003953	LMBR1L (ENSCHYG00000003957) #11	DHH (ENSCHYG00000005055) #12	RHEBL1 (ENSCHYG00000005073) #13	KMT2D (ENSCHYG00000005198) #14	PRKAG1 (ENSCHYG00000005803) #15	DDN (ENSCHYG00000006028) #16	WNT1 (ENSCHYG00000006049) #17	WNT10B (ENSCHYG00000006086) #18	ENSCHYG00000006160 #19	ENSCHYG00000006248	CCDC65 (ENSCHYG00000006275) #21	RND1 (ENSCHYG00000006305) #22	ENSCHYG00000006333 #23	CACNB3 (ENSCHYG00000006420) #24	ADCY6 (ENSCHYG00000006802) #25	TEX49 (ENSCHYG00000007024) #26	CCNT1 (ENSCHYG00000007058) #27	KANSL2 (ENSCHYG00000007154) #28	LALBA (ENSCHYG00000007267) #29	OR5BS1P (ENSCHYG00000007297) #30	ENSCHYG00000007310 #31	ENSCHYG00000007316 ##32	ENSCHYG00000007334 #32	ENSCHYG00000007345 ##32	ENSCHYG00000007357 #33	ENSCHYG00000007368 ##34	OR8S1 (ENSCHYG00000007382) #34
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00960000190898	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.i #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34
Siberian musk deer	MODERN SPECIES	320	ENSMMSG00000012233	ENSMMSG00000012225 #9	ENSMMSG00000012207	ENSMMSG00000012192 ##10	LMBR1L (ENSMMSG00000012091) #11	DHH (ENSMMSG00000012067) #12	RHEBL1 (ENSMMSG00000012021) #13	KMT2D (ENSMMSG00000011813) #14	PRKAG1 (ENSMMSG00000011683) #15	DDN (ENSMMSG00000011655) #16	WNT1 (ENSMMSG00000011621) #17	WNT10B (ENSMMSG00000011539) #18	ARF3 (ENSMMSG00000011483) #19	FKBP11 (ENSMMSG00000011435) #20	CCDC65 (ENSMMSG00000011417) #21	RND1 (ENSMMSG00000011388) #22	DDX23 (ENSMMSG00000011285) #23	CACNB3 (ENSMMSG00000011142) #24	ADCY6 (ENSMMSG00000010871) #25	TEX49 (ENSMMSG00000010808) #26	CCNT1 (ENSMMSG00000010725) #27	KANSL2 (ENSMMSG00000010604) #28	LALBA (ENSMMSG00000010555) #29	ENSMMSG00000010541 #31	ENSMMSG00000010527	ENSMMSG00000010508 ##32	ENSMMSG00000010488 #32	ENSMMSG00000010450	ENSMMSG00000010441	C12orf54 (ENSMMSG00000010410) #36	ENSMMSG00000010379
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00960000190898	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.j #30	ENSGT00940000163803.i #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34
Caprinae	ANCESTRAL SPECIES		ENSGT00940000160203 #8	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.j #30	ENSGT00940000163803.i #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34	ENSGT00390000014843 #36
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020000929	TUBA1C (ENSOARG00020000944) ##10	TUBA1A (ENSOARG00020000988) ##10	ENSOARG00020001038 ##10	LMBR1L (ENSOARG00020001056) #11	DHH (ENSOARG00020001078) #12	RHEBL1 (ENSOARG00020001088) #13	KMT2D (ENSOARG00020001142) #14	PRKAG1 (ENSOARG00020001353) #15	DDN (ENSOARG00020001388) #16	WNT1 (ENSOARG00020001399) #17	WNT10B (ENSOARG00020001413) #18	ARF3 (ENSOARG00020001435) #19	FKBP11 (ENSOARG00020001464) #20	CCDC65 (ENSOARG00020001481) #21	RND1 (ENSOARG00020001495) #22	DDX23 (ENSOARG00020001513) #23	CACNB3 (ENSOARG00020001592) #24	ADCY6 (ENSOARG00020001829) #25	TEX49 (ENSOARG00020001874) #26	CCNT1 (ENSOARG00020001901) #27	KANSL2 (ENSOARG00020001947) #28	LALBA (ENSOARG00020001995) #29	ENSOARG00020002005 #30	ENSOARG00020002016 #30	ENSOARG00020002030 #31	ENSOARG00020002038 ##32	ENSOARG00020002069 #33	ENSOARG00020002087 ##34	OR8S1 (ENSOARG00020002101) #34	ENSOARG00020002107 #33
Goat	MODERN SPECIES	24	ENSCHIG00000019237	ENSCHIG00000025067	TUBA1A (ENSCHIG00000022988) ##10	TUBA1B (ENSCHIG00000018025) ##10	LMBR1L (ENSCHIG00000015579) #11	DHH (ENSCHIG00000009754) #12	RHEBL1 (ENSCHIG00000016686) #13	KMT2D (ENSCHIG00000015068) #14	PRKAG1 (ENSCHIG00000020571) #15	DDN (ENSCHIG00000009245) #16	WNT1 (ENSCHIG00000018993) #17	WNT10B (ENSCHIG00000010919) #18	ARF3 (ENSCHIG00000019252) #19	FKBP11 (ENSCHIG00000015331) #20	CCDC65 (ENSCHIG00000009627) #21	RND1 (ENSCHIG00000026053) #22	DDX23 (ENSCHIG00000018783) #23	CACNB3 (ENSCHIG00000012486) #24	ADCY6 (ENSCHIG00000011753) #25	TEX49 (ENSCHIG00000013799) #26	CCNT1 (ENSCHIG00000024236) #27	KANSL2 (ENSCHIG00000026147) #28	LALBA (ENSCHIG00000021449) #29	ENSCHIG00000011758 ##32	ENSCHIG00000022566 #33	C12orf54 (ENSCHIG00000026745) #36	ENSCHIG00000011654 ##37	ENSCHIG00000009579 #37	ZNF641 (ENSCHIG00000023090)	ENSCHIG00000009244	ENSCHIG00000009773
