Chordata	ANCESTRAL SPECIES																	ENSGT00390000002752 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00390000002752 #22
Gnathostomata	ANCESTRAL SPECIES	69							ENSGT00390000004836	ENSGT00940000159664	ENSGT00940000164958	ENSGT00940000155556.c	ENSGT00940000157100	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b	ENSGT00940000158127	ENSGT00940000159441	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268	ENSGT00940000161336	ENSGT00390000004323.b	ENSGT00390000014667	ENSGT00940000168279	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00730000111191	ENSGT00940000154076.C.d	ENSGT00940000156854	ENSGT00940000154322.C	ENSGT00940000176040	ENSGT00940000155709	ENSGT00940000157510	ENSGT00390000005730.b
Euteleostomi	ANCESTRAL SPECIES	77						ENSGT00390000004836	ENSGT00960000186809	ENSGT00940000159664	ENSGT00940000164958	ENSGT00940000155556.c	ENSGT00940000157100	ENSGT01050000244814.a.b	ENSGT01080000257338.A.b	ENSGT00940000158127	ENSGT00940000159441	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b	ENSGT00940000155537	ENSGT00940000157972	ENSGT00940000156268.a.a	ENSGT00940000161336	ENSGT00390000004323.b	ENSGT00390000014667	ENSGT00940000154744	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00730000111191	ENSGT00940000154076.C.d	ENSGT00940000159717	ENSGT00940000156854
Sarcopterygii	ANCESTRAL SPECIES	165												ENSGT00940000157100	ENSGT01050000244814.a.b	ENSGT01080000257338.A.b	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000162543	ENSGT00390000004323.b	ENSGT00390000014667	ENSGT00940000154744	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00730000111191	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854	ENSGT00940000154322.C	ENSGT00940000162720.b.a	ENSGT00940000155709	ENSGT00940000157510	ENSGT00940000161207	ENSGT00390000005730.a.a
Tetrapoda	ANCESTRAL SPECIES																	ENSGT00390000002752 #22
Amniota	ANCESTRAL SPECIES	29	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01020000231542	ENSGT00390000002752 #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000157670	ENSGT00940000175256	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	31	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000167885	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000175256	ENSGT00940000158478	ENSGT00940000157705.l
Archelosauria	ANCESTRAL SPECIES	31	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00990000212165	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l
Archosauria	ANCESTRAL SPECIES	26	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00990000212165	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b
Aves	ANCESTRAL SPECIES	32	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000176045	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29
Neognathae	ANCESTRAL SPECIES	29	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36
Galloanserae	ANCESTRAL SPECIES	27	ENSGT00940000156445 #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36	ENSGT01020000230389.a.a.a #37
Anatidae	ANCESTRAL SPECIES	30	ENSGT00940000156445 #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b.g #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36
Duck	MODERN SPECIES	16				ALG9 (ENSAPLG00000004285) #8	FDXACB1 (ENSAPLG00000004681) #9	CFAP68 (ENSAPLG00000004708) #10	CRYAB (ENSAPLG00000026251) #11	HSPB2 (ENSAPLG00000004967) #12	C11orf52 (ENSAPLG00000017659) #13	ENSAPLG00000005002 #14	DLAT (ENSAPLG00000005443) #15	ENSAPLG00000005799 #16	ENSAPLG00000023706	IL18 (ENSAPLG00000005942) #19	BCO2 (ENSAPLG00000006142) #21	PTS (ENSAPLG00000006913) #22	ENSAPLG00000024882	ENSAPLG00000028766 #23	NCAM1 (ENSAPLG00000006972) #24	ENSAPLG00000008471 #25	ANKK1 (ENSAPLG00000023849) #26	DRD2 (ENSAPLG00000009051) #27	TMPRSS5 (ENSAPLG00000019752) #28	ZW10 (ENSAPLG00000010173) #29	ENSAPLG00000010562 #30	CD3E (ENSAPLG00000010696) #31	MPZL2 (ENSAPLG00000010883) #32	ENSAPLG00000011162 #34	SCN2B (ENSAPLG00000011335) #35	TMPRSS4 (ENSAPLG00000011505) #37	IL10RA (ENSAPLG00000012033)
Pink-footed goose	MODERN SPECIES	174	SIK2 (ENSABRG00000004135) #7	ALG9 (ENSABRG00000003956) #8	FDXACB1 (ENSABRG00000003945) #9	CFAP68 (ENSABRG00000003933) #10	CRYAB (ENSABRG00000003920) #11	HSPB2 (ENSABRG00000003902) #12	C11orf52 (ENSABRG00000003880) #13	DIXDC1 (ENSABRG00000002881) #14	DLAT (ENSABRG00000002694) #15	PIH1D2 (ENSABRG00000002648) #16	ENSABRG00000002578 #17	SDHD (ENSABRG00000002562) #18	IL18 (ENSABRG00000002391) #19	TEX12 (ENSABRG00000002365) #20	BCO2 (ENSABRG00000001835) #21	PTS (ENSABRG00000001763) #22	ENSABRG00000001680	ENSABRG00000001642 #23	NCAM1 (ENSABRG00000001575) #24	ENSABRG00000001546	ANKK1 (ENSABRG00000001517) #26	DRD2 (ENSABRG00000001024) #27
Phasianidae	ANCESTRAL SPECIES	27		ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000155231.b	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799	ENSGT00730000110915.a	ENSGT01050000244848.B.a.a	ENSGT00900000141067	ENSGT00940000166624	ENSGT00950000182952.A.a
Japanese quail	MODERN SPECIES	16			ALG9 (ENSCJPG00005013912) #8	FDXACB1 (ENSCJPG00005013911) #9	CFAP68 (ENSCJPG00005013910) #10	CRYAB (ENSCJPG00005013909) #11	HSPB2 (ENSCJPG00005013908) #12	C11orf52 (ENSCJPG00005013907) #13	DLAT (ENSCJPG00005013906) #15	PIH1D2 (ENSCJPG00005013905) #16	ENSCJPG00005013904	SDHD (ENSCJPG00005013903) #18	IL18 (ENSCJPG00005013901) #19	ENSCJPG00005013900	BCO2 (ENSCJPG00005013899) #21	PTS (ENSCJPG00005013898) #22	NCAM1 (ENSCJPG00005012933) #24	ENSCJPG00005012930 #25	ANKK1 (ENSCJPG00005012929) #26	DRD2 (ENSCJPG00005012923) #27	PHLDB1 (ENSCJPG00005012481)	HYOU1 (ENSCJPG00005011924)	SLC37A4 (ENSCJPG00005011922)	TRAPPC4 (ENSCJPG00005011921)	RPS25 (ENSCJPG00005011919)	CENATAC (ENSCJPG00005011917)	BCL9L (ENSCJPG00005011916)	CXCR5 (ENSCJPG00005011914)	ENSCJPG00005011752	BTG4 (ENSCJPG00005011750)	IFT46 (ENSCJPG00005011737)
Phasianidae_b	ANCESTRAL SPECIES	26	ENSGT00940000162662.t	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000155231.b	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799	ENSGT00730000110915.a	ENSGT01050000244848.B.a.a	ENSGT00900000141067	ENSGT00940000166624	ENSGT00950000182952.A.a
Turkey	MODERN SPECIES	18	ENSMGAG00000004772	ALG9 (ENSMGAG00000004749) #8	FDXACB1 (ENSMGAG00000020294) #9	CFAP68 (ENSMGAG00000018859) #10	CRYAB (ENSMGAG00000004705) #11	HSPB2 (ENSMGAG00000004725) #12	ENSMGAG00000022505	DIXDC1 (ENSMGAG00000004662) #14	DLAT (ENSMGAG00000004635) #15	PIH1D2 (ENSMGAG00000004628) #16	ENSMGAG00000004621 #17	SDHD (ENSMGAG00000022433) #18	IL18 (ENSMGAG00000004590) #19	TEX12 (ENSMGAG00000021844) #20	BCO2 (ENSMGAG00000004539) #21	PTS (ENSMGAG00000021910) #22	NCAM1 (ENSMGAG00000004316) #24	ENSMGAG00000004280 #25	ANKK1 (ENSMGAG00000004269) #26	DRD2 (ENSMGAG00000004223) #27	ENSMGAG00000022032	ENSMGAG00000004501	SLC37A4 (ENSMGAG00000004192)	TRAPPC4 (ENSMGAG00000021935)	RPS25 (ENSMGAG00000004167)	BCL9L (ENSMGAG00000004151)	CXCR5 (ENSMGAG00000015685)	DDX6 (ENSMGAG00000004123)	ENSMGAG00000004117	ENSMGAG00000003798	ENSMGAG00000004107
Chicken	MODERN SPECIES	16	ENSGALG00010023013	ALG9 (ENSGALG00010022986) #8	FDXACB1 (ENSGALG00010025228) #9	CFAP68 (ENSGALG00010025223) #10	HSPB2 (ENSGALG00010025210) #12	CRYAB (ENSGALG00010025192) #11	C11ORF52 (ENSGALG00010025164) #13	DIXDC1 (ENSGALG00010026481) #14	DLAT (ENSGALG00010025156) #15	PIH1D2 (ENSGALG00010025144) #16	ENSGALG00010025126 #17	SDHD (ENSGALG00010025113) #18	IL18 (ENSGALG00010025073) #19	TEX12 (ENSGALG00010025063) #20	BCO2 (ENSGALG00010025042) #21	PTS (ENSGALG00010024986) #22	NCAM1 (ENSGALG00010024950) #24	ENSGALG00010024938 #25	ANKK1 (ENSGALG00010024932) #26	DRD2 (ENSGALG00010024922) #27	PHLDB1 (ENSGALG00010024907)	HYOU1 (ENSGALG00010024873)	TRAPPC4 (ENSGALG00010024866)	SLC37A4 (ENSGALG00010024857)	CENATAC (ENSGALG00010024849)	BCL9L (ENSGALG00010024843)	CXCR5 (ENSGALG00010024801)	DDX6 (ENSGALG00010024794)	ENSGALG00010022757	BTG4 (ENSGALG00010022753)	ENSGALG00010022748
Neognathae_b	ANCESTRAL SPECIES	29	ENSGT00940000156445 #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36
Neognathae_c	ANCESTRAL SPECIES	32	ENSGT00390000001844.a.b	ENSGT00940000156445 #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36	ENSGT00940000164655	ENSGT00510000048847
Golden eagle	MODERN SPECIES	24	LAYN (ENSACCG00020005587)	SIK2 (ENSACCG00020005536) #7	ALG9 (ENSACCG00020005480) #8	FDXACB1 (ENSACCG00020005460) #9	ENSACCG00020005438	CRYAB (ENSACCG00020005425) #11	HSPB2 (ENSACCG00020005414) #12	C11orf52 (ENSACCG00020005408) #13	DIXDC1 (ENSACCG00020005358) #14	DLAT (ENSACCG00020005324) #15	PIH1D2 (ENSACCG00020005307) #16	ENSACCG00020005296 #17	SDHD (ENSACCG00020005285) #18	IL18 (ENSACCG00020005278) #19	BCO2 (ENSACCG00020005266) #21	PTS (ENSACCG00020005254) #22	NCAM1 (ENSACCG00020005219) #24	ENSACCG00020005169 #25	ANKK1 (ENSACCG00020005139) #26	DRD2 (ENSACCG00020005098) #27	TMPRSS5 (ENSACCG00020005043) #28	ZW10 (ENSACCG00020005020) #29	ENSACCG00020005006 #30	CD3E (ENSACCG00020004996) #31	MPZL2 (ENSACCG00020004975) #32	ENSACCG00020004934 #34	MPZL3 (ENSACCG00020004916) #33	ENSACCG00020004895	SCN2B (ENSACCG00020004875) #35	ENSACCG00020004847	ENSACCG00020004817
Kakapo	MODERN SPECIES	7	SIK2 (ENSSHBG00005010655) #7	ALG9 (ENSSHBG00005010613) #8	FDXACB1 (ENSSHBG00005000697) #9	ENSSHBG00005019796	CRYAB (ENSSHBG00005019792) #11	HSPB2 (ENSSHBG00005019790) #12	C11orf52 (ENSSHBG00005019786) #13	DIXDC1 (ENSSHBG00005019774) #14	DLAT (ENSSHBG00005019757) #15	PIH1D2 (ENSSHBG00005019747) #16	ENSSHBG00005019744 #17	SDHD (ENSSHBG00005019736) #18	IL18 (ENSSHBG00005019726) #19	TEX12 (ENSSHBG00005019723) #20	BCO2 (ENSSHBG00005019705) #21	PTS (ENSSHBG00005019697) #22	NCAM1 (ENSSHBG00005019689) #24	ENSSHBG00005019684 #25	ANKK1 (ENSSHBG00005019672) #26	DRD2 (ENSSHBG00005019667) #27	ENSSHBG00005019660 #28	ZW10 (ENSSHBG00005019400) #29	ENSSHBG00005019345 #30	CD3E (ENSSHBG00005019336) #31	MPZL2 (ENSSHBG00005019331) #32	MPZL3 (ENSSHBG00005019328) #33	ENSSHBG00005019318 #34	SCN2B (ENSSHBG00005019313) #35	SCN4B (ENSSHBG00005019311) #36	ENSSHBG00005019304	IL10RA (ENSSHBG00005019287)
Passeriformes	ANCESTRAL SPECIES	28	ENSGT00390000001844.a.b	ENSGT00940000156445 #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36
Passeriformes_d	ANCESTRAL SPECIES	29	ENSGT00950000182952.A.a	ENSGT00390000001844.a.b	ENSGT00940000156445.l #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36
Passeriformes_g	ANCESTRAL SPECIES	36	ENSGT00390000001844.a.b	ENSGT00940000156445.l #7	ENSGT00940000156445.k #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00960000189801	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36	ENSGT00940000155207.a.a	ENSGT00510000048847
Passeroidea	ANCESTRAL SPECIES	37	ENSGT00940000153695.A	ENSGT00950000182952.A.a	ENSGT00390000001844.a.b	ENSGT00940000156445.l #7	ENSGT00950000183090.D #8	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00940000166399 #17	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00960000189801	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00390000016427 #29	ENSGT00940000153312.A #30	ENSGT00940000153312.B #31	ENSGT01030000234556.a.a.a #32	ENSGT01030000234556.a.a.b #33	ENSGT00440000034341 #34	ENSGT01030000234556.b.a #35	ENSGT01030000234556.b.b.c #36	ENSGT00940000164655	ENSGT00510000048847
Common canary	MODERN SPECIES	55	ENSSCAG00000007821	BTG4 (ENSSCAG00000007812)	LAYN (ENSSCAG00000007808)	ENSSCAG00000007804 #7	ALG9 (ENSSCAG00000007765) #8	CRYAB (ENSSCAG00000007748) #11	HSPB2 (ENSSCAG00000007745) #12	C11orf52 (ENSSCAG00000007743) #13	DIXDC1 (ENSSCAG00000007740) #14	DLAT (ENSSCAG00000007726) #15	ENSSCAG00000007711 #17	SDHD (ENSSCAG00000007707) #18	ENSSCAG00000007703 #19	ENSSCAG00000007697	BCO2 (ENSSCAG00000007688) #21	PTS (ENSSCAG00000007682) #22	NCAM1 (ENSSCAG00000006198) #24	ENSSCAG00000005843	ENSSCAG00000005836 #25	ANKK1 (ENSSCAG00000005831) #26	DRD2 (ENSSCAG00000005757) #27	ZW10 (ENSSCAG00000005735) #29	ENSSCAG00000005729 #30	CD3E (ENSSCAG00000005723) #31	MPZL2 (ENSSCAG00000005720) #32	MPZL3 (ENSSCAG00000005716) #33	SCN2B (ENSSCAG00000005705) #35	SCN4B (ENSSCAG00000005704) #36	ENSSCAG00000005698	ENSSCAG00000005692	TMPRSS13 (ENSSCAG00000005684)
Zebra finch	MODERN SPECIES	17	ENSTGUG00000028026	BTG4 (ENSTGUG00000000348)	LAYN (ENSTGUG00000000344)	SIK2 (ENSTGUG00000000335) #7	ALG9 (ENSTGUG00000000331) #8	CRYAB (ENSTGUG00000000320) #11	HSPB2 (ENSTGUG00000025261) #12	C11orf52 (ENSTGUG00000021076) #13	DIXDC1 (ENSTGUG00000000315) #14	DLAT (ENSTGUG00000000308) #15	ENSTGUG00000000303 #17	SDHD (ENSTGUG00000028553) #18	IL18 (ENSTGUG00000000297) #19	ENSTGUG00000029377	BCO2 (ENSTGUG00000000294) #21	PTS (ENSTGUG00000025708) #22	NCAM1 (ENSTGUG00000000275) #24	ENSTGUG00000000270 #25	ANKK1 (ENSTGUG00000000267) #26	DRD2 (ENSTGUG00000000255) #27	ZW10 (ENSTGUG00000000244) #29	ENSTGUG00000000240 #30	CD3E (ENSTGUG00000022317) #31	MPZL2 (ENSTGUG00000000235) #32	MPZL3 (ENSTGUG00000018324) #33	ENSTGUG00000023037 #34	SCN2B (ENSTGUG00000017358) #35	SCN4B (ENSTGUG00000000230) #36	ENSTGUG00000000220	IL10RA (ENSTGUG00000000217)	ENSTGUG00000023210
Medium ground finch	MODERN SPECIES	150				ENSGFOG00000012460 #7	ALG9 (ENSGFOG00000012499) #8	FDXACB1 (ENSGFOG00000012514) #9	CRYAB (ENSGFOG00000012522) #11	HSPB2 (ENSGFOG00000012526) #12	ENSGFOG00000012530	DIXDC1 (ENSGFOG00000012534) #14	DLAT (ENSGFOG00000012546) #15	ENSGFOG00000012558 #17	SDHD (ENSGFOG00000012561) #18	IL18 (ENSGFOG00000012565) #19	BCO2 (ENSGFOG00000012569) #21	PTS (ENSGFOG00000012575) #22	NCAM1 (ENSGFOG00000012605) #24	ENSGFOG00000012842 #25	ANKK1 (ENSGFOG00000012848) #26	DRD2 (ENSGFOG00000012859) #27	ZW10 (ENSGFOG00000012992) #29	ENSGFOG00000013013 #30	CD3E (ENSGFOG00000013019) #31	MPZL2 (ENSGFOG00000013026) #32	MPZL3 (ENSGFOG00000013031) #33	SCN2B (ENSGFOG00000013042) #35	SCN4B (ENSGFOG00000013044) #36	ENSGFOG00000013052	IL10RA (ENSGFOG00000013098)	ENSGFOG00000013105	ENSGFOG00000013107
Flycatcher	MODERN SPECIES	16	LAYN (ENSFALG00000028964)	SIK2 (ENSFALG00000006150) #7	ALG9 (ENSFALG00000006166) #8	FDXACB1 (ENSFALG00000006177) #9	CRYAB (ENSFALG00000024054) #11	HSPB2 (ENSFALG00000028978) #12	ENSFALG00000025593	ENSFALG00000024941	DIXDC1 (ENSFALG00000006183) #14	DLAT (ENSFALG00000006186) #15	ENSFALG00000026805 #17	SDHD (ENSFALG00000006200) #18	ENSFALG00000026247 #19	TEX12 (ENSFALG00000027640) #20	BCO2 (ENSFALG00000006211) #21	PTS (ENSFALG00000006217) #22	ENSFALG00000027319 #23	NCAM1 (ENSFALG00000000245) #24	ENSFALG00000024892	ENSFALG00000000256 #25	ANKK1 (ENSFALG00000028921) #26	DRD2 (ENSFALG00000025466) #27	ENSFALG00000006001 #28	ENSFALG00000005989 #29	ENSFALG00000005983 #30	CD3E (ENSFALG00000005978) #31	MPZL2 (ENSFALG00000005973) #32	ENSFALG00000005965	ENSFALG00000027850	SCN2B (ENSFALG00000005949) #35	SCN4B (ENSFALG00000005937) #36
Great tit	MODERN SPECIES	16	BTG4 (ENSPMJG00000008597)	LAYN (ENSPMJG00000008593)	SIK2 (ENSPMJG00000008568) #7	FDXACB1 (ENSPMJG00000008567) #9	CRYAB (ENSPMJG00000008566) #11	HSPB2 (ENSPMJG00000008565) #12	ENSPMJG00000008564 #13	DIXDC1 (ENSPMJG00000008563) #14	DLAT (ENSPMJG00000008562) #15	ENSPMJG00000008561	ENSPMJG00000008560 #17	SDHD (ENSPMJG00000008559) #18	IL18 (ENSPMJG00000008558) #19	ENSPMJG00000008557	BCO2 (ENSPMJG00000008556) #21	PTS (ENSPMJG00000008555) #22	NCAM1 (ENSPMJG00000008553) #24	ENSPMJG00000008552	ENSPMJG00000008551 #25	ANKK1 (ENSPMJG00000008549) #26	DRD2 (ENSPMJG00000008548) #27	TMPRSS5 (ENSPMJG00000008539) #28	ZW10 (ENSPMJG00000008537) #29	ENSPMJG00000008535 #30	CD3E (ENSPMJG00000008534) #31	MPZL2 (ENSPMJG00000008533) #32	MPZL3 (ENSPMJG00000008532) #33	ENSPMJG00000008531 #34	SCN2B (ENSPMJG00000008530) #35	SCN4B (ENSPMJG00000008529) #36	TMPRSS4 (ENSPMJG00000008525) #37
African ostrich	MODERN SPECIES	447	BTG4 (ENSSCUG00000006862)	SIK2 (ENSSCUG00000006848) #7	ALG9 (ENSSCUG00000006841) #8	FDXACB1 (ENSSCUG00000006837) #9	CFAP68 (ENSSCUG00000006836) #10	CRYAB (ENSSCUG00000006835) #11	HSPB2 (ENSSCUG00000006833) #12	C11orf52 (ENSSCUG00000006831) #13	DIXDC1 (ENSSCUG00000006824) #14	DLAT (ENSSCUG00000006818) #15	PIH1D2 (ENSSCUG00000006814) #16	ENSSCUG00000006809	IL18 (ENSSCUG00000006806) #19	TEX12 (ENSSCUG00000006804) #20	BCO2 (ENSSCUG00000006802) #21	PTS (ENSSCUG00000006801) #22	NCAM1 (ENSSCUG00000006796) #24	ENSSCUG00000006793 #25
Cryptodira	ANCESTRAL SPECIES	32	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00990000212165	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b
Testudinoidea	ANCESTRAL SPECIES	29	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01070000254095.a	ENSGT00390000002752.t #22	ENSGT01070000254095.b	ENSGT00940000155743 #24	ENSGT00990000212165	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b
Testudinidae	ANCESTRAL SPECIES	35	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00950000182913.A.a #21	ENSGT01070000254095.a	ENSGT00390000002752.t #22	ENSGT01070000254095.b	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000174149	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	659										TEX12 (ENSCABG00000000380) #20	ENSCABG00000000383	BCO2 (ENSCABG00000000402) #21	ENSCABG00000000413	ENSCABG00000000424	ENSCABG00000000430	ENSCABG00000000439 #22	ENSCABG00000000440
Abingdon island giant tortoise	MODERN SPECIES	1548																ENSCABG00000020147 #22
Goode s thornscrub tortoise	MODERN SPECIES	10	CFAP68 (ENSGEVG00005019414) #10	CRYAB (ENSGEVG00005019422) #11	HSPB2 (ENSGEVG00005019425) #12	C11orf52 (ENSGEVG00005019429) #13	DIXDC1 (ENSGEVG00005019437) #14	ENSGEVG00005019460 #15	ENSGEVG00005019509 #16	ENSGEVG00005019522 #17	TIMM8B (ENSGEVG00005019529)	BCO2 (ENSGEVG00005019544) #21	ENSGEVG00005019598 #15	ENSGEVG00005019625 #16	ENSGEVG00005019643 #17	IL18 (ENSGEVG00005019650) #19	ENSGEVG00005019655	PTS (ENSGEVG00005019663) #22	ENSGEVG00005019671	ENSGEVG00005019682	NCAM1 (ENSGEVG00005019726) #24	ENSGEVG00005019834 #25	ENSGEVG00005019862 #26	DRD2 (ENSGEVG00005019882) #27	TMPRSS5 (ENSGEVG00005010922) #28	ZW10 (ENSGEVG00005011438) #29	ENSGEVG00005011564	ENSGEVG00005011753	USP28 (ENSGEVG00005012549)	ENSGEVG00005015204	HTR3B (ENSGEVG00005015315)	HTR3A (ENSGEVG00005015744)	ZBTB16 (ENSGEVG00005016935)
Emydidae	ANCESTRAL SPECIES	42	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00990000210192	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT01070000254095.a	ENSGT00390000002752.t #22	ENSGT01070000254095.b	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00990000212165	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.b.d.b
painted turtle	MODERN SPECIES	797	FDXACB1 (ENSCPBG00000009087) #9	CFAP68 (ENSCPBG00000009078) #10	CRYAB (ENSCPBG00000009073) #11	ENSCPBG00000009069	HSPB2 (ENSCPBG00000009065) #12	DIXDC1 (ENSCPBG00000009038) #14	DLAT (ENSCPBG00000009013) #15	PIH1D2 (ENSCPBG00000008997) #16	ENSCPBG00000008992 #17	TIMM8B (ENSCPBG00000008990)	SDHD (ENSCPBG00000008984) #18	IL18 (ENSCPBG00000008981) #19	TEX12 (ENSCPBG00000008977) #20	ENSCPBG00000008973	BCO2 (ENSCPBG00000008966) #21	PTS (ENSCPBG00000008963) #22	ENSCPBG00000008961	NCAM1 (ENSCPBG00000008941) #24	ENSCPBG00000008932 #25	ANKK1 (ENSCPBG00000008929) #26	DRD2 (ENSCPBG00000008925) #27
Three-toed box turtle	MODERN SPECIES	167	FDXACB1 (ENSTMTG00000007392) #9	CFAP68 (ENSTMTG00000007405) #10	CRYAB (ENSTMTG00000007418) #11	HSPB2 (ENSTMTG00000007434) #12	ENSTMTG00000007440	DIXDC1 (ENSTMTG00000007454) #14	DLAT (ENSTMTG00000007488) #15	PIH1D2 (ENSTMTG00000007522) #16	ENSTMTG00000007536 #17	TIMM8B (ENSTMTG00000007547)	SDHD (ENSTMTG00000007553) #18	IL18 (ENSTMTG00000007565) #19	TEX12 (ENSTMTG00000007584) #20	BCO2 (ENSTMTG00000007618) #21	ENSTMTG00000007636	PTS (ENSTMTG00000007652) #22	ENSTMTG00000007667	NCAM1 (ENSTMTG00000003252) #24	ENSTMTG00000003276	ENSTMTG00000003333	ANKK1 (ENSTMTG00000003345) #26	DRD2 (ENSTMTG00000003437) #27	ZW10 (ENSTMTG00000003881) #29	ENSTMTG00000004317	USP28 (ENSTMTG00000004431)	HTR3B (ENSTMTG00000005473)	HTR3A (ENSTMTG00000005487)	ZBTB16 (ENSTMTG00000005531)	ENSTMTG00000005554	ENSTMTG00000005620	ENSTMTG00000005643
Chinese turtle	MODERN SPECIES	147	SIK2 (ENSPSIG00000015360) #7	ALG9 (ENSPSIG00000015620) #8	CFAP68 (ENSPSIG00000015631) #10	CRYAB (ENSPSIG00000015818) #11	HSPB2 (ENSPSIG00000016134) #12	C11orf52 (ENSPSIG00000016205) #13	DIXDC1 (ENSPSIG00000016208) #14	DLAT (ENSPSIG00000016665) #15	PIH1D2 (ENSPSIG00000016791) #16	ENSPSIG00000016798 #17	TIMM8B (ENSPSIG00000016861)	SDHD (ENSPSIG00000017059) #18	IL18 (ENSPSIG00000017067) #19	BCO2 (ENSPSIG00000017228) #21	ENSPSIG00000017355 ##22	ENSPSIG00000017563 #22	ENSPSIG00000006318 ##22	NCAM1 (ENSPSIG00000006326) #24	ENSPSIG00000008549 #25	DRD2 (ENSPSIG00000009999) #27	TMPRSS5 (ENSPSIG00000010415) #28	FAM118B (ENSPSIG00000011290)	SRPRA (ENSPSIG00000012009)	FOXRED1 (ENSPSIG00000013268)	ENSPSIG00000013409	TIRAP (ENSPSIG00000014225)	DCPS (ENSPSIG00000014678)	ST3GAL4 (ENSPSIG00000014766)	KIRREL3 (ENSPSIG00000017414)	VPS26A (ENSPSIG00000017700)	SUPV3L1 (ENSPSIG00000017997)
Lepidosauria	ANCESTRAL SPECIES	20	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000167885	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000175256	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1213	ENSSPUG00000011238	RNF26 (ENSSPUG00000011210)	MCAM (ENSSPUG00000011168)	CBL (ENSSPUG00000011147)	NHERF4 (ENSSPUG00000011130)	NLRX1 (ENSSPUG00000011087)	ABCG4 (ENSSPUG00000010850)	HINFP (ENSSPUG00000010800)	POU2AF2 (ENSSPUG00000010786)	POU2AF3 (ENSSPUG00000010774)	POU2AF1 (ENSSPUG00000010760)	BTG4 (ENSSPUG00000010746)	LAYN (ENSSPUG00000010722)	SIK2 (ENSSPUG00000010660) #7	ALG9 (ENSSPUG00000010630) #8	ENSSPUG00000010616 #22	FDXACB1 (ENSSPUG00000010598) #9	CFAP68 (ENSSPUG00000010574) #10	CRYAB (ENSSPUG00000010558) #11	HSPB2 (ENSSPUG00000010549) #12	C11orf52 (ENSSPUG00000010535) #13	DIXDC1 (ENSSPUG00000010466) #14	DLAT (ENSSPUG00000010439) #15	PIH1D2 (ENSSPUG00000010427) #16	ENSSPUG00000010414 #17	TIMM8B (ENSSPUG00000010397)	ENSSPUG00000010380 #18	ENSSPUG00000010364 #19	TEX12 (ENSSPUG00000010347) #20	BCO2 (ENSSPUG00000010330) #21	ENSSPUG00000010314 #22
tuatara	MODERN SPECIES	1213	ENSSPUG00000010616 #22	FDXACB1 (ENSSPUG00000010598) #9	CFAP68 (ENSSPUG00000010574) #10	CRYAB (ENSSPUG00000010558) #11	HSPB2 (ENSSPUG00000010549) #12	C11orf52 (ENSSPUG00000010535) #13	DIXDC1 (ENSSPUG00000010466) #14	DLAT (ENSSPUG00000010439) #15	PIH1D2 (ENSSPUG00000010427) #16	ENSSPUG00000010414 #17	TIMM8B (ENSSPUG00000010397)	ENSSPUG00000010380 #18	ENSSPUG00000010364 #19	TEX12 (ENSSPUG00000010347) #20	BCO2 (ENSSPUG00000010330) #21	ENSSPUG00000010314 #22	ENSSPUG00000010291 ##22	SIPA1 (ENSSPUG00000010162)	ENSSPUG00000010131	EHBP1L1 (ENSSPUG00000010122)	ENSSPUG00000010108	MAP3K11 (ENSSPUG00000010050)	PCNX3 (ENSSPUG00000009894)	NCAM1 (ENSSPUG00000009819) #24	ENSSPUG00000009798	ANKK1 (ENSSPUG00000009781) #26	DRD2 (ENSSPUG00000009618) #27	ZW10 (ENSSPUG00000009497) #29	USP28 (ENSSPUG00000009463)	ENSSPUG00000009442	HTR3B (ENSSPUG00000009377)
Episquamata	ANCESTRAL SPECIES	12	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000167885	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a	ENSGT00870000136493.d
Laterata	ANCESTRAL SPECIES	15	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00950000182913.A.a #21	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.i.b	ENSGT00870000136493.d
Common wall lizard	MODERN SPECIES	6	ALG9 (ENSPMRG00000023233) #8	CFAP68 (ENSPMRG00000023243) #10	CRYAB (ENSPMRG00000023245) #11	HSPB2 (ENSPMRG00000023252) #12	C11orf52 (ENSPMRG00000023257) #13	ENSPMRG00000023262	DIXDC1 (ENSPMRG00000023274) #14	DLAT (ENSPMRG00000023308) #15	PIH1D2 (ENSPMRG00000023315) #16	ENSPMRG00000023325 #17	ENSPMRG00000023327	ENSPMRG00000023329 #18	ENSPMRG00000023333 #19	BCO2 (ENSPMRG00000023336) #21	ENSPMRG00000023338 ##22	PTS (ENSPMRG00000023341) #22	ENSPMRG00000023344 ##22	NCAM1 (ENSPMRG00000023386) #24	ENSPMRG00000023404	ENSPMRG00000023406 #25	ANKK1 (ENSPMRG00000023409) #26	DRD2 (ENSPMRG00000023410) #27	ENSPMRG00000023418 #28	ZW10 (ENSPMRG00000023428) #29	ENSPMRG00000023438	ENSPMRG00000023443	USP28 (ENSPMRG00000023454)	HTR3B (ENSPMRG00000023477)	HTR3A (ENSPMRG00000023485)	ZBTB16 (ENSPMRG00000023489)	ENSPMRG00000023494
Argentine black and white tegu	MODERN SPECIES	42	FDXACB1 (ENSSMRG00000021294) #9	CFAP68 (ENSSMRG00000021295) #10	CRYAB (ENSSMRG00000021296) #11	HSPB2 (ENSSMRG00000021297) #12	C11orf52 (ENSSMRG00000021298) #13	DIXDC1 (ENSSMRG00000021299) #14	DLAT (ENSSMRG00000021300) #15	PIH1D2 (ENSSMRG00000021301) #16	ENSSMRG00000021302	ENSSMRG00000021303 #17	ENSSMRG00000021304	SDHD (ENSSMRG00000021305) #18	IL18 (ENSSMRG00000021306) #19	BCO2 (ENSSMRG00000021307) #21	ENSSMRG00000021308 ##22	PTS (ENSSMRG00000021309) #22	ENSSMRG00000021310 ##22	NCAM1 (ENSSMRG00000021312) #24	ENSSMRG00000021314 #25	DRD2 (ENSSMRG00000021316) #27	ENSSMRG00000021378 #28	ZW10 (ENSSMRG00000021379) #29	ENSSMRG00000021380	ENSSMRG00000021381	USP28 (ENSSMRG00000021382)	HTR3A (ENSSMRG00000021388)	ZBTB16 (ENSSMRG00000021389)	ENSSMRG00000021391	ENSSMRG00000021392	ENSSMRG00000021393	ENSSMRG00000021394
Toxicofera	ANCESTRAL SPECIES	20	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093
Lizard	MODERN SPECIES	1555																ENSACAG00000043147 #22	ENSACAG00000042981	ENSACAG00000040318	BCO2 (ENSACAG00000015299) #21	ENSACAG00000037543	ENSACAG00000015396 #19	SDHD (ENSACAG00000015409) #18	TIMM8B (ENSACAG00000042536)	ENSACAG00000015430	PIH1D2 (ENSACAG00000015437) #16	DLAT (ENSACAG00000022510) #15	ENSACAG00000045448 #14
Elapidae	ANCESTRAL SPECIES	15	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a.c #21	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000155539.a.a #27	ENSGT00390000016427 #29	ENSGT01000000220650	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.h	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093
Elapidae_a	ANCESTRAL SPECIES	31	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a.c #21	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000155539.a.a #27	ENSGT00390000016427 #29	ENSGT01000000220650	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670.j	ENSGT00940000157670.i	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.g.a.a.a	ENSGT00390000011708.a.h	ENSGT00870000136493.d
Acanthophiinae	ANCESTRAL SPECIES	30	ENSGT00940000156445 #7	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00950000182913.A.a.c #21	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000155539.a.a #27	ENSGT00390000016427 #29	ENSGT01000000220650	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670.j.a	ENSGT00940000157670.i	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.g.a.a.a	ENSGT00390000011708.a.h	ENSGT00870000136493.d
Eastern brown snake	MODERN SPECIES	42	ENSPTXG00000004569	LAYN (ENSPTXG00000004570)	SIK2 (ENSPTXG00000004576) #7	ALG9 (ENSPTXG00000004586) #8	FDXACB1 (ENSPTXG00000004589) #9	CFAP68 (ENSPTXG00000004592) #10	CRYAB (ENSPTXG00000004595) #11	HSPB2 (ENSPTXG00000004597) #12	DLAT (ENSPTXG00000004598) #15	PIH1D2 (ENSPTXG00000004602) #16	ENSPTXG00000004653 #17	TIMM8B (ENSPTXG00000004654)	SDHD (ENSPTXG00000004657) #18	ENSPTXG00000004659 #19	ENSPTXG00000004660	PTS (ENSPTXG00000004661) #22	ENSPTXG00000004662 ##22	NCAM1 (ENSPTXG00000004664) #24	ENSPTXG00000004669 #25	DRD2 (ENSPTXG00000004673) #27	ZW10 (ENSPTXG00000004831) #29	ENSPTXG00000004898	ENSPTXG00000004899	USP28 (ENSPTXG00000004900)	HTR3A (ENSPTXG00000004902)	ZBTB16 (ENSPTXG00000004903)	ENSPTXG00000004904	ENSPTXG00000004905	RBM7 (ENSPTXG00000004906)	REXO2 (ENSPTXG00000004907)	CADM1 (ENSPTXG00000004908)
Mainland tiger snake	MODERN SPECIES	143	SIK2 (ENSNSUG00000003985) #7	ALG9 (ENSNSUG00000004011) #8	FDXACB1 (ENSNSUG00000004027) #9	CFAP68 (ENSNSUG00000004029) #10	CRYAB (ENSNSUG00000004030) #11	HSPB2 (ENSNSUG00000004032) #12	C11orf52 (ENSNSUG00000004034) #13	DIXDC1 (ENSNSUG00000004035) #14	DLAT (ENSNSUG00000004037) #15	PIH1D2 (ENSNSUG00000004046) #16	ENSNSUG00000004075 #17	TIMM8B (ENSNSUG00000004076)	ENSNSUG00000004078	ENSNSUG00000004079 #19	BCO2 (ENSNSUG00000004081) #21	PTS (ENSNSUG00000004087) #22	ENSNSUG00000004097 ##22	NCAM1 (ENSNSUG00000004102) #24	ENSNSUG00000004125 #25	DRD2 (ENSNSUG00000004132) #27	ENSNSUG00000004158	ZW10 (ENSNSUG00000004159) #29	ENSNSUG00000004160	ENSNSUG00000004164	ENSNSUG00000004170	ENSNSUG00000004172	HTR3A (ENSNSUG00000004173)	ENSNSUG00000004176	RBM7 (ENSNSUG00000004183)	REXO2 (ENSNSUG00000004199)	CADM1 (ENSNSUG00000004209)
Blue-lipped sea krait	MODERN SPECIES	2661													ENSLLTG00000017269 #19	TEX12 (ENSLLTG00000017277) #20	BCO2 (ENSLLTG00000017282) #21	PTS (ENSLLTG00000017287) #22	ENSLLTG00000017288 ##22	NCAM1 (ENSLLTG00000017301) #24
Indian cobra	MODERN SPECIES	7	ENSNNAG00000014401 #7	ALG9 (ENSNNAG00000014455) #8	FDXACB1 (ENSNNAG00000014989) #9	CFAP68 (ENSNNAG00000015006) #10	CRYAB (ENSNNAG00000015018) #11	HSPB2 (ENSNNAG00000015023) #12	ENSNNAG00000015030 #14	C11orf52 (ENSNNAG00000015046) #13	ENSNNAG00000015085 #14	ENSNNAG00000008004 #16	ENSNNAG00000008013 #17	TIMM8B (ENSNNAG00000008027)	SDHD (ENSNNAG00000008056) #18	IL18 (ENSNNAG00000008078) #19	ENSNNAG00000008121 #21	PTS (ENSNNAG00000008257) #22	ENSNNAG00000008375 ##22	NCAM1 (ENSNNAG00000008466) #24	ENSNNAG00000009980 #25	DRD2 (ENSNNAG00000010026) #27	ZW10 (ENSNNAG00000010450) #29	ENSNNAG00000010500	ENSNNAG00000010543	ENSNNAG00000010873	USP28 (ENSNNAG00000010906)	HTR3A (ENSNNAG00000011157)	ZBTB16 (ENSNNAG00000011173)	ENSNNAG00000011192	ENSNNAG00000011206	ENSNNAG00000011268	ENSNNAG00000011293
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	31	ENSGT00940000158478	ENSGT00940000175256	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000161758	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00900000143181 #23	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT01070000254095	ENSGT00950000182913.A.a #21	ENSGT00940000180437	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00940000167885	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12
Archelosauria	ANCESTRAL SPECIES	31	ENSGT00940000158478	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000161758	ENSGT00990000212165	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00900000143181 #23	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT01070000254095	ENSGT00950000182913.A.a #21	ENSGT00940000180437	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11
Archosauria	ANCESTRAL SPECIES	283															ENSGT01020000231542	ENSGT00390000002752.s.a ##22
