Boreoeutheria	ANCESTRAL SPECIES	4	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01100000263482.A.a.a.c.a ##30
Laurasiatheria	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33
Laurasiatheria_a	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34
Artiodactyla	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Artiodactyla_a	ANCESTRAL SPECIES	3	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Artiodactyla_b	ANCESTRAL SPECIES	3	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Pecora	ANCESTRAL SPECIES	1	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Percora_a	ANCESTRAL SPECIES	2	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Bovidae	ANCESTRAL SPECIES	2	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.i #12	ENSGT00390000012364 #13	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Caprinae	ANCESTRAL SPECIES	1	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.i #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Goat	MODERN SPECIES	10	EVI2A (ENSCHIG00000025780) #7	NF1 (ENSCHIG00000010629) #8	RAB11FIP4 (ENSCHIG00000019966) #9	ENSCHIG00000012864 #10	COPRS (ENSCHIG00000018532) #11	ENSCHIG00000017954 #12	SUZ12 (ENSCHIG00000026246) #13	CRLF3 (ENSCHIG00000021351) #14	ATAD5 (ENSCHIG00000016940) #15	TEFM (ENSCHIG00000024685) #16	ADAP2 (ENSCHIG00000011945) #17	RNF135 (ENSCHIG00000022049) #18	RHOT1 (ENSCHIG00000015707) #19	RHBDL3 (ENSCHIG00000025504) #20	C17orf75 (ENSCHIG00000024915) #21	ZNF207 (ENSCHIG00000013026) #22	PSMD11 (ENSCHIG00000008139) #23	CDK5R1 (ENSCHIG00000004376) #24	MYO1D (ENSCHIG00000014922) #25	TMEM98 (ENSCHIG00000027044) #26	SPACA3 (ENSCHIG00000014732) #27	ASIC2 (ENSCHIG00000026032) #28	ENSCHIG00000014289 #29	CCL2 (ENSCHIG00000023567) #30	CCL11 (ENSCHIG00000012968) #31	CCL8 (ENSCHIG00000020074) #32	ENSCHIG00000002408 #33	TMEM132E (ENSCHIG00000015468) #34	CCT6B (ENSCHIG00000023739) #35	ZNF830 (ENSCHIG00000012740) #36	LIG3 (ENSCHIG00000023884) #37
Rambouillet Sheep	MODERN SPECIES	2	EVI2B (ENSOARG00020010685)	EVI2A (ENSOARG00020010709) #7	RAB11FIP4 (ENSOARG00020010743) #9	ENSOARG00020011158 #11	ENSOARG00020011224 #11	UTP6 (ENSOARG00020011367) #12	SUZ12 (ENSOARG00020011487) #13	CRLF3 (ENSOARG00020011795) #14	ENSOARG00020011916	TEFM (ENSOARG00020011981) #16	ADAP2 (ENSOARG00020012053) #17	RNF135 (ENSOARG00020012111) #18	RHOT1 (ENSOARG00020012187) #19	RHBDL3 (ENSOARG00020012523) #20	C17orf75 (ENSOARG00020012947) #21	ZNF207 (ENSOARG00020013074) #22	PSMD11 (ENSOARG00020013882) #23	CDK5R1 (ENSOARG00020014060) #24	MYO1D (ENSOARG00020014169) #25	RPS26 (ENSOARG00020016985)	TMEM98 (ENSOARG00020017022) #26	SPACA3 (ENSOARG00020017184) #27	ASIC2 (ENSOARG00020017317) #28	CCL2 (ENSOARG00020017573) #30	CCL11 (ENSOARG00020017624) #31	CCL8 (ENSOARG00020017661) #32	CCL1 (ENSOARG00020017691) ##30	TMEM132E (ENSOARG00020017730) #34	CCT6B (ENSOARG00020018028) #35	ZNF830 (ENSOARG00020018540) #36	LIG3 (ENSOARG00020018561) #37
Bovinae	ANCESTRAL SPECIES		ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.i #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
American bison	MODERN SPECIES	3331	EVI2A (ENSBBBG00000016984) #7	RAB11FIP4 (ENSBBBG00000016968) #9	ENSBBBG00000016891	COPRS (ENSBBBG00000016861) #11	ENSBBBG00000004167 #12	SUZ12 (ENSBBBG00000004153) #13	CRLF3 (ENSBBBG00000007423) #14	ENSBBBG00000016709	ATAD5 (ENSBBBG00000016688) #15	TEFM (ENSBBBG00000016527) #16	ADAP2 (ENSBBBG00000016491) #17	RNF135 (ENSBBBG00000008504) #18	RHOT1 (ENSBBBG00000004063) #19	RHBDL3 (ENSBBBG00000016033) #20	C17orf75 (ENSBBBG00000016016) #21	ZNF207 (ENSBBBG00000003982) #22	PSMD11 (ENSBBBG00000015842) #23	CDK5R1 (ENSBBBG00000015765) #24	MYO1D (ENSBBBG00000015737) #25	TMEM98 (ENSBBBG00000015612) #26	SPACA3 (ENSBBBG00000003890) #27	ASIC2 (ENSBBBG00000000789) #28	CCL2 (ENSBBBG00000015537) #30	CCL11 (ENSBBBG00000015529) #31	ENSBBBG00000015515 #32	TMEM132E (ENSBBBG00000003856) #34	CCT6B (ENSBBBG00000015432) #35	ZNF830 (ENSBBBG00000003814) #36	LIG3 (ENSBBBG00000003485) #37	RFFL (ENSBBBG00000001330)	RAD51D (ENSBBBG00000015308)
Bos	ANCESTRAL SPECIES	1	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.i #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Bos_a	ANCESTRAL SPECIES		ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.i #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Wild yak	MODERN SPECIES	829	EVI2B (ENSBMUG00000011238)	EVI2A (ENSBMUG00000011235) #7	NF1 (ENSBMUG00000011111) #8	RAB11FIP4 (ENSBMUG00000010684) #9	COPRS (ENSBMUG00000010623) #11	UTP6 (ENSBMUG00000010588) #12	SUZ12 (ENSBMUG00000010551) #13	ENSBMUG00000010522 #14	ATAD5 (ENSBMUG00000010450) #15	TEFM (ENSBMUG00000010384) #16	ADAP2 (ENSBMUG00000010349) #17	ENSBMUG00000010324 #18	RHOT1 (ENSBMUG00000010283) #19	RHBDL3 (ENSBMUG00000010162) #20	ENSBMUG00000010140 #21	ZNF207 (ENSBMUG00000010122) #22	PSMD11 (ENSBMUG00000010031) #23	CDK5R1 (ENSBMUG00000010012) #24	MYO1D (ENSBMUG00000009987) #25	TMEM98 (ENSBMUG00000009909) #26	SPACA3 (ENSBMUG00000009900) #27	ASIC2 (ENSBMUG00000009872) #28
Domestic yak	MODERN SPECIES	10	OMG (ENSBGRG00000015564)	EVI2B (ENSBGRG00000015582)	EVI2A (ENSBGRG00000015599) #7	RAB11FIP4 (ENSBGRG00000015654) #9	UTP6 (ENSBGRG00000016004) #12	SUZ12 (ENSBGRG00000016989) #13	CRLF3 (ENSBGRG00000017273) #14	ENSBGRG00000017421	ATAD5 (ENSBGRG00000017486) #15	TEFM (ENSBGRG00000018181) #16	ADAP2 (ENSBGRG00000018321) #17	RNF135 (ENSBGRG00000018378) #18	RHOT1 (ENSBGRG00000018417) #19	RHBDL3 (ENSBGRG00000018758) #20	C17orf75 (ENSBGRG00000018880) #21	ZNF207 (ENSBGRG00000018994) #22	ENSBGRG00000019374	PSMD11 (ENSBGRG00000019390) #23	CDK5R1 (ENSBGRG00000019524) #24	MYO1D (ENSBGRG00000019568) #25	TMEM98 (ENSBGRG00000019780) #26	ENSBGRG00000019895 #27	ASIC2 (ENSBGRG00000019964) #28	ENSBGRG00000020251 #30	CCL11 (ENSBGRG00000020299) #31	ENSBGRG00000020373 #32	ENSBGRG00000020420 #33	TMEM132E (ENSBGRG00000020451) #34	CCT6B (ENSBGRG00000020692) #35	ZNF830 (ENSBGRG00000021136) #36	LIG3 (ENSBGRG00000021180) #37
Bos_b	ANCESTRAL SPECIES	38			ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.i #12	ENSGT00390000012364 #13	ENSGT00390000010799.u.a.j	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Cow	MODERN SPECIES	10	ENSBTAG00000050242 #8	RAB11FIP4 (ENSBTAG00000016972) #9	COPRS (ENSBTAG00000049483) #11	UTP6 (ENSBTAG00000015612) #12	SUZ12 (ENSBTAG00000018752) #13	ENSBTAG00000025202	CRLF3 (ENSBTAG00000018381) #14	ATAD5 (ENSBTAG00000018383) #15	ENSBTAG00000051813	TEFM (ENSBTAG00000018386) #16	ADAP2 (ENSBTAG00000003334) #17	RNF135 (ENSBTAG00000017225) #18	RHOT1 (ENSBTAG00000010001) #19	RHBDL3 (ENSBTAG00000020992) #20	C19H17orf75 (ENSBTAG00000020994) #21	ZNF207 (ENSBTAG00000008883) #22	PSMD11 (ENSBTAG00000018897) #23	CDK5R1 (ENSBTAG00000004475) #24	MYO1D (ENSBTAG00000015527) #25	TMEM98 (ENSBTAG00000008913) #26	SPACA3 (ENSBTAG00000000344) #27	ASIC2 (ENSBTAG00000025200) #28	CCL2 (ENSBTAG00000037811) #30	CCL11 (ENSBTAG00000004129) #31	CCL8 (ENSBTAG00000014113) #32	CCL1 (ENSBTAG00000008832) #33	TMEM132E (ENSBTAG00000002680) #34	CCT6B (ENSBTAG00000020338) #35	ZNF830 (ENSBTAG00000020340) #36	LIG3 (ENSBTAG00000018689) #37	RFFL (ENSBTAG00000013645)
Hybrid Bos Indicus	MODERN SPECIES	10	OMG (ENSBIXG00005002940)	EVI2B (ENSBIXG00005018145)	EVI2A (ENSBIXG00005018153) #7	NF1 (ENSBIXG00005018607) #8	RAB11FIP4 (ENSBIXG00005018731) #9	COPRS (ENSBIXG00005018823) #11	UTP6 (ENSBIXG00005018868) #12	SUZ12 (ENSBIXG00005000054) #13	CRLF3 (ENSBIXG00005003096) #14	ATAD5 (ENSBIXG00005002643) #15	TEFM (ENSBIXG00005019077) #16	ADAP2 (ENSBIXG00005006808) #17	RNF135 (ENSBIXG00005019124) #18	RHOT1 (ENSBIXG00005019289) #19	C17orf75 (ENSBIXG00005006030) #21	ZNF207 (ENSBIXG00005019493) #22	ENSBIXG00005019526	PSMD11 (ENSBIXG00005019559) #23	CDK5R1 (ENSBIXG00005019571) #24	MYO1D (ENSBIXG00005019665) #25	TMEM98 (ENSBIXG00005019737) #26	ENSBIXG00005019792 #27	ASIC2 (ENSBIXG00005006881) #28	CCL2 (ENSBIXG00005006654) #30	CCL11 (ENSBIXG00005003267) #31	ENSBIXG00005019984 #32	ENSBIXG00005003275 #33	TMEM132E (ENSBIXG00005003295) #34	CCT6B (ENSBIXG00005020356) #35	ZNF830 (ENSBIXG00005000019) #36	LIG3 (ENSBIXG00005020425) #37
Siberian musk deer	MODERN SPECIES	1135	EVI2A (ENSMMSG00000005424) #7	NF1 (ENSMMSG00000004739) #8	RAB11FIP4 (ENSMMSG00000014971) #9	COPRS (ENSMMSG00000014900) #11	ENSMMSG00000014848 #12	SUZ12 (ENSMMSG00000014732) #13	ENSMMSG00000014703	CRLF3 (ENSMMSG00000014680) #14	ATAD5 (ENSMMSG00000014589) #15	TEFM (ENSMMSG00000014559) #16	ADAP2 (ENSMMSG00000014535) #17	RNF135 (ENSMMSG00000014522) #18	RHOT1 (ENSMMSG00000014399) #19	RHBDL3 (ENSMMSG00000014303) #20	C17orf75 (ENSMMSG00000014275) #21	ZNF207 (ENSMMSG00000014169) #22	PSMD11 (ENSMMSG00000014125) #23	CDK5R1 (ENSMMSG00000014112) #24	MYO1D (ENSMMSG00000014045) #25	TMEM98 (ENSMMSG00000013992) #26	SPACA3 (ENSMMSG00000013944) #27	ASIC2 (ENSMMSG00000013849) #28	CCL2 (ENSMMSG00000013816) #30	CCL11 (ENSMMSG00000013803) #31	CCL8 (ENSMMSG00000013783) #32	CCL1 (ENSMMSG00000013764) ##30	ENSMMSG00000013748	TMEM132E (ENSMMSG00000013674) #34	CCT6B (ENSMMSG00000013474) #35	ZNF830 (ENSMMSG00000013439) #36	LIG3 (ENSMMSG00000013344) #37
Yarkand deer	MODERN SPECIES	28	EVI2B (ENSCHYG00000007832)	EVI2A (ENSCHYG00000007807) #7	NF1 (ENSCHYG00000007674) #8	RAB11FIP4 (ENSCHYG00000007539) #9	ENSCHYG00000007474	COPRS (ENSCHYG00000007434) #11	ENSCHYG00000007381 #12	SUZ12 (ENSCHYG00000006992) #13	CRLF3 (ENSCHYG00000006890) #14	ATAD5 (ENSCHYG00000006843) #15	TEFM (ENSCHYG00000006805) #16	RNF135 (ENSCHYG00000006620) #18	RHOT1 (ENSCHYG00000006284) #19	RHBDL3 (ENSCHYG00000006168) #20	C17orf75 (ENSCHYG00000006089) #21	ZNF207 (ENSCHYG00000005793) #22	PSMD11 (ENSCHYG00000005685) #23	CDK5R1 (ENSCHYG00000005666) #24	MYO1D (ENSCHYG00000005522) #25	TMEM98 (ENSCHYG00000005448) #26	SPACA3 (ENSCHYG00000005400) #27	ENSCHYG00000005385	ENSCHYG00000005365	ASIC2 (ENSCHYG00000005233) #28	CCL2 (ENSCHYG00000004987) #30	CCL11 (ENSCHYG00000004959) #31	ENSCHYG00000004663 #32	ENSCHYG00000004652 #33	TMEM132E (ENSCHYG00000004615) #34	CCT6B (ENSCHYG00000004528) #35	ZNF830 (ENSCHYG00000004488) #36
Cetacea	ANCESTRAL SPECIES	5	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Blue whale	MODERN SPECIES	12	OMG (ENSBMSG00010017364)	EVI2B (ENSBMSG00010017353)	EVI2A (ENSBMSG00010017340) #7	NF1 (ENSBMSG00010016830) #8	RAB11FIP4 (ENSBMSG00010016704) #9	COPRS (ENSBMSG00010016604) #11	UTP6 (ENSBMSG00010016566) #12	SUZ12 (ENSBMSG00010016507) #13	CRLF3 (ENSBMSG00010016451) #14	ATAD5 (ENSBMSG00010016293) #15	TEFM (ENSBMSG00010016257) #16	ADAP2 (ENSBMSG00010016222) #17	RHOT1 (ENSBMSG00010016141) #19	RHBDL3 (ENSBMSG00010016026) #20	C17orf75 (ENSBMSG00010015998) #21	ZNF207 (ENSBMSG00010015813) #22	PSMD11 (ENSBMSG00010015716) #23	CDK5R1 (ENSBMSG00010015699) #24	MYO1D (ENSBMSG00010015533) #25	TMEM98 (ENSBMSG00010015458) #26	SPACA3 (ENSBMSG00010015398) #27	ASIC2 (ENSBMSG00010015290) #28	CCL2 (ENSBMSG00010015239) #30	CCL7 (ENSBMSG00010015213) ##30	CCL11 (ENSBMSG00010015194) #31	CCL8 (ENSBMSG00010015171) #32	CCL1 (ENSBMSG00010015132) ##30	TMEM132E (ENSBMSG00010015019) #34	ENSBMSG00010014985	ZNF830 (ENSBMSG00010014976) #36	LIG3 (ENSBMSG00010014942) #37
Odontoceti	ANCESTRAL SPECIES	17	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Sperm whale	MODERN SPECIES	12	STOX1 (ENSPCTG00005006234)	CCAR1 (ENSPCTG00005005994)	TET1 (ENSPCTG00005005923)	DNA2 (ENSPCTG00005005526)	HNRNPH3 (ENSPCTG00005005402)	RUFY2 (ENSPCTG00005005150)	PBLD (ENSPCTG00005005019)	ATOH7 (ENSPCTG00005004994)	MYPN (ENSPCTG00005004741)	HERC4 (ENSPCTG00005004555)	SIRT1 (ENSPCTG00005004488)	DNAJC12 (ENSPCTG00005004448)	ENSPCTG00005004399	LRRTM3 (ENSPCTG00005021822)	CTNNA3 (ENSPCTG00005021800)	ENSPCTG00005021784 #22	ENSPCTG00005021773	ENSPCTG00005021765	ENSPCTG00005021759	REEP3 (ENSPCTG00005021737)	JMJD1C (ENSPCTG00005021543)	NRBF2 (ENSPCTG00005021512)	EGR2 (ENSPCTG00005021490)	ADO (ENSPCTG00005021478)	ZNF365 (ENSPCTG00005021453)	RTKN2 (ENSPCTG00005021419)	ARID5B (ENSPCTG00005021363)	CABCOCO1 (ENSPCTG00005021317)	TMEM26 (ENSPCTG00005021293)	RHOBTB1 (ENSPCTG00005021266)	CDK1 (ENSPCTG00005021227)