Bovinae	ANCESTRAL SPECIES	17	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.dc.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00960000190898	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.ec ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.i.b.a.a #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34
Bos	ANCESTRAL SPECIES	2	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.dc.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00960000190898	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.ec ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.i.b.a.a #30	ENSGT00970000197187	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A.a ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34
Bos_a	ANCESTRAL SPECIES	3	ENSGT00950000182825.A.a.b.a.b.a.b.a.a.a ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.ec ##10	ENSGT00960000190898	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.i.b.a.a #30	ENSGT00970000197187	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A.a ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34
Wild yak	MODERN SPECIES	811	ENSBMUG00000023293 ##10	ENSBMUG00000023265 ##10	ENSBMUG00000023231	TUBA1A (ENSBMUG00000023218) ##10	LMBR1L (ENSBMUG00000023203) #11	DHH (ENSBMUG00000023184) #12	RHEBL1 (ENSBMUG00000023169) #13	KMT2D (ENSBMUG00000023143) #14	PRKAG1 (ENSBMUG00000023104) #15	DDN (ENSBMUG00000023077) #16	WNT1 (ENSBMUG00000023065) #17	WNT10B (ENSBMUG00000023052) #18	ARF3 (ENSBMUG00000023035) #19	FKBP11 (ENSBMUG00000023022) #20	CCDC65 (ENSBMUG00000022996) #21	RND1 (ENSBMUG00000022988) #22	DDX23 (ENSBMUG00000022978) #23	CACNB3 (ENSBMUG00000022951) #24	ADCY6 (ENSBMUG00000022919) #25	TEX49 (ENSBMUG00000022878) #26	CCNT1 (ENSBMUG00000022863) #27	KANSL2 (ENSBMUG00000022822) #28	LALBA (ENSBMUG00000022803) #29	ENSBMUG00000022798 #30	ENSBMUG00000022792 #30	ENSBMUG00000022786 #30	ENSBMUG00000022781 #30
Domestic yak	MODERN SPECIES	24	TUBA1C (ENSBGRG00000001528) ##10	ENSBGRG00000001514	ENSBGRG00000001508	TUBA1B (ENSBGRG00000001452) ##10	LMBR1L (ENSBGRG00000001347) #11	DHH (ENSBGRG00000001304) #12	RHEBL1 (ENSBGRG00000001273) #13	ENSBGRG00000001247 #14	ENSBGRG00000001218 #14	PRKAG1 (ENSBGRG00000001150) #15	DDN (ENSBGRG00000001128) #16	WNT1 (ENSBGRG00000001101) #17	WNT10B (ENSBGRG00000001078) #18	ENSBGRG00000000979 #19	CCDC65 (ENSBGRG00000000948) #21	RND1 (ENSBGRG00000000933) #22	DDX23 (ENSBGRG00000000870) #23	CACNB3 (ENSBGRG00000000782) #24	ADCY6 (ENSBGRG00000000673) #25	TEX49 (ENSBGRG00000000640) #26	ENSBGRG00000000624 #27	KANSL2 (ENSBGRG00000000597) #28	OR5BS1P (ENSBGRG00000000585) #30	ENSBGRG00000000479 #29	ENSBGRG00000000462	ENSBGRG00000000452 #31	ENSBGRG00000000448 ##32	ENSBGRG00000000442 ##32	ENSBGRG00000000434 #33	ENSBGRG00000000426 ##34	ENSBGRG00000000359
Bos_b	ANCESTRAL SPECIES	4	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.dc.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00960000190898	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b.ec ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000161726 #29	ENSGT00940000163803.i.b.a.a #30	ENSGT00970000197187	ENSGT00940000162388.B #31	ENSGT00940000162388.C.a ##32	ENSGT00940000162388.C.b #32	ENSGT00940000162388.A.b ##32	ENSGT00940000162388.A.a ##32	ENSGT00940000159881.a.b.b ##34