Australian saltwater crocodile	MODERN SPECIES	54	FDXACB1 (ENSCPRG00005004219) #9	CFAP68 (ENSCPRG00005004223) #10	CRYAB (ENSCPRG00005004228) #11	HSPB2 (ENSCPRG00005004244) #12	C11orf52 (ENSCPRG00005004247) #13	DIXDC1 (ENSCPRG00005004276) #14	DLAT (ENSCPRG00005004474) #15	PIH1D2 (ENSCPRG00005004484) #16	ENSCPRG00005004497 #17	TIMM8B (ENSCPRG00005004502)	SDHD (ENSCPRG00005004510) #18	IL18 (ENSCPRG00005004512) #19	TEX12 (ENSCPRG00005004537) #20	BCO2 (ENSCPRG00005004540) #21	ENSCPRG00005004558	ENSCPRG00005004561 ##22	ENSCPRG00005004564 ##22	NCAM1 (ENSCPRG00005004761) #24	ENSCPRG00005006647	ENSCPRG00005006651	ENSCPRG00005006658 #25	DRD2 (ENSCPRG00005006680) #27	HYOU1 (ENSCPRG00005006785)	SLC37A4 (ENSCPRG00005006804)	TRAPPC4 (ENSCPRG00005006812)	ENSCPRG00005006834	CENATAC (ENSCPRG00005006838)	ENSCPRG00005006851	UPK2 (ENSCPRG00005006860)	BCL9L (ENSCPRG00005006873)	CXCR5 (ENSCPRG00005006876)
Cryptodira	ANCESTRAL SPECIES	32	ENSGT00940000157705.l	ENSGT00940000158478	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000161758	ENSGT00990000212165	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT01070000254095	ENSGT00950000182913.A.a #21	ENSGT00940000180437	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11	ENSGT00390000002905 #10
Chinese turtle	MODERN SPECIES	147	VPS26A (ENSPSIG00000017700)	KIRREL3 (ENSPSIG00000017414)	ST3GAL4 (ENSPSIG00000014766)	DCPS (ENSPSIG00000014678)	TIRAP (ENSPSIG00000014225)	ENSPSIG00000013409	FOXRED1 (ENSPSIG00000013268)	SRPRA (ENSPSIG00000012009)	FAM118B (ENSPSIG00000011290)	TMPRSS5 (ENSPSIG00000010415) #28	DRD2 (ENSPSIG00000009999) #27	ENSPSIG00000008549 #25	NCAM1 (ENSPSIG00000006326) #24	ENSPSIG00000006318 ##22	ENSPSIG00000017563 #22	ENSPSIG00000017355 ##22	BCO2 (ENSPSIG00000017228) #21	IL18 (ENSPSIG00000017067) #19	SDHD (ENSPSIG00000017059) #18	TIMM8B (ENSPSIG00000016861)	ENSPSIG00000016798 #17	PIH1D2 (ENSPSIG00000016791) #16	DLAT (ENSPSIG00000016665) #15	DIXDC1 (ENSPSIG00000016208) #14	C11orf52 (ENSPSIG00000016205) #13	HSPB2 (ENSPSIG00000016134) #12	CRYAB (ENSPSIG00000015818) #11	CFAP68 (ENSPSIG00000015631) #10	ALG9 (ENSPSIG00000015620) #8	SIK2 (ENSPSIG00000015360) #7	LAYN (ENSPSIG00000014860)
Lepidosauria	ANCESTRAL SPECIES	20	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000158478	ENSGT00940000175256	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT01070000254095	ENSGT00950000182913.A.a #21	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00940000167885	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11
Episquamata	ANCESTRAL SPECIES	12	ENSGT00390000011708.a	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000158478	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT01070000254095	ENSGT00950000182913.A.a #21	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00940000167885	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11
Laterata	ANCESTRAL SPECIES	15	ENSGT00390000011708.a.i.b	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000158478	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT00950000182913.A.a #21	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11	ENSGT00390000002905 #10	ENSGT00940000160701 #9	ENSGT00950000183090.D #8
Argentine black and white tegu	MODERN SPECIES	42	ENSSMRG00000021393	ENSSMRG00000021392	ENSSMRG00000021391	ZBTB16 (ENSSMRG00000021389)	HTR3A (ENSSMRG00000021388)	USP28 (ENSSMRG00000021382)	ENSSMRG00000021381	ENSSMRG00000021380	ZW10 (ENSSMRG00000021379) #29	ENSSMRG00000021378 #28	DRD2 (ENSSMRG00000021316) #27	ENSSMRG00000021314 #25	NCAM1 (ENSSMRG00000021312) #24	ENSSMRG00000021310 ##22	PTS (ENSSMRG00000021309) #22	ENSSMRG00000021308 ##22	BCO2 (ENSSMRG00000021307) #21	IL18 (ENSSMRG00000021306) #19	SDHD (ENSSMRG00000021305) #18	ENSSMRG00000021304	ENSSMRG00000021303 #17	ENSSMRG00000021302	PIH1D2 (ENSSMRG00000021301) #16	DLAT (ENSSMRG00000021300) #15	DIXDC1 (ENSSMRG00000021299) #14	C11orf52 (ENSSMRG00000021298) #13	HSPB2 (ENSSMRG00000021297) #12	CRYAB (ENSSMRG00000021296) #11	CFAP68 (ENSSMRG00000021295) #10	FDXACB1 (ENSSMRG00000021294) #9	ALG9 (ENSSMRG00000021293) #8
Common wall lizard	MODERN SPECIES	6	ZBTB16 (ENSPMRG00000023489)	HTR3A (ENSPMRG00000023485)	HTR3B (ENSPMRG00000023477)	USP28 (ENSPMRG00000023454)	ENSPMRG00000023443	ENSPMRG00000023438	ZW10 (ENSPMRG00000023428) #29	ENSPMRG00000023418 #28	DRD2 (ENSPMRG00000023410) #27	ANKK1 (ENSPMRG00000023409) #26	ENSPMRG00000023406 #25	ENSPMRG00000023404	NCAM1 (ENSPMRG00000023386) #24	ENSPMRG00000023344 ##22	PTS (ENSPMRG00000023341) #22	ENSPMRG00000023338 ##22	BCO2 (ENSPMRG00000023336) #21	ENSPMRG00000023333 #19	ENSPMRG00000023329 #18	ENSPMRG00000023327	ENSPMRG00000023325 #17	PIH1D2 (ENSPMRG00000023315) #16	DLAT (ENSPMRG00000023308) #15	DIXDC1 (ENSPMRG00000023274) #14	ENSPMRG00000023262	C11orf52 (ENSPMRG00000023257) #13	HSPB2 (ENSPMRG00000023252) #12	CRYAB (ENSPMRG00000023245) #11	CFAP68 (ENSPMRG00000023243) #10	ALG9 (ENSPMRG00000023233) #8	SIK2 (ENSPMRG00000023199) #7
Sauria	ANCESTRAL SPECIES	31	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000167885	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000175256	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a
Archelosauria	ANCESTRAL SPECIES	31	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00960000189707	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00900000143181 #23	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00990000212165	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.b
Cryptodira	ANCESTRAL SPECIES	32	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000180437	ENSGT00950000182913.A.a #21	ENSGT01070000254095	ENSGT00390000002752.s.a ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.b ##22	ENSGT00940000155743 #24	ENSGT00990000212165	ENSGT00940000161758	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.b.d.b
Chinese turtle	MODERN SPECIES	147	ALG9 (ENSPSIG00000015620) #8	CFAP68 (ENSPSIG00000015631) #10	CRYAB (ENSPSIG00000015818) #11	HSPB2 (ENSPSIG00000016134) #12	C11orf52 (ENSPSIG00000016205) #13	DIXDC1 (ENSPSIG00000016208) #14	DLAT (ENSPSIG00000016665) #15	PIH1D2 (ENSPSIG00000016791) #16	ENSPSIG00000016798 #17	TIMM8B (ENSPSIG00000016861)	SDHD (ENSPSIG00000017059) #18	IL18 (ENSPSIG00000017067) #19	BCO2 (ENSPSIG00000017228) #21	ENSPSIG00000017355 ##22	ENSPSIG00000017563 #22	ENSPSIG00000006318 ##22	NCAM1 (ENSPSIG00000006326) #24	ENSPSIG00000008549 #25	DRD2 (ENSPSIG00000009999) #27	TMPRSS5 (ENSPSIG00000010415) #28	FAM118B (ENSPSIG00000011290)	SRPRA (ENSPSIG00000012009)	FOXRED1 (ENSPSIG00000013268)	ENSPSIG00000013409	TIRAP (ENSPSIG00000014225)	DCPS (ENSPSIG00000014678)	ST3GAL4 (ENSPSIG00000014766)	KIRREL3 (ENSPSIG00000017414)	VPS26A (ENSPSIG00000017700)	SUPV3L1 (ENSPSIG00000017997)
Archosauria	ANCESTRAL SPECIES																	ENSGT00390000002752.s.b ##22
Australian saltwater crocodile	MODERN SPECIES	54	DDX6 (ENSCPRG00005006930)	CXCR5 (ENSCPRG00005006876)	BCL9L (ENSCPRG00005006873)	UPK2 (ENSCPRG00005006860)	ENSCPRG00005006851	CENATAC (ENSCPRG00005006838)	ENSCPRG00005006834	TRAPPC4 (ENSCPRG00005006812)	SLC37A4 (ENSCPRG00005006804)	HYOU1 (ENSCPRG00005006785)	DRD2 (ENSCPRG00005006680) #27	ENSCPRG00005006658 #25	ENSCPRG00005006651	ENSCPRG00005006647	NCAM1 (ENSCPRG00005004761) #24	ENSCPRG00005004564 ##22	ENSCPRG00005004561 ##22	ENSCPRG00005004558	BCO2 (ENSCPRG00005004540) #21	TEX12 (ENSCPRG00005004537) #20	IL18 (ENSCPRG00005004512) #19	SDHD (ENSCPRG00005004510) #18	TIMM8B (ENSCPRG00005004502)	ENSCPRG00005004497 #17	PIH1D2 (ENSCPRG00005004484) #16	DLAT (ENSCPRG00005004474) #15	DIXDC1 (ENSCPRG00005004276) #14	C11orf52 (ENSCPRG00005004247) #13	HSPB2 (ENSCPRG00005004244) #12	CRYAB (ENSCPRG00005004228) #11	CFAP68 (ENSCPRG00005004223) #10
Lepidosauria	ANCESTRAL SPECIES	20	ENSGT00870000136493.d	ENSGT00390000011708.a	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000158478	ENSGT00940000175256	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT01070000254095	ENSGT00950000182913.A.a #21	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00940000167885	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13
Episquamata	ANCESTRAL SPECIES	12	ENSGT00390000009255	ENSGT00870000136493.d	ENSGT00390000011708.a	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000158478	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT01070000254095	ENSGT00950000182913.A.a #21	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00940000167885	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13
Laterata	ANCESTRAL SPECIES	15	ENSGT00390000009255	ENSGT00870000136493.d	ENSGT00390000011708.a.i.b	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000158478	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000162060 #26	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00390000002752.s.a ##22	ENSGT00950000182913.A.a #21	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00960000189707	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11	ENSGT00390000002905 #10
Argentine black and white tegu	MODERN SPECIES	42	ENSSMRG00000021395	ENSSMRG00000021394	ENSSMRG00000021393	ENSSMRG00000021392	ENSSMRG00000021391	ZBTB16 (ENSSMRG00000021389)	HTR3A (ENSSMRG00000021388)	USP28 (ENSSMRG00000021382)	ENSSMRG00000021381	ENSSMRG00000021380	ZW10 (ENSSMRG00000021379) #29	ENSSMRG00000021378 #28	DRD2 (ENSSMRG00000021316) #27	ENSSMRG00000021314 #25	NCAM1 (ENSSMRG00000021312) #24	ENSSMRG00000021310 ##22	PTS (ENSSMRG00000021309) #22	ENSSMRG00000021308 ##22	BCO2 (ENSSMRG00000021307) #21	IL18 (ENSSMRG00000021306) #19	SDHD (ENSSMRG00000021305) #18	ENSSMRG00000021304	ENSSMRG00000021303 #17	ENSSMRG00000021302	PIH1D2 (ENSSMRG00000021301) #16	DLAT (ENSSMRG00000021300) #15	DIXDC1 (ENSSMRG00000021299) #14	C11orf52 (ENSSMRG00000021298) #13	HSPB2 (ENSSMRG00000021297) #12	CRYAB (ENSSMRG00000021296) #11	CFAP68 (ENSSMRG00000021295) #10
Common wall lizard	MODERN SPECIES	6	ENSPMRG00000023495	ENSPMRG00000023494	ZBTB16 (ENSPMRG00000023489)	HTR3A (ENSPMRG00000023485)	HTR3B (ENSPMRG00000023477)	USP28 (ENSPMRG00000023454)	ENSPMRG00000023443	ENSPMRG00000023438	ZW10 (ENSPMRG00000023428) #29	ENSPMRG00000023418 #28	DRD2 (ENSPMRG00000023410) #27	ANKK1 (ENSPMRG00000023409) #26	ENSPMRG00000023406 #25	ENSPMRG00000023404	NCAM1 (ENSPMRG00000023386) #24	ENSPMRG00000023344 ##22	PTS (ENSPMRG00000023341) #22	ENSPMRG00000023338 ##22	BCO2 (ENSPMRG00000023336) #21	ENSPMRG00000023333 #19	ENSPMRG00000023329 #18	ENSPMRG00000023327	ENSPMRG00000023325 #17	PIH1D2 (ENSPMRG00000023315) #16	DLAT (ENSPMRG00000023308) #15	DIXDC1 (ENSPMRG00000023274) #14	ENSPMRG00000023262	C11orf52 (ENSPMRG00000023257) #13	HSPB2 (ENSPMRG00000023252) #12	CRYAB (ENSPMRG00000023245) #11	CFAP68 (ENSPMRG00000023243) #10
Toxicofera	ANCESTRAL SPECIES	20	ENSGT00390000014500	ENSGT00940000156093	ENSGT00390000009255	ENSGT00870000136493.d	ENSGT00390000011708.a	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT00390000016427 #29	ENSGT00940000159163 #28	ENSGT00940000155539.a.a #27	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00950000182913.A.a #21	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11	ENSGT00390000002905 #10	ENSGT00940000160701 #9
Elapidae	ANCESTRAL SPECIES	15	ENSGT00390000014500	ENSGT00940000156093	ENSGT00390000009255	ENSGT00870000136493.d	ENSGT00390000011708.a.h	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000157670	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT01000000220650	ENSGT00390000016427 #29	ENSGT00940000155539.a.a #27	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00950000182913.A.a.c #21	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11	ENSGT00390000002905 #10	ENSGT00940000160701 #9
Elapidae_a	ANCESTRAL SPECIES	31	ENSGT00390000009255	ENSGT00870000136493.d	ENSGT00390000011708.a.h	ENSGT00390000011708.a.g.a.a.a	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000157670.i	ENSGT00940000157670.j	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT01000000220650	ENSGT00390000016427 #29	ENSGT00940000155539.a.a #27	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00950000182913.A.a.c #21	ENSGT00390000006602 #20	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11	ENSGT00390000002905 #10	ENSGT00940000160701 #9
Acanthophiinae	ANCESTRAL SPECIES	30	ENSGT00390000009255	ENSGT00870000136493.d	ENSGT00390000011708.a.h	ENSGT00390000011708.a.g.a.a.a	ENSGT00940000154616.b	ENSGT00940000157705.l	ENSGT00940000157670.i	ENSGT00940000157670.j.a	ENSGT00940000161922.i.a	ENSGT01080000257365.b.a.a.a	ENSGT01000000220650	ENSGT00390000016427 #29	ENSGT00940000155539.a.a #27	ENSGT00940000164257 #25	ENSGT00940000155743 #24	ENSGT00390000002752.s.b ##22	ENSGT00390000002752.t #22	ENSGT00950000182913.A.a.c #21	ENSGT00390000001053 #19	ENSGT00390000010003 #18	ENSGT00940000155479	ENSGT00940000166399 #17	ENSGT00510000048581 #16	ENSGT00940000154943 #15	ENSGT00950000182903.b.b #14	ENSGT00390000015195 #13	ENSGT00940000161288 #12	ENSGT00940000157434 #11	ENSGT00390000002905 #10	ENSGT00940000160701 #9	ENSGT00950000183090.D #8
Mainland tiger snake	MODERN SPECIES	143	BUD13 (ENSNSUG00000004214)	CADM1 (ENSNSUG00000004209)	REXO2 (ENSNSUG00000004199)	RBM7 (ENSNSUG00000004183)	ENSNSUG00000004176	HTR3A (ENSNSUG00000004173)	ENSNSUG00000004172	ENSNSUG00000004170	ENSNSUG00000004164	ENSNSUG00000004160	ZW10 (ENSNSUG00000004159) #29	ENSNSUG00000004158	DRD2 (ENSNSUG00000004132) #27	ENSNSUG00000004125 #25	NCAM1 (ENSNSUG00000004102) #24	ENSNSUG00000004097 ##22	PTS (ENSNSUG00000004087) #22	BCO2 (ENSNSUG00000004081) #21	ENSNSUG00000004079 #19	ENSNSUG00000004078	TIMM8B (ENSNSUG00000004076)	ENSNSUG00000004075 #17	PIH1D2 (ENSNSUG00000004046) #16	DLAT (ENSNSUG00000004037) #15	DIXDC1 (ENSNSUG00000004035) #14	C11orf52 (ENSNSUG00000004034) #13	HSPB2 (ENSNSUG00000004032) #12	CRYAB (ENSNSUG00000004030) #11	CFAP68 (ENSNSUG00000004029) #10	FDXACB1 (ENSNSUG00000004027) #9	ALG9 (ENSNSUG00000004011) #8
Eastern brown snake	MODERN SPECIES	42	BUD13 (ENSPTXG00000004909)	CADM1 (ENSPTXG00000004908)	REXO2 (ENSPTXG00000004907)	RBM7 (ENSPTXG00000004906)	ENSPTXG00000004905	ENSPTXG00000004904	ZBTB16 (ENSPTXG00000004903)	HTR3A (ENSPTXG00000004902)	USP28 (ENSPTXG00000004900)	ENSPTXG00000004899	ENSPTXG00000004898	ZW10 (ENSPTXG00000004831) #29	DRD2 (ENSPTXG00000004673) #27	ENSPTXG00000004669 #25	NCAM1 (ENSPTXG00000004664) #24	ENSPTXG00000004662 ##22	PTS (ENSPTXG00000004661) #22	ENSPTXG00000004660	ENSPTXG00000004659 #19	SDHD (ENSPTXG00000004657) #18	TIMM8B (ENSPTXG00000004654)	ENSPTXG00000004653 #17	PIH1D2 (ENSPTXG00000004602) #16	DLAT (ENSPTXG00000004598) #15	HSPB2 (ENSPTXG00000004597) #12	CRYAB (ENSPTXG00000004595) #11	CFAP68 (ENSPTXG00000004592) #10	FDXACB1 (ENSPTXG00000004589) #9	ALG9 (ENSPTXG00000004586) #8	SIK2 (ENSPTXG00000004576) #7	LAYN (ENSPTXG00000004570)
Blue-lipped sea krait	MODERN SPECIES	2661															NCAM1 (ENSLLTG00000017301) #24	ENSLLTG00000017288 ##22	PTS (ENSLLTG00000017287) #22	BCO2 (ENSLLTG00000017282) #21	TEX12 (ENSLLTG00000017277) #20	ENSLLTG00000017269 #19
Indian cobra	MODERN SPECIES	7	ENSNNAG00000011324	ENSNNAG00000011293	ENSNNAG00000011268	ENSNNAG00000011206	ENSNNAG00000011192	ZBTB16 (ENSNNAG00000011173)	HTR3A (ENSNNAG00000011157)	USP28 (ENSNNAG00000010906)	ENSNNAG00000010873	ENSNNAG00000010543	ENSNNAG00000010500	ZW10 (ENSNNAG00000010450) #29	DRD2 (ENSNNAG00000010026) #27	ENSNNAG00000009980 #25	NCAM1 (ENSNNAG00000008466) #24	ENSNNAG00000008375 ##22	PTS (ENSNNAG00000008257) #22	ENSNNAG00000008121 #21	IL18 (ENSNNAG00000008078) #19	SDHD (ENSNNAG00000008056) #18	TIMM8B (ENSNNAG00000008027)	ENSNNAG00000008013 #17	ENSNNAG00000008004 #16	ENSNNAG00000015085 #14	C11orf52 (ENSNNAG00000015046) #13	ENSNNAG00000015030 #14	HSPB2 (ENSNNAG00000015023) #12	CRYAB (ENSNNAG00000015018) #11	CFAP68 (ENSNNAG00000015006) #10	FDXACB1 (ENSNNAG00000014989) #9	ALG9 (ENSNNAG00000014455) #8
tuatara	MODERN SPECIES	1213	HTR3A (ENSSPUG00000009348)	HTR3B (ENSSPUG00000009377)	ENSSPUG00000009442	USP28 (ENSSPUG00000009463)	ZW10 (ENSSPUG00000009497) #29	DRD2 (ENSSPUG00000009618) #27	ANKK1 (ENSSPUG00000009781) #26	ENSSPUG00000009798	NCAM1 (ENSSPUG00000009819) #24	PCNX3 (ENSSPUG00000009894)	MAP3K11 (ENSSPUG00000010050)	ENSSPUG00000010108	EHBP1L1 (ENSSPUG00000010122)	ENSSPUG00000010131	SIPA1 (ENSSPUG00000010162)	ENSSPUG00000010291 ##22	ENSSPUG00000010314 #22	BCO2 (ENSSPUG00000010330) #21	TEX12 (ENSSPUG00000010347) #20	ENSSPUG00000010364 #19	ENSSPUG00000010380 #18	TIMM8B (ENSSPUG00000010397)	ENSSPUG00000010414 #17	PIH1D2 (ENSSPUG00000010427) #16	DLAT (ENSSPUG00000010439) #15	DIXDC1 (ENSSPUG00000010466) #14	C11orf52 (ENSSPUG00000010535) #13	HSPB2 (ENSSPUG00000010549) #12	CRYAB (ENSSPUG00000010558) #11	CFAP68 (ENSSPUG00000010574) #10	FDXACB1 (ENSSPUG00000010598) #9
Mammalia	ANCESTRAL SPECIES	29	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT01020000231542	ENSGT00390000002752 #22	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c
Platypus	MODERN SPECIES	2	ENSOANG00000036757	ENSOANG00000037618	PPP2R1B (ENSOANG00000014964)	ALG9 (ENSOANG00000003843) #8	CFAP68 (ENSOANG00000048516) #10	HSPB2 (ENSOANG00000037146) #12	CRYAB (ENSOANG00000006525) #11	DIXDC1 (ENSOANG00000050939) #14	DLAT (ENSOANG00000010422) #15	ENSOANG00000048990 #16	ENSOANG00000019850 #17	ENSOANG00000047280	SDHD (ENSOANG00000045802) #18	ENSOANG00000046225 #19	BCO2 (ENSOANG00000047779) #21	PTS (ENSOANG00000050402) #22	NCAM1 (ENSOANG00000012271) #24	ENSOANG00000010971 #25	DRD2 (ENSOANG00000010970) #27	ENSOANG00000046817 #28	ZW10 (ENSOANG00000014313) #29	USP28 (ENSOANG00000036341)	ENSOANG00000019767	HTR3A (ENSOANG00000015811)	ZBTB16 (ENSOANG00000049678)	NNMT (ENSOANG00000047239)	RBM7 (ENSOANG00000001754)	ENSOANG00000013471	ENSOANG00000039384	ENSOANG00000038092	ENSOANG00000013472
Theria	ANCESTRAL SPECIES	15	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT01020000231542	ENSGT00390000002752 #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00870000136493.d
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053.a #19	ENSGT00390000006602 #20	ENSGT00390000001053.b.b #19	ENSGT00950000182913.A.a #21	ENSGT00390000002752 #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053.a #19	ENSGT00390000006602 #20	ENSGT00390000001053.b.a #19	ENSGT00390000001053.b.b #19	ENSGT00950000182913.A.a #21	ENSGT00390000002752 #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b	ENSGT00870000136493.d
Diprotodontia	ANCESTRAL SPECIES	62	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053.a #19	ENSGT00390000006602 #20	ENSGT00390000001053.b.a #19	ENSGT00390000001053.b.b #19	ENSGT00950000182913.A.a #21	ENSGT00390000002752 #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b	ENSGT00870000136493.d
Diprotodontia_a	ANCESTRAL SPECIES	60	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00940000166399 #17	ENSGT00940000155479	ENSGT00390000010003.i #18	ENSGT00390000001053.a #19	ENSGT00390000006602 #20	ENSGT00390000001053.b.a #19	ENSGT00950000182913.A.a #21	ENSGT00390000002752 #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000164257 #25	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b	ENSGT00870000136493.d
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1217	CFAP68 (ENSVURG00010019589) #10	CRYAB (ENSVURG00010019572) #11	HSPB2 (ENSVURG00010019567) #12	C11orf52 (ENSVURG00010019559) #13	DIXDC1 (ENSVURG00010019534) #14	ENSVURG00010019522	DLAT (ENSVURG00010019516) #15	PIH1D2 (ENSVURG00010019497) #16	ENSVURG00010019488 #17	TIMM8B (ENSVURG00010019485)	SDHD (ENSVURG00010019477) #18	ENSVURG00010019469 #19	TEX12 (ENSVURG00010019463) #20	ENSVURG00010019458 #19	BCO2 (ENSVURG00010019440) #21	ENSVURG00010019426 #22	ENSVURG00010019421	NCAM1 (ENSVURG00010019135) #24	ENSVURG00010019055 #25	ANKK1 (ENSVURG00010019038) #26	DRD2 (ENSVURG00010019013) #27	ENSVURG00010018956 #28	ZW10 (ENSVURG00010018938) #29	CLDN25 (ENSVURG00010018935)	USP28 (ENSVURG00010018906)	HTR3B (ENSVURG00010018718)	ENSVURG00010018696	HTR3A (ENSVURG00010018685)	ZBTB16 (ENSVURG00010018673)
Common wonbat	MODERN SPECIES	1041					ENSVURG00010016992	ENSVURG00010016987	MAP4K4 (ENSVURG00010015448)	ENSVURG00010015368	RFX8 (ENSVURG00010015354)	CREG2 (ENSVURG00010015348)	ENSVURG00010015341	CNOT11 (ENSVURG00010015327)	ROBO2 (ENSVURG00010015022)	ENSVURG00010014978	ROBO1 (ENSVURG00010014872)	ENSVURG00010014853 #22	ENSVURG00010014848	ENSVURG00010014836	GBE1 (ENSVURG00010014817)	ENSVURG00010014797	ENSVURG00010014793	ENSVURG00010014786	ENSVURG00010014781	ENSVURG00010014772	ENSVURG00010014756	CADM2 (ENSVURG00010014709)	VGLL3 (ENSVURG00010014686)	CHMP2B (ENSVURG00010014647)	POU1F1 (ENSVURG00010014629)	ENSVURG00010014618	HTR1F (ENSVURG00010014615)
koala	MODERN SPECIES	35	ENSPCIG00000027637	ALG9 (ENSPCIG00000027636) #8	CFAP68 (ENSPCIG00000027640) #10	CRYAB (ENSPCIG00000027641) #11	HSPB2 (ENSPCIG00000027642) #12	DIXDC1 (ENSPCIG00000027644) #14	DLAT (ENSPCIG00000027645) #15	PIH1D2 (ENSPCIG00000027646) #16	ENSPCIG00000027647 #17	TIMM8B (ENSPCIG00000027648)	ENSPCIG00000027649 #18	ENSPCIG00000027650 #19	TEX12 (ENSPCIG00000027651) #20	ENSPCIG00000027652 #19	BCO2 (ENSPCIG00000027653) #21	PTS (ENSPCIG00000002961) #22	ENSPCIG00000036062	ENSPCIG00000034428	NCAM1 (ENSPCIG00000019219) #24	ENSPCIG00000017450 #25	ANKK1 (ENSPCIG00000009874) #26	DRD2 (ENSPCIG00000036468) #27	ENSPCIG00000011077	TMPRSS5 (ENSPCIG00000011083) #28	ZW10 (ENSPCIG00000011182) #29	USP28 (ENSPCIG00000011192)	HTR3B (ENSPCIG00000011207)	HTR3A (ENSPCIG00000011216)	ZBTB16 (ENSPCIG00000011217)	ENSPCIG00000011219	ENSPCIG00000011222
Tasmanian devil	MODERN SPECIES	2	FDXACB1 (ENSSHAG00000031064) #9	CFAP68 (ENSSHAG00000031679) #10	CRYAB (ENSSHAG00000013403) #11	HSPB2 (ENSSHAG00000013394) #12	DIXDC1 (ENSSHAG00000012980) #14	DLAT (ENSSHAG00000012834) #15	PIH1D2 (ENSSHAG00000012808) #16	ENSSHAG00000023987 #17	TIMM8B (ENSSHAG00000020676)	SDHD (ENSSHAG00000029744) #18	ENSSHAG00000025135 #19	TEX12 (ENSSHAG00000012317) #20	ENSSHAG00000020972 #19	ENSSHAG00000011671 #19	BCO2 (ENSSHAG00000011332) #21	PTS (ENSSHAG00000025109) #22	ENSSHAG00000021728	NCAM1 (ENSSHAG00000015333) #24	ENSSHAG00000014998 #25	ANKK1 (ENSSHAG00000014896) #26	DRD2 (ENSSHAG00000014765) #27	ENSSHAG00000024062 #28	ZW10 (ENSSHAG00000013072) #29	CLDN25 (ENSSHAG00000013021)	USP28 (ENSSHAG00000012648)	HTR3B (ENSSHAG00000023064)	HTR3A (ENSSHAG00000011944)	ZBTB16 (ENSSHAG00000009882)	ENSSHAG00000029533	ENSSHAG00000026826	RBM7 (ENSSHAG00000008426)
Opossum	MODERN SPECIES	3	ENSMODG00000050536 #10	ENSMODG00000049299	CRYAB (ENSMODG00000014453) #11	HSPB2 (ENSMODG00000014448) #12	C11orf52 (ENSMODG00000047553) #13	DIXDC1 (ENSMODG00000014441) #14	DLAT (ENSMODG00000014415) #15	PIH1D2 (ENSMODG00000014401) #16	ENSMODG00000014393 #17	TIMM8B (ENSMODG00000014390)	SDHD (ENSMODG00000014388) #18	ENSMODG00000014381 #19	ENSMODG00000025566	ENSMODG00000025565 #19	BCO2 (ENSMODG00000014369) #21	PTS (ENSMODG00000039685) #22	ENSMODG00000025564	ENSMODG00000043115 #23	NCAM1 (ENSMODG00000014314) #24	ENSMODG00000014228 #25	ANKK1 (ENSMODG00000014205) #26	DRD2 (ENSMODG00000014196) #27	TMPRSS5 (ENSMODG00000014192) #28	ZW10 (ENSMODG00000038051) #29	CLDN25 (ENSMODG00000014183)	USP28 (ENSMODG00000014180)	HTR3B (ENSMODG00000014162)	HTR3A (ENSMODG00000014158)	ZBTB16 (ENSMODG00000014130)	ENSMODG00000013921	ENSMODG00000038072
Eutheria	DUPLICATION
Eutheria	DUPLICATION
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000157434 #11	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Carnivora	DUPLICATION
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.a #22
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.a #22
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.n #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.b #22	ENSGT00390000002752.w.a.a #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00950000186376	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Ursidae	ANCESTRAL SPECIES	15	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.n #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.a #22	ENSGT00390000002752.w.a.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00950000186376	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Ursus	DUPLICATION
Ursus	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.a.a #22
Polar bear	MODERN SPECIES	192	PRPF8 (ENSUMAG00000009385)	TLCD2 (ENSUMAG00000009359)	WDR81 (ENSUMAG00000009351)	SERPINF2 (ENSUMAG00000009348)	SERPINF1 (ENSUMAG00000009346)	ENSUMAG00000009343	SMYD4 (ENSUMAG00000009336)	RPA1 (ENSUMAG00000009328)	RTN4RL1 (ENSUMAG00000009327)	DPH1 (ENSUMAG00000009318)	OVCA2 (ENSUMAG00000009315)	SMG6 (ENSUMAG00000009306)	SRR (ENSUMAG00000009304)	TSR1 (ENSUMAG00000009294)	SGSM2 (ENSUMAG00000009267)	ENSUMAG00000009252 #22	METTL16 (ENSUMAG00000009246)	PAFAH1B1 (ENSUMAG00000009216)	CLUH (ENSUMAG00000009164)	ENSUMAG00000009140	RAP1GAP2 (ENSUMAG00000008355)	ENSUMAG00000008243	ENSUMAG00000008241	ENSUMAG00000008232	OR1G1 (ENSUMAG00000008231)	ENSUMAG00000008228	ENSUMAG00000008227	ENSUMAG00000008223	ENSUMAG00000008220	ENSUMAG00000008215	ENSUMAG00000008213
American black bear	MODERN SPECIES	433							ENSUAMG00000025141	OVCA2 (ENSUAMG00000025144)	HIC1 (ENSUAMG00000025149)	SMG6 (ENSUAMG00000025152)	SRR (ENSUAMG00000025156)	TSR1 (ENSUAMG00000025160)	ENSUAMG00000025178	MNT (ENSUAMG00000025184)	METTL16 (ENSUAMG00000025187)	ENSUAMG00000025188 #22
Ursus	ANCESTRAL SPECIES	17	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000016760.c.a.a.a.a.a.a	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.n #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.b #22	ENSGT00390000002752.w.a.a.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00950000186376	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
American black bear	MODERN SPECIES	7433															ENSUAMG00000003322 #21	ENSUAMG00000003315 #22	ENSUAMG00000003310
Giant Panda	MODERN SPECIES	18	PPP2R1B (ENSAMEG00000004233)	ALG9 (ENSAMEG00000004206) #8	FDXACB1 (ENSAMEG00000030125) #9	HSPB2 (ENSAMEG00000004173) #12	CRYAB (ENSAMEG00000004179) #11	ENSAMEG00000009886	DIXDC1 (ENSAMEG00000004124) #14	DLAT (ENSAMEG00000004089) #15	PIH1D2 (ENSAMEG00000004081) #16	NKAPD1 (ENSAMEG00000026733)	ENSAMEG00000026515	SDHD (ENSAMEG00000004066) #18	IL18 (ENSAMEG00000004043) #19	TEX12 (ENSAMEG00000004041) #20	BCO2 (ENSAMEG00000003984) #21	ENSAMEG00000003968 #22	ENSAMEG00000003962	NCAM1 (ENSAMEG00000016517) #24	TTC12 (ENSAMEG00000016494)	ANKK1 (ENSAMEG00000006163) #26	DRD2 (ENSAMEG00000006143) #27	ZW10 (ENSAMEG00000006049) #29	CLDN25 (ENSAMEG00000019404)	USP28 (ENSAMEG00000006005)	HTR3B (ENSAMEG00000005986)	HTR3A (ENSAMEG00000013316)	ENSAMEG00000013292	NNMT (ENSAMEG00000013281)	C11orf71 (ENSAMEG00000019702)	RBM7 (ENSAMEG00000013276)	REXO2 (ENSAMEG00000013263)
Mustelinae	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.a #22
Ferret	MODERN SPECIES	170	ENSMPUG00000005594	ABHD3 (ENSMPUG00000005583)	ENSMPUG00000005567	ESCO1 (ENSMPUG00000005547)	GREB1L (ENSMPUG00000005516)	ENSMPUG00000019884	ROCK1 (ENSMPUG00000005488)	USP14 (ENSMPUG00000005469)	THOC1 (ENSMPUG00000005448)	COLEC12 (ENSMPUG00000005437)	CLUL1 (ENSMPUG00000005429)	TYMS (ENSMPUG00000005419)	ENOSF1 (ENSMPUG00000005407)	YES1 (ENSMPUG00000005394)	ADCYAP1 (ENSMPUG00000005386)	ENSMPUG00000019883 #22	METTL4 (ENSMPUG00000005375)	NDC80 (ENSMPUG00000005356)	SMCHD1 (ENSMPUG00000005190)	EMILIN2 (ENSMPUG00000005128)	LPIN2 (ENSMPUG00000005110)	MYOM1 (ENSMPUG00000005090)	MYL12A (ENSMPUG00000005057)	ENSMPUG00000005055	MYL12B (ENSMPUG00000005011)	TGIF1 (ENSMPUG00000005004)	DLGAP1 (ENSMPUG00000004995)	ZBTB14 (ENSMPUG00000004990)	EPB41L3 (ENSMPUG00000004981)	ENSMPUG00000019882	L3MBTL4 (ENSMPUG00000004964)
Felidae	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.a #22
Panthera	ANCESTRAL SPECIES	6	ENSGT00390000018531	ENSGT00940000158906	ENSGT00940000154896.e	ENSGT00940000154896.f	ENSGT00940000157657	ENSGT00440000033589.d	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000161608.g.a	ENSGT00940000153875.c.n	ENSGT00530000063884.a	ENSGT00940000158616	ENSGT01030000234613.a.a	ENSGT00940000154486.a.b	ENSGT00940000160982	ENSGT00390000002752.w.a.a #22	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A
Tiger	MODERN SPECIES	259										ENSPTIG00000007627	CEP72 (ENSPTIG00000007465)	SLC9A3 (ENSPTIG00000007395)	EXOC3 (ENSPTIG00000007234)	AHRR (ENSPTIG00000007141)	PDCD6 (ENSPTIG00000006915)	ENSPTIG00000006876 #22	SDHA (ENSPTIG00000006463)	CCDC127 (ENSPTIG00000006397)	LRRC14B (ENSPTIG00000006359)	PLEKHG4B (ENSPTIG00000006299)
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00390000018531	ENSGT00940000158906	ENSGT00940000154896.e	ENSGT00940000154896.f	ENSGT00940000157657	ENSGT00440000033589.d	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000161608.g.a	ENSGT00940000153875.c.n	ENSGT00530000063884.a	ENSGT00940000158616	ENSGT01030000234613.a.a	ENSGT00940000154486.a.b	ENSGT00940000160982	ENSGT00390000002752.w.a.a #22	ENSGT00910000144277	ENSGT00390000008818	ENSGT01030000234531.C	ENSGT00940000162507.A
lion	MODERN SPECIES		TERT (ENSPLOG00000003847)	SLC6A18 (ENSPLOG00000003576)	SLC6A19 (ENSPLOG00000003408)	SLC12A7 (ENSPLOG00000003362)	NKD2 (ENSPLOG00000003335)	TRIP13 (ENSPLOG00000003312)	BRD9 (ENSPLOG00000003277)	ENSPLOG00000003257	TPPP (ENSPLOG00000003226)	CEP72 (ENSPLOG00000003205)	SLC9A3 (ENSPLOG00000003168)	EXOC3 (ENSPLOG00000003127)	ENSPLOG00000003084	ENSPLOG00000003112	PDCD6 (ENSPLOG00000003034)	ENSPLOG00000002995 #22	SDHA (ENSPLOG00000002936)	CCDC127 (ENSPLOG00000002900)	LRRC14B (ENSPLOG00000002884)	PLEKHG4B (ENSPLOG00000002803)
leopard	MODERN SPECIES	228				ENSPPRG00000001565	SLC12A7 (ENSPPRG00000001609)	NKD2 (ENSPPRG00000001801)	TRIP13 (ENSPPRG00000001817)	BRD9 (ENSPPRG00000002004)	ENSPPRG00000002044	TPPP (ENSPPRG00000002056)	CEP72 (ENSPPRG00000002120)	SLC9A3 (ENSPPRG00000002356)	EXOC3 (ENSPPRG00000002370)	AHRR (ENSPPRG00000002696)	ENSPPRG00000002870	ENSPPRG00000002949 #22	SDHA (ENSPPRG00000003291)	CCDC127 (ENSPPRG00000003413)	LRRC14B (ENSPPRG00000003472)	PLEKHG4B (ENSPPRG00000003599)
Cat	MODERN SPECIES		SLC6A18 (ENSFCAG00000009542)	SLC6A19 (ENSFCAG00000009541)	SLC12A7 (ENSFCAG00000009540)	NKD2 (ENSFCAG00000029202)	TRIP13 (ENSFCAG00000009538)	BRD9 (ENSFCAG00000009535)	ENSFCAG00000009537	TPPP (ENSFCAG00000041042)	CEP72 (ENSFCAG00000002925)	SLC9A3 (ENSFCAG00000015433)	EXOC3 (ENSFCAG00000015431)	AHRR (ENSFCAG00000015430)	ENSFCAG00000047255	PDCD6 (ENSFCAG00000041352)	SDHA (ENSFCAG00000030558)	ENSFCAG00000034012 #22	CCDC127 (ENSFCAG00000027428)	LRRC14B (ENSFCAG00000008034)	PLEKHG4B (ENSFCAG00000008030)
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.b #22
Caniformia	ANCESTRAL SPECIES	17	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.b #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a
