Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00730000111880	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Glires	ANCESTRAL SPECIES	8	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Lagomorpha	ANCESTRAL SPECIES	45	ENSGT00940000162895 #7	ENSGT00940000162335	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244	ENSGT00930000150973.B
Rabbit	MODERN SPECIES	6	NEUROG2 (ENSOCUG00000007063) #7	ENSOCUG00000010848 #8	ALPK1 (ENSOCUG00000024991) #9	TIFA (ENSOCUG00000017578) #10	AP1AR (ENSOCUG00000004413) #11	FAM241A (ENSOCUG00000011383) #12	PITX2 (ENSOCUG00000012685) #13	ENPEP (ENSOCUG00000016264) #14	ELOVL6 (ENSOCUG00000013069) #15	EGF (ENSOCUG00000016388) #16	LRIT3 (ENSOCUG00000003908) #17	MCUB (ENSOCUG00000013751) #18	RRH (ENSOCUG00000034648) #19	GAR1 (ENSOCUG00000003901) #20	CFI (ENSOCUG00000003892) #21	CASP6 (ENSOCUG00000034509) #22	ENSOCUG00000036219 #23	SEC24B (ENSOCUG00000001284) #24	ENSOCUG00000031162 #25	ENSOCUG00000035839 #26	COL25A1 (ENSOCUG00000000201) #27	ETNPPL (ENSOCUG00000015610) #28	ENSOCUG00000011056 #29	ENSOCUG00000029357 #30	ENSOCUG00000021006 #31	ENSOCUG00000024066 #32	LEF1 (ENSOCUG00000010436) #33	HADH (ENSOCUG00000014271) #34	CYP2U1 (ENSOCUG00000002281) #35	SGMS2 (ENSOCUG00000009998) #36	PAPSS1 (ENSOCUG00000004622) #37
Pika	MODERN SPECIES	445																ENSOPRG00000017047 #22	MCUB (ENSOPRG00000017044) #18
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000162789 #13	ENSGT00940000168645	ENSGT00940000154340.A #12	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Naked mole-rat female	MODERN SPECIES	19	PAPSS1 (ENSHGLG00000001783) #37	ENSHGLG00000038714 #35	HADH (ENSHGLG00000032988) #34	LEF1 (ENSHGLG00000046551) #33	RPL34 (ENSHGLG00000050296) #30	ENSHGLG00000001959 #29	ENSHGLG00000004469 #28	ENSHGLG00000047113 #13	ENPEP (ENSHGLG00000002965) #14	ELOVL6 (ENSHGLG00000037368) #15	ENSHGLG00000034086	ENSHGLG00000002404 #16	RRH (ENSHGLG00000004643) #19	GAR1 (ENSHGLG00000000493) #20	PLA2G12A (ENSHGLG00000000692)	CASP6 (ENSHGLG00000000729) #22	ENSHGLG00000000975 #18	ENSHGLG00000001432 #24	ENSHGLG00000003109	ENSHGLG00000036692	ENSHGLG00000046553	ENSHGLG00000001486	LARP7 (ENSHGLG00000002716)	NEUROG2 (ENSHGLG00000044856) #7	ENSHGLG00000020125	ALPK1 (ENSHGLG00000019570) #9	TIFA (ENSHGLG00000033392) #10	ENSHGLG00000002634 #11	ENSHGLG00000035535	ENSHGLG00000048412 #12	ENSHGLG00000037923
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000162789 #13	ENSGT00940000168645	ENSGT00940000154340.A #12	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Guinea pig	MODERN SPECIES	43	ENSCPOG00000038161	ALPK1 (ENSCPOG00000008412) #9	TIFA (ENSCPOG00000036501) #10	AP1AR (ENSCPOG00000032660) #11	ENSCPOG00000005214	FAM241A (ENSCPOG00000013964) #12	ENSCPOG00000009459	ENPEP (ENSCPOG00000000701) #14	ELOVL6 (ENSCPOG00000038802) #15	EGF (ENSCPOG00000000779) #16	LRIT3 (ENSCPOG00000000776) #17	RRH (ENSCPOG00000004217) #19	GAR1 (ENSCPOG00000004216) #20	CFI (ENSCPOG00000004214) #21	PLA2G12A (ENSCPOG00000004212)	CASP6 (ENSCPOG00000031434) #22	ENSCPOG00000002110 #18	ENSCPOG00000022594	SEC24B (ENSCPOG00000009212) #24	COL25A1 (ENSCPOG00000012595) #27	ETNPPL (ENSCPOG00000015368) #28	OSTC (ENSCPOG00000039456) #29	ENSCPOG00000037181 ##30	LEF1 (ENSCPOG00000013758) #33	HADH (ENSCPOG00000024229) #34	CYP2U1 (ENSCPOG00000011750) #35	SGMS2 (ENSCPOG00000032233) #36	PAPSS1 (ENSCPOG00000011505) #37	DKK2 (ENSCPOG00000030616)	AIMP1 (ENSCPOG00000006734)	TBCK (ENSCPOG00000006708)