Cow	MODERN SPECIES	24	TUBA1C (ENSBTAG00000039992) ##10	TUBA1A (ENSBTAG00000001489) ##10	ENSBTAG00000052201	TUBA1B (ENSBTAG00000012244) ##10	LMBR1L (ENSBTAG00000044048) #11	DHH (ENSBTAG00000000124) #12	RHEBL1 (ENSBTAG00000006557) #13	KMT2D (ENSBTAG00000014429) #14	PRKAG1 (ENSBTAG00000014426) #15	DDN (ENSBTAG00000014424) #16	WNT1 (ENSBTAG00000015364) #17	WNT10B (ENSBTAG00000015347) #18	ARF3 (ENSBTAG00000051755) #19	FKBP11 (ENSBTAG00000015828) #20	CCDC65 (ENSBTAG00000015825) #21	RND1 (ENSBTAG00000018773) #22	DDX23 (ENSBTAG00000021810) #23	CACNB3 (ENSBTAG00000021808) #24	ADCY6 (ENSBTAG00000005464) #25	TEX49 (ENSBTAG00000054993) #26	CCNT1 (ENSBTAG00000005861) #27	KANSL2 (ENSBTAG00000002693) #28	LALBA (ENSBTAG00000005859) #29	ENSBTAG00000051046	OR8S8 (ENSBTAG00000038290) #31	OR8S27 (ENSBTAG00000007706) ##32	OR8S25 (ENSBTAG00000050247) #32	OR8S10 (ENSBTAG00000051668) ##32	OR8S15 (ENSBTAG00000054691) ##34	OR8S1 (ENSBTAG00000038670) #34	OR8S24 (ENSBTAG00000052728)
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005019629 ##10	ENSBIXG00005003208	ENSBIXG00005019748	LMBR1L (ENSBIXG00005019839) #11	DHH (ENSBIXG00005019876) #12	RHEBL1 (ENSBIXG00005005865) #13	KMT2D (ENSBIXG00005003303) #14	PRKAG1 (ENSBIXG00005003339) #15	DDN (ENSBIXG00005020214) #16	WNT1 (ENSBIXG00005020242) #17	WNT10B (ENSBIXG00005003396) #18	ENSBIXG00005020272	ENSBIXG00005003404	CCDC65 (ENSBIXG00005020299) #21	ENSBIXG00005020352 #19	RND1 (ENSBIXG00005003441) #22	DDX23 (ENSBIXG00005020544) #23	CACNB3 (ENSBIXG00005007344) #24	ADCY6 (ENSBIXG00005003512) #25	TEX49 (ENSBIXG00005006658) #26	ENSBIXG00005020791	CCNT1 (ENSBIXG00005020870) #27	KANSL2 (ENSBIXG00005006660) #28	OR5BS1P (ENSBIXG00005021006) #30	ENSBIXG00005003554 #29	ENSBIXG00005021075	ENSBIXG00005006598 #31	ENSBIXG00005021096 ##32	ENSBIXG00005021105 #32	ENSBIXG00005021112 ##32	ENSBIXG00005021120 ##32
American bison	MODERN SPECIES	3297	TUBA1A (ENSBBBG00000007243) ##10	ENSBBBG00000023336	TUBA1B (ENSBBBG00000023348) ##10	LMBR1L (ENSBBBG00000006114) #11	DHH (ENSBBBG00000023379) #12	RHEBL1 (ENSBBBG00000023390) #13	KMT2D (ENSBBBG00000023729) #14	PRKAG1 (ENSBBBG00000023811) #15	DDN (ENSBBBG00000023827) #16	WNT1 (ENSBBBG00000023837) #17	WNT10B (ENSBBBG00000023874) #18	ARF3 (ENSBBBG00000000297) #19	ENSBBBG00000023893 #20	ENSBBBG00000023906 #20	CCDC65 (ENSBBBG00000023926) #21	RND1 (ENSBBBG00000023931) #22	DDX23 (ENSBBBG00000006233) #23	CACNB3 (ENSBBBG00000024120) #24	ADCY6 (ENSBBBG00000006325) #25	TEX49 (ENSBBBG00000024301) #26	CCNT1 (ENSBBBG00000024356) #27	KANSL2 (ENSBBBG00000008714) #28	LALBA (ENSBBBG00000024432) #29	OR5BS1P (ENSBBBG00000009008) #30	ENSBBBG00000024447	ENSBBBG00000024452	EDDM13 (ENSBBBG00000024494)	ENSBBBG00000006390	ZNF583 (ENSBBBG00000024520)	ZNF582 (ENSBBBG00000006396)	ENSBBBG00000024546
Suina	ANCESTRAL SPECIES	21	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00560000078683	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000167128	ENSGT00940000157255	ENSGT00390000015968	ENSGT00940000157835	ENSGT00950000183132.A	ENSGT01050000244879.b.a.b.a	ENSGT00390000014700.a	ENSGT00390000013899.a.a	ENSGT00530000063817.b	ENSGT00940000155455
Chacoan peccary	MODERN SPECIES	899	DNAJC22 (ENSCWAG00000018638)	C1QL4 (ENSCWAG00000018661)	TROAP (ENSCWAG00000018696)	PRPH (ENSCWAG00000018787) #8	TUBA1C (ENSCWAG00000018842) ##10	LMBR1L (ENSCWAG00000019023) #11	DHH (ENSCWAG00000019060) #12	RHEBL1 (ENSCWAG00000019080) #13	PRKAG1 (ENSCWAG00000019683) #15	DDN (ENSCWAG00000019760) #16	WNT1 (ENSCWAG00000019782) #17	WNT10B (ENSCWAG00000019813) #18	ARF3 (ENSCWAG00000019853) #19	FKBP11 (ENSCWAG00000019881) #20	CCDC65 (ENSCWAG00000019906) #21	RND1 (ENSCWAG00000019925) #22	DDX23 (ENSCWAG00000019941) #23	CACNB3 (ENSCWAG00000020007) #24	ADCY6 (ENSCWAG00000020127) #25	TEX49 (ENSCWAG00000020170) #26	CCNT1 (ENSCWAG00000020191) #27	ENSCWAG00000020216	NUAK1 (ENSCWAG00000020234)	CKAP4 (ENSCWAG00000020245)	TCP11L2 (ENSCWAG00000020258)	POLR3B (ENSCWAG00000020275)	RFX4 (ENSCWAG00000020335)	RIC8B (ENSCWAG00000020465)	TMEM263 (ENSCWAG00000020539)	MTERF2 (ENSCWAG00000020546)	CRY1 (ENSCWAG00000020554)
