Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT01060000248892	ENSGT01100000263482.A.a.a.d.a.a.b ##33
Primates	ANCESTRAL SPECIES	3	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Mouse lemur	MODERN SPECIES	7	ENSMICG00000037781 #7	NF1 (ENSMICG00000002852) #8	OMG (ENSMICG00000002876) #9	RAB11FIP4 (ENSMICG00000002885) #10	COPRS (ENSMICG00000029453) #11	UTP6 (ENSMICG00000002632) #12	SUZ12 (ENSMICG00000002637) #13	CRLF3 (ENSMICG00000033044) #14	ATAD5 (ENSMICG00000003613) #15	TEFM (ENSMICG00000009936) #16	ADAP2 (ENSMICG00000003621) #17	RNF135 (ENSMICG00000005151) #18	RHOT1 (ENSMICG00000007771) #19	RHBDL3 (ENSMICG00000007783) #20	C17orf75 (ENSMICG00000007788) #21	ZNF207 (ENSMICG00000002395) #22	ENSMICG00000026860 #23	PSMD11 (ENSMICG00000011849) #24	CDK5R1 (ENSMICG00000042797) #25	MYO1D (ENSMICG00000011863) #26	TMEM98 (ENSMICG00000011888) #27	SPACA3 (ENSMICG00000043535) #28	ASIC2 (ENSMICG00000035781) #29	CCL2 (ENSMICG00000034682) #30	CCL8 (ENSMICG00000037888) #31	CCL13 (ENSMICG00000036035) #32	CCL1 (ENSMICG00000042374) #33	TMEM132E (ENSMICG00000003085) #34	CCT6B (ENSMICG00000035976) #35	LIG3 (ENSMICG00000006814) #36	RFFL (ENSMICG00000006829) #37
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Greater bamboo lemur	MODERN SPECIES	167	EVI2A (ENSPSMG00000015849)	RAB11FIP4 (ENSPSMG00000015899) #10	ENSPSMG00000015918	COPRS (ENSPSMG00000015946) #11	UTP6 (ENSPSMG00000016038) #12	SUZ12 (ENSPSMG00000016122) #13	CRLF3 (ENSPSMG00000016147) #14	ATAD5 (ENSPSMG00000016178) #15	TEFM (ENSPSMG00000016197) #16	ADAP2 (ENSPSMG00000016226) #17	RNF135 (ENSPSMG00000016233) #18	RHOT1 (ENSPSMG00000016604) #19	RHBDL3 (ENSPSMG00000016749) #20	ENSPSMG00000016756	C17orf75 (ENSPSMG00000016774) #21	ZNF207 (ENSPSMG00000016931) #22	PSMD11 (ENSPSMG00000016979) #24	CDK5R1 (ENSPSMG00000016985) #25	MYO1D (ENSPSMG00000017027) #26	TMEM98 (ENSPSMG00000017093) #27	SPACA3 (ENSPSMG00000017102) #28	ASIC2 (ENSPSMG00000017117) #29	CCL2 (ENSPSMG00000017119) #30	ENSPSMG00000017122 ##33	CCL11 (ENSPSMG00000017132) ##33	CCL8 (ENSPSMG00000017139) #31	CCL13 (ENSPSMG00000017153) #32	TMEM132E (ENSPSMG00000017176) #34	ENSPSMG00000017180	CCT6B (ENSPSMG00000017271) #35	ZNF830 (ENSPSMG00000017386)
Coquerels sifaka	MODERN SPECIES	400	WSB1 (ENSPCOG00000026459)	NF1 (ENSPCOG00000025474) #8	RAB11FIP4 (ENSPCOG00000027596) #10	ENSPCOG00000017944	COPRS (ENSPCOG00000016471) #11	UTP6 (ENSPCOG00000010224) #12	SUZ12 (ENSPCOG00000014564) #13	CRLF3 (ENSPCOG00000015459) #14	ATAD5 (ENSPCOG00000017323) #15	TEFM (ENSPCOG00000022322) #16	ADAP2 (ENSPCOG00000020468) #17	RNF135 (ENSPCOG00000022621) #18	ENSPCOG00000014537 #19	RHBDL3 (ENSPCOG00000027181) #20	C17orf75 (ENSPCOG00000028496) #21	ZNF207 (ENSPCOG00000020744) #22	PSMD11 (ENSPCOG00000020989) #24	CDK5R1 (ENSPCOG00000002073) #25	MYO1D (ENSPCOG00000015762) #26	TMEM98 (ENSPCOG00000020899) #27	SPACA3 (ENSPCOG00000018597) #28	ASIC2 (ENSPCOG00000025881) #29	CCL2 (ENSPCOG00000015709) #30	ENSPCOG00000009890	CCL11 (ENSPCOG00000013678) ##33	CCL8 (ENSPCOG00000003413) #31	CCL13 (ENSPCOG00000020576) #32	CCL1 (ENSPCOG00000027470) #33	TMEM132E (ENSPCOG00000014193) #34
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	227	EVI2B (ENSOGAG00000010069)	EVI2A (ENSOGAG00000033499)	ENSOGAG00000032163 #8	RAB11FIP4 (ENSOGAG00000016294) #10	COPRS (ENSOGAG00000004510) #11	UTP6 (ENSOGAG00000004511) #12	SUZ12 (ENSOGAG00000016923) #13	CRLF3 (ENSOGAG00000001185) #14	ATAD5 (ENSOGAG00000001186) #15	TEFM (ENSOGAG00000001190) #16	ADAP2 (ENSOGAG00000001192) #17	RNF135 (ENSOGAG00000001193) #18	RHOT1 (ENSOGAG00000001194) #19	RHBDL3 (ENSOGAG00000001197) #20	C17orf75 (ENSOGAG00000001198) #21	ENSOGAG00000001200 #22	PSMD11 (ENSOGAG00000015456) #24	CDK5R1 (ENSOGAG00000034547) #25	MYO1D (ENSOGAG00000015457) #26	TMEM98 (ENSOGAG00000015459) #27	SPACA3 (ENSOGAG00000025382) #28	ASIC2 (ENSOGAG00000015461) #29	CCL7 (ENSOGAG00000003894) ##33	CCL11 (ENSOGAG00000003893) ##33	ENSOGAG00000028610 ##33	CCL13 (ENSOGAG00000003892) #32	ENSOGAG00000003889 #33	TMEM132E (ENSOGAG00000008267) #34	CCT6B (ENSOGAG00000009862) #35	ZNF830 (ENSOGAG00000009870)	LIG3 (ENSOGAG00000009871) #36
Bushbaby	MODERN SPECIES	232			ENSOGAG00000032990	GPR101 (ENSOGAG00000006478)	ZIC3 (ENSOGAG00000011700)	ENSOGAG00000025744	ENSOGAG00000027112	FGF13 (ENSOGAG00000031744)	ENSOGAG00000030480	ENSOGAG00000029354	ENSOGAG00000028887	F9 (ENSOGAG00000000863)	MCF2 (ENSOGAG00000000864)	ATP11C (ENSOGAG00000002088)	ENSOGAG00000015306	ENSOGAG00000029856 #22	ENSOGAG00000033659	ENSOGAG00000030168	ENSOGAG00000034439	ENSOGAG00000031982	ENSOGAG00000028331	ENSOGAG00000034324	SOX3 (ENSOGAG00000025781)	ENSOGAG00000026459	ENSOGAG00000029605	ENSOGAG00000034583	LDOC1 (ENSOGAG00000034696)	ENSOGAG00000029867	ENSOGAG00000029270	SLITRK4 (ENSOGAG00000007373)
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT01030000234760
Tarsier	MODERN SPECIES	2201																ZNF207 (ENSTSYG00000003620) #22	PSMD11 (ENSTSYG00000012073) #24	CDK5R1 (ENSTSYG00000011930) #25	MYO1D (ENSTSYG00000011934) #26
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008
Hominoidea	ANCESTRAL SPECIES	27	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384.c.a #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008
Hominidae	ANCESTRAL SPECIES	20	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384.d #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008
Orangutan	MODERN SPECIES	8	EVI2A (ENSPPYG00000008150)	EVI2B (ENSPPYG00000008149)	OMG (ENSPPYG00000008148) #9	ENSPPYG00000008146	RNF135 (ENSPPYG00000008145) #18	ADAP2 (ENSPPYG00000008144) #17	TEFM (ENSPPYG00000008143) #16	ATAD5 (ENSPPYG00000039479) #15	CRLF3 (ENSPPYG00000008142) #14	ENSPPYG00000040619	ENSPPYG00000008155	RHOT1 (ENSPPYG00000008157) #19	ENSPPYG00000008158	RHBDL3 (ENSPPYG00000008159) #20	C17H17orf75 (ENSPPYG00000008160) #21	ZNF207 (ENSPPYG00000008161) #22	PSMD11 (ENSPPYG00000008162) #24	CDK5R1 (ENSPPYG00000008163) #25	MYO1D (ENSPPYG00000008164) #26	TMEM98 (ENSPPYG00000008166) #27	SPACA3 (ENSPPYG00000008867) #28	ASIC2 (ENSPPYG00000008167) #29	CCL2 (ENSPPYG00000008169) #30	CCL7 (ENSPPYG00000008170) ##33	CCL11 (ENSPPYG00000008171) ##33	CCL8 (ENSPPYG00000029480) #31	CCL13 (ENSPPYG00000036667) #32	CCL1 (ENSPPYG00000041084) #33	TMEM132E (ENSPPYG00000008862) #34	CCT6B (ENSPPYG00000008174) #35	ZNF830 (ENSPPYG00000008175)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384.d #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b.g.a #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00910000148183	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	18	ENSGGOG00000025742	EVI2B (ENSGGOG00000005182)	EVI2A (ENSGGOG00000024807)	NF1 (ENSGGOG00000006983) #8	RAB11FIP4 (ENSGGOG00000001071) #10	COPRS (ENSGGOG00000007292) #11	UTP6 (ENSGGOG00000013569) #12	SUZ12 (ENSGGOG00000010352) #13	ENSGGOG00000026947	ENSGGOG00000043944	ENSGGOG00000037185	RHOT1 (ENSGGOG00000006643) #19	ENSGGOG00000037024	RHBDL3 (ENSGGOG00000010876) #20	C17orf75 (ENSGGOG00000002514) #21	ENSGGOG00000024003 #22	PSMD11 (ENSGGOG00000001054) #24	CDK5R1 (ENSGGOG00000040028) #25	MYO1D (ENSGGOG00000000276) #26	TMEM98 (ENSGGOG00000013333) #27	SPACA3 (ENSGGOG00000001125) #28	ENSGGOG00000040939 #29	ENSGGOG00000041068 ##29	CCL2 (ENSGGOG00000016211) #30	CCL7 (ENSGGOG00000004500) ##33	ENSGGOG00000044068 ##33	ENSGGOG00000044171 ##33	CCL8 (ENSGGOG00000004504) #31	CCL13 (ENSGGOG00000002887) #32	CCL1 (ENSGGOG00000028387) #33	TMEM132E (ENSGGOG00000015325) #34