Canidae	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.b #22
Red fox	MODERN SPECIES	61	ENSVVUG00000015873	CFAP68 (ENSVVUG00000015875) #10	CRYAB (ENSVVUG00000015883) #11	ENSVVUG00000015896	HSPB2 (ENSVVUG00000015899) #12	C11orf52 (ENSVVUG00000015902) #13	DIXDC1 (ENSVVUG00000015914) #14	DLAT (ENSVVUG00000015934) #15	ENSVVUG00000015941 #16	ENSVVUG00000015945	ENSVVUG00000015949	SDHD (ENSVVUG00000015950) #18	IL18 (ENSVVUG00000015952) #19	TEX12 (ENSVVUG00000015963) #20	BCO2 (ENSVVUG00000015967) #21	PTS (ENSVVUG00000015979) #22	ENSVVUG00000015984	ENSVVUG00000015988	ENSVVUG00000016018	ENSVVUG00000016025	NCAM1 (ENSVVUG00000016037) #24	ENSVVUG00000016052 #23	TTC12 (ENSVVUG00000016067)	ANKK1 (ENSVVUG00000016115) #26	DRD2 (ENSVVUG00000016119) #27	ZW10 (ENSVVUG00000016132) #29	CLDN25 (ENSVVUG00000016173)	USP28 (ENSVVUG00000016186)	HTR3B (ENSVVUG00000016234)	HTR3A (ENSVVUG00000016249)	ZBTB16 (ENSVVUG00000016272)
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.n #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.b #22	ENSGT00390000002752.w.a.a #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00950000186376	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Mustelinae	ANCESTRAL SPECIES	24	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581.g #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.n #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00950000186376	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
American mink	DUPLICATION
American mink	DUPLICATION
American mink	MODERN SPECIES	71													IL18 (ENSNVIG00000007756) #19	TEX12 (ENSNVIG00000007722) #20	BCO2 (ENSNVIG00000007532) #21	ENSNVIG00000007520 #22	ENSNVIG00000007511	NCAM1 (ENSNVIG00000007193) #24	TTC12 (ENSNVIG00000007116)	DRD2 (ENSNVIG00000007005) #27	TMPRSS5 (ENSNVIG00000006912) #28	ZW10 (ENSNVIG00000006860) #29	CLDN25 (ENSNVIG00000006850)	USP28 (ENSNVIG00000006761)	HTR3B (ENSNVIG00000006702)	HTR3A (ENSNVIG00000006682)	ZBTB16 (ENSNVIG00000006639)	NNMT (ENSNVIG00000006629)	C11orf71 (ENSNVIG00000006624)	ENSNVIG00000006605	REXO2 (ENSNVIG00000006589)
American mink	MODERN SPECIES	23	LRIT3 (ENSNVIG00000008664)	RRH (ENSNVIG00000008643)	GAR1 (ENSNVIG00000008616)	ENSNVIG00000008605	PLA2G12A (ENSNVIG00000008582)	CASP6 (ENSNVIG00000008531)	MCUB (ENSNVIG00000008506)	SEC24B (ENSNVIG00000007302)	COL25A1 (ENSNVIG00000006813)	ETNPPL (ENSNVIG00000006726)	OSTC (ENSNVIG00000006710)	ENSNVIG00000006689	Lef-1 (ENSNVIG00000006522)	ENSNVIG00000006476	CYP2U1 (ENSNVIG00000006464)	ENSNVIG00000006446 #22	ENSNVIG00000006431	SGMS2 (ENSNVIG00000006393)	PAPSS1 (ENSNVIG00000006373)	DKK2 (ENSNVIG00000006330)	GIMD1 (ENSNVIG00000006313)	AIMP1 (ENSNVIG00000006299)	TBCK (ENSNVIG00000006152)	NPNT (ENSNVIG00000005955)	GSTCD (ENSNVIG00000005920)	INT12 (ENSNVIG00000005902)	ENSNVIG00000005878	ENSNVIG00000005869	ENSNVIG00000005750	TET2 (ENSNVIG00000005706)	ENSNVIG00000005696
American mink	MODERN SPECIES	75	KIF11 (ENSNVIG00000020900)	HHEX (ENSNVIG00000021194)	ENSNVIG00000021218	ENSNVIG00000021227	ENSNVIG00000021232	MSRA (ENSNVIG00000021240)	ENSNVIG00000021254	ENSNVIG00000021272	PRSS55 (ENSNVIG00000021279)	ENSNVIG00000021290	C8orf74 (ENSNVIG00000021303)	SOX7 (ENSNVIG00000021308)	PINX1 (ENSNVIG00000021310)	XKR6 (ENSNVIG00000021321)	MTMR9 (ENSNVIG00000021357)	ENSNVIG00000021375 #22	ENSNVIG00000021380	FAM167A (ENSNVIG00000021387)	BLK (ENSNVIG00000021406)	GATA4 (ENSNVIG00000021434)	NEIL2 (ENSNVIG00000021450)	FDFT1 (ENSNVIG00000021462)	CTSB (ENSNVIG00000021548)	ENSNVIG00000021578	DEFB134 (ENSNVIG00000021584)	ENSNVIG00000021588	ENSNVIG00000021596
Ursidae	ANCESTRAL SPECIES	15	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.n #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.a #22	ENSGT00390000002752.w.a.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00950000186376	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Giant Panda	MODERN SPECIES	13	SLC6A3 (ENSAMEG00000010690)	CLPTM1L (ENSAMEG00000010640)	TERT (ENSAMEG00000010578)	SLC6A18 (ENSAMEG00000010403)	ENSAMEG00000010356	ENSAMEG00000008267	BRD9 (ENSAMEG00000008289)	ENSAMEG00000029733	ENSAMEG00000008326	CEP72 (ENSAMEG00000008333)	SLC9A3 (ENSAMEG00000008339)	EXOC3 (ENSAMEG00000008403)	AHRR (ENSAMEG00000008443)	PDCD6 (ENSAMEG00000008464)	SDHA (ENSAMEG00000008480)	ENSAMEG00000027043 #22	CCDC127 (ENSAMEG00000008532)	LRRC14B (ENSAMEG00000008539)	ENSAMEG00000008542
Ursus	ANCESTRAL SPECIES	17	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000016760.c.a.a.a.a.a.a	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.n #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.b #22	ENSGT00390000002752.w.a.a.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00950000186376	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b
Polar bear	MODERN SPECIES	166	ALG9 (ENSUMAG00000006965) #8	FDXACB1 (ENSUMAG00000006940) #9	CFAP68 (ENSUMAG00000006938) #10	HSPB2 (ENSUMAG00000006937) #12	CRYAB (ENSUMAG00000006933) #11	ENSUMAG00000006931	C11orf52 (ENSUMAG00000006928) #13	DIXDC1 (ENSUMAG00000006914) #14	DLAT (ENSUMAG00000006906) #15	PIH1D2 (ENSUMAG00000006904) #16	NKAPD1 (ENSUMAG00000006902)	ENSUMAG00000006900	IL18 (ENSUMAG00000006894) #19	TEX12 (ENSUMAG00000006889) #20	BCO2 (ENSUMAG00000006877) #21	ENSUMAG00000006872 #22	ENSUMAG00000006868	ENSUMAG00000006862	ENSUMAG00000006842 #23	NCAM1 (ENSUMAG00000004545) #24	TTC12 (ENSUMAG00000003948)	DRD2 (ENSUMAG00000003885) #27	TMPRSS5 (ENSUMAG00000003853) #28	ZW10 (ENSUMAG00000003834) #29	CLDN25 (ENSUMAG00000003831)	USP28 (ENSUMAG00000003821)	HTR3B (ENSUMAG00000003795)	ENSUMAG00000003784	ZBTB16 (ENSUMAG00000003782)	NNMT (ENSUMAG00000003777)	C11orf71 (ENSUMAG00000003775)
American black bear	MODERN SPECIES	1498											SLC9A3 (ENSUAMG00000022235)	EXOC3 (ENSUAMG00000022234)	ENSUAMG00000022233	ENSUAMG00000022232	PDCD6 (ENSUAMG00000022231)	ENSUAMG00000022230 #22	SDHA (ENSUAMG00000022229)	CCDC127 (ENSUAMG00000022228)	LRRC14B (ENSUAMG00000022227)	PLEKHG4B (ENSUAMG00000022226)
Felidae	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.b #22
Panthera	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.b #22
Panthera_a	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a.b #22
leopard	MODERN SPECIES	3	DAPP1 (ENSPPRG00000007332)	C4orf54 (ENSPPRG00000007722)	MTTP (ENSPPRG00000009472)	TRMT10A (ENSPPRG00000009807)	C4orf17 (ENSPPRG00000010084)	ENSPPRG00000011626	ENSPPRG00000012847	ADH4 (ENSPPRG00000013923)	ADH5 (ENSPPRG00000016319)	METAP1 (ENSPPRG00000017905)	ENSPPRG00000019904	ENSPPRG00000020175	TSPAN5 (ENSPPRG00000024276)	RAP1GDS1 (ENSPPRG00000001256)	ENSPPRG00000001628	ENSPPRG00000019661 #22
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a
Artiodactyla_b	ANCESTRAL SPECIES	131															ENSGT01020000231542	ENSGT00390000002752.w.a #22
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	33	ENSGT00940000161381.f	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000154386.ob.c.b.a.a	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b
Percora_a	ANCESTRAL SPECIES	15	ENSGT00940000161381.f	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000154386.ob.c.b.a.a	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000161381.f	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000154386.ob.c.b.a.a	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b
Bovinae	ANCESTRAL SPECIES	12	ENSGT00940000161381.f.a	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000154386.ob.c.b.a.a	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b
Bos	ANCESTRAL SPECIES	12	ENSGT00940000161381.f.a	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000154386.ob.c.b.a.a	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000161381.f.a	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000154386.ob.c.b.a.a	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b	ENSGT00940000162073
Domestic yak	MODERN SPECIES	5	ENSBGRG00000011554	ENSBGRG00000011770	ENSBGRG00000011906	ENSBGRG00000012007	F13B (ENSBGRG00000012111)	CFHR5 (ENSBGRG00000012431)	ENSBGRG00000012633	ENSBGRG00000014514	ZBTB41 (ENSBGRG00000014539)	ENSBGRG00000014587	DENND1B (ENSBGRG00000014882)	C1orf53 (ENSBGRG00000015832)	LHX9 (ENSBGRG00000015877)	NEK7 (ENSBGRG00000016159)	ENSBGRG00000016214	ENSBGRG00000016238 #22	ENSBGRG00000016311	ENSBGRG00000016375	ENSBGRG00000016404	PTPRC (ENSBGRG00000016494)	NR5A2 (ENSBGRG00000017904)	ZNF281 (ENSBGRG00000018299)	KIF14 (ENSBGRG00000018354)	DDX59 (ENSBGRG00000019271)	CAMSAP2 (ENSBGRG00000019601)	INAVA (ENSBGRG00000022093)	KIF21B (ENSBGRG00000022375)	CACNA1S (ENSBGRG00000024684)	ASCL5 (ENSBGRG00000025013)	TMEM9 (ENSBGRG00000025018)	ENSBGRG00000025040
Wild yak	MODERN SPECIES	888				ENSBMUG00000015269	ENSBMUG00000015284	ENSBMUG00000015295	ENSBMUG00000015310	F13B (ENSBMUG00000015339)	CFHR5 (ENSBMUG00000015365)	ASPM (ENSBMUG00000015480)	ZBTB41 (ENSBMUG00000015518)	CRB1 (ENSBMUG00000015537)	DENND1B (ENSBMUG00000015613)	LHX9 (ENSBMUG00000015670)	NEK7 (ENSBMUG00000015692)	ENSBMUG00000015710 #22	ATP6V1G3 (ENSBMUG00000015718)	ENSBMUG00000015731
Bos_b	ANCESTRAL SPECIES	27	ENSGT01100000263481.n.a.a.a.b.a.b.a.b.a.a.b.b.a.b	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000154386.ob.c.b.a.a	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b
Hybrid Bos Indicus	MODERN SPECIES	7	ENSBIXG00005022235	ENSBIXG00005022198	ENSBIXG00005022130	ENSBIXG00005003754	ENSBIXG00005003751	F13B (ENSBIXG00005022083)	CFHR5 (ENSBIXG00005022052)	ASPM (ENSBIXG00005022034)	ZBTB41 (ENSBIXG00005021997)	CRB1 (ENSBIXG00005021958)	ENSBIXG00005021845	DENND1B (ENSBIXG00005002615)	C1orf53 (ENSBIXG00005021701)	LHX9 (ENSBIXG00005021664)	NEK7 (ENSBIXG00005003641)	ENSBIXG00005021567 #22	ENSBIXG00005021525	ENSBIXG00005020976	PTPRC (ENSBIXG00005021465)	NR5A2 (ENSBIXG00005020884)	ZNF281 (ENSBIXG00005020761)	KIF14 (ENSBIXG00005003504)	ENSBIXG00005020524	DDX59 (ENSBIXG00005020510)	CAMSAP2 (ENSBIXG00005020456)	ENSBIXG00005020421	GPR25 (ENSBIXG00005020412)	INAVA (ENSBIXG00005020402)	ENSBIXG00005020381	KIF21B (ENSBIXG00005020306)	CACNA1S (ENSBIXG00005005533)
Cow	MODERN SPECIES	7	CD46 (ENSBTAG00000005397)	ENSBTAG00000052620	ENSBTAG00000052901	ENSBTAG00000050070	ENSBTAG00000030910	ENSBTAG00000048618	F13B (ENSBTAG00000000070)	CFHR5 (ENSBTAG00000038171)	ASPM (ENSBTAG00000007860)	ZBTB41 (ENSBTAG00000002291)	CRB1 (ENSBTAG00000008944)	DENND1B (ENSBTAG00000012433)	C16H1orf53 (ENSBTAG00000051004)	LHX9 (ENSBTAG00000013499)	NEK7 (ENSBTAG00000016943)	ENSBTAG00000049638 #22	ATP6V1G3 (ENSBTAG00000019890)	PTPRC (ENSBTAG00000023144)	ENSBTAG00000046345	NR5A2 (ENSBTAG00000009265)	ZNF281 (ENSBTAG00000047428)	KIF14 (ENSBTAG00000021874)	DDX59 (ENSBTAG00000020563)	CAMSAP2 (ENSBTAG00000008153)	GPR25 (ENSBTAG00000053928)	INAVA (ENSBTAG00000047972)	ENSBTAG00000053707	KIF21B (ENSBTAG00000047274)	CACNA1S (ENSBTAG00000047491)	TMEM9 (ENSBTAG00000051448)	IGFN1 (ENSBTAG00000046177)
American bison	MODERN SPECIES	3369			ENSBBBG00000009220	ENSBBBG00000009221	ENSBBBG00000001432	F13B (ENSBBBG00000009222)	CFHR5 (ENSBBBG00000009223)	ASPM (ENSBBBG00000009224)	ZBTB41 (ENSBBBG00000009225)	CRB1 (ENSBBBG00000009226)	ENSBBBG00000009227	C1orf53 (ENSBBBG00000009228)	LHX9 (ENSBBBG00000000148)	ENSBBBG00000001434	NEK7 (ENSBBBG00000009230)	ENSBBBG00000009231 #22	ATP6V1G3 (ENSBBBG00000009232)	ENSBBBG00000001435	PTPRC (ENSBBBG00000009234)	NR5A2 (ENSBBBG00000009237)	ZNF281 (ENSBBBG00000001436)	KIF14 (ENSBBBG00000009239)	DDX59 (ENSBBBG00000001437)	CAMSAP2 (ENSBBBG00000001438)	KIF21B (ENSBBBG00000009240)	CACNA1S (ENSBBBG00000009241)	TMEM9 (ENSBBBG00000009242)	ENSBBBG00000009243	PKP1 (ENSBBBG00000009244)	ENSBBBG00000009245	CYB5R1 (ENSBBBG00000009246)
Caprinae	ANCESTRAL SPECIES	12	ENSGT00390000008414	ENSGT00940000161381.f	ENSGT00940000161381.e.a	ENSGT00940000161381.e.b	ENSGT00940000166286	ENSGT00940000163634	ENSGT00940000154967.b	ENSGT00940000154386.ob.c.a	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548.e	ENSGT00940000158821	ENSGT00940000156725	ENSGT00390000002752.w.a.c #22	ENSGT00940000160882	ENSGT01040000241447	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b	ENSGT01050000244888.a.b	ENSGT00940000154102.a	ENSGT00940000163702	ENSGT00940000159650	ENSGT00940000158289.b	ENSGT00940000163864	ENSGT00390000000819.b
Goat	MODERN SPECIES	7	PLXNA2 (ENSCHIG00000018998)	ENSCHIG00000022477	CD34 (ENSCHIG00000006308)	ENSCHIG00000021641	ENSCHIG00000010028	F13B (ENSCHIG00000021931)	CFHR5 (ENSCHIG00000010286)	ASPM (ENSCHIG00000009909)	ZBTB41 (ENSCHIG00000011632)	CRB1 (ENSCHIG00000023383)	ENSCHIG00000023100	DENND1B (ENSCHIG00000010797)	ENSCHIG00000005784	LHX9 (ENSCHIG00000018168)	NEK7 (ENSCHIG00000014879)	ENSCHIG00000024004 #22	ATP6V1G3 (ENSCHIG00000010287)	PTPRC (ENSCHIG00000022485)	NR5A2 (ENSCHIG00000012775)	ZNF281 (ENSCHIG00000009547)	KIF14 (ENSCHIG00000019535)	DDX59 (ENSCHIG00000014558)	CAMSAP2 (ENSCHIG00000020040)	INAVA (ENSCHIG00000013553)	ENSCHIG00000020121	CACNA1S (ENSCHIG00000013440)	TMEM9 (ENSCHIG00000017714)	ENSCHIG00000021640	PKP1 (ENSCHIG00000023602)	ENSCHIG00000025176	CYB5R1 (ENSCHIG00000014622)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	5	CD34 (ENSCHYG00000021408)	ENSCHYG00000021642	ENSCHYG00000022214	ENSCHYG00000022352	ENSCHYG00000022399	ENSCHYG00000022439	F13B (ENSCHYG00000022496)	CFHR5 (ENSCHYG00000022635)	ASPM (ENSCHYG00000022717)	ZBTB41 (ENSCHYG00000023138)	CRB1 (ENSCHYG00000023193)	DENND1B (ENSCHYG00000023290)	ENSCHYG00000023653	LHX9 (ENSCHYG00000023703)	NEK7 (ENSCHYG00000023853)	ENSCHYG00000023961 #22	ATP6V1G3 (ENSCHYG00000024007)	PTPRC (ENSCHYG00000004706)	ENSCHYG00000004736	NR5A2 (ENSCHYG00000004885)	ZNF281 (ENSCHYG00000004905)	KIF14 (ENSCHYG00000004913)	DDX59 (ENSCHYG00000004960)	CAMSAP2 (ENSCHYG00000005028)	GPR25 (ENSCHYG00000005126)	ENSCHYG00000005160	KIF21B (ENSCHYG00000005305)	CACNA1S (ENSCHYG00000005777)	ASCL5 (ENSCHYG00000005879)	TMEM9 (ENSCHYG00000005897)	ENSCHYG00000005938
Yarkand deer	MODERN SPECIES	1323	VSIG4 (ENSCHYG00000021785)	ENSCHYG00000015563	ENSCHYG00000015632	LAS1L (ENSCHYG00000015672)	ZC3H12B (ENSCHYG00000015865)	ZC4H2 (ENSCHYG00000016079)	ENSCHYG00000016226	MTMR8 (ENSCHYG00000016301)	ASB12 (ENSCHYG00000016887)	AMER1 (ENSCHYG00000016928)	ENSCHYG00000016974	SPIN4 (ENSCHYG00000017679)	ENSCHYG00000017687	ENSCHYG00000017717	ENSCHYG00000017756	ENSCHYG00000017806 #22	ENSCHYG00000017826	ENSCHYG00000017857	DIPK2B (ENSCHYG00000018092)	ENSCHYG00000018171	KDM6A (ENSCHYG00000018260)	DUSP21 (ENSCHYG00000019815)	FUNDC1 (ENSCHYG00000019848)	ENSCHYG00000019917	ENSCHYG00000019980	NDP (ENSCHYG00000019992)	MAOB (ENSCHYG00000020035)	MAOA (ENSCHYG00000020167)	ENSCHYG00000020373	ENSCHYG00000020396	ENSCHYG00000020427
Pecora	ANCESTRAL SPECIES	158															ENSGT01020000231542	ENSGT00390000002752.w.a.d #22
Percora_a	ANCESTRAL SPECIES	162															ENSGT01020000231542	ENSGT00390000002752.w.a.d #22
Bovidae	ANCESTRAL SPECIES	153															ENSGT01020000231542	ENSGT00390000002752.w.a.d #22
Bovinae	ANCESTRAL SPECIES	21	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b.a #22	ENSGT01020000231542	ENSGT00390000002752.w.a.d #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962
Bos	ANCESTRAL SPECIES	14	ENSGT00950000183172.A.m	ENSGT00390000018018.ab	ENSGT00950000182950.D	ENSGT00920000150750	ENSGT00940000159986	ENSGT00390000000999	ENSGT01020000230351.D.a.a.b.k.b	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.b.a.a.a.a	ENSGT01020000230351.D.a.a.b.l	ENSGT01020000230351.D.b	ENSGT00940000161828	ENSGT00390000018674	ENSGT00390000012719.b	ENSGT00940000154717	ENSGT00390000015354.d	ENSGT00390000002752.w.a.d #22	ENSGT00940000159285	ENSGT00390000007848.b	ENSGT00940000158903	ENSGT00940000154575.a	ENSGT00530000063474.B.e.a	ENSGT00390000004147	ENSGT00390000013370	ENSGT00390000002172.B	ENSGT00940000158691	ENSGT00390000018074	ENSGT00390000008994	ENSGT00940000162236	ENSGT00390000007237	ENSGT01080000257672	ENSGT00940000155165
Bos_a	ANCESTRAL SPECIES	14	ENSGT00950000183172.A.n	ENSGT00390000018018.ab	ENSGT00950000182950.D	ENSGT00920000150750	ENSGT00940000159986	ENSGT00390000000999	ENSGT01020000230351.D.a.a.b.k.b	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.b.a.a.a.a	ENSGT01020000230351.D.a.a.b.l	ENSGT01020000230351.D.b	ENSGT00940000161828	ENSGT00390000018674	ENSGT00390000012719.b	ENSGT00940000154717	ENSGT00390000015354.d	ENSGT00390000002752.w.a.d #22	ENSGT00940000159285	ENSGT00390000007848.b	ENSGT00940000158903	ENSGT00940000154575.a	ENSGT00530000063474.B.e.a	ENSGT00390000004147	ENSGT00390000013370	ENSGT00390000002172.B	ENSGT00940000158691	ENSGT00390000018074	ENSGT00390000008994	ENSGT00940000162236	ENSGT00390000007237	ENSGT01080000257672	ENSGT00940000155165
Wild yak	MODERN SPECIES	1694										P2RX4 (ENSBMUG00000018567)	CAMKK2 (ENSBMUG00000018470)	ANAPC5 (ENSBMUG00000018310)	RNF34 (ENSBMUG00000018277)	KDM2B (ENSBMUG00000018216)	ORAI1 (ENSBMUG00000018097)	ENSBMUG00000018085 #22	MORN3 (ENSBMUG00000018070)	TMEM120B (ENSBMUG00000018048)	RHOF (ENSBMUG00000018018)	SETD1B (ENSBMUG00000017978)	HPD (ENSBMUG00000017895)	PSMD9 (ENSBMUG00000017866)	CFAP251 (ENSBMUG00000017827)	BCL7A (ENSBMUG00000017760)	MLXIP (ENSBMUG00000017736)	ENSBMUG00000017703	LRRC43 (ENSBMUG00000017683)	ENSBMUG00000017617	DIABLO (ENSBMUG00000017596)	ENSBMUG00000017551	VPS33A (ENSBMUG00000017540)
Bos_b	ANCESTRAL SPECIES	13	ENSGT00390000012669	ENSGT00940000154512.b	ENSGT00950000183172.A.m	ENSGT00390000018018.ab	ENSGT00950000182950.D	ENSGT00920000150750	ENSGT00940000159986	ENSGT00390000000999	ENSGT01020000230351.D.a.a.b.l	ENSGT01020000230351.D.b	ENSGT00940000161828	ENSGT00390000018674	ENSGT00390000012719.b	ENSGT00940000154717	ENSGT00390000015354.d	ENSGT00390000002752.w.a.d #22	ENSGT00940000159285	ENSGT00390000007848.b	ENSGT00940000158903	ENSGT00940000154575.a	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.b.b	ENSGT00530000063474.B.e.a	ENSGT00390000004147	ENSGT00390000013370	ENSGT00390000002172.B	ENSGT00940000158691	ENSGT00390000018074	ENSGT00390000008994	ENSGT00940000162236	ENSGT00390000007237	ENSGT01080000257672
Cow	MODERN SPECIES	8	FAM216A (ENSBTAG00000022067)	GPN3 (ENSBTAG00000005347)	ENSBTAG00000053945	ARPC3 (ENSBTAG00000005345)	ANAPC7 (ENSBTAG00000016675)	ENSBTAG00000052539	ATP2A2 (ENSBTAG00000001398)	IFT81 (ENSBTAG00000020584)	P2RX7 (ENSBTAG00000008948)	P2RX4 (ENSBTAG00000010812)	CAMKK2 (ENSBTAG00000010815)	ANAPC5 (ENSBTAG00000003092)	RNF34 (ENSBTAG00000002315)	KDM2B (ENSBTAG00000002328)	ORAI1 (ENSBTAG00000004457)	ENSBTAG00000006484 #22	MORN3 (ENSBTAG00000004458)	TMEM120B (ENSBTAG00000009602)	RHOF (ENSBTAG00000032534)	SETD1B (ENSBTAG00000004172)	ENSBTAG00000052582	HPD (ENSBTAG00000004175)	PSMD9 (ENSBTAG00000004179)	CFAP251 (ENSBTAG00000004187)	BCL7A (ENSBTAG00000032517)	MLXIP (ENSBTAG00000004189)	ENSBTAG00000049892	LRRC43 (ENSBTAG00000004192)	B3GNT4 (ENSBTAG00000004197)	DIABLO (ENSBTAG00000004199)	ENSBTAG00000053397
American bison	MODERN SPECIES	3365					TLR7 (ENSBBBG00000011704)	TLR8 (ENSBBBG00000011702)	ENSBBBG00000002154	PIH1D2 (ENSBBBG00000011665) #16	NKAPD1 (ENSBBBG00000011646)	TIMM8B (ENSBBBG00000011628)	SDHD (ENSBBBG00000011615) #18	IL18 (ENSBBBG00000011592) #19	TEX12 (ENSBBBG00000011572) #20	BCO2 (ENSBBBG00000011550) #21	ENSBBBG00000011453	ENSBBBG00000002101 #22	ENSBBBG00000002096	NCAM1 (ENSBBBG00000011422) #24	TTC12 (ENSBBBG00000011240)	DRD2 (ENSBBBG00000011207) #27	TMPRSS5 (ENSBBBG00000011175) #28	ZW10 (ENSBBBG00000011100) #29	CLDN25 (ENSBBBG00000011089)	USP28 (ENSBBBG00000011084)	HTR3B (ENSBBBG00000011021)	HTR3A (ENSBBBG00000001979)	ZBTB16 (ENSBBBG00000010998)	ENSBBBG00000008488	C11orf71 (ENSBBBG00000001966)	RBM7 (ENSBBBG00000010981)	REXO2 (ENSBBBG00000010953)
Yarkand deer	MODERN SPECIES	2	RAB1A (ENSCHYG00000007988)	CEP68 (ENSCHYG00000007916)	SLC1A4 (ENSCHYG00000007819)	ENSCHYG00000007790	SERTAD2 (ENSCHYG00000007769)	ENSCHYG00000007734	AFTPH (ENSCHYG00000007630)	LGALSL (ENSCHYG00000007576)	ENSCHYG00000007544	PELI1 (ENSCHYG00000007493)	ENSCHYG00000007473	VPS54 (ENSCHYG00000007200)	UGP2 (ENSCHYG00000007083)	ENSCHYG00000007056	MDH1 (ENSCHYG00000006887)	ENSCHYG00000006867 #22	WDPCP (ENSCHYG00000006760)	OTX1 (ENSCHYG00000006734)	EHBP1 (ENSCHYG00000006348)	TMEM17 (ENSCHYG00000006260)	B3GNT2 (ENSCHYG00000006215)	COMMD1 (ENSCHYG00000006201)	CCT4 (ENSCHYG00000005956)	ENSCHYG00000005899	FAM161A (ENSCHYG00000005790)	ENSCHYG00000005745	XPO1 (ENSCHYG00000005634)	ENSCHYG00000005607	USP34 (ENSCHYG00000005246)	C2orf74 (ENSCHYG00000012074)	LRRTM4 (ENSCHYG00000011968)
Suina	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Chacoan peccary	MODERN SPECIES	976	KCTD12 (ENSCWAG00000011852)	ENSCWAG00000011833	LMO7 (ENSCWAG00000021053)	UCHL3 (ENSCWAG00000021030)	COMMD6 (ENSCWAG00000021024)	TBC1D4 (ENSCWAG00000020719)	KLF12 (ENSCWAG00000020685)	KLF5 (ENSCWAG00000020676)	PIBF1 (ENSCWAG00000020656)	ENSCWAG00000020646	DIS3 (ENSCWAG00000020599)	BORA (ENSCWAG00000020566)	MZT1 (ENSCWAG00000020559)	DACH1 (ENSCWAG00000020355)	ENSCWAG00000020314	ENSCWAG00000020307 #22	KLHL1 (ENSCWAG00000020256)	ENSCWAG00000020188	PCDH9 (ENSCWAG00000020137)
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Primates	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Haplorrhini	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Tarsier	MODERN SPECIES	5782	ENSTSYG00000005024 #8	FDXACB1 (ENSTSYG00000029218) #9	CFAP68 (ENSTSYG00000005031) #10	CRYAB (ENSTSYG00000010935) #11	HSPB2 (ENSTSYG00000010934) #12	CUNH11orf52 (ENSTSYG00000028995) #13	DIXDC1 (ENSTSYG00000013175) #14	DLAT (ENSTSYG00000004301) #15	PIH1D2 (ENSTSYG00000004215) #16	CUNH11orf57 (ENSTSYG00000027812)	TIMM8B (ENSTSYG00000027982)	SDHD (ENSTSYG00000009832) #18	IL18 (ENSTSYG00000010526) #19	TEX12 (ENSTSYG00000006348) #20	BCO2 (ENSTSYG00000006350) #21	PTS (ENSTSYG00000032781) #22	ENSTSYG00000035285	ENSTSYG00000031968
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	4470																ENSETEG00000008145 #22	ENSETEG00000008149 #20
Tenrec	MODERN SPECIES	10733																ENSETEG00000004535 #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00390000002752.w.a #22
Hyrax	DUPLICATION
Hyrax	MODERN SPECIES	3737																ENSPCAG00000012241 #22
Hyrax	MODERN SPECIES	8715																ENSPCAG00000005392 #22
Eutheria	ANCESTRAL SPECIES	3	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Atlantogenata	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Elephant	MODERN SPECIES	383	GPR149 (ENSLAFG00000015353)	MME (ENSLAFG00000015397)	PLCH1 (ENSLAFG00000001248)	C3orf33 (ENSLAFG00000015059)	SLC33A1 (ENSLAFG00000015062)	GMPS (ENSLAFG00000012230)	ENSLAFG00000010095	KCNAB1 (ENSLAFG00000014751)	SSR3 (ENSLAFG00000014757)	TIPARP (ENSLAFG00000008210)	ENSLAFG00000029018	ENSLAFG00000014510	CCNL1 (ENSLAFG00000007715)	PTX3 (ENSLAFG00000011043)	VEPH1 (ENSLAFG00000011038)	ENSLAFG00000000904 #22	SHOX2 (ENSLAFG00000017816)	ENSLAFG00000017819	MLF1 (ENSLAFG00000010939)	LXN (ENSLAFG00000010951)	GFM1 (ENSLAFG00000010945)	RARRES1 (ENSLAFG00000010960)	MFSD1 (ENSLAFG00000008125)	ENSLAFG00000025702	IQCJ (ENSLAFG00000020769)	SCHIP1 (ENSLAFG00000018474)	IL12A (ENSLAFG00000001089)	IFT80 (ENSLAFG00000017096)	SMC4 (ENSLAFG00000017104)	TRIM59 (ENSLAFG00000020531)	KPNA4 (ENSLAFG00000005978)
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Euarchontoglires	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Euarchontoglires_A	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Glires	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Rodentia	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000040185	ENSHGLG00000046784	HSPB2 (ENSHGLG00000005078) #12	ENSHGLG00000039173 #13	ENSHGLG00000004681 #11	DIXDC1 (ENSHGLG00000005794) #14	DLAT (ENSHGLG00000006138) #15	PIH1D2 (ENSHGLG00000007197) #16	NKAPD1 (ENSHGLG00000007837)	ENSHGLG00000008635	SDHD (ENSHGLG00000049910) #18	IL18 (ENSHGLG00000042137) #19	TEX12 (ENSHGLG00000010997) #20	BCO2 (ENSHGLG00000016924) #21	ENSHGLG00000034310	ENSHGLG00000019377 #22	ENSHGLG00000034925	ENSHGLG00000021032	ENSHGLG00000014881 #23	NCAM1 (ENSHGLG00000017648) #24	TTC12 (ENSHGLG00000014236)	ANKK1 (ENSHGLG00000008816) #26	DRD2 (ENSHGLG00000048213) #27	ENSHGLG00000045960	ENSHGLG00000007066	TMPRSS5 (ENSHGLG00000018841) #28	ZW10 (ENSHGLG00000013323) #29	CLDN25 (ENSHGLG00000014340)	USP28 (ENSHGLG00000003749)	HTR3B (ENSHGLG00000045380)	HTR3A (ENSHGLG00000006163)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l
Eulipotyphla	ANCESTRAL SPECIES	340													ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22
Common shrew	MODERN SPECIES	3563													ENSSARG00000001923 #19	TEX12 (ENSSARG00000001938) #20	BCO2 (ENSSARG00000001948) #21	PTS (ENSSARG00000001975) #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Cetacea	ANCESTRAL SPECIES	4	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Dolphin	MODERN SPECIES	2913	FDXACB1 (ENSTTRG00000010496) #9	CFAP68 (ENSTTRG00000010498) #10	CRYAB (ENSTTRG00000010502) #11	ENSTTRG00000010504	HSPB2 (ENSTTRG00000010506) #12	CUNH11orf52 (ENSTTRG00000010508) #13	DIXDC1 (ENSTTRG00000010511) #14	DLAT (ENSTTRG00000010513) #15	ENSTTRG00000010516 #16	NKAPD1 (ENSTTRG00000010518)	TIMM8B (ENSTTRG00000010519)	SDHD (ENSTTRG00000010520) #18	IL18 (ENSTTRG00000010522) #19	TEX12 (ENSTTRG00000010523) #20	BCO2 (ENSTTRG00000010525) #21	PTS (ENSTTRG00000010526) #22
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Beluga whale	MODERN SPECIES	70	ALG9 (ENSDLEG00000009036) #8	FDXACB1 (ENSDLEG00000009085) #9	CUNH11orf1 (ENSDLEG00000009105) #10	CRYAB (ENSDLEG00000009122) #11	ENSDLEG00000009135	HSPB2 (ENSDLEG00000009146) #12	C11orf52 (ENSDLEG00000009152) #13	DIXDC1 (ENSDLEG00000009182) #14	DLAT (ENSDLEG00000009382) #15	PIH1D2 (ENSDLEG00000009414) #16	NKAPD1 (ENSDLEG00000009433)	TIMM8B (ENSDLEG00000009448)	TEX12 (ENSDLEG00000009468) #18	IL18 (ENSDLEG00000009519) #19	BCO2 (ENSDLEG00000009532) #21	PTS (ENSDLEG00000009558) #22	ENSDLEG00000009580	NCAM1 (ENSDLEG00000009612) #24	TTC12 (ENSDLEG00000009663)	ANKK1 (ENSDLEG00000009758) #26	DRD2 (ENSDLEG00000009777) #27	ENSDLEG00000009835 #28	ZW10 (ENSDLEG00000010120) #29	USP28 (ENSDLEG00000010223)	HTR3B (ENSDLEG00000010470)	HTR3A (ENSDLEG00000010503)	ZBTB16 (ENSDLEG00000010544)	ENSDLEG00000010562	NNMT (ENSDLEG00000010577)	CUNH11orf71 (ENSDLEG00000010586)	RBM7 (ENSDLEG00000010595)
Narwhal	MODERN SPECIES	314	FDXACB1 (ENSMMNG00015020533) #9	CFAP68 (ENSMMNG00015020453) #10	CRYAB (ENSMMNG00015020423) #11	ENSMMNG00015020408	HSPB2 (ENSMMNG00015020390) #12	C11orf52 (ENSMMNG00015020371) #13	DIXDC1 (ENSMMNG00015020316) #14	DLAT (ENSMMNG00015020268) #15	PIH1D2 (ENSMMNG00015020249) #16	NKAPD1 (ENSMMNG00015020221)	TIMM8B (ENSMMNG00015020194)	SDHD (ENSMMNG00015020131) #18	IL18 (ENSMMNG00015020079) #19	TEX12 (ENSMMNG00015020054) #20	BCO2 (ENSMMNG00015019968) #21	PTS (ENSMMNG00015019928) #22	ENSMMNG00015019896	NCAM1 (ENSMMNG00015019426) #24	TTC12 (ENSMMNG00015019038)	ANKK1 (ENSMMNG00015018978) #26	DRD2 (ENSMMNG00015018913) #27	TMPRSS5 (ENSMMNG00015018667) #28	ZW10 (ENSMMNG00015018560) #29	USP28 (ENSMMNG00015018348)	HTR3B (ENSMMNG00015018251)	HTR3A (ENSMMNG00015018195)	ZBTB16 (ENSMMNG00015018162)	NNMT (ENSMMNG00015018136)	C11orf71 (ENSMMNG00015018124)	ENSMMNG00015018102	REXO2 (ENSMMNG00015017974)
Vaquita	MODERN SPECIES	19	FDXACB1 (ENSPSNG00000006868) #9	CFAP68 (ENSPSNG00000006813) #10	ENSPSNG00000008642	CRYAB (ENSPSNG00000008589) #11	HSPB2 (ENSPSNG00000008568) #12	C11orf52 (ENSPSNG00000008533) #13	DIXDC1 (ENSPSNG00000008416) #14	DLAT (ENSPSNG00000008272) #15	PIH1D2 (ENSPSNG00000008227) #16	NKAPD1 (ENSPSNG00000008194)	TIMM8B (ENSPSNG00000008160)	SDHD (ENSPSNG00000008077) #18	IL18 (ENSPSNG00000008022) #19	TEX12 (ENSPSNG00000007981) #20	BCO2 (ENSPSNG00000007808) #21	PTS (ENSPSNG00000007745) #22	ENSPSNG00000007674	ENSPSNG00000007635 #23	NCAM1 (ENSPSNG00000006944) #24	TTC12 (ENSPSNG00000006695)	ANKK1 (ENSPSNG00000006624) #26	DRD2 (ENSPSNG00000006528) #27	TMPRSS5 (ENSPSNG00000006210) #28	ZW10 (ENSPSNG00000006107) #29	USP28 (ENSPSNG00000005964)	HTR3B (ENSPSNG00000005800)	HTR3A (ENSPSNG00000005709)	ZBTB16 (ENSPSNG00000005661)	NNMT (ENSPSNG00000005634)	ENSPSNG00000005613	REXO2 (ENSPSNG00000005534)
Sperm whale	MODERN SPECIES	7	FDXACB1 (ENSPCTG00005022136) #9	C16H11orf1 (ENSPCTG00005022131) #10	ENSPCTG00005022123	CRYAB (ENSPCTG00005022116) #11	HSPB2 (ENSPCTG00005022105) #12	C16H11orf52 (ENSPCTG00005022098) #13	DIXDC1 (ENSPCTG00005022047) #14	DLAT (ENSPCTG00005022000) #15	PIH1D2 (ENSPCTG00005021982) #16	NKAPD1 (ENSPCTG00005021974)	TIMM8B (ENSPCTG00005021966)	SDHD (ENSPCTG00005021936) #18	IL18 (ENSPCTG00005021887) #19	TEX12 (ENSPCTG00005021869) #20	BCO2 (ENSPCTG00005021846) #21	PTS (ENSPCTG00005021826) #22	NCAM1 (ENSPCTG00005021261) #24	TTC12 (ENSPCTG00005021195)	ANKK1 (ENSPCTG00005021065) #26	DRD2 (ENSPCTG00005020978) #27	TMPRSS5 (ENSPCTG00005020684) #28	ZW10 (ENSPCTG00005020616) #29	CLDN25 (ENSPCTG00005020602)	USP28 (ENSPCTG00005020403)	HTR3B (ENSPCTG00005020240)	NNMT (ENSPCTG00005020216)	C16H11orf71 (ENSPCTG00005020202)	RBM7 (ENSPCTG00005020155)	REXO2 (ENSPCTG00005020068)	ENSPCTG00005020032	NXPE2 (ENSPCTG00005019956)
Blue whale	MODERN SPECIES	19	CRYAB (ENSBMSG00010006630) #11	ENSBMSG00010006653	HSPB2 (ENSBMSG00010006664) #12	C11orf52 (ENSBMSG00010006674) #13	DIXDC1 (ENSBMSG00010006724) #14	DLAT (ENSBMSG00010006819) #15	ENSBMSG00010006838	PIH1D2 (ENSBMSG00010006852) #16	NKAPD1 (ENSBMSG00010006870)	TIMM8B (ENSBMSG00010006879)	SDHD (ENSBMSG00010006901) #18	IL18 (ENSBMSG00010006928) #19	TEX12 (ENSBMSG00010006955) #20	ENSBMSG00010006971	BCO2 (ENSBMSG00010007007) #21	PTS (ENSBMSG00010007091) #22	ENSBMSG00010007108	ENSBMSG00010007120	NCAM1 (ENSBMSG00010007229) #24	RAB39A (ENSBMSG00010007477)	SLC35F2 (ENSBMSG00010007485)	ENSBMSG00010007492	ELMOD1 (ENSBMSG00010007521)	ALKBH8 (ENSBMSG00010007568)	GUCY1A2 (ENSBMSG00010007597)	ENSBMSG00010007605	ENSBMSG00010007615	CWF19L2 (ENSBMSG00010007631)	AASDHPPT (ENSBMSG00010007644)	KBTBD3 (ENSBMSG00010007657)	MSANTD4 (ENSBMSG00010007664)
Pecora	ANCESTRAL SPECIES	7	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Percora_a	ANCESTRAL SPECIES	6	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Bovidae	ANCESTRAL SPECIES	6	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES	21	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b.a #22	ENSGT01020000231542	ENSGT00390000002752.w.a.d #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b
Bos	ANCESTRAL SPECIES	20	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b.a #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962	ENSGT00870000136493.d