Odontoceti_a	ANCESTRAL SPECIES	18	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Dolphin	MODERN SPECIES	6504														RHBDL3 (ENSTTRG00000011323) #20	C17orf75 (ENSTTRG00000011316) #21	ZNF207 (ENSTTRG00000011300) #22
Odontoceti_b	ANCESTRAL SPECIES	20	ENSGT00550000074797.b #8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT01010000228931
Monodontidae	ANCESTRAL SPECIES	21	ENSGT00550000074797.b #8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT01010000228931	ENSGT00390000012151 #36
Narwhal	MODERN SPECIES	316	OMG (ENSMMNG00015020297)	EVI2B (ENSMMNG00015020306)	EVI2A (ENSMMNG00015020315) #7	RAB11FIP4 (ENSMMNG00015020333) #9	COPRS (ENSMMNG00015020405) #11	UTP6 (ENSMMNG00015020445) #12	SUZ12 (ENSMMNG00015020516) #13	CRLF3 (ENSMMNG00015020564) #14	ATAD5 (ENSMMNG00015020618) #15	ENSMMNG00015020651	TEFM (ENSMMNG00015020658) #16	ADAP2 (ENSMMNG00015020674) #17	RHOT1 (ENSMMNG00015020743) #19	RHBDL3 (ENSMMNG00015020871) #20	C17orf75 (ENSMMNG00015020915) #21	ZNF207 (ENSMMNG00015021000) #22	PSMD11 (ENSMMNG00015021150) #23	CDK5R1 (ENSMMNG00015021171) #24	MYO1D (ENSMMNG00015021191) #25	TMEM98 (ENSMMNG00015021221) #26	SPACA3 (ENSMMNG00015021243) #27	ASIC2 (ENSMMNG00015021265) #28	CCL2 (ENSMMNG00015021287) #30	ENSMMNG00015021298	CCL11 (ENSMMNG00015021303) #31	CCL8 (ENSMMNG00015021312) #32	ENSMMNG00015021318 ##30	CCL1 (ENSMMNG00015021332) ##30	TMEM132E (ENSMMNG00015021348) #34	ENSMMNG00015021366	ENSMMNG00015015650
Beluga whale	MODERN SPECIES	43	EVI2A (ENSDLEG00000005770) #7	NF1 (ENSDLEG00000004918) #8	RAB11FIP4 (ENSDLEG00000004705) #9	ENSDLEG00000004673 #11	UTP6 (ENSDLEG00000004635) #12	SUZ12 (ENSDLEG00000004558) #13	ENSDLEG00000004529	CRLF3 (ENSDLEG00000004508) #14	ENSDLEG00000004497	ATAD5 (ENSDLEG00000004353) #15	TEFM (ENSDLEG00000004305) #16	ADAP2 (ENSDLEG00000020513) #17	RHOT1 (ENSDLEG00000019806) #19	RHBDL3 (ENSDLEG00000019728) #20	C17orf75 (ENSDLEG00000019724) #21	ZNF207 (ENSDLEG00000019706) #22	PSMD11 (ENSDLEG00000019694) #23	CDK5R1 (ENSDLEG00000019689) #24	MYO1D (ENSDLEG00000019656) #25	TMEM98 (ENSDLEG00000019652) #26	SPACA3 (ENSDLEG00000019645) #27	ASIC2 (ENSDLEG00000019639) #28	ENSDLEG00000019633 #29	CCL2 (ENSDLEG00000019628) #30	CCL11 (ENSDLEG00000019618) #31	ENSDLEG00000019603 #32	ENSDLEG00000019587	ENSDLEG00000019583	SPEM2 (ENSDLEG00000019571)	ENSDLEG00000019561	ENSDLEG00000019553
Vaquita	DUPLICATION
Vaquita	MODERN SPECIES	7	CCAR1 (ENSPSNG00000018574)	ENSPSNG00000018517	TET1 (ENSPSNG00000018401)	DNA2 (ENSPSNG00000018291)	RUFY2 (ENSPSNG00000018016)	HNRNPH3 (ENSPSNG00000017903)	PBLD (ENSPSNG00000017813)	ATOH7 (ENSPSNG00000017790)	MYPN (ENSPSNG00000017208)	HERC4 (ENSPSNG00000016699)	SIRT1 (ENSPSNG00000016409)	ENSPSNG00000016344	DNAJC12 (ENSPSNG00000016132)	LRRTM3 (ENSPSNG00000016050)	CTNNA3 (ENSPSNG00000015816)	ENSPSNG00000015753 #22	ENSPSNG00000015687	REEP3 (ENSPSNG00000015636)	JMJD1C (ENSPSNG00000015259)	NRBF2 (ENSPSNG00000015149)	EGR2 (ENSPSNG00000015063)	ADO (ENSPSNG00000015035)	ZNF365 (ENSPSNG00000014971)	RTKN2 (ENSPSNG00000014902)	ARID5B (ENSPSNG00000014736)	CABCOCO1 (ENSPSNG00000014615)	TMEM26 (ENSPSNG00000014493)	RHOBTB1 (ENSPSNG00000014292)	CDK1 (ENSPSNG00000014155)	ENSPSNG00000014083	ANK3 (ENSPSNG00000012368)
Vaquita	MODERN SPECIES	12	EVI2B (ENSPSNG00000021314)	EVI2A (ENSPSNG00000021323) #7	RAB11FIP4 (ENSPSNG00000021351) #9	COPRS (ENSPSNG00000021477) #11	UTP6 (ENSPSNG00000021544) #12	SUZ12 (ENSPSNG00000021611) #13	CRLF3 (ENSPSNG00000021636) #14	ENSPSNG00000021650	ATAD5 (ENSPSNG00000021738) #15	ENSPSNG00000022012	TEFM (ENSPSNG00000022020) #16	ADAP2 (ENSPSNG00000022035) #17	RHOT1 (ENSPSNG00000022092) #19	RHBDL3 (ENSPSNG00000022156) #20	C17orf75 (ENSPSNG00000022179) #21	ZNF207 (ENSPSNG00000022235) #22	PSMD11 (ENSPSNG00000022276) #23	MYO1D (ENSPSNG00000022301) #25	TMEM98 (ENSPSNG00000022321) #26	SPACA3 (ENSPSNG00000022329) #27	ASIC2 (ENSPSNG00000022343) #28	CCL2 (ENSPSNG00000022350) #30	ENSPSNG00000022355	ENSPSNG00000022365 #32	ENSPSNG00000022368 ##30	ENSPSNG00000022370 #33	ENSPSNG00000009585	ENSPSNG00000009606	ENSPSNG00000009692	ENSPSNG00000009744	ENSPSNG00000009891
Camelidae	ANCESTRAL SPECIES	46	ENSGT00550000074797.b #8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	7	OMG (ENSCDRG00005016766)	EVI2B (ENSCDRG00005016784)	EVI2A (ENSCDRG00005016797) #7	ENSCDRG00005016822 #9	COPRS (ENSCDRG00005016899) #11	UTP6 (ENSCDRG00005016986) #12	SUZ12 (ENSCDRG00005017103) #13	CRLF3 (ENSCDRG00005017225) #14	ENSCDRG00005017338	ATAD5 (ENSCDRG00005017353) #15	TEFM (ENSCDRG00005017496) #16	ADAP2 (ENSCDRG00005017539) #17	RHOT1 (ENSCDRG00005017659) #19	RHBDL3 (ENSCDRG00005017971) #20	C17orf75 (ENSCDRG00005018024) #21	ENSCDRG00005018176 #22	PSMD11 (ENSCDRG00005018315) #23	CDK5R1 (ENSCDRG00005018360) #24	MYO1D (ENSCDRG00005018383) #25	TMEM98 (ENSCDRG00005018566) #26	ENSCDRG00005018607 #27	ENSCDRG00005018651 #27	ASIC2 (ENSCDRG00005018676) #28	CCL2 (ENSCDRG00005018730) #30	ENSCDRG00005018754 #31	CCL8 (ENSCDRG00005018771) #32	ENSCDRG00005018782 #33	TMEM132E (ENSCDRG00005018809) #34	CCT6B (ENSCDRG00005018987) #35	ZNF830 (ENSCDRG00005019235) #36	LIG3 (ENSCDRG00005019260) #37
Arabian camel	MODERN SPECIES	14	ENSCDRG00005014486	CLEC4G (ENSCDRG00005014424)	ENSCDRG00005014380	EVI5L (ENSCDRG00005014180)	PRR36 (ENSCDRG00005014132)	LRRC8E (ENSCDRG00005014110)	MAP2K7 (ENSCDRG00005013675)	TGFBR3L (ENSCDRG00005013598)	SNAPC2 (ENSCDRG00005013517)	CTXN1 (ENSCDRG00005013495)	TIMM44 (ENSCDRG00005013430)	ELAVL1 (ENSCDRG00005013355)	CCL25 (ENSCDRG00005013296)	FBN3 (ENSCDRG00005011636)	CERS4 (ENSCDRG00005011543)	ENSCDRG00005011484 #22	CD320 (ENSCDRG00005011455)	NDUFA7 (ENSCDRG00005011397)	RPS28 (ENSCDRG00005011369)	KANK3 (ENSCDRG00005011269)	ANGPTL4 (ENSCDRG00005011142)	RAB11B (ENSCDRG00005011000)	MARCHF2 (ENSCDRG00005010915)	HNRNPM (ENSCDRG00005010751)	PRAM1 (ENSCDRG00005010701)	ZNF414 (ENSCDRG00005010644)	MYO1F (ENSCDRG00005008914)	ADAMTS10 (ENSCDRG00005014083)	ACTL9 (ENSCDRG00005014023)	OR2Z1 (ENSCDRG00005013991)	ZNF558 (ENSCDRG00005013914)
Alpaca	MODERN SPECIES	254													RHOT1 (ENSVPAG00000002513) #19	ENSVPAG00000002517 #20	C17orf75 (ENSVPAG00000002519) #21	ZNF207 (ENSVPAG00000002521) #22	PSMD11 (ENSVPAG00000002523) #23	MYO1D (ENSVPAG00000002525) #25	TMEM98 (ENSVPAG00000002527) #26
Suina	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Chacoan peccary	MODERN SPECIES	144															C17orf75 (ENSCWAG00000013929) #21	ZNF207 (ENSCWAG00000013991) #22	PSMD11 (ENSCWAG00000014200) #23	CDK5R1 (ENSCWAG00000014253) #24	MYO1D (ENSCWAG00000014304) #25	TMEM98 (ENSCWAG00000014817) #26	SPACA3 (ENSCWAG00000014931) #27	ASIC2 (ENSCWAG00000015037) #28	CCL2 (ENSCWAG00000015205) #30	CCL11 (ENSCWAG00000015240) #31	CCL8 (ENSCWAG00000015268) #32	ENSCWAG00000015299 #33	TMEM132E (ENSCWAG00000015350) #34	CCT6B (ENSCWAG00000015565) #35	ZNF830 (ENSCWAG00000015919) #36	LIG3 (ENSCWAG00000015948) #37	RFFL (ENSCWAG00000016017)
Pig	MODERN SPECIES	3	EVI2B (ENSSSCG00000017750)	EVI2A (ENSSSCG00000017749) #7	NF1 (ENSSSCG00000017748) #8	RAB11FIP4 (ENSSSCG00000017747) #9	COPRS (ENSSSCG00000061452) #11	UTP6 (ENSSSCG00000017745) #12	SUZ12 (ENSSSCG00000017744) #13	CRLF3 (ENSSSCG00000017743) #14	ATAD5 (ENSSSCG00000035954) #15	TEFM (ENSSSCG00000017741) #16	ADAP2 (ENSSSCG00000017738) #17	RNF135 (ENSSSCG00000017737) #18	RHOT1 (ENSSSCG00000017735) #19	RHBDL3 (ENSSSCG00000017734) #20	C17orf75 (ENSSSCG00000017733) #21	ZNF207 (ENSSSCG00000017732) #22	PSMD11 (ENSSSCG00000017731) #23	CDK5R1 (ENSSSCG00000017730) #24	MYO1D (ENSSSCG00000017728) #25	TMEM98 (ENSSSCG00000017727) #26	SPACA3 (ENSSSCG00000017726) #27	ASIC2 (ENSSSCG00000040177) #28	ENSSSCG00000058804	ENSSSCG00000034396	ENSSSCG00000031620	CCL2 (ENSSSCG00000017723) #30	CCL11 (ENSSSCG00000044762) #31	CCL8 (ENSSSCG00000040648) #32	CCL1 (ENSSSCG00000017720) #33	TMEM132E (ENSSSCG00000022987) #34	CCT6B (ENSSSCG00000022196) #35
Laurasiatheria_b	ANCESTRAL SPECIES	4	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34
Laurasiatheria_c	ANCESTRAL SPECIES	3	ENSGT00550000074797.b #8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00390000003008	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a	ENSGT00940000159095	ENSGT00390000006458	ENSGT00940000157881
Equus	ANCESTRAL SPECIES		ENSGT00550000074797.b #8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Horse	MODERN SPECIES	2	KSR1 (ENSECAG00000019816)	WSB1 (ENSECAG00000016726)	EVI2B (ENSECAG00000004162)	EVI2A (ENSECAG00000004031) #7	NF1 (ENSECAG00000008317) #8	RAB11FIP4 (ENSECAG00000006337) #9	UTP6 (ENSECAG00000022217) #12	SUZ12 (ENSECAG00000019997) #13	CRLF3 (ENSECAG00000019822) #14	ATAD5 (ENSECAG00000018443) #15	TEFM (ENSECAG00000058199) #16	ADAP2 (ENSECAG00000015333) #17	RNF135 (ENSECAG00000014806) #18	RHOT1 (ENSECAG00000009478) #19	C11H17orf75 (ENSECAG00000001756) #21	ZNF207 (ENSECAG00000017464) #22	PSMD11 (ENSECAG00000014306) #23	CDK5R1 (ENSECAG00000004006) #24	MYO1D (ENSECAG00000009709) #25	TMEM98 (ENSECAG00000007610) #26	SPACA3 (ENSECAG00000005842) #27	ASIC2 (ENSECAG00000000922) #28	CCL8 (ENSECAG00000034282) ##30	ENSECAG00000036873 #33	TMEM132E (ENSECAG00000023816) #34	ZNF830 (ENSECAG00000003872) #36	CCT6B (ENSECAG00000021342) #35	LIG3 (ENSECAG00000016416) #37	RFFL (ENSECAG00000015502)	RAD51D (ENSECAG00000014139)	FNDC8 (ENSECAG00000014023)
Donkey	MODERN SPECIES	4	ENSEASG00005010856	EVI2B (ENSEASG00005030701)	EVI2A (ENSEASG00005010859) #7	RAB11FIP4 (ENSEASG00005010862) #9	UTP6 (ENSEASG00005010870) #12	ENSEASG00005010872 #13	ENSEASG00005010875 #14	ENSEASG00005010880 #15	TEFM (ENSEASG00005010887) #16	ADAP2 (ENSEASG00005010891) #17	ENSEASG00005029034	ENSEASG00005033664 #18	ENSEASG00005010897 #19	ENSEASG00005010901 #20	C17orf75 (ENSEASG00005010904) #21	ZNF207 (ENSEASG00005010907) #22	PSMD11 (ENSEASG00005010909) #23	CDK5R1 (ENSEASG00005010912) #24	MYO1D (ENSEASG00005010913) #25	TMEM98 (ENSEASG00005010917) #26	SPACA3 (ENSEASG00005010921) #27	ASIC2 (ENSEASG00005010930) #28	ENSEASG00005001865	ENSEASG00005035074	CCL2 (ENSEASG00005026206) #30	CCL7 (ENSEASG00005028946) ##30	CCL11 (ENSEASG00005029284) #31	CCL8 (ENSEASG00005028357) #32	ENSEASG00005033288 ##30	ENSEASG00005036948 #33	TMEM132E (ENSEASG00005010955) #34
Chiroptera	ANCESTRAL SPECIES	2	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a	ENSGT00940000159095	ENSGT00390000006458	ENSGT00940000157881
Megabat	MODERN SPECIES	3695																ZNF207 (ENSPVAG00000009766) #22	PSMD11 (ENSPVAG00000009767) #23
Microchiroptera	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a	ENSGT00940000159095	ENSGT00390000006458	ENSGT00940000157881
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1224											CA10 (ENSMLUG00000016229)	ENSMLUG00000028702	RHOT1 (ENSMLUG00000012605) #19	RHBDL3 (ENSMLUG00000007115) #20	C17orf75 (ENSMLUG00000007126) #21	ENSMLUG00000016085 #22	PSMD11 (ENSMLUG00000003874) #23	CDK5R1 (ENSMLUG00000025930) #24	MYO1D (ENSMLUG00000003887) #25	ENSMLUG00000001191 #26	SPACA3 (ENSMLUG00000001197) #27	ASIC2 (ENSMLUG00000001207) #28