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000168645	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Degu	MODERN SPECIES	57	ENSODEG00000009949	ENSODEG00000019796	ENSODEG00000010616	FAM241A (ENSODEG00000011489) #12	ENSODEG00000019979	PITX2 (ENSODEG00000010082) #13	ENSODEG00000010195 #14	ENSODEG00000011196 #15	ENSODEG00000009818 #16	ENSODEG00000010355	LRIT3 (ENSODEG00000014302) #17	RRH (ENSODEG00000010773) #19	GAR1 (ENSODEG00000011083) #20	CFI (ENSODEG00000010069) #21	ENSODEG00000011603	CASP6 (ENSODEG00000010252) #22	MCUB (ENSODEG00000010641) #18	SEC24B (ENSODEG00000011940) #24	ENSODEG00000019962	ENSODEG00000011204	COL25A1 (ENSODEG00000011565) #27	ETNPPL (ENSODEG00000011007) #28	OSTC (ENSODEG00000011874) #29	ENSODEG00000012716 #30	ENSODEG00000019987	LEF1 (ENSODEG00000010436) #33	HADH (ENSODEG00000011168) #34	CYP2U1 (ENSODEG00000010344) #35	SGMS2 (ENSODEG00000010387) #36	PAPSS1 (ENSODEG00000012464) #37	DKK2 (ENSODEG00000013005)
Long-tailed chinchilla	MODERN SPECIES	203								ENSCLAG00000002990	ELOVL6 (ENSCLAG00000003163) #15	EGF (ENSCLAG00000003331) #16	LRIT3 (ENSCLAG00000004694) #17	RRH (ENSCLAG00000005130) #19	GAR1 (ENSCLAG00000005335) #20	CFI (ENSCLAG00000006216) #21	PLA2G12A (ENSCLAG00000006595)	CASP6 (ENSCLAG00000003293) #22	MCUB (ENSCLAG00000003597) #18	SEC24B (ENSCLAG00000004027) #24	ENSCLAG00000002421	COL25A1 (ENSCLAG00000002719) #27	ETNPPL (ENSCLAG00000002982) #28	OSTC (ENSCLAG00000003790) #29	ENSCLAG00000003911 ##30	LEF1 (ENSCLAG00000003044) #33	HADH (ENSCLAG00000003966) #34	CYP2U1 (ENSCLAG00000002674) #35	SGMS2 (ENSCLAG00000002723) #36	PAPSS1 (ENSCLAG00000002840) #37	DKK2 (ENSCLAG00000002881)	GIMD1 (ENSCLAG00000003485)	AIMP1 (ENSCLAG00000003954)
Sciuridae	ANCESTRAL SPECIES	43	ENSGT00940000162642	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Marmotini	ANCESTRAL SPECIES	51	ENSGT00940000162642	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984.e #34	ENSGT00940000157714.g #35	ENSGT00940000157714.h #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Marmotini_b	ANCESTRAL SPECIES	164	ENSGT00940000162642	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00730000111880	ENSGT00940000157910 #28
Squirrel	MODERN SPECIES	163	ENSSTOG00000025752	ENSSTOG00000011761	NEUROG2 (ENSSTOG00000011758) #7	ALPK1 (ENSSTOG00000023490) #9	TIFA (ENSSTOG00000024540) #10	AP1AR (ENSSTOG00000011726) #11	FAM241A (ENSSTOG00000026762) #12	ENSSTOG00000025728	ENPEP (ENSSTOG00000019984) #14	ELOVL6 (ENSSTOG00000013096) #15	LRIT3 (ENSSTOG00000019825) #17	RRH (ENSSTOG00000026445) #19	GAR1 (ENSSTOG00000005577) #20	CFI (ENSSTOG00000013356) #21	PLA2G12A (ENSSTOG00000007365)	CASP6 (ENSSTOG00000022572) #22	MCUB (ENSSTOG00000012419) #18	SEC24B (ENSSTOG00000025309) #24	ENSSTOG00000030771	ETNPPL (ENSSTOG00000021812) #28
Arctic ground squirrel	MODERN SPECIES	681																CASP6 (ENSUPAG00010023134) #22	MCUB (ENSUPAG00010000046) #18	SEC24B (ENSUPAG00010000070) #24	ENSUPAG00010000214
Alpin marmot	MODERN SPECIES	14	TIFA (ENSMMMG00000011166) #10	AP1AR (ENSMMMG00000011129) #11	ENSMMMG00000011118 #12	ENSMMMG00000011114	ENSMMMG00000011061	ENPEP (ENSMMMG00000011011) #14	ENSMMMG00000011001	ELOVL6 (ENSMMMG00000010968) #15	EGF (ENSMMMG00000010685) #16	ENSMMMG00000010673	LRIT3 (ENSMMMG00000010663) #17	RRH (ENSMMMG00000010634) #19	GAR1 (ENSMMMG00000010623) #20	CFI (ENSMMMG00000010613) #21	PLA2G12A (ENSMMMG00000010605)	CASP6 (ENSMMMG00000010597) #22	SEC24B (ENSMMMG00000010546) #24	COL25A1 (ENSMMMG00000010402) #27	ETNPPL (ENSMMMG00000010343) #28	OSTC (ENSMMMG00000010326) #29	RPL34 (ENSMMMG00000010314) #30	LEF1 (ENSMMMG00000010193) #33	ENSMMMG00000010164 #34	ENSMMMG00000010161 #35	ENSMMMG00000010155 #35	SGMS2 (ENSMMMG00000010143) #36	