Bos_a	ANCESTRAL SPECIES	15	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b.a #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962	ENSGT00870000136493.d
Domestic yak	MODERN SPECIES	4	CFAP68 (ENSBGRG00000009639) #10	ENSBGRG00000009608	ENSBGRG00000009565	CRYAB (ENSBGRG00000009486) #11	HSPB2 (ENSBGRG00000009463) #12	C11orf52 (ENSBGRG00000009412) #13	DIXDC1 (ENSBGRG00000009255) #14	DLAT (ENSBGRG00000009073) #15	PIH1D2 (ENSBGRG00000008951) #16	NKAPD1 (ENSBGRG00000008876)	TIMM8B (ENSBGRG00000008819)	SDHD (ENSBGRG00000008701) #18	IL18 (ENSBGRG00000008627) #19	TEX12 (ENSBGRG00000008586) #20	BCO2 (ENSBGRG00000008291) #21	ENSBGRG00000008152 #22	ENSBGRG00000008087	ENSBGRG00000008052 #23	NCAM1 (ENSBGRG00000006946) #24	TTC12 (ENSBGRG00000006752)	DRD2 (ENSBGRG00000006710) #27	TMPRSS5 (ENSBGRG00000006680) #28	ZW10 (ENSBGRG00000006589) #29	CLDN25 (ENSBGRG00000006567)	USP28 (ENSBGRG00000005908)	HTR3B (ENSBGRG00000005842)	HTR3A (ENSBGRG00000005742)	ZBTB16 (ENSBGRG00000005665)	C11orf71 (ENSBGRG00000005639)	RBM7 (ENSBGRG00000005606)	REXO2 (ENSBGRG00000005503)
Wild yak	MODERN SPECIES	2789															BCO2 (ENSBMUG00000021788) #21	ENSBMUG00000021814 #22
Bos_b	ANCESTRAL SPECIES	19	ENSGT00390000002905 #10	ENSGT00920000150760	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT01070000253906.h.a.a.a.b	ENSGT00390000002752.w.b.a #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Hybrid Bos Indicus	MODERN SPECIES	6	CFAP68 (ENSBIXG00005003438) #10	ENSBIXG00005006258	CRYAB (ENSBIXG00005020481) #11	HSPB2 (ENSBIXG00005020506) #12	C11orf52 (ENSBIXG00005007838) #13	DIXDC1 (ENSBIXG00005020591) #14	DLAT (ENSBIXG00005020650) #15	PIH1D2 (ENSBIXG00005020707) #16	NKAPD1 (ENSBIXG00005020770)	TIMM8B (ENSBIXG00005020798)	ENSBIXG00005007349	SDHD (ENSBIXG00005020869) #18	IL18 (ENSBIXG00005020955) #19	ENSBIXG00005020973	BCO2 (ENSBIXG00005021074) #21	ENSBIXG00005021131 #22	ENSBIXG00005021146	ENSBIXG00005021157	ENSBIXG00005003583 #23	NCAM1 (ENSBIXG00005022045) #24	TTC12 (ENSBIXG00005022216)	DRD2 (ENSBIXG00005022287) #27	TMPRSS5 (ENSBIXG00005022423) #28	ZW10 (ENSBIXG00005022510) #29	CLDN25 (ENSBIXG00005007227)	USP28 (ENSBIXG00005003888)	HTR3B (ENSBIXG00005022743)	HTR3A (ENSBIXG00005022765)	ZBTB16 (ENSBIXG00005022846)	C11orf71 (ENSBIXG00005022918)	RBM7 (ENSBIXG00005022933)
Bovinae	ANCESTRAL SPECIES	27	ENSGT00390000003710.d.c.b.a	ENSGT00940000155900	ENSGT00390000002749	ENSGT00940000160304.e.b	ENSGT00940000158679	ENSGT01010000222806	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000158740	ENSGT00530000063252.a.a	ENSGT00940000155418.b	ENSGT00940000153306.A.b	ENSGT00940000159642	ENSGT00940000155801	ENSGT00950000182856.b	ENSGT00390000002752.w.b.b #22	ENSGT00940000162329	ENSGT00940000163489	ENSGT00940000162324	ENSGT00390000010921	ENSGT00390000017281	ENSGT00940000162009	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161889	ENSGT00940000161029	ENSGT00390000017536	ENSGT00950000183012.A.b	ENSGT00940000153747.c.a.a.a	ENSGT00990000208501
Bos	ANCESTRAL SPECIES	11	ENSGT00940000155900	ENSGT00390000002749	ENSGT00940000160304.e.b	ENSGT00940000158679	ENSGT01010000222806	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000158740	ENSGT00940000159609.h.a	ENSGT00530000063252.a.a	ENSGT00940000155418.b	ENSGT00940000153306.A.b	ENSGT00940000159642	ENSGT00940000155801	ENSGT00950000182856.b	ENSGT00390000002752.w.b.b #22	ENSGT00940000162329	ENSGT00940000163489	ENSGT00940000162324	ENSGT00390000010921	ENSGT00390000017281	ENSGT00940000162009	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161889	ENSGT00940000161029	ENSGT00390000017536	ENSGT00950000183012.A.b	ENSGT00990000208501	ENSGT00940000153747.c.b.b
Bos_b	ANCESTRAL SPECIES	10	ENSGT00940000156937	ENSGT00940000155900	ENSGT00390000002749	ENSGT00940000160304.e.b	ENSGT00940000158679	ENSGT01010000222806	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000158740	ENSGT00940000159609.h.a	ENSGT00530000063252.a.a	ENSGT00940000155418.b	ENSGT00940000153306.A.b	ENSGT00940000155801	ENSGT00950000182856.b	ENSGT00390000002752.w.b.b #22	ENSGT00940000162329	ENSGT00940000163489	ENSGT00940000162324	ENSGT00390000010921	ENSGT00390000017281	ENSGT00940000162009	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161889	ENSGT00940000161029	ENSGT00390000017536	ENSGT00950000183012.A.b	ENSGT00990000208501	ENSGT00940000153747.c.b.b
Cow	MODERN SPECIES	21	OPCML (ENSBTAG00000020769)	ENSBTAG00000033030	NTM (ENSBTAG00000010032)	TMEM45B (ENSBTAG00000017602)	NFRKB (ENSBTAG00000017610)	PRDM10 (ENSBTAG00000019001)	ENSBTAG00000016502	APLP2 (ENSBTAG00000016168)	ENSBTAG00000050127	ENSBTAG00000033237	ST14 (ENSBTAG00000019712)	ZBTB44 (ENSBTAG00000009210)	ADAMTS8 (ENSBTAG00000010411)	ADAMTS15 (ENSBTAG00000016857)	SNX19 (ENSBTAG00000013076)	ENSBTAG00000022460 #22	MS4A8 (ENSBTAG00000009289)	MS4A18 (ENSBTAG00000038312)	MS4A15 (ENSBTAG00000039461)	MS4A10 (ENSBTAG00000001734)	CCDC86 (ENSBTAG00000014215)	PTGDR2 (ENSBTAG00000039652)	PRPF19 (ENSBTAG00000014366)	TMEM109 (ENSBTAG00000018362)	TMEM132A (ENSBTAG00000018364)	SLC15A3 (ENSBTAG00000018366)	CD6 (ENSBTAG00000018367)	CD5 (ENSBTAG00000013730)	VPS37C (ENSBTAG00000008064)	ENSBTAG00000048600	PAG10 (ENSBTAG00000004116)
Hybrid Bos Indicus	MODERN SPECIES	21	ENSBIXG00005005093	OPCML (ENSBIXG00005002077)	NTM (ENSBIXG00005001973)	ENSBIXG00005029103	TMEM45B (ENSBIXG00005008143)	NFRKB (ENSBIXG00005008188)	PRDM10 (ENSBIXG00005008246)	ENSBIXG00005008278	ENSBIXG00005008284	APLP2 (ENSBIXG00005005680)	ST14 (ENSBIXG00005008405)	ZBTB44 (ENSBIXG00005008413)	ENSBIXG00005008428	ADAMTS15 (ENSBIXG00005000194)	SNX19 (ENSBIXG00005008482)	ENSBIXG00005008500 #22	MS4A8 (ENSBIXG00005008510)	ENSBIXG00005008524	MS4A15 (ENSBIXG00005008562)	MS4A10 (ENSBIXG00005008571)	CCDC86 (ENSBIXG00005008590)	PTGDR2 (ENSBIXG00005000222)	PRPF19 (ENSBIXG00005008605)	TMEM109 (ENSBIXG00005008617)	TMEM132A (ENSBIXG00005008648)	SLC15A3 (ENSBIXG00005000245)	CD6 (ENSBIXG00005008712)	CD5 (ENSBIXG00005008742)	VPS37C (ENSBIXG00005008766)	ENSBIXG00005008796	ENSBIXG00005008826
Bos_a	ANCESTRAL SPECIES	45	ENSGT00390000003710.d.c.b.a	ENSGT00940000155900	ENSGT00390000002749	ENSGT00940000160304.e.b	ENSGT00940000158679	ENSGT00940000157181	ENSGT00390000016213	ENSGT00940000158740	ENSGT00940000159609.h.a	ENSGT00530000063252.a.a	ENSGT00940000155418.b	ENSGT00940000153306.A.b	ENSGT00940000159642	ENSGT00940000155801	ENSGT00950000182856.b	ENSGT00390000002752.w.b.b #22	ENSGT00940000162329	ENSGT00940000163489	ENSGT00940000162324	ENSGT00390000010921	ENSGT00390000017281	ENSGT00940000162009	ENSGT00940000153662.A	ENSGT00390000015704	ENSGT00940000161414	ENSGT00940000161889	ENSGT00940000161029	ENSGT00390000017536	ENSGT00950000183012.A.b	ENSGT00990000208501	ENSGT00940000153747.c.b.b
Domestic yak	MODERN SPECIES	21	SPATA19 (ENSBGRG00000023692)	OPCML (ENSBGRG00000023514)	NTM (ENSBGRG00000023281)	TMEM45B (ENSBGRG00000023184)	NFRKB (ENSBGRG00000022970)	PRDM10 (ENSBGRG00000022866)	ENSBGRG00000022843	ENSBGRG00000022831	APLP2 (ENSBGRG00000022006)	ENSBGRG00000021958	ST14 (ENSBGRG00000021803)	ZBTB44 (ENSBGRG00000021732)	ENSBGRG00000021642	ADAMTS15 (ENSBGRG00000021599)	SNX19 (ENSBGRG00000021477)	ENSBGRG00000021444 #22	ENSBGRG00000021311	ENSBGRG00000021279	MS4A15 (ENSBGRG00000021106)	MS4A10 (ENSBGRG00000021017)	CCDC86 (ENSBGRG00000020962)	PTGDR2 (ENSBGRG00000020949)	PRPF19 (ENSBGRG00000020710)	TMEM109 (ENSBGRG00000020661)	TMEM132A (ENSBGRG00000020478)	SLC15A3 (ENSBGRG00000020389)	CD6 (ENSBGRG00000020301)	CD5 (ENSBGRG00000020168)	VPS37C (ENSBGRG00000020082)	ENSBGRG00000020014	ENSBGRG00000019886
Wild yak	MODERN SPECIES	1482																ENSBMUG00000015430 #22	MS4A8 (ENSBMUG00000015415)	ENSBMUG00000015396	MS4A15 (ENSBMUG00000015373)	MS4A10 (ENSBMUG00000015345)	CCDC86 (ENSBMUG00000015321)	PTGDR2 (ENSBMUG00000015315)	PRPF19 (ENSBMUG00000015296)	TMEM109 (ENSBMUG00000015283)	TMEM132A (ENSBMUG00000015262)	SLC15A3 (ENSBMUG00000015254)	CD6 (ENSBMUG00000015195)	CD5 (ENSBMUG00000015138)	VPS37C (ENSBMUG00000015127)
American bison	MODERN SPECIES	3123	SPATA19 (ENSBBBG00000015962)	ENSBBBG00000015940	ENSBBBG00000015905	NTM (ENSBBBG00000000776)	ENSBBBG00000015871	TMEM45B (ENSBBBG00000015851)	NFRKB (ENSBBBG00000002611)	PRDM10 (ENSBBBG00000015742)	APLP2 (ENSBBBG00000015615)	ENSBBBG00000003848	ST14 (ENSBBBG00000003844)	ZBTB44 (ENSBBBG00000015411)	ADAMTS8 (ENSBBBG00000002731)	ADAMTS15 (ENSBBBG00000015401)	SNX19 (ENSBBBG00000015383)	ENSBBBG00000003817 #22	MS4A8 (ENSBBBG00000015338)	ENSBBBG00000015328	MS4A15 (ENSBBBG00000003807)	MS4A10 (ENSBBBG00000001261)
Caprinae	ANCESTRAL SPECIES	6	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962	ENSGT00870000136493.d
Goat	DUPLICATION
Goat	MODERN SPECIES	6	ALG9 (ENSCHIG00000017199) #8	FDXACB1 (ENSCHIG00000017261) #9	CFAP68 (ENSCHIG00000025925) #10	ENSCHIG00000015620	CRYAB (ENSCHIG00000014088) #11	HSPB2 (ENSCHIG00000025796) #12	DIXDC1 (ENSCHIG00000013840) #14	ENSCHIG00000020818 #15	PIH1D2 (ENSCHIG00000014262) #16	NKAPD1 (ENSCHIG00000012353)	TIMM8B (ENSCHIG00000009368)	SDHD (ENSCHIG00000002240) #18	IL18 (ENSCHIG00000020991) #19	TEX12 (ENSCHIG00000011647) #20	BCO2 (ENSCHIG00000011184) #21	ENSCHIG00000025544 #22	ENSCHIG00000010511	NCAM1 (ENSCHIG00000013038) #24	TTC12 (ENSCHIG00000006414)	ANKK1 (ENSCHIG00000024082) #26	DRD2 (ENSCHIG00000004216) #27	TMPRSS5 (ENSCHIG00000017835) #28	ZW10 (ENSCHIG00000025959) #29	USP28 (ENSCHIG00000016960)	HTR3B (ENSCHIG00000011976)	HTR3A (ENSCHIG00000025459)	ZBTB16 (ENSCHIG00000008305)	ENSCHIG00000008702	ENSCHIG00000019784	C11orf71 (ENSCHIG00000012470)	ENSCHIG00000008632
Goat	MODERN SPECIES	20												COG2 (ENSCHIG00000007135)	AGT (ENSCHIG00000010778)	TFAM (ENSCHIG00000014685)	ZNF32 (ENSCHIG00000021099)	ENSCHIG00000025116 #22	CXCL12 (ENSCHIG00000010998)	TMEM72 (ENSCHIG00000015451)	RASSF4 (ENSCHIG00000019714)	DEPP1 (ENSCHIG00000004603)	ENSCHIG00000007553	ENSCHIG00000014458	OR13A1 (ENSCHIG00000018968)	ALOX5 (ENSCHIG00000023024)	ENSCHIG00000016249	ENSCHIG00000020823	ENSCHIG00000007842	ENSCHIG00000015659	ENSCHIG00000022029	ENSCHIG00000010804	PARG (ENSCHIG00000015697)
Rambouillet Sheep	MODERN SPECIES	6	CFAP68 (ENSOARG00020017683) #10	CRYAB (ENSOARG00020017879) #11	ENSOARG00020017997	HSPB2 (ENSOARG00020018038) #12	C11orf52 (ENSOARG00020018078) #13	DIXDC1 (ENSOARG00020018135) #14	DLAT (ENSOARG00020018609) #15	PIH1D2 (ENSOARG00020018775) #16	NKAPD1 (ENSOARG00020018908)	TIMM8B (ENSOARG00020019033)	SDHD (ENSOARG00020019097) #18	IL18 (ENSOARG00020019313) #19	TEX12 (ENSOARG00020019390) #20	BCO2 (ENSOARG00020019443) #21	ENSOARG00020019588	PTS (ENSOARG00020019616) #22	ENSOARG00020019701	NCAM1 (ENSOARG00020019782) #24	TTC12 (ENSOARG00020020523)	DRD2 (ENSOARG00020021004) #27	TMPRSS5 (ENSOARG00020021191) #28	ZW10 (ENSOARG00020021659) #29	CLDN25 (ENSOARG00020021788)	USP28 (ENSOARG00020021860)	HTR3B (ENSOARG00020022820)	HTR3A (ENSOARG00020022887)	ZBTB16 (ENSOARG00020022958)	ENSOARG00020022996	C11orf71 (ENSOARG00020023012)	RBM7 (ENSOARG00020023023)	REXO2 (ENSOARG00020023074)
Siberian musk deer	MODERN SPECIES	1171	FDXACB1 (ENSMMSG00000014755) #9	CFAP68 (ENSMMSG00000014672) #10	ENSMMSG00000014657	CRYAB (ENSMMSG00000014594) #11	HSPB2 (ENSMMSG00000014583) #12	C11orf52 (ENSMMSG00000014569) #13	DIXDC1 (ENSMMSG00000014475) #14	DLAT (ENSMMSG00000014400) #15	PIH1D2 (ENSMMSG00000014366) #16	NKAPD1 (ENSMMSG00000014327)	TIMM8B (ENSMMSG00000014305)	ENSMMSG00000014216 #18	IL18 (ENSMMSG00000023403) #19	TEX12 (ENSMMSG00000023390) #20	BCO2 (ENSMMSG00000023366) #21	PTS (ENSMMSG00000023360) #22	ENSMMSG00000023353	NCAM1 (ENSMMSG00000022395) #24	TTC12 (ENSMMSG00000022307)	DRD2 (ENSMMSG00000022227) #27	ENSMMSG00000022181 #28	ZW10 (ENSMMSG00000022114) #29	CLDN25 (ENSMMSG00000022091)	USP28 (ENSMMSG00000021700)	HTR3B (ENSMMSG00000021606)	HTR3A (ENSMMSG00000021560)	ZBTB16 (ENSMMSG00000021523)	ENSMMSG00000021510	C11orf71 (ENSMMSG00000021496)	RBM7 (ENSMMSG00000021482)	REXO2 (ENSMMSG00000021410)
Yarkand deer	MODERN SPECIES		CFAP68 (ENSCHYG00000000539) #10	ENSCHYG00000000569	CRYAB (ENSCHYG00000000588) #11	HSPB2 (ENSCHYG00000000607) #12	C11orf52 (ENSCHYG00000000617) #13	DIXDC1 (ENSCHYG00000000638) #14	DLAT (ENSCHYG00000000729) #15	PIH1D2 (ENSCHYG00000000788) #16	NKAPD1 (ENSCHYG00000000811)	TIMM8B (ENSCHYG00000000844)	ENSCHYG00000000866 #18	IL18 (ENSCHYG00000000912) #19	ENSCHYG00000000937 #20	BCO2 (ENSCHYG00000000956) #21	ENSCHYG00000001037	ENSCHYG00000001052 #22	ENSCHYG00000001075	NCAM1 (ENSCHYG00000001186) #24	TTC12 (ENSCHYG00000001569)	DRD2 (ENSCHYG00000001660) #27	ENSCHYG00000001689	TMPRSS5 (ENSCHYG00000001706) #28	ZW10 (ENSCHYG00000001731) #29	CLDN25 (ENSCHYG00000001763)	USP28 (ENSCHYG00000001822)	HTR3B (ENSCHYG00000002085)	HTR3A (ENSCHYG00000002132)	ZBTB16 (ENSCHYG00000002154)	ENSCHYG00000002178	C11orf71 (ENSCHYG00000002185)	RBM7 (ENSCHYG00000002190)
Suina	ANCESTRAL SPECIES	5	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Pig	MODERN SPECIES	17	ALG9 (ENSSSCG00000015023) #8	ENSSSCG00000015027 #10	FDXACB1 (ENSSSCG00000021871) #9	CRYAB (ENSSSCG00000036724) #11	C11orf52 (ENSSSCG00000015035) #13	ENSSSCG00000049415 #14	ENSSSCG00000015036 #14	DLAT (ENSSSCG00000015030) #15	PIH1D2 (ENSSSCG00000015031) #16	NKAPD1 (ENSSSCG00000015044)	TIMM8B (ENSSSCG00000023599)	SDHD (ENSSSCG00000015034) #18	IL18 (ENSSSCG00000015037) #19	TEX12 (ENSSSCG00000058261) #20	BCO2 (ENSSSCG00000015039) #21	PTS (ENSSSCG00000015040) #22	PLET1 (ENSSSCG00000032149)	NCAM1 (ENSSSCG00000015045) #24	ENSSSCG00000051311 #23	TTC12 (ENSSSCG00000015047)	DRD2 (ENSSSCG00000015048) #27	ENSSSCG00000015049 #28	ZW10 (ENSSSCG00000015050) #29	CLDN25 (ENSSSCG00000015051)	USP28 (ENSSSCG00000015052)	HTR3B (ENSSSCG00000015053)	HTR3A (ENSSSCG00000024497)	ZBTB16 (ENSSSCG00000030095)	NNMT (ENSSSCG00000015054)	C11orf71 (ENSSSCG00000036867)	RBM7 (ENSSSCG00000027905)
Chacoan peccary	MODERN SPECIES	29	PPP2R1B (ENSCWAG00000003626)	ALG9 (ENSCWAG00000003588) #8	FDXACB1 (ENSCWAG00000003573) #9	CFAP68 (ENSCWAG00000003551) #10	CRYAB (ENSCWAG00000003536) #11	HSPB2 (ENSCWAG00000003526) #12	DIXDC1 (ENSCWAG00000003452) #14	DLAT (ENSCWAG00000003431) #15	PIH1D2 (ENSCWAG00000003416) #16	NKAPD1 (ENSCWAG00000003402)	TIMM8B (ENSCWAG00000003395)	SDHD (ENSCWAG00000003372) #18	IL18 (ENSCWAG00000003351) #19	TEX12 (ENSCWAG00000003333) #20	BCO2 (ENSCWAG00000003115) #21	ENSCWAG00000003073 #22	ENSCWAG00000003060	TSHB (ENSCWAG00000003050)	TSPAN2 (ENSCWAG00000003035)	NGF (ENSCWAG00000003021)	VANGL1 (ENSCWAG00000002974)	CASQ2 (ENSCWAG00000002945)	NHLH2 (ENSCWAG00000002933)	SLC22A15 (ENSCWAG00000002907)	MAB21L3 (ENSCWAG00000002889)	ATP1A1 (ENSCWAG00000002813)	ENSCWAG00000002786	IGSF3 (ENSCWAG00000002762)	ENSCWAG00000002742	PTGFRN (ENSCWAG00000002730)	CD101 (ENSCWAG00000002714)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Carnivora	ANCESTRAL SPECIES	21	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Felidae	ANCESTRAL SPECIES		ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.k #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Panthera	ANCESTRAL SPECIES	26	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.k #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00390000004690.a.b	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Panthera_a	ANCESTRAL SPECIES	29	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.k #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00390000004690.a.b	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
lion	MODERN SPECIES	10	ALG9 (ENSPLOG00000012556) #8	FDXACB1 (ENSPLOG00000012676) #9	CFAP68 (ENSPLOG00000012724) #10	CRYAB (ENSPLOG00000012851) #11	HSPB2 (ENSPLOG00000012937) #12	C11orf52 (ENSPLOG00000012976) #13	DIXDC1 (ENSPLOG00000013085) #14	DLAT (ENSPLOG00000013436) #15	PIH1D2 (ENSPLOG00000013685) #16	NKAPD1 (ENSPLOG00000013809)	ENSPLOG00000013969	SDHD (ENSPLOG00000014028) #18	IL18 (ENSPLOG00000014189) #19	TEX12 (ENSPLOG00000014260) #20	BCO2 (ENSPLOG00000014307) #21	ENSPLOG00000014583 #22	ENSPLOG00000014644	ENSPLOG00000014706	NCAM1 (ENSPLOG00000014902) #24	TTC12 (ENSPLOG00000016083)	ANKK1 (ENSPLOG00000016123) #26	DRD2 (ENSPLOG00000016207) #27	TMPRSS5 (ENSPLOG00000016385) #28	ZW10 (ENSPLOG00000016929) #29	CLDN25 (ENSPLOG00000016982)	USP28 (ENSPLOG00000017026)	HTR3A (ENSPLOG00000017392)	ZBTB16 (ENSPLOG00000017495)	ENSPLOG00000017537	NNMT (ENSPLOG00000017608)	C11orf71 (ENSPLOG00000017662)
leopard	MODERN SPECIES	54	FDXACB1 (ENSPPRG00000005967) #9	CFAP68 (ENSPPRG00000006757) #10	CRYAB (ENSPPRG00000007732) #11	HSPB2 (ENSPPRG00000007857) #12	C11orf52 (ENSPPRG00000008042) #13	ENSPPRG00000009234 #14	ENSPPRG00000009484 #14	DLAT (ENSPPRG00000011054) #15	PIH1D2 (ENSPPRG00000014692) #16	NKAPD1 (ENSPPRG00000016843)	TIMM8B (ENSPPRG00000017444)	ENSPPRG00000020896 #18	IL18 (ENSPPRG00000022629) #19	TEX12 (ENSPPRG00000000311) #20	BCO2 (ENSPPRG00000003902) #21	ENSPPRG00000004172 #22	ENSPPRG00000004704	NCAM1 (ENSPPRG00000021537) #24	TTC12 (ENSPPRG00000000560)	ANKK1 (ENSPPRG00000000956) #26	DRD2 (ENSPPRG00000003219) #27	TMPRSS5 (ENSPPRG00000009733) #28	ZW10 (ENSPPRG00000010534) #29	CLDN25 (ENSPPRG00000017919)	USP28 (ENSPPRG00000013744)	HTR3B (ENSPPRG00000020122)	HTR3A (ENSPPRG00000002141)	ZBTB16 (ENSPPRG00000002582)	ENSPPRG00000002934	NNMT (ENSPPRG00000003013)	ENSPPRG00000003205
Tiger	MODERN SPECIES	46	FDXACB1 (ENSPTIG00000016420) #9	CFAP68 (ENSPTIG00000015835) #10	HSPB2 (ENSPTIG00000014503) #12	CRYAB (ENSPTIG00000012654) #11	C11orf52 (ENSPTIG00000011672) #13	ENSPTIG00000010869 #14	ENSPTIG00000007844 #14	DLAT (ENSPTIG00000004725) #15	PIH1D2 (ENSPTIG00000021460) #16	NKAPD1 (ENSPTIG00000021035)	TIMM8B (ENSPTIG00000020493)	SDHD (ENSPTIG00000020122) #18	IL18 (ENSPTIG00000019811) #19	TEX12 (ENSPTIG00000019210) #20	BCO2 (ENSPTIG00000017037) #21	ENSPTIG00000016607 #22
Cat	MODERN SPECIES	241	PPP2R1B (ENSFCAG00000015663)	ALG9 (ENSFCAG00000015665) #8	CFAP68 (ENSFCAG00000035832) #10	CRYAB (ENSFCAG00000028550) #11	HSPB2 (ENSFCAG00000045528) #12	CD1H11orf52 (ENSFCAG00000036295) #13	DIXDC1 (ENSFCAG00000015674) #14	DLAT (ENSFCAG00000015676) #15	PIH1D2 (ENSFCAG00000000608) #16	NKAPD1 (ENSFCAG00000028797)	TIMM8B (ENSFCAG00000029788)	SDHD (ENSFCAG00000022580) #18	IL18 (ENSFCAG00000029199) #19	TEX12 (ENSFCAG00000025288) #20	BCO2 (ENSFCAG00000006221) #21	ENSFCAG00000024702 #22	PLET1 (ENSFCAG00000052108)	NCAM1 (ENSFCAG00000013891) #24	TTC12 (ENSFCAG00000008291)	ANKK1 (ENSFCAG00000046677) #26	DRD2 (ENSFCAG00000008293) #27	ZW10 (ENSFCAG00000004975) #29	CLDN25 (ENSFCAG00000026496)	USP28 (ENSFCAG00000004976)	HTR3B (ENSFCAG00000004982)	HTR3A (ENSFCAG00000004983)	ZBTB16 (ENSFCAG00000026205)	ENSFCAG00000042461	RBM7 (ENSFCAG00000040484)	REXO2 (ENSFCAG00000018632)	CADM1 (ENSFCAG00000023346)
Caniformia	ANCESTRAL SPECIES	17	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.a.b #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00390000002752.w.b #22
Giant Panda	MODERN SPECIES	4	RILP (ENSAMEG00000008003)	PRPF8 (ENSAMEG00000007940)	TLCD2 (ENSAMEG00000027166)	WDR81 (ENSAMEG00000007888)	SERPINF2 (ENSAMEG00000007857)	SERPINF1 (ENSAMEG00000007809)	SMYD4 (ENSAMEG00000007774)	RPA1 (ENSAMEG00000007706)	RTN4RL1 (ENSAMEG00000018472)	DPH1 (ENSAMEG00000007669)	HIC1 (ENSAMEG00000028716)	SMG6 (ENSAMEG00000007632)	TSR1 (ENSAMEG00000007599)	SGSM2 (ENSAMEG00000007554)	MNT (ENSAMEG00000007541)	ENSAMEG00000027637 #22	METTL16 (ENSAMEG00000007516)	PAFAH1B1 (ENSAMEG00000007485)	CLUH (ENSAMEG00000007458)	ENSAMEG00000025428	RAP1GAP2 (ENSAMEG00000007412)	ENSAMEG00000006358	ENSAMEG00000030558	ENSAMEG00000028317	ENSAMEG00000025416	ENSAMEG00000019580	ENSAMEG00000018470	ENSAMEG00000030940	OR3A1 (ENSAMEG00000027998)	ENSAMEG00000024803	ENSAMEG00000006362
Canidae	ANCESTRAL SPECIES	27	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Canis_lupus	ANCESTRAL SPECIES	28	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00950000183144.A.i.a.a.a.a	ENSGT01030000234791.l	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a
Dingo	MODERN SPECIES	214	ENSCAFG00020006563	ALG9 (ENSCAFG00020006337) #8	FDXACB1 (ENSCAFG00020006314) #9	CFAP68 (ENSCAFG00020006306) #10	CRYAB (ENSCAFG00020006303) #11	HSPB2 (ENSCAFG00020006298) #12	DIXDC1 (ENSCAFG00020006187) #14	DLAT (ENSCAFG00020006065) #15	PIH1D2 (ENSCAFG00020006045) #16	NKAPD1 (ENSCAFG00020006038)	TIMM8B (ENSCAFG00020006035)	SDHD (ENSCAFG00020006032) #18	IL18 (ENSCAFG00020006031) #19	TEX12 (ENSCAFG00020006024) #20	BCO2 (ENSCAFG00020005962) #21	PTS (ENSCAFG00020005952) #22	ENSCAFG00020005942	ENSCAFG00020005937	ENSCAFG00020005932	NCAM1 (ENSCAFG00020005853) #24	TTC12 (ENSCAFG00020005382)	ANKK1 (ENSCAFG00020005346) #26	DRD2 (ENSCAFG00020005329) #27	TMPRSS5 (ENSCAFG00020005248) #28	ZW10 (ENSCAFG00020004218) #29	CLDN25 (ENSCAFG00020004160)	USP28 (ENSCAFG00020002820)	HTR3B (ENSCAFG00020002619)	HTR3A (ENSCAFG00020002588)	ZBTB16 (ENSCAFG00020002582)	ENSCAFG00020002568
Laurasiatheria_c	ANCESTRAL SPECIES	23	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Chiroptera	ANCESTRAL SPECIES	33	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Megabat	MODERN SPECIES	1332													IL18 (ENSPVAG00000014063) #19	TEX12 (ENSPVAG00000014066) #20	BCO2 (ENSPVAG00000014067) #21	PTS (ENSPVAG00000014070) #22	ENSPVAG00000014071
Microchiroptera	ANCESTRAL SPECIES	34	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Microbat	MODERN SPECIES	1054	ENSMLUG00000030441	SIK2 (ENSMLUG00000010657) #7	PPP2R1B (ENSMLUG00000010693)	ALG9 (ENSMLUG00000016726) #8	FDXACB1 (ENSMLUG00000014872) #9	CFAP68 (ENSMLUG00000028988) #10	DIXDC1 (ENSMLUG00000012193) #14	DLAT (ENSMLUG00000012212) #15	PIH1D2 (ENSMLUG00000012219) #16	NKAPD1 (ENSMLUG00000024705)	TIMM8B (ENSMLUG00000012225)	SDHD (ENSMLUG00000012228) #18	ENSMLUG00000027380 #19	TEX12 (ENSMLUG00000017694) #20	BCO2 (ENSMLUG00000017695) #21	PTS (ENSMLUG00000023388) #22	ENSMLUG00000009366	ENSMLUG00000027294	NCAM1 (ENSMLUG00000011838) #24	TTC12 (ENSMLUG00000011854)	ANKK1 (ENSMLUG00000011881) #26	DRD2 (ENSMLUG00000011890) #27	ZW10 (ENSMLUG00000014203) #29	DYNC2H1 (ENSMLUG00000003216)	PDGFD (ENSMLUG00000011003)	DDI1 (ENSMLUG00000014443)
Equus	ANCESTRAL SPECIES	25	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Donkey	MODERN SPECIES	12	ALG9 (ENSEASG00005007203) #8	FDXACB1 (ENSEASG00005007198) #9	CFAP68 (ENSEASG00005032215) #10	HSPB2 (ENSEASG00005007190) #12	CRYAB (ENSEASG00005007191) #11	C11orf52 (ENSEASG00005030671) #13	DIXDC1 (ENSEASG00005007160) #14	DLAT (ENSEASG00005007061) #15	PIH1D2 (ENSEASG00005007042) #16	NKAPD1 (ENSEASG00005034597)	ENSEASG00005037008	SDHD (ENSEASG00005028496) #18	IL18 (ENSEASG00005006993) #19	TEX12 (ENSEASG00005038817) #20	BCO2 (ENSEASG00005006807) #21	PTS (ENSEASG00005032413) #22	ENSEASG00005038442	NCAM1 (ENSEASG00005006756) #24	TTC12 (ENSEASG00005006742)	ANKK1 (ENSEASG00005006737) #26	DRD2 (ENSEASG00005006735) #27	TMPRSS5 (ENSEASG00005006720) #28	ZW10 (ENSEASG00005006707) #29	CLDN25 (ENSEASG00005006703)	USP28 (ENSEASG00005006691)	HTR3A (ENSEASG00005006687)	ENSEASG00005028806	ZBTB16 (ENSEASG00005006684)	C11orf71 (ENSEASG00005006678)	RBM7 (ENSEASG00005031719)	REXO2 (ENSEASG00005006674)
Horse	MODERN SPECIES	28	CFAP68 (ENSECAG00000011862) #10	FDXACB1 (ENSECAG00000009561) #9	CRYAB (ENSECAG00000012507) #11	HSPB2 (ENSECAG00000012754) #12	C7H11orf52 (ENSECAG00000012767) #13	DIXDC1 (ENSECAG00000012987) #14	DLAT (ENSECAG00000021375) #15	PIH1D2 (ENSECAG00000012307) #16	NKAPD1 (ENSECAG00000014411)	TIMM8B (ENSECAG00000014836)	SDHD (ENSECAG00000031721) #18	ENSECAG00000059719	IL18 (ENSECAG00000015261) #19	TEX12 (ENSECAG00000020108) #20	BCO2 (ENSECAG00000020311) #21	PTS (ENSECAG00000015565) #22	PLET1 (ENSECAG00000031885)	NCAM1 (ENSECAG00000019193) #24	TTC12 (ENSECAG00000017966)	ANKK1 (ENSECAG00000011781) #26	DRD2 (ENSECAG00000013567) #27	TMPRSS5 (ENSECAG00000023128) #28	ZW10 (ENSECAG00000011623) #29	CLDN25 (ENSECAG00000005722)	USP28 (ENSECAG00000023344)	HTR3A (ENSECAG00000020191)	ZBTB16 (ENSECAG00000024358)	ENSECAG00000004515	NNMT (ENSECAG00000042589)	C7H11orf71 (ENSECAG00000005737)	RBM7 (ENSECAG00000004636)
Eutheria	ANCESTRAL SPECIES	3	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l
Atlantogenata	ANCESTRAL SPECIES	40	ENSGT00940000157434 #11	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.w #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00940000176045	ENSGT01030000238113	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Xenarthra	ANCESTRAL SPECIES	50	ENSGT00950000183066.a.a.b	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00530000067880	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.w #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000001053 #19	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27
Armadillo	DUPLICATION
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	3419													ENSDNOG00000047249	LPAR1 (ENSDNOG00000042568)	MUSK (ENSDNOG00000047839)	ENSDNOG00000048761 #22	SVEP1 (ENSDNOG00000015790)	ENSDNOG00000033933	ENSDNOG00000042425	ENSDNOG00000036529	C9orf152 (ENSDNOG00000044711)	ENSDNOG00000001950	ENSDNOG00000043289	ENSDNOG00000039276
Armadillo	MODERN SPECIES	295	UROS (ENSDNOG00000035840)	MMP21 (ENSDNOG00000046951)	EDRF1 (ENSDNOG00000006908)	TEX36 (ENSDNOG00000004199)	CTBP2 (ENSDNOG00000038675)	ZRANB1 (ENSDNOG00000044807)	ABRAXAS2 (ENSDNOG00000032786)	EEF1AKMT2 (ENSDNOG00000049387)	ENSDNOG00000030957	LHPP (ENSDNOG00000040784)	ENSDNOG00000038394	ENSDNOG00000006180	CHST15 (ENSDNOG00000043470)	CPXM2 (ENSDNOG00000013028)	GPR26 (ENSDNOG00000038460)	ENSDNOG00000042732 #22
Armadillo	MODERN SPECIES	864	PLXNB1 (ENSDNOG00000037904)	CCDC51 (ENSDNOG00000037611)	ENSDNOG00000041546	ATRIP (ENSDNOG00000014199)	TREX1 (ENSDNOG00000024273)	SHISA5 (ENSDNOG00000041410)	ENSDNOG00000039445	ENSDNOG00000048736	UQCRC1 (ENSDNOG00000009838)	TMEM89 (ENSDNOG00000042610)	ENSDNOG00000048607	SLC26A6 (ENSDNOG00000032436)	NCKIPSD (ENSDNOG00000025438)	IP6K2 (ENSDNOG00000010809)	PRKAR2A (ENSDNOG00000010826)	ENSDNOG00000034621 #22	SLC25A20 (ENSDNOG00000000976)	ARIH2 (ENSDNOG00000032223)	P4HTM (ENSDNOG00000014050)	WDR6 (ENSDNOG00000033276)	DALRD3 (ENSDNOG00000041605)	NDUFAF3 (ENSDNOG00000014096)	IMPDH2 (ENSDNOG00000014105)	QRICH1 (ENSDNOG00000014130)	QARS1 (ENSDNOG00000014157)	ENSDNOG00000031599	ENSDNOG00000000033	ENSDNOG00000044903	KLHDC8B (ENSDNOG00000032781)	C3orf84 (ENSDNOG00000043752)	IHO1 (ENSDNOG00000013880)
Sloth	MODERN SPECIES	4080														ENSCHOG00000000011	BCO2 (ENSCHOG00000000012) #21	PTS (ENSCHOG00000000013) #22
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.w.b #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Primates	ANCESTRAL SPECIES		ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Mouse lemur	MODERN SPECIES	27	PPP2R1B (ENSMICG00000015746)	ALG9 (ENSMICG00000015769) #8	FDXACB1 (ENSMICG00000045510) #9	CFAP68 (ENSMICG00000038156) #10	CRYAB (ENSMICG00000030367) #11	HSPB2 (ENSMICG00000015816) #12	C11orf52 (ENSMICG00000047742) #13	DIXDC1 (ENSMICG00000015829) #14	DLAT (ENSMICG00000015865) #15	PIH1D2 (ENSMICG00000015880) #16	NKAPD1 (ENSMICG00000026692)	TIMM8B (ENSMICG00000031984)	SDHD (ENSMICG00000008626) #18	IL18 (ENSMICG00000045913) #19	BCO2 (ENSMICG00000008638) #21	PTS (ENSMICG00000008651) #22	ENSMICG00000038787	NCAM1 (ENSMICG00000003994) #24	TTC12 (ENSMICG00000004006)	DRD2 (ENSMICG00000004037) #27	TMPRSS5 (ENSMICG00000017530) #28	ZW10 (ENSMICG00000009595) #29	USP28 (ENSMICG00000009608)	HTR3B (ENSMICG00000010056)	ENSMICG00000017534	ENSMICG00000046158	ENSMICG00000012870	ENSMICG00000045490	ENSMICG00000045144	AAMDC (ENSMICG00000000300)	ENSMICG00000009837
Lemuriformes_a	ANCESTRAL SPECIES	22	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c
Coquerels sifaka	MODERN SPECIES	760	FDXACB1 (ENSPCOG00000027443) #9	CFAP68 (ENSPCOG00000021613) #10	CRYAB (ENSPCOG00000015670) #11	HSPB2 (ENSPCOG00000023616) #12	C11orf52 (ENSPCOG00000016017) #13	DIXDC1 (ENSPCOG00000014302) #14	DLAT (ENSPCOG00000014290) #15	PIH1D2 (ENSPCOG00000024160) #16	NKAPD1 (ENSPCOG00000003388)	TIMM8B (ENSPCOG00000026969)	SDHD (ENSPCOG00000019028) #18	ENSPCOG00000024440 #19	ENSPCOG00000028355	TEX12 (ENSPCOG00000023524) #20	BCO2 (ENSPCOG00000020109) #21	PTS (ENSPCOG00000024186) #22	NCAM1 (ENSPCOG00000022925) #24	TTC12 (ENSPCOG00000024368)	DRD2 (ENSPCOG00000007514) #27	TMPRSS5 (ENSPCOG00000006628) #28	ZW10 (ENSPCOG00000020599) #29	USP28 (ENSPCOG00000018279)	ENSPCOG00000019270	HTR3B (ENSPCOG00000013139)	HTR3A (ENSPCOG00000025438)	ZBTB16 (ENSPCOG00000004404)	NNMT (ENSPCOG00000027693)	C11orf71 (ENSPCOG00000015231)	ENSPCOG00000022719	REXO2 (ENSPCOG00000027639)	NXPE1 (ENSPCOG00000016490)
Greater bamboo lemur	MODERN SPECIES	351	ALG9 (ENSPSMG00000020654) #8	FDXACB1 (ENSPSMG00000020667) #9	CFAP68 (ENSPSMG00000020689) #10	CRYAB (ENSPSMG00000020704) #11	ENSPSMG00000020711	HSPB2 (ENSPSMG00000020720) #12	C11orf52 (ENSPSMG00000020726) #13	DIXDC1 (ENSPSMG00000020875) #14	DLAT (ENSPSMG00000021014) #15	PIH1D2 (ENSPSMG00000021045) #16	NKAPD1 (ENSPSMG00000021060)	TIMM8B (ENSPSMG00000021071)	SDHD (ENSPSMG00000021107) #18	IL18 (ENSPSMG00000021131) #19	BCO2 (ENSPSMG00000021155) #21	PTS (ENSPSMG00000021176) #22	NCAM1 (ENSPSMG00000021739) #24	TTC12 (ENSPSMG00000022371)	DRD2 (ENSPSMG00000022465) #27	TMPRSS5 (ENSPSMG00000022572) #28	ZW10 (ENSPSMG00000022631) #29	CLDN25 (ENSPSMG00000022639)	USP28 (ENSPSMG00000022691)	HTR3B (ENSPSMG00000022720)	ENSPSMG00000022726	HTR3A (ENSPSMG00000022757)	ZBTB16 (ENSPSMG00000022771)	NNMT (ENSPSMG00000022778)	C11orf71 (ENSPSMG00000022783)	RBM7 (ENSPSMG00000022804)	REXO2 (ENSPSMG00000022850)
Bushbaby	MODERN SPECIES	201	LAYN (ENSOGAG00000012637)	SIK2 (ENSOGAG00000012640) #7	PPP2R1B (ENSOGAG00000012650)	ALG9 (ENSOGAG00000012667) #8	CRYAB (ENSOGAG00000012670) #11	HSPB2 (ENSOGAG00000012672) #12	DIXDC1 (ENSOGAG00000008552) #14	DLAT (ENSOGAG00000008559) #15	PIH1D2 (ENSOGAG00000008562) #16	NKAPD1 (ENSOGAG00000008565)	TIMM8B (ENSOGAG00000008566)	SDHD (ENSOGAG00000008568) #18	IL18 (ENSOGAG00000029905) #19	TEX12 (ENSOGAG00000017189) #20	BCO2 (ENSOGAG00000017190) #21	PTS (ENSOGAG00000017191) #22	NCAM1 (ENSOGAG00000006401) #24	TTC12 (ENSOGAG00000006402)	DRD2 (ENSOGAG00000006407) #27	ENSOGAG00000007401	TMPRSS5 (ENSOGAG00000026392) #28	ZW10 (ENSOGAG00000011584) #29	CLDN25 (ENSOGAG00000024445)	USP28 (ENSOGAG00000004313)	HTR3B (ENSOGAG00000004318)	HTR3A (ENSOGAG00000004319)	ZBTB16 (ENSOGAG00000033673)	NNMT (ENSOGAG00000031697)	C11orf71 (ENSOGAG00000016855)	RBM7 (ENSOGAG00000016857)	REXO2 (ENSOGAG00000016860)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Simiiformes	ANCESTRAL SPECIES		ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a.a.b #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x.c #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000164522.c.b	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Cebidae	DUPLICATION