Microbat	MODERN SPECIES	949								PDHA2 (ENSMLUG00000014449)	UNC5C (ENSMLUG00000009105)	BMPR1B (ENSMLUG00000009090)	PDLIM5 (ENSMLUG00000002083)	HPGDS (ENSMLUG00000000432)	SMARCAD1 (ENSMLUG00000000425)	ATOH1 (ENSMLUG00000008044)	GRID2 (ENSMLUG00000013810)	ENSMLUG00000029344 #22	ENSMLUG00000028227	ENSMLUG00000023642	CCSER1 (ENSMLUG00000013655)	MMRN1 (ENSMLUG00000000231)	SNCA (ENSMLUG00000008577)	ENSMLUG00000022411	FAM13A (ENSMLUG00000012281)	NAP1L5 (ENSMLUG00000012266)	HERC3 (ENSMLUG00000012241)	ENSMLUG00000030473	PYURF (ENSMLUG00000030624)	ENSMLUG00000023671	ENSMLUG00000012227	ENSMLUG00000027952	ENSMLUG00000026890
Greater horseshoe bat	MODERN SPECIES	13	RAB11FIP4 (ENSRFEG00010017596) #9	ENSRFEG00010017808	ENSRFEG00010017847	COPRS (ENSRFEG00010017903) #11	UTP6 (ENSRFEG00010017972) #12	SUZ12 (ENSRFEG00010018041) #13	CRLF3 (ENSRFEG00010018133) #14	ATAD5 (ENSRFEG00010018233) #15	TEFM (ENSRFEG00010018619) #16	ADAP2 (ENSRFEG00010018637) #17	RNF135 (ENSRFEG00010018686) #18	RHOT1 (ENSRFEG00010018815) #19	RHBDL3 (ENSRFEG00010019014) #20	C17orf75 (ENSRFEG00010019104) #21	ENSRFEG00010019127	ZNF207 (ENSRFEG00010019158) #22	ENSRFEG00010019307	PSMD11 (ENSRFEG00010019338) #23	CDK5R1 (ENSRFEG00010019423) #24	MYO1D (ENSRFEG00010019451) #25	ENSRFEG00010019534	TMEM98 (ENSRFEG00010019564) #26	SPACA3 (ENSRFEG00010019589) #27	ASIC2 (ENSRFEG00010019642) #28	ENSRFEG00010019773	CCL2 (ENSRFEG00010019809) #30	CCL8 (ENSRFEG00010019872) #32	TMEM132E (ENSRFEG00010019902) #34	CCT6B (ENSRFEG00010020082) #35	ZNF830 (ENSRFEG00010020329) #36	LIG3 (ENSRFEG00010020352) #37
Carnivora	ANCESTRAL SPECIES	9	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34
Felidae	ANCESTRAL SPECIES	8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479.i #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Cat	MODERN SPECIES	245	OMG (ENSFCAG00000008854)	EVI2B (ENSFCAG00000006064)	EVI2A (ENSFCAG00000043747) #7	RAB11FIP4 (ENSFCAG00000006068) #9	COPRS (ENSFCAG00000015794) #11	UTP6 (ENSFCAG00000015795) #12	SUZ12 (ENSFCAG00000023797) #13	CRLF3 (ENSFCAG00000025986) #14	ATAD5 (ENSFCAG00000006895) #15	TEFM (ENSFCAG00000022086) #16	ADAP2 (ENSFCAG00000012459) #17	ENSFCAG00000009132 #18	RHOT1 (ENSFCAG00000015378) #19	RHBDL3 (ENSFCAG00000015381) #20	CE1H17orf75 (ENSFCAG00000025653) #21	ZNF207 (ENSFCAG00000015387) #22	ENSFCAG00000028860	PSMD11 (ENSFCAG00000002060) #23	CDK5R1 (ENSFCAG00000008545) #24	MYO1D (ENSFCAG00000012420) #25	TMEM98 (ENSFCAG00000000912) #26	SPACA3 (ENSFCAG00000000913) #27	ASIC2 (ENSFCAG00000018329) #28	CCL2 (ENSFCAG00000038488) #30	CCL7 (ENSFCAG00000045217) ##30	CCL8 (ENSFCAG00000013594) #32	CCL13 (ENSFCAG00000026454) ##30	ENSFCAG00000032743 #33	TMEM132E (ENSFCAG00000022991) #34	CCT6B (ENSFCAG00000022789) #35	LIG3 (ENSFCAG00000000249) #37
Panthera	ANCESTRAL SPECIES	14	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01060000248892	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01040000242096	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479.i #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Tiger	MODERN SPECIES	76	EVI2B (ENSPTIG00000002057)	EVI2A (ENSPTIG00000021682) #7	NF1 (ENSPTIG00000019194) #8	RAB11FIP4 (ENSPTIG00000016907) #9	COPRS (ENSPTIG00000016317) #11	UTP6 (ENSPTIG00000013913) #12	SUZ12 (ENSPTIG00000010329) #13	CRLF3 (ENSPTIG00000009626) #14	ATAD5 (ENSPTIG00000006424) #15	TEFM (ENSPTIG00000004505) #16	ADAP2 (ENSPTIG00000021798) #17	ENSPTIG00000021371 #18	RHOT1 (ENSPTIG00000010535) #19	RHBDL3 (ENSPTIG00000006273) #20	C17orf75 (ENSPTIG00000001419) #21	ZNF207 (ENSPTIG00000016631) #22	PSMD11 (ENSPTIG00000014305) #23	CDK5R1 (ENSPTIG00000000341) #24	MYO1D (ENSPTIG00000007889) #25	TMEM98 (ENSPTIG00000004532) #26	SPACA3 (ENSPTIG00000000021) #27	ASIC2 (ENSPTIG00000021857) #28
Panthera_a	ANCESTRAL SPECIES	13	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01060000248892	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01040000242096	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479.i #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
leopard	MODERN SPECIES	96	EVI2B (ENSPPRG00000018243)	EVI2A (ENSPPRG00000003824) #7	RAB11FIP4 (ENSPPRG00000003276) #9	COPRS (ENSPPRG00000001459) #11	UTP6 (ENSPPRG00000001010) #12	SUZ12 (ENSPPRG00000021306) #13	CRLF3 (ENSPPRG00000020201) #14	ATAD5 (ENSPPRG00000018417) #15	TEFM (ENSPPRG00000015099) #16	ADAP2 (ENSPPRG00000014777) #17	ENSPPRG00000011923	RNF135 (ENSPPRG00000011481) #18	RHOT1 (ENSPPRG00000010338) #19	RHBDL3 (ENSPPRG00000006776) #20	C17orf75 (ENSPPRG00000002407) #21	ZNF207 (ENSPPRG00000001689) #22	PSMD11 (ENSPPRG00000023389) #23	CDK5R1 (ENSPPRG00000017589) #24	MYO1D (ENSPPRG00000024181) #25	TMEM98 (ENSPPRG00000014217) #26	SPACA3 (ENSPPRG00000013306) #27	ASIC2 (ENSPPRG00000011981) #28	ENSPPRG00000009983	ENSPPRG00000009828	CCL8 (ENSPPRG00000009741) #32	CCL13 (ENSPPRG00000009433) ##30	ENSPPRG00000008979 #33	TMEM132E (ENSPPRG00000008656) #34	CCT6B (ENSPPRG00000007926) #35	ZNF830 (ENSPPRG00000017044) #36	LIG3 (ENSPPRG00000005157) #37
lion	MODERN SPECIES	14	OMG (ENSPLOG00000013157)	EVI2B (ENSPLOG00000013180)	EVI2A (ENSPLOG00000013199) #7	RAB11FIP4 (ENSPLOG00000013242) #9	COPRS (ENSPLOG00000013486) #11	UTP6 (ENSPLOG00000013575) #12	SUZ12 (ENSPLOG00000013650) #13	CRLF3 (ENSPLOG00000013965) #14	ATAD5 (ENSPLOG00000014072) #15	TEFM (ENSPLOG00000014129) #16	ADAP2 (ENSPLOG00000014207) #17	ENSPLOG00000014267 #18	RHOT1 (ENSPLOG00000014449) #19	RHBDL3 (ENSPLOG00000014660) #20	C17orf75 (ENSPLOG00000014757) #21	ZNF207 (ENSPLOG00000014967) #22	ENSPLOG00000015470	PSMD11 (ENSPLOG00000015536) #23	CDK5R1 (ENSPLOG00000015588) #24	MYO1D (ENSPLOG00000015637) #25	TMEM98 (ENSPLOG00000015789) #26	SPACA3 (ENSPLOG00000015896) #27	ASIC2 (ENSPLOG00000015956) #28	ENSPLOG00000016136	CCL2 (ENSPLOG00000016154) #30	ENSPLOG00000016184	CCL8 (ENSPLOG00000008313) #32	CCL13 (ENSPLOG00000008357) ##30	ENSPLOG00000008391 #33	TMEM132E (ENSPLOG00000008445) #34	CCT6B (ENSPLOG00000008659) #35
Caniformia	ANCESTRAL SPECIES	6	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Caniformia_b	ANCESTRAL SPECIES	21	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Mustelinae	ANCESTRAL SPECIES	2	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Ferret	MODERN SPECIES	181	EVI2B (ENSMPUG00000019512)	RAB11FIP4 (ENSMPUG00000014571) #9	ENSMPUG00000014576	COPRS (ENSMPUG00000014579) #11	UTP6 (ENSMPUG00000014581) #12	ENSMPUG00000014639	SUZ12 (ENSMPUG00000014641) #13	CRLF3 (ENSMPUG00000014670) #14	ATAD5 (ENSMPUG00000014687) #15	TEFM (ENSMPUG00000014690) #16	ADAP2 (ENSMPUG00000014694) #17	RNF135 (ENSMPUG00000014696) #18	RHOT1 (ENSMPUG00000014703) #19	RHBDL3 (ENSMPUG00000014711) #20	C17orf75 (ENSMPUG00000014757) #21	ZNF207 (ENSMPUG00000014761) #22	PSMD11 (ENSMPUG00000014767) #23	CDK5R1 (ENSMPUG00000019514) #24	MYO1D (ENSMPUG00000014772) #25	ENSMPUG00000014779	TMEM98 (ENSMPUG00000014780) #26	SPACA3 (ENSMPUG00000014796) #27	ASIC2 (ENSMPUG00000014834) #28	ENSMPUG00000014838	ENSMPUG00000014840	CCL2 (ENSMPUG00000014841) #30	CCL7 (ENSMPUG00000014843) ##30	CCL8 (ENSMPUG00000014845) #32	CCL13 (ENSMPUG00000014846) ##30	ENSMPUG00000014849 #33	TMEM132E (ENSMPUG00000014852) #34
American mink	MODERN SPECIES	37	OMG (ENSNVIG00000018705)	EVI2B (ENSNVIG00000018709)	EVI2A (ENSNVIG00000018714) #7	ENSNVIG00000018723 #9	COPRS (ENSNVIG00000018741) #11	UTP6 (ENSNVIG00000018745) #12	SUZ12 (ENSNVIG00000018784) #13	CRLF3 (ENSNVIG00000018811) #14	ATAD5 (ENSNVIG00000018837) #15	ENSNVIG00000018890 #16	ADAP2 (ENSNVIG00000018896) #17	ENSNVIG00000018939 #18	RHOT1 (ENSNVIG00000018960) #19	RHBDL3 (ENSNVIG00000019290) #20	NJMU (ENSNVIG00000019347) #21	ZNF207 (ENSNVIG00000019388) #22	PSMD11 (ENSNVIG00000019522) #23	CD5R1 (ENSNVIG00000019539) #24	MYO1D (ENSNVIG00000019549) #25	TMM98 (ENSNVIG00000019571) #26	SPACA3 (ENSNVIG00000019598) #27	ASIC2 (ENSNVIG00000019610) #28	CCL2 (ENSNVIG00000019643) #30	ENSNVIG00000019653	CCL8 (ENSNVIG00000019665) #32	CCL13 (ENSNVIG00000019676) ##30	CCL1 (ENSNVIG00000019684) ##30	TMEM132E (ENSNVIG00000019694) #34	CCT6B (ENSNVIG00000019712) #35	ZNF830 (ENSNVIG00000019817) #36	LIG3 (ENSNVIG00000019831) #37
Ursidae	ANCESTRAL SPECIES	18	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Ursus	ANCESTRAL SPECIES	8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00940000153112.E.f.b.c.b	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000156339 #35	ENSGT00390000012151 #36
American black bear	MODERN SPECIES	135														RHBDL3 (ENSUAMG00000002279) #20	C17orf75 (ENSUAMG00000002234) #21	ZNF207 (ENSUAMG00000002209) #22
Polar bear	MODERN SPECIES	192	OMG (ENSUMAG00000015106)	EVI2B (ENSUMAG00000015108)	EVI2A (ENSUMAG00000015109) #7	RAB11FIP4 (ENSUMAG00000015115) #9	COPRS (ENSUMAG00000015132) #11	UTP6 (ENSUMAG00000015139) #12	SUZ12 (ENSUMAG00000015161) #13	CRLF3 (ENSUMAG00000015224) #14	ATAD5 (ENSUMAG00000015244) #15	TEFM (ENSUMAG00000015276) #16	ADAP2 (ENSUMAG00000015291) #17	ENSUMAG00000015298 #18	RHOT1 (ENSUMAG00000015308) #19	RHBDL3 (ENSUMAG00000015318) #20	C17orf75 (ENSUMAG00000015332) #21	ZNF207 (ENSUMAG00000015371) #22	PSMD11 (ENSUMAG00000015400) #23	CDK5R1 (ENSUMAG00000015534) #24	MYO1D (ENSUMAG00000015550) #25	ENSUMAG00000015571	TMEM98 (ENSUMAG00000015573) #26	ENSUMAG00000015581 #27	ASIC2 (ENSUMAG00000015591) #28	ENSUMAG00000015601 #29	CCL2 (ENSUMAG00000015604) #30	CCL7 (ENSUMAG00000015608) ##30	CCL8 (ENSUMAG00000015612) #32	CCL13 (ENSUMAG00000015615) ##30	ENSUMAG00000015623 #33	CCT6B (ENSUMAG00000015641) #35	ZNF830 (ENSUMAG00000015731) #36
Giant Panda	MODERN SPECIES	4	ENSAMEG00000005313 #8	ENSAMEG00000019807	EVI2B (ENSAMEG00000019814)	EVI2A (ENSAMEG00000005406) #7	RAB11FIP4 (ENSAMEG00000005409) #9	COPRS (ENSAMEG00000005439) #11	UTP6 (ENSAMEG00000005443) #12	ENSAMEG00000005490 #13	ENSAMEG00000005514 #14	ENSAMEG00000005534 #15	TEFM (ENSAMEG00000005559) #16	ENSAMEG00000005566 #17	ENSAMEG00000005578 #19	ENSAMEG00000005643 #20	C17orf75 (ENSAMEG00000005662) #21	ZNF207 (ENSAMEG00000005671) #22	PSMD11 (ENSAMEG00000005693) #23	CDK5R1 (ENSAMEG00000019817) #24	MYO1D (ENSAMEG00000005735) #25	TMEM98 (ENSAMEG00000026035) #26	SPACA3 (ENSAMEG00000005761) #27	ASIC2 (ENSAMEG00000005774) #28	ENSAMEG00000025929 #30	CCL7 (ENSAMEG00000028962) ##30	CCL8 (ENSAMEG00000029965) #32	CCL13 (ENSAMEG00000023685) ##30	CCL1 (ENSAMEG00000005795) ##30	TMEM132E (ENSAMEG00000014409) #34	CCT6B (ENSAMEG00000014473) #35	ZNF830 (ENSAMEG00000019495) #36	LIG3 (ENSAMEG00000014509) #37
Canidae	ANCESTRAL SPECIES	2	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449.a #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Red fox	MODERN SPECIES	20	DKC1 (ENSVVUG00000020734)	MPP1 (ENSVVUG00000020728)	F8 (ENSVVUG00000020717)	FUNDC2 (ENSVVUG00000020713)	CMC4 (ENSVVUG00000020710)	MTCP1 (ENSVVUG00000020711)	ENSVVUG00000020709	ENSVVUG00000020707	ENSVVUG00000020703	ADAP2 (ENSVVUG00000020701) #17	RNF135 (ENSVVUG00000020698) #18	ENSVVUG00000020695	RHOT1 (ENSVVUG00000020640) #19	RHBDL3 (ENSVVUG00000020629) #20	CUNH17orf75 (ENSVVUG00000020625) #21	ZNF207 (ENSVVUG00000020618) #22	PSMD11 (ENSVVUG00000020613) #23	CDK5R1 (ENSVVUG00000020611) #24	MYO1D (ENSVVUG00000020589) #25	TMEM98 (ENSVVUG00000020587) #26	SPACA3 (ENSVVUG00000020586) #27	ASIC2 (ENSVVUG00000020562) #28	ENSVVUG00000020545 #29	CCL2 (ENSVVUG00000020543) #30	CCL8 (ENSVVUG00000020542) #32	ENSVVUG00000020541 ##30	CCL1 (ENSVVUG00000020540) ##30	TMEM132E (ENSVVUG00000020524) #34	CCT6B (ENSVVUG00000020499) #35	ZNF830 (ENSVVUG00000020495) #36	LIG3 (ENSVVUG00000020483) #37
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449.a #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Dingo	DUPLICATION
