Rodentia_A	ANCESTRAL SPECIES	8												ENSGT00940000156603 #18	ENSGT00940000157474 #19	ENSGT00550000075035 #20	ENSGT00530000063168.b #21	ENSGT00940000159781 #22	ENSGT00390000001024 #26	ENSGT00940000160069 #25	ENSGT00940000155172 #27	ENSGT00390000018879 #28	ENSGT00390000012017 #29	ENSGT00940000157846 #31	ENSGT00390000018436.a.b #32	ENSGT00950000183181.A.a #33	ENSGT00940000162787	ENSGT00940000162166 #34	ENSGT00940000155237 #35	ENSGT00530000063359.A #37	ENSGT00940000162752	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a
Sciuridae	ANCESTRAL SPECIES	1												ENSGT00940000156603 #18	ENSGT00940000157474 #19	ENSGT00550000075035.r #20	ENSGT00530000063168.b #21	ENSGT00940000159781 #22	ENSGT00390000001024 #26	ENSGT00940000160069 #25	ENSGT00940000155172 #27	ENSGT00390000018879 #28	ENSGT00390000012017 #29	ENSGT00940000157846 #31	ENSGT00390000018436.a.b #32	ENSGT00950000183181.A.a #33	ENSGT00940000162752	ENSGT00530000063359.A #37	ENSGT00940000155237 #35	ENSGT00940000162166 #34	ENSGT00940000162787	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a
Eurasian red squirrel	MODERN SPECIES	16											ENSSVLG00005009137 #17	PDCD2 (ENSSVLG00005009277) #18	ENSSVLG00005009367 #19	ENSSVLG00005009399 #20	ENSSVLG00005009441 #21	DLL1 (ENSSVLG00005009464) #22	ENSSVLG00005009518 #23	ENSSVLG00005009783 #24	DYNLT2 (ENSSVLG00005009825) #25	ENSSVLG00005009866 #26	PHF10 (ENSSVLG00005009963) #27	ENSSVLG00005010029 #28	WDR27 (ENSSVLG00005010073) #29	ENSSVLG00005010185 #30	THBS2 (ENSSVLG00005008075) #31	SMOC2 (ENSSVLG00005008335) #32	DACT2 (ENSSVLG00005008476) #33	KIF25 (ENSSVLG00005008516) #34	AFDN (ENSSVLG00005008595) #35	ENSSVLG00005008872 #36	UNC93A (ENSSVLG00005008938) #37
Marmotini	ANCESTRAL SPECIES	11												ENSGT00940000156603 #18	ENSGT00940000157474 #19	ENSGT00550000075035.r #20	ENSGT00530000063168.b #21	ENSGT00940000159781 #22	ENSGT00390000001024 #26	ENSGT00940000160069 #25	ENSGT00940000155172 #27	ENSGT00390000018879 #28	ENSGT00390000012017 #29	ENSGT00940000157846 #31	ENSGT00390000018436.a.b #32	ENSGT00950000183181.A.a #33	ENSGT00530000063359.A #37	ENSGT00940000155237 #35	ENSGT00940000162166 #34	ENSGT00940000162787	ENSGT00530000063927.a.a	ENSGT00990000203619.A.b.b.a	ENSGT01030000234667.b
Alpin marmot	MODERN SPECIES	55												PDCD2 (ENSMMMG00000007705) #18	TBP (ENSMMMG00000007774) #19	ENSMMMG00000007812 #20	FAM120B (ENSMMMG00000007838) #21	DLL1 (ENSMMMG00000007861) #22	ERMARD (ENSMMMG00000007893) #26	PHF10 (ENSMMMG00000007949) #27	C6orf120 (ENSMMMG00000007952) #28	WDR27 (ENSMMMG00000007956) #29	THBS2 (ENSMMMG00000008020) #31	ENSMMMG00000008062	SMOC2 (ENSMMMG00000008070) #32	DACT2 (ENSMMMG00000008118) #33	UNC93A (ENSMMMG00000008150) #37	AFDN (ENSMMMG00000008187) #35	KIF25 (ENSMMMG00000008818) #34	FRMD1 (ENSMMMG00000008833)	ENSMMMG00000008905	CCR6 (ENSMMMG00000008925)	ENSMMMG00000008953
