Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00490000044407	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00490000044407	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00490000044407	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00490000044407	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Bovidae	ANCESTRAL SPECIES	2	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493.i #13	ENSGT00390000012364 #14	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Bovinae	ANCESTRAL SPECIES		ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493.i #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Bos	ANCESTRAL SPECIES	1	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493.i #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Bos_b	ANCESTRAL SPECIES	38			ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493.i #13	ENSGT00390000012364 #14	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Hybrid Bos Indicus	MODERN SPECIES	10	OMG (ENSBIXG00005002940) #7	EVI2B (ENSBIXG00005018145) #8	EVI2A (ENSBIXG00005018153) #9	NF1 (ENSBIXG00005018607) #10	RAB11FIP4 (ENSBIXG00005018731) #11	COPRS (ENSBIXG00005018823) #12	UTP6 (ENSBIXG00005018868) #13	SUZ12 (ENSBIXG00005000054) #14	CRLF3 (ENSBIXG00005003096) #15	ATAD5 (ENSBIXG00005002643) #16	TEFM (ENSBIXG00005019077) #17	ADAP2 (ENSBIXG00005006808) #18	RNF135 (ENSBIXG00005019124) #19	RHOT1 (ENSBIXG00005019289) #20	C17orf75 (ENSBIXG00005006030) #21	ZNF207 (ENSBIXG00005019493) #22	ENSBIXG00005019526 #23	PSMD11 (ENSBIXG00005019559) #24	CDK5R1 (ENSBIXG00005019571) #25	MYO1D (ENSBIXG00005019665) #26	TMEM98 (ENSBIXG00005019737) #27	ENSBIXG00005019792 #28	ASIC2 (ENSBIXG00005006881) #29	CCL2 (ENSBIXG00005006654) #30	CCL11 (ENSBIXG00005003267) #31	ENSBIXG00005019984 #32	ENSBIXG00005003275 #33	TMEM132E (ENSBIXG00005003295) #34	CCT6B (ENSBIXG00005020356) #35	ZNF830 (ENSBIXG00005000019) #36	LIG3 (ENSBIXG00005020425) #37
Cow	MODERN SPECIES	10	ENSBTAG00000050242 #10	RAB11FIP4 (ENSBTAG00000016972) #11	COPRS (ENSBTAG00000049483) #12	UTP6 (ENSBTAG00000015612) #13	SUZ12 (ENSBTAG00000018752) #14	ENSBTAG00000025202	CRLF3 (ENSBTAG00000018381) #15	ATAD5 (ENSBTAG00000018383) #16	ENSBTAG00000051813 ##23	TEFM (ENSBTAG00000018386) #17	ADAP2 (ENSBTAG00000003334) #18	RNF135 (ENSBTAG00000017225) #19	RHOT1 (ENSBTAG00000010001) #20	RHBDL3 (ENSBTAG00000020992)	C19H17orf75 (ENSBTAG00000020994) #21	ZNF207 (ENSBTAG00000008883) #22	PSMD11 (ENSBTAG00000018897) #24	CDK5R1 (ENSBTAG00000004475) #25	MYO1D (ENSBTAG00000015527) #26	TMEM98 (ENSBTAG00000008913) #27	SPACA3 (ENSBTAG00000000344) #28	ASIC2 (ENSBTAG00000025200) #29	CCL2 (ENSBTAG00000037811) #30	CCL11 (ENSBTAG00000004129) #31	CCL8 (ENSBTAG00000014113) #32	CCL1 (ENSBTAG00000008832) #33	TMEM132E (ENSBTAG00000002680) #34	CCT6B (ENSBTAG00000020338) #35	ZNF830 (ENSBTAG00000020340) #36	LIG3 (ENSBTAG00000018689) #37	RFFL (ENSBTAG00000013645)
Bos_a	ANCESTRAL SPECIES		ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493.i #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Wild yak	MODERN SPECIES	829	EVI2B (ENSBMUG00000011238) #8	EVI2A (ENSBMUG00000011235) #9	NF1 (ENSBMUG00000011111) #10	RAB11FIP4 (ENSBMUG00000010684) #11	COPRS (ENSBMUG00000010623) #12	UTP6 (ENSBMUG00000010588) #13	SUZ12 (ENSBMUG00000010551) #14	ENSBMUG00000010522 #15	ATAD5 (ENSBMUG00000010450) #16	TEFM (ENSBMUG00000010384) #17	ADAP2 (ENSBMUG00000010349) #18	ENSBMUG00000010324 #19	RHOT1 (ENSBMUG00000010283) #20	RHBDL3 (ENSBMUG00000010162)	ENSBMUG00000010140 #21	ZNF207 (ENSBMUG00000010122) #22	PSMD11 (ENSBMUG00000010031) #24	CDK5R1 (ENSBMUG00000010012) #25	MYO1D (ENSBMUG00000009987) #26	TMEM98 (ENSBMUG00000009909) #27	SPACA3 (ENSBMUG00000009900) #28	ASIC2 (ENSBMUG00000009872) #29
Domestic yak	MODERN SPECIES	10	OMG (ENSBGRG00000015564) #7	EVI2B (ENSBGRG00000015582) #8	EVI2A (ENSBGRG00000015599) #9	RAB11FIP4 (ENSBGRG00000015654) #11	UTP6 (ENSBGRG00000016004) #13	SUZ12 (ENSBGRG00000016989) #14	CRLF3 (ENSBGRG00000017273) #15	ENSBGRG00000017421	ATAD5 (ENSBGRG00000017486) #16	TEFM (ENSBGRG00000018181) #17	ADAP2 (ENSBGRG00000018321) #18	RNF135 (ENSBGRG00000018378) #19	RHOT1 (ENSBGRG00000018417) #20	RHBDL3 (ENSBGRG00000018758)	C17orf75 (ENSBGRG00000018880) #21	ZNF207 (ENSBGRG00000018994) #22	ENSBGRG00000019374 ##23	PSMD11 (ENSBGRG00000019390) #24	CDK5R1 (ENSBGRG00000019524) #25	MYO1D (ENSBGRG00000019568) #26	TMEM98 (ENSBGRG00000019780) #27	ENSBGRG00000019895 #28	ASIC2 (ENSBGRG00000019964) #29	ENSBGRG00000020251 #30	CCL11 (ENSBGRG00000020299) #31	ENSBGRG00000020373 #32	ENSBGRG00000020420 #33	TMEM132E (ENSBGRG00000020451) #34	CCT6B (ENSBGRG00000020692) #35	ZNF830 (ENSBGRG00000021136) #36	LIG3 (ENSBGRG00000021180) #37