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002752.x.c.a.a #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002752.x.c.a.a #22
Bolivian squirrel monkey	MODERN SPECIES	74	MYH13 (ENSSBOG00000034701)	GAS7 (ENSSBOG00000034822)	RCVRN (ENSSBOG00000027586)	GLP2R (ENSSBOG00000025968)	GSG1L2 (ENSSBOG00000016185)	DHRS7C (ENSSBOG00000033507)	USP43 (ENSSBOG00000003915)	CFAP52 (ENSSBOG00000029544)	ENSSBOG00000030670	STX8 (ENSSBOG00000027719)	NTN1 (ENSSBOG00000022854)	PIK3R5 (ENSSBOG00000020406)	PIK3R6 (ENSSBOG00000028519)	SPDYE4 (ENSSBOG00000036074)	CCDC42 (ENSSBOG00000022061)	ENSSBOG00000020174 #22	MYH10 (ENSSBOG00000036165)	NDEL1 (ENSSBOG00000023939)	RNF222 (ENSSBOG00000019540)	ENSSBOG00000020294	KRBA2 (ENSSBOG00000032409)	ODF4 (ENSSBOG00000030045)	ARHGEF15 (ENSSBOG00000019629)	SLC25A35 (ENSSBOG00000033254)	RANGRF (ENSSBOG00000014092)	PFAS (ENSSBOG00000035060)	CTC1 (ENSSBOG00000033635)	AURKB (ENSSBOG00000023722)	TMEM107 (ENSSBOG00000024275)	ENSSBOG00000033745	VAMP2 (ENSSBOG00000025190)
Marmoset	MODERN SPECIES	2	PPP2R1B (ENSCJAG00000010559)	ENSCJAG00000010680 #8	CFAP68 (ENSCJAG00000010781) #10	ENSCJAG00000082488	CRYAB (ENSCJAG00000010788) #11	HSPB2 (ENSCJAG00000061508) #12	C11orf52 (ENSCJAG00000082918) #13	DIXDC1 (ENSCJAG00000010812) #14	DLAT (ENSCJAG00000010906) #15	PIH1D2 (ENSCJAG00000010954) #16	NKAPD1 (ENSCJAG00000010961)	ENSCJAG00000010975 #18	IL18 (ENSCJAG00000012499) #19	TEX12 (ENSCJAG00000012498) #20	BCO2 (ENSCJAG00000012446) #21	PTS (ENSCJAG00000047808) #22	PLET1 (ENSCJAG00000005902)	ENSCJAG00000071436	ENSCJAG00000081163	NCAM1 (ENSCJAG00000012342) #24	TTC12 (ENSCJAG00000012306)	ANKK1 (ENSCJAG00000048050) #26	DRD2 (ENSCJAG00000012246) #27	ENSCJAG00000080815	ENSCJAG00000051295	TMPRSS5 (ENSCJAG00000012228) #28	ZW10 (ENSCJAG00000012168) #29	USP28 (ENSCJAG00000012053)	HTR3B (ENSCJAG00000012037)	HTR3A (ENSCJAG00000012009)	ZBTB16 (ENSCJAG00000011978)
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002752.x.c.a.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002752.x.c.a.b #22
Bolivian squirrel monkey	MODERN SPECIES	50	FDXACB1 (ENSSBOG00000027732) #9	CFAP68 (ENSSBOG00000029400) #10	CRYAB (ENSSBOG00000030440) #11	HSPB2 (ENSSBOG00000034491) #12	C11orf52 (ENSSBOG00000034419) #13	DIXDC1 (ENSSBOG00000023537) #14	DLAT (ENSSBOG00000023494) #15	PIH1D2 (ENSSBOG00000023388) #16	ENSSBOG00000027846	TIMM8B (ENSSBOG00000022264)	ENSSBOG00000027630 #18	IL18 (ENSSBOG00000022020) #19	TEX12 (ENSSBOG00000035049) #20	ENSSBOG00000022643	BCO2 (ENSSBOG00000022088) #21	ENSSBOG00000031538 #22	PLET1 (ENSSBOG00000029872)	ENSSBOG00000026839	NCAM1 (ENSSBOG00000024448) #24	TTC12 (ENSSBOG00000028986)	ANKK1 (ENSSBOG00000020263) #26	DRD2 (ENSSBOG00000004012) #27	ENSSBOG00000003976	TMPRSS5 (ENSSBOG00000021869) #28	ZW10 (ENSSBOG00000006598) #29	USP28 (ENSSBOG00000028488)	HTR3B (ENSSBOG00000026069)	HTR3A (ENSSBOG00000018920)	ZBTB16 (ENSSBOG00000032604)	NNMT (ENSSBOG00000032617)	ENSSBOG00000030536
Cebidae	ANCESTRAL SPECIES		ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a.a.b #18	ENSGT00390000010003.w.a.a.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x.c.b #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000164522.c.b	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Cebidae_a	ANCESTRAL SPECIES	22	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a.a.b #18	ENSGT00390000010003.w.a.a.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x.c.b #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000164522.c.b	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Capuchin	MODERN SPECIES	28													IL18 (ENSCCAG00000037633) #19	TEX12 (ENSCCAG00000025286) #20	BCO2 (ENSCCAG00000025998) #21	PTS (ENSCCAG00000020748) #22	PLET1 (ENSCCAG00000033048)	NCAM1 (ENSCCAG00000035823) #24	TTC12 (ENSCCAG00000034913)	ANKK1 (ENSCCAG00000037007) #26	DRD2 (ENSCCAG00000019854) #27	ENSCCAG00000028022	TMPRSS5 (ENSCCAG00000021473) #28	ZW10 (ENSCCAG00000020627) #29	ENSCCAG00000032064	HTR3B (ENSCCAG00000035522)	HTR3A (ENSCCAG00000022462)	ZBTB16 (ENSCCAG00000001377)	NNMT (ENSCCAG00000019545)	C11orf71 (ENSCCAG00000033433)	RBM7 (ENSCCAG00000036534)
Mas night monkey	MODERN SPECIES	527	FDXACB1 (ENSANAG00000022744) #9	CFAP68 (ENSANAG00000036303) #10	CRYAB (ENSANAG00000024269) #11	HSPB2 (ENSANAG00000020457) #12	ENSANAG00000033624	C11orf52 (ENSANAG00000023870) #13	DIXDC1 (ENSANAG00000037841) #14	DLAT (ENSANAG00000026255) #15	PIH1D2 (ENSANAG00000021420) #16	NKAPD1 (ENSANAG00000024260)	TIMM8B (ENSANAG00000033969)	ENSANAG00000023287 #18	IL18 (ENSANAG00000031887) #19	TEX12 (ENSANAG00000035554) #20	BCO2 (ENSANAG00000038279) #21	ENSANAG00000024074 #22	PLET1 (ENSANAG00000037883)	NCAM1 (ENSANAG00000029943) #24	TTC12 (ENSANAG00000035548)	ANKK1 (ENSANAG00000029122) #26	DRD2 (ENSANAG00000031378) #27	ENSANAG00000028923	TMPRSS5 (ENSANAG00000022545) #28	ZW10 (ENSANAG00000033796) #29	USP28 (ENSANAG00000024006)	HTR3B (ENSANAG00000025924)	HTR3A (ENSANAG00000016907)	ZBTB16 (ENSANAG00000029870)	NNMT (ENSANAG00000032401)	C11orf71 (ENSANAG00000034041)	ENSANAG00000031879
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000160799	ENSGT00940000154101.a	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000153648.a	ENSGT00390000010256	ENSGT00390000016794.b.mb.a.b	ENSGT01050000244848.A.a.g.b	ENSGT01050000244848.A.a.g.a	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00910000147456	ENSGT00560000078504	ENSGT00390000000539	ENSGT00940000155890	ENSGT00390000002752.x.d #22	ENSGT00940000158542	ENSGT00390000016988.b	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b	ENSGT00940000157608	ENSGT00940000158179	ENSGT00940000153239.A.a	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126	ENSGT00390000004553.m.a.b	ENSGT00940000157295	ENSGT00940000156532	ENSGT00720000108792.B
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000160544	ENSGT01040000240451.a.a	ENSGT00940000160799	ENSGT00940000154101.a	ENSGT00940000158887	ENSGT01050000244890.a.b.a	ENSGT00940000153648.a	ENSGT00390000010256	ENSGT00390000016794.b.mb.a.b	ENSGT01050000244848.A.a.g.b	ENSGT01050000244848.A.a.g.a	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539	ENSGT00940000155890	ENSGT00390000002752.x.d #22	ENSGT00940000158542	ENSGT00390000016988.b	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b	ENSGT00940000157608	ENSGT00940000158179	ENSGT00940000153239.A.a	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126	ENSGT00390000004553.m.a.b	ENSGT00940000157295	ENSGT00940000156532	ENSGT00720000108792.B
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00940000156180	ENSGT00390000001225.m	ENSGT00940000158091	ENSGT00940000160544	ENSGT01040000240451.a.a	ENSGT00940000160799	ENSGT00940000154101.a	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000153648.a	ENSGT00390000016794.b.mb.a.a	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539	ENSGT00940000155890	ENSGT00390000002752.x.d #22	ENSGT00940000158542	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b	ENSGT00940000157608	ENSGT00940000158179	ENSGT00940000153239.A.a	ENSGT00390000015276	ENSGT00940000156882	ENSGT00390000008926	ENSGT00940000155126	ENSGT00390000004553.m.a.b	ENSGT00940000157295	ENSGT00940000156532	ENSGT00720000108792.B	ENSGT00940000155053
Capuchin	MODERN SPECIES	89												RUFY4 (ENSCCAG00000036887)	TNS1 (ENSCCAG00000037646)	TNP1 (ENSCCAG00000030466)	IGFBP5 (ENSCCAG00000035731)	ENSCCAG00000033782 #22	IGFBP2 (ENSCCAG00000032963)	ENSCCAG00000020405	ENSCCAG00000021500	SMARCAL1 (ENSCCAG00000022646)	ASNA1 (ENSCCAG00000020440)	MARCHF4 (ENSCCAG00000031877)	XRCC5 (ENSCCAG00000027147)	ENSCCAG00000020388	TMEM169 (ENSCCAG00000030518)	PECR (ENSCCAG00000028783)	ENSCCAG00000031458	MREG (ENSCCAG00000034986)	FN1 (ENSCCAG00000021281)	ENSCCAG00000022620	ABCA12 (ENSCCAG00000029993)
Bolivian squirrel monkey	MODERN SPECIES	56	USP37 (ENSSBOG00000019926)	VIL1 (ENSSBOG00000031003)	CTDSP1 (ENSSBOG00000033449)	SLC11A1 (ENSSBOG00000035738)	CATIP (ENSSBOG00000036075)	PNKD (ENSSBOG00000036000)	TMBIM1 (ENSSBOG00000029929)	AAMP (ENSSBOG00000023993)	ENSSBOG00000032077	RUFY4 (ENSSBOG00000002350)	TNS1 (ENSSBOG00000022703)	ENSSBOG00000033112	ENSSBOG00000029951	TNP1 (ENSSBOG00000033620)	IGFBP5 (ENSSBOG00000019704)	ENSSBOG00000030539 #22	ENSSBOG00000019110	ENSSBOG00000021060	RPL37A (ENSSBOG00000032570)	SMARCAL1 (ENSSBOG00000023338)	MARCHF4 (ENSSBOG00000031621)	XRCC5 (ENSSBOG00000029325)	TMEM169 (ENSSBOG00000035035)	ENSSBOG00000022001	MREG (ENSSBOG00000030269)	FN1 (ENSSBOG00000030941)	ATIC (ENSSBOG00000035246)	ABCA12 (ENSSBOG00000021012)	BARD1 (ENSSBOG00000024817)	VWC2L (ENSSBOG00000027487)	SPAG16 (ENSSBOG00000028079)
Mas night monkey	MODERN SPECIES	357	SLC11A1 (ENSANAG00000038479)	CATIP (ENSANAG00000035336)	PNKD (ENSANAG00000019661)	TMBIM1 (ENSANAG00000020355)	AAMP (ENSANAG00000034096)	ENSANAG00000022998	CXCR1 (ENSANAG00000009008)	CXCR2 (ENSANAG00000027046)	RUFY4 (ENSANAG00000022643)	TNS1 (ENSANAG00000019397)	ENSANAG00000026120	ENSANAG00000031237	TNP1 (ENSANAG00000029968)	ENSANAG00000007590	IGFBP5 (ENSANAG00000025346)	ENSANAG00000037097 #22	IGFBP2 (ENSANAG00000024221)	ENSANAG00000034888	ENSANAG00000033950	SMARCAL1 (ENSANAG00000034980)	MARCHF4 (ENSANAG00000027574)	ENSANAG00000035228	XRCC5 (ENSANAG00000028373)	TMEM169 (ENSANAG00000022360)	PECR (ENSANAG00000020624)	ENSANAG00000026766	FN1 (ENSANAG00000027282)	ENSANAG00000020375	ABCA12 (ENSANAG00000035285)	BARD1 (ENSANAG00000026965)	ENSANAG00000034992
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Vervet Monkey	MODERN SPECIES		PPP2R1B (ENSCSAG00000002887)	ALG9 (ENSCSAG00000002882) #8	FDXACB1 (ENSCSAG00000002878) #9	CFAP68 (ENSCSAG00000002874) #10	CRYAB (ENSCSAG00000002867) #11	HSPB2 (ENSCSAG00000002865) #12	C11orf52 (ENSCSAG00000002861) #13	DIXDC1 (ENSCSAG00000002858) #14	ENSCSAG00000002846 #15	PIH1D2 (ENSCSAG00000002827) #16	NKAPD1 (ENSCSAG00000002825)	TIMM8B (ENSCSAG00000002824)	ENSCSAG00000002821 #18	IL18 (ENSCSAG00000002819) #19	BCO2 (ENSCSAG00000002818) #21	PTS (ENSCSAG00000002816) #22	ENSCSAG00000000598	NCAM1 (ENSCSAG00000002814) #24	TTC12 (ENSCSAG00000002812)	DRD2 (ENSCSAG00000002807) #27	TMPRSS5 (ENSCSAG00000002803) #28	ZW10 (ENSCSAG00000002794) #29	CLDN25 (ENSCSAG00000000597)	USP28 (ENSCSAG00000002785)	ENSCSAG00000002782	HTR3B (ENSCSAG00000002779)	HTR3A (ENSCSAG00000002771)	ZBTB16 (ENSCSAG00000002761)	NNMT (ENSCSAG00000002757)	C11orf71 (ENSCSAG00000000596)	RBM7 (ENSCSAG00000002756)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000154314.k.b.b.b.a	ENSGT00390000010003.w.b #18	ENSGT00950000182913.A.a #21	ENSGT00940000170702.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00910000146938	ENSGT00390000007962
Macaca	ANCESTRAL SPECIES	2	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00940000154314.k.b.b.b.a	ENSGT00950000182913.A.a #21	ENSGT00940000170702.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00910000146938	ENSGT00390000007962
Macaca_a	ANCESTRAL SPECIES	3	ENSGT00950000183090.D #8	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000170702.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT01100000263493.a.a.a.b.a.a.b.b.a.a.a.a.a.a.a.a.b.b	ENSGT00910000146938	ENSGT00390000007962	ENSGT00870000136493.d
Crab-eating macaque	MODERN SPECIES	5	CFAP68 (ENSMFAG00000000736) #10	ENSMFAG00000003898 #12	CRYAB (ENSMFAG00000034267) #11	C11orf52 (ENSMFAG00000064854) #13	DIXDC1 (ENSMFAG00000043024) #14	ENSMFAG00000058006	ENSMFAG00000063524	PIH1D2 (ENSMFAG00000014227) #16	NKAPD1 (ENSMFAG00000044738)	TIMM8B (ENSMFAG00000051190)	SDHD (ENSMFAG00000043016) #18	IL18 (ENSMFAG00000040966) #19	TEX12 (ENSMFAG00000002760) #20	BCO2 (ENSMFAG00000037360) #21	ENSMFAG00000049402	PTS (ENSMFAG00000035549) #22	PLET1 (ENSMFAG00000044792)	NCAM1 (ENSMFAG00000044864) #24	TTC12 (ENSMFAG00000001067)	DRD2 (ENSMFAG00000043416) #27	ZW10 (ENSMFAG00000005588) #29	USP28 (ENSMFAG00000042145)	HTR3B (ENSMFAG00000002022)	HTR3A (ENSMFAG00000044451)	ENSMFAG00000065596	ZBTB16 (ENSMFAG00000008415)	NNMT (ENSMFAG00000036328)	ENSMFAG00000050426	ENSMFAG00000048364	C11orf71 (ENSMFAG00000056584)	RBM7 (ENSMFAG00000000965)
Rhesus	MODERN SPECIES	5	ALG9 (ENSMMUG00000014003) #8	CFAP68 (ENSMMUG00000053898) #10	HSPB2 (ENSMMUG00000058804) #12	CRYAB (ENSMMUG00000022133) #11	C14H11orf52 (ENSMMUG00000063234) #13	DIXDC1 (ENSMMUG00000017565) #14	DLAT (ENSMMUG00000017568) #15	PIH1D2 (ENSMMUG00000019419) #16	NKAPD1 (ENSMMUG00000019421)	TIMM8B (ENSMMUG00000043558)	SDHD (ENSMMUG00000015247) #18	ENSMMUG00000062751	IL18 (ENSMMUG00000064111) #19	TEX12 (ENSMMUG00000057431) #20	BCO2 (ENSMMUG00000015249) #21	PTS (ENSMMUG00000015255) #22	PLET1 (ENSMMUG00000057633)	ENSMMUG00000050981	NCAM1 (ENSMMUG00000004688) #24	TTC12 (ENSMMUG00000014328)	DRD2 (ENSMMUG00000014334) #27	TMPRSS5 (ENSMMUG00000030906) #28	ZW10 (ENSMMUG00000023772) #29	ENSMMUG00000043523	CLDN25 (ENSMMUG00000053754)	USP28 (ENSMMUG00000023773)	HTR3B (ENSMMUG00000007079)	HTR3A (ENSMMUG00000007080)	ZBTB16 (ENSMMUG00000007085)	NNMT (ENSMMUG00000007086)	ENSMMUG00000052205
Pig-tailed macaque	MODERN SPECIES	204	FDXACB1 (ENSMNEG00000041539) #9	CFAP68 (ENSMNEG00000039043) #10	CRYAB (ENSMNEG00000037606) #11	HSPB2 (ENSMNEG00000032553) #12	C11orf52 (ENSMNEG00000039595) #13	DIXDC1 (ENSMNEG00000029280) #14	ENSMNEG00000029907 #15	PIH1D2 (ENSMNEG00000035252) #16	NKAPD1 (ENSMNEG00000042583)	TIMM8B (ENSMNEG00000031105)	ENSMNEG00000036973 #18	IL18 (ENSMNEG00000042906) #19	TEX12 (ENSMNEG00000041137) #20	ENSMNEG00000044106	BCO2 (ENSMNEG00000042740) #21	PTS (ENSMNEG00000044409) #22	PLET1 (ENSMNEG00000044600)	ENSMNEG00000029485	NCAM1 (ENSMNEG00000037984) #24	TTC12 (ENSMNEG00000032462)	ANKK1 (ENSMNEG00000038963) #26	DRD2 (ENSMNEG00000041852) #27	TMPRSS5 (ENSMNEG00000033735) #28	ENSMNEG00000043213	ZW10 (ENSMNEG00000027148) #29	USP28 (ENSMNEG00000043630)	HTR3B (ENSMNEG00000031591)	HTR3A (ENSMNEG00000031796)	RCOR3 (ENSMNEG00000028882)	TRAF5 (ENSMNEG00000039191)	ENSMNEG00000039735
Cercopithecinae_b	ANCESTRAL SPECIES	21	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a.d	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00910000146938	ENSGT00390000007962
Olive baboon	MODERN SPECIES	3	PPP2R1B (ENSPANG00000010187)	ALG9 (ENSPANG00000019268) #8	CFAP68 (ENSPANG00000024229) #10	CRYAB (ENSPANG00000029689) #11	ENSPANG00000007280 #12	C11orf52 (ENSPANG00000048111) #13	DIXDC1 (ENSPANG00000006433) #14	DLAT (ENSPANG00000004640) #15	PIH1D2 (ENSPANG00000020254) #16	NKAPD1 (ENSPANG00000004948)	TIMM8B (ENSPANG00000048907)	SDHD (ENSPANG00000036184) #18	IL18 (ENSPANG00000012221) #19	TEX12 (ENSPANG00000009659) #20	BCO2 (ENSPANG00000006648) #21	PTS (ENSPANG00000024677) #22	PLET1 (ENSPANG00000006432)	NCAM1 (ENSPANG00000016065) #24	TTC12 (ENSPANG00000010676)	DRD2 (ENSPANG00000005708) #27	TMPRSS5 (ENSPANG00000007319) #28	ZW10 (ENSPANG00000019266) #29	USP28 (ENSPANG00000019172)	HTR3B (ENSPANG00000007181)	HTR3A (ENSPANG00000014346)	ZBTB16 (ENSPANG00000005924)	NNMT (ENSPANG00000013188)	C11orf71 (ENSPANG00000008843)	RBM7 (ENSPANG00000009431)	REXO2 (ENSPANG00000010675)	NXPE4 (ENSPANG00000005599)
Cercopithecinae_d	ANCESTRAL SPECIES	45	ENSGT00390000016988.a.a.a.b.a.a.d	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00390000010003.w.b #18	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00910000146938	ENSGT00390000007962
Sooty mangabey	MODERN SPECIES	138	FDXACB1 (ENSCATG00000035600) #9	CFAP68 (ENSCATG00000040514) #10	CRYAB (ENSCATG00000033292) #11	HSPB2 (ENSCATG00000031737) #12	C11orf52 (ENSCATG00000015191) #13	DIXDC1 (ENSCATG00000034970) #14	ENSCATG00000029342 #15	PIH1D2 (ENSCATG00000037941) #16	NKAPD1 (ENSCATG00000040296)	TIMM8B (ENSCATG00000043002)	SDHD (ENSCATG00000017950) #18	IL18 (ENSCATG00000043884) #19	TEX12 (ENSCATG00000041244) #20	ENSCATG00000040959	BCO2 (ENSCATG00000040955) #21	PTS (ENSCATG00000043932) #22	PLET1 (ENSCATG00000021077)	ENSCATG00000038711	NCAM1 (ENSCATG00000032945) #24	TTC12 (ENSCATG00000036329)	ANKK1 (ENSCATG00000021625) #26	DRD2 (ENSCATG00000040093) #27	TMPRSS5 (ENSCATG00000039143) #28	ZW10 (ENSCATG00000029954) #29	USP28 (ENSCATG00000031506)	HTR3B (ENSCATG00000044851)	HTR3A (ENSCATG00000034214)	ZBTB16 (ENSCATG00000039272)	NNMT (ENSCATG00000034839)	ENSCATG00000020795	C11orf71 (ENSCATG00000040083)
Drill	MODERN SPECIES	621	ALG9 (ENSMLEG00000016646) #8	CFAP68 (ENSMLEG00000028912) #10	ENSMLEG00000040130	CRYAB (ENSMLEG00000027751) #11	HSPB2 (ENSMLEG00000006276) #12	C11orf52 (ENSMLEG00000030037) #13	DIXDC1 (ENSMLEG00000035610) #14	ENSMLEG00000030620 #15	PIH1D2 (ENSMLEG00000043982) #16	NKAPD1 (ENSMLEG00000040297)	TIMM8B (ENSMLEG00000035403)	ENSMLEG00000036851 #18	IL18 (ENSMLEG00000033151) #19	BCO2 (ENSMLEG00000031554) #21	ENSMLEG00000029628	PTS (ENSMLEG00000038722) #22	PLET1 (ENSMLEG00000028809)	NCAM1 (ENSMLEG00000028968) #24	ENSMLEG00000041064	TTC12 (ENSMLEG00000038689)	ANKK1 (ENSMLEG00000030592) #26	DRD2 (ENSMLEG00000044244) #27	ENSMLEG00000035644 #28	ZW10 (ENSMLEG00000031557) #29	USP28 (ENSMLEG00000020953)	HTR3B (ENSMLEG00000041346)	HTR3A (ENSMLEG00000038776)	ZBTB16 (ENSMLEG00000027152)	NNMT (ENSMLEG00000040550)	C11orf71 (ENSMLEG00000042004)	RBM7 (ENSMLEG00000041953)
Rhinopithecus	ANCESTRAL SPECIES	30	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943.i #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT01030000238113	ENSGT00390000010003.w.a #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00910000147129	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Black snub-nosed monkey	MODERN SPECIES	722	FDXACB1 (ENSRBIG00000014195) #9	CFAP68 (ENSRBIG00000038460) #10	CRYAB (ENSRBIG00000028679) #11	HSPB2 (ENSRBIG00000029981) #12	C11orf52 (ENSRBIG00000028548) #13	DIXDC1 (ENSRBIG00000038176) #14	ENSRBIG00000028596 #15	PIH1D2 (ENSRBIG00000040972) #16	NKAPD1 (ENSRBIG00000037346)	ENSRBIG00000043827	SDHD (ENSRBIG00000041125) #18	IL18 (ENSRBIG00000037349) #19	TEX12 (ENSRBIG00000035463) #20	ENSRBIG00000032233	BCO2 (ENSRBIG00000020663) #21	PTS (ENSRBIG00000043363) #22	ENSRBIG00000042995	ENSRBIG00000042986	NCAM1 (ENSRBIG00000013766) #24	TTC12 (ENSRBIG00000043217)	ANKK1 (ENSRBIG00000028582) #26	DRD2 (ENSRBIG00000027761) #27	TMPRSS5 (ENSRBIG00000031311) #28	ZW10 (ENSRBIG00000030358) #29	USP28 (ENSRBIG00000044717)	HTR3B (ENSRBIG00000044677)	HTR3A (ENSRBIG00000033910)	ZBTB16 (ENSRBIG00000035195)	NNMT (ENSRBIG00000041263)	C11orf71 (ENSRBIG00000019664)	RBM7 (ENSRBIG00000044762)
Golden snub-nosed monkey	MODERN SPECIES	2347	FDXACB1 (ENSRROG00000045453) #9	CFAP68 (ENSRROG00000035679) #10	CRYAB (ENSRROG00000028771) #11	HSPB2 (ENSRROG00000005229) #12	C11orf52 (ENSRROG00000041617) #13	DIXDC1 (ENSRROG00000027413) #14	ENSRROG00000033703 #15	PIH1D2 (ENSRROG00000033040) #16	NKAPD1 (ENSRROG00000035307)	TIMM8B (ENSRROG00000031042)	SDHD (ENSRROG00000035620) #18	IL18 (ENSRROG00000044274) #19	TEX12 (ENSRROG00000034475) #20	BCO2 (ENSRROG00000028850) #21	ENSRROG00000029513	PTS (ENSRROG00000033564) #22	PLET1 (ENSRROG00000033047)	ENSRROG00000033019	NCAM1 (ENSRROG00000043461) #24	TTC12 (ENSRROG00000045357)	ANKK1 (ENSRROG00000028764) #26	DRD2 (ENSRROG00000044184) #27
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.w.a.c.b #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Hominidae	ANCESTRAL SPECIES	1	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479.p	ENSGT00390000010003.w.a.c.b #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479.p	ENSGT00390000010003.w.a.c.b #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00910000146938
Gorilla	MODERN SPECIES	2	FDXACB1 (ENSGGOG00000037643) #9	ENSGGOG00000024664 #10	ENSGGOG00000014264	CRYAB (ENSGGOG00000005167) #11	C11orf52 (ENSGGOG00000011632) #13	DIXDC1 (ENSGGOG00000002510) #14	DLAT (ENSGGOG00000002519) #15	ENSGGOG00000041943	PIH1D2 (ENSGGOG00000027588) #16	NKAPD1 (ENSGGOG00000003231)	TIMM8B (ENSGGOG00000041607)	ENSGGOG00000016350 #18	IL18 (ENSGGOG00000015869) #19	BCO2 (ENSGGOG00000011413) #21	ENSGGOG00000011420	PTS (ENSGGOG00000011422) #22	PLET1 (ENSGGOG00000028352)	NCAM1 (ENSGGOG00000013097) #24	TTC12 (ENSGGOG00000003228)	ANKK1 (ENSGGOG00000003237) #26	DRD2 (ENSGGOG00000003244) #27	TMPRSS5 (ENSGGOG00000026807) #28	ZW10 (ENSGGOG00000015283) #29	ENSGGOG00000027059	USP28 (ENSGGOG00000005119)	HTR3B (ENSGGOG00000005084)	HTR3A (ENSGGOG00000014709)	ZBTB16 (ENSGGOG00000000319)	NNMT (ENSGGOG00000003749)	ENSGGOG00000009932	ENSGGOG00000038884
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479.p	ENSGT00390000010003.w.a.c.b #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00940000154314.k.b.b.b.a.a	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00910000146938
Human	MODERN SPECIES	2	ENSG00000258529	FDXACB1 (ENSG00000255561) #9	CFAP68 (ENSG00000137720) #10	CRYAB (ENSG00000109846) #11	HSPB2 (ENSG00000170276) #12	C11orf52 (ENSG00000149300) #13	DIXDC1 (ENSG00000150764) #14	DLAT (ENSG00000150768) #15	PIH1D2 (ENSG00000150773) #16	NKAPD1 (ENSG00000150776)	TIMM8B (ENSG00000150779)	SDHD (ENSG00000204370) #18	IL18 (ENSG00000150782) #19	TEX12 (ENSG00000150783) #20	BCO2 (ENSG00000197580) #21	PTS (ENSG00000150787) #22	PLET1 (ENSG00000188771)	NCAM1 (ENSG00000149294) #24	TTC12 (ENSG00000149292)	ANKK1 (ENSG00000170209) #26	DRD2 (ENSG00000149295) #27	TMPRSS5 (ENSG00000166682) #28	ZW10 (ENSG00000086827) #29	CLDN25 (ENSG00000228607)	USP28 (ENSG00000048028)	HTR3B (ENSG00000149305)	HTR3A (ENSG00000166736)	ZBTB16 (ENSG00000109906)	NNMT (ENSG00000166741)	C11orf71 (ENSG00000180425)	RBM7 (ENSG00000076053)
Pan	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00390000016988.a.a.a.b.a.a	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479.p	ENSGT00390000001053 #19	ENSGT00390000010003.w.a.c.b #18	ENSGT00940000154314.k.b.b.b.a.a	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00530000063801.a.m.b.a	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Bonobo	MODERN SPECIES	2	FDXACB1 (ENSPPAG00000030196) #9	ENSPPAG00000032743 #10	CRYAB (ENSPPAG00000042685) #11	HSPB2 (ENSPPAG00000043092) #12	C11orf52 (ENSPPAG00000035203) #13	DIXDC1 (ENSPPAG00000006134) #14	DLAT (ENSPPAG00000043791) #15	ENSPPAG00000043430	PIH1D2 (ENSPPAG00000043313) #16	NKAPD1 (ENSPPAG00000025905)	TIMM8B (ENSPPAG00000035790)	SDHD (ENSPPAG00000040484) #18	IL18 (ENSPPAG00000028122) #19	BCO2 (ENSPPAG00000041214) #21	ENSPPAG00000038476	PTS (ENSPPAG00000031772) #22	PLET1 (ENSPPAG00000027344)	NCAM1 (ENSPPAG00000036886) #24	TTC12 (ENSPPAG00000042509)	ANKK1 (ENSPPAG00000026996) #26	DRD2 (ENSPPAG00000029985) #27	TMPRSS5 (ENSPPAG00000038681) #28	ZW10 (ENSPPAG00000031453) #29	CLDN25 (ENSPPAG00000007965)	ENSPPAG00000029813	USP28 (ENSPPAG00000042077)	HTR3B (ENSPPAG00000027697)	HTR3A (ENSPPAG00000023311)	ZBTB16 (ENSPPAG00000034578)	NNMT (ENSPPAG00000029095)	ENSPPAG00000027006
Chimpanzee	MODERN SPECIES	2	CFAP68 (ENSPTRG00000004273) #10	ENSPTRG00000045361	CRYAB (ENSPTRG00000004274) #11	HSPB2 (ENSPTRG00000034105) #12	C11H11orf52 (ENSPTRG00000004275) #13	DIXDC1 (ENSPTRG00000004278) #14	DLAT (ENSPTRG00000004279) #15	ENSPTRG00000050495	PIH1D2 (ENSPTRG00000004280) #16	NKAPD1 (ENSPTRG00000004281)	TIMM8B (ENSPTRG00000047297)	SDHD (ENSPTRG00000043289) #18	IL18 (ENSPTRG00000004284) #19	BCO2 (ENSPTRG00000023726) #21	ENSPTRG00000049295	PTS (ENSPTRG00000004288) #22	PLET1 (ENSPTRG00000004289)	NCAM1 (ENSPTRG00000004291) #24	TTC12 (ENSPTRG00000004292)	ANKK1 (ENSPTRG00000004293) #26	DRD2 (ENSPTRG00000004295) #27	TMPRSS5 (ENSPTRG00000049624) #28	ZW10 (ENSPTRG00000004297) #29	CLDN25 (ENSPTRG00000041604)	ENSPTRG00000050654	USP28 (ENSPTRG00000004299)	HTR3B (ENSPTRG00000004300)	HTR3A (ENSPTRG00000004301)	ZBTB16 (ENSPTRG00000004302)	NNMT (ENSPTRG00000004303)	C11H11orf71 (ENSPTRG00000004304)
Orangutan	MODERN SPECIES	2	ENSPPYG00000001205	ENSPPYG00000039673 #10	ENSPPYG00000003867	CRYAB (ENSPPYG00000003868) #11	HSPB2 (ENSPPYG00000003869) #12	C11orf52 (ENSPPYG00000041167) #13	DIXDC1 (ENSPPYG00000003871) #14	DLAT (ENSPPYG00000003872) #15	PIH1D2 (ENSPPYG00000003873) #16	NKAPD1 (ENSPPYG00000031386)	TIMM8B (ENSPPYG00000003875)	SDHD (ENSPPYG00000003876) #18	IL18 (ENSPPYG00000003877) #19	BCO2 (ENSPPYG00000003878) #21	ENSPPYG00000035589	PTS (ENSPPYG00000003880) #22	PLET1 (ENSPPYG00000003881)	NCAM1 (ENSPPYG00000003883) #24	TTC12 (ENSPPYG00000003884)	ANKK1 (ENSPPYG00000032703) #26	DRD2 (ENSPPYG00000003885) #27	TMPRSS5 (ENSPPYG00000003886) #28	ZW10 (ENSPPYG00000003887) #29	USP28 (ENSPPYG00000003888)	HTR3B (ENSPPYG00000003889)	HTR3A (ENSPPYG00000003890)	ZBTB16 (ENSPPYG00000003891)	NNMT (ENSPPYG00000003892)	ENSPPYG00000003893	RBM7 (ENSPPYG00000003894)	REXO2 (ENSPPYG00000003895)
Gibbon	MODERN SPECIES	5	ALG9 (ENSNLEG00000007274) #8	FDXACB1 (ENSNLEG00000030387) #9	ENSNLEG00000007280 #10	CRYAB (ENSNLEG00000031814) #11	HSPB2 (ENSNLEG00000007286) #12	C11orf52 (ENSNLEG00000007287) #13	DIXDC1 (ENSNLEG00000007288) #14	ENSNLEG00000007289 #15	PIH1D2 (ENSNLEG00000007292) #16	NKAPD1 (ENSNLEG00000007293)	TIMM8B (ENSNLEG00000031701)	IL18 (ENSNLEG00000007295) #19	SDHD (ENSNLEG00000007296) #18	ENSNLEG00000007298	BCO2 (ENSNLEG00000036150) #21	PTS (ENSNLEG00000030110) #22	NCAM1 (ENSNLEG00000007301) #24	TTC12 (ENSNLEG00000007306)	ANKK1 (ENSNLEG00000007308) #26	DRD2 (ENSNLEG00000007309) #27	TMPRSS5 (ENSNLEG00000007310) #28	ZW10 (ENSNLEG00000032579) #29	CLDN25 (ENSNLEG00000007312)	USP28 (ENSNLEG00000007313)	HTR3B (ENSNLEG00000007316)	HTR3A (ENSNLEG00000007317)	ZBTB16 (ENSNLEG00000007319)	NNMT (ENSNLEG00000007321)	ENSNLEG00000029308	RBM7 (ENSNLEG00000029494)	REXO2 (ENSNLEG00000029745)
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Tree shrew	MODERN SPECIES	4979															BCO2 (ENSTBEG00000011590) #21	PTS (ENSTBEG00000011742) #22	ENSTBEG00000011811
Glires	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00950000183066.a.a.b	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Pika	MODERN SPECIES	1595	LAYN (ENSOPRG00000012500)	SIK2 (ENSOPRG00000012522) #7	PPP2R1B (ENSOPRG00000012540)	ALG9 (ENSOPRG00000012566) #8	FDXACB1 (ENSOPRG00000012593) #9	CFAP68 (ENSOPRG00000012601) #10	C11orf52 (ENSOPRG00000012607) #13	DIXDC1 (ENSOPRG00000012616) #14	DLAT (ENSOPRG00000012642) #15	PIH1D2 (ENSOPRG00000012661) #16	NKAPD1 (ENSOPRG00000012681)	TIMM8B (ENSOPRG00000012686)	SDHD (ENSOPRG00000012691) #18	ENSOPRG00000012703 #19	BCO2 (ENSOPRG00000012712) #21	PTS (ENSOPRG00000012726) #22
Rabbit	MODERN SPECIES		LAYN (ENSOCUG00000012904)	SIK2 (ENSOCUG00000012915) #7	PPP2R1B (ENSOCUG00000012930)	FDXACB1 (ENSOCUG00000034621) #9	CFAP68 (ENSOCUG00000029240) #10	CRYAB (ENSOCUG00000012972) #11	HSPB2 (ENSOCUG00000012976) #12	C11orf52 (ENSOCUG00000012977) #13	DIXDC1 (ENSOCUG00000012919) #14	DLAT (ENSOCUG00000015590) #15	PIH1D2 (ENSOCUG00000028144) #16	NKAPD1 (ENSOCUG00000017354)	TIMM8B (ENSOCUG00000017358)	ENSOCUG00000005255 #19	BCO2 (ENSOCUG00000009662) #21	PTS (ENSOCUG00000007360) #22	ENSOCUG00000034626	ENSOCUG00000009672	ENSOCUG00000037757	ENSOCUG00000033775 #23	NCAM1 (ENSOCUG00000006190) #24	TTC12 (ENSOCUG00000011625)	DRD2 (ENSOCUG00000011657) #27	TMPRSS5 (ENSOCUG00000027156) #28	ZW10 (ENSOCUG00000007436) #29	CLDN25 (ENSOCUG00000025517)	USP28 (ENSOCUG00000007441)	HTR3B (ENSOCUG00000029643)	HTR3A (ENSOCUG00000007462)	ZBTB16 (ENSOCUG00000007470)	C11orf71 (ENSOCUG00000003339)
Rodentia	ANCESTRAL SPECIES	1	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Muroidea	ANCESTRAL SPECIES	29	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Murinae	ANCESTRAL SPECIES	3	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Mus	ANCESTRAL SPECIES	4	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Mus_A	ANCESTRAL SPECIES	4	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00860000135752	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Mus_B	ANCESTRAL SPECIES	3	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00860000135752	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Mus_C	ANCESTRAL SPECIES	8	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00900000143181 #23	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00860000135752	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b
Steppe mouse	MODERN SPECIES	2930	Ppp2r1b (ENSMSIG00000007264)	ENSMSIG00000007146 #8	Cfap68 (ENSMSIG00000007099) #10	Hspb2 (ENSMSIG00000007072) #12	Cryab (ENSMSIG00000007024) #11	2310030G06Rik (ENSMSIG00000006999) #13	Dixdc1 (ENSMSIG00000006708) #14	ENSMSIG00000006654 #15	Pih1d2 (ENSMSIG00000006631) #16	Nkapd1 (ENSMSIG00000006601)	Timm8b (ENSMSIG00000006595)	Sdhd (ENSMSIG00000006572) #18	Tex12 (ENSMSIG00000006557) #20	ENSMSIG00000006465 #19	Bco2 (ENSMSIG00000006414) #21	Pts (ENSMSIG00000006352) #22	ENSMSIG00000006308
spretus	MODERN SPECIES	18	Alg9 (MGP_SPRETEiJ_G0033337) #8	Fdxacb1 (MGP_SPRETEiJ_G0033336) #9	Cfap68 (MGP_SPRETEiJ_G0033335) #10	Cryab (MGP_SPRETEiJ_G0033334) #11	Hspb2 (MGP_SPRETEiJ_G0033333) #12	2310030G06Rik (MGP_SPRETEiJ_G0033332) #13	Dixdc1 (MGP_SPRETEiJ_G0033331) #14	Dlat (MGP_SPRETEiJ_G0033330) #15	Pih1d2 (MGP_SPRETEiJ_G0033329) #16	Nkapd1 (MGP_SPRETEiJ_G0033328)	Timm8b (MGP_SPRETEiJ_G0033327)	Sdhd (MGP_SPRETEiJ_G0033326) #18	Il18 (MGP_SPRETEiJ_G0033325) #19	Tex12 (MGP_SPRETEiJ_G0033324) #20	Bco2 (MGP_SPRETEiJ_G0033323) #21	Pts (MGP_SPRETEiJ_G0033322) #22	Plet1 (MGP_SPRETEiJ_G0033321)	MGP_SPRETEiJ_G0033320 #23	Ncam1 (MGP_SPRETEiJ_G0033319) #24	Ttc12 (MGP_SPRETEiJ_G0033318)	Ankk1 (MGP_SPRETEiJ_G0033317) #26	Drd2 (MGP_SPRETEiJ_G0033316) #27	MGP_SPRETEiJ_G0033315	Tmprss5 (MGP_SPRETEiJ_G0033314) #28	Zw10 (MGP_SPRETEiJ_G0033313) #29	Usp28 (MGP_SPRETEiJ_G0033312)	Htr3b (MGP_SPRETEiJ_G0033311)	Htr3a (MGP_SPRETEiJ_G0033310)	Zbtb16 (MGP_SPRETEiJ_G0033309)	Nnmt (MGP_SPRETEiJ_G0033308)	Gm5617 (MGP_SPRETEiJ_G0033307)
Mouse	MODERN SPECIES	18	Alg9 (ENSMUSG00000032059) #8	Fdxacb1 (ENSMUSG00000037845) #9	Cfap68 (ENSMUSG00000037971) #10	Cryab (ENSMUSG00000032060) #11	Hspb2 (ENSMUSG00000038086) #12	2310030G06Rik (ENSMUSG00000032062) #13	Dixdc1 (ENSMUSG00000032064) #14	Dlat (ENSMUSG00000000168) #15	Pih1d2 (ENSMUSG00000000167) #16	Nkapd1 (ENSMUSG00000059820)	Timm8b (ENSMUSG00000039016)	Sdhd (ENSMUSG00000000171) #18	Tex12 (ENSMUSG00000032065) #20	Il18 (ENSMUSG00000039217) #19	Bco2 (ENSMUSG00000032066) #21	Pts (ENSMUSG00000032067) #22	Plet1 (ENSMUSG00000032068)	Rpl10-ps3 (ENSMUSG00000058443)	Ncam1 (ENSMUSG00000039542) #24	Ttc12 (ENSMUSG00000040219)	Ankk1 (ENSMUSG00000032257) #26	Drd2 (ENSMUSG00000032259) #27	Tmprss5 (ENSMUSG00000032268) #28	Zw10 (ENSMUSG00000032264) #29	Usp28 (ENSMUSG00000032267)	Htr3b (ENSMUSG00000008590)	Htr3a (ENSMUSG00000032269)	Zbtb16 (ENSMUSG00000066687)	Nnmt (ENSMUSG00000032271)	Gm5617 (ENSMUSG00000042293)	Rbm7 (ENSMUSG00000042396)