Gorilla	MODERN SPECIES	15	DYTN (ENSGGOG00000027242)	FAM237A (ENSGGOG00000037017)	ADAM23 (ENSGGOG00000012509)	ENSGGOG00000024971	ZDBF2 (ENSGGOG00000023142)	ENSGGOG00000042195	EEF1B2 (ENSGGOG00000007002)	NDUFS1 (ENSGGOG00000001513)	INO80D (ENSGGOG00000015570)	NRP2 (ENSGGOG00000009537)	PARD3B (ENSGGOG00000034911)	ICOS (ENSGGOG00000014097)	CTLA4 (ENSGGOG00000007961)	ENSGGOG00000039900	CD28 (ENSGGOG00000041735)	ENSGGOG00000023735 #22	RAPH1 (ENSGGOG00000016399)	ABI2 (ENSGGOG00000016384)	CYP20A1 (ENSGGOG00000007044)	NBEAL1 (ENSGGOG00000015453)	ENSGGOG00000036442	WDR12 (ENSGGOG00000026073)	ICA1L (ENSGGOG00000017038)	ENSGGOG00000016194	ENSGGOG00000014813	BMPR2 (ENSGGOG00000010989)	ENSGGOG00000042085	ENSGGOG00000014545	ENSGGOG00000026439	ENSGGOG00000007480	ENSGGOG00000027043
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384.c.a #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b.g.a #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00910000148183	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008	ENSGT00940000158479 #34
Human	MODERN SPECIES	8	ADAP2 (ENSG00000184060) #17	RNF135 (ENSG00000181481) #18	NF1 (ENSG00000196712) #8	OMG (ENSG00000126861) #9	EVI2B (ENSG00000185862)	ENSG00000265118	EVI2A (ENSG00000126860)	RAB11FIP4 (ENSG00000131242) #10	COPRS (ENSG00000172301) #11	UTP6 (ENSG00000108651) #12	SUZ12 (ENSG00000178691) #13	LRRC37B (ENSG00000185158)	RHOT1 (ENSG00000126858) #19	RHBDL3 (ENSG00000141314) #20	C17orf75 (ENSG00000108666) #21	ZNF207 (ENSG00000010244) #22	PSMD11 (ENSG00000108671) #24	CDK5R1 (ENSG00000176749) #25	MYO1D (ENSG00000176658) #26	H2BN1 (ENSG00000290320)	TMEM98 (ENSG00000006042) #27	SPACA3 (ENSG00000141316) #28	ASIC2 (ENSG00000108684) #29	CCL2 (ENSG00000108691) #30	CCL7 (ENSG00000108688) ##33	CCL11 (ENSG00000172156) ##33	CCL8 (ENSG00000108700) #31	CCL13 (ENSG00000181374) #32	CCL1 (ENSG00000108702) #33	TMEM132E (ENSG00000181291) #34	CCT6B (ENSG00000132141) #35
Pan	ANCESTRAL SPECIES	3	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384.d #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b.g.a #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00910000148183	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	8	NF1 (ENSPTRG00000008970) #8	RAB11FIP4 (ENSPTRG00000008974) #10	COPRS (ENSPTRG00000008976) #11	UTP6 (ENSPTRG00000008977) #12	SUZ12 (ENSPTRG00000008980) #13	CRLF3 (ENSPTRG00000008963) #14	ATAD5 (ENSPTRG00000008964) #15	TEFM (ENSPTRG00000008965) #16	ADAP2 (ENSPTRG00000008966) #17	RNF135 (ENSPTRG00000008967) #18	ENSPTRG00000050077	RHOT1 (ENSPTRG00000008986) #19	ENSPTRG00000051245	RHBDL3 (ENSPTRG00000008987) #20	C17H17orf75 (ENSPTRG00000008988) #21	ZNF207 (ENSPTRG00000008989) #22	PSMD11 (ENSPTRG00000008990) #24	CDK5R1 (ENSPTRG00000030892) #25	MYO1D (ENSPTRG00000008991) #26	TMEM98 (ENSPTRG00000008993) #27	SPACA3 (ENSPTRG00000049269) #28	ASIC2 (ENSPTRG00000008996) #29	CCL2 (ENSPTRG00000008999) #30	CCL7 (ENSPTRG00000009000) ##33	CCL11 (ENSPTRG00000048230) ##33	CCL8 (ENSPTRG00000009002) #31	CCL13 (ENSPTRG00000043899) #32	CCL1 (ENSPTRG00000009004) #33	TMEM132E (ENSPTRG00000009005) #34	CCT6B (ENSPTRG00000023221) #35	ZNF830 (ENSPTRG00000009007)
Chimpanzee	MODERN SPECIES	15	DYTN (ENSPTRG00000042355)	FAM237A (ENSPTRG00000045763)	ADAM23 (ENSPTRG00000012846)	ZDBF2 (ENSPTRG00000029052)	ENSPTRG00000052002	CMKLR2 (ENSPTRG00000012844)	EEF1B2 (ENSPTRG00000049619)	NDUFS1 (ENSPTRG00000012842)	INO80D (ENSPTRG00000012841)	NRP2 (ENSPTRG00000012839)	PARD3B (ENSPTRG00000012838)	ICOS (ENSPTRG00000012837)	CTLA4 (ENSPTRG00000044793)	ENSPTRG00000051964	CD28 (ENSPTRG00000012833)	ENSPTRG00000043246 #22	RAPH1 (ENSPTRG00000012831)	ABI2 (ENSPTRG00000012830)	ENSPTRG00000012829	NBEAL1 (ENSPTRG00000012828)	CARF (ENSPTRG00000012824)	WDR12 (ENSPTRG00000012823)	ICA1L (ENSPTRG00000012822)	ENSPTRG00000044806	ENSPTRG00000040928	FAM117B (ENSPTRG00000012821)	BMPR2 (ENSPTRG00000029076)	ENSPTRG00000047517	NOP58 (ENSPTRG00000012818)	ENSPTRG00000012817	ENSPTRG00000049039
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	8	NF1 (ENSPPAG00000030406) #8	RAB11FIP4 (ENSPPAG00000036623) #10	ENSPPAG00000039082 #11	UTP6 (ENSPPAG00000038089) #12	CRLF3 (ENSPPAG00000037920) #14	ATAD5 (ENSPPAG00000030438) #15	TEFM (ENSPPAG00000039403) #16	ADAP2 (ENSPPAG00000027684) #17	ENSPPAG00000031531 #18	ENSPPAG00000022296	ENSPPAG00000012149	RHOT1 (ENSPPAG00000027700) #19	ENSPPAG00000034448	RHBDL3 (ENSPPAG00000027407) #20	C17orf75 (ENSPPAG00000028763) #21	ENSPPAG00000032098 #22	PSMD11 (ENSPPAG00000044105) #24	CDK5R1 (ENSPPAG00000030747) #25	MYO1D (ENSPPAG00000036175) #26	TMEM98 (ENSPPAG00000037372) #27	SPACA3 (ENSPPAG00000039834) #28	ENSPPAG00000038474	ENSPPAG00000035274 #29	CCL2 (ENSPPAG00000033176) #30	CCL7 (ENSPPAG00000029310) ##33	CCL11 (ENSPPAG00000041920) ##33	CCL8 (ENSPPAG00000039853) #31	CCL13 (ENSPPAG00000041440) #32	CCL1 (ENSPPAG00000004362) #33	ENSPPAG00000041711	TMEM132E (ENSPPAG00000034783) #34
Bonobo	MODERN SPECIES	15	ENSPPAG00000031338	DYTN (ENSPPAG00000008787)	FAM237A (ENSPPAG00000028915)	ADAM23 (ENSPPAG00000030147)	ZDBF2 (ENSPPAG00000038901)	ENSPPAG00000031391	ENSPPAG00000033754	NDUFS1 (ENSPPAG00000032284)	INO80D (ENSPPAG00000017120)	ENSPPAG00000040957	NRP2 (ENSPPAG00000041062)	PARD3B (ENSPPAG00000033958)	ICOS (ENSPPAG00000037117)	CTLA4 (ENSPPAG00000041661)	CD28 (ENSPPAG00000034998)	ENSPPAG00000032675 #22	RAPH1 (ENSPPAG00000024317)	ABI2 (ENSPPAG00000030582)	CYP20A1 (ENSPPAG00000040724)	NBEAL1 (ENSPPAG00000040934)	CARF (ENSPPAG00000042960)	ENSPPAG00000033697	ICA1L (ENSPPAG00000037623)	ENSPPAG00000027947	FAM117B (ENSPPAG00000041596)	BMPR2 (ENSPPAG00000017269)	ENSPPAG00000043823	NOP58 (ENSPPAG00000036626)	ENSPPAG00000039520	ENSPPAG00000039551	ENSPPAG00000036444