Pig	MODERN SPECIES	13	ENSSSCG00000000194	TUBA1B (ENSSSCG00000000190) ##10	LMBR1L (ENSSSCG00000000189) #11	DHH (ENSSSCG00000000188) #12	RHEBL1 (ENSSSCG00000000186) #13	ENSSSCG00000042640 #14	ENSSSCG00000035856 #14	PRKAG1 (ENSSSCG00000000185) #15	DDN (ENSSSCG00000000184) #16	WNT1 (ENSSSCG00000000183) #17	WNT10B (ENSSSCG00000000182) #18	ARF3 (ENSSSCG00000051954) #19	ENSSSCG00000032202	FKBP11 (ENSSSCG00000059895) #20	CCDC65 (ENSSSCG00000000179) #21	RND1 (ENSSSCG00000038562) #22	DDX23 (ENSSSCG00000000176) #23	CACNB3 (ENSSSCG00000032967) #24	ADCY6 (ENSSSCG00000000175) #25	TEX49 (ENSSSCG00000000174) #26	CCNT1 (ENSSSCG00000038181) #27	C12orf75 (ENSSSCG00000031661)	NUAK1 (ENSSSCG00000032861)	CKAP4 (ENSSSCG00000000171)	TCP11L2 (ENSSSCG00000024881)	POLR3B (ENSSSCG00000057209)	RFX4 (ENSSSCG00000052141)	RIC8B (ENSSSCG00000000167)	TMEM263 (ENSSSCG00000038968)	MTERF2 (ENSSSCG00000039109)	CRY1 (ENSSSCG00000000164)
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000160203 #8	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.b.a ##34
Carnivora	ANCESTRAL SPECIES	3	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.b #9	ENSGT00950000182825.A.a.b.a.b.a.b.b #10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.b.a ##34	ENSGT00940000159881.a.a.b #33
Caniformia	ANCESTRAL SPECIES	19	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.a.b.h #9	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b.d #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.b.a ##34
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00940000154457.b	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b.c.a #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.b.a ##34
Ursidae	ANCESTRAL SPECIES	36	ENSGT00950000185831	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.a ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B.a #31
Ursus	ANCESTRAL SPECIES	39	ENSGT00950000185831	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.a ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000161726 #29	ENSGT00940000162388.B.a #31	ENSGT00940000159881.a.a.b.c.a #33	ENSGT00940000162388.A ##32	ENSGT00940000162388.B.b #31
Polar bear	MODERN SPECIES	262	ENSUMAG00000006609	TUBA1B (ENSUMAG00000006597) ##10	LMBR1L (ENSUMAG00000006589) #11	DHH (ENSUMAG00000006584) #12	RHEBL1 (ENSUMAG00000006580) #13	ENSUMAG00000006572 #14	ENSUMAG00000006565 #14	ENSUMAG00000006564	PRKAG1 (ENSUMAG00000006562) #15	WNT1 (ENSUMAG00000006560) #17	WNT10B (ENSUMAG00000006558) #18	ENSUMAG00000006555 #19	FKBP11 (ENSUMAG00000006552) #20	ENSUMAG00000006550	CCDC65 (ENSUMAG00000006548) #21	RND1 (ENSUMAG00000006545) #22	DDX23 (ENSUMAG00000006538) #23	CACNB3 (ENSUMAG00000006493) #24	ADCY6 (ENSUMAG00000006483) #25	TEX49 (ENSUMAG00000006472) #26	CCNT1 (ENSUMAG00000006450) #27	KANSL2 (ENSUMAG00000006435) #28	ENSUMAG00000006431	LALBA (ENSUMAG00000006409) #29	ENSUMAG00000006405 #31	ENSUMAG00000006397 ##32	ENSUMAG00000006394 #31	OR8S1 (ENSUMAG00000006392) #34	ENSUMAG00000006389	ENSUMAG00000006386	ENSUMAG00000006382 ##37
American black bear	MODERN SPECIES	751				LMBR1L (ENSUAMG00000027066) #11	DHH (ENSUAMG00000027067) #12	RHEBL1 (ENSUAMG00000027068) #13	KMT2D (ENSUAMG00000027069) #14	PRKAG1 (ENSUAMG00000027070) #15	DDN (ENSUAMG00000027071) #16	WNT1 (ENSUAMG00000027072) #17	WNT10B (ENSUAMG00000027073) #18	ARF3 (ENSUAMG00000027074) #19	FKBP11 (ENSUAMG00000027075) #20	ENSUAMG00000027076 #21	ENSUAMG00000027080 #21	RND1 (ENSUAMG00000027081) #22	DDX23 (ENSUAMG00000027082) #23	CACNB3 (ENSUAMG00000027084) #24