PAPSS1 (ENSMMMG00000010079) #37	DKK2 (ENSMMMG00000010025)	ENSMMMG00000009991	GIMD1 (ENSMMMG00000009944)	AIMP1 (ENSMMMG00000009938)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005025981 #10	ENSSVLG00005025982 #11	FAM241A (ENSSVLG00005025983) #12	ENSSVLG00005025985	ENSSVLG00005025987	ENPEP (ENSSVLG00005025988) #14	ENSSVLG00005025989	ENSSVLG00005025991	ELOVL6 (ENSSVLG00005025992) #15	EGF (ENSSVLG00005025994) #16	LRIT3 (ENSSVLG00005025995) #17	RRH (ENSSVLG00005025996) #19	GAR1 (ENSSVLG00005025997) #20	CFI (ENSSVLG00005025998) #21	PLA2G12A (ENSSVLG00005025999)	ENSSVLG00005026000 #22	MCUB (ENSSVLG00005026001) #18	SEC24B (ENSSVLG00005026003) #24	ENSSVLG00005026004	COL25A1 (ENSSVLG00005026005) #27	ENSSVLG00005026006	ETNPPL (ENSSVLG00005026007) #28	OSTC (ENSSVLG00005026008) #29	RPL34 (ENSSVLG00005026009) ##30	ENSSVLG00005026011	ENSSVLG00005026012 #33	HADH (ENSSVLG00005026013) #34	CYP2U1 (ENSSVLG00005026014) #35	SGMS2 (ENSSVLG00005026015) #36	PAPSS1 (ENSSVLG00005026017) #37	DKK2 (ENSSVLG00005026018)
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005023476	FOXJ1 (ENSSVLG00005023500)	EXOC7 (ENSSVLG00005023572)	ZACN (ENSSVLG00005023709)	GALR2 (ENSSVLG00005023761)	ENSSVLG00005023780	SRP68 (ENSSVLG00005023814)	EVPL (ENSSVLG00005023880)	CDK3 (ENSSVLG00005023973)	TEN1 (ENSSVLG00005023999)	ACOX1 (ENSSVLG00005024030)	FBF1 (ENSSVLG00005024129)	MRPL38 (ENSSVLG00005024310)	TRIM65 (ENSSVLG00005024357)	TRIM47 (ENSSVLG00005024378)	ENSSVLG00005024393 #22	ENSSVLG00005024404	WBP2 (ENSSVLG00005024432)	UNC13D (ENSSVLG00005024494)	UNK (ENSSVLG00005024600)	ENSSVLG00005024623	GALK1 (ENSSVLG00005024646)	SAP30BP (ENSSVLG00005005528)	RECQL5 (ENSSVLG00005005580)	ENSSVLG00005005683	SMIM5 (ENSSVLG00005005693)	ENSSVLG00005005738	ENSSVLG00005005769	LLGL2 (ENSSVLG00005005886)	TSEN54 (ENSSVLG00005005927)	ENSSVLG00005005957
Eurasian red squirrel	MODERN SPECIES	17	CRYBB3 (ENSSVLG00005010026)	CRYBB2 (ENSSVLG00005010113)	GRK3 (ENSSVLG00005010169)	ENSSVLG00005010401	SEZ6L (ENSSVLG00005010713)	ASPHD2 (ENSSVLG00005012225)	HPS4 (ENSSVLG00005012268)	SRRD (ENSSVLG00005012323)	TFIP11 (ENSSVLG00005012439)	TPST2 (ENSSVLG00005012485)	CRYBB1 (ENSSVLG00005012526)	CRYBA4 (ENSSVLG00005012608)	MN1 (ENSSVLG00005012679)	PITPNB (ENSSVLG00005012735)	TTC28 (ENSSVLG00005012954)	ENSSVLG00005013048 #22	CHEK2 (ENSSVLG00005013622)	HSCB (ENSSVLG00005013889)	ENSSVLG00005013977	XBP1 (ENSSVLG00005014110)	ENSSVLG00005014358	ZNRF3 (ENSSVLG00005014418)	C22orf31 (ENSSVLG00005014531)	KREMEN1 (ENSSVLG00005014585)	EMID1 (ENSSVLG00005014741)	RHBDD3 (ENSSVLG00005015229)	ENSSVLG00005015564	GAS2L1 (ENSSVLG00005016901)	RASL10A (ENSSVLG00005016957)	AP1B1 (ENSSVLG00005017064)	ENSSVLG00005017183
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Myomorpha	ANCESTRAL SPECIES	42	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Muroidea	ANCESTRAL SPECIES	53	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000162642	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	66	Zgrf1 (ENSCGRG00001021317)	Alpk1 (ENSCGRG00001007859) #9	Tifa (ENSCGRG00001002217) #10	Ap1ar (ENSCGRG00001002312) #11	ENSCGRG00001000195	Fam241a (ENSCGRG00001015267) #12	Pitx2 (ENSCGRG00001020811)	Enpep (ENSCGRG00001007343) #14	ELOVL6 (ENSCGRG00001016844) #15	Egf (ENSCGRG00001015336) #16	Lrit3 (ENSCGRG00001024786) #17	Rrh (ENSCGRG00001022555) #19	Gar1 (ENSCGRG00001003919) #20	Cfi (ENSCGRG00001008062) #21	Pla2g12a (ENSCGRG00001020911)	ENSCGRG00001021697 #22	Mcub (ENSCGRG00001013554) #18	Sec24b (ENSCGRG00001011377) #24	Col25a1 (ENSCGRG00001016091) #27	Etnppl (ENSCGRG00001001866) #28	ENSCGRG00001012885 #29	Rpl34 (ENSCGRG00001011923) ##30	Lef1 (ENSCGRG00001022697) #33	Hadh (ENSCGRG00001022551) #34	Cyp2u1 (ENSCGRG00001000440) #35	Sgms2 (ENSCGRG00001022561) #36	Papss1 (ENSCGRG00001022641) #37	Dkk2 (ENSCGRG00001015913)	Gimd1 (ENSCGRG00001011642)	Aimp1 (ENSCGRG00001012622)	Tbck (ENSCGRG00001014137)