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	4	FOXN2 (ENSNLEG00000008649)	MSH6 (ENSNLEG00000008521)	FBXO11 (ENSNLEG00000008539)	ENSNLEG00000029761	MSH2 (ENSNLEG00000008421)	EPCAM (ENSNLEG00000008380)	ENSNLEG00000035354	CRLF3 (ENSNLEG00000005850) #14	ATAD5 (ENSNLEG00000005853) #15	TEFM (ENSNLEG00000005875) #16	ADAP2 (ENSNLEG00000005879) #17	ENSNLEG00000030868	RHOT1 (ENSNLEG00000005886) #19	ENSNLEG00000005933 #20	C17orf75 (ENSNLEG00000031662) #21	ENSNLEG00000005954 #22	PSMD11 (ENSNLEG00000005992) #24	MYO1D (ENSNLEG00000006028) #26	ENSNLEG00000028584 #27	SPACA3 (ENSNLEG00000014819) #28	ENSNLEG00000006041 #29	ENSNLEG00000032286	CA4 (ENSNLEG00000000324)	ENSNLEG00000000355	ENSNLEG00000000340	CHCT1 (ENSNLEG00000000357)	ENSNLEG00000033351	ENSNLEG00000035218	APPBP2 (ENSNLEG00000000368)	PPM1D (ENSNLEG00000000379)	BCAS3 (ENSNLEG00000000387)
Gibbon	MODERN SPECIES	14	DYTN (ENSNLEG00000007113)	FAM237A (ENSNLEG00000007112)	ADAM23 (ENSNLEG00000007102)	ZDBF2 (ENSNLEG00000007100)	ENSNLEG00000033131	ENSNLEG00000007098	NDUFS1 (ENSNLEG00000007090)	INO80D (ENSNLEG00000032256)	NRP2 (ENSNLEG00000007071)	ENSNLEG00000036209	ENSNLEG00000007066	ICOS (ENSNLEG00000007065)	CTLA4 (ENSNLEG00000007059)	CD28 (ENSNLEG00000007057)	ENSNLEG00000029125	ENSNLEG00000035533 #22	ENSNLEG00000030127	RAPH1 (ENSNLEG00000007048)	ENSNLEG00000007043	CYP20A1 (ENSNLEG00000035097)	ENSNLEG00000029450	NBEAL1 (ENSNLEG00000007032)	CARF (ENSNLEG00000007026)	WDR12 (ENSNLEG00000007018)	ICA1L (ENSNLEG00000007012)	ENSNLEG00000027717	ENSNLEG00000029928	ENSNLEG00000007009	BMPR2 (ENSNLEG00000007004)	ENSNLEG00000031345	NOP58 (ENSNLEG00000007000)
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Rhinopithecus	ANCESTRAL SPECIES	125	ENSGT00940000155671.q.a	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00390000006922.m.b.a.c.a	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Black snub-nosed monkey	MODERN SPECIES	1024	ENSRBIG00000031245	COPRS (ENSRBIG00000040651) #11	UTP6 (ENSRBIG00000020822) #12	SUZ12 (ENSRBIG00000035000) #13	CRLF3 (ENSRBIG00000040685) #14	ENSRBIG00000043638	ATAD5 (ENSRBIG00000028803) #15	TEFM (ENSRBIG00000044300) #16	ADAP2 (ENSRBIG00000031583) #17	RNF135 (ENSRBIG00000032245) #18	ENSRBIG00000037919	RHOT1 (ENSRBIG00000028432) #19	ENSRBIG00000010676	RHBDL3 (ENSRBIG00000037522) #20	C17orf75 (ENSRBIG00000036493) #21	ZNF207 (ENSRBIG00000030664) #22	PSMD11 (ENSRBIG00000031642) #24	CDK5R1 (ENSRBIG00000029772) #25	MYO1D (ENSRBIG00000030384) #26	TMEM98 (ENSRBIG00000033509) #27	SPACA3 (ENSRBIG00000031083) #28	ENSRBIG00000011050	ASIC2 (ENSRBIG00000039882) #29	CCL2 (ENSRBIG00000039932) #30	CCL7 (ENSRBIG00000035832) ##33	CCL11 (ENSRBIG00000043002) ##33	CCL8 (ENSRBIG00000040497) #31	CCL13 (ENSRBIG00000037720) #32	CCL1 (ENSRBIG00000032049) #33	TMEM132E (ENSRBIG00000034726) #34	ZNF830 (ENSRBIG00000029713)
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1659						ENSRROG00000039704	ATAD5 (ENSRROG00000040978) #15	TEFM (ENSRROG00000030422) #16	ADAP2 (ENSRROG00000033024) #17	RNF135 (ENSRROG00000043224) #18	ENSRROG00000043873	RHOT1 (ENSRROG00000041054) #19	ENSRROG00000009075	RHBDL3 (ENSRROG00000032686) #20	C17orf75 (ENSRROG00000035975) #21	ENSRROG00000037743 #22	PSMD11 (ENSRROG00000032071) #24	CDK5R1 (ENSRROG00000026898) #25	MYO1D (ENSRROG00000036278) #26	TMEM98 (ENSRROG00000044185) #27	SPACA3 (ENSRROG00000036513) #28	ASIC2 (ENSRROG00000036757) #29
Golden snub-nosed monkey	MODERN SPECIES	2758			ADAM23 (ENSRROG00000036437)	ZDBF2 (ENSRROG00000032109)	ENSRROG00000038360	CMKLR2 (ENSRROG00000015659)	ENSRROG00000041925	NDUFS1 (ENSRROG00000033953)	INO80D (ENSRROG00000003571)	NRP2 (ENSRROG00000040911)	PARD3B (ENSRROG00000013717)	ICOS (ENSRROG00000038288)	CTLA4 (ENSRROG00000028565)	ENSRROG00000034095	CD28 (ENSRROG00000043826)	ENSRROG00000034411 #22	ENSRROG00000006311	RAPH1 (ENSRROG00000010278)	ABI2 (ENSRROG00000040959)	CYP20A1 (ENSRROG00000040044)	NBEAL1 (ENSRROG00000015491)	CARF (ENSRROG00000045180)
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00390000003008	ENSGT00940000158479 #34
Vervet Monkey	MODERN SPECIES	7	RAB11FIP4 (ENSCSAG00000006613) #10	ENSCSAG00000006606	COPRS (ENSCSAG00000006603) #11	UTP6 (ENSCSAG00000006595) #12	SUZ12 (ENSCSAG00000006586) #13	CRLF3 (ENSCSAG00000006577) #14	ATAD5 (ENSCSAG00000006541) #15	TEFM (ENSCSAG00000006512) #16	ADAP2 (ENSCSAG00000006503) #17	RNF135 (ENSCSAG00000006495) #18	ENSCSAG00000000559	RHOT1 (ENSCSAG00000006465) #19	RHBDL3 (ENSCSAG00000006421) #20	ENSCSAG00000000558	C17orf75 (ENSCSAG00000006408) #21	ZNF207 (ENSCSAG00000006379) #22	PSMD11 (ENSCSAG00000006373) #24	ENSCSAG00000000557	CDK5R1 (ENSCSAG00000006370) #25	MYO1D (ENSCSAG00000006369) #26	TMEM98 (ENSCSAG00000006365) #27	SPACA3 (ENSCSAG00000006362) #28	ASIC2 (ENSCSAG00000006357) #29	CCL2 (ENSCSAG00000006354) #30	CCL11 (ENSCSAG00000006352) ##33	CCL8 (ENSCSAG00000006350) #31	CCL13 (ENSCSAG00000006348) #32	CCL1 (ENSCSAG00000006347) #33	ENSCSAG00000006343	TMEM132E (ENSCSAG00000006340) #34	CCT6B (ENSCSAG00000006334) #35
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00910000148586	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481.m #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00440000033742.a.b #10	ENSGT00910000148586	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.b.a.a.a.a.b.c.b	ENSGT01040000240755.A.b.a.a	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481.m #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Crab-eating macaque	MODERN SPECIES	7	ENSMFAG00000047784	ENSMFAG00000064943	ENSMFAG00000063616	COPRS (ENSMFAG00000030359) #11	UTP6 (ENSMFAG00000038842) #12	SUZ12 (ENSMFAG00000040091) #13	CRLF3 (ENSMFAG00000044393) #14	ATAD5 (ENSMFAG00000039082) #15	ENSMFAG00000063937	TEFM (ENSMFAG00000001938) #16	ENSMFAG00000059379 #17	RNF135 (ENSMFAG00000002510) #18	RHOT1 (ENSMFAG00000034504) #19	C17orf75 (ENSMFAG00000000431) #21	ENSMFAG00000048628 #21	ZNF207 (ENSMFAG00000001904) #22	RHBDL3 (ENSMFAG00000041020) #20	ENSMFAG00000057242	PSMD11 (ENSMFAG00000039747) #24	ENSMFAG00000048750 #25	MYO1D (ENSMFAG00000033021) #26	ENSMFAG00000055833	TMEM98 (ENSMFAG00000000693) #27	SPACA3 (ENSMFAG00000001727) #28	ASIC2 (ENSMFAG00000007668) #29	ENSMFAG00000059870	ENSMFAG00000053189	CCL2 (ENSMFAG00000053406) #30	CCL7 (ENSMFAG00000031903) ##33	CCL11 (ENSMFAG00000060137) ##33	CCL8 (ENSMFAG00000041874) #31
Rhesus	MODERN SPECIES	7	ENSMMUG00000051206	ENSMMUG00000058961	COPRS (ENSMMUG00000057946) #11	UTP6 (ENSMMUG00000020403) #12	SUZ12 (ENSMMUG00000001116) #13	CRLF3 (ENSMMUG00000009069) #14	ATAD5 (ENSMMUG00000040177) #15	TEFM (ENSMMUG00000052827) #16	ADAP2 (ENSMMUG00000009077) #17	RNF135 (ENSMMUG00000007967) #18	RHOT1 (ENSMMUG00000018222) #19	RHBDL3 (ENSMMUG00000003158) #20	ENSMMUG00000054531	ENSMMUG00000058431	C16H17orf75 (ENSMMUG00000022379) #21	ZNF207 (ENSMMUG00000016875) #22	PSMD11 (ENSMMUG00000018962) #24	CDK5R1 (ENSMMUG00000009548) #25	MYO1D (ENSMMUG00000014689) #26	ENSMMUG00000059292	TMEM98 (ENSMMUG00000022356) #27	SPACA3 (ENSMMUG00000011411) #28	ASIC2 (ENSMMUG00000011413) #29	ENSMMUG00000002324	ENSMMUG00000062894	CCL2 (ENSMMUG00000000288) #30	CCL7 (ENSMMUG00000009782) ##33	CCL11 (ENSMMUG00000064793) ##33	ENSMMUG00000058490	CCL8 (ENSMMUG00000009784) #31	CCL13 (ENSMMUG00000009785) #32