Dingo	MODERN SPECIES	150														ENSCAFG00020014255 #21	ENSCAFG00020014254 #21	ENSCAFG00020014249 #22	PSMD11 (ENSCAFG00020014246) #23	CDK5R1 (ENSCAFG00020014244) #24	MYO1D (ENSCAFG00020014232) #25	TMEM98 (ENSCAFG00020014224) #26	ENSCAFG00020014220 #27	ASIC2 (ENSCAFG00020014212) #28	ENSCAFG00020014208	ENSCAFG00020014206 #30	CCL7 (ENSCAFG00020014205) ##30	CCL8 (ENSCAFG00020014202) #32	CCL13 (ENSCAFG00020014200) ##30	ENSCAFG00020014197 ##30	TMEM132E (ENSCAFG00020014170) #34	ENSCAFG00020014164	ENSCAFG00020014162
Dingo	MODERN SPECIES	327	ENSCAFG00020014662	RAB11FIP4 (ENSCAFG00020014665) #9	ENSCAFG00020014676	UTP6 (ENSCAFG00020014678) #12	SUZ12 (ENSCAFG00020014688) #13	CRLF3 (ENSCAFG00020014745) #14	ATAD5 (ENSCAFG00020014749) #15	TEFM (ENSCAFG00020014756) #16	ADAP2 (ENSCAFG00020014760) #17	ENSCAFG00020014771 #18	ENSCAFG00020014772 #18	RHOT1 (ENSCAFG00020014790) #19	RHBDL3 (ENSCAFG00020016379) #20	ENSCAFG00020016390 #21	ENSCAFG00020016393 #21	ENSCAFG00020016397 #22
Dog	DUPLICATION
Dog	MODERN SPECIES	37	EVI2A (ENSCAFG00845014271) #7	ENSCAFG00845014199 #8	RAB11FIP4 (ENSCAFG00845014090) #9	COPRS (ENSCAFG00845014015) #11	UTP6 (ENSCAFG00845013931) #12	SUZ12 (ENSCAFG00845013827) #13	ENSCAFG00845013766 #14	ATAD5 (ENSCAFG00845013608) #15	TEFM (ENSCAFG00845013524) #16	ADAP2 (ENSCAFG00845013471) #17	RNF135 (ENSCAFG00845013351) #18	ENSCAFG00845013335	RHOT1 (ENSCAFG00845012939) #19	RHBDL3 (ENSCAFG00845012661) #20	C17orf75 (ENSCAFG00845012586) #21	ZNF207 (ENSCAFG00845012267) #22	PSMD11 (ENSCAFG00845012106) #23	CDK5R1 (ENSCAFG00845012076) #24	MYO1D (ENSCAFG00845011784) #25	TMEM98 (ENSCAFG00845011666) #26	SPACA3 (ENSCAFG00845011594) #27	ASIC2 (ENSCAFG00845011475) #28	CCL2 (ENSCAFG00845011375) #30	CCL8 (ENSCAFG00845011338) #32	CCL1 (ENSCAFG00845011240) #33	CCL13 (ENSCAFG00845011162) ##30	TMEM132E (ENSCAFG00845011068) #34	ENSCAFG00845011012	CCT6B (ENSCAFG00845010909) #35	ZNF830 (ENSCAFG00845010855) #36	LIG3 (ENSCAFG00845010737) #37
Dog	MODERN SPECIES	2	BTNL9 (ENSCAFG00845005351)	OR2T26 (ENSCAFG00845005372)	ENSCAFG00845005382	TRIM7 (ENSCAFG00845005395)	TRIM41 (ENSCAFG00845005431)	RACK1 (ENSCAFG00845005488)	ENSCAFG00845005544	ENSCAFG00845005562	ENSCAFG00845005580	ENSCAFG00845005606	ENSCAFG00845005621	IFGGC1 (ENSCAFG00845005668)	ENSCAFG00845005718	IFGGB2 (ENSCAFG00845005769)	ENSCAFG00845005800	ENSCAFG00845005821 #22	ENSCAFG00845005841	ENSCAFG00845006015	CNOT6 (ENSCAFG00845006394)	ENSCAFG00845006420	GFPT2 (ENSCAFG00845006488)	MAPK9 (ENSCAFG00845006710)	RASGEF1C (ENSCAFG00845006880)	RNF130 (ENSCAFG00845007023)	TBC1D9B (ENSCAFG00845007248)	ENSCAFG00845007488	SQSTM1 (ENSCAFG00845007599)	MGAT4B (ENSCAFG00845007711)	LTC4S (ENSCAFG00845007863)	MAML1 (ENSCAFG00845007951)	CANX (ENSCAFG00845008030)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00730000111057 #22
Common shrew	MODERN SPECIES	135																ZNF207 (ENSSARG00000003126) #22
Hedgehog	MODERN SPECIES	12374																ZNF207 (ENSEEUG00000001574) #22
Euarchontoglires	ANCESTRAL SPECIES	4	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01060000248892	ENSGT01100000263482.A.a.a.d.a.a.b #31
Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Tree shrew	MODERN SPECIES	3852													RHOT1 (ENSTBEG00000004348) #19	RHBDL3 (ENSTBEG00000005029) #20	C17orf75 (ENSTBEG00000005744) #21	ENSTBEG00000007127 #22
Glires	ANCESTRAL SPECIES	3	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Rabbit	MODERN SPECIES	10	OMG (ENSOCUG00000008593)	EVI2B (ENSOCUG00000008595)	EVI2A (ENSOCUG00000008603) #7	RAB11FIP4 (ENSOCUG00000007443) #9	COPRS (ENSOCUG00000015488) #11	UTP6 (ENSOCUG00000016980) #12	SUZ12 (ENSOCUG00000002536) #13	CRLF3 (ENSOCUG00000002764) #14	ATAD5 (ENSOCUG00000015229) #15	TEFM (ENSOCUG00000015262) #16	ADAP2 (ENSOCUG00000015269) #17	ENSOCUG00000008741 #18	RHOT1 (ENSOCUG00000012506) #19	RHBDL3 (ENSOCUG00000008179) #20	C17orf75 (ENSOCUG00000008187) #21	ZNF207 (ENSOCUG00000008195) #22	PSMD11 (ENSOCUG00000008495) #23	MYO1D (ENSOCUG00000008513) #25	TMEM98 (ENSOCUG00000009595) #26	SPACA3 (ENSOCUG00000010792) #27	ASIC2 (ENSOCUG00000013626) #28	ENSOCUG00000025296	CCL2 (ENSOCUG00000021710) #30	ENSOCUG00000034927 ##30	CCL11 (ENSOCUG00000005935) #31	ENSOCUG00000030195	ENSOCUG00000013412 ##30	ENSOCUG00000013416 #33	TMEM132E (ENSOCUG00000012159) #34	CCT6B (ENSOCUG00000012343) #35	ZNF830 (ENSOCUG00000012351) #36
Pika	MODERN SPECIES	4736												ENSOPRG00000014844 #18	RHOT1 (ENSOPRG00000014856) #19	RHBDL3 (ENSOPRG00000014911) #20	C17orf75 (ENSOPRG00000014924) #21	ENSOPRG00000014950 #22
Rodentia	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b.d #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01100000263482.F ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b.d #31	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Muroidea	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b.d #31	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00550000074797.b #8	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Northern American deer mouse	MODERN SPECIES	21	Omg (ENSPEMG00000012789)	Evi2b (ENSPEMG00000011425)	Evi2a (ENSPEMG00000009997) #7	Rab11fip4 (ENSPEMG00000017840) #9	Utp6 (ENSPEMG00000014081) #12	Suz12 (ENSPEMG00000019235) #13	Crlf3 (ENSPEMG00000018811) #14	Atad5 (ENSPEMG00000012850) #15	Tefm (ENSPEMG00000016212) #16	Adap2 (ENSPEMG00000002187) #17	ENSPEMG00000018511 #18	Rhot1 (ENSPEMG00000015998) #19	Rhbdl3 (ENSPEMG00000017609) #20	5730455P16Rik (ENSPEMG00000007661) #21	ENSPEMG00000031231	Zfp207 (ENSPEMG00000009110) #22	Psmd11 (ENSPEMG00000015029) #23	Cdk5r1 (ENSPEMG00000004672) #24	Myo1d (ENSPEMG00000021437) #25	Tmem98 (ENSPEMG00000015639) #26	Spaca3 (ENSPEMG00000008847) #27	Asic2 (ENSPEMG00000022612) #28	ENSPEMG00000021078	Ccl2 (ENSPEMG00000024087) #30	Ccl7 (ENSPEMG00000022329) ##30	Ccl11 (ENSPEMG00000031393) ##30	Ccl12 (ENSPEMG00000018710) ##30	Ccl8 (ENSPEMG00000024303) ##30	ENSPEMG00000022558 #33	Tmem132e (ENSPEMG00000016046) #34	Cct6b (ENSPEMG00000022000) #35
Prairie vole	MODERN SPECIES	15	Omg (ENSMOCG00000008768)	Evi2b (ENSMOCG00000017970)	Evi2a (ENSMOCG00000003867) #7	Nf1 (ENSMOCG00000013672) #8	Rab11fip4 (ENSMOCG00000016866) #9	Utp6 (ENSMOCG00000014163) #12	Suz12 (ENSMOCG00000019023) #13	Crlf3 (ENSMOCG00000012869) #14	Atad5 (ENSMOCG00000003812) #15	Tefm (ENSMOCG00000000789) #16	Adap2 (ENSMOCG00000012833) #17	ENSMOCG00000008236 #18	Rhot1 (ENSMOCG00000018397) #19	Rhbdl3 (ENSMOCG00000018973) #20	5730455P16Rik (ENSMOCG00000020781) #21	Zfp207 (ENSMOCG00000017262) #22	ENSMOCG00000010820 #23	ENSMOCG00000012529 #23	Cdk5r1 (ENSMOCG00000001690) #24	Myo1d (ENSMOCG00000018702) #25	Tmem98 (ENSMOCG00000019650) #26	Spaca3 (ENSMOCG00000019356) #27	Asic2 (ENSMOCG00000011922) #28	Ccl2 (ENSMOCG00000017496) #30	Ccl7 (ENSMOCG00000014487) ##30	Ccl11 (ENSMOCG00000003156) ##30	Ccl12 (ENSMOCG00000009094) ##30	Ccl8 (ENSMOCG00000006845) ##30	Ccl1 (ENSMOCG00000005819) #33	Tmem132e (ENSMOCG00000017883) #34	Cct6b (ENSMOCG00000015382) #35
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Chinese hamster chok1gshd	MODERN SPECIES	374	Omg (ENSCGRG00001003552)	Evi2b (ENSCGRG00001002438)	Evi2a (ENSCGRG00001001421) #7	Nf1 (ENSCGRG00001015811) #8	Rab11fip4 (ENSCGRG00001011772) #9	Utp6 (ENSCGRG00001000046) #12	Suz12 (ENSCGRG00001012460) #13	ENSCGRG00001008689 #14	Atad5 (ENSCGRG00001015531) #15	Tefm (ENSCGRG00001014415) #16	Adap2 (ENSCGRG00001013794) #17	ENSCGRG00001013219 #18	Rhot1 (ENSCGRG00001018128) #19	Rhbdl3 (ENSCGRG00001011616) #20	5730455P16Rik (ENSCGRG00001011069) #21	Zfp207 (ENSCGRG00001018133) #22	Psmd11 (ENSCGRG00001014740) #23	Cdk5r1 (ENSCGRG00001014057) #24	Myo1d (ENSCGRG00001020403) #25
Golden Hamster	MODERN SPECIES	684	Omg (ENSMAUG00000000920)	Evi2b (ENSMAUG00000021786)	Evi2a (ENSMAUG00000011179) #7	Nf1 (ENSMAUG00000021534) #8	Rab11fip4 (ENSMAUG00000012204) #9	Utp6 (ENSMAUG00000021895) #12	Suz12 (ENSMAUG00000001677) #13	Crlf3 (ENSMAUG00000001238) #14	Atad5 (ENSMAUG00000019548) #15	Tefm (ENSMAUG00000006565) #16	Adap2 (ENSMAUG00000001797) #17	ENSMAUG00000022173 #18	Rhot1 (ENSMAUG00000021776) #19	Rhbdl3 (ENSMAUG00000020013) #20	5730455P16Rik (ENSMAUG00000007002) #21	Zfp207 (ENSMAUG00000008892) #22	Psmd11 (ENSMAUG00000019073) #23	Cdk5r1 (ENSMAUG00000021140) #24	ENSMAUG00000009545	Myo1d (ENSMAUG00000013009) #25	Tmem98 (ENSMAUG00000012837) #26	Spaca3 (ENSMAUG00000018445) #27	Asic2 (ENSMAUG00000010967) #28	Ccl2 (ENSMAUG00000020623) #30	ENSMAUG00000012536	Ccl7 (ENSMAUG00000011314) ##30	Ccl11 (ENSMAUG00000015725) ##30	Ccl12 (ENSMAUG00000013327) ##30	Ccl8 (ENSMAUG00000018176) ##30	ENSMAUG00000013646 ##30	Tmem132e (ENSMAUG00000016009) #34
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Mus	ANCESTRAL SPECIES	2	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.q #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.q #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00550000074797.b #8	ENSGT00440000033742.a.b #9	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00940000164538	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.q #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00900000143320	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.c.b ##30	ENSGT01100000263482.A.a.a.d.a.a.a.a.a ##30	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
spretus	MODERN SPECIES	2	Omg (MGP_SPRETEiJ_G0017667)	MGP_SPRETEiJ_G0017668	MGP_SPRETEiJ_G0017669	Evi2a (MGP_SPRETEiJ_G0017670) #7	Rab11fip4 (MGP_SPRETEiJ_G0017671) #9	Utp6 (MGP_SPRETEiJ_G0017672) #12	Suz12 (MGP_SPRETEiJ_G0017673) #13	Crlf3 (MGP_SPRETEiJ_G0017674) #14	Atad5 (MGP_SPRETEiJ_G0017675) #15	Tefm (MGP_SPRETEiJ_G0017676) #16	Adap2 (MGP_SPRETEiJ_G0017677) #17	Rnf135 (MGP_SPRETEiJ_G0017678)	Rhot1 (MGP_SPRETEiJ_G0017679) #19	Rhbdl3 (MGP_SPRETEiJ_G0017680) #20	5730455P16Rik (MGP_SPRETEiJ_G0017681) #21	Zfp207 (MGP_SPRETEiJ_G0017682) #22	Psmd11 (MGP_SPRETEiJ_G0017683) #23	Cdk5r1 (MGP_SPRETEiJ_G0017684) #24	Myo1d (MGP_SPRETEiJ_G0017685) #25	Tmem98 (MGP_SPRETEiJ_G0017686) #26	Spaca3 (MGP_SPRETEiJ_G0017687) #27	Asic2 (MGP_SPRETEiJ_G0017688) #28	MGP_SPRETEiJ_G0017689	MGP_SPRETEiJ_G0017690	Ccl2 (MGP_SPRETEiJ_G0017691) #30	Ccl7 (MGP_SPRETEiJ_G0017692) ##30	Ccl11 (MGP_SPRETEiJ_G0017693) ##30	Ccl12 (MGP_SPRETEiJ_G0017694) ##30	Ccl8 (MGP_SPRETEiJ_G0017695) ##30	Ccl1 (MGP_SPRETEiJ_G0017696) #33	Tmem132e (MGP_SPRETEiJ_G0017697) #34
Steppe mouse	MODERN SPECIES	3351	Evi2b (ENSMSIG00000009267)	Evi2a (ENSMSIG00000009262) #7	Nf1 (ENSMSIG00000008704) #8	Rab11fip4 (ENSMSIG00000008628) #9	ENSMSIG00000008597	Utp6 (ENSMSIG00000008510) #12	Suz12 (ENSMSIG00000008361) #13	Crlf3 (ENSMSIG00000008282) #14	Atad5 (ENSMSIG00000008129) #15	Tefm (ENSMSIG00000008088) #16	Adap2 (ENSMSIG00000008061) #17	Rnf135 (ENSMSIG00000008044)	Rhot1 (ENSMSIG00000007800) #19	Rhbdl3 (ENSMSIG00000007754) #20	5730455P16Rik (ENSMSIG00000007744) #21	Zfp207 (ENSMSIG00000007459) #22	Psmd11 (ENSMSIG00000007357) #23	Cdk5r1 (ENSMSIG00000007341) #24	ENSMSIG00000007320	Myo1d (ENSMSIG00000007194) #25	Tmem98 (ENSMSIG00000007161) #26	Spaca3 (ENSMSIG00000007147) #27	ENSMSIG00000007120	Asic2 (ENSMSIG00000007029) #28	Ccl2 (ENSMSIG00000007015) #30	ENSMSIG00000006998	Ccl7 (ENSMSIG00000006992) ##30	Ccl11 (ENSMSIG00000006983) ##30	Ccl12 (ENSMSIG00000006962) ##30	Ccl8 (ENSMSIG00000006943) ##30	Ccl1 (ENSMSIG00000006904) #33