Chinese hamster chok1gshd	MODERN SPECIES	1	Adgra2 (ENSCGRG00001017775)	Brf2 (ENSCGRG00001016656)	ENSCGRG00001009456	Got1l1 (ENSCGRG00001008254)	Adrb3 (ENSCGRG00001013361)	Eif4ebp1 (ENSCGRG00001012311)	Chrnb3 (ENSCGRG00001024861)	Chrna6 (ENSCGRG00001024796)	ENSCGRG00001024660	Unc5d (ENSCGRG00001016022)	Dusp26 (ENSCGRG00001016001)	Rnf122 (ENSCGRG00001015247)	Tti2 (ENSCGRG00001014541)	Mak16 (ENSCGRG00001016542)	Fut10 (ENSCGRG00001014936)	ENSCGRG00001014339 #22	Nrg1 (ENSCGRG00001024689)	ENSCGRG00001022694	Wrn (ENSCGRG00001016491)	Purg (ENSCGRG00001015485)	Tex15 (ENSCGRG00001014732)	Ppp2cb (ENSCGRG00001024500)	Ubxn8 (ENSCGRG00001024281)	Gsr (ENSCGRG00001023740)	Smim18 (ENSCGRG00001006260)	Gtf2e2 (ENSCGRG00001004129)	Rbpms (ENSCGRG00001002814)	Dctn6 (ENSCGRG00001001182)	Mboat4 (ENSCGRG00001015723)	Leprotl1 (ENSCGRG00001000543)	Saraf (ENSCGRG00001024847)
Golden Hamster	MODERN SPECIES	754	Neurog2 (ENSMAUG00000004901) #7	Alpk1 (ENSMAUG00000013220) #9	Tifa (ENSMAUG00000007473) #10	Fam241a (ENSMAUG00000019220) #12	ENSMAUG00000002975	ENSMAUG00000006513	ENSMAUG00000000316 #13	Enpep (ENSMAUG00000002734) #14	ENSMAUG00000019195	ENSMAUG00000015497 #16	Lrit3 (ENSMAUG00000015406) #17	Rrh (ENSMAUG00000016461) #19	Gar1 (ENSMAUG00000016788) #20	Cfi (ENSMAUG00000020863) #21	Pla2g12a (ENSMAUG00000019760)	Casp6 (ENSMAUG00000012070) #22	Mcub (ENSMAUG00000002957) #18	Sec24b (ENSMAUG00000017584) #24	Col25a1 (ENSMAUG00000011716) #27	Etnppl (ENSMAUG00000014103) #28	Ostc (ENSMAUG00000017087) #29	ENSMAUG00000014918 ##30	ENSMAUG00000002715	Lef1 (ENSMAUG00000005718) #33	Hadh (ENSMAUG00000015697) #34	Cyp2u1 (ENSMAUG00000015035) #35	Sgms2 (ENSMAUG00000010473) #36	Papss1 (ENSMAUG00000014765) #37
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Prairie vole	MODERN SPECIES	8	ENSMOCG00000016693	Neurog2 (ENSMOCG00000001166) #7	Alpk1 (ENSMOCG00000019085) #9	Tifa (ENSMOCG00000004620) #10	ENSMOCG00000012032	Fam241a (ENSMOCG00000012965) #12	ENSMOCG00000000185 #13	Enpep (ENSMOCG00000015521) #14	Elovl6 (ENSMOCG00000001659) #15	ENSMOCG00000006880 #16	Lrit3 (ENSMOCG00000012841) #17	Rrh (ENSMOCG00000014201) #19	Gar1 (ENSMOCG00000001340) #20	Cfi (ENSMOCG00000013835) #21	Pla2g12a (ENSMOCG00000000301)	Casp6 (ENSMOCG00000019140) #22	Mcub (ENSMOCG00000001391) #18	Sec24b (ENSMOCG00000010749) #24	Col25a1 (ENSMOCG00000005127) #27	Etnppl (ENSMOCG00000013627) #28	Ostc (ENSMOCG00000003130) #29	ENSMOCG00000012371 ##30	Lef1 (ENSMOCG00000017897) #33	Hadh (ENSMOCG00000002166) #34	Cyp2u1 (ENSMOCG00000012427) #35	Sgms2 (ENSMOCG00000008205) #36	Papss1 (ENSMOCG00000012328) #37	ENSMOCG00000013454	Dkk2 (ENSMOCG00000016432)	Gimd1 (ENSMOCG00000017308)	ENSMOCG00000001103
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	19	ENSPEMG00000008182	Neurog2 (ENSPEMG00000027945) #7	Alpk1 (ENSPEMG00000004361) #9	Tifa (ENSPEMG00000024630) #10	Ap1ar (ENSPEMG00000025779) #11	ENSPEMG00000026286 #12	Pitx2 (ENSPEMG00000026986)	Enpep (ENSPEMG00000012340) #14	Elovl6 (ENSPEMG00000030330) #15	Egf (ENSPEMG00000016237) #16	Lrit3 (ENSPEMG00000008291) #17	Rrh (ENSPEMG00000008715) #19	Gar1 (ENSPEMG00000015838) #20	Cfi (ENSPEMG00000017557) #21	Pla2g12a (ENSPEMG00000014433)	ENSPEMG00000011964 #22	Mcub (ENSPEMG00000008411) #18	Sec24b (ENSPEMG00000016956) #24	Col25a1 (ENSPEMG00000000474) #27	Etnppl (ENSPEMG00000009696) #28	Ostc (ENSPEMG00000001349) #29	ENSPEMG00000010540 ##30	Lef1 (ENSPEMG00000011796) #33	Hadh (ENSPEMG00000020330) #34	Cyp2u1 (ENSPEMG00000012213) #35	Sgms2 (ENSPEMG00000027110) #36	Papss1 (ENSPEMG00000008733) #37	Dkk2 (ENSPEMG00000024321)	Gimd1 (ENSPEMG00000010104)	Aimp1 (ENSPEMG00000003730)	Tbck (ENSPEMG00000008071)