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	116	RAB11FIP4 (ENSMNEG00000035170) #10	ENSMNEG00000018196	ENSMNEG00000000618	COPRS (ENSMNEG00000042239) #11	UTP6 (ENSMNEG00000039480) #12	SUZ12 (ENSMNEG00000030008) #13	ENSMNEG00000032660 #14	ATAD5 (ENSMNEG00000041128) #15	TEFM (ENSMNEG00000037622) #16	ENSMNEG00000010597	ADAP2 (ENSMNEG00000033418) #17	RNF135 (ENSMNEG00000037190) #18	RHOT1 (ENSMNEG00000043417) #19	RHBDL3 (ENSMNEG00000024854) #20	C17orf75 (ENSMNEG00000043612) #21	ENSMNEG00000041308 #22	ENSMNEG00000044062	PSMD11 (ENSMNEG00000032399) #24	CDK5R1 (ENSMNEG00000024350) #25	MYO1D (ENSMNEG00000043394) #26	TMEM98 (ENSMNEG00000041204) #27	SPACA3 (ENSMNEG00000033069) #28	ENSMNEG00000045019 #29	ENSMNEG00000026560	ENSMNEG00000030615	ENSMNEG00000012290	ENSMNEG00000006241 ##29	CCL2 (ENSMNEG00000038921) #30	CCL7 (ENSMNEG00000036187) ##33	CCL11 (ENSMNEG00000028877) ##33	CCL8 (ENSMNEG00000040396) #31
Pig-tailed macaque	MODERN SPECIES	409	DYTN (ENSMNEG00000038040)	FAM237A (ENSMNEG00000032870)	ADAM23 (ENSMNEG00000027959)	ENSMNEG00000028225	ZDBF2 (ENSMNEG00000031863)	ENSMNEG00000030060	NDUFS1 (ENSMNEG00000032822)	INO80D (ENSMNEG00000032459)	NRP2 (ENSMNEG00000039082)	ENSMNEG00000031020	PARD3B (ENSMNEG00000040103)	ICOS (ENSMNEG00000029598)	CTLA4 (ENSMNEG00000043834)	ENSMNEG00000030427	CD28 (ENSMNEG00000033642)	ENSMNEG00000036304 #22	RAPH1 (ENSMNEG00000030823)	ABI2 (ENSMNEG00000028519)	CYP20A1 (ENSMNEG00000045164)	NBEAL1 (ENSMNEG00000044041)	CARF (ENSMNEG00000033105)	ENSMNEG00000027411	ICA1L (ENSMNEG00000039428)	FAM117B (ENSMNEG00000033073)	BMPR2 (ENSMNEG00000032368)	NOP58 (ENSMNEG00000012760)	ENSMNEG00000041929	KIAA2012 (ENSMNEG00000030605)	ENSMNEG00000029108	FZD7 (ENSMNEG00000026832)	CDK15 (ENSMNEG00000043552)
Cercopithecinae_b	ANCESTRAL SPECIES	33	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Olive baboon	MODERN SPECIES	8	EVI2B (ENSPANG00000023110)	RAB11FIP4 (ENSPANG00000023111) #10	COPRS (ENSPANG00000023112) #11	UTP6 (ENSPANG00000023113) #12	SUZ12 (ENSPANG00000023097) #13	CRLF3 (ENSPANG00000023099) #14	ATAD5 (ENSPANG00000023096) #15	TEFM (ENSPANG00000023094) #16	ADAP2 (ENSPANG00000023090) #17	ENSPANG00000035965	RNF135 (ENSPANG00000023083) #18	RHOT1 (ENSPANG00000023084) #19	RHBDL3 (ENSPANG00000023087) #20	ENSPANG00000016500	C17orf75 (ENSPANG00000023088) #21	ZNF207 (ENSPANG00000023027) #22	PSMD11 (ENSPANG00000023029) #24	ENSPANG00000013718	CDK5R1 (ENSPANG00000016542) #25	MYO1D (ENSPANG00000023030) #26	TMEM98 (ENSPANG00000023031) #27	SPACA3 (ENSPANG00000023033) #28	ASIC2 (ENSPANG00000023034) #29	CCL2 (ENSPANG00000051132) #30	CCL7 (ENSPANG00000038856) ##33	CCL11 (ENSPANG00000023037) ##33	CCL8 (ENSPANG00000044922) #31	CCL13 (ENSPANG00000023023) #32	CCL1 (ENSPANG00000045394) #33	TMEM132E (ENSPANG00000023021) #34	CCT6B (ENSPANG00000023018) #35
Cercopithecinae_d	ANCESTRAL SPECIES	98	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062.m #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Drill	DUPLICATION
Drill	MODERN SPECIES	1098							ATAD5 (ENSMLEG00000000078) #15	TEFM (ENSMLEG00000042473) #16	ADAP2 (ENSMLEG00000034044) #17	ENSMLEG00000017585	RNF135 (ENSMLEG00000036696) #18	RHOT1 (ENSMLEG00000035757) #19	RHBDL3 (ENSMLEG00000032731) #20	ENSMLEG00000029859	ENSMLEG00000020349	ENSMLEG00000018149 #22	C17orf75 (ENSMLEG00000041614) #21	PSMD11 (ENSMLEG00000034425) #24	ENSMLEG00000026829	CDK5R1 (ENSMLEG00000008724) #25	MYO1D (ENSMLEG00000033057) #26	TMEM98 (ENSMLEG00000043246) #27	SPACA3 (ENSMLEG00000020226) #28	ASIC2 (ENSMLEG00000027675) #29	ENSMLEG00000023408
Drill	MODERN SPECIES	1089									INO80D (ENSMLEG00000039669)	NRP2 (ENSMLEG00000035732)	ENSMLEG00000040986	PARD3B (ENSMLEG00000031270)	ICOS (ENSMLEG00000007807)	CTLA4 (ENSMLEG00000037639)	CD28 (ENSMLEG00000037603)	ENSMLEG00000004995 #22	RAPH1 (ENSMLEG00000033969)	ABI2 (ENSMLEG00000040577)	CYP20A1 (ENSMLEG00000034377)	NBEAL1 (ENSMLEG00000032708)
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	145	NF1 (ENSCATG00000040392) #8	RAB11FIP4 (ENSCATG00000035537) #10	ENSCATG00000017519	COPRS (ENSCATG00000034499) #11	UTP6 (ENSCATG00000034868) #12	SUZ12 (ENSCATG00000045058) #13	CRLF3 (ENSCATG00000033888) #14	ATAD5 (ENSCATG00000044730) #15	TEFM (ENSCATG00000044869) #16	ADAP2 (ENSCATG00000032362) #17	RNF135 (ENSCATG00000010095) #18	RHOT1 (ENSCATG00000036450) #19	ENSCATG00000038442	RHBDL3 (ENSCATG00000038200) #20	C17orf75 (ENSCATG00000016130) #21	ENSCATG00000031958 #22	PSMD11 (ENSCATG00000043638) #24	CDK5R1 (ENSCATG00000019620) #25	MYO1D (ENSCATG00000040334) #26	TMEM98 (ENSCATG00000039721) #27	SPACA3 (ENSCATG00000029915) #28	ASIC2 (ENSCATG00000035584) #29	CCL2 (ENSCATG00000043802) #30	CCL7 (ENSCATG00000038886) ##33	CCL11 (ENSCATG00000037948) ##33	CCL8 (ENSCATG00000039815) #31	CCL13 (ENSCATG00000037447) #32	CCL1 (ENSCATG00000043758) #33	TMEM132E (ENSCATG00000035833) #34	ZNF830 (ENSCATG00000002410)	CCT6B (ENSCATG00000039984) #35
Sooty mangabey	MODERN SPECIES	570	FASTKD2 (ENSCATG00000038647)	MDH1B (ENSCATG00000035467)	DYTN (ENSCATG00000035275)	FAM237A (ENSCATG00000036777)	ADAM23 (ENSCATG00000043626)	ENSCATG00000037624	ZDBF2 (ENSCATG00000037091)	ENSCATG00000037736	NDUFS1 (ENSCATG00000037259)	INO80D (ENSCATG00000044654)	NRP2 (ENSCATG00000032051)	PARD3B (ENSCATG00000022284)	ICOS (ENSCATG00000043591)	CTLA4 (ENSCATG00000036235)	CD28 (ENSCATG00000043017)	ENSCATG00000043923 #22	RAPH1 (ENSCATG00000044686)	ABI2 (ENSCATG00000038300)	CYP20A1 (ENSCATG00000034415)	NBEAL1 (ENSCATG00000036478)	CARF (ENSCATG00000035061)	ENSCATG00000035496	ICA1L (ENSCATG00000036911)	FAM117B (ENSCATG00000033570)	ENSCATG00000033526	BMPR2 (ENSCATG00000033192)	NOP58 (ENSCATG00000037684)	ENSCATG00000035585	ENSCATG00000033452	KIAA2012 (ENSCATG00000034304)	FZD7 (ENSCATG00000004913)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.i #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Mas night monkey	MODERN SPECIES	416	ENSANAG00000023634	ENSANAG00000021368 #11	UTP6 (ENSANAG00000034603) #12	ENSANAG00000019084	ENSANAG00000035949	SUZ12 (ENSANAG00000025936) #13	CRLF3 (ENSANAG00000026772) #14	ATAD5 (ENSANAG00000038293) #15	ENSANAG00000030251	TEFM (ENSANAG00000037987) #16	ADAP2 (ENSANAG00000020704) #17	RNF135 (ENSANAG00000020022) #18	ENSANAG00000029584 #19	RHBDL3 (ENSANAG00000027744) #20	C17orf75 (ENSANAG00000032338) #21	ZNF207 (ENSANAG00000033773) #22	PSMD11 (ENSANAG00000021703) #24	CDK5R1 (ENSANAG00000012728) #25	MYO1D (ENSANAG00000036261) #26	ENSANAG00000037868	TMEM98 (ENSANAG00000038126) #27	SPACA3 (ENSANAG00000035068) #28	ASIC2 (ENSANAG00000001281) #29	CCL2 (ENSANAG00000037893) #30	CCL7 (ENSANAG00000022972) ##33	CCL11 (ENSANAG00000025265) ##33	CCL8 (ENSANAG00000023316) #31	ENSANAG00000034079	CCL1 (ENSANAG00000023858) #33	TMEM132E (ENSANAG00000029169) #34	ENSANAG00000006396