Giant Panda	MODERN SPECIES	7	SPATS2 (ENSAMEG00000000881)	DNAJC22 (ENSAMEG00000000876)	C1QL4 (ENSAMEG00000030468)	TROAP (ENSAMEG00000000850)	PRPH (ENSAMEG00000000783) #8	TUBA1C (ENSAMEG00000025910) ##10	LMBR1L (ENSAMEG00000006887) #11	DHH (ENSAMEG00000006895) #12	RHEBL1 (ENSAMEG00000006903) #13	KMT2D (ENSAMEG00000006918) #14	DDN (ENSAMEG00000028769) #16	WNT1 (ENSAMEG00000007017) #17	WNT10B (ENSAMEG00000007028) #18	ENSAMEG00000026161 #19	CCDC65 (ENSAMEG00000007083) #21	RND1 (ENSAMEG00000028088) #22	DDX23 (ENSAMEG00000007123) #23	CACNB3 (ENSAMEG00000007171) #24	ADCY6 (ENSAMEG00000007210) #25	TEX49 (ENSAMEG00000007279) #26	CCNT1 (ENSAMEG00000007281) #27	KANSL2 (ENSAMEG00000007312) #28	ENSAMEG00000007338	LALBA (ENSAMEG00000007352) #29	OR5BS1P (ENSAMEG00000007376) #30	ENSAMEG00000030163 #31	ENSAMEG00000029295 ##34	ENSAMEG00000030502 ##34	OR8S1 (ENSAMEG00000025995) #34	ENSAMEG00000030056	C12orf54 (ENSAMEG00000006120) #36
Mustelinae	ANCESTRAL SPECIES	33	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00940000154457.b	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.b.c.b #33	ENSGT00940000162202.C ##37
American mink	MODERN SPECIES	196	PRPH (ENSNVIG00000006650) #8	TUBA1C (ENSNVIG00000006678) ##10	TUBA1A (ENSNVIG00000006688) ##10	ENSNVIG00000006708 #9	LMBRL (ENSNVIG00000006723) #11	DHH (ENSNVIG00000006799) #12	RHEBL1 (ENSNVIG00000006821) #13	KMT2D (ENSNVIG00000006871) #14	PRKAG1 (ENSNVIG00000007086) #15	DDN (ENSNVIG00000007147) #16	WNT1 (ENSNVIG00000007159) #17	ENSNVIG00000007174 #18	ARF3 (ENSNVIG00000007196) #19	FKBP11 (ENSNVIG00000007239) #20	CCDC65 (ENSNVIG00000007265) #21	RND1 (ENSNVIG00000007275) #22	DDX23 (ENSNVIG00000007288) #23	CACNB3 (ENSNVIG00000007329) #24	ADCY6 (ENSNVIG00000007481) #25	TEX49 (ENSNVIG00000007724) #26	CCNT1 (ENSNVIG00000007751) #27	KANSL2 (ENSNVIG00000007784) #28	ENSNVIG00000007827	LALBA (ENSNVIG00000007843) #29	OR5BS1P (ENSNVIG00000007849) #30	ENSNVIG00000007858 #31	ENSNVIG00000007864 ##32	ENSNVIG00000007869 ##34	ENSNVIG00000007870 ##37	OR8S1 (ENSNVIG00000007877) #34	ENSNVIG00000007881
Canidae	ANCESTRAL SPECIES	8	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.a.b.h #9	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000153241.A.h	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B.c #31	ENSGT00940000162388.B.d.b #31	ENSGT00940000162388.B.d.a #31	ENSGT00940000162388.A ##32	ENSGT00940000159881.a.a.b.d #33
Red fox	MODERN SPECIES	32	TROAP (ENSVVUG00000020927)	PRPH (ENSVVUG00000020924) #8	ENSVVUG00000020906	ENSVVUG00000020903	ENSVVUG00000020900 ##10	LMBR1L (ENSVVUG00000020897) #11	DHH (ENSVVUG00000020895) #12	RHEBL1 (ENSVVUG00000020894) #13	PRKAG1 (ENSVVUG00000019735) #15	DDN (ENSVVUG00000019700) #16	WNT1 (ENSVVUG00000019697) #17	WNT10B (ENSVVUG00000019690) #18	ARF3 (ENSVVUG00000019673) #19	ENSVVUG00000019671 #20	CCDC65 (ENSVVUG00000019666) #21	RND1 (ENSVVUG00000019659) #22	DDX23 (ENSVVUG00000019648) #23	CACNB3 (ENSVVUG00000019645) #24	ADCY6 (ENSVVUG00000019630) #25	TEX49 (ENSVVUG00000019619) #26	CCNT1 (ENSVVUG00000019590) #27	ENSVVUG00000019583	ENSVVUG00000019578	LALBA (ENSVVUG00000019572) #29	ENSVVUG00000019568 #31	ENSVVUG00000019564 #31	ENSVVUG00000019563 #31	ENSVVUG00000019556 ##34	ENSVVUG00000019553 ##34	C12orf54 (ENSVVUG00000019545) #36	ZNF641 (ENSVVUG00000019539)
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.a.b.h #9	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000153241.A.h	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B.c #31	ENSGT00940000162388.B.d.b #31	ENSGT00940000162388.B.d.a.b #31	ENSGT00940000162388.B.d.a.a #31	ENSGT00940000162388.A ##32
Dingo	MODERN SPECIES	329	ENSCAFG00020013475	ENSCAFG00020013474 #9	TUBA1A (ENSCAFG00020013458) ##10	TUBA1B (ENSCAFG00020013431) ##10	LMBR1L (ENSCAFG00020013423) #11	DHH (ENSCAFG00020013420) #12	RHEBL1 (ENSCAFG00020013417) #13	ENSCAFG00020013412 #14	PRKAG1 (ENSCAFG00020013408) #15	DDN (ENSCAFG00020013406) #16	WNT1 (ENSCAFG00020013401) #17	WNT10B (ENSCAFG00020013394) #18	ARF3 (ENSCAFG00020013389) #19	FKBP11 (ENSCAFG00020013388) #20	CCDC65 (ENSCAFG00020013387) #21	RND1 (ENSCAFG00020013386) #22	DDX23 (ENSCAFG00020013383) #23	CACNB3 (ENSCAFG00020013365) #24	ADCY6 (ENSCAFG00020013357) #25	TEX49 (ENSCAFG00020013356) #26	CCNT1 (ENSCAFG00020013349) #27	KANSL2 (ENSCAFG00020013339) #28	ENSCAFG00020013334	ENSCAFG00020013331	LALBA (ENSCAFG00020013310) #29	ENSCAFG00020013309 #31	ENSCAFG00020013301 #31	ENSCAFG00020013299 #31	ENSCAFG00020013296 #31	ENSCAFG00020013294 ##32	ENSCAFG00020013293 #33