Ryukyu mouse	MODERN SPECIES	18	Alg9 (MGP_CAROLIEiJ_G0032198) #8	Fdxacb1 (MGP_CAROLIEiJ_G0032197) #9	MGP_CAROLIEiJ_G0032196 #10	Cryab (MGP_CAROLIEiJ_G0032195) #11	Hspb2 (MGP_CAROLIEiJ_G0032194) #12	2310030G06Rik (MGP_CAROLIEiJ_G0032193) #13	Dixdc1 (MGP_CAROLIEiJ_G0032192) #14	Dlat (MGP_CAROLIEiJ_G0032191) #15	Pih1d2 (MGP_CAROLIEiJ_G0032190) #16	Nkapd1 (MGP_CAROLIEiJ_G0032189)	Timm8b (MGP_CAROLIEiJ_G0032188)	Sdhd (MGP_CAROLIEiJ_G0032187) #18	Il18 (MGP_CAROLIEiJ_G0032186) #19	Tex12 (MGP_CAROLIEiJ_G0032185) #20	Bco2 (MGP_CAROLIEiJ_G0032184) #21	Pts (MGP_CAROLIEiJ_G0032183) #22	Plet1 (MGP_CAROLIEiJ_G0032182)	MGP_CAROLIEiJ_G0032181 #23	Ncam1 (MGP_CAROLIEiJ_G0032180) #24	Ttc12 (MGP_CAROLIEiJ_G0032179)	Ankk1 (MGP_CAROLIEiJ_G0032178) #26	Drd2 (MGP_CAROLIEiJ_G0032177) #27	MGP_CAROLIEiJ_G0032176	Tmprss5 (MGP_CAROLIEiJ_G0032175) #28	Zw10 (MGP_CAROLIEiJ_G0032174) #29	Usp28 (MGP_CAROLIEiJ_G0032173)	Htr3b (MGP_CAROLIEiJ_G0032172)	Htr3a (MGP_CAROLIEiJ_G0032171)	Zbtb16 (MGP_CAROLIEiJ_G0032170)	Nnmt (MGP_CAROLIEiJ_G0032169)	Gm5617 (MGP_CAROLIEiJ_G0032168)
Shrew mouse	MODERN SPECIES	1	MGP_PahariEiJ_G0015066 #8	Fdxacb1 (MGP_PahariEiJ_G0015065) #9	Cfap68 (MGP_PahariEiJ_G0015064) #10	Cryab (MGP_PahariEiJ_G0015063) #11	Hspb2 (MGP_PahariEiJ_G0015062) #12	2310030G06Rik (MGP_PahariEiJ_G0015061) #13	Dixdc1 (MGP_PahariEiJ_G0015060) #14	Dlat (MGP_PahariEiJ_G0015059) #15	Pih1d2 (MGP_PahariEiJ_G0015058) #16	Nkapd1 (MGP_PahariEiJ_G0015057)	Timm8b (MGP_PahariEiJ_G0015056)	Sdhd (MGP_PahariEiJ_G0015055) #18	Il18 (MGP_PahariEiJ_G0015054) #19	Tex12 (MGP_PahariEiJ_G0015053) #20	Bco2 (MGP_PahariEiJ_G0015052) #21	Pts (MGP_PahariEiJ_G0015051) #22	MGP_PahariEiJ_G0015050	MGP_PahariEiJ_G0015049 #23	Ncam1 (MGP_PahariEiJ_G0015048) #24	Ttc12 (MGP_PahariEiJ_G0015047)	MGP_PahariEiJ_G0015046 #26	Drd2 (MGP_PahariEiJ_G0015045) #27	MGP_PahariEiJ_G0015044	Tmprss5 (MGP_PahariEiJ_G0015043) #28	Zw10 (MGP_PahariEiJ_G0015042) #29	Usp28 (MGP_PahariEiJ_G0015041)	Htr3b (MGP_PahariEiJ_G0015040)	Htr3a (MGP_PahariEiJ_G0015039)	Zbtb16 (MGP_PahariEiJ_G0015038)	Nnmt (MGP_PahariEiJ_G0015037)	Gm5617 (MGP_PahariEiJ_G0015036)
Rat	MODERN SPECIES	18	Ppp2r1b (ENSRNOG00000010922)	Alg9 (ENSRNOG00000010877) #8	Fdxacb1 (ENSRNOG00000010743) #9	Cfap68 (ENSRNOG00000030962) #10	Cryab (ENSRNOG00000010524) #11	Hspb2 (ENSRNOG00000051792) #12	Dixdc1 (ENSRNOG00000010260) #14	Dlat (ENSRNOG00000009994) #15	Pih1d2 (ENSRNOG00000009965) #16	Nkapd1 (ENSRNOG00000009958)	Timm8b (ENSRNOG00000009888)	Sdhd (ENSRNOG00000022980) #18	Tex12 (ENSRNOG00000049470) #20	Il18 (ENSRNOG00000009848) #19	Bco2 (ENSRNOG00000038746) #21	Pts (ENSRNOG00000009250) #22	Plet1 (ENSRNOG00000024346)	Ncam1 (ENSRNOG00000031890) #24	Ttc12 (ENSRNOG00000008595)	Ankk1 (ENSRNOG00000025037) #26	Drd2 (ENSRNOG00000008428) #27	Tmprss5 (ENSRNOG00000008058) #28	Zw10 (ENSRNOG00000054479) #29	Cldn25 (ENSRNOG00000057454)	Usp28 (ENSRNOG00000007325)	Htr3b (ENSRNOG00000006920)	Htr3a (ENSRNOG00000006595)	Zbtb16 (ENSRNOG00000029980)	Nnmt (ENSRNOG00000005930)	C8h11orf71 (ENSRNOG00000005918)	Rbm7 (ENSRNOG00000005710)
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479.hb.b	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479.hb.b	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Chinese hamster chok1gshd	MODERN SPECIES	284	Alg9 (ENSCGRG00001015585) #8	Fdxacb1 (ENSCGRG00001023825) #9	Cfap68 (ENSCGRG00001024590) #10	Cryab (ENSCGRG00001014861) #11	Hspb2 (ENSCGRG00001018827) #12	2310030G06Rik (ENSCGRG00001020385) #13	Dixdc1 (ENSCGRG00001024992) #14	Dlat (ENSCGRG00001001078) #15	Pih1d2 (ENSCGRG00001012956) #16	Nkapd1 (ENSCGRG00001016550)	ENSCGRG00001017302	Sdhd (ENSCGRG00001022631) #18	Il18 (ENSCGRG00001019119) #19	Tex12 (ENSCGRG00001020522) #20	Bco2 (ENSCGRG00001022068) #21	Pts (ENSCGRG00001000740) #22	Plet1 (ENSCGRG00001016581)	Ncam1 (ENSCGRG00001008468) #24	Ttc12 (ENSCGRG00001017552)	Ankk1 (ENSCGRG00001015626) #26	Drd2 (ENSCGRG00001020389) #27	ENSCGRG00001012459	Tmprss5 (ENSCGRG00001023126) #28	Zw10 (ENSCGRG00001023701) #29	ENSCGRG00001000915	Usp28 (ENSCGRG00001023338)	Htr3b (ENSCGRG00001023267)	Htr3a (ENSCGRG00001002154)	Zbtb16 (ENSCGRG00001024806)	Nnmt (ENSCGRG00001013317)	Gm5617 (ENSCGRG00001001466)
Golden Hamster	MODERN SPECIES	635	Alg9 (ENSMAUG00000019745) #8	Fdxacb1 (ENSMAUG00000019310) #9	Cfap68 (ENSMAUG00000017205) #10	Cryab (ENSMAUG00000018431) #11	Hspb2 (ENSMAUG00000014712) #12	2310030G06Rik (ENSMAUG00000018715) #13	Dixdc1 (ENSMAUG00000005681) #14	Dlat (ENSMAUG00000014831) #15	Pih1d2 (ENSMAUG00000014605) #16	Nkapd1 (ENSMAUG00000014817)	Timm8b (ENSMAUG00000012546)	Sdhd (ENSMAUG00000018722) #18	Il18 (ENSMAUG00000013370) #19	Tex12 (ENSMAUG00000021667) #20	Bco2 (ENSMAUG00000019834) #21	Pts (ENSMAUG00000018576) #22	Plet1 (ENSMAUG00000011494)	ENSMAUG00000014097 #23	Ncam1 (ENSMAUG00000021119) #24	Ttc12 (ENSMAUG00000013995)	Drd2 (ENSMAUG00000011091) #27	Tmprss5 (ENSMAUG00000022000) #28	Zw10 (ENSMAUG00000010543) #29	Usp28 (ENSMAUG00000008295)	Htr3b (ENSMAUG00000010708)	Htr3a (ENSMAUG00000010378)	Zbtb16 (ENSMAUG00000010982)	Nnmt (ENSMAUG00000018665)	ENSMAUG00000017938	Rexo2 (ENSMAUG00000014576)	Nxpe4 (ENSMAUG00000020773)
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000167885	ENSGT00940000155479.hb.b	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Prairie vole	MODERN SPECIES	13	Alg9 (ENSMOCG00000021765) #8	Fdxacb1 (ENSMOCG00000011835) #9	Cfap68 (ENSMOCG00000007974) #10	Cryab (ENSMOCG00000017749) #11	Hspb2 (ENSMOCG00000016153) #12	2310030G06Rik (ENSMOCG00000012607) #13	Dixdc1 (ENSMOCG00000001184) #14	Dlat (ENSMOCG00000019261) #15	Pih1d2 (ENSMOCG00000006508) #16	ENSMOCG00000003822	ENSMOCG00000017265	Sdhd (ENSMOCG00000003892) #18	Il18 (ENSMOCG00000001653) #19	Tex12 (ENSMOCG00000001735) #20	Bco2 (ENSMOCG00000018049) #21	Pts (ENSMOCG00000014219) #22	ENSMOCG00000002086	Ncam1 (ENSMOCG00000020055) #24	Ttc12 (ENSMOCG00000018797)	DRD2 (ENSMOCG00000013394) #27	Tmprss5 (ENSMOCG00000019745) #28	Zw10 (ENSMOCG00000009519) #29	Usp28 (ENSMOCG00000017498)	Htr3b (ENSMOCG00000007763)	Htr3a (ENSMOCG00000017513)	ENSMOCG00000007442	Zbtb16 (ENSMOCG00000001402)	Nnmt (ENSMOCG00000020571)	Rbm7 (ENSMOCG00000009674)	Rexo2 (ENSMOCG00000009016)	Nxpe4 (ENSMOCG00000020704)
Northern American deer mouse	MODERN SPECIES	20	Fdxacb1 (ENSPEMG00000020188) #9	Cfap68 (ENSPEMG00000020211) #10	Cryab (ENSPEMG00000020226) #11	ENSPEMG00000031217	Hspb2 (ENSPEMG00000020233) #12	2310030G06Rik (ENSPEMG00000030577) #13	Dixdc1 (ENSPEMG00000000051) #14	Dlat (ENSPEMG00000008131) #15	Pih1d2 (ENSPEMG00000008747) #16	Nkapd1 (ENSPEMG00000009196)	Timm8b (ENSPEMG00000029314)	Sdhd (ENSPEMG00000024731) #18	Il18 (ENSPEMG00000010831) #19	Tex12 (ENSPEMG00000026300) #20	Bco2 (ENSPEMG00000015323) #21	Pts (ENSPEMG00000025903) #22	Plet1 (ENSPEMG00000016736)	Ncam1 (ENSPEMG00000005268) #24	Ttc12 (ENSPEMG00000011009)	Ankk1 (ENSPEMG00000011950) #26	Drd2 (ENSPEMG00000012651) #27	Tmprss5 (ENSPEMG00000020635) #28	Zw10 (ENSPEMG00000020641) #29	ENSPEMG00000025300	Usp28 (ENSPEMG00000007642)	Htr3b (ENSPEMG00000011245)	Htr3a (ENSPEMG00000011767)	Zbtb16 (ENSPEMG00000008489)	Nnmt (ENSPEMG00000010869)	Gm5617 (ENSPEMG00000027308)	ENSPEMG00000027574
Upper Galilee mountains blind mole rat	MODERN SPECIES	805	Alg9 (ENSNGAG00000003123) #8	Fdxacb1 (ENSNGAG00000014606) #9	Cfap68 (ENSNGAG00000002390) #10	Cryab (ENSNGAG00000018205) #11	Hspb2 (ENSNGAG00000017841) #12	2310030G06Rik (ENSNGAG00000016506) #13	Dixdc1 (ENSNGAG00000021755) #14	Dlat (ENSNGAG00000018150) #15	Pih1d2 (ENSNGAG00000015239) #16	Nkapd1 (ENSNGAG00000014270)	Timm8b (ENSNGAG00000012509)	Sdhd (ENSNGAG00000011586) #18	Il18 (ENSNGAG00000015599) #19	Tex12 (ENSNGAG00000005833) #20	Bco2 (ENSNGAG00000002798) #21	Pts (ENSNGAG00000006350) #22	Ncam1 (ENSNGAG00000018534) #24	Ttc12 (ENSNGAG00000022155)	Ankk1 (ENSNGAG00000010196) #26	Drd2 (ENSNGAG00000019891) #27	Tmprss5 (ENSNGAG00000007781) #28	Zw10 (ENSNGAG00000011177) #29	Usp28 (ENSNGAG00000021988)	Htr3b (ENSNGAG00000020505)	Htr3a (ENSNGAG00000009634)	Zbtb16 (ENSNGAG00000016604)
Lesser Egyptian jerboa	MODERN SPECIES	132	Ppp2r1b (ENSJJAG00000019516)	Alg9 (ENSJJAG00000011853) #8	Fdxacb1 (ENSJJAG00000010367) #9	Cryab (ENSJJAG00000022997) #11	Hspb2 (ENSJJAG00000021472) #12	ENSJJAG00000021041 #13	Dixdc1 (ENSJJAG00000008695) #14	ENSJJAG00000009823 #15	Pih1d2 (ENSJJAG00000017973) #16	Nkapd1 (ENSJJAG00000017529)	Timm8b (ENSJJAG00000017133)	Sdhd (ENSJJAG00000016993) #18	ENSJJAG00000009771 #19	ENSJJAG00000007943 #20	Bco2 (ENSJJAG00000001097) #21	Pts (ENSJJAG00000020433) #22	ENSJJAG00000015396	ENSJJAG00000013932 #23	Ncam1 (ENSJJAG00000020370) #24	ENSJJAG00000016572	Drd2 (ENSJJAG00000011634) #27	ENSJJAG00000011151	Tmprss5 (ENSJJAG00000019055) #28	Zw10 (ENSJJAG00000014864) #29	Usp28 (ENSJJAG00000018326)	Htr3b (ENSJJAG00000008134)	Htr3a (ENSJJAG00000021347)	Zbtb16 (ENSJJAG00000019821)	Nnmt (ENSJJAG00000017355)	ENSJJAG00000016540	ENSJJAG00000013710
Kangaroo rat	MODERN SPECIES	329	Ppp2r1b (ENSDORG00000009030)	Alg9 (ENSDORG00000004027) #8	Fdxacb1 (ENSDORG00000028060) #9	Cfap68 (ENSDORG00000000811) #10	Cryab (ENSDORG00000026280) #11	Hspb2 (ENSDORG00000000818) #12	Dixdc1 (ENSDORG00000001924) #14	Dlat (ENSDORG00000001926) #15	Pih1d2 (ENSDORG00000001927) #16	Nkapd1 (ENSDORG00000001928)	Timm8b (ENSDORG00000028850)	Sdhd (ENSDORG00000025273) #18	Il18 (ENSDORG00000012661) #19	Tex12 (ENSDORG00000006689) #20	Bco2 (ENSDORG00000006692) #21	Pts (ENSDORG00000013720) #22	Ncam1 (ENSDORG00000015038) #24	Ttc12 (ENSDORG00000013510)	Ankk1 (ENSDORG00000013515) #26	Drd2 (ENSDORG00000013516) #27	Tmprss5 (ENSDORG00000011412) #28	Zw10 (ENSDORG00000011414) #29	Usp28 (ENSDORG00000011419)	Htr3b (ENSDORG00000014039)	Htr3a (ENSDORG00000014030)	Zbtb16 (ENSDORG00000011901)	Nnmt (ENSDORG00000001312)	Rbm7 (ENSDORG00000029149)	Rexo2 (ENSDORG00000011255)	Nxpe4 (ENSDORG00000002930)	Nxpe2 (ENSDORG00000011862)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Marmotini	ANCESTRAL SPECIES	20	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.`b.b #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d.m.a	ENSGT00390000009255
Marmotini_b	ANCESTRAL SPECIES	113	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003.`b.b #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d.m.a	ENSGT00390000009255
Arctic ground squirrel	MODERN SPECIES	104	PPP2R1B (ENSUPAG00010020207)	ALG9 (ENSUPAG00010020282) #8	FDXACB1 (ENSUPAG00010020290) #9	CFAP68 (ENSUPAG00010020296) #10	CRYAB (ENSUPAG00010020330) #11	ENSUPAG00010020339 #13	DIXDC1 (ENSUPAG00010020351) #14	DLAT (ENSUPAG00010020427) #15	PIH1D2 (ENSUPAG00010020767) #16	ENSUPAG00010020777	TIMM8B (ENSUPAG00010020778)	ENSUPAG00010020783 #18	IL18 (ENSUPAG00010020791) #19	TEX12 (ENSUPAG00010020792) #20	BCO2 (ENSUPAG00010020797) #21	PTS (ENSUPAG00010020809) #22	ENSUPAG00010020811	NCAM1 (ENSUPAG00010020818) #24	TTC12 (ENSUPAG00010020896)	DRD2 (ENSUPAG00010020916) #27	TMPRSS5 (ENSUPAG00010020923) #28	ZW10 (ENSUPAG00010020979) #29	ENSUPAG00010020992	CLDN25 (ENSUPAG00010020995)	USP28 (ENSUPAG00010021015)	HTR3B (ENSUPAG00010021131)	HTR3A (ENSUPAG00010021143)	ZBTB16 (ENSUPAG00010021150)	NNMT (ENSUPAG00010021165)	C11orf71 (ENSUPAG00010021172)	RBM7 (ENSUPAG00010021174)
Squirrel	MODERN SPECIES	212	SIK2 (ENSSTOG00000007693) #7	PPP2R1B (ENSSTOG00000026180)	ALG9 (ENSSTOG00000028019) #8	CFAP68 (ENSSTOG00000031439) #10	CRYAB (ENSSTOG00000010109) #11	HSPB2 (ENSSTOG00000023561) #12	DIXDC1 (ENSSTOG00000011111) #14	DLAT (ENSSTOG00000011131) #15	PIH1D2 (ENSSTOG00000011136) #16	NKAPD1 (ENSSTOG00000002053)	TIMM8B (ENSSTOG00000023435)	ENSSTOG00000029417 #18	IL18 (ENSSTOG00000022148) #19	ENSSTOG00000030955 #20	BCO2 (ENSSTOG00000011700) #21	PTS (ENSSTOG00000013277) #22	NCAM1 (ENSSTOG00000003495) #24	TTC12 (ENSSTOG00000003513)	DRD2 (ENSSTOG00000003570) #27	TMPRSS5 (ENSSTOG00000008775) #28	ZW10 (ENSSTOG00000008796) #29	CLDN25 (ENSSTOG00000021123)	USP28 (ENSSTOG00000008820)	HTR3B (ENSSTOG00000002635)	ENSSTOG00000002620	ZBTB16 (ENSSTOG00000003580)	NNMT (ENSSTOG00000003587)	C11orf71 (ENSSTOG00000034331)	ENSSTOG00000012459	REXO2 (ENSSTOG00000012465)	ENSSTOG00000024785
Alpin marmot	MODERN SPECIES	25	ALG9 (ENSMMMG00000023503) #8	FDXACB1 (ENSMMMG00000023500) #9	CFAP68 (ENSMMMG00000023496) #10	CRYAB (ENSMMMG00000023494) #11	HSPB2 (ENSMMMG00000023491) #12	C11orf52 (ENSMMMG00000023489) #13	DIXDC1 (ENSMMMG00000023456) #14	DLAT (ENSMMMG00000023453) #15	PIH1D2 (ENSMMMG00000023449) #16	NKAPD1 (ENSMMMG00000023445)	TIMM8B (ENSMMMG00000023443)	ENSMMMG00000023442 #18	IL18 (ENSMMMG00000023440) #19	TEX12 (ENSMMMG00000023438) #20	BCO2 (ENSMMMG00000023436) #21	PTS (ENSMMMG00000023433) #22	ENSMMMG00000023431	ENSMMMG00000023430	NCAM1 (ENSMMMG00000023398) #24	TTC12 (ENSMMMG00000023390)	ENSMMMG00000023386	DRD2 (ENSMMMG00000023385) #27	TMPRSS5 (ENSMMMG00000023341) #28	ZW10 (ENSMMMG00000023333) #29	CLDN25 (ENSMMMG00000023330)	USP28 (ENSMMMG00000023313)	HTR3B (ENSMMMG00000023307)	HTR3A (ENSMMMG00000023299)	ZBTB16 (ENSMMMG00000023298)	NNMT (ENSMMMG00000023293)	C11orf71 (ENSMMMG00000023278)
Eurasian red squirrel	MODERN SPECIES	2	ALG9 (ENSSVLG00005015676) #8	FDXACB1 (ENSSVLG00005015748) #9	CFAP68 (ENSSVLG00005015806) #10	CRYAB (ENSSVLG00005015904) #11	HSPB2 (ENSSVLG00005015952) #12	C11orf52 (ENSSVLG00005015991) #13	DIXDC1 (ENSSVLG00005016052) #14	ENSSVLG00005016285 #15	PIH1D2 (ENSSVLG00005016326) #16	ENSSVLG00005016373	TIMM8B (ENSSVLG00005016496)	SDHD (ENSSVLG00005016538) #18	IL18 (ENSSVLG00005016635) #19	TEX12 (ENSSVLG00005016707) #20	BCO2 (ENSSVLG00005016778) #21	PTS (ENSSVLG00005017427) #22	NCAM1 (ENSSVLG00005017605) #24	TTC12 (ENSSVLG00005018494)	DRD2 (ENSSVLG00005018544) #27	TMPRSS5 (ENSSVLG00005018744) #28	ZW10 (ENSSVLG00005019311) #29	CLDN25 (ENSSVLG00005019372)	USP28 (ENSSVLG00005019534)	HTR3B (ENSSVLG00005019693)	HTR3A (ENSSVLG00005019864)	ZBTB16 (ENSSVLG00005020211)	NNMT (ENSSVLG00005020280)	ENSSVLG00005020322	C11orf71 (ENSSVLG00005020339)	RBM7 (ENSSVLG00005020354)	REXO2 (ENSSVLG00005020422)
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000021361	ENSHGLG00000018561	ENSHGLG00000021287	ENSHGLG00000045487	ENSHGLG00000033993	ENSHGLG00000044148	ENSHGLG00000037836	ENSHGLG00000021173	ENSHGLG00000020364	ENSHGLG00000020541	OR52E5 (ENSHGLG00000010640)	ENSHGLG00000038234	ENSHGLG00000036553	ENSHGLG00000021059	ENSHGLG00000021233	ENSHGLG00000021197 #22	ENSHGLG00000021343	ENSHGLG00000021230	OR56B4 (ENSHGLG00000021275)	OR52B2 (ENSHGLG00000021062)	OR52W1 (ENSHGLG00000015412)	C11orf42 (ENSHGLG00000015442)	FHIP1B (ENSHGLG00000019367)	CNGA4 (ENSHGLG00000012330)	CCKBR (ENSHGLG00000004767)	CAVIN3 (ENSHGLG00000005382)	SMPD1 (ENSHGLG00000009996)	APBB1 (ENSHGLG00000010438)	HPX (ENSHGLG00000003482)	TRIM3 (ENSHGLG00000004231)	ARFIP2 (ENSHGLG00000007482)
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Guinea pig	MODERN SPECIES	19	PPP2R1B (ENSCPOG00000013407)	ALG9 (ENSCPOG00000013412) #8	FDXACB1 (ENSCPOG00000032584) #9	CFAP68 (ENSCPOG00000030692) #10	CRYAB (ENSCPOG00000038560) #11	HSPB2 (ENSCPOG00000034179) #12	DIXDC1 (ENSCPOG00000008568) #14	DLAT (ENSCPOG00000011723) #15	PIH1D2 (ENSCPOG00000027299) #16	NKAPD1 (ENSCPOG00000033651)	TIMM8B (ENSCPOG00000032635)	SDHD (ENSCPOG00000003178) #18	IL18 (ENSCPOG00000003179) #19	TEX12 (ENSCPOG00000009900) #20	BCO2 (ENSCPOG00000009905) #21	PTS (ENSCPOG00000034020) #22	NCAM1 (ENSCPOG00000004681) #24	TTC12 (ENSCPOG00000004685)	ANKK1 (ENSCPOG00000001170) #26	DRD2 (ENSCPOG00000009265) #27	ENSCPOG00000009863 #28	ZW10 (ENSCPOG00000005097) #29	USP28 (ENSCPOG00000001875)	HTR3B (ENSCPOG00000010829)	HTR3A (ENSCPOG00000010833)	ZBTB16 (ENSCPOG00000004151)	NNMT (ENSCPOG00000013034)	RBM7 (ENSCPOG00000034273)	REXO2 (ENSCPOG00000010548)	NXPE4 (ENSCPOG00000000299)	NXPE2 (ENSCPOG00000011786)
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255
Degu	MODERN SPECIES	307					ENSODEG00000000209	CRYAB (ENSODEG00000000243) #11	HSPB2 (ENSODEG00000000284) #12	DIXDC1 (ENSODEG00000000375) #14	ENSODEG00000000505 #15	ENSODEG00000000806	ENSODEG00000000817	ENSODEG00000000833 #18	IL18 (ENSODEG00000000875) #19	TEX12 (ENSODEG00000000891) #20	BCO2 (ENSODEG00000000956) #21	PTS (ENSODEG00000000157) #22	NCAM1 (ENSODEG00000000397) #24	ENSODEG00000000622	DRD2 (ENSODEG00000000703) #27	TMPRSS5 (ENSODEG00000000500) #28	AKAP10 (ENSODEG00000000586)	ULK2 (ENSODEG00000000757)
Long-tailed chinchilla	MODERN SPECIES	119	ALG9 (ENSCLAG00000012949) #8	FDXACB1 (ENSCLAG00000015613) #9	CFAP68 (ENSCLAG00000012754) #10	CRYAB (ENSCLAG00000013159) #11	HSPB2 (ENSCLAG00000016288) #12	C11orf52 (ENSCLAG00000016503) #13	DIXDC1 (ENSCLAG00000014623) #14	DLAT (ENSCLAG00000012017) #15	PIH1D2 (ENSCLAG00000015278) #16	NKAPD1 (ENSCLAG00000012317)	TIMM8B (ENSCLAG00000012638)	SDHD (ENSCLAG00000013294) #18	IL18 (ENSCLAG00000012063) #19	TEX12 (ENSCLAG00000014098) #20	BCO2 (ENSCLAG00000015493) #21	PTS (ENSCLAG00000014281) #22	ENSCLAG00000013183	NCAM1 (ENSCLAG00000013591) #24	TTC12 (ENSCLAG00000011783)	ANKK1 (ENSCLAG00000011795) #26	DRD2 (ENSCLAG00000016034) #27	TMPRSS5 (ENSCLAG00000016268) #28	ZW10 (ENSCLAG00000011976) #29	USP28 (ENSCLAG00000013072)	HTR3B (ENSCLAG00000016164)	HTR3A (ENSCLAG00000016559)	ZBTB16 (ENSCLAG00000014819)	NNMT (ENSCLAG00000014574)	C11orf71 (ENSCLAG00000014517)	RBM7 (ENSCLAG00000014875)	ENSCLAG00000017767
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000002752.x #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	4616																ENSEEUG00000013157 #22
Hedgehog	MODERN SPECIES	9377																ENSEEUG00000000465 #22
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00920000150760	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b #22	ENSGT01020000231542	ENSGT00390000002752.w.a #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00390000002752.x #22
Pecora	ANCESTRAL SPECIES																	ENSGT00390000002752.x #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000002752.x #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000002752.x #22
Bovinae	ANCESTRAL SPECIES	21	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.w.b.a #22	ENSGT01020000231542	ENSGT00390000002752.w.a.d #22	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00900000143181 #23	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28	ENSGT00390000016427 #29	ENSGT00940000163940	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962	ENSGT00870000136493.d
Bos	ANCESTRAL SPECIES																	ENSGT00390000002752.x #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00390000002752.x #22
Cow	MODERN SPECIES	6	CFAP68 (ENSBTAG00000004951) #10	CRYAB (ENSBTAG00000000434) #11	HSPB2 (ENSBTAG00000000440) #12	C15H11orf52 (ENSBTAG00000008661) #13	DIXDC1 (ENSBTAG00000008665) #14	DLAT (ENSBTAG00000010709) #15	PIH1D2 (ENSBTAG00000005156) #16	NKAPD1 (ENSBTAG00000001999)	TIMM8B (ENSBTAG00000002000)	SDHD (ENSBTAG00000016266) #18	ENSBTAG00000049455	IL18 (ENSBTAG00000000277) #19	TEX12 (ENSBTAG00000016548) #20	BCO2 (ENSBTAG00000034193) #21	ENSBTAG00000054599	PTS (ENSBTAG00000049973) #22	C15H11orf34 (ENSBTAG00000015810)	NCAM1 (ENSBTAG00000005710) #24	TTC12 (ENSBTAG00000010008)	DRD2 (ENSBTAG00000010860) #27	ENSBTAG00000051043 #28	ZW10 (ENSBTAG00000020066) #29	CLDN25 (ENSBTAG00000039149)	USP28 (ENSBTAG00000002323)	HTR3B (ENSBTAG00000031330)	HTR3A (ENSBTAG00000010791)	ZBTB16 (ENSBTAG00000011266)	ENSBTAG00000008564	C15H11orf71 (ENSBTAG00000008220)	RBM7 (ENSBTAG00000008219)	REXO2 (ENSBTAG00000005843)
Camelidae	ANCESTRAL SPECIES	88	ENSGT00950000183090.D #8	ENSGT00940000160701 #9	ENSGT00390000002905 #10	ENSGT00940000157434 #11	ENSGT00940000161288 #12	ENSGT00390000015195 #13	ENSGT00950000182903.b.b #14	ENSGT00940000154943 #15	ENSGT00510000048581 #16	ENSGT00510000048628	ENSGT00940000155479	ENSGT00390000010003 #18	ENSGT00390000001053 #19	ENSGT00390000006602 #20	ENSGT00950000182913.A.a #21	ENSGT00390000002752.x #22	ENSGT00390000014690	ENSGT00940000155743 #24	ENSGT00940000161758	ENSGT00940000162060 #26	ENSGT00940000155539.a.a #27	ENSGT00940000159163 #28
Arabian camel	MODERN SPECIES	26	HSPB2 (ENSCDRG00005022313) #12	C11orf52 (ENSCDRG00005022314) #13	DIXDC1 (ENSCDRG00005022316) #14	ENSCDRG00005022319 #20	ENSCDRG00005022320	DLAT (ENSCDRG00005022323) #15	PIH1D2 (ENSCDRG00005022324) #16	NKAPD1 (ENSCDRG00005022326)	TIMM8B (ENSCDRG00005022329)	SDHD (ENSCDRG00005022332) #18	IL18 (ENSCDRG00005022350) #19	ENSCDRG00005022360 #20	ENSCDRG00005022373	ENSCDRG00005009007 #20	BCO2 (ENSCDRG00005009108) #21	PTS (ENSCDRG00005009613) #22	NCAM1 (ENSCDRG00005009841) #24	TTC12 (ENSCDRG00005012084)	ANKK1 (ENSCDRG00005012156) #26	DRD2 (ENSCDRG00005012244) #27	TMPRSS5 (ENSCDRG00005012392) #28	ZW10 (ENSCDRG00005012776) #29	ENSCDRG00005014029	CLDN25 (ENSCDRG00005014060)	USP28 (ENSCDRG00005014122)	HTR3B (ENSCDRG00005014854)	ENSCDRG00005014927	ENSCDRG00005014949	ZBTB16 (ENSCDRG00005014980)	ENSCDRG00005015068	ENSCDRG00005015092
Alpaca	MODERN SPECIES	660	HOATZ (ENSVPAG00000000030)	ENSVPAG00000000033	SIK2 (ENSVPAG00000000035) #7	PPP2R1B (ENSVPAG00000000039)	ALG9 (ENSVPAG00000000042) #8	FDXACB1 (ENSVPAG00000000044) #9	CFAP68 (ENSVPAG00000000047) #10	DIXDC1 (ENSVPAG00000000050) #14	DLAT (ENSVPAG00000000053) #15	PIH1D2 (ENSVPAG00000000054) #16	NKAPD1 (ENSVPAG00000000055)	TIMM8B (ENSVPAG00000000056)	IL18 (ENSVPAG00000000057) #19	TEX12 (ENSVPAG00000000058) #20	BCO2 (ENSVPAG00000000060) #21	PTS (ENSVPAG00000000061) #22	ENSVPAG00000000062
Anura	ANCESTRAL SPECIES	559															ENSGT00940000155040.a	ENSGT00390000002752 #22
Leishan spiny toad	MODERN SPECIES	1	ENSLLEG00000023341	ENSLLEG00000023580	IGHMBP2 (ENSLLEG00000023653)	SYT12 (ENSLLEG00000023939)	PTDSS2 (ENSLLEG00000024015)	KCNQ1 (ENSLLEG00000024234)	ENSLLEG00000024419	ENSLLEG00000008389	LUZP2 (ENSLLEG00000008465)	ANO3 (ENSLLEG00000008893)	ENSLLEG00000009693	ENSLLEG00000009760	ENSLLEG00000009932	ENSLLEG00000009967	LRRC10B (ENSLLEG00000009985)	PTS (ENSLLEG00000010010) #22	ENSLLEG00000010062	SIRT3 (ENSLLEG00000010141)	PSMD13 (ENSLLEG00000010333)	ENSLLEG00000010582	ENSLLEG00000010656	ENSLLEG00000010680	IFITM5 (ENSLLEG00000010742)	SPON1 (ENSLLEG00000010834)	ENSLLEG00000011632	SYT9 (ENSLLEG00000011656)	OLFML1 (ENSLLEG00000011753)	PPFIBP2 (ENSLLEG00000011845)	CYB5R2 (ENSLLEG00000012735)	ENSLLEG00000012800	FAR1 (ENSLLEG00000012948)
Frog	MODERN SPECIES	4	ENSXETG00000035320	ENSXETG00000046924	ifitm5 (ENSXETG00000048235)	ifitm3 (ENSXETG00000006711)	ifitm1 (ENSXETG00000030477)	ENSXETG00000036115	b4galnt4 (ENSXETG00000006707)	pkp3 (ENSXETG00000006706)	sigirr (ENSXETG00000006704)	fen1 (ENSXETG00000006703)	tmem258 (ENSXETG00000027540)	myrf (ENSXETG00000006702)	dagla (ENSXETG00000006696)	syt7 (ENSXETG00000008832)	ENSXETG00000008831	pts (ENSXETG00000034891) #22	psmd13 (ENSXETG00000008827)	SIRT3 (ENSXETG00000032567)	bet1l (ENSXETG00000008825)	tkfc (ENSXETG00000008822)	ddb1 (ENSXETG00000008820)	ENSXETG00000044748	ENSXETG00000030866	ENSXETG00000008818	fut5 (ENSXETG00000033979)	vwce (ENSXETG00000031778)	ppp6r3 (ENSXETG00000002985)	ENSXETG00000048205	ENSXETG00000048841	ENSXETG00000048623	ENSXETG00000039825
Coelacanth	MODERN SPECIES	2313															ENSLACG00000003010	PTS (ENSLACG00000022617) #22
Actinopterygii	ANCESTRAL SPECIES	54	ENSGT00950000183213.a.b	ENSGT00940000163867	ENSGT00940000164726	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958	ENSGT00940000155556.c	ENSGT00940000157100	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b	ENSGT01080000257338.A.b	ENSGT00940000158127	ENSGT00940000159441	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b	ENSGT00940000155537	ENSGT00940000157972	ENSGT00940000156268.a.a	ENSGT00940000163461.a.a.a.a	ENSGT00940000163461.a.a.a.b	ENSGT00940000161336	ENSGT00390000004323.b	ENSGT00390000014667	ENSGT00940000168279	ENSGT00940000154744	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00730000111191
Reedfish	MODERN SPECIES	5	ENSECRG00000022646	radil2a (ENSECRG00000022684)	sult2st2 (ENSECRG00000022698)	ENSECRG00000022730	bsk146 (ENSECRG00000022770)	ENSECRG00000022774	ENSECRG00000014743	ENSECRG00000014871	ENSECRG00000014907	dhrs7ca (ENSECRG00000015003)	hs3st3l (ENSECRG00000015032)	GSG1L2 (ENSECRG00000015105)	ENSECRG00000015339	ENSECRG00000015361	RCVRN (ENSECRG00000015398)	PTS (ENSECRG00000015429) #22	ENSECRG00000015496	GAS7 (ENSECRG00000015554)	ENSECRG00000016024	ENSECRG00000018507	MYH2 (ENSECRG00000022856)	MYH2 (ENSECRG00000022945)	sco1 (ENSECRG00000022965)	adprm (ENSECRG00000022968)	tmem220 (ENSECRG00000022969)	map2k4b (ENSECRG00000022972)	MYOCD (ENSECRG00000022975)	elac2 (ENSECRG00000022981)	DNAH17 (ENSECRG00000022994)	SHISA6 (ENSECRG00000022995)	PIRT (ENSECRG00000022996)
Neopterygii	ANCESTRAL SPECIES	6	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.b	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000165400	ENSGT00940000158690	ENSGT01050000244891.B	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b	ENSGT00940000155537	ENSGT00940000157972	ENSGT00940000162543	ENSGT00390000004323.b	ENSGT00940000168279	ENSGT00390000014667	ENSGT00940000154744	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00730000111191	ENSGT00940000154076.C.d	ENSGT00940000159717	ENSGT00940000156854
Spotted gar	MODERN SPECIES	648	UNC13D (ENSLOCG00000011594)	wbp2 (ENSLOCG00000011614)	ENSLOCG00000011623	mrpl38 (ENSLOCG00000011636)	ENSLOCG00000011651	FDXR (ENSLOCG00000011730)	ENSLOCG00000011740	narf (ENSLOCG00000011760)	cybc1 (ENSLOCG00000011775)	hexdc (ENSLOCG00000011783)	ogfod3 (ENSLOCG00000011795)	ENSLOCG00000017749	UTS2R (ENSLOCG00000011810)	GSG1L2 (ENSLOCG00000011813)	ENSLOCG00000011822	PTS (ENSLOCG00000011839) #22	ENSLOCG00000011847	gas7a (ENSLOCG00000011859)	ENSLOCG00000011877	ENSLOCG00000011910	MYH2 (ENSLOCG00000011936)	myhz1.2 (ENSLOCG00000012091)	sco1 (ENSLOCG00000012104)	tmem220 (ENSLOCG00000012113)	adprm (ENSLOCG00000012117)	map2k4b (ENSLOCG00000012127)	MYOCD (ENSLOCG00000012138)	elac2 (ENSLOCG00000012146)	ENSLOCG00000012163	SHISA6 (ENSLOCG00000012185)	ENSLOCG00000012194
Osteoglossocephalai	ANCESTRAL SPECIES	24	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958	ENSGT00940000155556.c	ENSGT00940000157100.b	ENSGT01050000244814.a.b.b	ENSGT00940000166074.A	ENSGT01090000260189	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b	ENSGT00940000155537	ENSGT00940000157972	ENSGT00940000156268.a.b	ENSGT00390000014667	ENSGT00940000154744	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.A	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000177272
Osteoglossiformes	ANCESTRAL SPECIES	7	ENSGT00940000160624	ENSGT00390000007792	ENSGT00950000183213.a.b.b	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958	ENSGT01090000260189	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000160705.C.b.d	ENSGT00940000156268.a.b	ENSGT00390000014667	ENSGT00940000154744	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000177272	ENSGT00940000155709.l	ENSGT00940000157510	ENSGT00940000161207	ENSGT00390000007512	ENSGT00390000002226
P. kingsleyae	MODERN SPECIES	319														ENSPKIG00000002745	rcvrnb (ENSPKIG00000002765)	PTS (ENSPKIG00000002785) #22	ENSPKIG00000002845	ENSPKIG00000002957	adprm (ENSPKIG00000002994)	map2k4b (ENSPKIG00000003071)	MYOCD (ENSPKIG00000003265)	DNAH17 (ENSPKIG00000003505)	SHISA6 (ENSPKIG00000003955)	ENSPKIG00000003984
Asian bonytongue	MODERN SPECIES	12	WFIKKN2 (ENSSFOG00015022560)	ANKRD40 (ENSSFOG00015022567)	luc7l3 (ENSSFOG00015022582)	ENSSFOG00015022615	ENSSFOG00015022749	ENSSFOG00015022829	bsk146 (ENSSFOG00015027114)	ENSSFOG00015022887	ENSSFOG00015022930	dhrs7cb (ENSSFOG00015023008)	hs3st3l (ENSSFOG00015019337)	ENSSFOG00015023022	ENSSFOG00015028289	ENSSFOG00015023032	rcvrnb (ENSSFOG00015025050)	PTS (ENSSFOG00015023046) #22	ENSSFOG00015023059	ENSSFOG00015029039	adprm (ENSSFOG00015023088)	MAP2K4 (ENSSFOG00015023100)	MAP2K4 (ENSSFOG00015027172)	dnah9 (ENSSFOG00015026669)	ENSSFOG00015024728	adprm (ENSSFOG00015030946)	MYOCD (ENSSFOG00015023113)	DNAH17 (ENSSFOG00015023122)	SHISA6 (ENSSFOG00015025102)	ENSSFOG00015030023	ENSSFOG00015023154	foxk2a (ENSSFOG00015023157)	wdr45b (ENSSFOG00015023163)
Clupeocephala	ANCESTRAL SPECIES	12	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000159717	ENSGT00940000156854.s	ENSGT00940000176040	ENSGT00940000164189	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000167542	ENSGT00950000182849.B.c.b.b
Otomorpha	ANCESTRAL SPECIES	184	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000167542
Otophysi	ANCESTRAL SPECIES		ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.b	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000167542	ENSGT00690000103981	ENSGT00940000154322.B	ENSGT00940000166161	ENSGT00730000111029.a
Characiphysae	ANCESTRAL SPECIES	1	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.b	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000163461.a.a.a.b.d	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000167542	ENSGT00690000103981	ENSGT00630000089884.B	ENSGT00940000154322.B	ENSGT00940000166161	ENSGT00730000111029.a
Characiphysae_b	ANCESTRAL SPECIES	1	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00950000182960.a.a.b.d.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT01030000234534.C	ENSGT00940000158690	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000159507	ENSGT00950000182958.b.a.b	ENSGT00940000157747.y	ENSGT00940000158573	ENSGT00940000157636.c	ENSGT00550000074913.i	ENSGT00940000156614.b.j	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00940000162164
Characoidei	ANCESTRAL SPECIES	50	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.b	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000163461.a.a.a.b.d	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000167542	ENSGT00690000103981	ENSGT00630000089884.B	ENSGT00940000154322.B	ENSGT00940000166161	ENSGT00730000111029.a
Mexicana tetra	MODERN SPECIES	138	SPAG9 (ENSAMXG00000016270)	tob1b (ENSAMXG00000024849)	ENSAMXG00000016260	ENSAMXG00000016253	ENSAMXG00000016247	sult2st2 (ENSAMXG00000016243)	ENSAMXG00000016232	bsk146 (ENSAMXG00000039545)	ENSAMXG00000034267	ENSAMXG00000016185	dhrs7cb (ENSAMXG00000016169)	hs3st3l (ENSAMXG00000025015)	ENSAMXG00000042457	ENSAMXG00000016128	rcvrnb (ENSAMXG00000032905)	PTS (ENSAMXG00000042819) #22	ENSAMXG00000016081	ENSAMXG00000016070