American bison	MODERN SPECIES	3331	EVI2A (ENSBBBG00000016984) #9	RAB11FIP4 (ENSBBBG00000016968) #11	ENSBBBG00000016891	COPRS (ENSBBBG00000016861) #12	ENSBBBG00000004167 #13	SUZ12 (ENSBBBG00000004153) #14	CRLF3 (ENSBBBG00000007423) #15	ENSBBBG00000016709	ATAD5 (ENSBBBG00000016688) #16	TEFM (ENSBBBG00000016527) #17	ADAP2 (ENSBBBG00000016491) #18	RNF135 (ENSBBBG00000008504) #19	RHOT1 (ENSBBBG00000004063) #20	RHBDL3 (ENSBBBG00000016033)	C17orf75 (ENSBBBG00000016016) #21	ZNF207 (ENSBBBG00000003982) #22	PSMD11 (ENSBBBG00000015842) #24	CDK5R1 (ENSBBBG00000015765) #25	MYO1D (ENSBBBG00000015737) #26	TMEM98 (ENSBBBG00000015612) #27	SPACA3 (ENSBBBG00000003890) #28	ASIC2 (ENSBBBG00000000789) #29	CCL2 (ENSBBBG00000015537) #30	CCL11 (ENSBBBG00000015529) #31	ENSBBBG00000015515 #32	TMEM132E (ENSBBBG00000003856) #34	CCT6B (ENSBBBG00000015432) #35	ZNF830 (ENSBBBG00000003814) #36	LIG3 (ENSBBBG00000003485) #37	RFFL (ENSBBBG00000001330)	RAD51D (ENSBBBG00000015308)
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493.i #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Rambouillet Sheep	MODERN SPECIES	2	EVI2B (ENSOARG00020010685) #8	EVI2A (ENSOARG00020010709) #9	RAB11FIP4 (ENSOARG00020010743) #11	ENSOARG00020011158 #12	ENSOARG00020011224 #12	UTP6 (ENSOARG00020011367) #13	SUZ12 (ENSOARG00020011487) #14	CRLF3 (ENSOARG00020011795) #15	ENSOARG00020011916	TEFM (ENSOARG00020011981) #17	ADAP2 (ENSOARG00020012053) #18	RNF135 (ENSOARG00020012111) #19	RHOT1 (ENSOARG00020012187) #20	RHBDL3 (ENSOARG00020012523)	C17orf75 (ENSOARG00020012947) #21	ZNF207 (ENSOARG00020013074) #22	PSMD11 (ENSOARG00020013882) #24	CDK5R1 (ENSOARG00020014060) #25	MYO1D (ENSOARG00020014169) #26	RPS26 (ENSOARG00020016985)	TMEM98 (ENSOARG00020017022) #27	SPACA3 (ENSOARG00020017184) #28	ASIC2 (ENSOARG00020017317) #29	CCL2 (ENSOARG00020017573) #30	CCL11 (ENSOARG00020017624) #31	CCL8 (ENSOARG00020017661) #32	CCL1 (ENSOARG00020017691) ##30	TMEM132E (ENSOARG00020017730) #34	CCT6B (ENSOARG00020018028) #35	ZNF830 (ENSOARG00020018540) #36	LIG3 (ENSOARG00020018561) #37
Goat	MODERN SPECIES	10	EVI2A (ENSCHIG00000025780) #9	NF1 (ENSCHIG00000010629) #10	RAB11FIP4 (ENSCHIG00000019966) #11	ENSCHIG00000012864	COPRS (ENSCHIG00000018532) #12	ENSCHIG00000017954 #13	SUZ12 (ENSCHIG00000026246) #14	CRLF3 (ENSCHIG00000021351) #15	ATAD5 (ENSCHIG00000016940) #16	TEFM (ENSCHIG00000024685) #17	ADAP2 (ENSCHIG00000011945) #18	RNF135 (ENSCHIG00000022049) #19	RHOT1 (ENSCHIG00000015707) #20	RHBDL3 (ENSCHIG00000025504)	C17orf75 (ENSCHIG00000024915) #21	ZNF207 (ENSCHIG00000013026) #22	PSMD11 (ENSCHIG00000008139) #24	CDK5R1 (ENSCHIG00000004376) #25	MYO1D (ENSCHIG00000014922) #26	TMEM98 (ENSCHIG00000027044) #27	SPACA3 (ENSCHIG00000014732) #28	ASIC2 (ENSCHIG00000026032) #29	ENSCHIG00000014289 ##29	CCL2 (ENSCHIG00000023567) #30	CCL11 (ENSCHIG00000012968) #31	CCL8 (ENSCHIG00000020074) #32	ENSCHIG00000002408 #33	TMEM132E (ENSCHIG00000015468) #34	CCT6B (ENSCHIG00000023739) #35	ZNF830 (ENSCHIG00000012740) #36	LIG3 (ENSCHIG00000023884) #37
Siberian musk deer	MODERN SPECIES	1135	EVI2A (ENSMMSG00000005424) #9	NF1 (ENSMMSG00000004739) #10	RAB11FIP4 (ENSMMSG00000014971) #11	COPRS (ENSMMSG00000014900) #12	ENSMMSG00000014848 #13	SUZ12 (ENSMMSG00000014732) #14	ENSMMSG00000014703	CRLF3 (ENSMMSG00000014680) #15	ATAD5 (ENSMMSG00000014589) #16	TEFM (ENSMMSG00000014559) #17	ADAP2 (ENSMMSG00000014535) #18	RNF135 (ENSMMSG00000014522) #19	RHOT1 (ENSMMSG00000014399) #20	RHBDL3 (ENSMMSG00000014303)	C17orf75 (ENSMMSG00000014275) #21	ZNF207 (ENSMMSG00000014169) #22	PSMD11 (ENSMMSG00000014125) #24	CDK5R1 (ENSMMSG00000014112) #25	MYO1D (ENSMMSG00000014045) #26	TMEM98 (ENSMMSG00000013992) #27	SPACA3 (ENSMMSG00000013944) #28	ASIC2 (ENSMMSG00000013849) #29	CCL2 (ENSMMSG00000013816) #30	CCL11 (ENSMMSG00000013803) #31	CCL8 (ENSMMSG00000013783) #32	CCL1 (ENSMMSG00000013764) ##30	ENSMMSG00000013748	TMEM132E (ENSMMSG00000013674) #34	CCT6B (ENSMMSG00000013474) #35	ZNF830 (ENSMMSG00000013439) #36	LIG3 (ENSMMSG00000013344) #37
Yarkand deer	MODERN SPECIES	28	EVI2B (ENSCHYG00000007832) #8	EVI2A (ENSCHYG00000007807) #9	NF1 (ENSCHYG00000007674) #10	RAB11FIP4 (ENSCHYG00000007539) #11	ENSCHYG00000007474	COPRS (ENSCHYG00000007434) #12	ENSCHYG00000007381 #13	SUZ12 (ENSCHYG00000006992) #14	CRLF3 (ENSCHYG00000006890) #15	ATAD5 (ENSCHYG00000006843) #16	TEFM (ENSCHYG00000006805) #17	RNF135 (ENSCHYG00000006620) #19	RHOT1 (ENSCHYG00000006284) #20	RHBDL3 (ENSCHYG00000006168)	C17orf75 (ENSCHYG00000006089) #21	ZNF207 (ENSCHYG00000005793) #22	PSMD11 (ENSCHYG00000005685) #24	CDK5R1 (ENSCHYG00000005666) #25	MYO1D (ENSCHYG00000005522) #26	TMEM98 (ENSCHYG00000005448) #27	SPACA3 (ENSCHYG00000005400) #28	ENSCHYG00000005385	ENSCHYG00000005365	ASIC2 (ENSCHYG00000005233) #29	CCL2 (ENSCHYG00000004987) #30	CCL11 (ENSCHYG00000004959) #31	ENSCHYG00000004663 #32	ENSCHYG00000004652 #33	TMEM132E (ENSCHYG00000004615) #34	CCT6B (ENSCHYG00000004528) #35	ZNF830 (ENSCHYG00000004488) #36