Northern American deer mouse	MODERN SPECIES	4	ENSPEMG00000029175	Sphkap (ENSPEMG00000023700)	Daw1 (ENSPEMG00000013917)	Ccl20 (ENSPEMG00000023283)	Krtap28-13 (ENSPEMG00000026790)	Gm47969 (ENSPEMG00000027248)	Slc19a3 (ENSPEMG00000021706)	Agfg1 (ENSPEMG00000024218)	Tm4sf20 (ENSPEMG00000009177)	Mff (ENSPEMG00000013271)	Col4a3 (ENSPEMG00000022581)	Col4a4 (ENSPEMG00000023902)	Rhbdd1 (ENSPEMG00000022110)	Irs1 (ENSPEMG00000021324)	Nyap2 (ENSPEMG00000010633)	ENSPEMG00000000818 #22	Dock10 (ENSPEMG00000015775)	Gm45261 (ENSPEMG00000011756)	Cul3 (ENSPEMG00000015883)	Fam124b (ENSPEMG00000012555)	Serpine2 (ENSPEMG00000015844)	Mrpl44 (ENSPEMG00000012661)	Wdfy1 (ENSPEMG00000008677)	Ap1s3 (ENSPEMG00000026332)	ENSPEMG00000014464 ##30	Scg2 (ENSPEMG00000017237)	Kcne4 (ENSPEMG00000028440)	Acsl3 (ENSPEMG00000011122)	Utp14b (ENSPEMG00000028398)	Mogat1 (ENSPEMG00000014100)	Farsb (ENSPEMG00000003131)
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mus	ANCESTRAL SPECIES	7	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mouse	MODERN SPECIES	12	Zgrf1 (ENSMUSG00000051278)	Neurog2 (ENSMUSG00000027967) #7	Alpk1 (ENSMUSG00000028028) #9	Tifa (ENSMUSG00000046688) #10	Ap1ar (ENSMUSG00000074238) #11	Fam241a (ENSMUSG00000050549) #12	Pitx2 (ENSMUSG00000028023)	Enpep (ENSMUSG00000028024) #14	Elovl6 (ENSMUSG00000041220) #15	Egf (ENSMUSG00000028017) #16	Lrit3 (ENSMUSG00000093865) #17	Rrh (ENSMUSG00000028012) #19	Gar1 (ENSMUSG00000028010) #20	Cfi (ENSMUSG00000058952) #21	Pla2g12a (ENSMUSG00000027999)	Casp6 (ENSMUSG00000027997) #22	Mcub (ENSMUSG00000027994) #18	Sec24b (ENSMUSG00000001052) #24	Col25a1 (ENSMUSG00000058897) #27	Etnppl (ENSMUSG00000019232) #28	Ostc (ENSMUSG00000041084) #29	Rpl34 (ENSMUSG00000062006) ##30	Lef1 (ENSMUSG00000027985) #33	Hadh (ENSMUSG00000027984) #34	Cyp2u1 (ENSMUSG00000027983) #35	Sgms2 (ENSMUSG00000050931) #36	Papss1 (ENSMUSG00000028032) #37	Dkk2 (ENSMUSG00000028031)	Gimd1 (ENSMUSG00000091721)	Aimp1 (ENSMUSG00000028029)	Tbck (ENSMUSG00000028030)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
spretus	MODERN SPECIES	12	Zgrf1 (MGP_SPRETEiJ_G0026568)	Neurog2 (MGP_SPRETEiJ_G0026569) #7	Alpk1 (MGP_SPRETEiJ_G0026570) #9	Tifa (MGP_SPRETEiJ_G0026571) #10	Ap1ar (MGP_SPRETEiJ_G0026572) #11	Fam241a (MGP_SPRETEiJ_G0026573) #12	Pitx2 (MGP_SPRETEiJ_G0026574)	Enpep (MGP_SPRETEiJ_G0026575) #14	Elovl6 (MGP_SPRETEiJ_G0026576) #15	Egf (MGP_SPRETEiJ_G0026577) #16	Lrit3 (MGP_SPRETEiJ_G0026578) #17	Rrh (MGP_SPRETEiJ_G0026579) #19	Gar1 (MGP_SPRETEiJ_G0026580) #20	MGP_SPRETEiJ_G0026581 #21	Pla2g12a (MGP_SPRETEiJ_G0026582)	Casp6 (MGP_SPRETEiJ_G0026583) #22	Mcub (MGP_SPRETEiJ_G0026584) #18	Sec24b (MGP_SPRETEiJ_G0026585) #24	Col25a1 (MGP_SPRETEiJ_G0026586) #27	Etnppl (MGP_SPRETEiJ_G0026587) #28	Ostc (MGP_SPRETEiJ_G0026588) #29	Rpl34 (MGP_SPRETEiJ_G0026589) ##30	Lef1 (MGP_SPRETEiJ_G0026590) #33	Hadh (MGP_SPRETEiJ_G0026591) #34	Cyp2u1 (MGP_SPRETEiJ_G0026592) #35	Sgms2 (MGP_SPRETEiJ_G0026593) #36	Papss1 (MGP_SPRETEiJ_G0026594) #37	Dkk2 (MGP_SPRETEiJ_G0026595)	Gimd1 (MGP_SPRETEiJ_G0026596)	Aimp1 (MGP_SPRETEiJ_G0026597)	Tbck (MGP_SPRETEiJ_G0026598)