Cebidae	ANCESTRAL SPECIES	10	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493.b.a #12	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.i #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01100000263482.A.a.a.d.b #32	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Marmoset	MODERN SPECIES	17	NF1 (ENSCJAG00000013924) #8	RAB11FIP4 (ENSCJAG00000014099) #10	ENSCJAG00000014106	COPRS (ENSCJAG00000014110) #11	UTP6 (ENSCJAG00000014115) #12	SUZ12 (ENSCJAG00000014133) #13	ENSCJAG00000085031	CRLF3 (ENSCJAG00000039568) #14	ENSCJAG00000078212	ATAD5 (ENSCJAG00000014179) #15	TEFM (ENSCJAG00000014201) #16	RNF135 (ENSCJAG00000014210) #18	RHOT1 (ENSCJAG00000014248) #19	RHBDL3 (ENSCJAG00000014342) #20	C17orf75 (ENSCJAG00000014362) #21	ZNF207 (ENSCJAG00000014376) #22	PSMD11 (ENSCJAG00000014450) #24	CDK5R1 (ENSCJAG00000047608) #25	MYO1D (ENSCJAG00000014516) #26	TMEM98 (ENSCJAG00000014550) #27	SPACA3 (ENSCJAG00000014561) #28	ENSCJAG00000051816 #29	ASIC2 (ENSCJAG00000014568) #29	CCL7 (ENSCJAG00000062725) ##33	CCL2 (ENSCJAG00000057655) #30	CCL8 (ENSCJAG00000038352) #31	CCL13 (ENSCJAG00000042890) #32	ENSCJAG00000076401	TMEM132E (ENSCJAG00000014632) #34	CCT6B (ENSCJAG00000014646) #35	ZNF830 (ENSCJAG00000058086)
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000160802 #9	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493.b.a #12	ENSGT00390000008040.t	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.i #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.b #31	ENSGT01060000248892	ENSGT01100000263482.F #33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Capuchin	MODERN SPECIES	140	OMG (ENSCCAG00000017282) #9	EVI2A (ENSCCAG00000028523)	RAB11FIP4 (ENSCCAG00000027489) #10	COPRS (ENSCCAG00000010505) #11	ENSCCAG00000033318 #12	ENSCCAG00000032928	SUZ12 (ENSCCAG00000037725) #13	CRLF3 (ENSCCAG00000020821) #14	ATAD5 (ENSCCAG00000023275) #15	TEFM (ENSCCAG00000031597) #16	ADAP2 (ENSCCAG00000019010) #17	RNF135 (ENSCCAG00000034866) #18	RHOT1 (ENSCCAG00000024157) #19	RHBDL3 (ENSCCAG00000028200) #20	C17orf75 (ENSCCAG00000031556) #21	ZNF207 (ENSCCAG00000030971) #22	ENSCCAG00000030507 #24	CDK5R1 (ENSCCAG00000001118) #25	MYO1D (ENSCCAG00000035418) #26	TMEM98 (ENSCCAG00000025493) #27	SPACA3 (ENSCCAG00000036668) #28	ASIC2 (ENSCCAG00000037205) #29
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	95										TEFM (ENSSBOG00000019565) #16	ADAP2 (ENSSBOG00000030389) #17	RNF135 (ENSSBOG00000030138) #18	RHOT1 (ENSSBOG00000031085) #19	RHBDL3 (ENSSBOG00000028127) #20	C17orf75 (ENSSBOG00000023876) #21	ZNF207 (ENSSBOG00000026038) #22	ENSSBOG00000035683	PSMD11 (ENSSBOG00000027961) #24	ENSSBOG00000016899	CDK5R1 (ENSSBOG00000021952) #25	MYO1D (ENSSBOG00000005563) #26	TMEM98 (ENSSBOG00000029612) #27	SPACA3 (ENSSBOG00000031184) #28	ASIC2 (ENSSBOG00000032279) #29	CCL2 (ENSSBOG00000035114) #30	CCL7 (ENSSBOG00000033930) ##33	CCL11 (ENSSBOG00000028311) ##33	CCL8 (ENSSBOG00000018317) #31	ENSSBOG00000032338	CCL1 (ENSSBOG00000014955) #33	TMEM132E (ENSSBOG00000029140) #34
Bolivian squirrel monkey	MODERN SPECIES	56	MDH1B (ENSSBOG00000029880)	DYTN (ENSSBOG00000026100)	FAM237A (ENSSBOG00000033809)	ADAM23 (ENSSBOG00000001918)	ZDBF2 (ENSSBOG00000011111)	ENSSBOG00000036258	NDUFS1 (ENSSBOG00000028426)	INO80D (ENSSBOG00000020878)	ENSSBOG00000034794	NRP2 (ENSSBOG00000035290)	PARD3B (ENSSBOG00000029267)	ICOS (ENSSBOG00000000744)	CTLA4 (ENSSBOG00000034817)	ENSSBOG00000030167	CD28 (ENSSBOG00000032327)	ENSSBOG00000030839 #22	RAPH1 (ENSSBOG00000036069)	ABI2 (ENSSBOG00000031443)	CYP20A1 (ENSSBOG00000025384)	ENSSBOG00000030482	NBEAL1 (ENSSBOG00000032563)	CARF (ENSSBOG00000032523)	WDR12 (ENSSBOG00000015132)	ICA1L (ENSSBOG00000032973)	ENSSBOG00000016073	BMPR2 (ENSSBOG00000025318)	ENSSBOG00000029881	NOP58 (ENSSBOG00000020494)	ENSSBOG00000030624	KIAA2012 (ENSSBOG00000034494)	FZD7 (ENSSBOG00000013896)
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Tree shrew	MODERN SPECIES	3852													RHOT1 (ENSTBEG00000004348) #19	RHBDL3 (ENSTBEG00000005029) #20	C17orf75 (ENSTBEG00000005744) #21	ENSTBEG00000007127 #22
Glires	ANCESTRAL SPECIES	3	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01100000263482.F #33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Rabbit	MODERN SPECIES	10	OMG (ENSOCUG00000008593) #9	EVI2B (ENSOCUG00000008595)	EVI2A (ENSOCUG00000008603)	RAB11FIP4 (ENSOCUG00000007443) #10	COPRS (ENSOCUG00000015488) #11	UTP6 (ENSOCUG00000016980) #12	SUZ12 (ENSOCUG00000002536) #13	CRLF3 (ENSOCUG00000002764) #14	ATAD5 (ENSOCUG00000015229) #15	TEFM (ENSOCUG00000015262) #16	ADAP2 (ENSOCUG00000015269) #17	ENSOCUG00000008741 #18	RHOT1 (ENSOCUG00000012506) #19	RHBDL3 (ENSOCUG00000008179) #20	C17orf75 (ENSOCUG00000008187) #21	ZNF207 (ENSOCUG00000008195) #22	PSMD11 (ENSOCUG00000008495) #24	MYO1D (ENSOCUG00000008513) #26	TMEM98 (ENSOCUG00000009595) #27	SPACA3 (ENSOCUG00000010792) #28	ASIC2 (ENSOCUG00000013626) #29	ENSOCUG00000025296	CCL2 (ENSOCUG00000021710) #30	ENSOCUG00000034927 ##33	CCL11 (ENSOCUG00000005935) ##33	ENSOCUG00000030195	ENSOCUG00000013412 ##33	ENSOCUG00000013416	TMEM132E (ENSOCUG00000012159) #34	CCT6B (ENSOCUG00000012343) #35	ZNF830 (ENSOCUG00000012351)
Pika	MODERN SPECIES	4736												ENSOPRG00000014844 #18	RHOT1 (ENSOPRG00000014856) #19	RHBDL3 (ENSOPRG00000014911) #20	C17orf75 (ENSOPRG00000014924) #21	ENSOPRG00000014950 #22
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b.d ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01100000263482.F #33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b.d ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Muroidea	ANCESTRAL SPECIES		ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b.d ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00550000074797.b #8	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Northern American deer mouse	MODERN SPECIES	21	Omg (ENSPEMG00000012789) #9	Evi2b (ENSPEMG00000011425)	Evi2a (ENSPEMG00000009997)	Rab11fip4 (ENSPEMG00000017840) #10	Utp6 (ENSPEMG00000014081) #12	Suz12 (ENSPEMG00000019235) #13	Crlf3 (ENSPEMG00000018811) #14	Atad5 (ENSPEMG00000012850) #15	Tefm (ENSPEMG00000016212) #16	Adap2 (ENSPEMG00000002187) #17	ENSPEMG00000018511 #18	Rhot1 (ENSPEMG00000015998) #19	Rhbdl3 (ENSPEMG00000017609) #20	5730455P16Rik (ENSPEMG00000007661) #21	ENSPEMG00000031231	Zfp207 (ENSPEMG00000009110) #22	Psmd11 (ENSPEMG00000015029) #24	Cdk5r1 (ENSPEMG00000004672) #25	Myo1d (ENSPEMG00000021437) #26	Tmem98 (ENSPEMG00000015639) #27	Spaca3 (ENSPEMG00000008847) #28	Asic2 (ENSPEMG00000022612) #29	ENSPEMG00000021078	Ccl2 (ENSPEMG00000024087) #30	Ccl7 (ENSPEMG00000022329) ##33	Ccl11 (ENSPEMG00000031393) ##33	Ccl12 (ENSPEMG00000018710) ##33	Ccl8 (ENSPEMG00000024303) ##33	ENSPEMG00000022558	Tmem132e (ENSPEMG00000016046) #34	Cct6b (ENSPEMG00000022000) #35