Mouse	MODERN SPECIES	2	Nf1 (ENSMUSG00000020716) #8	Omg (ENSMUSG00000049612)	Evi2b (ENSMUSG00000093938)	Evi2a (ENSMUSG00000078771) #7	Rab11fip4 (ENSMUSG00000017639) #9	Utp6 (ENSMUSG00000035575) #12	Suz12 (ENSMUSG00000017548) #13	Crlf3 (ENSMUSG00000017561) #14	Atad5 (ENSMUSG00000017550) #15	Tefm (ENSMUSG00000046909) #16	Adap2 (ENSMUSG00000020709) #17	Rnf135 (ENSMUSG00000020707)	Rhot1 (ENSMUSG00000017686) #19	Rhbdl3 (ENSMUSG00000017692) #20	5730455P16Rik (ENSMUSG00000057181) #21	Zfp207 (ENSMUSG00000017421) #22	Psmd11 (ENSMUSG00000017428) #23	Cdk5r1 (ENSMUSG00000048895) #24	Myo1d (ENSMUSG00000035441) #25	Tmem98 (ENSMUSG00000035413) #26	Spaca3 (ENSMUSG00000053184) #27	Asic2 (ENSMUSG00000020704) #28	Ccl2 (ENSMUSG00000035385) #30	Ccl7 (ENSMUSG00000035373) ##30	Ccl11 (ENSMUSG00000020676) ##30	Ccl12 (ENSMUSG00000035352) ##30	Ccl8 (ENSMUSG00000009185) ##30	Ccl1 (ENSMUSG00000020702) #33	Tmem132e (ENSMUSG00000020701) #34	Cct6b (ENSMUSG00000020698) #35	Zfp830 (ENSMUSG00000046010) #36
Ryukyu mouse	MODERN SPECIES	2	Omg (MGP_CAROLIEiJ_G0016823)	MGP_CAROLIEiJ_G0016824	MGP_CAROLIEiJ_G0016825	Evi2a (MGP_CAROLIEiJ_G0016826) #7	Rab11fip4 (MGP_CAROLIEiJ_G0016827) #9	Utp6 (MGP_CAROLIEiJ_G0016828) #12	Suz12 (MGP_CAROLIEiJ_G0016829) #13	Crlf3 (MGP_CAROLIEiJ_G0016830) #14	Atad5 (MGP_CAROLIEiJ_G0016831) #15	Tefm (MGP_CAROLIEiJ_G0016832) #16	Adap2 (MGP_CAROLIEiJ_G0016833) #17	Rnf135 (MGP_CAROLIEiJ_G0016834)	Rhot1 (MGP_CAROLIEiJ_G0016835) #19	Rhbdl3 (MGP_CAROLIEiJ_G0016836) #20	5730455P16Rik (MGP_CAROLIEiJ_G0016837) #21	Zfp207 (MGP_CAROLIEiJ_G0016838) #22	Psmd11 (MGP_CAROLIEiJ_G0016839) #23	Cdk5r1 (MGP_CAROLIEiJ_G0016840) #24	Myo1d (MGP_CAROLIEiJ_G0016841) #25	Tmem98 (MGP_CAROLIEiJ_G0016842) #26	Spaca3 (MGP_CAROLIEiJ_G0016843) #27	Asic2 (MGP_CAROLIEiJ_G0016844) #28	MGP_CAROLIEiJ_G0016845	MGP_CAROLIEiJ_G0016846	Ccl2 (MGP_CAROLIEiJ_G0016847) #30	Ccl7 (MGP_CAROLIEiJ_G0016848) ##30	Ccl11 (MGP_CAROLIEiJ_G0016849) ##30	Ccl12 (MGP_CAROLIEiJ_G0016850) ##30	Ccl8 (MGP_CAROLIEiJ_G0016851) ##30	Ccl1 (MGP_CAROLIEiJ_G0016852) #33	Tmem132e (MGP_CAROLIEiJ_G0016853) #34
Shrew mouse	MODERN SPECIES	5	Omg (MGP_PahariEiJ_G0017960)	MGP_PahariEiJ_G0017961	MGP_PahariEiJ_G0017962	Evi2a (MGP_PahariEiJ_G0017963) #7	Rab11fip4 (MGP_PahariEiJ_G0017964) #9	Utp6 (MGP_PahariEiJ_G0017965) #12	Suz12 (MGP_PahariEiJ_G0017966) #13	Crlf3 (MGP_PahariEiJ_G0017967) #14	Atad5 (MGP_PahariEiJ_G0017968) #15	Tefm (MGP_PahariEiJ_G0017969) #16	Adap2 (MGP_PahariEiJ_G0017970) #17	Rnf135 (MGP_PahariEiJ_G0017971)	Rhot1 (MGP_PahariEiJ_G0017972) #19	MGP_PahariEiJ_G0017973 #20	5730455P16Rik (MGP_PahariEiJ_G0017974) #21	Zfp207 (MGP_PahariEiJ_G0017975) #22	Psmd11 (MGP_PahariEiJ_G0017976) #23	Cdk5r1 (MGP_PahariEiJ_G0017977) #24	Myo1d (MGP_PahariEiJ_G0017978) #25	Tmem98 (MGP_PahariEiJ_G0017979) #26	Spaca3 (MGP_PahariEiJ_G0017980) #27	Asic2 (MGP_PahariEiJ_G0017981) #28	MGP_PahariEiJ_G0017982	MGP_PahariEiJ_G0017983	Ccl2 (MGP_PahariEiJ_G0017984) #30	Ccl7 (MGP_PahariEiJ_G0017985) ##30	Ccl11 (MGP_PahariEiJ_G0017986) ##30	MGP_PahariEiJ_G0017987 ##30	MGP_PahariEiJ_G0017988 ##30	Ccl1 (MGP_PahariEiJ_G0017989) #33	Tmem132e (MGP_PahariEiJ_G0017990) #34
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	1422													Rhot1 (ENSNGAG00000002156) #19	Rhbdl3 (ENSNGAG00000011451) #20	5730455P16Rik (ENSNGAG00000008162) #21	ENSNGAG00000018144 #22	Psmd11 (ENSNGAG00000007349) #23	Cdk5r1 (ENSNGAG00000015681) #24	Myo1d (ENSNGAG00000014753) #25	Tmem98 (ENSNGAG00000000432) #26	Spaca3 (ENSNGAG00000019287) #27	Asic2 (ENSNGAG00000017605) #28	Ccl2 (ENSNGAG00000013703) #30	Ccl7 (ENSNGAG00000012785) ##30	ENSNGAG00000010601 #31	Ccl12 (ENSNGAG00000015220) ##30	ENSNGAG00000008109 #31	Ccl1 (ENSNGAG00000003526) #33	Tmem132e (ENSNGAG00000014402) #34	ENSNGAG00000017447	Cct6b (ENSNGAG00000011636) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1276	Fam13a (ENSNGAG00000016431)	Tigd2 (ENSNGAG00000013979)	Gprin3 (ENSNGAG00000000029)	Snca (ENSNGAG00000017413)	Mmrn1 (ENSNGAG00000013643)	ENSNGAG00000014274	ENSNGAG00000012453	Grid2 (ENSNGAG00000018830)	Atoh1 (ENSNGAG00000017323)	Smarcad1 (ENSNGAG00000000810)	Hpgds (ENSNGAG00000012687)	Qrfprl (ENSNGAG00000010835)	Tnip3 (ENSNGAG00000013422)	Ndnf (ENSNGAG00000012166)	Prdm5 (ENSNGAG00000018317)	ENSNGAG00000020137 #22	Mad2l1 (ENSNGAG00000019258)	ENSNGAG00000011475	Gng12 (ENSNGAG00000004651)	Gadd45a (ENSNGAG00000010577)	ENSNGAG00000019203	ENSNGAG00000014083	Il23r (ENSNGAG00000017497)
Lesser Egyptian jerboa	MODERN SPECIES	131	Lrp2bp (ENSJJAG00000021416)	Snx25 (ENSJJAG00000011269)	ENSJJAG00000016310	Cfap97 (ENSJJAG00000022129)	Slc25a4 (ENSJJAG00000000440)	Helt (ENSJJAG00000000703)	ENSJJAG00000001971	Acsl1 (ENSJJAG00000011663)	Cenpu (ENSJJAG00000018172)	Primpol (ENSJJAG00000020921)	Casp3 (ENSJJAG00000010159)	ENSJJAG00000005302	ENSJJAG00000011175	ENSJJAG00000015216	Enpp6 (ENSJJAG00000015782)	ENSJJAG00000023183 #22	ENSJJAG00000000499	Stox2 (ENSJJAG00000020846)	ENSJJAG00000005969
Kangaroo rat	MODERN SPECIES	350	Omg (ENSDORG00000026854)	Evi2b (ENSDORG00000011472)	Evi2a (ENSDORG00000026168) #7	Nf1 (ENSDORG00000011467) #8	Rab11fip4 (ENSDORG00000011807) #9	Utp6 (ENSDORG00000003843) #12	Suz12 (ENSDORG00000000460) #13	Crlf3 (ENSDORG00000015909) #14	Atad5 (ENSDORG00000000344) #15	Tefm (ENSDORG00000000352) #16	Adap2 (ENSDORG00000006678) #17	ENSDORG00000025558 #18	Rhot1 (ENSDORG00000001407) #19	Rhbdl3 (ENSDORG00000024743) #20	5730455P16Rik (ENSDORG00000007133) #21	Zfp207 (ENSDORG00000007139) #22	Psmd11 (ENSDORG00000011438) #23	Cdk5r1 (ENSDORG00000011445) #24	Myo1d (ENSDORG00000011446) #25	Tmem98 (ENSDORG00000026828) #26	Spaca3 (ENSDORG00000015899) #27	Asic2 (ENSDORG00000015901) #28	Ccl7 (ENSDORG00000003289) ##30	ENSDORG00000007302 #31	Tmem132e (ENSDORG00000006863) #34
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.c.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.c.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.c.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37	ENSGT00390000012719.a
Long-tailed chinchilla	MODERN SPECIES	188	OMG (ENSCLAG00000012747)	EVI2B (ENSCLAG00000017819)	EVI2A (ENSCLAG00000013303) #7	RAB11FIP4 (ENSCLAG00000012724) #9	COPRS (ENSCLAG00000013385) #11	UTP6 (ENSCLAG00000007274) #12	SUZ12 (ENSCLAG00000008281) #13	CRLF3 (ENSCLAG00000009651) #14	ATAD5 (ENSCLAG00000009928) #15	TEFM (ENSCLAG00000006597) #16	ADAP2 (ENSCLAG00000005862) #17	ENSCLAG00000007154 #18	RHOT1 (ENSCLAG00000007856) #19	RHBDL3 (ENSCLAG00000008877) #20	C17orf75 (ENSCLAG00000007683) #21	ZNF207 (ENSCLAG00000006441) #22	PSMD11 (ENSCLAG00000009489) #23	CDK5R1 (ENSCLAG00000017838) #24	MYO1D (ENSCLAG00000009101) #25	TMEM98 (ENSCLAG00000007965) #26	SPACA3 (ENSCLAG00000008459) #27	ASIC2 (ENSCLAG00000004876) #28	ENSCLAG00000005731 ##30	ENSCLAG00000006066 ##30	CCL11 (ENSCLAG00000004752) #31	ENSCLAG00000005107 ##30	ENSCLAG00000006411 #33	TMEM132E (ENSCLAG00000006946) #34	CCT6B (ENSCLAG00000014724) #35	ZNF830 (ENSCLAG00000017672) #36	LIG3 (ENSCLAG00000009138) #37
Degu	MODERN SPECIES	113	NF1 (ENSODEG00000011949) #8	OMG (ENSODEG00000011985)	EVI2B (ENSODEG00000013035)	RAB11FIP4 (ENSODEG00000015676) #9	ENSODEG00000012209	COPRS (ENSODEG00000011871) #11	UTP6 (ENSODEG00000011971) #12	SUZ12 (ENSODEG00000013459) #13	ENSODEG00000013349 #14	ATAD5 (ENSODEG00000014008) #15	ADAP2 (ENSODEG00000011944) #17	ENSODEG00000013107 #18	RHOT1 (ENSODEG00000012674) #19	RHBDL3 (ENSODEG00000012800) #20	C17orf75 (ENSODEG00000012638) #21	ZNF207 (ENSODEG00000012683) #22	ENSODEG00000013615 #23	ENSODEG00000014487 #23	CDK5R1 (ENSODEG00000020159) #24	MYO1D (ENSODEG00000012420) #25	TMEM98 (ENSODEG00000012273) #26	ENSODEG00000012654 #27	ASIC2 (ENSODEG00000012964) #28	CCL11 (ENSODEG00000013280) #31	ENSODEG00000013352 #33	TMEM132E (ENSODEG00000013225) #34	CCT6B (ENSODEG00000013365) #35	ENSODEG00000020133	ZNF830 (ENSODEG00000012121) #36	LIG3 (ENSODEG00000014335) #37	RFFL (ENSODEG00000013992)
Guinea pig	MODERN SPECIES	32	OR4K2 (ENSCPOG00000030333)	OR4Q3 (ENSCPOG00000020338)	RAB11FIP4 (ENSCPOG00000011634) #9	COPRS (ENSCPOG00000006018) #11	UTP6 (ENSCPOG00000014294) #12	ENSCPOG00000034287	SUZ12 (ENSCPOG00000024628) #13	CRLF3 (ENSCPOG00000008693) #14	ATAD5 (ENSCPOG00000011900) #15	TEFM (ENSCPOG00000011909) #16	ADAP2 (ENSCPOG00000004369) #17	RNF135 (ENSCPOG00000004880) #18	RHOT1 (ENSCPOG00000007927) #19	RHBDL3 (ENSCPOG00000022880) #20	C17orf75 (ENSCPOG00000013162) #21	ZNF207 (ENSCPOG00000001728) #22	PSMD11 (ENSCPOG00000009798) #23	CDK5R1 (ENSCPOG00000020676) #24	MYO1D (ENSCPOG00000000149) #25	TMEM98 (ENSCPOG00000000153) #26	SPACA3 (ENSCPOG00000027605) #27	ASIC2 (ENSCPOG00000025132) #28	ENSCPOG00000033808 ##30	ENSCPOG00000013468 ##30	CCL7 (ENSCPOG00000013035) ##30	CCL11 (ENSCPOG00000032138) #31	ENSCPOG00000033402 ##30	TMEM132E (ENSCPOG00000001908) #34	CCT6B (ENSCPOG00000002794) #35	ZNF830 (ENSCPOG00000031218) #36	LIG3 (ENSCPOG00000013032) #37
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000017502	MPO (ENSHGLG00000019104)	LPO (ENSHGLG00000018067)	MKS1 (ENSHGLG00000012631)	ENSHGLG00000037944	ENSHGLG00000045253 ##30	ENSHGLG00000010660 #16	ENSHGLG00000009908 #15	ENSHGLG00000010534	ENSHGLG00000010961 #17	ENSHGLG00000041636 #18	RHOT1 (ENSHGLG00000011785) #19	ENSHGLG00000049011 #20	C17orf75 (ENSHGLG00000019463) #21	ENSHGLG00000002460	ZNF207 (ENSHGLG00000019501) #22	PSMD11 (ENSHGLG00000019505) #23	CDK5R1 (ENSHGLG00000037917) #24	MYO1D (ENSHGLG00000015796) #25	TMEM98 (ENSHGLG00000015858) #26	SPACA3 (ENSHGLG00000015911) #27	ASIC2 (ENSHGLG00000000958) #28	CCL2 (ENSHGLG00000034308) ##30	CCL11 (ENSHGLG00000001015) #31	ENSHGLG00000001025 ##30	ENSHGLG00000042122 #33	Lig3 (ENSHGLG00000001349) #37	ENSHGLG00000001734	RAD51D (ENSHGLG00000001857)	FNDC8 (ENSHGLG00000001963)	NLE1 (ENSHGLG00000002006)
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Eurasian red squirrel	MODERN SPECIES	12	OMG (ENSSVLG00005015267)	EVI2B (ENSSVLG00005015286)	EVI2A (ENSSVLG00005015311) #7	RAB11FIP4 (ENSSVLG00005015383) #9	COPRS (ENSSVLG00005015650) #11	UTP6 (ENSSVLG00005015715) #12	SUZ12 (ENSSVLG00005015781) #13	CRLF3 (ENSSVLG00005016089) #14	ATAD5 (ENSSVLG00005016127) #15	TEFM (ENSSVLG00005016323) #16	ADAP2 (ENSSVLG00005016368) #17	RNF135 (ENSSVLG00005016571) #18	RHOT1 (ENSSVLG00005016781) #19	RHBDL3 (ENSSVLG00005016946) #20	C17orf75 (ENSSVLG00005017088) #21	ZNF207 (ENSSVLG00005017171) #22	ENSSVLG00005017498 #23	CDK5R1 (ENSSVLG00005017534) #24	MYO1D (ENSSVLG00005017566) #25	ENSSVLG00005017677	TMEM98 (ENSSVLG00005017715) #26	ENSSVLG00005017765 #27	ASIC2 (ENSSVLG00005017834) #28	ENSSVLG00005018047	ENSSVLG00005018082	ENSSVLG00005018128	ENSSVLG00005018180	ENSSVLG00005018242	ENSSVLG00005018284	ENSSVLG00005018440	ENSSVLG00005018536
Marmotini	ANCESTRAL SPECIES	39	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36	ENSGT00940000156492 #37
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES	34	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057.q #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a.b ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.c.a ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Squirrel	MODERN SPECIES	138	OMG (ENSSTOG00000005562)	EVI2B (ENSSTOG00000026274)	NF1 (ENSSTOG00000034066) #8	RAB11FIP4 (ENSSTOG00000010883) #9	COPRS (ENSSTOG00000025397) #11	UTP6 (ENSSTOG00000015875) #12	SUZ12 (ENSSTOG00000022754) #13	CRLF3 (ENSSTOG00000012342) #14	ATAD5 (ENSSTOG00000025411) #15	TEFM (ENSSTOG00000012367) #16	ADAP2 (ENSSTOG00000025811) #17	RNF135 (ENSSTOG00000027338) #18	RHOT1 (ENSSTOG00000011738) #19	RHBDL3 (ENSSTOG00000000698) #20	C17orf75 (ENSSTOG00000000705) #21	ENSSTOG00000000712 #22	PSMD11 (ENSSTOG00000009686) #23	CDK5R1 (ENSSTOG00000009703) #24	MYO1D (ENSSTOG00000000438) #25	TMEM98 (ENSSTOG00000011945) #26	ASIC2 (ENSSTOG00000027185) #28	ENSSTOG00000028166 #30	CCL7 (ENSSTOG00000032557) ##30	CCL11 (ENSSTOG00000012718) #31	ENSSTOG00000023292 ##30	CCL1 (ENSSTOG00000007409) ##30	TMEM132E (ENSSTOG00000024193) #34	CCT6B (ENSSTOG00000027687) #35	ZNF830 (ENSSTOG00000006057) #36	LIG3 (ENSSTOG00000006065) #37	RFFL (ENSSTOG00000006115)