Steppe mouse	MODERN SPECIES	3091									ENSMSIG00000030559	Egf (ENSMSIG00000030560) #16	Lrit3 (ENSMSIG00000030577) #17	Rrh (ENSMSIG00000030581) #19	Gar1 (ENSMSIG00000030600) #20	Cfi (ENSMSIG00000030603) #21	Pla2g12a (ENSMSIG00000030605)	Casp6 (ENSMSIG00000030608) #22	Mcub (ENSMSIG00000030610) #18	Sec24b (ENSMSIG00000030615) #24	Col25a1 (ENSMSIG00000030632) #27	Etnppl (ENSMSIG00000030647) #28	Ostc (ENSMSIG00000030653) #29	Rpl34 (ENSMSIG00000030659) ##30	ENSMSIG00000030662	ENSMSIG00000030668	Lef1 (ENSMSIG00000030670) #33	Hadh (ENSMSIG00000030700) #34	Cyp2u1 (ENSMSIG00000030701) #35	Sgms2 (ENSMSIG00000030706) #36	Papss1 (ENSMSIG00000030712) #37
Ryukyu mouse	MODERN SPECIES	12	Zgrf1 (MGP_CAROLIEiJ_G0025615)	Neurog2 (MGP_CAROLIEiJ_G0025616) #7	Alpk1 (MGP_CAROLIEiJ_G0025617) #9	Tifa (MGP_CAROLIEiJ_G0025618) #10	Ap1ar (MGP_CAROLIEiJ_G0025619) #11	Fam241a (MGP_CAROLIEiJ_G0025620) #12	Pitx2 (MGP_CAROLIEiJ_G0025621)	Enpep (MGP_CAROLIEiJ_G0025622) #14	Elovl6 (MGP_CAROLIEiJ_G0025623) #15	Egf (MGP_CAROLIEiJ_G0025624) #16	Lrit3 (MGP_CAROLIEiJ_G0025625) #17	Rrh (MGP_CAROLIEiJ_G0025626) #19	Gar1 (MGP_CAROLIEiJ_G0025627) #20	Cfi (MGP_CAROLIEiJ_G0025628) #21	Pla2g12a (MGP_CAROLIEiJ_G0025629)	Casp6 (MGP_CAROLIEiJ_G0025630) #22	Mcub (MGP_CAROLIEiJ_G0025631) #18	Sec24b (MGP_CAROLIEiJ_G0025632) #24	Col25a1 (MGP_CAROLIEiJ_G0025633) #27	Etnppl (MGP_CAROLIEiJ_G0025634) #28	Ostc (MGP_CAROLIEiJ_G0025635) #29	Rpl34 (MGP_CAROLIEiJ_G0025636) ##30	Lef1 (MGP_CAROLIEiJ_G0025637) #33	Hadh (MGP_CAROLIEiJ_G0025638) #34	Cyp2u1 (MGP_CAROLIEiJ_G0025639) #35	Sgms2 (MGP_CAROLIEiJ_G0025640) #36	Papss1 (MGP_CAROLIEiJ_G0025641) #37	Dkk2 (MGP_CAROLIEiJ_G0025642)	Gimd1 (MGP_CAROLIEiJ_G0025643)	Aimp1 (MGP_CAROLIEiJ_G0025644)	Tbck (MGP_CAROLIEiJ_G0025645)
Shrew mouse	MODERN SPECIES	17	Alpk1 (MGP_PahariEiJ_G0027064) #9	Tifa (MGP_PahariEiJ_G0027065) #10	Ap1ar (MGP_PahariEiJ_G0027066) #11	Fam241a (MGP_PahariEiJ_G0027067) #12	Pitx2 (MGP_PahariEiJ_G0027068)	Enpep (MGP_PahariEiJ_G0027069) #14	MGP_PahariEiJ_G0027070	MGP_PahariEiJ_G0027071	Elovl6 (MGP_PahariEiJ_G0027072) #15	Egf (MGP_PahariEiJ_G0027073) #16	Lrit3 (MGP_PahariEiJ_G0027074) #17	Rrh (MGP_PahariEiJ_G0027075) #19	Gar1 (MGP_PahariEiJ_G0027076) #20	Cfi (MGP_PahariEiJ_G0027077) #21	Pla2g12a (MGP_PahariEiJ_G0027078)	Casp6 (MGP_PahariEiJ_G0027079) #22	Mcub (MGP_PahariEiJ_G0027080) #18	Sec24b (MGP_PahariEiJ_G0027081) #24	Col25a1 (MGP_PahariEiJ_G0027082) #27	Etnppl (MGP_PahariEiJ_G0027083) #28	Ostc (MGP_PahariEiJ_G0027084) #29	Rpl34 (MGP_PahariEiJ_G0027085) #30	Lef1 (MGP_PahariEiJ_G0027086) #33	Hadh (MGP_PahariEiJ_G0027087) #34	Cyp2u1 (MGP_PahariEiJ_G0027088) #35	Sgms2 (MGP_PahariEiJ_G0027089) #36	Papss1 (MGP_PahariEiJ_G0027090) #37	Dkk2 (MGP_PahariEiJ_G0027091)	Gimd1 (MGP_PahariEiJ_G0027092)	Aimp1 (MGP_PahariEiJ_G0027093)	Tbck (MGP_PahariEiJ_G0027094)
Rat	MODERN SPECIES	11	Tifa (ENSRNOG00000010941) #10	Ap1ar (ENSRNOG00000024492) #11	Fam241a (ENSRNOG00000010875) #12	LOC108350287 (ENSRNOG00000062474)	Pitx2 (ENSRNOG00000010681)	Enpep (ENSRNOG00000051854) #14	Dcm5 (ENSRNOG00000048459)	AABR07034008.1 (ENSRNOG00000001601)	Elovl6 (ENSRNOG00000048949) #15	Egf (ENSRNOG00000053979) #16	Lrit3 (ENSRNOG00000061097) #17	Rrh (ENSRNOG00000053349) #19	Gar1 (ENSRNOG00000061146) #20	Cfi (ENSRNOG00000053400) #21	Pla2g12a (ENSRNOG00000057470)	Casp6 (ENSRNOG00000052613) #22	Mcub (ENSRNOG00000009433) #18	Sec24b (ENSRNOG00000023373) #24	Col25a1 (ENSRNOG00000050706) #27	Etnppl (ENSRNOG00000045743) #28	Ostc (ENSRNOG00000023322) #29	Rpl34 (ENSRNOG00000016387) #30	LOC108350290 (ENSRNOG00000069431)	AABR07013412.1 (ENSRNOG00000055035)	Lef1 (ENSRNOG00000010121) #33	Hadh (ENSRNOG00000010697) #34	Cyp2u1 (ENSRNOG00000011053) #35	Sgms2 (ENSRNOG00000011284) #36	Papss1 (ENSRNOG00000011311) #37	Dkk2 (ENSRNOG00000011360)	ENSRNOG00000066474