Prairie vole	MODERN SPECIES	15	Omg (ENSMOCG00000008768) #9	Evi2b (ENSMOCG00000017970)	Evi2a (ENSMOCG00000003867)	Nf1 (ENSMOCG00000013672) #8	Rab11fip4 (ENSMOCG00000016866) #10	Utp6 (ENSMOCG00000014163) #12	Suz12 (ENSMOCG00000019023) #13	Crlf3 (ENSMOCG00000012869) #14	Atad5 (ENSMOCG00000003812) #15	Tefm (ENSMOCG00000000789) #16	Adap2 (ENSMOCG00000012833) #17	ENSMOCG00000008236 #18	Rhot1 (ENSMOCG00000018397) #19	Rhbdl3 (ENSMOCG00000018973) #20	5730455P16Rik (ENSMOCG00000020781) #21	Zfp207 (ENSMOCG00000017262) #22	ENSMOCG00000010820 #24	ENSMOCG00000012529 #24	Cdk5r1 (ENSMOCG00000001690) #25	Myo1d (ENSMOCG00000018702) #26	Tmem98 (ENSMOCG00000019650) #27	Spaca3 (ENSMOCG00000019356) #28	Asic2 (ENSMOCG00000011922) #29	Ccl2 (ENSMOCG00000017496) #30	Ccl7 (ENSMOCG00000014487) ##33	Ccl11 (ENSMOCG00000003156) ##33	Ccl12 (ENSMOCG00000009094) ##33	Ccl8 (ENSMOCG00000006845) ##33	Ccl1 (ENSMOCG00000005819)	Tmem132e (ENSMOCG00000017883) #34	Cct6b (ENSMOCG00000015382) #35
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01100000263482.F #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Chinese hamster chok1gshd	MODERN SPECIES	374	Omg (ENSCGRG00001003552) #9	Evi2b (ENSCGRG00001002438)	Evi2a (ENSCGRG00001001421)	Nf1 (ENSCGRG00001015811) #8	Rab11fip4 (ENSCGRG00001011772) #10	Utp6 (ENSCGRG00001000046) #12	Suz12 (ENSCGRG00001012460) #13	ENSCGRG00001008689 #14	Atad5 (ENSCGRG00001015531) #15	Tefm (ENSCGRG00001014415) #16	Adap2 (ENSCGRG00001013794) #17	ENSCGRG00001013219 #18	Rhot1 (ENSCGRG00001018128) #19	Rhbdl3 (ENSCGRG00001011616) #20	5730455P16Rik (ENSCGRG00001011069) #21	Zfp207 (ENSCGRG00001018133) #22	Psmd11 (ENSCGRG00001014740) #24	Cdk5r1 (ENSCGRG00001014057) #25	Myo1d (ENSCGRG00001020403) #26
Golden Hamster	MODERN SPECIES	684	Omg (ENSMAUG00000000920) #9	Evi2b (ENSMAUG00000021786)	Evi2a (ENSMAUG00000011179)	Nf1 (ENSMAUG00000021534) #8	Rab11fip4 (ENSMAUG00000012204) #10	Utp6 (ENSMAUG00000021895) #12	Suz12 (ENSMAUG00000001677) #13	Crlf3 (ENSMAUG00000001238) #14	Atad5 (ENSMAUG00000019548) #15	Tefm (ENSMAUG00000006565) #16	Adap2 (ENSMAUG00000001797) #17	ENSMAUG00000022173 #18	Rhot1 (ENSMAUG00000021776) #19	Rhbdl3 (ENSMAUG00000020013) #20	5730455P16Rik (ENSMAUG00000007002) #21	Zfp207 (ENSMAUG00000008892) #22	Psmd11 (ENSMAUG00000019073) #24	Cdk5r1 (ENSMAUG00000021140) #25	ENSMAUG00000009545	Myo1d (ENSMAUG00000013009) #26	Tmem98 (ENSMAUG00000012837) #27	Spaca3 (ENSMAUG00000018445) #28	Asic2 (ENSMAUG00000010967) #29	Ccl2 (ENSMAUG00000020623) #30	ENSMAUG00000012536	Ccl7 (ENSMAUG00000011314) ##33	Ccl11 (ENSMAUG00000015725) ##33	Ccl12 (ENSMAUG00000013327) ##33	Ccl8 (ENSMAUG00000018176) ##33	ENSMAUG00000013646 #33	Tmem132e (ENSMAUG00000016009) #34
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Mus	ANCESTRAL SPECIES	2	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.q #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.q #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #10	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.q #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.c.b ##33	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35
spretus	MODERN SPECIES	2	Omg (MGP_SPRETEiJ_G0017667) #9	MGP_SPRETEiJ_G0017668	MGP_SPRETEiJ_G0017669	Evi2a (MGP_SPRETEiJ_G0017670)	Rab11fip4 (MGP_SPRETEiJ_G0017671) #10	Utp6 (MGP_SPRETEiJ_G0017672) #12	Suz12 (MGP_SPRETEiJ_G0017673) #13	Crlf3 (MGP_SPRETEiJ_G0017674) #14	Atad5 (MGP_SPRETEiJ_G0017675) #15	Tefm (MGP_SPRETEiJ_G0017676) #16	Adap2 (MGP_SPRETEiJ_G0017677) #17	Rnf135 (MGP_SPRETEiJ_G0017678)	Rhot1 (MGP_SPRETEiJ_G0017679) #19	Rhbdl3 (MGP_SPRETEiJ_G0017680) #20	5730455P16Rik (MGP_SPRETEiJ_G0017681) #21	Zfp207 (MGP_SPRETEiJ_G0017682) #22	Psmd11 (MGP_SPRETEiJ_G0017683) #24	Cdk5r1 (MGP_SPRETEiJ_G0017684) #25	Myo1d (MGP_SPRETEiJ_G0017685) #26	Tmem98 (MGP_SPRETEiJ_G0017686) #27	Spaca3 (MGP_SPRETEiJ_G0017687) #28	Asic2 (MGP_SPRETEiJ_G0017688) #29	MGP_SPRETEiJ_G0017689	MGP_SPRETEiJ_G0017690	Ccl2 (MGP_SPRETEiJ_G0017691) #30	Ccl7 (MGP_SPRETEiJ_G0017692) ##33	Ccl11 (MGP_SPRETEiJ_G0017693) ##33	Ccl12 (MGP_SPRETEiJ_G0017694) ##33	Ccl8 (MGP_SPRETEiJ_G0017695) ##33	Ccl1 (MGP_SPRETEiJ_G0017696)	Tmem132e (MGP_SPRETEiJ_G0017697) #34
Steppe mouse	MODERN SPECIES	3351	Evi2b (ENSMSIG00000009267)	Evi2a (ENSMSIG00000009262)	Nf1 (ENSMSIG00000008704) #8	Rab11fip4 (ENSMSIG00000008628) #10	ENSMSIG00000008597	Utp6 (ENSMSIG00000008510) #12	Suz12 (ENSMSIG00000008361) #13	Crlf3 (ENSMSIG00000008282) #14	Atad5 (ENSMSIG00000008129) #15	Tefm (ENSMSIG00000008088) #16	Adap2 (ENSMSIG00000008061) #17	Rnf135 (ENSMSIG00000008044)	Rhot1 (ENSMSIG00000007800) #19	Rhbdl3 (ENSMSIG00000007754) #20	5730455P16Rik (ENSMSIG00000007744) #21	Zfp207 (ENSMSIG00000007459) #22	Psmd11 (ENSMSIG00000007357) #24	Cdk5r1 (ENSMSIG00000007341) #25	ENSMSIG00000007320	Myo1d (ENSMSIG00000007194) #26	Tmem98 (ENSMSIG00000007161) #27	Spaca3 (ENSMSIG00000007147) #28	ENSMSIG00000007120	Asic2 (ENSMSIG00000007029) #29	Ccl2 (ENSMSIG00000007015) #30	ENSMSIG00000006998	Ccl7 (ENSMSIG00000006992) ##33	Ccl11 (ENSMSIG00000006983) ##33	Ccl12 (ENSMSIG00000006962) ##33	Ccl8 (ENSMSIG00000006943) ##33	Ccl1 (ENSMSIG00000006904)
Mouse	MODERN SPECIES	2	Nf1 (ENSMUSG00000020716) #8	Omg (ENSMUSG00000049612) #9	Evi2b (ENSMUSG00000093938)	Evi2a (ENSMUSG00000078771)	Rab11fip4 (ENSMUSG00000017639) #10	Utp6 (ENSMUSG00000035575) #12	Suz12 (ENSMUSG00000017548) #13	Crlf3 (ENSMUSG00000017561) #14	Atad5 (ENSMUSG00000017550) #15	Tefm (ENSMUSG00000046909) #16	Adap2 (ENSMUSG00000020709) #17	Rnf135 (ENSMUSG00000020707)	Rhot1 (ENSMUSG00000017686) #19	Rhbdl3 (ENSMUSG00000017692) #20	5730455P16Rik (ENSMUSG00000057181) #21	Zfp207 (ENSMUSG00000017421) #22	Psmd11 (ENSMUSG00000017428) #24	Cdk5r1 (ENSMUSG00000048895) #25	Myo1d (ENSMUSG00000035441) #26	Tmem98 (ENSMUSG00000035413) #27	Spaca3 (ENSMUSG00000053184) #28	Asic2 (ENSMUSG00000020704) #29	Ccl2 (ENSMUSG00000035385) #30	Ccl7 (ENSMUSG00000035373) ##33	Ccl11 (ENSMUSG00000020676) ##33	Ccl12 (ENSMUSG00000035352) ##33	Ccl8 (ENSMUSG00000009185) ##33	Ccl1 (ENSMUSG00000020702)	Tmem132e (ENSMUSG00000020701) #34	Cct6b (ENSMUSG00000020698) #35	Zfp830 (ENSMUSG00000046010)