Arctic ground squirrel	MODERN SPECIES	63	EVI2B (ENSUPAG00010022480)	EVI2A (ENSUPAG00010022481) #7	RAB11FIP4 (ENSUPAG00010022484) #9	ENSUPAG00010022485	COPRS (ENSUPAG00010022492) #11	ENSUPAG00010022494 #12	SUZ12 (ENSUPAG00010022503) #13	CRLF3 (ENSUPAG00010022508) #14	ATAD5 (ENSUPAG00010022514) #15	TEFM (ENSUPAG00010022537) #16	ADAP2 (ENSUPAG00010022538) #17	RNF135 (ENSUPAG00010022541) #18	RHOT1 (ENSUPAG00010022548) #19	RHBDL3 (ENSUPAG00010023045) #20	C17orf75 (ENSUPAG00010023047) #21	ZNF207 (ENSUPAG00010023051) #22	PSMD11 (ENSUPAG00010023057) #23	CDK5R1 (ENSUPAG00010023059) #24	MYO1D (ENSUPAG00010023060) #25	TMEM98 (ENSUPAG00010023062) #26	SPACA3 (ENSUPAG00010023063) #27	ASIC2 (ENSUPAG00010023064) #28
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00730000111057.r #22
Squirrel	MODERN SPECIES	573																ENSSTOG00000030534 #22
Alpin marmot	MODERN SPECIES	71	EVI2B (ENSMMMG00000012769)	EVI2A (ENSMMMG00000012771) #7	ENSMMMG00000012772	RAB11FIP4 (ENSMMMG00000012781) #9	ENSMMMG00000012799	COPRS (ENSMMMG00000012825) #11	UTP6 (ENSMMMG00000012830) #12	SUZ12 (ENSMMMG00000012866) #13	CRLF3 (ENSMMMG00000012930) #14	TEFM (ENSMMMG00000012960) #16	ADAP2 (ENSMMMG00000012962) #17	RNF135 (ENSMMMG00000012984) #18	RHOT1 (ENSMMMG00000013006) #19	RHBDL3 (ENSMMMG00000013354) #20	C17orf75 (ENSMMMG00000013368) #21	ZNF207 (ENSMMMG00000013387) #22	PSMD11 (ENSMMMG00000013441) #23	CDK5R1 (ENSMMMG00000013447) #24	MYO1D (ENSMMMG00000013449) #25	ENSMMMG00000013474 #26	SPACA3 (ENSMMMG00000013483) #27	ASIC2 (ENSMMMG00000013492) #28	ENSMMMG00000013509 #30	CCL7 (ENSMMMG00000013514) ##30	CCL11 (ENSMMMG00000013522) #31	ENSMMMG00000013534 ##30	ENSMMMG00000013542 #33	ENSMMMG00000013547 #34	CCT6B (ENSMMMG00000013567) #35	ZNF830 (ENSMMMG00000013592) #36	LIG3 (ENSMMMG00000013596) #37
Primates	ANCESTRAL SPECIES	3	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Strepsirrhini	ANCESTRAL SPECIES	4	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Lemuriformes	ANCESTRAL SPECIES	2	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Mouse lemur	MODERN SPECIES	7	ENSMICG00000037781	NF1 (ENSMICG00000002852) #8	OMG (ENSMICG00000002876)	RAB11FIP4 (ENSMICG00000002885) #9	COPRS (ENSMICG00000029453) #11	UTP6 (ENSMICG00000002632) #12	SUZ12 (ENSMICG00000002637) #13	CRLF3 (ENSMICG00000033044) #14	ATAD5 (ENSMICG00000003613) #15	TEFM (ENSMICG00000009936) #16	ADAP2 (ENSMICG00000003621) #17	RNF135 (ENSMICG00000005151) #18	RHOT1 (ENSMICG00000007771) #19	RHBDL3 (ENSMICG00000007783) #20	C17orf75 (ENSMICG00000007788) #21	ZNF207 (ENSMICG00000002395) #22	ENSMICG00000026860	PSMD11 (ENSMICG00000011849) #23	CDK5R1 (ENSMICG00000042797) #24	MYO1D (ENSMICG00000011863) #25	TMEM98 (ENSMICG00000011888) #26	SPACA3 (ENSMICG00000043535) #27	ASIC2 (ENSMICG00000035781) #28	CCL2 (ENSMICG00000034682) #30	CCL8 (ENSMICG00000037888) #32	CCL13 (ENSMICG00000036035) ##30	CCL1 (ENSMICG00000042374) ##30	TMEM132E (ENSMICG00000003085) #34	CCT6B (ENSMICG00000035976) #35	LIG3 (ENSMICG00000006814) #37	RFFL (ENSMICG00000006829)
Lemuriformes_a	ANCESTRAL SPECIES		ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Greater bamboo lemur	MODERN SPECIES	167	EVI2A (ENSPSMG00000015849) #7	RAB11FIP4 (ENSPSMG00000015899) #9	ENSPSMG00000015918	COPRS (ENSPSMG00000015946) #11	UTP6 (ENSPSMG00000016038) #12	SUZ12 (ENSPSMG00000016122) #13	CRLF3 (ENSPSMG00000016147) #14	ATAD5 (ENSPSMG00000016178) #15	TEFM (ENSPSMG00000016197) #16	ADAP2 (ENSPSMG00000016226) #17	RNF135 (ENSPSMG00000016233) #18	RHOT1 (ENSPSMG00000016604) #19	RHBDL3 (ENSPSMG00000016749) #20	ENSPSMG00000016756	C17orf75 (ENSPSMG00000016774) #21	ZNF207 (ENSPSMG00000016931) #22	PSMD11 (ENSPSMG00000016979) #23	CDK5R1 (ENSPSMG00000016985) #24	MYO1D (ENSPSMG00000017027) #25	TMEM98 (ENSPSMG00000017093) #26	SPACA3 (ENSPSMG00000017102) #27	ASIC2 (ENSPSMG00000017117) #28	CCL2 (ENSPSMG00000017119) #30	ENSPSMG00000017122 ##30	CCL11 (ENSPSMG00000017132) #31	CCL8 (ENSPSMG00000017139) #32	CCL13 (ENSPSMG00000017153) ##30	TMEM132E (ENSPSMG00000017176) #34	ENSPSMG00000017180	CCT6B (ENSPSMG00000017271) #35	ZNF830 (ENSPSMG00000017386) #36
Coquerels sifaka	MODERN SPECIES	400	WSB1 (ENSPCOG00000026459)	NF1 (ENSPCOG00000025474) #8	RAB11FIP4 (ENSPCOG00000027596) #9	ENSPCOG00000017944	COPRS (ENSPCOG00000016471) #11	UTP6 (ENSPCOG00000010224) #12	SUZ12 (ENSPCOG00000014564) #13	CRLF3 (ENSPCOG00000015459) #14	ATAD5 (ENSPCOG00000017323) #15	TEFM (ENSPCOG00000022322) #16	ADAP2 (ENSPCOG00000020468) #17	RNF135 (ENSPCOG00000022621) #18	ENSPCOG00000014537 #19	RHBDL3 (ENSPCOG00000027181) #20	C17orf75 (ENSPCOG00000028496) #21	ZNF207 (ENSPCOG00000020744) #22	PSMD11 (ENSPCOG00000020989) #23	CDK5R1 (ENSPCOG00000002073) #24	MYO1D (ENSPCOG00000015762) #25	TMEM98 (ENSPCOG00000020899) #26	SPACA3 (ENSPCOG00000018597) #27	ASIC2 (ENSPCOG00000025881) #28	CCL2 (ENSPCOG00000015709) #30	ENSPCOG00000009890	CCL11 (ENSPCOG00000013678) #31	CCL8 (ENSPCOG00000003413) #32	CCL13 (ENSPCOG00000020576) ##30	CCL1 (ENSPCOG00000027470) ##30	TMEM132E (ENSPCOG00000014193) #34
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	227	EVI2B (ENSOGAG00000010069)	EVI2A (ENSOGAG00000033499) #7	ENSOGAG00000032163 #8	RAB11FIP4 (ENSOGAG00000016294) #9	COPRS (ENSOGAG00000004510) #11	UTP6 (ENSOGAG00000004511) #12	SUZ12 (ENSOGAG00000016923) #13	CRLF3 (ENSOGAG00000001185) #14	ATAD5 (ENSOGAG00000001186) #15	TEFM (ENSOGAG00000001190) #16	ADAP2 (ENSOGAG00000001192) #17	RNF135 (ENSOGAG00000001193) #18	RHOT1 (ENSOGAG00000001194) #19	RHBDL3 (ENSOGAG00000001197) #20	C17orf75 (ENSOGAG00000001198) #21	ENSOGAG00000001200 #22	PSMD11 (ENSOGAG00000015456) #23	CDK5R1 (ENSOGAG00000034547) #24	MYO1D (ENSOGAG00000015457) #25	TMEM98 (ENSOGAG00000015459) #26	SPACA3 (ENSOGAG00000025382) #27	ASIC2 (ENSOGAG00000015461) #28	CCL7 (ENSOGAG00000003894) ##30	CCL11 (ENSOGAG00000003893) #31	ENSOGAG00000028610 ##30	CCL13 (ENSOGAG00000003892) ##30	ENSOGAG00000003889 ##30	TMEM132E (ENSOGAG00000008267) #34	CCT6B (ENSOGAG00000009862) #35	ZNF830 (ENSOGAG00000009870) #36	LIG3 (ENSOGAG00000009871) #37
Bushbaby	MODERN SPECIES	232			ENSOGAG00000032990	GPR101 (ENSOGAG00000006478)	ZIC3 (ENSOGAG00000011700)	ENSOGAG00000025744	ENSOGAG00000027112	FGF13 (ENSOGAG00000031744)	ENSOGAG00000030480	ENSOGAG00000029354	ENSOGAG00000028887	F9 (ENSOGAG00000000863)	MCF2 (ENSOGAG00000000864)	ATP11C (ENSOGAG00000002088)	ENSOGAG00000015306	ENSOGAG00000029856 #22	ENSOGAG00000033659	ENSOGAG00000030168	ENSOGAG00000034439	ENSOGAG00000031982	ENSOGAG00000028331	ENSOGAG00000034324	SOX3 (ENSOGAG00000025781)	ENSOGAG00000026459	ENSOGAG00000029605	ENSOGAG00000034583	LDOC1 (ENSOGAG00000034696)	ENSOGAG00000029867	ENSOGAG00000029270	SLITRK4 (ENSOGAG00000007373)
Haplorrhini	ANCESTRAL SPECIES	6	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493 #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33
Tarsier	MODERN SPECIES	2201																ZNF207 (ENSTSYG00000003620) #22	PSMD11 (ENSTSYG00000012073) #23	CDK5R1 (ENSTSYG00000011930) #24	MYO1D (ENSTSYG00000011934) #25
Simiiformes	ANCESTRAL SPECIES	7	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34
Catarrhini	ANCESTRAL SPECIES	8	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008
Hominoidea	ANCESTRAL SPECIES	27	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384.c.a #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008
Hominidae	ANCESTRAL SPECIES	20	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384.d #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008
Orangutan	MODERN SPECIES	8	EVI2A (ENSPPYG00000008150) #7	EVI2B (ENSPPYG00000008149)	OMG (ENSPPYG00000008148)	ENSPPYG00000008146	RNF135 (ENSPPYG00000008145) #18	ADAP2 (ENSPPYG00000008144) #17	TEFM (ENSPPYG00000008143) #16	ATAD5 (ENSPPYG00000039479) #15	CRLF3 (ENSPPYG00000008142) #14	ENSPPYG00000040619	ENSPPYG00000008155	RHOT1 (ENSPPYG00000008157) #19	ENSPPYG00000008158	RHBDL3 (ENSPPYG00000008159) #20	C17H17orf75 (ENSPPYG00000008160) #21	ZNF207 (ENSPPYG00000008161) #22	PSMD11 (ENSPPYG00000008162) #23	CDK5R1 (ENSPPYG00000008163) #24	MYO1D (ENSPPYG00000008164) #25	TMEM98 (ENSPPYG00000008166) #26	SPACA3 (ENSPPYG00000008867) #27	ASIC2 (ENSPPYG00000008167) #28	CCL2 (ENSPPYG00000008169) #30	CCL7 (ENSPPYG00000008170) ##30	CCL11 (ENSPPYG00000008171) #31	CCL8 (ENSPPYG00000029480) #32	CCL13 (ENSPPYG00000036667) ##30	CCL1 (ENSPPYG00000041084) ##30	TMEM132E (ENSPPYG00000008862) #34	CCT6B (ENSPPYG00000008174) #35	ZNF830 (ENSPPYG00000008175) #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	1	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384.d #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b.g.a #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00910000148183	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	18	ENSGGOG00000025742	EVI2B (ENSGGOG00000005182)	EVI2A (ENSGGOG00000024807) #7	NF1 (ENSGGOG00000006983) #8	RAB11FIP4 (ENSGGOG00000001071) #9	COPRS (ENSGGOG00000007292) #11	UTP6 (ENSGGOG00000013569) #12	SUZ12 (ENSGGOG00000010352) #13	ENSGGOG00000026947	ENSGGOG00000043944	ENSGGOG00000037185	RHOT1 (ENSGGOG00000006643) #19	ENSGGOG00000037024	RHBDL3 (ENSGGOG00000010876) #20	C17orf75 (ENSGGOG00000002514) #21	ENSGGOG00000024003 #22	PSMD11 (ENSGGOG00000001054) #23	CDK5R1 (ENSGGOG00000040028) #24	MYO1D (ENSGGOG00000000276) #25	TMEM98 (ENSGGOG00000013333) #26	SPACA3 (ENSGGOG00000001125) #27	ENSGGOG00000040939 #28	ENSGGOG00000041068 #29	CCL2 (ENSGGOG00000016211) #30	CCL7 (ENSGGOG00000004500) ##30	ENSGGOG00000044068 #31	ENSGGOG00000044171 #31	CCL8 (ENSGGOG00000004504) #32	CCL13 (ENSGGOG00000002887) ##30	CCL1 (ENSGGOG00000028387) ##30	TMEM132E (ENSGGOG00000015325) #34
Gorilla	MODERN SPECIES	15	DYTN (ENSGGOG00000027242)	FAM237A (ENSGGOG00000037017)	ADAM23 (ENSGGOG00000012509)	ENSGGOG00000024971	ZDBF2 (ENSGGOG00000023142)	ENSGGOG00000042195	EEF1B2 (ENSGGOG00000007002)	NDUFS1 (ENSGGOG00000001513)	INO80D (ENSGGOG00000015570)	NRP2 (ENSGGOG00000009537)	PARD3B (ENSGGOG00000034911)	ICOS (ENSGGOG00000014097)	CTLA4 (ENSGGOG00000007961)	ENSGGOG00000039900	CD28 (ENSGGOG00000041735)	ENSGGOG00000023735 #22	RAPH1 (ENSGGOG00000016399)	ABI2 (ENSGGOG00000016384)	CYP20A1 (ENSGGOG00000007044)	NBEAL1 (ENSGGOG00000015453)	ENSGGOG00000036442	WDR12 (ENSGGOG00000026073)	ICA1L (ENSGGOG00000017038)	ENSGGOG00000016194	ENSGGOG00000014813	BMPR2 (ENSGGOG00000010989)	ENSGGOG00000042085	ENSGGOG00000014545	ENSGGOG00000026439	ENSGGOG00000007480	ENSGGOG00000027043
Homo/Pan group	ANCESTRAL SPECIES	2	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384.c.a #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b.g.a #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00910000148183	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00740000117022	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008	ENSGT00940000158479 #34
Human	MODERN SPECIES	8	ADAP2 (ENSG00000184060) #17	RNF135 (ENSG00000181481) #18	NF1 (ENSG00000196712) #8	OMG (ENSG00000126861)	EVI2B (ENSG00000185862)	ENSG00000265118	EVI2A (ENSG00000126860) #7	RAB11FIP4 (ENSG00000131242) #9	COPRS (ENSG00000172301) #11	UTP6 (ENSG00000108651) #12	SUZ12 (ENSG00000178691) #13	LRRC37B (ENSG00000185158)	RHOT1 (ENSG00000126858) #19	RHBDL3 (ENSG00000141314) #20	C17orf75 (ENSG00000108666) #21	ZNF207 (ENSG00000010244) #22	PSMD11 (ENSG00000108671) #23	CDK5R1 (ENSG00000176749) #24	MYO1D (ENSG00000176658) #25	H2BN1 (ENSG00000290320)	TMEM98 (ENSG00000006042) #26	SPACA3 (ENSG00000141316) #27	ASIC2 (ENSG00000108684) #28	CCL2 (ENSG00000108691) #30	CCL7 (ENSG00000108688) ##30	CCL11 (ENSG00000172156) #31	CCL8 (ENSG00000108700) #32	CCL13 (ENSG00000181374) ##30	CCL1 (ENSG00000108702) ##30	TMEM132E (ENSG00000181291) #34	CCT6B (ENSG00000132141) #35