Cetacea	ANCESTRAL SPECIES	5	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00490000044407	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Blue whale	MODERN SPECIES	12	OMG (ENSBMSG00010017364) #7	EVI2B (ENSBMSG00010017353) #8	EVI2A (ENSBMSG00010017340) #9	NF1 (ENSBMSG00010016830) #10	RAB11FIP4 (ENSBMSG00010016704) #11	COPRS (ENSBMSG00010016604) #12	UTP6 (ENSBMSG00010016566) #13	SUZ12 (ENSBMSG00010016507) #14	CRLF3 (ENSBMSG00010016451) #15	ATAD5 (ENSBMSG00010016293) #16	TEFM (ENSBMSG00010016257) #17	ADAP2 (ENSBMSG00010016222) #18	RHOT1 (ENSBMSG00010016141) #20	RHBDL3 (ENSBMSG00010016026)	C17orf75 (ENSBMSG00010015998) #21	ZNF207 (ENSBMSG00010015813) #22	PSMD11 (ENSBMSG00010015716) #24	CDK5R1 (ENSBMSG00010015699) #25	MYO1D (ENSBMSG00010015533) #26	TMEM98 (ENSBMSG00010015458) #27	SPACA3 (ENSBMSG00010015398) #28	ASIC2 (ENSBMSG00010015290) #29	CCL2 (ENSBMSG00010015239) #30	CCL7 (ENSBMSG00010015213) ##30	CCL11 (ENSBMSG00010015194) #31	CCL8 (ENSBMSG00010015171) #32	CCL1 (ENSBMSG00010015132) ##30	TMEM132E (ENSBMSG00010015019) #34	ENSBMSG00010014985	ZNF830 (ENSBMSG00010014976) #36	LIG3 (ENSBMSG00010014942) #37
Odontoceti	ANCESTRAL SPECIES	17	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00490000044407	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Sperm whale	MODERN SPECIES	12	STOX1 (ENSPCTG00005006234)	CCAR1 (ENSPCTG00005005994)	TET1 (ENSPCTG00005005923)	DNA2 (ENSPCTG00005005526)	HNRNPH3 (ENSPCTG00005005402)	RUFY2 (ENSPCTG00005005150)	PBLD (ENSPCTG00005005019)	ATOH7 (ENSPCTG00005004994)	MYPN (ENSPCTG00005004741)	HERC4 (ENSPCTG00005004555)	SIRT1 (ENSPCTG00005004488)	DNAJC12 (ENSPCTG00005004448)	ENSPCTG00005004399	LRRTM3 (ENSPCTG00005021822)	CTNNA3 (ENSPCTG00005021800)	ENSPCTG00005021784 #22	ENSPCTG00005021773	ENSPCTG00005021765	ENSPCTG00005021759	REEP3 (ENSPCTG00005021737)	JMJD1C (ENSPCTG00005021543)	NRBF2 (ENSPCTG00005021512)	EGR2 (ENSPCTG00005021490)	ADO (ENSPCTG00005021478)	ZNF365 (ENSPCTG00005021453)	RTKN2 (ENSPCTG00005021419)	ARID5B (ENSPCTG00005021363)	CABCOCO1 (ENSPCTG00005021317)	TMEM26 (ENSPCTG00005021293)	RHOBTB1 (ENSPCTG00005021266)	CDK1 (ENSPCTG00005021227)
Odontoceti_a	ANCESTRAL SPECIES	18	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00490000044407	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Dolphin	MODERN SPECIES	6504														RHBDL3 (ENSTTRG00000011323)	C17orf75 (ENSTTRG00000011316) #21	ZNF207 (ENSTTRG00000011300) #22
Odontoceti_b	ANCESTRAL SPECIES	20	ENSGT00550000074797.b #10	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT01010000228931
Monodontidae	ANCESTRAL SPECIES	21	ENSGT00550000074797.b #10	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT01010000228931	ENSGT00390000012151 #36
Narwhal	MODERN SPECIES	316	OMG (ENSMMNG00015020297) #7	EVI2B (ENSMMNG00015020306) #8	EVI2A (ENSMMNG00015020315) #9	RAB11FIP4 (ENSMMNG00015020333) #11	COPRS (ENSMMNG00015020405) #12	UTP6 (ENSMMNG00015020445) #13	SUZ12 (ENSMMNG00015020516) #14	CRLF3 (ENSMMNG00015020564) #15	ATAD5 (ENSMMNG00015020618) #16	ENSMMNG00015020651	TEFM (ENSMMNG00015020658) #17	ADAP2 (ENSMMNG00015020674) #18	RHOT1 (ENSMMNG00015020743) #20	RHBDL3 (ENSMMNG00015020871)	C17orf75 (ENSMMNG00015020915) #21	ZNF207 (ENSMMNG00015021000) #22	PSMD11 (ENSMMNG00015021150) #24	CDK5R1 (ENSMMNG00015021171) #25	MYO1D (ENSMMNG00015021191) #26	TMEM98 (ENSMMNG00015021221) #27	SPACA3 (ENSMMNG00015021243) #28	ASIC2 (ENSMMNG00015021265) #29	CCL2 (ENSMMNG00015021287) #30	ENSMMNG00015021298	CCL11 (ENSMMNG00015021303) #31	CCL8 (ENSMMNG00015021312) #32	ENSMMNG00015021318 ##30	CCL1 (ENSMMNG00015021332) ##30	TMEM132E (ENSMMNG00015021348) #34	ENSMMNG00015021366	ENSMMNG00015015650
Beluga whale	MODERN SPECIES	43	EVI2A (ENSDLEG00000005770) #9	NF1 (ENSDLEG00000004918) #10	RAB11FIP4 (ENSDLEG00000004705) #11	ENSDLEG00000004673 #12	UTP6 (ENSDLEG00000004635) #13	SUZ12 (ENSDLEG00000004558) #14	ENSDLEG00000004529	CRLF3 (ENSDLEG00000004508) #15	ENSDLEG00000004497	ATAD5 (ENSDLEG00000004353) #16	TEFM (ENSDLEG00000004305) #17	ADAP2 (ENSDLEG00000020513) #18	RHOT1 (ENSDLEG00000019806) #20	RHBDL3 (ENSDLEG00000019728)	C17orf75 (ENSDLEG00000019724) #21	ZNF207 (ENSDLEG00000019706) #22	PSMD11 (ENSDLEG00000019694) #24	CDK5R1 (ENSDLEG00000019689) #25	MYO1D (ENSDLEG00000019656) #26	TMEM98 (ENSDLEG00000019652) #27	SPACA3 (ENSDLEG00000019645) #28	ASIC2 (ENSDLEG00000019639) #29	ENSDLEG00000019633 ##29	CCL2 (ENSDLEG00000019628) #30	CCL11 (ENSDLEG00000019618) #31	ENSDLEG00000019603 #32	ENSDLEG00000019587	ENSDLEG00000019583	SPEM2 (ENSDLEG00000019571)	ENSDLEG00000019561	ENSDLEG00000019553