Ryukyu mouse	MODERN SPECIES	2	Omg (MGP_CAROLIEiJ_G0016823) #9	MGP_CAROLIEiJ_G0016824	MGP_CAROLIEiJ_G0016825	Evi2a (MGP_CAROLIEiJ_G0016826)	Rab11fip4 (MGP_CAROLIEiJ_G0016827) #10	Utp6 (MGP_CAROLIEiJ_G0016828) #12	Suz12 (MGP_CAROLIEiJ_G0016829) #13	Crlf3 (MGP_CAROLIEiJ_G0016830) #14	Atad5 (MGP_CAROLIEiJ_G0016831) #15	Tefm (MGP_CAROLIEiJ_G0016832) #16	Adap2 (MGP_CAROLIEiJ_G0016833) #17	Rnf135 (MGP_CAROLIEiJ_G0016834)	Rhot1 (MGP_CAROLIEiJ_G0016835) #19	Rhbdl3 (MGP_CAROLIEiJ_G0016836) #20	5730455P16Rik (MGP_CAROLIEiJ_G0016837) #21	Zfp207 (MGP_CAROLIEiJ_G0016838) #22	Psmd11 (MGP_CAROLIEiJ_G0016839) #24	Cdk5r1 (MGP_CAROLIEiJ_G0016840) #25	Myo1d (MGP_CAROLIEiJ_G0016841) #26	Tmem98 (MGP_CAROLIEiJ_G0016842) #27	Spaca3 (MGP_CAROLIEiJ_G0016843) #28	Asic2 (MGP_CAROLIEiJ_G0016844) #29	MGP_CAROLIEiJ_G0016845	MGP_CAROLIEiJ_G0016846	Ccl2 (MGP_CAROLIEiJ_G0016847) #30	Ccl7 (MGP_CAROLIEiJ_G0016848) ##33	Ccl11 (MGP_CAROLIEiJ_G0016849) ##33	Ccl12 (MGP_CAROLIEiJ_G0016850) ##33	Ccl8 (MGP_CAROLIEiJ_G0016851) ##33	Ccl1 (MGP_CAROLIEiJ_G0016852)	Tmem132e (MGP_CAROLIEiJ_G0016853) #34
Shrew mouse	MODERN SPECIES	5	Omg (MGP_PahariEiJ_G0017960) #9	MGP_PahariEiJ_G0017961	MGP_PahariEiJ_G0017962	Evi2a (MGP_PahariEiJ_G0017963)	Rab11fip4 (MGP_PahariEiJ_G0017964) #10	Utp6 (MGP_PahariEiJ_G0017965) #12	Suz12 (MGP_PahariEiJ_G0017966) #13	Crlf3 (MGP_PahariEiJ_G0017967) #14	Atad5 (MGP_PahariEiJ_G0017968) #15	Tefm (MGP_PahariEiJ_G0017969) #16	Adap2 (MGP_PahariEiJ_G0017970) #17	Rnf135 (MGP_PahariEiJ_G0017971)	Rhot1 (MGP_PahariEiJ_G0017972) #19	MGP_PahariEiJ_G0017973 #20	5730455P16Rik (MGP_PahariEiJ_G0017974) #21	Zfp207 (MGP_PahariEiJ_G0017975) #22	Psmd11 (MGP_PahariEiJ_G0017976) #24	Cdk5r1 (MGP_PahariEiJ_G0017977) #25	Myo1d (MGP_PahariEiJ_G0017978) #26	Tmem98 (MGP_PahariEiJ_G0017979) #27	Spaca3 (MGP_PahariEiJ_G0017980) #28	Asic2 (MGP_PahariEiJ_G0017981) #29	MGP_PahariEiJ_G0017982	MGP_PahariEiJ_G0017983	Ccl2 (MGP_PahariEiJ_G0017984) #30	Ccl7 (MGP_PahariEiJ_G0017985) ##33	Ccl11 (MGP_PahariEiJ_G0017986) ##33	MGP_PahariEiJ_G0017987 ##33	MGP_PahariEiJ_G0017988 ##33	Ccl1 (MGP_PahariEiJ_G0017989)	Tmem132e (MGP_PahariEiJ_G0017990) #34
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1422													Rhot1 (ENSNGAG00000002156) #19	Rhbdl3 (ENSNGAG00000011451) #20	5730455P16Rik (ENSNGAG00000008162) #21	ENSNGAG00000018144 #22	Psmd11 (ENSNGAG00000007349) #24	Cdk5r1 (ENSNGAG00000015681) #25	Myo1d (ENSNGAG00000014753) #26	Tmem98 (ENSNGAG00000000432) #27	Spaca3 (ENSNGAG00000019287) #28	Asic2 (ENSNGAG00000017605) #29	Ccl2 (ENSNGAG00000013703) #30	Ccl7 (ENSNGAG00000012785) ##33	ENSNGAG00000010601 ##33	Ccl12 (ENSNGAG00000015220) ##33	ENSNGAG00000008109 ##33	Ccl1 (ENSNGAG00000003526)	Tmem132e (ENSNGAG00000014402) #34	ENSNGAG00000017447	Cct6b (ENSNGAG00000011636) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1276	Fam13a (ENSNGAG00000016431)	Tigd2 (ENSNGAG00000013979)	Gprin3 (ENSNGAG00000000029)	Snca (ENSNGAG00000017413)	Mmrn1 (ENSNGAG00000013643)	ENSNGAG00000014274	ENSNGAG00000012453	Grid2 (ENSNGAG00000018830)	Atoh1 (ENSNGAG00000017323)	Smarcad1 (ENSNGAG00000000810)	Hpgds (ENSNGAG00000012687)	Qrfprl (ENSNGAG00000010835)	Tnip3 (ENSNGAG00000013422)	Ndnf (ENSNGAG00000012166)	Prdm5 (ENSNGAG00000018317)	ENSNGAG00000020137 #22	Mad2l1 (ENSNGAG00000019258)	ENSNGAG00000011475	Gng12 (ENSNGAG00000004651)	Gadd45a (ENSNGAG00000010577)	ENSNGAG00000019203	ENSNGAG00000014083	Il23r (ENSNGAG00000017497)
Lesser Egyptian jerboa	MODERN SPECIES	131	Lrp2bp (ENSJJAG00000021416)	Snx25 (ENSJJAG00000011269)	ENSJJAG00000016310	Cfap97 (ENSJJAG00000022129)	Slc25a4 (ENSJJAG00000000440)	Helt (ENSJJAG00000000703)	ENSJJAG00000001971	Acsl1 (ENSJJAG00000011663)	Cenpu (ENSJJAG00000018172)	Primpol (ENSJJAG00000020921)	Casp3 (ENSJJAG00000010159)	ENSJJAG00000005302	ENSJJAG00000011175	ENSJJAG00000015216	Enpp6 (ENSJJAG00000015782)	ENSJJAG00000023183 #22	ENSJJAG00000000499	Stox2 (ENSJJAG00000020846)	ENSJJAG00000005969
Kangaroo rat	MODERN SPECIES	350	Omg (ENSDORG00000026854) #9	Evi2b (ENSDORG00000011472)	Evi2a (ENSDORG00000026168)	Nf1 (ENSDORG00000011467) #8	Rab11fip4 (ENSDORG00000011807) #10	Utp6 (ENSDORG00000003843) #12	Suz12 (ENSDORG00000000460) #13	Crlf3 (ENSDORG00000015909) #14	Atad5 (ENSDORG00000000344) #15	Tefm (ENSDORG00000000352) #16	Adap2 (ENSDORG00000006678) #17	ENSDORG00000025558 #18	Rhot1 (ENSDORG00000001407) #19	Rhbdl3 (ENSDORG00000024743) #20	5730455P16Rik (ENSDORG00000007133) #21	Zfp207 (ENSDORG00000007139) #22	Psmd11 (ENSDORG00000011438) #24	Cdk5r1 (ENSDORG00000011445) #25	Myo1d (ENSDORG00000011446) #26	Tmem98 (ENSDORG00000026828) #27	Spaca3 (ENSDORG00000015899) #28	Asic2 (ENSDORG00000015901) #29	Ccl7 (ENSDORG00000003289) ##33	ENSDORG00000007302 ##33	Tmem132e (ENSDORG00000006863) #34
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.c.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a.b ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36	ENSGT00390000012719.a #37
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.c.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a.b ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36	ENSGT00390000012719.a #37
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.c.a.a ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a.b ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36	ENSGT00390000012719.a #37
Long-tailed chinchilla	MODERN SPECIES	188	OMG (ENSCLAG00000012747) #9	EVI2B (ENSCLAG00000017819)	EVI2A (ENSCLAG00000013303)	RAB11FIP4 (ENSCLAG00000012724) #10	COPRS (ENSCLAG00000013385) #11	UTP6 (ENSCLAG00000007274) #12	SUZ12 (ENSCLAG00000008281) #13	CRLF3 (ENSCLAG00000009651) #14	ATAD5 (ENSCLAG00000009928) #15	TEFM (ENSCLAG00000006597) #16	ADAP2 (ENSCLAG00000005862) #17	ENSCLAG00000007154 #18	RHOT1 (ENSCLAG00000007856) #19	RHBDL3 (ENSCLAG00000008877) #20	C17orf75 (ENSCLAG00000007683) #21	ZNF207 (ENSCLAG00000006441) #22	PSMD11 (ENSCLAG00000009489) #24	CDK5R1 (ENSCLAG00000017838) #25	MYO1D (ENSCLAG00000009101) #26	TMEM98 (ENSCLAG00000007965) #27	SPACA3 (ENSCLAG00000008459) #28	ASIC2 (ENSCLAG00000004876) #29	ENSCLAG00000005731 ##33	ENSCLAG00000006066 ##33	CCL11 (ENSCLAG00000004752) ##33	ENSCLAG00000005107 ##33	ENSCLAG00000006411	TMEM132E (ENSCLAG00000006946) #34	CCT6B (ENSCLAG00000014724) #35	ZNF830 (ENSCLAG00000017672)	LIG3 (ENSCLAG00000009138) #36