Pan	ANCESTRAL SPECIES	3	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384.d #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b.g.a #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00910000148183	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	8	NF1 (ENSPTRG00000008970) #8	RAB11FIP4 (ENSPTRG00000008974) #9	COPRS (ENSPTRG00000008976) #11	UTP6 (ENSPTRG00000008977) #12	SUZ12 (ENSPTRG00000008980) #13	CRLF3 (ENSPTRG00000008963) #14	ATAD5 (ENSPTRG00000008964) #15	TEFM (ENSPTRG00000008965) #16	ADAP2 (ENSPTRG00000008966) #17	RNF135 (ENSPTRG00000008967) #18	ENSPTRG00000050077	RHOT1 (ENSPTRG00000008986) #19	ENSPTRG00000051245	RHBDL3 (ENSPTRG00000008987) #20	C17H17orf75 (ENSPTRG00000008988) #21	ZNF207 (ENSPTRG00000008989) #22	PSMD11 (ENSPTRG00000008990) #23	CDK5R1 (ENSPTRG00000030892) #24	MYO1D (ENSPTRG00000008991) #25	TMEM98 (ENSPTRG00000008993) #26	SPACA3 (ENSPTRG00000049269) #27	ASIC2 (ENSPTRG00000008996) #28	CCL2 (ENSPTRG00000008999) #30	CCL7 (ENSPTRG00000009000) ##30	CCL11 (ENSPTRG00000048230) #31	CCL8 (ENSPTRG00000009002) #32	CCL13 (ENSPTRG00000043899) ##30	CCL1 (ENSPTRG00000009004) ##30	TMEM132E (ENSPTRG00000009005) #34	CCT6B (ENSPTRG00000023221) #35	ZNF830 (ENSPTRG00000009007) #36
Chimpanzee	MODERN SPECIES	15	DYTN (ENSPTRG00000042355)	FAM237A (ENSPTRG00000045763)	ADAM23 (ENSPTRG00000012846)	ZDBF2 (ENSPTRG00000029052)	ENSPTRG00000052002	CMKLR2 (ENSPTRG00000012844)	EEF1B2 (ENSPTRG00000049619)	NDUFS1 (ENSPTRG00000012842)	INO80D (ENSPTRG00000012841)	NRP2 (ENSPTRG00000012839)	PARD3B (ENSPTRG00000012838)	ICOS (ENSPTRG00000012837)	CTLA4 (ENSPTRG00000044793)	ENSPTRG00000051964	CD28 (ENSPTRG00000012833)	ENSPTRG00000043246 #22	RAPH1 (ENSPTRG00000012831)	ABI2 (ENSPTRG00000012830)	ENSPTRG00000012829	NBEAL1 (ENSPTRG00000012828)	CARF (ENSPTRG00000012824)	WDR12 (ENSPTRG00000012823)	ICA1L (ENSPTRG00000012822)	ENSPTRG00000044806	ENSPTRG00000040928	FAM117B (ENSPTRG00000012821)	BMPR2 (ENSPTRG00000029076)	ENSPTRG00000047517	NOP58 (ENSPTRG00000012818)	ENSPTRG00000012817	ENSPTRG00000049039
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES	8	NF1 (ENSPPAG00000030406) #8	RAB11FIP4 (ENSPPAG00000036623) #9	ENSPPAG00000039082 #11	UTP6 (ENSPPAG00000038089) #12	CRLF3 (ENSPPAG00000037920) #14	ATAD5 (ENSPPAG00000030438) #15	TEFM (ENSPPAG00000039403) #16	ADAP2 (ENSPPAG00000027684) #17	ENSPPAG00000031531 #18	ENSPPAG00000022296	ENSPPAG00000012149	RHOT1 (ENSPPAG00000027700) #19	ENSPPAG00000034448	RHBDL3 (ENSPPAG00000027407) #20	C17orf75 (ENSPPAG00000028763) #21	ENSPPAG00000032098 #22	PSMD11 (ENSPPAG00000044105) #23	CDK5R1 (ENSPPAG00000030747) #24	MYO1D (ENSPPAG00000036175) #25	TMEM98 (ENSPPAG00000037372) #26	SPACA3 (ENSPPAG00000039834) #27	ENSPPAG00000038474	ENSPPAG00000035274 #28	CCL2 (ENSPPAG00000033176) #30	CCL7 (ENSPPAG00000029310) ##30	CCL11 (ENSPPAG00000041920) #31	CCL8 (ENSPPAG00000039853) #32	CCL13 (ENSPPAG00000041440) ##30	CCL1 (ENSPPAG00000004362) ##30	ENSPPAG00000041711	TMEM132E (ENSPPAG00000034783) #34
Bonobo	MODERN SPECIES	15	ENSPPAG00000031338	DYTN (ENSPPAG00000008787)	FAM237A (ENSPPAG00000028915)	ADAM23 (ENSPPAG00000030147)	ZDBF2 (ENSPPAG00000038901)	ENSPPAG00000031391	ENSPPAG00000033754	NDUFS1 (ENSPPAG00000032284)	INO80D (ENSPPAG00000017120)	ENSPPAG00000040957	NRP2 (ENSPPAG00000041062)	PARD3B (ENSPPAG00000033958)	ICOS (ENSPPAG00000037117)	CTLA4 (ENSPPAG00000041661)	CD28 (ENSPPAG00000034998)	ENSPPAG00000032675 #22	RAPH1 (ENSPPAG00000024317)	ABI2 (ENSPPAG00000030582)	CYP20A1 (ENSPPAG00000040724)	NBEAL1 (ENSPPAG00000040934)	CARF (ENSPPAG00000042960)	ENSPPAG00000033697	ICA1L (ENSPPAG00000037623)	ENSPPAG00000027947	FAM117B (ENSPPAG00000041596)	BMPR2 (ENSPPAG00000017269)	ENSPPAG00000043823	NOP58 (ENSPPAG00000036626)	ENSPPAG00000039520	ENSPPAG00000039551	ENSPPAG00000036444
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	4	FOXN2 (ENSNLEG00000008649)	MSH6 (ENSNLEG00000008521)	FBXO11 (ENSNLEG00000008539)	ENSNLEG00000029761	MSH2 (ENSNLEG00000008421)	EPCAM (ENSNLEG00000008380)	ENSNLEG00000035354	CRLF3 (ENSNLEG00000005850) #14	ATAD5 (ENSNLEG00000005853) #15	TEFM (ENSNLEG00000005875) #16	ADAP2 (ENSNLEG00000005879) #17	ENSNLEG00000030868	RHOT1 (ENSNLEG00000005886) #19	ENSNLEG00000005933 #20	C17orf75 (ENSNLEG00000031662) #21	ENSNLEG00000005954 #22	PSMD11 (ENSNLEG00000005992) #23	MYO1D (ENSNLEG00000006028) #25	ENSNLEG00000028584 #26	SPACA3 (ENSNLEG00000014819) #27	ENSNLEG00000006041 #28	ENSNLEG00000032286	CA4 (ENSNLEG00000000324)	ENSNLEG00000000355	ENSNLEG00000000340	CHCT1 (ENSNLEG00000000357)	ENSNLEG00000033351	ENSNLEG00000035218	APPBP2 (ENSNLEG00000000368)	PPM1D (ENSNLEG00000000379)	BCAS3 (ENSNLEG00000000387)
Gibbon	MODERN SPECIES	14	DYTN (ENSNLEG00000007113)	FAM237A (ENSNLEG00000007112)	ADAM23 (ENSNLEG00000007102)	ZDBF2 (ENSNLEG00000007100)	ENSNLEG00000033131	ENSNLEG00000007098	NDUFS1 (ENSNLEG00000007090)	INO80D (ENSNLEG00000032256)	NRP2 (ENSNLEG00000007071)	ENSNLEG00000036209	ENSNLEG00000007066	ICOS (ENSNLEG00000007065)	CTLA4 (ENSNLEG00000007059)	CD28 (ENSNLEG00000007057)	ENSNLEG00000029125	ENSNLEG00000035533 #22	ENSNLEG00000030127	RAPH1 (ENSNLEG00000007048)	ENSNLEG00000007043	CYP20A1 (ENSNLEG00000035097)	ENSNLEG00000029450	NBEAL1 (ENSNLEG00000007032)	CARF (ENSNLEG00000007026)	WDR12 (ENSNLEG00000007018)	ICA1L (ENSNLEG00000007012)	ENSNLEG00000027717	ENSNLEG00000029928	ENSNLEG00000007009	BMPR2 (ENSNLEG00000007004)	ENSNLEG00000031345	NOP58 (ENSNLEG00000007000)
Cercopithecidae	ANCESTRAL SPECIES	6	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Rhinopithecus	ANCESTRAL SPECIES	125	ENSGT00940000155671.q.a	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00390000006922.m.b.a.c.a	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00730000111572.b	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Black snub-nosed monkey	MODERN SPECIES	1024	ENSRBIG00000031245	COPRS (ENSRBIG00000040651) #11	UTP6 (ENSRBIG00000020822) #12	SUZ12 (ENSRBIG00000035000) #13	CRLF3 (ENSRBIG00000040685) #14	ENSRBIG00000043638	ATAD5 (ENSRBIG00000028803) #15	TEFM (ENSRBIG00000044300) #16	ADAP2 (ENSRBIG00000031583) #17	RNF135 (ENSRBIG00000032245) #18	ENSRBIG00000037919	RHOT1 (ENSRBIG00000028432) #19	ENSRBIG00000010676	RHBDL3 (ENSRBIG00000037522) #20	C17orf75 (ENSRBIG00000036493) #21	ZNF207 (ENSRBIG00000030664) #22	PSMD11 (ENSRBIG00000031642) #23	CDK5R1 (ENSRBIG00000029772) #24	MYO1D (ENSRBIG00000030384) #25	TMEM98 (ENSRBIG00000033509) #26	SPACA3 (ENSRBIG00000031083) #27	ENSRBIG00000011050	ASIC2 (ENSRBIG00000039882) #28	CCL2 (ENSRBIG00000039932) #30	CCL7 (ENSRBIG00000035832) ##30	CCL11 (ENSRBIG00000043002) #31	CCL8 (ENSRBIG00000040497) #32	CCL13 (ENSRBIG00000037720) ##30	CCL1 (ENSRBIG00000032049) ##30	TMEM132E (ENSRBIG00000034726) #34	ZNF830 (ENSRBIG00000029713) #36
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1659						ENSRROG00000039704	ATAD5 (ENSRROG00000040978) #15	TEFM (ENSRROG00000030422) #16	ADAP2 (ENSRROG00000033024) #17	RNF135 (ENSRROG00000043224) #18	ENSRROG00000043873	RHOT1 (ENSRROG00000041054) #19	ENSRROG00000009075	RHBDL3 (ENSRROG00000032686) #20	C17orf75 (ENSRROG00000035975) #21	ENSRROG00000037743 #22	PSMD11 (ENSRROG00000032071) #23	CDK5R1 (ENSRROG00000026898) #24	MYO1D (ENSRROG00000036278) #25	TMEM98 (ENSRROG00000044185) #26	SPACA3 (ENSRROG00000036513) #27	ASIC2 (ENSRROG00000036757) #28
Golden snub-nosed monkey	MODERN SPECIES	2758			ADAM23 (ENSRROG00000036437)	ZDBF2 (ENSRROG00000032109)	ENSRROG00000038360	CMKLR2 (ENSRROG00000015659)	ENSRROG00000041925	NDUFS1 (ENSRROG00000033953)	INO80D (ENSRROG00000003571)	NRP2 (ENSRROG00000040911)	PARD3B (ENSRROG00000013717)	ICOS (ENSRROG00000038288)	CTLA4 (ENSRROG00000028565)	ENSRROG00000034095	CD28 (ENSRROG00000043826)	ENSRROG00000034411 #22	ENSRROG00000006311	RAPH1 (ENSRROG00000010278)	ABI2 (ENSRROG00000040959)	CYP20A1 (ENSRROG00000040044)	NBEAL1 (ENSRROG00000015491)	CARF (ENSRROG00000045180)
Cercopithecinae	ANCESTRAL SPECIES	4	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00490000044407	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00390000003008	ENSGT00940000158479 #34
Vervet Monkey	MODERN SPECIES	7	RAB11FIP4 (ENSCSAG00000006613) #9	ENSCSAG00000006606	COPRS (ENSCSAG00000006603) #11	UTP6 (ENSCSAG00000006595) #12	SUZ12 (ENSCSAG00000006586) #13	CRLF3 (ENSCSAG00000006577) #14	ATAD5 (ENSCSAG00000006541) #15	TEFM (ENSCSAG00000006512) #16	ADAP2 (ENSCSAG00000006503) #17	RNF135 (ENSCSAG00000006495) #18	ENSCSAG00000000559	RHOT1 (ENSCSAG00000006465) #19	RHBDL3 (ENSCSAG00000006421) #20	ENSCSAG00000000558	C17orf75 (ENSCSAG00000006408) #21	ZNF207 (ENSCSAG00000006379) #22	PSMD11 (ENSCSAG00000006373) #23	ENSCSAG00000000557	CDK5R1 (ENSCSAG00000006370) #24	MYO1D (ENSCSAG00000006369) #25	TMEM98 (ENSCSAG00000006365) #26	SPACA3 (ENSCSAG00000006362) #27	ASIC2 (ENSCSAG00000006357) #28	CCL2 (ENSCSAG00000006354) #30	CCL11 (ENSCSAG00000006352) #31	CCL8 (ENSCSAG00000006350) #32	CCL13 (ENSCSAG00000006348) ##30	CCL1 (ENSCSAG00000006347) ##30	ENSCSAG00000006343	TMEM132E (ENSCSAG00000006340) #34	CCT6B (ENSCSAG00000006334) #35
Cercopithecinae_a	ANCESTRAL SPECIES	4	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Macaca	ANCESTRAL SPECIES	4	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00910000148586	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481.m #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT00940000154991.a.b #29	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Macaca_a	ANCESTRAL SPECIES	4	ENSGT00440000033742.a.b #9	ENSGT00910000148586	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.b.a.a.a.a.b.c.b	ENSGT01040000240755.A.b.a.a	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481.m #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Crab-eating macaque	MODERN SPECIES	7	ENSMFAG00000047784	ENSMFAG00000064943	ENSMFAG00000063616	COPRS (ENSMFAG00000030359) #11	UTP6 (ENSMFAG00000038842) #12	SUZ12 (ENSMFAG00000040091) #13	CRLF3 (ENSMFAG00000044393) #14	ATAD5 (ENSMFAG00000039082) #15	ENSMFAG00000063937	TEFM (ENSMFAG00000001938) #16	ENSMFAG00000059379 #17	RNF135 (ENSMFAG00000002510) #18	RHOT1 (ENSMFAG00000034504) #19	C17orf75 (ENSMFAG00000000431) #21	ENSMFAG00000048628 #21	ZNF207 (ENSMFAG00000001904) #22	RHBDL3 (ENSMFAG00000041020) #20	ENSMFAG00000057242	PSMD11 (ENSMFAG00000039747) #23	ENSMFAG00000048750 #24	MYO1D (ENSMFAG00000033021) #25	ENSMFAG00000055833	TMEM98 (ENSMFAG00000000693) #26	SPACA3 (ENSMFAG00000001727) #27	ASIC2 (ENSMFAG00000007668) #28	ENSMFAG00000059870	ENSMFAG00000053189	CCL2 (ENSMFAG00000053406) #30	CCL7 (ENSMFAG00000031903) ##30	CCL11 (ENSMFAG00000060137) #31	CCL8 (ENSMFAG00000041874) #32
Rhesus	MODERN SPECIES	7	ENSMMUG00000051206	ENSMMUG00000058961	COPRS (ENSMMUG00000057946) #11	UTP6 (ENSMMUG00000020403) #12	SUZ12 (ENSMMUG00000001116) #13	CRLF3 (ENSMMUG00000009069) #14	ATAD5 (ENSMMUG00000040177) #15	TEFM (ENSMMUG00000052827) #16	ADAP2 (ENSMMUG00000009077) #17	RNF135 (ENSMMUG00000007967) #18	RHOT1 (ENSMMUG00000018222) #19	RHBDL3 (ENSMMUG00000003158) #20	ENSMMUG00000054531	ENSMMUG00000058431	C16H17orf75 (ENSMMUG00000022379) #21	ZNF207 (ENSMMUG00000016875) #22	PSMD11 (ENSMMUG00000018962) #23	CDK5R1 (ENSMMUG00000009548) #24	MYO1D (ENSMMUG00000014689) #25	ENSMMUG00000059292	TMEM98 (ENSMMUG00000022356) #26	SPACA3 (ENSMMUG00000011411) #27	ASIC2 (ENSMMUG00000011413) #28	ENSMMUG00000002324	ENSMMUG00000062894	CCL2 (ENSMMUG00000000288) #30	CCL7 (ENSMMUG00000009782) ##30	CCL11 (ENSMMUG00000064793) #31	ENSMMUG00000058490	CCL8 (ENSMMUG00000009784) #32	CCL13 (ENSMMUG00000009785) ##30