Marmotini_b	ANCESTRAL SPECIES	292												ENSGT00940000156603 #18	ENSGT00940000157474 #19	ENSGT00550000075035.r #20	ENSGT00530000063168.b #21	ENSGT00940000159781 #22
Arctic ground squirrel	MODERN SPECIES	791												ENSUPAG00010006653 #18	TBP (ENSUPAG00010006675) #19	PSMB1 (ENSUPAG00010006708) #20	FAM120B (ENSUPAG00010006732) #21	DLL1 (ENSUPAG00010006815) #22
Squirrel	MODERN SPECIES	624												PDCD2 (ENSSTOG00000022768) #18	TBP (ENSSTOG00000008402) #19	PSMB1 (ENSSTOG00000010581) #20	FAM120B (ENSSTOG00000013523) #21	DLL1 (ENSSTOG00000026359) #22
Hystricomorpha	ANCESTRAL SPECIES	66												ENSGT00940000156603 #18	ENSGT00940000157474 #19	ENSGT00550000075035 #20	ENSGT00530000063168.b #21	ENSGT00940000159781 #22	ENSGT00390000001024 #26	ENSGT00940000160069 #25	ENSGT00940000155172 #27	ENSGT00390000018879 #28	ENSGT00390000012017 #29	ENSGT00940000157846 #31	ENSGT00390000018436.a.b #32	ENSGT00950000183181.A.a #33	ENSGT00940000162318	ENSGT00940000158644	ENSGT00940000159467	ENSGT00730000111274	ENSGT01070000253744.a.a.b.b	ENSGT00940000157889	ENSGT00940000161065
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000049952	ENSHGLG00000038051	ENSHGLG00000038358	ENSHGLG00000020909	ENSHGLG00000019890	ENSHGLG00000041629	ENSHGLG00000050986	ENSHGLG00000044718	ENSHGLG00000001446	ENSHGLG00000041206	ENSHGLG00000004142 #18	TBP (ENSHGLG00000004038) #19	PSMB1 (ENSHGLG00000034020) #20	ENSHGLG00000032630	FAM120B (ENSHGLG00000003831) #21	DLL1 (ENSHGLG00000002650) #22	ENSHGLG00000034058	ERMARD (ENSHGLG00000002582) #26	DYNLT2 (ENSHGLG00000002545) #25	ENSHGLG00000002489 #27	C6orf120 (ENSHGLG00000002449) #28	ENSHGLG00000034651	ENSHGLG00000040894	THBS2 (ENSHGLG00000002362) #31	SMOC2 (ENSHGLG00000044254) #32	ENSHGLG00000002257 #33	ENSHGLG00000036448	ENSHGLG00000049425	ENSHGLG00000002118	ENSHGLG00000020005	BMP5 (ENSHGLG00000048234)
Hystricomorpha_a	ANCESTRAL SPECIES	75	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b	ENSGT00390000006777.a	ENSGT00390000014256	ENSGT00940000158807	ENSGT00940000162778	ENSGT00550000074943	ENSGT00940000156603 #18	ENSGT00940000157474 #19	ENSGT00550000075035 #20	ENSGT00530000063168.b #21	ENSGT00940000159781 #22	ENSGT00390000001024 #26	ENSGT00940000160069 #25	ENSGT00940000155172 #27	ENSGT00390000018879 #28	ENSGT00390000012017 #29	ENSGT00940000157846 #31	ENSGT00390000018436.a.b #32	ENSGT00950000183181.A.a #33