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	7	CCAR1 (ENSPSNG00000018574)	ENSPSNG00000018517	TET1 (ENSPSNG00000018401)	DNA2 (ENSPSNG00000018291)	RUFY2 (ENSPSNG00000018016)	HNRNPH3 (ENSPSNG00000017903)	PBLD (ENSPSNG00000017813)	ATOH7 (ENSPSNG00000017790)	MYPN (ENSPSNG00000017208)	HERC4 (ENSPSNG00000016699)	SIRT1 (ENSPSNG00000016409)	ENSPSNG00000016344	DNAJC12 (ENSPSNG00000016132)	LRRTM3 (ENSPSNG00000016050)	CTNNA3 (ENSPSNG00000015816)	ENSPSNG00000015753 #22	ENSPSNG00000015687	REEP3 (ENSPSNG00000015636)	JMJD1C (ENSPSNG00000015259)	NRBF2 (ENSPSNG00000015149)	EGR2 (ENSPSNG00000015063)	ADO (ENSPSNG00000015035)	ZNF365 (ENSPSNG00000014971)	RTKN2 (ENSPSNG00000014902)	ARID5B (ENSPSNG00000014736)	CABCOCO1 (ENSPSNG00000014615)	TMEM26 (ENSPSNG00000014493)	RHOBTB1 (ENSPSNG00000014292)	CDK1 (ENSPSNG00000014155)	ENSPSNG00000014083	ANK3 (ENSPSNG00000012368)
Vaquita	MODERN SPECIES	12	EVI2B (ENSPSNG00000021314) #8	EVI2A (ENSPSNG00000021323) #9	RAB11FIP4 (ENSPSNG00000021351) #11	COPRS (ENSPSNG00000021477) #12	UTP6 (ENSPSNG00000021544) #13	SUZ12 (ENSPSNG00000021611) #14	CRLF3 (ENSPSNG00000021636) #15	ENSPSNG00000021650	ATAD5 (ENSPSNG00000021738) #16	ENSPSNG00000022012	TEFM (ENSPSNG00000022020) #17	ADAP2 (ENSPSNG00000022035) #18	RHOT1 (ENSPSNG00000022092) #20	RHBDL3 (ENSPSNG00000022156)	C17orf75 (ENSPSNG00000022179) #21	ZNF207 (ENSPSNG00000022235) #22	PSMD11 (ENSPSNG00000022276) #24	MYO1D (ENSPSNG00000022301) #26	TMEM98 (ENSPSNG00000022321) #27	SPACA3 (ENSPSNG00000022329) #28	ASIC2 (ENSPSNG00000022343) #29	CCL2 (ENSPSNG00000022350) #30	ENSPSNG00000022355	ENSPSNG00000022365 #32	ENSPSNG00000022368 ##30	ENSPSNG00000022370 #33	ENSPSNG00000009585	ENSPSNG00000009606	ENSPSNG00000009692	ENSPSNG00000009744	ENSPSNG00000009891
Camelidae	ANCESTRAL SPECIES	46	ENSGT00550000074797.b #10	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	7	OMG (ENSCDRG00005016766) #7	EVI2B (ENSCDRG00005016784) #8	EVI2A (ENSCDRG00005016797) #9	ENSCDRG00005016822 #11	COPRS (ENSCDRG00005016899) #12	UTP6 (ENSCDRG00005016986) #13	SUZ12 (ENSCDRG00005017103) #14	CRLF3 (ENSCDRG00005017225) #15	ENSCDRG00005017338	ATAD5 (ENSCDRG00005017353) #16	TEFM (ENSCDRG00005017496) #17	ADAP2 (ENSCDRG00005017539) #18	RHOT1 (ENSCDRG00005017659) #20	RHBDL3 (ENSCDRG00005017971)	C17orf75 (ENSCDRG00005018024) #21	ENSCDRG00005018176 #22	PSMD11 (ENSCDRG00005018315) #24	CDK5R1 (ENSCDRG00005018360) #25	MYO1D (ENSCDRG00005018383) #26	TMEM98 (ENSCDRG00005018566) #27	ENSCDRG00005018607 #28	ENSCDRG00005018651 #28	ASIC2 (ENSCDRG00005018676) #29	CCL2 (ENSCDRG00005018730) #30	ENSCDRG00005018754 #31	CCL8 (ENSCDRG00005018771) #32	ENSCDRG00005018782 #33	TMEM132E (ENSCDRG00005018809) #34	CCT6B (ENSCDRG00005018987) #35	ZNF830 (ENSCDRG00005019235) #36	LIG3 (ENSCDRG00005019260) #37
Arabian camel	MODERN SPECIES	14	ENSCDRG00005014486	CLEC4G (ENSCDRG00005014424)	ENSCDRG00005014380	EVI5L (ENSCDRG00005014180)	PRR36 (ENSCDRG00005014132)	LRRC8E (ENSCDRG00005014110)	MAP2K7 (ENSCDRG00005013675)	TGFBR3L (ENSCDRG00005013598)	SNAPC2 (ENSCDRG00005013517)	CTXN1 (ENSCDRG00005013495)	TIMM44 (ENSCDRG00005013430)	ELAVL1 (ENSCDRG00005013355)	CCL25 (ENSCDRG00005013296)	FBN3 (ENSCDRG00005011636)	CERS4 (ENSCDRG00005011543)	ENSCDRG00005011484 #22	CD320 (ENSCDRG00005011455)	NDUFA7 (ENSCDRG00005011397)	RPS28 (ENSCDRG00005011369)	KANK3 (ENSCDRG00005011269)	ANGPTL4 (ENSCDRG00005011142)	RAB11B (ENSCDRG00005011000)	MARCHF2 (ENSCDRG00005010915)	HNRNPM (ENSCDRG00005010751)	PRAM1 (ENSCDRG00005010701)	ZNF414 (ENSCDRG00005010644)	MYO1F (ENSCDRG00005008914)	ADAMTS10 (ENSCDRG00005014083)	ACTL9 (ENSCDRG00005014023)	OR2Z1 (ENSCDRG00005013991)	ZNF558 (ENSCDRG00005013914)
Alpaca	MODERN SPECIES	254													RHOT1 (ENSVPAG00000002513) #20	ENSVPAG00000002517	C17orf75 (ENSVPAG00000002519) #21	ZNF207 (ENSVPAG00000002521) #22	PSMD11 (ENSVPAG00000002523) #24	MYO1D (ENSVPAG00000002525) #26	TMEM98 (ENSVPAG00000002527) #27
Suina	ANCESTRAL SPECIES		ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Chacoan peccary	MODERN SPECIES	144															C17orf75 (ENSCWAG00000013929) #21	ZNF207 (ENSCWAG00000013991) #22	PSMD11 (ENSCWAG00000014200) #24	CDK5R1 (ENSCWAG00000014253) #25	MYO1D (ENSCWAG00000014304) #26	TMEM98 (ENSCWAG00000014817) #27	SPACA3 (ENSCWAG00000014931) #28	ASIC2 (ENSCWAG00000015037) #29	CCL2 (ENSCWAG00000015205) #30	CCL11 (ENSCWAG00000015240) #31	CCL8 (ENSCWAG00000015268) #32	ENSCWAG00000015299 #33	TMEM132E (ENSCWAG00000015350) #34	CCT6B (ENSCWAG00000015565) #35	ZNF830 (ENSCWAG00000015919) #36	LIG3 (ENSCWAG00000015948) #37	RFFL (ENSCWAG00000016017)