Upper Galilee mountains blind mole rat	MODERN SPECIES	465								ENSNGAG00000019288	Elovl6 (ENSNGAG00000023846) #15	ENSNGAG00000024138	Lrit3 (ENSNGAG00000002073) #17	Gar1 (ENSNGAG00000008268) #20	Cfi (ENSNGAG00000012073) #21	ENSNGAG00000019057	Pla2g12a (ENSNGAG00000019864)	Casp6 (ENSNGAG00000021834) #22	Mcub (ENSNGAG00000022593) #18	Sec24b (ENSNGAG00000023895) #24	Col25a1 (ENSNGAG00000001308) #27	Etnppl (ENSNGAG00000019931) #28	Ostc (ENSNGAG00000004125) #29	ENSNGAG00000021739 ##30	Lef1 (ENSNGAG00000022789) #33	Hadh (ENSNGAG00000023972) #34	Cyp2u1 (ENSNGAG00000024149) #35	Sgms2 (ENSNGAG00000000978) #36
Lesser Egyptian jerboa	MODERN SPECIES	67	Neurog2 (ENSJJAG00000000627) #7	Alpk1 (ENSJJAG00000012764) #9	ENSJJAG00000006863	Tifa (ENSJJAG00000014646) #10	Ap1ar (ENSJJAG00000021104) #11	Fam241a (ENSJJAG00000020356) #12	ENSJJAG00000018533 #13	Enpep (ENSJJAG00000012504) #14	Elovl6 (ENSJJAG00000015160) #15	Egf (ENSJJAG00000010062) #16	Lrit3 (ENSJJAG00000017146) #17	Rrh (ENSJJAG00000015448) #19	Gar1 (ENSJJAG00000010063) #20	Cfi (ENSJJAG00000008398) #21	ENSJJAG00000002887	Casp6 (ENSJJAG00000021538) #22	Mcub (ENSJJAG00000020581) #18	Sec24b (ENSJJAG00000020289) #24
Kangaroo rat	MODERN SPECIES	389	ENSDORG00000029578	Neurog2 (ENSDORG00000026770) #7	Alpk1 (ENSDORG00000012751) #9	Tifa (ENSDORG00000028757) #10	ENSDORG00000025544	ENSDORG00000029098 #12	ENSDORG00000002323 #13	Enpep (ENSDORG00000016065) #14	Elovl6 (ENSDORG00000029654) #15	ENSDORG00000000490 #16	Lrit3 (ENSDORG00000027458) #17	Rrh (ENSDORG00000000486) #19	Gar1 (ENSDORG00000000482) #20	Cfi (ENSDORG00000011881) #21	Pla2g12a (ENSDORG00000011877)	Casp6 (ENSDORG00000012993) #22	Mcub (ENSDORG00000012992) #18	Sec24b (ENSDORG00000003039) #24	ENSDORG00000024600	Col25a1 (ENSDORG00000004118) #27	Etnppl (ENSDORG00000004115) #28	Ostc (ENSDORG00000027386) #29	Rpl34 (ENSDORG00000025054) #30	Lef1 (ENSDORG00000007694) #33	Hadh (ENSDORG00000015829) #34	Cyp2u1 (ENSDORG00000010109) #35	Sgms2 (ENSDORG00000010107) #36	Papss1 (ENSDORG00000010043) #37	Dkk2 (ENSDORG00000025181)	Gimd1 (ENSDORG00000026034)	ENSDORG00000005018
Tree shrew	MODERN SPECIES	1884																CASP6 (ENSTBEG00000017037) #22
Primates	ANCESTRAL SPECIES	10	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000159753 #9	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00940000159753 #9	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k.a	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Hominidae	ANCESTRAL SPECIES	12	ENSGT00940000159753 #9	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k.a	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000159753 #9	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k.a	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Gorilla	MODERN SPECIES	17	ALPK1 (ENSGGOG00000006662) #9	RTEL1 (ENSGGOG00000042405)	TIFA (ENSGGOG00000041642) #10	AP1AR (ENSGGOG00000009698) #11	FAM241A (ENSGGOG00000023800) #12	ENSGGOG00000043708	PITX2 (ENSGGOG00000008770) #13	ENPEP (ENSGGOG00000007393) #14	ELOVL6 (ENSGGOG00000000221) #15	EGF (ENSGGOG00000005808) #16	LRIT3 (ENSGGOG00000001382) #17	RRH (ENSGGOG00000026289) #19	GAR1 (ENSGGOG00000008681) #20	CFI (ENSGGOG00000003371) #21	PLA2G12A (ENSGGOG00000044178)	CASP6 (ENSGGOG00000026344) #22	ENSGGOG00000038002	ENSGGOG00000041678 #18	SEC24B (ENSGGOG00000006806) #24	COL25A1 (ENSGGOG00000005574) #27	ETNPPL (ENSGGOG00000012323) #28	ENSGGOG00000026873 #29	ENSGGOG00000007650 ##30	LEF1 (ENSGGOG00000010692) #33	ENSGGOG00000004423 #34	CYP2U1 (ENSGGOG00000014716) #35	SGMS2 (ENSGGOG00000012598) #36	PAPSS1 (ENSGGOG00000014736) #37	ENSGGOG00000011380	DKK2 (ENSGGOG00000027525)	GIMD1 (ENSGGOG00000024079)