Red-bellied piranha	MODERN SPECIES	26								bsk146 (ENSPNAG00000004090)	ENSPNAG00000006709	ENSPNAG00000026678	dhrs7cb (ENSPNAG00000026628)	hs3st3l (ENSPNAG00000026620)	ENSPNAG00000026604	ENSPNAG00000026590	rcvrnb (ENSPNAG00000026581)	PTS (ENSPNAG00000026559) #22	ENSPNAG00000026505	ENSPNAG00000005568	adprm (ENSPNAG00000026442)	map2k4b (ENSPNAG00000026421)	ENSPNAG00000026290	MYOCD (ENSPNAG00000026256)	DNAH17 (ENSPNAG00000026200)	ENSPNAG00000005501	SHISA6 (ENSPNAG00000003981)	ENSPNAG00000025787	foxk2a (ENSPNAG00000025770)	wdr45b (ENSPNAG00000025756)	mrpl58 (ENSPNAG00000025708)	si:ch1073-357b18.4 (ENSPNAG00000006196)	RNF213 (ENSPNAG00000025682)
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	36	DAGLB (ENSEEEG00000004532)	SPAG9 (ENSEEEG00000004540)	tob1b (ENSEEEG00000004578)	WFIKKN1 (ENSEEEG00000004580)	ENSEEEG00000004678	ENSEEEG00000007258	sult2st2 (ENSEEEG00000007261)	ENSEEEG00000007265	bsk146 (ENSEEEG00000007271)	ENSEEEG00000007272	ENSEEEG00000007276	dhrs7cb (ENSEEEG00000007288)	hs3st3l (ENSEEEG00000007291)	ENSEEEG00000007293	ENSEEEG00000007296	PTS (ENSEEEG00000007297) #22	PTS (ENSEEEG00000007300) #22	ENSEEEG00000007322	adprm (ENSEEEG00000007328)	map2k4b (ENSEEEG00000007342)	dnah9 (ENSEEEG00000007520)	ENSEEEG00000007524	ENSEEEG00000007525	ENSEEEG00000007530	ENSEEEG00000007531	ENSEEEG00000007532	ENSEEEG00000007535	ENSEEEG00000007537	foxk2a (ENSEEEG00000007540)	wdr45b (ENSEEEG00000007545)	mrpl58 (ENSEEEG00000007562)
Electric eel	MODERN SPECIES	36	SPAG9 (ENSEEEG00000004540)	tob1b (ENSEEEG00000004578)	WFIKKN1 (ENSEEEG00000004580)	ENSEEEG00000004678	ENSEEEG00000007258	sult2st2 (ENSEEEG00000007261)	ENSEEEG00000007265	bsk146 (ENSEEEG00000007271)	ENSEEEG00000007272	ENSEEEG00000007276	dhrs7cb (ENSEEEG00000007288)	hs3st3l (ENSEEEG00000007291)	ENSEEEG00000007293	ENSEEEG00000007296	PTS (ENSEEEG00000007297) #22	PTS (ENSEEEG00000007300) #22	ENSEEEG00000007322	adprm (ENSEEEG00000007328)	map2k4b (ENSEEEG00000007342)	dnah9 (ENSEEEG00000007520)	ENSEEEG00000007524	ENSEEEG00000007525	ENSEEEG00000007530	ENSEEEG00000007531	ENSEEEG00000007532	ENSEEEG00000007535	ENSEEEG00000007537	foxk2a (ENSEEEG00000007540)	wdr45b (ENSEEEG00000007545)	mrpl58 (ENSEEEG00000007562)
Cyprinoidei	ANCESTRAL SPECIES	29	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.a.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000164626.b.a.a.a	ENSGT00940000166074.B	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i.a	ENSGT00940000157510	ENSGT00940000167542	ENSGT00690000103981	ENSGT00940000154322.B
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	5	ENSGT00940000154208.c.b.h	ENSGT00940000158031.c.a	ENSGT00940000163867.k	ENSGT00940000164726.b	ENSGT00940000164900.ab	ENSGT00940000164900.`b.a	ENSGT00940000169412	ENSGT00940000165096.b.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.a.a.a	ENSGT00940000157100.a.c	ENSGT00940000154768.A.b.a	ENSGT01050000244814.a.b.a.j	ENSGT00940000158127.d.a	ENSGT00940000166074.B	ENSGT00390000002752.c #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b.f.a	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.h.a	ENSGT00940000154076.C.d	ENSGT00940000156854.s.c	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i.a.b	ENSGT00940000157510.f	ENSGT00940000167542	ENSGT00940000154322.B	ENSGT00940000166161	ENSGT00940000154838.B.i.a.b	ENSGT00940000163852.c.a.b.a.b.c.b
Cyprininae_a	ANCESTRAL SPECIES	14	ENSGT00940000153496.a.b.a.a	ENSGT00940000154208.c.b.h	ENSGT00940000158031.c.a	ENSGT00940000163867.k	ENSGT00940000164726.b	ENSGT00940000164900.ab	ENSGT00940000164900.`b.a	ENSGT00940000169412	ENSGT00940000156922.b.a	ENSGT00940000164958.a.a.a.a	ENSGT00940000157100.a.c.a	ENSGT00940000154768.A.b.a	ENSGT01050000244814.a.b.a.j	ENSGT00940000158127.d.a	ENSGT00940000166074.B	ENSGT00390000002752.c #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b.f.a	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.h.a	ENSGT00940000154076.C.d	ENSGT00940000156854.s.c	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i.a.b	ENSGT00940000157510.f	ENSGT00940000167542	ENSGT00940000154322.B	ENSGT00940000166161	ENSGT00940000154838.B.i.a.b	ENSGT00940000163852.c.a.b.a.b.c.b
Golden-line barbel	MODERN SPECIES	568								ENSSGRG00000000905	ENSSGRG00000000902	dhrs7cb (ENSSGRG00000000901)	hs3st3l (ENSSGRG00000000899)	ENSSGRG00000000898	ENSSGRG00000000895	ENSSGRG00000000893	rcvrnb (ENSSGRG00000000890)	PTS (ENSSGRG00000000885) #22	ENSSGRG00000000363	adprm (ENSSGRG00000053055)	map2k4b (ENSSGRG00000052991)	ENSSGRG00000052987	DNAH17 (ENSSGRG00000052983)	SHISA6 (ENSSGRG00000052979)	ENSSGRG00000052978
Goldfish	MODERN SPECIES	3	ENSCARG00000053497	ENSCARG00000042338	ENSCARG00000041920	ENSCARG00000041904	ENSCARG00000041873	ENSCARG00000041487	ENSCARG00000041460	bsk146 (ENSCARG00000041437)	ENSCARG00000041386	ENSCARG00000040938	dhrs7cb (ENSCARG00000040875)	hs3st3l (ENSCARG00000040865)	ENSCARG00000040851	ENSCARG00000040794	rcvrnb (ENSCARG00000040774)	PTS (ENSCARG00000040752) #22	ENSCARG00000040737	ENSCARG00000039362	adprm (ENSCARG00000039281)	map2k4b (ENSCARG00000036752)	MYOCD (ENSCARG00000036606)	DNAH17 (ENSCARG00000033789)	SHISA6 (ENSCARG00000033257)	ENSCARG00000033247	foxk2a (ENSCARG00000033024)	wdr45b (ENSCARG00000032942)	mrpl58 (ENSCARG00000032918)	ENSCARG00000032912	ENSCARG00000032887	ENSCARG00000032870	ENSCARG00000032860
Cyprininae	ANCESTRAL SPECIES	368	ENSGT00940000159920.b.e.a	ENSGT00940000155698.B.a	ENSGT00390000004010.a.b.a.b.a	ENSGT00940000156486.a.b	ENSGT00940000153496.a.b.a.b	ENSGT00940000154208.c.b.g	ENSGT00940000158031.c.b	ENSGT00940000163867.l	ENSGT00940000164900.`b.b	ENSGT00940000165096.b.b.a	ENSGT00940000164958.a.a.a.b	ENSGT00940000157100.a.d	ENSGT00940000154768.A.b.b	ENSGT01050000244814.a.b.a.i	ENSGT00940000158127.d.b	ENSGT00390000002752.d #22	ENSGT00940000156268.a.b.f.b	ENSGT00950000182979.a.b.b.b.a.c.h.b	ENSGT00940000156854.s.d	ENSGT00940000176040	ENSGT00940000155709.j.a	ENSGT00940000156555.i.b.b	ENSGT00940000157428.q	ENSGT00940000154322.A.b.a.c	ENSGT00940000156843.a	ENSGT00390000006009.a.a.a.c.b.h	ENSGT00940000158816.c.b	ENSGT00940000159339.sb.b	ENSGT00940000159924.c.b.c	ENSGT00940000155709.i.a.a	ENSGT00940000157510.e
Goldfish	MODERN SPECIES	53			MED9 (ENSCARG00000069540)	rasd1 (ENSCARG00000069545)	RAB26 (ENSCARG00000069549)	sox8a (ENSCARG00000069554)	ENSCARG00000069562	kdelr2b (ENSCARG00000069584)	DAGLB (ENSCARG00000069593)	tob1b (ENSCARG00000069637)	ENSCARG00000069638	ENSCARG00000069800	ENSCARG00000070192	ENSCARG00000070193	ENSCARG00000070195	PTS (ENSCARG00000070198) #22	ENSCARG00000070204	ENSCARG00000070222	SHISA6 (ENSCARG00000070226)	foxk2a (ENSCARG00000070234)	wdr45b (ENSCARG00000025533)
Cyprininae_a	ANCESTRAL SPECIES	413	ENSGT00940000159920.b.e.a	ENSGT00940000155698.B.a	ENSGT00390000004010.a.b.a.b.a	ENSGT00940000156486.a.b	ENSGT00940000153496.a.b.a.b	ENSGT00940000154208.c.b.g	ENSGT00940000158031.c.b	ENSGT00940000163867.l	ENSGT00940000164900.`b.b	ENSGT00940000165096.b.b.a	ENSGT00940000164958.a.a.a.b	ENSGT00940000157100.a.d	ENSGT00940000154768.A.b.b	ENSGT01050000244814.a.b.a.i	ENSGT00940000158127.d.b	ENSGT00390000002752.d #22	ENSGT00940000156268.a.b.f.b	ENSGT00950000182979.a.b.b.b.a.c.h.b	ENSGT00940000156854.s.d	ENSGT00940000155709.i.a.a	ENSGT00940000157510.e
Common carp reference	MODERN SPECIES	44	ENSCCRG00000059972	polr3e (ENSCCRG00000001009)	kdelr2b (ENSCCRG00000034774)	ENSCCRG00000062207	ENSCCRG00000061900	tob1b (ENSCCRG00000069974)	ENSCCRG00000078832	ENSCCRG00000033439	ENSCCRG00000009943	bsk146 (ENSCCRG00000052918)	ENSCCRG00000058951	dhrs7cb (ENSCCRG00000073701)	hs3st3l (ENSCCRG00000069304)	ENSCCRG00000065615	ENSCCRG00000025195	ENSCCRG00000067851 #22	ENSCCRG00000072382	ENSCCRG00000078605	ENSCCRG00000005691	ENSCCRG00000005627	foxk2a (ENSCCRG00000005620)	wdr45b (ENSCCRG00000005564)	ENSCCRG00000071744	ENSCCRG00000042138	ENSCCRG00000034297	ENSCCRG00000071856	ENSCCRG00000061726
Golden-line barbel	MODERN SPECIES	1458																PTS (ENSSGRG00000041290) #22	ENSSGRG00000041289	SHISA6 (ENSSGRG00000041171)	foxk2a (ENSSGRG00000041053)	wdr45b (ENSSGRG00000040853)
Zebrafish	MODERN SPECIES	3	ENSDARG00000059139	ENSDARG00000096662	ENSDARG00000079791	sult2st2 (ENSDARG00000103785)	ENSDARG00000096522	sult2st1 (ENSDARG00000033170)	ENSDARG00000096669	ENSDARG00000096562	bsk146 (ENSDARG00000099069)	ENSDARG00000090142	ENSDARG00000102081	dhrs7cb (ENSDARG00000071877)	hs3st3l (ENSDARG00000059903)	ENSDARG00000045265	rcvrnb (ENSDARG00000111827)	PTS (ENSDARG00000045269) #22	ENSDARG00000113674	adprm (ENSDARG00000026090)	map2k4b (ENSDARG00000077177)	ENSDARG00000076357	ENSDARG00000116210	dnah9 (ENSDARG00000103383)	ENSDARG00000112433	si:ch1073-357b18.4 (ENSDARG00000096602)	mrpl58 (ENSDARG00000078835)	wdr45b (ENSDARG00000021557)	foxk2a (ENSDARG00000030583)	shisa6 (ENSDARG00000115501)
Clupeiformes	ANCESTRAL SPECIES	119	ENSGT00940000156701	ENSGT00390000010052.a	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00940000155520	ENSGT00940000165557	ENSGT00950000182898.a.b.o	ENSGT00940000157099	ENSGT00390000015109	ENSGT00950000182960.a.a.b	ENSGT00950000183157.a.a.b	ENSGT00510000048032	ENSGT00940000158690	ENSGT00940000166074.B	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00950000183183.b.a	ENSGT00950000183183.b.b	ENSGT00940000155537	ENSGT00940000157972.c	ENSGT00390000017592	ENSGT00940000159507	ENSGT00950000182958.b.a.b	ENSGT00940000157747.y	ENSGT00940000158573	ENSGT00940000157636.c	ENSGT00980000201699.A	ENSGT00550000074913.i	ENSGT00940000156614.b	ENSGT01070000253744.a.a.a.b.a.a
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	57											dhrs7cb (ENSDCDG00000018841)	hs3st3l (ENSDCDG00000018835)	ENSDCDG00000018833	ENSDCDG00000018831	rcvrnb (ENSDCDG00000018829)	PTS (ENSDCDG00000018828) #22	ENSDCDG00000018823	ENSDCDG00000018817	ENSDCDG00000018816
Denticle herring	MODERN SPECIES	18	ENSDCDG00000032158	ENSDCDG00000032157	ENSDCDG00000021061	ENSDCDG00000020796	SHISA6 (ENSDCDG00000020791)	ENSDCDG00000020787	ENSDCDG00000020786	ENSDCDG00000020785	ENSDCDG00000020783	ENSDCDG00000019541	dhrs7cb (ENSDCDG00000019458)	hs3st3l (ENSDCDG00000019455)	ENSDCDG00000019452	ENSDCDG00000018943	rcvrnb (ENSDCDG00000018925)	PTS (ENSDCDG00000018924) #22	ENSDCDG00000018914	ENSDCDG00000017499	adprm (ENSDCDG00000017443)	map2k4b (ENSDCDG00000017363)	ENSDCDG00000017356	ENSDCDG00000017342	ENSDCDG00000017337	ENSDCDG00000017331	rac1a (ENSDCDG00000017323)	crym (ENSDCDG00000017288)	ENSDCDG00000017281	ENSDCDG00000017278	uqcrc2b (ENSDCDG00000017066)	mosmob (ENSDCDG00000017054)	eef2k (ENSDCDG00000017014)
Euteleosteomorpha	ANCESTRAL SPECIES	90	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000176040	ENSGT00940000164189	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000167542	ENSGT00940000158256.g
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT01100000263520.a.a.a.a.b.a.c.a	ENSGT00940000165096.b.a	ENSGT00940000156922.b.b	ENSGT00940000164958.b	ENSGT00940000155556.c	ENSGT00940000157100.b	ENSGT00390000014840.b	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000164626.b.a.a.a.h.b	ENSGT00940000163461.a.a.a.b.c.b.a	ENSGT00940000164626.b.a.a.a.g	ENSGT00940000163461.a.a.a.b.c.b.b.a.b	ENSGT00940000164626.b.a.b.c.a.b	ENSGT00940000163461.a.a.a.b.c.b.b.b.a.a	ENSGT00940000162888.A.b.i.a	ENSGT00940000164626.b.a.b.c.a.a	ENSGT00940000161336	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d
Northern pike	MODERN SPECIES	4	DAGLB (ENSELUG00000020824)	SPAG9 (ENSELUG00000020918)	tob1b (ENSELUG00000020940)	ENSELUG00000000922	ENSELUG00000021077	ENSELUG00000021151	sult2st2 (ENSELUG00000021184)	bsk146 (ENSELUG00000021441)	ENSELUG00000034405	ENSELUG00000021495	dhrs7cb (ENSELUG00000021537)	ENSELUG00000031240	hs3st3l (ENSELUG00000021570)	ENSELUG00000026219	ENSELUG00000021603	pts (ENSELUG00000021740) #22	ENSELUG00000021771	gas7a (ENSELUG00000021792)	adprm (ENSELUG00000021889)	map2k4b (ENSELUG00000021939)	MYOCD (ENSELUG00000022024)	ENSELUG00000026536	DNAH17 (ENSELUG00000022292)	SHISA6 (ENSELUG00000022348)	ENSELUG00000022374	foxk2a (ENSELUG00000022427)	wdr45b (ENSELUG00000022460)	mrpl58 (ENSELUG00000022498)	CDR2L (ENSELUG00000022542)	sap30bp (ENSELUG00000022580)	itgb4 (ENSELUG00000023106)
Salmoninae	ANCESTRAL SPECIES		ENSGT00980000202217	ENSGT00940000157100.b.g	ENSGT00390000014840.b	ENSGT00940000154768.A.b.l	ENSGT01050000244814.a.b.b.a.b	ENSGT00940000166074.A.d	ENSGT00940000156268.a.a.b	ENSGT00940000163461.a.a.a.a	ENSGT01050000244814.a.b.b.a.a	ENSGT00940000166074.A.c.b	ENSGT00940000156268.a.a.a.a	ENSGT00940000164626.b.a.a.b.a	ENSGT00940000154768.A.b.k.a	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b.q	ENSGT00940000164626.b.a.a.a.h.b.b	ENSGT00940000161336.b	ENSGT00390000004323.b	ENSGT00940000168279	ENSGT00940000154744.b.a.a.a	ENSGT00730000111191	ENSGT00940000156854.t	ENSGT00990000210470	ENSGT00940000162720.b.a.a.b.a.b	ENSGT00940000177272	ENSGT00940000162720.b.a.a.b.a.a	ENSGT00940000155709.j	ENSGT00940000156555.i.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	10828															ENSHHUG00000018415	ENSHHUG00000018407 #22
Huchen	MODERN SPECIES	323														ENSHHUG00000045831	ENSHHUG00000045842	PTS (ENSHHUG00000045845) #22	ENSHHUG00000045854	gas7a (ENSHHUG00000045891)	ENSHHUG00000045904	ENSHHUG00000045957	ENSHHUG00000045964	ENSHHUG00000045972	ENSHHUG00000045979	adprm (ENSHHUG00000045983)	map2k4b (ENSHHUG00000046000)	MYOCD (ENSHHUG00000046368)	ENSHHUG00000046387	dnah9 (ENSHHUG00000046390)	SHISA6 (ENSHHUG00000046403)	foxk2a (ENSHHUG00000046408)	wdr45b (ENSHHUG00000046415)
Salmoninae_a	ANCESTRAL SPECIES	45	ENSGT00940000153496.a.b.a.d.a	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.b.b	ENSGT00940000154768.A.b.k.a	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b.q	ENSGT00940000163461.a.a.a.b.c.a	ENSGT00940000164626.b.a.a.a.h.b.b	ENSGT00940000161336.b	ENSGT00390000014667	ENSGT00940000154744.a.b.j	ENSGT00950000182979.a.b.b.b.a.c.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s.y	ENSGT00940000162720.b.a.a.a.b	ENSGT00940000155709.i.c	ENSGT00940000157510.b	ENSGT00390000013268	ENSGT00390000018570.b.a.b
Oncorhynchus	ANCESTRAL SPECIES	23	ENSGT00940000153496.a.b.a.d.a	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.b.b	ENSGT00940000154768.A.b.k.a	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b.q	ENSGT00940000163461.a.a.a.b.c.a	ENSGT00390000014667	ENSGT00940000154744.a.b.j	ENSGT00950000182979.a.b.b.b.a.c.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s.z.b.b	ENSGT00940000156854.s.y	ENSGT00940000162720.b.a.a.a.b	ENSGT00940000155709.i.c	ENSGT00940000157510.b	ENSGT00390000013268	ENSGT00390000018570.b.a.b	ENSGT01000000216149.b
Oncorhynchus_a	ANCESTRAL SPECIES	18	ENSGT00940000153496.a.b.a.d.a	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.b.b	ENSGT00940000154768.A.b.k.a	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b.q	ENSGT00940000163461.a.a.a.b.c.a	ENSGT00390000014667	ENSGT00940000154744.a.b.j	ENSGT00950000182979.a.b.b.b.a.c.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s.y	ENSGT00940000162720.b.a.a.a.b	ENSGT00940000155709.i.c	ENSGT00940000157510.b	ENSGT00390000013268	ENSGT00390000018570.b.a.b	ENSGT01000000216149.b	ENSGT00390000007870.m
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	17	ENSOTSG00005043299	ENSOTSG00005043282	ENSOTSG00005012697	ENSOTSG00005012476	ENSOTSG00005012475	ENSOTSG00005012474	bsk146 (ENSOTSG00005012473)	ENSOTSG00005012472	ENSOTSG00005012304	dhrs7cb (ENSOTSG00005012294)	ENSOTSG00005012293	ENSOTSG00005012290	hs3st3l (ENSOTSG00005012289)	ENSOTSG00005012286	ENSOTSG00005012283	PTS (ENSOTSG00005012257) #22	ENSOTSG00005012244	gas7a (ENSOTSG00005012118)	ENSOTSG00005011906	adprm (ENSOTSG00005011847)	map2k4b (ENSOTSG00005009376)	MYOCD (ENSOTSG00005009374)	ENSOTSG00005009370	SHISA6 (ENSOTSG00005009368)	ENSOTSG00005009367	foxk2a (ENSOTSG00005009366)	wdr45b (ENSOTSG00005009273)	MRPL58 (ENSOTSG00005009271)	CDR2L (ENSOTSG00005009270)	ENSOTSG00005009269	sap30bp (ENSOTSG00005009268)
Chinook salmon	MODERN SPECIES	50	tob1b (ENSOTSG00005046454)	ENSOTSG00005046453	ENSOTSG00005046452	ENSOTSG00005025063	ENSOTSG00005024991	ENSOTSG00005024985	ENSOTSG00005024984	bsk146 (ENSOTSG00005024983)	ENSOTSG00005024982	ENSOTSG00005024973	dhrs7cb (ENSOTSG00005024970)	ENSOTSG00005024965	hs3st3l (ENSOTSG00005024964)	ENSOTSG00005024963	ENSOTSG00005024962	PTS (ENSOTSG00005024961) #22	ENSOTSG00005024960	ENSOTSG00005024954	ENSOTSG00005024950	adprm (ENSOTSG00005024939)	map2k4b (ENSOTSG00005024929)	MYOCD (ENSOTSG00005024927)	ENSOTSG00005024780	SHISA6 (ENSOTSG00005024774)	ENSOTSG00005024773	foxk2a (ENSOTSG00005024770)	wdr45b (ENSOTSG00005024649)	MRPL58 (ENSOTSG00005024646)	CDR2L (ENSOTSG00005040298)	ENSOTSG00005040297	sap30bp (ENSOTSG00005040296)
Coho salmon	MODERN SPECIES	17	ENSOKIG00005050522	tob1b (ENSOKIG00005050493)	ENSOKIG00005050492	ENSOKIG00005049358	ENSOKIG00005048812	sult2st2 (ENSOKIG00005048798)	ENSOKIG00005048747	bsk146 (ENSOKIG00005048736)	ENSOKIG00005048731	ENSOKIG00005048630	dhrs7cb (ENSOKIG00005048610)	ENSOKIG00005048606	hs3st3l (ENSOKIG00005048604)	ENSOKIG00005048600	ENSOKIG00005048594	PTS (ENSOKIG00005048587) #22	ENSOKIG00005048572	ENSOKIG00005048499	ENSOKIG00005048474	adprm (ENSOKIG00005048459)	map2k4b (ENSOKIG00005048408)	MYOCD (ENSOKIG00005048376)	ENSOKIG00005048202	SHISA6 (ENSOKIG00005048134)	FOXK2 (ENSOKIG00005048112)	wdr45b (ENSOKIG00005048063)	MRPL58 (ENSOKIG00005048052)	CDR2L (ENSOKIG00005048045)	sap30bp (ENSOKIG00005048033)	itgb4 (ENSOKIG00005045986)	ENSOKIG00005045875
Rainbow trout	MODERN SPECIES	12	ENSOMYG00000019694	tob1b (ENSOMYG00000019699)	ENSOMYG00000019704	ENSOMYG00000019854	ENSOMYG00000021277	sult2st2 (ENSOMYG00000021337)	ENSOMYG00000021411	bsk146 (ENSOMYG00000021458)	ENSOMYG00000021469	ENSOMYG00000021706	dhrs7cb (ENSOMYG00000022376)	ENSOMYG00000005293	hs3st3l (ENSOMYG00000005318)	ENSOMYG00000051443	ENSOMYG00000005403	ENSOMYG00000005494 #22	ENSOMYG00000005609	ENSOMYG00000006117	ENSOMYG00000049335	ENSOMYG00000053712	ENSOMYG00000048826	ENSOMYG00000006642	adprm (ENSOMYG00000006694)	ENSOMYG00000007056	ENSOMYG00000007209	ENSOMYG00000008960	ENSOMYG00000010009	ENSOMYG00000010022	ENSOMYG00000010057	ENSOMYG00000010109	ENSOMYG00000010142
Salmo	ANCESTRAL SPECIES	31	ENSGT00940000153496.a.b.a.d.a	ENSGT00940000154208.c.b.a	ENSGT00940000158031.c	ENSGT00940000163867.n	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b.f	ENSGT00940000156922.b.a.f	ENSGT00940000164958.a.d.a	ENSGT00940000157100.a.i	ENSGT01100000263520.a.a.a.a.b.a.c.a.a	ENSGT00940000154768.A.b.k.a	ENSGT01050000244814.a.b.a.h	ENSGT00940000158127.g	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b.q	ENSGT00940000163461.a.a.a.b.c.a	ENSGT00940000164626.b.a.a.a.h.b.b	ENSGT00940000161336.b	ENSGT00390000014667	ENSGT00940000154744.a.b.j	ENSGT00950000182979.a.b.b.b.a.c.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s.y	ENSGT00940000162720.b.a.a.a.b	ENSGT00940000155709.i.c	ENSGT00940000157510.b	ENSGT00390000013268	ENSGT00390000018570.b.a.b
Atlantic salmon	MODERN SPECIES	20	ENSSSAG00000069554	ENSSSAG00000069146	ENSSSAG00000069083	bsk146 (ENSSSAG00000069073)	ENSSSAG00000069068	ENSSSAG00000081902	ENSSSAG00000068705	dhrs7c (ENSSSAG00000068680)	ENSSSAG00000121037	hs3st3l (ENSSSAG00000104478)	ENSSSAG00000108791	ENSSSAG00000117669	ENSSSAG00000109700	ENSSSAG00000090310	glp2r (ENSSSAG00000068655)	ENSSSAG00000068636 #22	ENSSSAG00000085993	ENSSSAG00000068608	ENSSSAG00000111707	ENSSSAG00000001640	ENSSSAG00000066775	ENSSSAG00000066677	adprm (ENSSSAG00000066668)	ENSSSAG00000107901	ENSSSAG00000066387	ENSSSAG00000065882	ENSSSAG00000107904	ENSSSAG00000111936	ENSSSAG00000065815	ENSSSAG00000076637	ENSSSAG00000065783
River trout	MODERN SPECIES	1	tob1b (ENSSTUG00000031207)	ENSSTUG00000031204	ENSSTUG00000017823	ENSSTUG00000017467	ENSSTUG00000017434	ENSSTUG00000017426	ENSSTUG00000017254	bsk146 (ENSSTUG00000017226)	ENSSTUG00000017214	ENSSTUG00000016652	dhrs7cb (ENSSTUG00000016599)	ENSSTUG00000016589	hs3st3l (ENSSTUG00000016573)	ENSSTUG00000016565	ENSSTUG00000016554	PTS (ENSSTUG00000016532) #22	ENSSTUG00000016455	gas7a (ENSSTUG00000016019)	ENSSTUG00000015988	ENSSTUG00000015969	adprm (ENSSTUG00000015966)	map2k4b (ENSSTUG00000015568)	MYOCD (ENSSTUG00000015524)	ENSSTUG00000011156	SHISA6 (ENSSTUG00000011015)	ENSSTUG00000049406	foxk2a (ENSSTUG00000049400)	wdr45b (ENSSTUG00000049379)	MRPL58 (ENSSTUG00000049377)	CDR2L (ENSSTUG00000049375)	sap30bp (ENSSTUG00000049372)
Acanthomorphata	ANCESTRAL SPECIES	147	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000176040	ENSGT00940000164189	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510
Cod	MODERN SPECIES	9	ENSGMOG00000034694	ENSGMOG00000035983	ENSGMOG00000000029	ENSGMOG00000030902	ENSGMOG00000034955	ENSGMOG00000023316	ENSGMOG00000022639	bsk146 (ENSGMOG00000011939)	ENSGMOG00000033962	ENSGMOG00000011945	ENSGMOG00000020572	dhrs7cb (ENSGMOG00000011968)	hs3st3l (ENSGMOG00000011497)	ENSGMOG00000011505	ENSGMOG00000005923	ENSGMOG00000005950 #22	ENSGMOG00000001779	ENSGMOG00000001812	HS3ST2 (ENSGMOG00000009169)	ENSGMOG00000009175	COG7 (ENSGMOG00000009206)	ENSGMOG00000007884	ENSGMOG00000007862	ENSGMOG00000007850	ENSGMOG00000022944	ENSGMOG00000019121	ENSGMOG00000006074	ENSGMOG00000006016	ENSGMOG00000005985	ENSGMOG00000026107	ENSGMOG00000034215
Euacanthomorphacea	ANCESTRAL SPECIES	34	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000176040	ENSGT00940000164189	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT01100000263533.b.b.a.b.b
Percomorphaceae	ANCESTRAL SPECIES	5	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000176040	ENSGT00940000164189	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00840000130048.a
Tiger tail seahorse	MODERN SPECIES	105								bsk146 (ENSHCOG00000002034)	ENSHCOG00000002040	ENSHCOG00000002093	dhrs7cb (ENSHCOG00000002131)	hs3st3l (ENSHCOG00000002145)	ENSHCOG00000002150	ENSHCOG00000002158	GLP2R (ENSHCOG00000002181)	PTS (ENSHCOG00000002193) #22	ENSHCOG00000002205	gas7a (ENSHCOG00000002216)	ENSHCOG00000002232	ENSHCOG00000002241	adprm (ENSHCOG00000002249)	map2k4b (ENSHCOG00000002257)	ENSHCOG00000002275
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.A	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000176040	ENSGT00940000164189	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00950000182977.B.b.b.a	ENSGT00950000182977.B.b.b.b	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00950000182977.B.b.b.a	ENSGT00950000182977.B.b.b.b	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648
Anabantaria	ANCESTRAL SPECIES	29									ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00390000016895	ENSGT00940000177288.B	ENSGT00940000177288.A	ENSGT00730000111029.a	ENSGT00940000166161	ENSGT00940000154322.B	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648
Climbing perch	MODERN SPECIES	10	ENSATEG00000000805	sult2st2 (ENSATEG00000000768)	ENSATEG00000000749	ENSATEG00000000673	ENSATEG00000028071	ENSATEG00000000646	ENSATEG00000000616	ENSATEG00000000409	bsk146 (ENSATEG00000000280)	ENSATEG00000000263	ENSATEG00000000245	dhrs7cb (ENSATEG00000000236)	hs3st3l (ENSATEG00000000164)	ENSATEG00000000131	ENSATEG00000000022	ENSATEG00000023993 #22	ENSATEG00000023988	ENSATEG00000023982	ENSATEG00000023975	adprm (ENSATEG00000023973)	map2k4b (ENSATEG00000023969)	ENSATEG00000023953	ENSATEG00000023933	ENSATEG00000023921	ENSATEG00000026429	ENSATEG00000023905	ENSATEG00000023897	ENSATEG00000023895	ENSATEG00000025595	ENSATEG00000023883	ENSATEG00000023881
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000017579	ENSBSLG00000017614	ENSBSLG00000017745	ENSBSLG00000017855	ENSBSLG00000017869	ENSBSLG00000017874	ENSBSLG00000017879	ENSBSLG00000017910	bsk146 (ENSBSLG00000018080)	ENSBSLG00000018092	ENSBSLG00000018331	dhrs7cb (ENSBSLG00000019878)	hs3st3l (ENSBSLG00000019892)	ENSBSLG00000019903	ENSBSLG00000019921	PTS (ENSBSLG00000019949) #22	ENSBSLG00000019964	ENSBSLG00000020036	RSPH1 (ENSBSLG00000020957)	adprm (ENSBSLG00000020999)	map2k4b (ENSBSLG00000021299)	ENSBSLG00000021986	ENSBSLG00000021996	SHISA6 (ENSBSLG00000022046)	ENSBSLG00000022322	foxk2a (ENSBSLG00000022348)	wdr45b (ENSBSLG00000022422)	ENSBSLG00000022496	kdelr2b (ENSBSLG00000022503)	mettl9 (ENSBSLG00000022511)	rab3gap1 (ENSBSLG00000004998)
Zig-zag eel	MODERN SPECIES	10								ENSMAMG00000019830	ENSMAMG00000019841	ENSMAMG00000019874	ENSMAMG00000019927	dhrs7cb (ENSMAMG00000019962)	hs3st3l (ENSMAMG00000019968)	ENSMAMG00000019978	ENSMAMG00000019992	ENSMAMG00000020007 #22	ENSMAMG00000020014	ENSMAMG00000020036	ENSMAMG00000020047	adprm (ENSMAMG00000020049)	map2k4b (ENSMAMG00000020056)	ENSMAMG00000026198	ENSMAMG00000020101	ENSMAMG00000020188	ENSMAMG00000020200	ENSMAMG00000020206	ENSMAMG00000020225	ENSMAMG00000025705	ENSMAMG00000020250	ENSMAMG00000020255	nme2a (ENSMAMG00000027961)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00840000130048.a	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000156268.a.b	ENSGT00940000161336	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00840000130048.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648	ENSGT01100000263520.a.a.a.b.a.a
Turbot	MODERN SPECIES	9	ENSSMAG00000003529	tob1b (ENSSMAG00000003500)	ENSSMAG00000003480	ENSSMAG00000003304	ENSSMAG00000003278	ENSSMAG00000003267	ENSSMAG00000003259	sult2st2 (ENSSMAG00000003231)	bsk146 (ENSSMAG00000003142)	ENSSMAG00000003114	ENSSMAG00000003019	dhrs7cb (ENSSMAG00000002981)	hs3st3l (ENSSMAG00000002973)	ENSSMAG00000002963	GLP2R (ENSSMAG00000002937)	ENSSMAG00000035692 #22	ENSSMAG00000002866	ENSSMAG00000037765	ENSSMAG00000002727	adprm (ENSSMAG00000002720)	map2k4b (ENSSMAG00000002636)	ENSSMAG00000002501	ENSSMAG00000002200	ENSSMAG00000031050	ENSSMAG00000031434	ENSSMAG00000027508	ENSSMAG00000002073	ENSSMAG00000002049	ENSSMAG00000036060	ENSSMAG00000001978	ENSSMAG00000001925
Tongue sole	MODERN SPECIES	18	mkln1 (ENSCSEG00000003253)	plekha5 (ENSCSEG00000003239)	aebp2 (ENSCSEG00000003233)	ndufa5 (ENSCSEG00000003227)	sult4a1 (ENSCSEG00000003217)	MPPED1 (ENSCSEG00000003212)	scube1 (ENSCSEG00000003187)	samm50l (ENSCSEG00000003177)	ALDH1L2 (ENSCSEG00000003165)	nopchap1 (ENSCSEG00000003158)	SLC41A2 (ENSCSEG00000003151)	chst11 (ENSCSEG00000003149)	ENSCSEG00000003146	COG5 (ENSCSEG00000003127)	ENSCSEG00000003114	PTS (ENSCSEG00000003110) #22	ENSCSEG00000003095	map2k4b (ENSCSEG00000003085)	adprm (ENSCSEG00000003081)	ENSCSEG00000003079	ENSCSEG00000003076	ENSCSEG00000003075	DNAH17 (ENSCSEG00000003040)	gas7a (ENSCSEG00000003030)	ENSCSEG00000003014	RSPH1 (ENSCSEG00000003009)	ENSCSEG00000003004	ARHGAP23 (ENSCSEG00000002974)	acbd4 (ENSCSEG00000002961)	PLCD3 (ENSCSEG00000002939)	DNAH3 (ENSCSEG00000002933)
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000177816	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00840000130048.a	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900.v	ENSGT00940000177816	ENSGT00940000164900.u	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000164626.b.b.d.r	ENSGT00940000161336	ENSGT00390000011596.a	ENSGT00940000153653.a.b.a.b	ENSGT00940000156623.g.b	ENSGT00940000173159	ENSGT00940000156544.a.d	ENSGT00940000156544.b	ENSGT00390000006167	ENSGT00940000153902.b.a	ENSGT00940000167780	ENSGT00940000162710.c.b	ENSGT00390000004836
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	1824																PTS (ENSSLDG00000009121) #22
Yellowtail amberjack	MODERN SPECIES	2373															ENSSLDG00000002167	PTS (ENSSLDG00000002137) #22	ENSSLDG00000002103
Yellowtail amberjack	MODERN SPECIES	31																PTS (ENSSLDG00000000434) #22
Yellowtail amberjack	MODERN SPECIES	2257																PTS (ENSSLDG00000022785) #22
Greater amberjack	MODERN SPECIES	27	tob1b (ENSSDUG00000011420)	ENSSDUG00000011409	ENSSDUG00000011362	ENSSDUG00000011217	ENSSDUG00000011136	ENSSDUG00000011030	ENSSDUG00000010793	bsk146 (ENSSDUG00000010751)	ENSSDUG00000010735	ENSSDUG00000010548	dhrs7cb (ENSSDUG00000010511)	ENSSDUG00000010503	hs3st3l (ENSSDUG00000010484)	GSG1L2 (ENSSDUG00000010453)	GLP2R (ENSSDUG00000010384)	PTS (ENSSDUG00000010373) #22	ENSSDUG00000010342	gas7a (ENSSDUG00000010307)	ENSSDUG00000010294	ENSSDUG00000010283	NT5M (ENSSDUG00000010270)	COPS3 (ENSSDUG00000010230)	usp22 (ENSSDUG00000010201)	ENSSDUG00000010184	SSTR2 (ENSSDUG00000010076)	ENSSDUG00000010044	SLC39A11 (ENSSDUG00000010004)	ASB12 (ENSSDUG00000009990)	ENSSDUG00000009981	ENSSDUG00000009527	SPATA20 (ENSSDUG00000009448)
Barramundi perch	MODERN SPECIES	473									bsk146 (ENSLCAG00010015560)	ENSLCAG00010015563	ENSLCAG00010015572	dhrs7cb (ENSLCAG00010015635)	hs3st3l (ENSLCAG00010015639)	ENSLCAG00010015643	GLP2R (ENSLCAG00010015647)	PTS (ENSLCAG00010015650) #22	ENSLCAG00010015661
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00840000130048.a	ENSGT00400000022326.b.a.b.a.b	ENSGT00940000162287.B.a.d.a
Tetraodontidae	ANCESTRAL SPECIES		ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000159664	ENSGT00390000004836	ENSGT00940000161625.n	ENSGT00940000162710.c.b	ENSGT00940000167780	ENSGT00940000180425	ENSGT00940000153902.b.a	ENSGT00390000006167	ENSGT00940000156544.b	ENSGT00940000156544.a.d	ENSGT00940000173159	ENSGT00940000156623.g.b	ENSGT00940000153653.a.b.a.b	ENSGT00390000011596.a
Tetraodon	MODERN SPECIES	13	CDR2L (ENSTNIG00000011512)	ENSTNIG00000011511	DAGLB (ENSTNIG00000011510)	SPAG9 (ENSTNIG00000011509)	tob1b (ENSTNIG00000011508)	WFIKKN2 (ENSTNIG00000004170)	ENSTNIG00000004171	ENSTNIG00000005723	bsk146 (ENSTNIG00000004140)	ENSTNIG00000000888	ENSTNIG00000004141	dhrs7cb (ENSTNIG00000006858)	hs3st3l (ENSTNIG00000006859)	ENSTNIG00000006860	ENSTNIG00000006861	PTS (ENSTNIG00000006862) #22	ENSTNIG00000000035	ENSTNIG00000006863	ENSTNIG00000006864	ENSTNIG00000007405	SPATA20 (ENSTNIG00000004455)	ENSTNIG00000004456	ENSTNIG00000004457	asb12a (ENSTNIG00000004458)	SLC39A11 (ENSTNIG00000004133)	ENSTNIG00000007400	SSTR2 (ENSTNIG00000007401)	usp22 (ENSTNIG00000007402)	COPS3 (ENSTNIG00000007403)	NT5M (ENSTNIG00000007404)	ENSTNIG00000006865
Fugu	MODERN SPECIES		DAGLB (ENSTRUG00000005319)	SPAG9 (ENSTRUG00000003579)	tob1b (ENSTRUG00000003534)	ENSTRUG00000003421	ENSTRUG00000002402	ENSTRUG00000031061	sult2st2 (ENSTRUG00000017213)	ENSTRUG00000023473	bsk146 (ENSTRUG00000017210)	ENSTRUG00000032088	ENSTRUG00000017208	dhrs7cb (ENSTRUG00000017206)	hs3st3l (ENSTRUG00000017205)	ENSTRUG00000017204	ENSTRUG00000017202	PTS (ENSTRUG00000019502) #22	ENSTRUG00000022295	CACNA1G (ENSTRUG00000017188)	SPATA20 (ENSTRUG00000030032)	ENSTRUG00000029217	pga (ENSTRUG00000020875)	ENSTRUG00000024317	ENSTRUG00000025559	asb12a (ENSTRUG00000019917)	SLC39A11 (ENSTRUG00000017178)	ENSTRUG00000022937	SSTR2 (ENSTRUG00000020419)	ENSTRUG00000023617	usp22 (ENSTRUG00000017175)	COPS3 (ENSTRUG00000017172)	ENSTRUG00000029213