Pig	MODERN SPECIES	3	EVI2B (ENSSSCG00000017750) #8	EVI2A (ENSSSCG00000017749) #9	NF1 (ENSSSCG00000017748) #10	RAB11FIP4 (ENSSSCG00000017747) #11	COPRS (ENSSSCG00000061452) #12	UTP6 (ENSSSCG00000017745) #13	SUZ12 (ENSSSCG00000017744) #14	CRLF3 (ENSSSCG00000017743) #15	ATAD5 (ENSSSCG00000035954) #16	TEFM (ENSSSCG00000017741) #17	ADAP2 (ENSSSCG00000017738) #18	RNF135 (ENSSSCG00000017737) #19	RHOT1 (ENSSSCG00000017735) #20	RHBDL3 (ENSSSCG00000017734)	C17orf75 (ENSSSCG00000017733) #21	ZNF207 (ENSSSCG00000017732) #22	PSMD11 (ENSSSCG00000017731) #24	CDK5R1 (ENSSSCG00000017730) #25	MYO1D (ENSSSCG00000017728) #26	TMEM98 (ENSSSCG00000017727) #27	SPACA3 (ENSSSCG00000017726) #28	ASIC2 (ENSSSCG00000040177) #29	ENSSSCG00000058804	ENSSSCG00000034396	ENSSSCG00000031620	CCL2 (ENSSSCG00000017723) #30	CCL11 (ENSSSCG00000044762) #31	CCL8 (ENSSSCG00000040648) #32	CCL1 (ENSSSCG00000017720) #33	TMEM132E (ENSSSCG00000022987) #34	CCT6B (ENSSSCG00000022196) #35
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00550000074797.b #10	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00390000003008	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a	ENSGT00940000159095	ENSGT00390000006458	ENSGT00940000157881
Equus	ANCESTRAL SPECIES		ENSGT00550000074797.b #10	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Horse	MODERN SPECIES	2	KSR1 (ENSECAG00000019816)	WSB1 (ENSECAG00000016726)	EVI2B (ENSECAG00000004162) #8	EVI2A (ENSECAG00000004031) #9	NF1 (ENSECAG00000008317) #10	RAB11FIP4 (ENSECAG00000006337) #11	UTP6 (ENSECAG00000022217) #13	SUZ12 (ENSECAG00000019997) #14	CRLF3 (ENSECAG00000019822) #15	ATAD5 (ENSECAG00000018443) #16	TEFM (ENSECAG00000058199) #17	ADAP2 (ENSECAG00000015333) #18	RNF135 (ENSECAG00000014806) #19	RHOT1 (ENSECAG00000009478) #20	C11H17orf75 (ENSECAG00000001756) #21	ZNF207 (ENSECAG00000017464) #22	PSMD11 (ENSECAG00000014306) #24	CDK5R1 (ENSECAG00000004006) #25	MYO1D (ENSECAG00000009709) #26	TMEM98 (ENSECAG00000007610) #27	SPACA3 (ENSECAG00000005842) #28	ASIC2 (ENSECAG00000000922) #29	CCL8 (ENSECAG00000034282) ##30	ENSECAG00000036873 #33	TMEM132E (ENSECAG00000023816) #34	ZNF830 (ENSECAG00000003872) #36	CCT6B (ENSECAG00000021342) #35	LIG3 (ENSECAG00000016416) #37	RFFL (ENSECAG00000015502)	RAD51D (ENSECAG00000014139)	FNDC8 (ENSECAG00000014023)
Donkey	MODERN SPECIES	4	ENSEASG00005010856 #7	EVI2B (ENSEASG00005030701) #8	EVI2A (ENSEASG00005010859) #9	RAB11FIP4 (ENSEASG00005010862) #11	UTP6 (ENSEASG00005010870) #13	ENSEASG00005010872 #14	ENSEASG00005010875 #15	ENSEASG00005010880 #16	TEFM (ENSEASG00005010887) #17	ADAP2 (ENSEASG00005010891) #18	ENSEASG00005029034	ENSEASG00005033664 #19	ENSEASG00005010897 #20	ENSEASG00005010901	C17orf75 (ENSEASG00005010904) #21	ZNF207 (ENSEASG00005010907) #22	PSMD11 (ENSEASG00005010909) #24	CDK5R1 (ENSEASG00005010912) #25	MYO1D (ENSEASG00005010913) #26	TMEM98 (ENSEASG00005010917) #27	SPACA3 (ENSEASG00005010921) #28	ASIC2 (ENSEASG00005010930) #29	ENSEASG00005001865	ENSEASG00005035074	CCL2 (ENSEASG00005026206) #30	CCL7 (ENSEASG00005028946) ##30	CCL11 (ENSEASG00005029284) #31	CCL8 (ENSEASG00005028357) #32	ENSEASG00005033288 ##30	ENSEASG00005036948 #33	TMEM132E (ENSEASG00005010955) #34
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a	ENSGT00940000159095	ENSGT00390000006458	ENSGT00940000157881
Megabat	MODERN SPECIES	3695																ZNF207 (ENSPVAG00000009766) #22	PSMD11 (ENSPVAG00000009767) #24
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a	ENSGT00940000159095	ENSGT00390000006458	ENSGT00940000157881
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1224											CA10 (ENSMLUG00000016229)	ENSMLUG00000028702	RHOT1 (ENSMLUG00000012605) #20	RHBDL3 (ENSMLUG00000007115)	C17orf75 (ENSMLUG00000007126) #21	ENSMLUG00000016085 #22	PSMD11 (ENSMLUG00000003874) #24	CDK5R1 (ENSMLUG00000025930) #25	MYO1D (ENSMLUG00000003887) #26	ENSMLUG00000001191 #27	SPACA3 (ENSMLUG00000001197) #28	ASIC2 (ENSMLUG00000001207) #29
Microbat	MODERN SPECIES	949								PDHA2 (ENSMLUG00000014449)	UNC5C (ENSMLUG00000009105)	BMPR1B (ENSMLUG00000009090)	PDLIM5 (ENSMLUG00000002083)	HPGDS (ENSMLUG00000000432)	SMARCAD1 (ENSMLUG00000000425)	ATOH1 (ENSMLUG00000008044)	GRID2 (ENSMLUG00000013810)	ENSMLUG00000029344 #22	ENSMLUG00000028227	ENSMLUG00000023642	CCSER1 (ENSMLUG00000013655)	MMRN1 (ENSMLUG00000000231)	SNCA (ENSMLUG00000008577)	ENSMLUG00000022411	FAM13A (ENSMLUG00000012281)	NAP1L5 (ENSMLUG00000012266)	HERC3 (ENSMLUG00000012241)	ENSMLUG00000030473	PYURF (ENSMLUG00000030624)	ENSMLUG00000023671	ENSMLUG00000012227	ENSMLUG00000027952	ENSMLUG00000026890