Dog	MODERN SPECIES	19	ENSCAFG00845020455	PRPH (ENSCAFG00845020632) #8	ENSCAFG00845020819	TUBA1B (ENSCAFG00845021145) ##10	LMBR1L (ENSCAFG00845021402) #11	DHH (ENSCAFG00845021487) #12	RHEBL1 (ENSCAFG00845021547) #13	KMT2D (ENSCAFG00845021787) #14	PRKAG1 (ENSCAFG00845022388) #15	DDN (ENSCAFG00845022517) #16	WNT1 (ENSCAFG00845022557) #17	WNT10B (ENSCAFG00845022647) #18	ENSCAFG00845022913 #19	FKBP11 (ENSCAFG00845023275) #20	CCDC65 (ENSCAFG00845023368) #21	RND1 (ENSCAFG00845023432) #22	DDX23 (ENSCAFG00845023512) #23	CACNB3 (ENSCAFG00845023805) #24	ADCY6 (ENSCAFG00845024352) #25	TEX49 (ENSCAFG00845024904) #26	CCNT1 (ENSCAFG00845024989) #27	KANSL2 (ENSCAFG00845025163) #28	LYZF2 (ENSCAFG00845025398)	LALBA (ENSCAFG00845025453) #29	OR5BS1P (ENSCAFG00845025525) #30	ENSCAFG00845025546	ENSCAFG00845025579 #31	ENSCAFG00845025608	ENSCAFG00845025649 #31	cOR8S14 (ENSCAFG00845025678) #31	cOR8S16 (ENSCAFG00845025719) #31
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.b #9	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34	ENSGT00940000166925
Panthera	ANCESTRAL SPECIES		ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.b #9	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B.e #31	ENSGT00940000162388.B.f #31	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00940000160203 #8	ENSGT00950000182825.A.a.b.a.b.a.a.b #9	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B.e #31	ENSGT00940000162388.B.f #31	ENSGT00940000159881.a.a.b #33	ENSGT00940000159881.a.b.b ##34	ENSGT00940000159881.a.a.a #34
lion	MODERN SPECIES	7	ENSPLOG00000011582 ##10	TUBA1A (ENSPLOG00000011490) ##10	ENSPLOG00000011430	TUBA1B (ENSPLOG00000011373) ##10	LMBR1L (ENSPLOG00000011098) #11	DHH (ENSPLOG00000011041) #12	RHEBL1 (ENSPLOG00000010984) #13	KMT2D (ENSPLOG00000010784) #14	PRKAG1 (ENSPLOG00000010608) #15	DDN (ENSPLOG00000010565) #16	WNT1 (ENSPLOG00000010521) #17	WNT10B (ENSPLOG00000010411) #18	ARF3 (ENSPLOG00000010349) #19	FKBP11 (ENSPLOG00000010230) #20	CCDC65 (ENSPLOG00000010162) #21	RND1 (ENSPLOG00000010124) #22	DDX23 (ENSPLOG00000010090) #23	CACNB3 (ENSPLOG00000009811) #24	TEX49 (ENSPLOG00000009719) #26	ADCY6 (ENSPLOG00000009398) #25	KANSL2 (ENSPLOG00000009219) #28	ENSPLOG00000009151	ENSPLOG00000009119	LALBA (ENSPLOG00000009064) #29	OR5BS1P (ENSPLOG00000009032) #30	ENSPLOG00000009003 #31	ENSPLOG00000008991 #33	ENSPLOG00000008974 ##34	OR8S1 (ENSPLOG00000008958) #34	ENSPLOG00000008937	C12orf54 (ENSPLOG00000008880) #36
leopard	MODERN SPECIES	77	TROAP (ENSPPRG00000023461)	PRPH (ENSPPRG00000022929) #8	ENSPPRG00000022793 #9	ENSPPRG00000000268 ##10	TUBA1B (ENSPPRG00000001738) ##10	LMBR1L (ENSPPRG00000002507) #11	DHH (ENSPPRG00000002928) #12	RHEBL1 (ENSPPRG00000003212) #13	PRKAG1 (ENSPPRG00000009137) #15	DDN (ENSPPRG00000009672) #16	WNT1 (ENSPPRG00000010414) #17	WNT10B (ENSPPRG00000011632) #18	ARF3 (ENSPPRG00000013155) #19	FKBP11 (ENSPPRG00000013896) #20	CCDC65 (ENSPPRG00000014354) #21	RND1 (ENSPPRG00000014543) #22	DDX23 (ENSPPRG00000015345) #23	CACNB3 (ENSPPRG00000022329) #24	ADCY6 (ENSPPRG00000002220) #25	TEX49 (ENSPPRG00000002478) #26	CCNT1 (ENSPPRG00000002985) #27	KANSL2 (ENSPPRG00000004003) #28	ENSPPRG00000004625	LALBA (ENSPPRG00000005035) #29	ENSPPRG00000020998 #31	ENSPPRG00000021009 #31	ENSPPRG00000021024 #33	ENSPPRG00000021040 ##34	OR8S1 (ENSPPRG00000021056) #34	ENSPPRG00000021065	ENSPPRG00000005898 #35