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00840000130048.a	ENSGT00400000022326.b.a.b.a.b
Ballan wrasse	MODERN SPECIES	5	CHRM3 (ENSLBEG00000000012)	ENSLBEG00000000006	ENSLBEG00000028267	mtr (ENSLBEG00000028223)	bms1 (ENSLBEG00000028208)	ADO (ENSLBEG00000028197)	egr2b (ENSLBEG00000028192)	ENSLBEG00000028158	bsk146 (ENSLBEG00000028136)	ENSLBEG00000028125	ENSLBEG00000028089	dhrs7cb (ENSLBEG00000028056)	hs3st3l (ENSLBEG00000028048)	GSG1L2 (ENSLBEG00000028039)	ENSLBEG00000028027	PTS (ENSLBEG00000028014) #22	ENSLBEG00000027998	gas7a (ENSLBEG00000027974)	ENSLBEG00000027933	ENSLBEG00000027901	adprm (ENSLBEG00000027887)	map2k4b (ENSLBEG00000027864)	MYOCD (ENSLBEG00000027845)	DNAH17 (ENSLBEG00000027774)	SHISA6 (ENSLBEG00000027721)	ENSLBEG00000027699	ENSLBEG00000027688	foxk2a (ENSLBEG00000027681)	wdr45b (ENSLBEG00000027663)	ENSLBEG00000027641	ENSLBEG00000027630
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000177816	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000161336	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.b	ENSGT00940000162287.B.a.d.a
Gilthead seabream	MODERN SPECIES	12	ENSSAUG00010009491	NAGLU (ENSSAUG00010009494)	ipmkb (ENSSAUG00010009498)	ube2d1b (ENSSAUG00010009506)	tfam (ENSSAUG00010009521)	ENSSAUG00010009525	enpp7.2 (ENSSAUG00010009528)	ENSSAUG00010009541	bsk146 (ENSSAUG00010009543)	ENSSAUG00010009546	ENSSAUG00010009553	dhrs7cb (ENSSAUG00010009569)	hs3st3l (ENSSAUG00010009571)	ENSSAUG00010009575	ENSSAUG00010009580	PTS (ENSSAUG00010009586) #22	ENSSAUG00010009590	gas7a (ENSSAUG00010009614)	RSPH1 (ENSSAUG00010010557)	adprm (ENSSAUG00010010560)	map2k4b (ENSSAUG00010010564)	MYOCD (ENSSAUG00010012042)	DNAH17 (ENSSAUG00010012102)	SHISA6 (ENSSAUG00010012584)	ENSSAUG00010012592	ENSSAUG00010012594	foxk2a (ENSSAUG00010012597)	wdr45b (ENSSAUG00010012605)	ENSSAUG00010012623	kdelr2b (ENSSAUG00010012628)	mettl9 (ENSSAUG00010012631)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900.l	ENSGT00940000177816	ENSGT00940000164900.k	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000161336	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a
European seabass	MODERN SPECIES	11	ENSDLAG00005035129	ENSDLAG00005029819	ENSDLAG00005003423	ENSDLAG00005005838	ENSDLAG00005013800	ENSDLAG00005030054	ENSDLAG00005033641	ENSDLAG00005008076	bsk146 (ENSDLAG00005008164)	ENSDLAG00005008182	ENSDLAG00005008235	dhrs7cb (ENSDLAG00005009321)	hs3st3l (ENSDLAG00005009326)	ENSDLAG00005028015	GLP2R (ENSDLAG00005009342)	ENSDLAG00005029960 #22	ENSDLAG00005034037	ENSDLAG00005034877	ENSDLAG00005032441	ENSDLAG00005034332	ENSDLAG00005033923	ENSDLAG00005029148	ENSDLAG00005009366	ENSDLAG00005009395	ENSDLAG00005009454	ENSDLAG00005031583	ENSDLAG00005003179	ENSDLAG00005010325	adprm (ENSDLAG00005030530)	map2k4b (ENSDLAG00005010399)	ENSDLAG00005010907
Large yellow croaker	MODERN SPECIES	488	gsk3ab (ENSLCRG00005009414)	znf574 (ENSLCRG00005009393)	GRIK5 (ENSLCRG00005008415)	ENSLCRG00005008365	ENSLCRG00005008353	ENSLCRG00005008350	ENSLCRG00005008347	bsk146 (ENSLCRG00005008345)	ENSLCRG00005008344	ENSLCRG00005008189	dhrs7cb (ENSLCRG00005008185)	ENSLCRG00005008184	hs3st3l (ENSLCRG00005008183)	ENSLCRG00005008182	GLP2R (ENSLCRG00005008181)	PTS (ENSLCRG00005008180) #22	ENSLCRG00005008178	gas7a (ENSLCRG00005007043)	ENSLCRG00005007034	RSPH1 (ENSLCRG00005007033)	adprm (ENSLCRG00005007032)	map2k4b (ENSLCRG00005006926)	MYOCD (ENSLCRG00005006924)	DNAH17 (ENSLCRG00005006660)	SHISA6 (ENSLCRG00005006637)	ENSLCRG00005006635	foxk2a (ENSLCRG00005006633)	wdr45b (ENSLCRG00005006630)	ENSLCRG00005006628	ENSLCRG00005006626	kdelr2b (ENSLCRG00005006622)
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648	ENSGT00940000158256.g	ENSGT00950000182849.B.c.b.b
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c.b	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648	ENSGT00940000158256.g	ENSGT00950000182849.B.c.b.b
Pike perch	MODERN SPECIES	27	micall2a (ENSSLUG00000016076)	ENSSLUG00000016067	INTS1 (ENSSLUG00000013277)	mafk (ENSSLUG00000013200)	tmem184a (ENSSLUG00000012969)	psmg3 (ENSSLUG00000012940)	ELFN1 (ENSSLUG00000012934)	MRM2 (ENSSLUG00000012931)	nudt1 (ENSSLUG00000012926)	snx8a (ENSSLUG00000012673)	TTYH3 (ENSSLUG00000012629)	lfng (ENSSLUG00000012610)	rps11 (ENSSLUG00000012583)	baxa (ENSSLUG00000012573)	ENSSLUG00000012562	PTS (ENSSLUG00000012556) #22	gpatch8 (ENSSLUG00000012545)	gosr2 (ENSSLUG00000012536)	wnt9b (ENSSLUG00000012530)	ENSSLUG00000012525	SRCIN1 (ENSSLUG00000012516)	FMNL1 (ENSSLUG00000012466)	mlx (ENSSLUG00000012424)	psmc3ip (ENSSLUG00000012417)	ENSSLUG00000012408	tubg1 (ENSSLUG00000012347)	PLEKHH3 (ENSSLUG00000012321)	ENSSLUG00000012280	EZH1 (ENSSLUG00000010414)	ramp2 (ENSSLUG00000010355)	ENSSLUG00000010346
Channel bull blenny	MODERN SPECIES	10	SPAG9 (ENSCGOG00000022107)	tob1b (ENSCGOG00000022084)	ENSCGOG00000022082	ENSCGOG00000022080	ENSCGOG00000018623	ENSCGOG00000018561	sult2st2 (ENSCGOG00000018560)	ENSCGOG00000018558	bsk146 (ENSCGOG00000018552)	ENSCGOG00000018551	ENSCGOG00000017936	dhrs7cb (ENSCGOG00000017912)	hs3st3l (ENSCGOG00000017911)	ENSCGOG00000017910	ENSCGOG00000017861	PTS (ENSCGOG00000017856) #22	ENSCGOG00000017855	ENSCGOG00000017852	RSPH1 (ENSCGOG00000017843)	adprm (ENSCGOG00000017840)	map2k4b (ENSCGOG00000017230)	DNAH17 (ENSCGOG00000017194)	ENSCGOG00000017192	ENSCGOG00000017191	ENSCGOG00000017190	ENSCGOG00000017188	ENSCGOG00000017187	foxk2a (ENSCGOG00000017173)	ENSCGOG00000017169	wdr45b (ENSCGOG00000017077)	ENSCGOG00000017051
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00390000016052	ENSGT00940000154335.b	ENSGT00550000074823.b.a	ENSGT00390000018409.g	ENSGT00940000156169.a.a	ENSGT00690000103999	ENSGT00940000155989.d	ENSGT00390000005232	ENSGT00390000015484.i	ENSGT00390000015792	ENSGT00950000183033.a.a.c.b	ENSGT00940000154704.d.a	ENSGT00940000158678	ENSGT00390000014563.a.a.a	ENSGT00940000155830.e.a	ENSGT00390000002752 #22	ENSGT00390000015845	ENSGT00950000183195.b.b	ENSGT00940000166406	ENSGT00390000007512	ENSGT00940000158816.d	ENSGT00940000159856	ENSGT00940000167740	ENSGT00940000156555.i.a	ENSGT00390000002226	ENSGT00990000203619.A.b.b.b.a.f	ENSGT00940000155910.c.b.b	ENSGT00940000160064.a.a	ENSGT00390000015768.i.b	ENSGT00970000193381.a.b.a.a.b.b.a	ENSGT00940000155157.b
Lumpfish	MODERN SPECIES	10	rnls (ENSCLMG00005001445)	PTEN (ENSCLMG00005009828)	atad1b (ENSCLMG00005009827)	minpp1b (ENSCLMG00005009826)	ENSCLMG00005009825	bbs1 (ENSCLMG00005009806)	lect2.1 (ENSCLMG00005009738)	ENSCLMG00005009731	asah2 (ENSCLMG00005009543)	ENSCLMG00005009532	ENSCLMG00005009529	ENSCLMG00005009525	A1CF (ENSCLMG00005009522)	ENSCLMG00005009518	ENSCLMG00005009516	ENSCLMG00005009515 #22	heatr1 (ENSCLMG00005009476)	ENSCLMG00005009469	ENSCLMG00005006617	cox11 (ENSCLMG00005006570)	CBX2 (ENSCLMG00005006568)	ENSCLMG00005006567	ANKFN1 (ENSCLMG00005006565)	HLF (ENSCLMG00005006564)	ENSCLMG00005006509	OXER1 (ENSCLMG00005006507)	ENSCLMG00005006506	ENSCLMG00005006502	ENSCLMG00005006500	ENSCLMG00005006498	ENSCLMG00005006497
Stickleback	MODERN SPECIES	5	si:ch211-207i20.2 (ENSGACG00000010352)	ENSGACG00000010347	noc3l (ENSGACG00000010335)	nudt13 (ENSGACG00000010332)	rpp30 (ENSGACG00000010285)	ENSGACG00000010282	slc16a12b (ENSGACG00000010279)	ENSGACG00000010277	ENSGACG00000010271	bbs1 (ENSGACG00000010264)	lect2.1 (ENSGACG00000010252)	ENSGACG00000010248	A1CF (ENSGACG00000010241)	ENSGACG00000010237	ENSGACG00000010235	PTS (ENSGACG00000010227) #22	heatr1 (ENSGACG00000010205)	arg1 (ENSGACG00000010146)	cox11 (ENSGACG00000010135)	CBX2 (ENSGACG00000010130)	ANKFN1 (ENSGACG00000010120)	ENSGACG00000010117	ENSGACG00000010113	HLF (ENSGACG00000010103)	ENSGACG00000010100	ENSGACG00000010097	ENSGACG00000010087	dpysl4 (ENSGACG00000010073)	SYDE1 (ENSGACG00000010068)	ENSGACG00000010053	ENSGACG00000010049
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a
Ovalentaria_B	ANCESTRAL SPECIES	28	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a
Pomacentridae	ANCESTRAL SPECIES	39	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900.j	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a
Pomacentridae_A	ANCESTRAL SPECIES	134							ENSGT00940000164900.j	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a
Amphiprion	ANCESTRAL SPECIES	85	ENSGT00940000155309	ENSGT00390000005900	ENSGT00950000182849.B.c.b.b	ENSGT00940000158883.b	ENSGT00940000164900.j.b	ENSGT00940000164900.j.a.a	ENSGT00940000164900.j.a.b	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Orange clownfish	MODERN SPECIES	10	ENSAPEG00000016408	ENSAPEG00000016428	ENSAPEG00000016506	ENSAPEG00000016542	bsk146 (ENSAPEG00000016664)	ENSAPEG00000016716	ENSAPEG00000016735	dhrs7cb (ENSAPEG00000016878)	hs3st3l (ENSAPEG00000016913)	ENSAPEG00000016942	ENSAPEG00000016966	ENSAPEG00000016974	ENSAPEG00000016981	ENSAPEG00000017003	ENSAPEG00000017016	PTS (ENSAPEG00000017053) #22	ENSAPEG00000017065	ENSAPEG00000017123	ENSAPEG00000017173	RSPH1 (ENSAPEG00000017287)	adprm (ENSAPEG00000017345)	map2k4b (ENSAPEG00000017373)	MYOCD (ENSAPEG00000017512)	ENSAPEG00000017584	SHISA6 (ENSAPEG00000017831)	TMEM238L (ENSAPEG00000017853)	ENSAPEG00000017861	foxk2a (ENSAPEG00000017882)	ENSAPEG00000017934	wdr45b (ENSAPEG00000017950)	ENSAPEG00000018001
Clown anemonefish	MODERN SPECIES	3621	tmem151ba (ENSAOCG00000019144)	nfkbie (ENSAOCG00000019158)	slc35b2 (ENSAOCG00000019182)	hsp90ab1 (ENSAOCG00000019247)	rbm25b (ENSAOCG00000019308)	eif2s1b (ENSAOCG00000019340)	atp6v1d (ENSAOCG00000019384)	pals1b (ENSAOCG00000019449)	ENSAOCG00000019472	gphnb (ENSAOCG00000019671)	ENSAOCG00000019790	ENSAOCG00000001449	ENSAOCG00000019823	ENSAOCG00000019878	ENSAOCG00000019895	PTS (ENSAOCG00000019937) #22	metrnla (ENSAOCG00000019958)	ENSAOCG00000001475	ACSF2 (ENSAOCG00000020184)	ndel1b (ENSAOCG00000020245)	RNF222 (ENSAOCG00000020271)	ARHGAP44 (ENSAOCG00000020420)	hs3st3b1a (ENSAOCG00000020459)	pmp22a (ENSAOCG00000020469)	cdc42ep4a (ENSAOCG00000020479)	SDK2 (ENSAOCG00000020618)	ttyh2l (ENSAOCG00000020675)	CHMP6 (ENSAOCG00000020715)	baiap2a (ENSAOCG00000020796)	AATK (ENSAOCG00000020858)	ENSAOCG00000020882
Spiny chromis	MODERN SPECIES	270																PTS (ENSAPOG00000003686) #22	ENSAPOG00000003672	ENSAPOG00000003599	ENSAPOG00000003580	RSPH1 (ENSAPOG00000003483)	adprm (ENSAPOG00000003472)	map2k4b (ENSAPOG00000003450)	MYOCD (ENSAPOG00000003395)	dnah9 (ENSAPOG00000003359)	ENSAPOG00000003272	ENSAPOG00000003255
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	2073															ENSSPAG00000010798	PTS (ENSSPAG00000010780) #22
Bicolor damselfish	MODERN SPECIES	169																PTS (ENSSPAG00000001311) #22
Cichlidae	ANCESTRAL SPECIES	28	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Midas cichlid	MODERN SPECIES	843						ENSACIG00000001598	ENSACIG00000001514	bsk146 (ENSACIG00000001494)	ENSACIG00000001480	ENSACIG00000001470	ENSACIG00000001300	dhrs7cb (ENSACIG00000001206)	hs3st3l (ENSACIG00000001190)	GSG1L2 (ENSACIG00000001144)	ENSACIG00000000925	PTS (ENSACIG00000000898) #22	ENSACIG00000000836	gas7a (ENSACIG00000000803)	ENSACIG00000000683	RSPH1 (ENSACIG00000000594)	adprm (ENSACIG00000000541)	map2k4b (ENSACIG00000000521)	MYOCD (ENSACIG00000000485)	DNAH17 (ENSACIG00000000242)	ENSACIG00000000210	ENSACIG00000000203	ENSACIG00000023293	ENSACIG00000023290	foxk2a (ENSACIG00000023287)	wdr45b (ENSACIG00000023279)	ENSACIG00000023274
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000154208.c.b	ENSGT00940000160624	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT01080000257338.A.b.d.b.a.a.a.a.b.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Nile tilapia	MODERN SPECIES	20	SPAG9 (ENSONIG00000019590)	tob1b (ENSONIG00000021200)	WFIKKN2 (ENSONIG00000019589)	ENSONIG00000019586	ENSONIG00000019585	sult2st2 (ENSONIG00000019581)	ENSONIG00000027287	bsk146 (ENSONIG00000019578)	ENSONIG00000034733	ENSONIG00000019573	dhrs7cb (ENSONIG00000019572)	hs3st3l (ENSONIG00000019571)	ENSONIG00000028825	ENSONIG00000030625	ENSONIG00000019565	PTS (ENSONIG00000029984) #22	ENSONIG00000019562	ENSONIG00000019561	ENSONIG00000019541	map2k4b (ENSONIG00000019536)	MYOCD (ENSONIG00000019532)	DNAH17 (ENSONIG00000019524)	SHISA6 (ENSONIG00000019522)	ENSONIG00000030725	ENSONIG00000029421	foxk2a (ENSONIG00000019520)	wdr45b (ENSONIG00000019519)	ENSONIG00000040277	ENSONIG00000019518	kdelr2b (ENSONIG00000019517)	mettl9 (ENSONIG00000029188)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Lyretail cichlid	MODERN SPECIES	337	SPAG9 (ENSNBRG00000013598)	tob1b (ENSNBRG00000013593)	WFIKKN2 (ENSNBRG00000013585)	ENSNBRG00000013326	ENSNBRG00000013235	sult2st2 (ENSNBRG00000013053)	ENSNBRG00000012925	bsk146 (ENSNBRG00000012899)	ENSNBRG00000012890	ENSNBRG00000012879	ENSNBRG00000012829	dhrs7cb (ENSNBRG00000012793)	hs3st3l (ENSNBRG00000012775)	ENSNBRG00000012766	ENSNBRG00000012607	ENSNBRG00000012564 #22	ENSNBRG00000012530	ENSNBRG00000012505	ENSNBRG00000012418	ENSNBRG00000012397	adprm (ENSNBRG00000012389)	map2k4b (ENSNBRG00000012365)	ENSNBRG00000012337	ENSNBRG00000012320	ENSNBRG00000012141	ENSNBRG00000012111	ENSNBRG00000012093	ENSNBRG00000012085	foxk2a (ENSNBRG00000012059)	wdr45b (ENSNBRG00000012017)	ENSNBRG00000012008
Haplochromini	ANCESTRAL SPECIES	22	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Burton s mouthbrooder	MODERN SPECIES	328	DAGLB (ENSHBUG00000001098)	SPAG9 (ENSHBUG00000006048)	tob1b (ENSHBUG00000006073)	ENSHBUG00000006079	ENSHBUG00000006240	ENSHBUG00000006277	sult2st2 (ENSHBUG00000006292)	ENSHBUG00000006385	bsk146 (ENSHBUG00000006399)	ENSHBUG00000006420	ENSHBUG00000006461	dhrs7cb (ENSHBUG00000006484)	hs3st3l (ENSHBUG00000006491)	ENSHBUG00000006498	ENSHBUG00000006536	PTS (ENSHBUG00000006569) #22	ENSHBUG00000006591	gas7a (ENSHBUG00000006622)	ENSHBUG00000006713	RSPH1 (ENSHBUG00000006740)	adprm (ENSHBUG00000006748)	map2k4b (ENSHBUG00000006850)	map2k4b (ENSHBUG00000006894)	MYOCD (ENSHBUG00000006978)	DNAH17 (ENSHBUG00000007561)	SHISA6 (ENSHBUG00000007645)
Haplochromini_A	ANCESTRAL SPECIES	24	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
P. nyererei	MODERN SPECIES	300	DAGLB (ENSPNYG00000007301)	SPAG9 (ENSPNYG00000007317)	tob1b (ENSPNYG00000007390)	ENSPNYG00000007398	ENSPNYG00000007415	ENSPNYG00000007493	sult2st2 (ENSPNYG00000007560)	ENSPNYG00000007593	bsk146 (ENSPNYG00000007740)	ENSPNYG00000007802	ENSPNYG00000007826	dhrs7cb (ENSPNYG00000007945)	hs3st3l (ENSPNYG00000007968)	ENSPNYG00000008052	ENSPNYG00000008120	PTS (ENSPNYG00000008149) #22	ENSPNYG00000008174	ENSPNYG00000008220	RSPH1 (ENSPNYG00000008306)	adprm (ENSPNYG00000008330)	map2k4b (ENSPNYG00000008340)	ENSPNYG00000008372	DNAH17 (ENSPNYG00000008442)	ENSPNYG00000008623	ENSPNYG00000008665	ENSPNYG00000008680	foxk2a (ENSPNYG00000008691)	wdr45b (ENSPNYG00000008725)	ENSPNYG00000008761	ENSPNYG00000008773	kdelr2b (ENSPNYG00000008786)
Haplochromini_B	ANCESTRAL SPECIES	24	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000163461.a.a.a.b.d	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Zebra mbuna	MODERN SPECIES	1111	tob1b (ENSMZEG00005005215)	ENSMZEG00005005209	ENSMZEG00005005089	ENSMZEG00005005053	ENSMZEG00005005017	ENSMZEG00005004988	sult2st2 (ENSMZEG00005004967)	ENSMZEG00005004884	bsk146 (ENSMZEG00005004872)	ENSMZEG00005004862	ENSMZEG00005004744	dhrs7cb (ENSMZEG00005004727)	hs3st3l (ENSMZEG00005004699)	ENSMZEG00005004664	ENSMZEG00005004619	PTS (ENSMZEG00005004575) #22	ENSMZEG00005004546	gas7a (ENSMZEG00005004517)	ENSMZEG00005003992	RSPH1 (ENSMZEG00005003956)	adprm (ENSMZEG00005003946)	map2k4b (ENSMZEG00005003937)	MYOCD (ENSMZEG00005003907)	DNAH17 (ENSMZEG00005003739)	SHISA6 (ENSMZEG00005003675)	ENSMZEG00005003663	foxk2a (ENSMZEG00005003627)	wdr45b (ENSMZEG00005003577)	ENSMZEG00005003570	ENSMZEG00005003562	kdelr2b (ENSMZEG00005003541)
Eastern happy	MODERN SPECIES	20	ENSACLG00000023254	ENSACLG00000023302	ENSACLG00000023473	sult2st2 (ENSACLG00000023496)	ENSACLG00000023516	ENSACLG00000023634	bsk146 (ENSACLG00000023640)	ENSACLG00000023664	ENSACLG00000023684	ENSACLG00000023870	ENSACLG00000023878	hs3st3l (ENSACLG00000023888)	ENSACLG00000023897	ENSACLG00000023904	GLP2R (ENSACLG00000023920)	PTS (ENSACLG00000023957) #22	ENSACLG00000023998	ENSACLG00000024003	gas7a (ENSACLG00000024039)	ENSACLG00000024072	ENSACLG00000024082	RSPH1 (ENSACLG00000024132)	adprm (ENSACLG00000024143)	map2k4b (ENSACLG00000024155)	ENSACLG00000024360	DNAH17 (ENSACLG00000024439)	SHISA6 (ENSACLG00000024638)	ENSACLG00000024675	foxk2a (ENSACLG00000024693)	wdr45b (ENSACLG00000024707)	ENSACLG00000024738
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Oryzias	ANCESTRAL SPECIES	11	ENSGT00940000164900	ENSGT00940000169412.d	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.s	ENSGT00940000164958.a.t	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000157276.d	ENSGT00950000183195.b.b	ENSGT00390000015845	ENSGT00940000155830.e.a	ENSGT00940000158678	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00840000130048.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648	ENSGT00940000158256.g	ENSGT00940000158410.g.b
Oryzias_b	ANCESTRAL SPECIES	9															ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00840000130048.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648	ENSGT00940000158256.g	ENSGT00940000158410.g.b
Indian medaka	MODERN SPECIES	17	kdelr2b (ENSOMEG00000002743)	ENSOMEG00000002735	wdr45b (ENSOMEG00000002726)	foxk2a (ENSOMEG00000002711)	mtr (ENSOMEG00000002695)	ENSOMEG00000002662	ENSOMEG00000002604	FAM171A2 (ENSOMEG00000002596)	grnb (ENSOMEG00000002589)	ENSOMEG00000002568	ENSOMEG00000002559	GRB7 (ENSOMEG00000002544)	ENSOMEG00000002509	vps8 (ENSOMEG00000002421)	ENSOMEG00000002336	PTS (ENSOMEG00000022440) #22	ENSOMEG00000022418	gas7a (ENSOMEG00000022385)	RSPH1 (ENSOMEG00000022351)	adprm (ENSOMEG00000022302)	map2k4b (ENSOMEG00000022222)	MYOCD (ENSOMEG00000022092)	ENSOMEG00000021972	SHISA6 (ENSOMEG00000021918)	ENSOMEG00000021818	ENSOMEG00000021774	ENSOMEG00000021651	sult2st2 (ENSOMEG00000021524)	ENSOMEG00000021511	cep131 (ENSOMEG00000021468)	ENSOMEG00000021386
Javanese ricefish	MODERN SPECIES	10	grnb (ENSOJAG00000003985)	ENSOJAG00000003945	ENSOJAG00000003908	GRB7 (ENSOJAG00000003682)	srcin1b (ENSOJAG00000003625)	ENSOJAG00000003537	FMNL1 (ENSOJAG00000022422)	ccr10 (ENSOJAG00000022386)	ENSOJAG00000022376	ENSOJAG00000022373	ENSOJAG00000022368	ENSOJAG00000022366	ENSOJAG00000022363	ENSOJAG00000022331	ENSOJAG00000022276	PTS (ENSOJAG00000022269) #22	ENSOJAG00000022228	gas7a (ENSOJAG00000022206)	RSPH1 (ENSOJAG00000022180)	adprm (ENSOJAG00000022173)	map2k4b (ENSOJAG00000021882)	ENSOJAG00000021836	SHISA6 (ENSOJAG00000021815)	ENSOJAG00000021798	foxk2a (ENSOJAG00000021787)	wdr45b (ENSOJAG00000021767)	ENSOJAG00000021761	kdelr2b (ENSOJAG00000021758)	mettl9 (ENSOJAG00000021755)	ENSOJAG00000021722	CRHR1 (ENSOJAG00000020804)
Oryzias_a	ANCESTRAL SPECIES	49	ENSGT00940000164863	ENSGT00940000164900	ENSGT00940000169412.d	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a.t	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000157276.d	ENSGT00950000183195.b.b	ENSGT00390000015845	ENSGT00940000155830.e.a	ENSGT00940000158678	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00940000162720.b.a.a.a	ENSGT00940000156854.s	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154744.a.b	ENSGT00390000014667.r
Japanese Medaka HdrR	MODERN SPECIES	10	hs3st3l (ENSORLG00000027143)	ENSORLG00000013524	ENSORLG00000013515	arg1 (ENSORLG00000013422)	ENSORLG00000013383	ENSORLG00000029857	A1CF (ENSORLG00000013342)	ENSORLG00000022830	ENSORLG00000023537	ENSORLG00000013297	ADPRM (ENSORLG00000013160)	ENSORLG00000023669	ENSORLG00000023406	ENSORLG00000013155	ENSORLG00000028640	PTS (ENSORLG00000013141) #22	ENSORLG00000024552	ENSORLG00000013126	ENSORLG00000013104	RSPH1 (ENSORLG00000013075)	ENSORLG00000027234	ENSORLG00000022413	ENSORLG00000022792	MYOCD (ENSORLG00000013047)	map2k4b (ENSORLG00000013013)	adprm (ENSORLG00000023410)	ENSORLG00000012992	wdr45b (ENSORLG00000012984)	ENSORLG00000023791	kdelr2b (ENSORLG00000012960)	mettl9 (ENSORLG00000012946)
Chinese medaka	MODERN SPECIES	2712																PTS (ENSOSIG00000001725) #22
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Cyprinodontoidei	ANCESTRAL SPECIES	28	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
NAME_4	ANCESTRAL SPECIES	27	ENSGT00940000156486	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000176040	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00840000130048.a.b	ENSGT00840000130048.a.a	ENSGT00390000004010.a.b.a.b
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	648									ENSCVAG00000018591	ENSCVAG00000018633	dhrs7cb (ENSCVAG00000018644)	hs3st3l (ENSCVAG00000018650)	ENSCVAG00000018669	ENSCVAG00000018696	ENSCVAG00000018728	PTS (ENSCVAG00000018774) #22	ENSCVAG00000018794	ENSCVAG00000018840	gas7a (ENSCVAG00000018922)
Sheepshead minnow	MODERN SPECIES	10																ENSCVAG00000022758 #22
Mummichog	MODERN SPECIES	2209	DAGLB (ENSFHEG00000018338)	SPAG9 (ENSFHEG00000018441)	tob1b (ENSFHEG00000018451)	ENSFHEG00000018464	ENSFHEG00000018647	ENSFHEG00000018670	sult2st2 (ENSFHEG00000018680)	ENSFHEG00000019025	bsk146 (ENSFHEG00000019092)	ENSFHEG00000019097	ENSFHEG00000019128	dhrs7cb (ENSFHEG00000019150)	hs3st3l (ENSFHEG00000019168)	ENSFHEG00000019193	GLP2R (ENSFHEG00000019228)	PTS (ENSFHEG00000019262) #22	ENSFHEG00000019306	gas7a (ENSFHEG00000019316)	ENSFHEG00000019342	ENSFHEG00000019351	adprm (ENSFHEG00000019356)	map2k4b (ENSFHEG00000019381)	ENSFHEG00000019399
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867.p	ENSGT00940000163867.o	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
Poecilia	ANCESTRAL SPECIES	15	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867.p	ENSGT00940000163867.o	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b
NAME_6	ANCESTRAL SPECIES		ENSGT00940000156486.c	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867.o	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00950000182979.a.b.b.b.a.c	ENSGT00940000159717	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000155709.i	ENSGT00940000157510	ENSGT00940000162287.B.a.d.b	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648	ENSGT00940000158256.g
Sailfin molly	MODERN SPECIES	2442															GLP2R (ENSPLAG00000013878)	PTS (ENSPLAG00000013845) #22
Amazon molly	MODERN SPECIES	256	tob1b (ENSPFOG00000020246)	ENSPFOG00000018726	WFIKKN2 (ENSPFOG00000018728)	ENSPFOG00000018731	ENSPFOG00000018740	ENSPFOG00000018797	sult2st2 (ENSPFOG00000018827)	ENSPFOG00000018833	bsk146 (ENSPFOG00000018838)	ENSPFOG00000018849	ENSPFOG00000018859	dhrs7cb (ENSPFOG00000018884)	hs3st3l (ENSPFOG00000018893)	ENSPFOG00000018898	GLP2R (ENSPFOG00000018904)	PTS (ENSPFOG00000018906) #22	ENSPFOG00000018908	ENSPFOG00000018922	RSPH1 (ENSPFOG00000018941)	adprm (ENSPFOG00000018948)	map2k4b (ENSPFOG00000018954)	ENSPFOG00000018965	dnah9 (ENSPFOG00000023091)	DNAH17 (ENSPFOG00000019003)	SHISA6 (ENSPFOG00000019086)	foxk2a (ENSPFOG00000019094)	wdr45b (ENSPFOG00000019108)	ENSPFOG00000024188	kdelr2b (ENSPFOG00000019115)	mettl9 (ENSPFOG00000019120)	CASKIN2 (ENSPFOG00000019128)
Guppy	MODERN SPECIES	449	ENSPREG00000018707	tob1b (ENSPREG00000018697)	ENSPREG00000018689	ENSPREG00000018577	ENSPREG00000018508	ENSPREG00000018480	sult2st2 (ENSPREG00000018412)	ENSPREG00000018332	bsk146 (ENSPREG00000018315)	ENSPREG00000018302	ENSPREG00000018238	dhrs7cb (ENSPREG00000018215)	hs3st3l (ENSPREG00000018211)	ENSPREG00000018205	GLP2R (ENSPREG00000018116)	pts (ENSPREG00000018060) #22	ENSPREG00000018008	ENSPREG00000017951	ENSPREG00000017932	adprm (ENSPREG00000017920)	map2k4b (ENSPREG00000017879)	ENSPREG00000017836	DNAH17 (ENSPREG00000017737)	SHISA6 (ENSPREG00000017636)	ENSPREG00000017603	foxk2a (ENSPREG00000017575)	wdr45b (ENSPREG00000017550)	ENSPREG00000017518	ENSPREG00000017501	kdelr2b (ENSPREG00000017485)	mettl9 (ENSPREG00000017464)
Platyfish	MODERN SPECIES	1	SPAG9 (ENSXMAG00000012309)	tob1b (ENSXMAG00000019465)	ENSXMAG00000012308	ENSXMAG00000012203	ENSXMAG00000023506	ENSXMAG00000003234	sult2st2 (ENSXMAG00000005413)	ENSXMAG00000005408	bsk146 (ENSXMAG00000005403)	ENSXMAG00000005400	ENSXMAG00000021924	dhrs7cb (ENSXMAG00000005349)	hs3st3l (ENSXMAG00000009759)	ENSXMAG00000009767	GLP2R (ENSXMAG00000005305)	PTS (ENSXMAG00000005299) #22	ENSXMAG00000005292	ENSXMAG00000025598	RSPH1 (ENSXMAG00000005275)	adprm (ENSXMAG00000026522)	map2k4b (ENSXMAG00000005241)	ENSXMAG00000005228	DNAH17 (ENSXMAG00000011648)	SHISA6 (ENSXMAG00000027975)	ENSXMAG00000025582	foxk2a (ENSXMAG00000011644)	wdr45b (ENSXMAG00000027380)	ENSXMAG00000024430	ENSXMAG00000025611	kdelr2b (ENSXMAG00000011618)	mettl9 (ENSXMAG00000026514)
Aplocheiloidei	ANCESTRAL SPECIES	93	ENSGT00940000153496.a.b.a	ENSGT00940000154208.c.b	ENSGT00940000158031.c	ENSGT00940000163867	ENSGT00940000164726.b	ENSGT00940000164900	ENSGT00940000169412	ENSGT00940000165096.b.b	ENSGT00940000156922.b.a	ENSGT00940000164958.a	ENSGT01090000260189	ENSGT00940000157100.a	ENSGT00940000154768.A.b	ENSGT01050000244814.a.b.a	ENSGT00940000158127	ENSGT00390000002752 #22	ENSGT00940000160705.C.b	ENSGT00940000156268.a.b	ENSGT00940000157240	ENSGT00390000014667	ENSGT00940000154744.a.b	ENSGT00980000203041	ENSGT00940000154076.C.d	ENSGT00940000156854.s	ENSGT00940000162720.b.a.a.a	ENSGT00940000155709.i	ENSGT00940000157510.d	ENSGT00840000130048.a.b	ENSGT00940000162287.B.a.d.a	ENSGT00390000004010.a.b.a.b	ENSGT00390000013648
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	35	DAGLB (ENSKMAG00000000202)	SPAG9 (ENSKMAG00000000215)	tob1b (ENSKMAG00000000403)	ENSKMAG00000000421	ENSKMAG00000000460	ENSKMAG00000000666	sult2st2 (ENSKMAG00000000733)	ENSKMAG00000000830	bsk146 (ENSKMAG00000000978)	ENSKMAG00000001030	ENSKMAG00000001047	dhrs7cb (ENSKMAG00000001100)	hs3st3l (ENSKMAG00000001118)	GSG1L2 (ENSKMAG00000001126)	GLP2R (ENSKMAG00000001155)	PTS (ENSKMAG00000001178) #22	ENSKMAG00000001190	PEMT (ENSKMAG00000001216)	rasd1 (ENSKMAG00000001232)	NT5M (ENSKMAG00000001254)	COPS3 (ENSKMAG00000001310)	usp22 (ENSKMAG00000001375)	ENSKMAG00000001423	SSTR2 (ENSKMAG00000001434)	ENSKMAG00000001446	SLC39A11 (ENSKMAG00000001464)	ENSKMAG00000001507	asb12a (ENSKMAG00000001515)	ENSKMAG00000001534	ENSKMAG00000001645	SPATA20 (ENSKMAG00000001655)
Mangrove rivulus	MODERN SPECIES	42	mia (ENSKMAG00000022230)	CRYAB (ENSKMAG00000022228) #11	ENSKMAG00000022227	DIXDC1 (ENSKMAG00000022224) #14	dlat (ENSKMAG00000022223) #15	zgc:165604 (ENSKMAG00000022220)	PCNX3 (ENSKMAG00000022213)	NRXN2 (ENSKMAG00000022205)	pygma (ENSKMAG00000022200)	slc22a6l (ENSKMAG00000022195)	nrg2a (ENSKMAG00000022193)	puraa (ENSKMAG00000022190)	zgc:100829 (ENSKMAG00000022187)	CXXC5 (ENSKMAG00000022185)	ppp3ca (ENSKMAG00000022181)	ENSKMAG00000022178 #22	dnajc18 (ENSKMAG00000022177)	ENSKMAG00000022176	gng8 (ENSKMAG00000022174)	tmem45b (ENSKMAG00000022172)	nfrkb (ENSKMAG00000022166)	RYR1 (ENSKMAG00000020504)	sms (ENSKMAG00000018618)	ENSKMAG00000018561	gabrr3a (ENSKMAG00000018544)	ENSKMAG00000018510	ENSKMAG00000018487	ENSKMAG00000018472	ENSKMAG00000018462	ENSKMAG00000018450	ENSKMAG00000018434
Turquoise killifish	MODERN SPECIES	58																PTS (ENSNFUG00015022051) #22	ENSNFUG00015022068	CABZ01102038.1 (ENSNFUG00015022106)
Pinecone sodierfish	MODERN SPECIES	10	DAGLB (ENSMMDG00005016899)	SPAG9 (ENSMMDG00005017338)	tob1b (ENSMMDG00005017695)	ENSMMDG00005017697	ENSMMDG00005017787	ENSMMDG00005022900	sult2st2 (ENSMMDG00005022907)	ENSMMDG00005022914	bsk146 (ENSMMDG00005022921)	ENSMMDG00005022922	ENSMMDG00005022926	dhrs7cb (ENSMMDG00005022945)	hs3st3l (ENSMMDG00005022991)	ENSMMDG00005022993	ENSMMDG00005022996	PTS (ENSMMDG00005023004) #22	gas7a (ENSMMDG00005023007)	ENSMMDG00005023009	adprm (ENSMMDG00005023014)	map2k4b (ENSMMDG00005023032)	MYOCD (ENSMMDG00005023392)	DNAH17 (ENSMMDG00005023410)	SHISA6 (ENSMMDG00005023411)	ENSMMDG00005023413	foxk2a (ENSMMDG00005023415)	wdr45b (ENSMMDG00005023418)	ENSMMDG00005023420	ENSMMDG00005023422	ENSMMDG00005023426	kdelr2b (ENSMMDG00005023427)	mettl9 (ENSMMDG00005023429)
Elephant shark	MODERN SPECIES	1495	tsen54 (ENSCMIG00000002142)	SPATA20 (ENSCMIG00000002260)	CACNA1G (ENSCMIG00000002800)	FDXR (ENSCMIG00000003454)	ENSCMIG00000003577	ENSCMIG00000003597	ENSCMIG00000003616	ENSCMIG00000003629	dhrs7ca (ENSCMIG00000003670)	ENSCMIG00000003672	hs3st3l (ENSCMIG00000003677)	GSG1L2 (ENSCMIG00000003682)	GLP2R (ENSCMIG00000003686)	rcvrn3 (ENSCMIG00000003688)	ENSCMIG00000003691	PTS (ENSCMIG00000003693) #22	ENSCMIG00000003697	gas7a (ENSCMIG00000003745)	ENSCMIG00000004850	ENSCMIG00000006815	ENSCMIG00000006959	ENSCMIG00000007463	sco1 (ENSCMIG00000007649)	adprm (ENSCMIG00000007651)	ENSCMIG00000007654	map2k4b (ENSCMIG00000007694)	MYOCD (ENSCMIG00000007793)	elac2 (ENSCMIG00000007803)	ENSCMIG00000008002	SHISA6 (ENSCMIG00000008359)	ENSCMIG00000008361
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00390000002752 #22
Lamprey	MODERN SPECIES	3745																PTS (ENSPMAG00000009460) #22
Hagfish	MODERN SPECIES	378																ENSEBUG00000001407 #22	ENSEBUG00000003071	ENSEBUG00000010970	ENSEBUG00000003418
Ciona	ANCESTRAL SPECIES																	ENSGT00390000002752 #22
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000005116	ENSCING00000005115	ENSCING00000005111	ENSCING00000013506	ENSCING00000021914	ENSCING00000015439	ENSCING00000016392	ENSCING00000020994	ENSCING00000013509	ENSCING00000005106	ENSCING00000005105	ENSCING00000020963	ENSCING00000020532	ENSCING00000005097	ENSCING00000021775	ENSCING00000013511 #22	ENSCING00000005096	ENSCING00000020241	ENSCING00000005094	ENSCING00000013512	ENSCING00000005092	ENSCING00000020147	ENSCING00000005090	ENSCING00000013515	ENSCING00000013516	ENSCING00000020805	ENSCING00000005086	ENSCING00000022997	ENSCING00000021194	ENSCING00000005076	erf2 (ENSCING00000005070)
Ciona savignyi	MODERN SPECIES	180	ENSCSAVG00000003070	ENSCSAVG00000003064	ENSCSAVG00000003060	ENSCSAVG00000003054	ENSCSAVG00000003046	ENSCSAVG00000003036	ENSCSAVG00000003032	ENSCSAVG00000003027	ENSCSAVG00000003017	ENSCSAVG00000003010	ENSCSAVG00000003008	ENSCSAVG00000003000	ENSCSAVG00000002992	ENSCSAVG00000002972	ENSCSAVG00000002957	ENSCSAVG00000002946 #22	ENSCSAVG00000002943	ENSCSAVG00000002939	ENSCSAVG00000002931	ENSCSAVG00000002921	ENSCSAVG00000002915	ENSCSAVG00000002910	ENSCSAVG00000002880	ENSCSAVG00000002828	ENSCSAVG00000002809	ENSCSAVG00000002805	ENSCSAVG00000002796	ENSCSAVG00000002793	ENSCSAVG00000002787	ENSCSAVG00000002781	ENSCSAVG00000002777