Greater horseshoe bat	MODERN SPECIES	13	RAB11FIP4 (ENSRFEG00010017596) #11	ENSRFEG00010017808	ENSRFEG00010017847	COPRS (ENSRFEG00010017903) #12	UTP6 (ENSRFEG00010017972) #13	SUZ12 (ENSRFEG00010018041) #14	CRLF3 (ENSRFEG00010018133) #15	ATAD5 (ENSRFEG00010018233) #16	TEFM (ENSRFEG00010018619) #17	ADAP2 (ENSRFEG00010018637) #18	RNF135 (ENSRFEG00010018686) #19	RHOT1 (ENSRFEG00010018815) #20	RHBDL3 (ENSRFEG00010019014)	C17orf75 (ENSRFEG00010019104) #21	ENSRFEG00010019127	ZNF207 (ENSRFEG00010019158) #22	ENSRFEG00010019307	PSMD11 (ENSRFEG00010019338) #24	CDK5R1 (ENSRFEG00010019423) #25	MYO1D (ENSRFEG00010019451) #26	ENSRFEG00010019534	TMEM98 (ENSRFEG00010019564) #27	SPACA3 (ENSRFEG00010019589) #28	ASIC2 (ENSRFEG00010019642) #29	ENSRFEG00010019773	CCL2 (ENSRFEG00010019809) #30	CCL8 (ENSRFEG00010019872) #32	TMEM132E (ENSRFEG00010019902) #34	CCT6B (ENSRFEG00010020082) #35	ZNF830 (ENSRFEG00010020329) #36	LIG3 (ENSRFEG00010020352) #37
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479.i #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Cat	MODERN SPECIES	245	OMG (ENSFCAG00000008854) #7	EVI2B (ENSFCAG00000006064) #8	EVI2A (ENSFCAG00000043747) #9	RAB11FIP4 (ENSFCAG00000006068) #11	COPRS (ENSFCAG00000015794) #12	UTP6 (ENSFCAG00000015795) #13	SUZ12 (ENSFCAG00000023797) #14	CRLF3 (ENSFCAG00000025986) #15	ATAD5 (ENSFCAG00000006895) #16	TEFM (ENSFCAG00000022086) #17	ADAP2 (ENSFCAG00000012459) #18	ENSFCAG00000009132 #19	RHOT1 (ENSFCAG00000015378) #20	RHBDL3 (ENSFCAG00000015381)	CE1H17orf75 (ENSFCAG00000025653) #21	ZNF207 (ENSFCAG00000015387) #22	ENSFCAG00000028860	PSMD11 (ENSFCAG00000002060) #24	CDK5R1 (ENSFCAG00000008545) #25	MYO1D (ENSFCAG00000012420) #26	TMEM98 (ENSFCAG00000000912) #27	SPACA3 (ENSFCAG00000000913) #28	ASIC2 (ENSFCAG00000018329) #29	CCL2 (ENSFCAG00000038488) #30	CCL7 (ENSFCAG00000045217) ##30	CCL8 (ENSFCAG00000013594) #32	CCL13 (ENSFCAG00000026454) ##30	ENSFCAG00000032743 #33	TMEM132E (ENSFCAG00000022991) #34	CCT6B (ENSFCAG00000022789) #35	LIG3 (ENSFCAG00000000249) #37
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01060000248892	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01040000242096	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479.i #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Tiger	MODERN SPECIES	76	EVI2B (ENSPTIG00000002057) #8	EVI2A (ENSPTIG00000021682) #9	NF1 (ENSPTIG00000019194) #10	RAB11FIP4 (ENSPTIG00000016907) #11	COPRS (ENSPTIG00000016317) #12	UTP6 (ENSPTIG00000013913) #13	SUZ12 (ENSPTIG00000010329) #14	CRLF3 (ENSPTIG00000009626) #15	ATAD5 (ENSPTIG00000006424) #16	TEFM (ENSPTIG00000004505) #17	ADAP2 (ENSPTIG00000021798) #18	ENSPTIG00000021371 #19	RHOT1 (ENSPTIG00000010535) #20	RHBDL3 (ENSPTIG00000006273)	C17orf75 (ENSPTIG00000001419) #21	ZNF207 (ENSPTIG00000016631) #22	PSMD11 (ENSPTIG00000014305) #24	CDK5R1 (ENSPTIG00000000341) #25	MYO1D (ENSPTIG00000007889) #26	TMEM98 (ENSPTIG00000004532) #27	SPACA3 (ENSPTIG00000000021) #28	ASIC2 (ENSPTIG00000021857) #29
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01060000248892	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01040000242096	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479.i #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
leopard	MODERN SPECIES	96	EVI2B (ENSPPRG00000018243) #8	EVI2A (ENSPPRG00000003824) #9	RAB11FIP4 (ENSPPRG00000003276) #11	COPRS (ENSPPRG00000001459) #12	UTP6 (ENSPPRG00000001010) #13	SUZ12 (ENSPPRG00000021306) #14	CRLF3 (ENSPPRG00000020201) #15	ATAD5 (ENSPPRG00000018417) #16	TEFM (ENSPPRG00000015099) #17	ADAP2 (ENSPPRG00000014777) #18	ENSPPRG00000011923	RNF135 (ENSPPRG00000011481) #19	RHOT1 (ENSPPRG00000010338) #20	RHBDL3 (ENSPPRG00000006776)	C17orf75 (ENSPPRG00000002407) #21	ZNF207 (ENSPPRG00000001689) #22	PSMD11 (ENSPPRG00000023389) #24	CDK5R1 (ENSPPRG00000017589) #25	MYO1D (ENSPPRG00000024181) #26	TMEM98 (ENSPPRG00000014217) #27	SPACA3 (ENSPPRG00000013306) #28	ASIC2 (ENSPPRG00000011981) #29	ENSPPRG00000009983	ENSPPRG00000009828	CCL8 (ENSPPRG00000009741) #32	CCL13 (ENSPPRG00000009433) ##30	ENSPPRG00000008979 #33	TMEM132E (ENSPPRG00000008656) #34	CCT6B (ENSPPRG00000007926) #35	ZNF830 (ENSPPRG00000017044) #36	LIG3 (ENSPPRG00000005157) #37