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	116	RAB11FIP4 (ENSMNEG00000035170) #9	ENSMNEG00000018196	ENSMNEG00000000618	COPRS (ENSMNEG00000042239) #11	UTP6 (ENSMNEG00000039480) #12	SUZ12 (ENSMNEG00000030008) #13	ENSMNEG00000032660 #14	ATAD5 (ENSMNEG00000041128) #15	TEFM (ENSMNEG00000037622) #16	ENSMNEG00000010597	ADAP2 (ENSMNEG00000033418) #17	RNF135 (ENSMNEG00000037190) #18	RHOT1 (ENSMNEG00000043417) #19	RHBDL3 (ENSMNEG00000024854) #20	C17orf75 (ENSMNEG00000043612) #21	ENSMNEG00000041308 #22	ENSMNEG00000044062	PSMD11 (ENSMNEG00000032399) #23	CDK5R1 (ENSMNEG00000024350) #24	MYO1D (ENSMNEG00000043394) #25	TMEM98 (ENSMNEG00000041204) #26	SPACA3 (ENSMNEG00000033069) #27	ENSMNEG00000045019 #28	ENSMNEG00000026560	ENSMNEG00000030615	ENSMNEG00000012290	ENSMNEG00000006241 #29	CCL2 (ENSMNEG00000038921) #30	CCL7 (ENSMNEG00000036187) ##30	CCL11 (ENSMNEG00000028877) #31	CCL8 (ENSMNEG00000040396) #32
Pig-tailed macaque	MODERN SPECIES	409	DYTN (ENSMNEG00000038040)	FAM237A (ENSMNEG00000032870)	ADAM23 (ENSMNEG00000027959)	ENSMNEG00000028225	ZDBF2 (ENSMNEG00000031863)	ENSMNEG00000030060	NDUFS1 (ENSMNEG00000032822)	INO80D (ENSMNEG00000032459)	NRP2 (ENSMNEG00000039082)	ENSMNEG00000031020	PARD3B (ENSMNEG00000040103)	ICOS (ENSMNEG00000029598)	CTLA4 (ENSMNEG00000043834)	ENSMNEG00000030427	CD28 (ENSMNEG00000033642)	ENSMNEG00000036304 #22	RAPH1 (ENSMNEG00000030823)	ABI2 (ENSMNEG00000028519)	CYP20A1 (ENSMNEG00000045164)	NBEAL1 (ENSMNEG00000044041)	CARF (ENSMNEG00000033105)	ENSMNEG00000027411	ICA1L (ENSMNEG00000039428)	FAM117B (ENSMNEG00000033073)	BMPR2 (ENSMNEG00000032368)	NOP58 (ENSMNEG00000012760)	ENSMNEG00000041929	KIAA2012 (ENSMNEG00000030605)	ENSMNEG00000029108	FZD7 (ENSMNEG00000026832)	CDK15 (ENSMNEG00000043552)
Cercopithecinae_b	ANCESTRAL SPECIES	33	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Olive baboon	MODERN SPECIES	8	EVI2B (ENSPANG00000023110)	RAB11FIP4 (ENSPANG00000023111) #9	COPRS (ENSPANG00000023112) #11	UTP6 (ENSPANG00000023113) #12	SUZ12 (ENSPANG00000023097) #13	CRLF3 (ENSPANG00000023099) #14	ATAD5 (ENSPANG00000023096) #15	TEFM (ENSPANG00000023094) #16	ADAP2 (ENSPANG00000023090) #17	ENSPANG00000035965	RNF135 (ENSPANG00000023083) #18	RHOT1 (ENSPANG00000023084) #19	RHBDL3 (ENSPANG00000023087) #20	ENSPANG00000016500	C17orf75 (ENSPANG00000023088) #21	ZNF207 (ENSPANG00000023027) #22	PSMD11 (ENSPANG00000023029) #23	ENSPANG00000013718	CDK5R1 (ENSPANG00000016542) #24	MYO1D (ENSPANG00000023030) #25	TMEM98 (ENSPANG00000023031) #26	SPACA3 (ENSPANG00000023033) #27	ASIC2 (ENSPANG00000023034) #28	CCL2 (ENSPANG00000051132) #30	CCL7 (ENSPANG00000038856) ##30	CCL11 (ENSPANG00000023037) #31	CCL8 (ENSPANG00000044922) #32	CCL13 (ENSPANG00000023023) ##30	CCL1 (ENSPANG00000045394) ##30	TMEM132E (ENSPANG00000023021) #34	CCT6B (ENSPANG00000023018) #35
Cercopithecinae_d	ANCESTRAL SPECIES	98	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT01000000215472	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00390000006548.b.k.lb	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a #23	ENSGT00390000017697.a.m.b	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062.m #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01100000263482.F ##30	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Drill	DUPLICATION
Drill	MODERN SPECIES	1098							ATAD5 (ENSMLEG00000000078) #15	TEFM (ENSMLEG00000042473) #16	ADAP2 (ENSMLEG00000034044) #17	ENSMLEG00000017585	RNF135 (ENSMLEG00000036696) #18	RHOT1 (ENSMLEG00000035757) #19	RHBDL3 (ENSMLEG00000032731) #20	ENSMLEG00000029859	ENSMLEG00000020349	ENSMLEG00000018149 #22	C17orf75 (ENSMLEG00000041614) #21	PSMD11 (ENSMLEG00000034425) #23	ENSMLEG00000026829	CDK5R1 (ENSMLEG00000008724) #24	MYO1D (ENSMLEG00000033057) #25	TMEM98 (ENSMLEG00000043246) #26	SPACA3 (ENSMLEG00000020226) #27	ASIC2 (ENSMLEG00000027675) #28	ENSMLEG00000023408
Drill	MODERN SPECIES	1089									INO80D (ENSMLEG00000039669)	NRP2 (ENSMLEG00000035732)	ENSMLEG00000040986	PARD3B (ENSMLEG00000031270)	ICOS (ENSMLEG00000007807)	CTLA4 (ENSMLEG00000037639)	CD28 (ENSMLEG00000037603)	ENSMLEG00000004995 #22	RAPH1 (ENSMLEG00000033969)	ABI2 (ENSMLEG00000040577)	CYP20A1 (ENSMLEG00000034377)	NBEAL1 (ENSMLEG00000032708)
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	145	NF1 (ENSCATG00000040392) #8	RAB11FIP4 (ENSCATG00000035537) #9	ENSCATG00000017519	COPRS (ENSCATG00000034499) #11	UTP6 (ENSCATG00000034868) #12	SUZ12 (ENSCATG00000045058) #13	CRLF3 (ENSCATG00000033888) #14	ATAD5 (ENSCATG00000044730) #15	TEFM (ENSCATG00000044869) #16	ADAP2 (ENSCATG00000032362) #17	RNF135 (ENSCATG00000010095) #18	RHOT1 (ENSCATG00000036450) #19	ENSCATG00000038442	RHBDL3 (ENSCATG00000038200) #20	C17orf75 (ENSCATG00000016130) #21	ENSCATG00000031958 #22	PSMD11 (ENSCATG00000043638) #23	CDK5R1 (ENSCATG00000019620) #24	MYO1D (ENSCATG00000040334) #25	TMEM98 (ENSCATG00000039721) #26	SPACA3 (ENSCATG00000029915) #27	ASIC2 (ENSCATG00000035584) #28	CCL2 (ENSCATG00000043802) #30	CCL7 (ENSCATG00000038886) ##30	CCL11 (ENSCATG00000037948) #31	CCL8 (ENSCATG00000039815) #32	CCL13 (ENSCATG00000037447) ##30	CCL1 (ENSCATG00000043758) ##30	TMEM132E (ENSCATG00000035833) #34	ZNF830 (ENSCATG00000002410) #36	CCT6B (ENSCATG00000039984) #35
Sooty mangabey	MODERN SPECIES	570	FASTKD2 (ENSCATG00000038647)	MDH1B (ENSCATG00000035467)	DYTN (ENSCATG00000035275)	FAM237A (ENSCATG00000036777)	ADAM23 (ENSCATG00000043626)	ENSCATG00000037624	ZDBF2 (ENSCATG00000037091)	ENSCATG00000037736	NDUFS1 (ENSCATG00000037259)	INO80D (ENSCATG00000044654)	NRP2 (ENSCATG00000032051)	PARD3B (ENSCATG00000022284)	ICOS (ENSCATG00000043591)	CTLA4 (ENSCATG00000036235)	CD28 (ENSCATG00000043017)	ENSCATG00000043923 #22	RAPH1 (ENSCATG00000044686)	ABI2 (ENSCATG00000038300)	CYP20A1 (ENSCATG00000034415)	NBEAL1 (ENSCATG00000036478)	CARF (ENSCATG00000035061)	ENSCATG00000035496	ICA1L (ENSCATG00000036911)	FAM117B (ENSCATG00000033570)	ENSCATG00000033526	BMPR2 (ENSCATG00000033192)	NOP58 (ENSCATG00000037684)	ENSCATG00000035585	ENSCATG00000033452	KIAA2012 (ENSCATG00000034304)	FZD7 (ENSCATG00000004913)
Platyrrhini	ANCESTRAL SPECIES	1	ENSGT00940000160802	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.i #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Mas night monkey	MODERN SPECIES	416	ENSANAG00000023634	ENSANAG00000021368 #11	UTP6 (ENSANAG00000034603) #12	ENSANAG00000019084	ENSANAG00000035949	SUZ12 (ENSANAG00000025936) #13	CRLF3 (ENSANAG00000026772) #14	ATAD5 (ENSANAG00000038293) #15	ENSANAG00000030251	TEFM (ENSANAG00000037987) #16	ADAP2 (ENSANAG00000020704) #17	RNF135 (ENSANAG00000020022) #18	ENSANAG00000029584 #19	RHBDL3 (ENSANAG00000027744) #20	C17orf75 (ENSANAG00000032338) #21	ZNF207 (ENSANAG00000033773) #22	PSMD11 (ENSANAG00000021703) #23	CDK5R1 (ENSANAG00000012728) #24	MYO1D (ENSANAG00000036261) #25	ENSANAG00000037868	TMEM98 (ENSANAG00000038126) #26	SPACA3 (ENSANAG00000035068) #27	ASIC2 (ENSANAG00000001281) #28	CCL2 (ENSANAG00000037893) #30	CCL7 (ENSANAG00000022972) ##30	CCL11 (ENSANAG00000025265) #31	CCL8 (ENSANAG00000023316) #32	ENSANAG00000034079	CCL1 (ENSANAG00000023858) ##30	TMEM132E (ENSANAG00000029169) #34	ENSANAG00000006396
Cebidae	ANCESTRAL SPECIES	10	ENSGT00390000009142	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.b.a #12	ENSGT00390000016493.b.b #12	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.i #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01100000263482.A.a.a.d.b ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35	ENSGT00390000012151 #36
Marmoset	MODERN SPECIES	17	NF1 (ENSCJAG00000013924) #8	RAB11FIP4 (ENSCJAG00000014099) #9	ENSCJAG00000014106	COPRS (ENSCJAG00000014110) #11	UTP6 (ENSCJAG00000014115) #12	SUZ12 (ENSCJAG00000014133) #13	ENSCJAG00000085031	CRLF3 (ENSCJAG00000039568) #14	ENSCJAG00000078212	ATAD5 (ENSCJAG00000014179) #15	TEFM (ENSCJAG00000014201) #16	RNF135 (ENSCJAG00000014210) #18	RHOT1 (ENSCJAG00000014248) #19	RHBDL3 (ENSCJAG00000014342) #20	C17orf75 (ENSCJAG00000014362) #21	ZNF207 (ENSCJAG00000014376) #22	PSMD11 (ENSCJAG00000014450) #23	CDK5R1 (ENSCJAG00000047608) #24	MYO1D (ENSCJAG00000014516) #25	TMEM98 (ENSCJAG00000014550) #26	SPACA3 (ENSCJAG00000014561) #27	ENSCJAG00000051816 #28	ASIC2 (ENSCJAG00000014568) #28	CCL7 (ENSCJAG00000062725) ##30	CCL2 (ENSCJAG00000057655) #30	CCL8 (ENSCJAG00000038352) #32	CCL13 (ENSCJAG00000042890) ##30	ENSCJAG00000076401 #33	TMEM132E (ENSCJAG00000014632) #34	CCT6B (ENSCJAG00000014646) #35	ZNF830 (ENSCJAG00000058086) #36
Cebidae_a	ANCESTRAL SPECIES	1	ENSGT00940000160802	ENSGT00390000003004 #7	ENSGT00440000033742.a.b #9	ENSGT00390000007384 #11	ENSGT00390000016493.b.a #12	ENSGT00390000008040.t	ENSGT00390000012364 #13	ENSGT00940000153469.a.b #14	ENSGT00940000153469.a.a #15	ENSGT00390000010581 #16	ENSGT00940000156498 #17	ENSGT00830000128449 #18	ENSGT00940000155641 #19	ENSGT00940000158838 #20	ENSGT00390000005481 #21	ENSGT00730000111057 #22	ENSGT00530000063301.a.a.i #23	ENSGT00390000008812.b.b #24	ENSGT00940000157411 #25	ENSGT00390000012062 #26	ENSGT00940000161810 #27	ENSGT00940000154991.b #28	ENSGT01100000263482.A.a.a.d.a.a.a.b #30	ENSGT01100000263482.A.a.a.d.a.a.a.a ##30	ENSGT01100000263482.A.a.a.d.a.a.b #31	ENSGT01100000263482.A.a.a.d.a.b #32	ENSGT01060000248892	ENSGT01100000263482.F ##30	ENSGT01030000234760 #33	ENSGT00940000158479 #34	ENSGT00940000156339 #35
Capuchin	MODERN SPECIES	140	OMG (ENSCCAG00000017282)	EVI2A (ENSCCAG00000028523) #7	RAB11FIP4 (ENSCCAG00000027489) #9	COPRS (ENSCCAG00000010505) #11	ENSCCAG00000033318 #12	ENSCCAG00000032928	SUZ12 (ENSCCAG00000037725) #13	CRLF3 (ENSCCAG00000020821) #14	ATAD5 (ENSCCAG00000023275) #15	TEFM (ENSCCAG00000031597) #16	ADAP2 (ENSCCAG00000019010) #17	RNF135 (ENSCCAG00000034866) #18	RHOT1 (ENSCCAG00000024157) #19	RHBDL3 (ENSCCAG00000028200) #20	C17orf75 (ENSCCAG00000031556) #21	ZNF207 (ENSCCAG00000030971) #22	ENSCCAG00000030507 #23	CDK5R1 (ENSCCAG00000001118) #24	MYO1D (ENSCCAG00000035418) #25	TMEM98 (ENSCCAG00000025493) #26	SPACA3 (ENSCCAG00000036668) #27	ASIC2 (ENSCCAG00000037205) #28
Bolivian squirrel monkey	DUPLICATION
Bolivian squirrel monkey	MODERN SPECIES	95										TEFM (ENSSBOG00000019565) #16	ADAP2 (ENSSBOG00000030389) #17	RNF135 (ENSSBOG00000030138) #18	RHOT1 (ENSSBOG00000031085) #19	RHBDL3 (ENSSBOG00000028127) #20	C17orf75 (ENSSBOG00000023876) #21	ZNF207 (ENSSBOG00000026038) #22	ENSSBOG00000035683	PSMD11 (ENSSBOG00000027961) #23	ENSSBOG00000016899	CDK5R1 (ENSSBOG00000021952) #24	MYO1D (ENSSBOG00000005563) #25	TMEM98 (ENSSBOG00000029612) #26	SPACA3 (ENSSBOG00000031184) #27	ASIC2 (ENSSBOG00000032279) #28	CCL2 (ENSSBOG00000035114) #30	CCL7 (ENSSBOG00000033930) ##30	CCL11 (ENSSBOG00000028311) #31	CCL8 (ENSSBOG00000018317) #32	ENSSBOG00000032338	CCL1 (ENSSBOG00000014955) ##30	TMEM132E (ENSSBOG00000029140) #34
Bolivian squirrel monkey	MODERN SPECIES	56	MDH1B (ENSSBOG00000029880)	DYTN (ENSSBOG00000026100)	FAM237A (ENSSBOG00000033809)	ADAM23 (ENSSBOG00000001918)	ZDBF2 (ENSSBOG00000011111)	ENSSBOG00000036258	NDUFS1 (ENSSBOG00000028426)	INO80D (ENSSBOG00000020878)	ENSSBOG00000034794	NRP2 (ENSSBOG00000035290)	PARD3B (ENSSBOG00000029267)	ICOS (ENSSBOG00000000744)	CTLA4 (ENSSBOG00000034817)	ENSSBOG00000030167	CD28 (ENSSBOG00000032327)	ENSSBOG00000030839 #22	RAPH1 (ENSSBOG00000036069)	ABI2 (ENSSBOG00000031443)	CYP20A1 (ENSSBOG00000025384)	ENSSBOG00000030482	NBEAL1 (ENSSBOG00000032563)	CARF (ENSSBOG00000032523)	WDR12 (ENSSBOG00000015132)	ICA1L (ENSSBOG00000032973)	ENSSBOG00000016073	BMPR2 (ENSSBOG00000025318)	ENSSBOG00000029881	NOP58 (ENSSBOG00000020494)	ENSSBOG00000030624	KIAA2012 (ENSSBOG00000034494)	FZD7 (ENSSBOG00000013896)