Degu	MODERN SPECIES	113	NF1 (ENSODEG00000011949) #8	OMG (ENSODEG00000011985) #9	EVI2B (ENSODEG00000013035)	RAB11FIP4 (ENSODEG00000015676) #10	ENSODEG00000012209	COPRS (ENSODEG00000011871) #11	UTP6 (ENSODEG00000011971) #12	SUZ12 (ENSODEG00000013459) #13	ENSODEG00000013349 #14	ATAD5 (ENSODEG00000014008) #15	ADAP2 (ENSODEG00000011944) #17	ENSODEG00000013107 #18	RHOT1 (ENSODEG00000012674) #19	RHBDL3 (ENSODEG00000012800) #20	C17orf75 (ENSODEG00000012638) #21	ZNF207 (ENSODEG00000012683) #22	ENSODEG00000013615 #24	ENSODEG00000014487 #24	CDK5R1 (ENSODEG00000020159) #25	MYO1D (ENSODEG00000012420) #26	TMEM98 (ENSODEG00000012273) #27	ENSODEG00000012654 #28	ASIC2 (ENSODEG00000012964) #29	CCL11 (ENSODEG00000013280) ##33	ENSODEG00000013352	TMEM132E (ENSODEG00000013225) #34	CCT6B (ENSODEG00000013365) #35	ENSODEG00000020133	ZNF830 (ENSODEG00000012121)	LIG3 (ENSODEG00000014335) #36	RFFL (ENSODEG00000013992) #37
Guinea pig	MODERN SPECIES	32	OR4K2 (ENSCPOG00000030333)	OR4Q3 (ENSCPOG00000020338)	RAB11FIP4 (ENSCPOG00000011634) #10	COPRS (ENSCPOG00000006018) #11	UTP6 (ENSCPOG00000014294) #12	ENSCPOG00000034287	SUZ12 (ENSCPOG00000024628) #13	CRLF3 (ENSCPOG00000008693) #14	ATAD5 (ENSCPOG00000011900) #15	TEFM (ENSCPOG00000011909) #16	ADAP2 (ENSCPOG00000004369) #17	RNF135 (ENSCPOG00000004880) #18	RHOT1 (ENSCPOG00000007927) #19	RHBDL3 (ENSCPOG00000022880) #20	C17orf75 (ENSCPOG00000013162) #21	ZNF207 (ENSCPOG00000001728) #22	PSMD11 (ENSCPOG00000009798) #24	CDK5R1 (ENSCPOG00000020676) #25	MYO1D (ENSCPOG00000000149) #26	TMEM98 (ENSCPOG00000000153) #27	SPACA3 (ENSCPOG00000027605) #28	ASIC2 (ENSCPOG00000025132) #29	ENSCPOG00000033808 ##33	ENSCPOG00000013468 ##33	CCL7 (ENSCPOG00000013035) ##33	CCL11 (ENSCPOG00000032138) ##33	ENSCPOG00000033402 ##33	TMEM132E (ENSCPOG00000001908) #34	CCT6B (ENSCPOG00000002794) #35	ZNF830 (ENSCPOG00000031218)	LIG3 (ENSCPOG00000013032) #36
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000017502	MPO (ENSHGLG00000019104)	LPO (ENSHGLG00000018067)	MKS1 (ENSHGLG00000012631)	ENSHGLG00000037944	ENSHGLG00000045253 ##33	ENSHGLG00000010660 #16	ENSHGLG00000009908 #15	ENSHGLG00000010534	ENSHGLG00000010961 #17	ENSHGLG00000041636 #18	RHOT1 (ENSHGLG00000011785) #19	ENSHGLG00000049011 #20	C17orf75 (ENSHGLG00000019463) #21	ENSHGLG00000002460	ZNF207 (ENSHGLG00000019501) #22	PSMD11 (ENSHGLG00000019505) #24	CDK5R1 (ENSHGLG00000037917) #25	MYO1D (ENSHGLG00000015796) #26	TMEM98 (ENSHGLG00000015858) #27	SPACA3 (ENSHGLG00000015911) #28	ASIC2 (ENSHGLG00000000958) #29	CCL2 (ENSHGLG00000034308) ##33	CCL11 (ENSHGLG00000001015) ##33	ENSHGLG00000001025 ##33	ENSHGLG00000042122	Lig3 (ENSHGLG00000001349) #36	ENSHGLG00000001734 #37	RAD51D (ENSHGLG00000001857)	FNDC8 (ENSHGLG00000001963)	NLE1 (ENSHGLG00000002006)
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Eurasian red squirrel	MODERN SPECIES	12	OMG (ENSSVLG00005015267) #9	EVI2B (ENSSVLG00005015286)	EVI2A (ENSSVLG00005015311)	RAB11FIP4 (ENSSVLG00005015383) #10	COPRS (ENSSVLG00005015650) #11	UTP6 (ENSSVLG00005015715) #12	SUZ12 (ENSSVLG00005015781) #13	CRLF3 (ENSSVLG00005016089) #14	ATAD5 (ENSSVLG00005016127) #15	TEFM (ENSSVLG00005016323) #16	ADAP2 (ENSSVLG00005016368) #17	RNF135 (ENSSVLG00005016571) #18	RHOT1 (ENSSVLG00005016781) #19	RHBDL3 (ENSSVLG00005016946) #20	C17orf75 (ENSSVLG00005017088) #21	ZNF207 (ENSSVLG00005017171) #22	ENSSVLG00005017498 #24	CDK5R1 (ENSSVLG00005017534) #25	MYO1D (ENSSVLG00005017566) #26	ENSSVLG00005017677	TMEM98 (ENSSVLG00005017715) #27	ENSSVLG00005017765 #28	ASIC2 (ENSSVLG00005017834) #29	ENSSVLG00005018047	ENSSVLG00005018082	ENSSVLG00005018128	ENSSVLG00005018180	ENSSVLG00005018242	ENSSVLG00005018284	ENSSVLG00005018440	ENSSVLG00005018536
Marmotini	ANCESTRAL SPECIES	39	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151	ENSGT00940000156492 #36
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	34	ENSGT00940000160802 #9	ENSGT00390000009142	ENSGT00390000003004	ENSGT00440000033742.a.b #10	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057.q #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##33	ENSGT01100000263482.A.a.a.d.a.a.b ##33	ENSGT01100000263482.A.a.a.c.a ##33	ENSGT01030000234760	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151
Squirrel	MODERN SPECIES	138	OMG (ENSSTOG00000005562) #9	EVI2B (ENSSTOG00000026274)	NF1 (ENSSTOG00000034066) #8	RAB11FIP4 (ENSSTOG00000010883) #10	COPRS (ENSSTOG00000025397) #11	UTP6 (ENSSTOG00000015875) #12	SUZ12 (ENSSTOG00000022754) #13	CRLF3 (ENSSTOG00000012342) #14	ATAD5 (ENSSTOG00000025411) #15	TEFM (ENSSTOG00000012367) #16	ADAP2 (ENSSTOG00000025811) #17	RNF135 (ENSSTOG00000027338) #18	RHOT1 (ENSSTOG00000011738) #19	RHBDL3 (ENSSTOG00000000698) #20	C17orf75 (ENSSTOG00000000705) #21	ENSSTOG00000000712 #22	PSMD11 (ENSSTOG00000009686) #24	CDK5R1 (ENSSTOG00000009703) #25	MYO1D (ENSSTOG00000000438) #26	TMEM98 (ENSSTOG00000011945) #27	ASIC2 (ENSSTOG00000027185) #29	ENSSTOG00000028166 #30	CCL7 (ENSSTOG00000032557) ##33	CCL11 (ENSSTOG00000012718) ##33	ENSSTOG00000023292 ##33	CCL1 (ENSSTOG00000007409) #33	TMEM132E (ENSSTOG00000024193) #34	CCT6B (ENSSTOG00000027687) #35	ZNF830 (ENSSTOG00000006057)	LIG3 (ENSSTOG00000006065) #36	RFFL (ENSSTOG00000006115) #37
Arctic ground squirrel	MODERN SPECIES	63	EVI2B (ENSUPAG00010022480)	EVI2A (ENSUPAG00010022481)	RAB11FIP4 (ENSUPAG00010022484) #10	ENSUPAG00010022485	COPRS (ENSUPAG00010022492) #11	ENSUPAG00010022494 #12	SUZ12 (ENSUPAG00010022503) #13	CRLF3 (ENSUPAG00010022508) #14	ATAD5 (ENSUPAG00010022514) #15	TEFM (ENSUPAG00010022537) #16	ADAP2 (ENSUPAG00010022538) #17	RNF135 (ENSUPAG00010022541) #18	RHOT1 (ENSUPAG00010022548) #19	RHBDL3 (ENSUPAG00010023045) #20	C17orf75 (ENSUPAG00010023047) #21	ZNF207 (ENSUPAG00010023051) #22	PSMD11 (ENSUPAG00010023057) #24	CDK5R1 (ENSUPAG00010023059) #25	MYO1D (ENSUPAG00010023060) #26	TMEM98 (ENSUPAG00010023062) #27	SPACA3 (ENSUPAG00010023063) #28	ASIC2 (ENSUPAG00010023064) #29
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00730000111057.r #22
Squirrel	MODERN SPECIES	573																ENSSTOG00000030534 #22
Alpin marmot	MODERN SPECIES	71	EVI2B (ENSMMMG00000012769)	EVI2A (ENSMMMG00000012771)	ENSMMMG00000012772	RAB11FIP4 (ENSMMMG00000012781) #10	ENSMMMG00000012799	COPRS (ENSMMMG00000012825) #11	UTP6 (ENSMMMG00000012830) #12	SUZ12 (ENSMMMG00000012866) #13	CRLF3 (ENSMMMG00000012930) #14	TEFM (ENSMMMG00000012960) #16	ADAP2 (ENSMMMG00000012962) #17	RNF135 (ENSMMMG00000012984) #18	RHOT1 (ENSMMMG00000013006) #19	RHBDL3 (ENSMMMG00000013354) #20	C17orf75 (ENSMMMG00000013368) #21	ZNF207 (ENSMMMG00000013387) #22	PSMD11 (ENSMMMG00000013441) #24	CDK5R1 (ENSMMMG00000013447) #25	MYO1D (ENSMMMG00000013449) #26	ENSMMMG00000013474 #27	SPACA3 (ENSMMMG00000013483) #28	ASIC2 (ENSMMMG00000013492) #29	ENSMMMG00000013509 #30	CCL7 (ENSMMMG00000013514) ##33	CCL11 (ENSMMMG00000013522) ##33	ENSMMMG00000013534 ##33	ENSMMMG00000013542	ENSMMMG00000013547 #34	CCT6B (ENSMMMG00000013567) #35	ZNF830 (ENSMMMG00000013592)	LIG3 (ENSMMMG00000013596) #36