lion	MODERN SPECIES	14	OMG (ENSPLOG00000013157) #7	EVI2B (ENSPLOG00000013180) #8	EVI2A (ENSPLOG00000013199) #9	RAB11FIP4 (ENSPLOG00000013242) #11	COPRS (ENSPLOG00000013486) #12	UTP6 (ENSPLOG00000013575) #13	SUZ12 (ENSPLOG00000013650) #14	CRLF3 (ENSPLOG00000013965) #15	ATAD5 (ENSPLOG00000014072) #16	TEFM (ENSPLOG00000014129) #17	ADAP2 (ENSPLOG00000014207) #18	ENSPLOG00000014267 #19	RHOT1 (ENSPLOG00000014449) #20	RHBDL3 (ENSPLOG00000014660)	C17orf75 (ENSPLOG00000014757) #21	ZNF207 (ENSPLOG00000014967) #22	ENSPLOG00000015470	PSMD11 (ENSPLOG00000015536) #24	CDK5R1 (ENSPLOG00000015588) #25	MYO1D (ENSPLOG00000015637) #26	TMEM98 (ENSPLOG00000015789) #27	SPACA3 (ENSPLOG00000015896) #28	ASIC2 (ENSPLOG00000015956) #29	ENSPLOG00000016136	CCL2 (ENSPLOG00000016154) #30	ENSPLOG00000016184	CCL8 (ENSPLOG00000008313) #32	CCL13 (ENSPLOG00000008357) ##30	ENSPLOG00000008391 #33	TMEM132E (ENSPLOG00000008445) #34	CCT6B (ENSPLOG00000008659) #35
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00740000117022	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Ferret	MODERN SPECIES	181	EVI2B (ENSMPUG00000019512) #8	RAB11FIP4 (ENSMPUG00000014571) #11	ENSMPUG00000014576	COPRS (ENSMPUG00000014579) #12	UTP6 (ENSMPUG00000014581) #13	ENSMPUG00000014639	SUZ12 (ENSMPUG00000014641) #14	CRLF3 (ENSMPUG00000014670) #15	ATAD5 (ENSMPUG00000014687) #16	TEFM (ENSMPUG00000014690) #17	ADAP2 (ENSMPUG00000014694) #18	RNF135 (ENSMPUG00000014696) #19	RHOT1 (ENSMPUG00000014703) #20	RHBDL3 (ENSMPUG00000014711)	C17orf75 (ENSMPUG00000014757) #21	ZNF207 (ENSMPUG00000014761) #22	PSMD11 (ENSMPUG00000014767) #24	CDK5R1 (ENSMPUG00000019514) #25	MYO1D (ENSMPUG00000014772) #26	ENSMPUG00000014779	TMEM98 (ENSMPUG00000014780) #27	SPACA3 (ENSMPUG00000014796) #28	ASIC2 (ENSMPUG00000014834) #29	ENSMPUG00000014838	ENSMPUG00000014840	CCL2 (ENSMPUG00000014841) #30	CCL7 (ENSMPUG00000014843) ##30	CCL8 (ENSMPUG00000014845) #32	CCL13 (ENSMPUG00000014846) ##30	ENSMPUG00000014849 #33	TMEM132E (ENSMPUG00000014852) #34
American mink	MODERN SPECIES	37	OMG (ENSNVIG00000018705) #7	EVI2B (ENSNVIG00000018709) #8	EVI2A (ENSNVIG00000018714) #9	ENSNVIG00000018723 #11	COPRS (ENSNVIG00000018741) #12	UTP6 (ENSNVIG00000018745) #13	SUZ12 (ENSNVIG00000018784) #14	CRLF3 (ENSNVIG00000018811) #15	ATAD5 (ENSNVIG00000018837) #16	ENSNVIG00000018890 #17	ADAP2 (ENSNVIG00000018896) #18	ENSNVIG00000018939 #19	RHOT1 (ENSNVIG00000018960) #20	RHBDL3 (ENSNVIG00000019290)	NJMU (ENSNVIG00000019347) #21	ZNF207 (ENSNVIG00000019388) #22	PSMD11 (ENSNVIG00000019522) #24	CD5R1 (ENSNVIG00000019539) #25	MYO1D (ENSNVIG00000019549) #26	TMM98 (ENSNVIG00000019571) #27	SPACA3 (ENSNVIG00000019598) #28	ASIC2 (ENSNVIG00000019610) #29	CCL2 (ENSNVIG00000019643) #30	ENSNVIG00000019653	CCL8 (ENSNVIG00000019665) #32	CCL13 (ENSNVIG00000019676) ##30	CCL1 (ENSNVIG00000019684) ##30	TMEM132E (ENSNVIG00000019694) #34	CCT6B (ENSNVIG00000019712) #35	ZNF830 (ENSNVIG00000019817) #36	LIG3 (ENSNVIG00000019831) #37
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Ursus	ANCESTRAL SPECIES	8	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449 #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00940000153112.E.f.b.c.b	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000156339 #35	ENSGT00390000012151 #36
American black bear	MODERN SPECIES	135														RHBDL3 (ENSUAMG00000002279)	C17orf75 (ENSUAMG00000002234) #21	ZNF207 (ENSUAMG00000002209) #22
Polar bear	MODERN SPECIES	192	OMG (ENSUMAG00000015106) #7	EVI2B (ENSUMAG00000015108) #8	EVI2A (ENSUMAG00000015109) #9	RAB11FIP4 (ENSUMAG00000015115) #11	COPRS (ENSUMAG00000015132) #12	UTP6 (ENSUMAG00000015139) #13	SUZ12 (ENSUMAG00000015161) #14	CRLF3 (ENSUMAG00000015224) #15	ATAD5 (ENSUMAG00000015244) #16	TEFM (ENSUMAG00000015276) #17	ADAP2 (ENSUMAG00000015291) #18	ENSUMAG00000015298 #19	RHOT1 (ENSUMAG00000015308) #20	RHBDL3 (ENSUMAG00000015318)	C17orf75 (ENSUMAG00000015332) #21	ZNF207 (ENSUMAG00000015371) #22	PSMD11 (ENSUMAG00000015400) #24	CDK5R1 (ENSUMAG00000015534) #25	MYO1D (ENSUMAG00000015550) #26	ENSUMAG00000015571	TMEM98 (ENSUMAG00000015573) #27	ENSUMAG00000015581 #28	ASIC2 (ENSUMAG00000015591) #29	ENSUMAG00000015601 ##29	CCL2 (ENSUMAG00000015604) #30	CCL7 (ENSUMAG00000015608) ##30	CCL8 (ENSUMAG00000015612) #32	CCL13 (ENSUMAG00000015615) ##30	ENSUMAG00000015623 #33	CCT6B (ENSUMAG00000015641) #35	ZNF830 (ENSUMAG00000015731) #36
Giant Panda	MODERN SPECIES	4	ENSAMEG00000005313 #10	ENSAMEG00000019807 #7	EVI2B (ENSAMEG00000019814) #8	EVI2A (ENSAMEG00000005406) #9	RAB11FIP4 (ENSAMEG00000005409) #11	COPRS (ENSAMEG00000005439) #12	UTP6 (ENSAMEG00000005443) #13	ENSAMEG00000005490 #14	ENSAMEG00000005514 #15	ENSAMEG00000005534 #16	TEFM (ENSAMEG00000005559) #17	ENSAMEG00000005566 #18	ENSAMEG00000005578 #20	ENSAMEG00000005643	C17orf75 (ENSAMEG00000005662) #21	ZNF207 (ENSAMEG00000005671) #22	PSMD11 (ENSAMEG00000005693) #24	CDK5R1 (ENSAMEG00000019817) #25	MYO1D (ENSAMEG00000005735) #26	TMEM98 (ENSAMEG00000026035) #27	SPACA3 (ENSAMEG00000005761) #28	ASIC2 (ENSAMEG00000005774) #29	ENSAMEG00000025929 #30	CCL7 (ENSAMEG00000028962) ##30	CCL8 (ENSAMEG00000029965) #32	CCL13 (ENSAMEG00000023685) ##30	CCL1 (ENSAMEG00000005795) ##30	TMEM132E (ENSAMEG00000014409) #34	CCT6B (ENSAMEG00000014473) #35	ZNF830 (ENSAMEG00000019495) #36	LIG3 (ENSAMEG00000014509) #37