Guinea pig	MODERN SPECIES	58			ENSCPOG00000008406	LRRC1 (ENSCPOG00000003406)	KLHL31 (ENSCPOG00000005748)	GCLC (ENSCPOG00000008314)	ELOVL5 (ENSCPOG00000004234)	GCM1 (ENSCPOG00000037784)	FBXO9 (ENSCPOG00000001413)	CILK1 (ENSCPOG00000000735)	GSTA4 (ENSCPOG00000022871)	ENSCPOG00000003842	TBP (ENSCPOG00000039966) #19	PSMB1 (ENSCPOG00000001187) #20	FAM120B (ENSCPOG00000032998) #21	DLL1 (ENSCPOG00000024133) #22	ERMARD (ENSCPOG00000011581) #26	DYNLT2 (ENSCPOG00000037938) #25	PHF10 (ENSCPOG00000022409) #27	C6orf120 (ENSCPOG00000027368) #28	WDR27 (ENSCPOG00000011113) #29	THBS2 (ENSCPOG00000027034) #31	SMOC2 (ENSCPOG00000008023) #32	ENSCPOG00000004731 #33	RWDD1 (ENSCPOG00000038110)	CALHM4 (ENSCPOG00000012855)	TRAPPC3L (ENSCPOG00000012848)	CALHM5 (ENSCPOG00000036158)	DSE (ENSCPOG00000003402)	ENSCPOG00000035087	TSPYL1 (ENSCPOG00000022929)
Hystricomorpha_b	ANCESTRAL SPECIES	41	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b	ENSGT00390000006777.a	ENSGT00390000014256	ENSGT00940000158807	ENSGT00940000161750	ENSGT00550000074943	ENSGT00940000156603 #18	ENSGT00940000157474 #19	ENSGT00550000075035 #20	ENSGT00530000063168.b #21	ENSGT00940000159781 #22	ENSGT00390000001024 #26	ENSGT00940000160069 #25	ENSGT00940000155172 #27	ENSGT00390000018879 #28	ENSGT00390000012017 #29	ENSGT00940000157846 #31	ENSGT00390000018436.a.b #32	ENSGT00950000183181.A.a #33	ENSGT00940000154526.h.i.a.q	ENSGT00940000154526.h.i.a.r	ENSGT00940000158206	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000159860	ENSGT01050000244824.B
Degu	MODERN SPECIES	246	ENSODEG00000000745	ENSODEG00000000730	ENSODEG00000000707	GCM1 (ENSODEG00000000688)	FBXO9 (ENSODEG00000000649)	CILK1 (ENSODEG00000000575)	GSTA4 (ENSODEG00000000531)	ENSODEG00000018555	ENSODEG00000000503	ENSODEG00000000462	PDCD2 (ENSODEG00000000428) #18	TBP (ENSODEG00000000410) #19	PSMB1 (ENSODEG00000000390) #20	ENSODEG00000000376	FAM120B (ENSODEG00000000356) #21	DLL1 (ENSODEG00000000295) #22
Long-tailed chinchilla	MODERN SPECIES	118	TINAG (ENSCLAG00000012331)	ENSCLAG00000014553	LRRC1 (ENSCLAG00000012395)	KLHL31 (ENSCLAG00000009090)	GCLC (ENSCLAG00000008717)	ELOVL5 (ENSCLAG00000010843)	GCM1 (ENSCLAG00000010389)	FBXO9 (ENSCLAG00000008452)	CILK1 (ENSCLAG00000011418)	ENSCLAG00000012277	ENSCLAG00000009706	PDCD2 (ENSCLAG00000009531) #18	TBP (ENSCLAG00000010054) #19	PSMB1 (ENSCLAG00000010944) #20	FAM120B (ENSCLAG00000014467) #21	DLL1 (ENSCLAG00000012564) #22	ERMARD (ENSCLAG00000010666) #26	ENSCLAG00000011269	PHF10 (ENSCLAG00000012283) #27	C6orf120 (ENSCLAG00000013630) #28	WDR27 (ENSCLAG00000008515) #29	THBS2 (ENSCLAG00000015165) #31	SMOC2 (ENSCLAG00000014318) #32	ENSCLAG00000015281 #33	ENSCLAG00000015569	ENSCLAG00000011232	ENSCLAG00000011460	TMEM14A (ENSCLAG00000012364)	TRAM2 (ENSCLAG00000012768)	EFHC1 (ENSCLAG00000017038)	PAQR8 (ENSCLAG00000017940)