Tiger	MODERN SPECIES	14	TROAP (ENSPTIG00000021948)	PRPH (ENSPTIG00000019617) #8	ENSPTIG00000018218 #9	ENSPTIG00000016981 ##10	ENSPTIG00000007278 ##10	LMBR1L (ENSPTIG00000002708) #11	DHH (ENSPTIG00000020962) #12	RHEBL1 (ENSPTIG00000020473) #13	PRKAG1 (ENSPTIG00000008554) #15	DDN (ENSPTIG00000007916) #16	WNT1 (ENSPTIG00000007101) #17	WNT10B (ENSPTIG00000005637) #18	ARF3 (ENSPTIG00000002553) #19	FKBP11 (ENSPTIG00000021680) #20	CCDC65 (ENSPTIG00000021454) #21	RND1 (ENSPTIG00000020347) #22	DDX23 (ENSPTIG00000018873) #23	CACNB3 (ENSPTIG00000014703) #24	ADCY6 (ENSPTIG00000009376) #25	TEX49 (ENSPTIG00000007788) #26	CCNT1 (ENSPTIG00000002066) #27	KANSL2 (ENSPTIG00000018738) #28	ENSPTIG00000017690	LALBA (ENSPTIG00000016605) #29	ENSPTIG00000000424 #31	ENSPTIG00000000411 #31	OR8S1 (ENSPTIG00000000392) #34	C12orf54 (ENSPTIG00000015156) #36	ENSPTIG00000000355 ##37	ZNF641 (ENSPTIG00000013144)	ENSPTIG00000000286
Cat	MODERN SPECIES	238	PRPH (ENSFCAG00000014769) #8	TUBA1C (ENSFCAG00000037882) ##10	ENSFCAG00000014767	TUBA1A (ENSFCAG00000038056) #10	LMBR1L (ENSFCAG00000000098) #11	DHH (ENSFCAG00000043756) #12	RHEBL1 (ENSFCAG00000000096) #13	KMT2D (ENSFCAG00000000093) #14	PRKAG1 (ENSFCAG00000000091) #15	DDN (ENSFCAG00000000090) #16	WNT1 (ENSFCAG00000000089) #17	WNT10B (ENSFCAG00000030007) #18	ARF3 (ENSFCAG00000037304) #19	FKBP11 (ENSFCAG00000035568) #20	CCDC65 (ENSFCAG00000000085) #21	RND1 (ENSFCAG00000000084) #22	DDX23 (ENSFCAG00000000082) #23	CACNB3 (ENSFCAG00000000080) #24	TEX49 (ENSFCAG00000022110) #26	ADCY6 (ENSFCAG00000000079) #25	ENSFCAG00000043415 #27	KANSL2 (ENSFCAG00000029449) #28	ENSFCAG00000034992	LALBA (ENSFCAG00000050644) #29	ENSFCAG00000026779 #33	ENSFCAG00000023498 ##34	ENSFCAG00000026209 ##34	ENSFCAG00000031127 #33	ENSFCAG00000026373 ##37	OR8S1 (ENSFCAG00000041999) #34	ENSFCAG00000034432
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000160203 #8	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.b #32	ENSGT00940000159881.a.a.a #34	ENSGT00390000014843 #36	ENSGT00940000162202.A ##37	ENSGT00940000162202.B #37
Equus	ANCESTRAL SPECIES	16	ENSGT00940000160203 #8	ENSGT00940000154457.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000153832.f.y	ENSGT00940000161726 #29	ENSGT00940000163803.e #30	ENSGT00940000162388.B #31	ENSGT00940000162388.C.b #32	ENSGT00940000166925.b	ENSGT00940000159881.a.a.a #34	ENSGT00980000199472 #35	ENSGT00390000014843 #36
Donkey	MODERN SPECIES	14	PRPH (ENSEASG00005001134) #8	TUBA1C (ENSEASG00005001123) ##10	ENSEASG00005027053 ##10	TUBA1B (ENSEASG00005029815) ##10	LMBR1L (ENSEASG00005001084) #11	DHH (ENSEASG00005027549) #12	RHEBL1 (ENSEASG00005001042) #13	KMT2D (ENSEASG00005000816) #14	PRKAG1 (ENSEASG00005000627) #15	DDN (ENSEASG00005038212) #16	WNT1 (ENSEASG00005000530) #17	WNT10B (ENSEASG00005000528) #18	ARF3 (ENSEASG00005032704) #19	FKBP11 (ENSEASG00005037660) #20	CCDC65 (ENSEASG00005000473) #21	RND1 (ENSEASG00005000462) #22	DDX23 (ENSEASG00005000455) #23	CACNB3 (ENSEASG00005000426) #24	ADCY6 (ENSEASG00005000395) #25	TEX49 (ENSEASG00005000382) #26	CCNT1 (ENSEASG00005000368) #27	KANSL2 (ENSEASG00005000346) #28	ENSEASG00005000118 #29	ENSEASG00005000318	OR5BS1P (ENSEASG00005032536) #30	ENSEASG00005024483 #31	ENSEASG00005033241 #32	ENSEASG00005023527	ENSEASG00005031846	ENSEASG00005023526	OR8S1 (ENSEASG00005028324) #34
Horse	MODERN SPECIES	27	TROAP (ENSECAG00000017926)	PRPH (ENSECAG00000010432) #8	TUBA1A (ENSECAG00000030778) ##10	TUBA1B (ENSECAG00000059551) ##10	ENSECAG00000033690	LMBR1L (ENSECAG00000011362) #11	DHH (ENSECAG00000010603) #12	RHEBL1 (ENSECAG00000001442) #13	KMT2D (ENSECAG00000017946) #14	PRKAG1 (ENSECAG00000011134) #15	DDN (ENSECAG00000007971) #16	WNT1 (ENSECAG00000009064) #17	WNT10B (ENSECAG00000008298) #18	FKBP11 (ENSECAG00000006658) #19	CCDC65 (ENSECAG00000022789) #21	RND1 (ENSECAG00000020971) #22	DDX23 (ENSECAG00000016681) #23	CACNB3 (ENSECAG00000012018) #24	ADCY6 (ENSECAG00000022288) #25	CCNT1 (ENSECAG00000015768) #27	KANSL2 (ENSECAG00000013540) #28	ENSECAG00000010121	LALBA (ENSECAG00000001401) #29	ENSECAG00000034026 #30	OR8S15 (ENSECAG00000028893) ##34	OR8S34 (ENSECAG00000047119) ##37	OR8S33 (ENSECAG00000052992)	OR8S24 (ENSECAG00000045091)	ENSECAG00000050123	ENSECAG00000037359 #35	C12orf54 (ENSECAG00000039802) #36