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449.a #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT00940000154991.a.b ##29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Red fox	MODERN SPECIES	20	DKC1 (ENSVVUG00000020734)	MPP1 (ENSVVUG00000020728)	F8 (ENSVVUG00000020717)	FUNDC2 (ENSVVUG00000020713)	CMC4 (ENSVVUG00000020710)	MTCP1 (ENSVVUG00000020711)	ENSVVUG00000020709	ENSVVUG00000020707	ENSVVUG00000020703	ADAP2 (ENSVVUG00000020701) #18	RNF135 (ENSVVUG00000020698) #19	ENSVVUG00000020695	RHOT1 (ENSVVUG00000020640) #20	RHBDL3 (ENSVVUG00000020629)	CUNH17orf75 (ENSVVUG00000020625) #21	ZNF207 (ENSVVUG00000020618) #22	PSMD11 (ENSVVUG00000020613) #24	CDK5R1 (ENSVVUG00000020611) #25	MYO1D (ENSVVUG00000020589) #26	TMEM98 (ENSVVUG00000020587) #27	SPACA3 (ENSVVUG00000020586) #28	ASIC2 (ENSVVUG00000020562) #29	ENSVVUG00000020545 ##29	CCL2 (ENSVVUG00000020543) #30	CCL8 (ENSVVUG00000020542) #32	ENSVVUG00000020541 ##30	CCL1 (ENSVVUG00000020540) ##30	TMEM132E (ENSVVUG00000020524) #34	CCT6B (ENSVVUG00000020499) #35	ZNF830 (ENSVVUG00000020495) #36	LIG3 (ENSVVUG00000020483) #37
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000160802 #7	ENSGT00390000009142 #8	ENSGT00390000003004 #9	ENSGT00440000033742.a.b #11	ENSGT00390000007384 #12	ENSGT00390000016493 #13	ENSGT00390000012364 #14	ENSGT00940000153469.a.b #15	ENSGT00940000153469.a.a #16	ENSGT00390000010581 #17	ENSGT00940000156498 #18	ENSGT00830000128449.a #19	ENSGT00940000155641 #20	ENSGT00940000158838	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #24	ENSGT00390000008812.b.b #25	ENSGT00940000157411 #26	ENSGT00390000012062 #27	ENSGT00940000161810 #28	ENSGT00940000154991.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Dingo	DUPLICATION
Dingo	MODERN SPECIES	150														ENSCAFG00020014255 #21	ENSCAFG00020014254 #21	ENSCAFG00020014249 #22	PSMD11 (ENSCAFG00020014246) #24	CDK5R1 (ENSCAFG00020014244) #25	MYO1D (ENSCAFG00020014232) #26	TMEM98 (ENSCAFG00020014224) #27	ENSCAFG00020014220 #28	ASIC2 (ENSCAFG00020014212) #29	ENSCAFG00020014208	ENSCAFG00020014206 #30	CCL7 (ENSCAFG00020014205) ##30	CCL8 (ENSCAFG00020014202) #32	CCL13 (ENSCAFG00020014200) ##30	ENSCAFG00020014197 ##30	TMEM132E (ENSCAFG00020014170) #34	ENSCAFG00020014164	ENSCAFG00020014162
Dingo	MODERN SPECIES	327	ENSCAFG00020014662	RAB11FIP4 (ENSCAFG00020014665) #11	ENSCAFG00020014676	UTP6 (ENSCAFG00020014678) #13	SUZ12 (ENSCAFG00020014688) #14	CRLF3 (ENSCAFG00020014745) #15	ATAD5 (ENSCAFG00020014749) #16	TEFM (ENSCAFG00020014756) #17	ADAP2 (ENSCAFG00020014760) #18	ENSCAFG00020014771 #19	ENSCAFG00020014772 #19	RHOT1 (ENSCAFG00020014790) #20	RHBDL3 (ENSCAFG00020016379)	ENSCAFG00020016390 #21	ENSCAFG00020016393 #21	ENSCAFG00020016397 #22
Dog	DUPLICATION
Dog	MODERN SPECIES	37	EVI2A (ENSCAFG00845014271) #9	ENSCAFG00845014199 #10	RAB11FIP4 (ENSCAFG00845014090) #11	COPRS (ENSCAFG00845014015) #12	UTP6 (ENSCAFG00845013931) #13	SUZ12 (ENSCAFG00845013827) #14	ENSCAFG00845013766 #15	ATAD5 (ENSCAFG00845013608) #16	TEFM (ENSCAFG00845013524) #17	ADAP2 (ENSCAFG00845013471) #18	RNF135 (ENSCAFG00845013351) #19	ENSCAFG00845013335	RHOT1 (ENSCAFG00845012939) #20	RHBDL3 (ENSCAFG00845012661)	C17orf75 (ENSCAFG00845012586) #21	ZNF207 (ENSCAFG00845012267) #22	PSMD11 (ENSCAFG00845012106) #24	CDK5R1 (ENSCAFG00845012076) #25	MYO1D (ENSCAFG00845011784) #26	TMEM98 (ENSCAFG00845011666) #27	SPACA3 (ENSCAFG00845011594) #28	ASIC2 (ENSCAFG00845011475) #29	CCL2 (ENSCAFG00845011375) #30	CCL8 (ENSCAFG00845011338) #32	CCL1 (ENSCAFG00845011240) #33	CCL13 (ENSCAFG00845011162) ##30	TMEM132E (ENSCAFG00845011068) #34	ENSCAFG00845011012	CCT6B (ENSCAFG00845010909) #35	ZNF830 (ENSCAFG00845010855) #36	LIG3 (ENSCAFG00845010737) #37
Dog	MODERN SPECIES	2	BTNL9 (ENSCAFG00845005351)	OR2T26 (ENSCAFG00845005372)	ENSCAFG00845005382	TRIM7 (ENSCAFG00845005395)	TRIM41 (ENSCAFG00845005431)	RACK1 (ENSCAFG00845005488)	ENSCAFG00845005544	ENSCAFG00845005562	ENSCAFG00845005580	ENSCAFG00845005606	ENSCAFG00845005621	IFGGC1 (ENSCAFG00845005668)	ENSCAFG00845005718	IFGGB2 (ENSCAFG00845005769)	ENSCAFG00845005800	ENSCAFG00845005821 #22	ENSCAFG00845005841	ENSCAFG00845006015	CNOT6 (ENSCAFG00845006394)	ENSCAFG00845006420	GFPT2 (ENSCAFG00845006488)	MAPK9 (ENSCAFG00845006710)	RASGEF1C (ENSCAFG00845006880)	RNF130 (ENSCAFG00845007023)	TBC1D9B (ENSCAFG00845007248)	ENSCAFG00845007488	SQSTM1 (ENSCAFG00845007599)	MGAT4B (ENSCAFG00845007711)	LTC4S (ENSCAFG00845007863)	MAML1 (ENSCAFG00845007951)	CANX (ENSCAFG00845008030)