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000154457.a.b	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.s.a ##15	ENSGT00950000183019.f.b.a.t #15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162202.A ##37	ENSGT00940000162121	ENSGT00730000111596	ENSGT01100000263574.a	ENSGT00390000002978	ENSGT00940000159366
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00950000182825.A.a.b.a.b.a.b.b #10	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##10	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b ##10	ENSGT00390000007809.a #11	ENSGT00940000161132 #12	ENSGT00940000161665 #13	ENSGT00940000156707 #14	ENSGT00950000183019.f.b.a.t #15	ENSGT00950000183019.f.b.a.s.a ##15	ENSGT00390000016495 #16	ENSGT00940000160329 #17	ENSGT00940000160653 #18	ENSGT00950000183080.a.a #19	ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24	ENSGT00940000155687 #25	ENSGT00390000010327 #26	ENSGT00940000159544 #27	ENSGT00940000155808 #28	ENSGT00940000165147	ENSGT00940000161726 #29	ENSGT00940000163803 #30	ENSGT00940000162202.A ##37	ENSGT00940000162121	ENSGT00730000111596	ENSGT00390000002978	ENSGT00940000159366	ENSGT00940000155440.d
Greater horseshoe bat	MODERN SPECIES	1	TROAP (ENSRFEG00010010867)	PRPH (ENSRFEG00010010768) #8	ENSRFEG00010010573	TUBA1B (ENSRFEG00010010426) ##10	LMBR1L (ENSRFEG00010010270) #11	DHH (ENSRFEG00010010213) #12	ENSRFEG00010010186	ENSRFEG00010009959 #14	ENSRFEG00010009659 ##15	DDN (ENSRFEG00010009634) #16	WNT1 (ENSRFEG00010009601) #17	WNT10B (ENSRFEG00010009503) #18	FKBP11 (ENSRFEG00010009367) #20	CCDC65 (ENSRFEG00010009326) #21	ENSRFEG00010009293	RND1 (ENSRFEG00010009261) #22	DDX23 (ENSRFEG00010009126) #23	CACNB3 (ENSRFEG00010008761) #24	ADCY6 (ENSRFEG00010008619) #25	TEX49 (ENSRFEG00010008549) #26	CCNT1 (ENSRFEG00010008442) #27	ENSRFEG00010008258 #28	ENSRFEG00010008162	LALBA (ENSRFEG00010008073) #29	OR5BS1P (ENSRFEG00010008042) #30	ENSRFEG00010008030 ##37	ZNF641 (ENSRFEG00010007923)	ENSRFEG00010007885	CCDC184 (ENSRFEG00010007804)	ASB8 (ENSRFEG00010007697)	PFKM (ENSRFEG00010007343)
Microbat	MODERN SPECIES	1028	C1QL4 (ENSMLUG00000022468)	TROAP (ENSMLUG00000004347)	PRPH (ENSMLUG00000009808) #8	ENSMLUG00000024840 #10	TUBA1A (ENSMLUG00000010845) ##10	TUBA1B (ENSMLUG00000002622) ##10	DHH (ENSMLUG00000008353) #12	RHEBL1 (ENSMLUG00000008343) #13	KMT2D (ENSMLUG00000011179) #14	PRKAG1 (ENSMLUG00000011156) #15	WNT1 (ENSMLUG00000023725) #17	WNT10B (ENSMLUG00000011105) #18	ARF3 (ENSMLUG00000029846) #19	FKBP11 (ENSMLUG00000011084) #20	CCDC65 (ENSMLUG00000011073) #21	RND1 (ENSMLUG00000011066) #22	ENSMLUG00000011033 #23	CACNB3 (ENSMLUG00000010986) #24	ADCY6 (ENSMLUG00000010943) #25	TEX49 (ENSMLUG00000010932) #26	CCNT1 (ENSMLUG00000010910) #27	KANSL2 (ENSMLUG00000012761) #28	ENSMLUG00000028552	ENSMLUG00000028621	ENSMLUG00000027828	LALBA (ENSMLUG00000010895) #29	OR5BS1P (ENSMLUG00000010889) #30	ENSMLUG00000022240 ##37	ENSMLUG00000027444	ZNF641 (ENSMLUG00000003695)	ENSMLUG00000003687
Megabat	MODERN SPECIES	2398																RND1 (ENSPVAG00000009824) #22	DDX23 (ENSPVAG00000009818) #23	CACNB3 (ENSPVAG00000009816) #24	ADCY6 (ENSPVAG00000009814) #25
Eulipotyphla	ANCESTRAL SPECIES	158														ENSGT00940000159521 #20	ENSGT00940000153804.B #21	ENSGT00940000158666 #22	ENSGT00940000155606.b #23	ENSGT00950000182837.b.a #24
Common shrew	MODERN SPECIES	4846															ENSSARG00000004603 #21	RND1 (ENSSARG00000004593) #22	DDX23 (ENSSARG00000004534) #23	CACNB3 (ENSSARG00000004502) #24
Hedgehog	MODERN SPECIES	10653																RND1 (ENSEEUG00000015869) #22