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000159753 #9	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k.a	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Pan	ANCESTRAL SPECIES	7	ENSGT00940000159753 #9	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k.a	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00940000154891.h	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188
Chimpanzee	MODERN SPECIES	17	ALPK1 (ENSPTRG00000016375) #9	ENSPTRG00000048787	TIFA (ENSPTRG00000052432) #10	AP1AR (ENSPTRG00000052840) #11	FAM241A (ENSPTRG00000016372) #12	ENSPTRG00000052737	PITX2 (ENSPTRG00000016371) #13	ENPEP (ENSPTRG00000016370) #14	ELOVL6 (ENSPTRG00000016368) #15	EGF (ENSPTRG00000016367) #16	LRIT3 (ENSPTRG00000016366) #17	RRH (ENSPTRG00000016365) #19	GAR1 (ENSPTRG00000016364) #20	CFI (ENSPTRG00000031127) #21	PLA2G12A (ENSPTRG00000044543)	CASP6 (ENSPTRG00000046752) #22	ENSPTRG00000050870	MCUB (ENSPTRG00000016360) #18	ENSPTRG00000043489	SEC24B (ENSPTRG00000016359) #24	ENSPTRG00000052216	COL25A1 (ENSPTRG00000016356) #27	ETNPPL (ENSPTRG00000016355) #28	OSTC (ENSPTRG00000024222) #29	RPL34 (ENSPTRG00000016353) #30	LEF1 (ENSPTRG00000016352) #33	HADH (ENSPTRG00000016351) #34	CYP2U1 (ENSPTRG00000016349) #35	SGMS2 (ENSPTRG00000048675) #36	PAPSS1 (ENSPTRG00000016347) #37	ENSPTRG00000040502
Bonobo	MODERN SPECIES	17	ALPK1 (ENSPPAG00000020703) #9	ENSPPAG00000033509	ENSPPAG00000002777 #10	AP1AR (ENSPPAG00000029027) #11	ENSPPAG00000006440 #12	ENSPPAG00000023243	ENSPPAG00000040833 #13	ENPEP (ENSPPAG00000031975) #14	ELOVL6 (ENSPPAG00000033763) #15	EGF (ENSPPAG00000001225) #16	LRIT3 (ENSPPAG00000043621) #17	RRH (ENSPPAG00000041672) #19	GAR1 (ENSPPAG00000014081) #20	CFI (ENSPPAG00000039592) #21	PLA2G12A (ENSPPAG00000029221)	CASP6 (ENSPPAG00000036967) #22	MCUB (ENSPPAG00000029717) #18	ENSPPAG00000033317	SEC24B (ENSPPAG00000037815) #24	ENSPPAG00000034006	COL25A1 (ENSPPAG00000027300) #27	ETNPPL (ENSPPAG00000031593) #28	ENSPPAG00000043858 #29	ENSPPAG00000036097 #30	LEF1 (ENSPPAG00000042910) #33	ENSPPAG00000034253 #34	CYP2U1 (ENSPPAG00000043345) #35	SGMS2 (ENSPPAG00000041148) #36	PAPSS1 (ENSPPAG00000031578) #37	ENSPPAG00000042562	DKK2 (ENSPPAG00000038306)
Human	MODERN SPECIES	16	NEUROG2 (ENSG00000178403) #7	ALPK1 (ENSG00000073331) #9	TIFA (ENSG00000145365) #10	AP1AR (ENSG00000138660) #11	FAM241A (ENSG00000174749) #12	PITX2 (ENSG00000164093) #13	ENPEP (ENSG00000138792) #14	ELOVL6 (ENSG00000170522) #15	EGF (ENSG00000138798) #16	LRIT3 (ENSG00000183423) #17	RRH (ENSG00000180245) #19	GAR1 (ENSG00000109534) #20	CFI (ENSG00000205403) #21	ENSG00000285330	PLA2G12A (ENSG00000123739)	CASP6 (ENSG00000138794) #22	MCUB (ENSG00000005059) #18	SEC24B (ENSG00000138802) #24	COL25A1 (ENSG00000188517) #27	ETNPPL (ENSG00000164089) #28	OSTC (ENSG00000198856) #29	RPL34 (ENSG00000109475) ##30	LEF1 (ENSG00000138795) #33	HADH (ENSG00000138796) #34	CYP2U1 (ENSG00000155016) #35	SGMS2 (ENSG00000164023) #36	PAPSS1 (ENSG00000138801) #37	DKK2 (ENSG00000155011)	GIMD1 (ENSG00000250298)	AIMP1 (ENSG00000164022)	TBCK (ENSG00000145348)
Orangutan	MODERN SPECIES	17	ALPK1 (ENSPPYG00000015007) #9	TIFA (ENSPPYG00000015006) #10	AP1AR (ENSPPYG00000015005) #11	FAM241A (ENSPPYG00000033722) #12	PITX2 (ENSPPYG00000039098) #13	ENPEP (ENSPPYG00000015002) #14	ENSPPYG00000036202	ENSPPYG00000015001	ELOVL6 (ENSPPYG00000037332) #15	EGF (ENSPPYG00000014999) #16	LRIT3 (ENSPPYG00000014998) #17	RRH (ENSPPYG00000014997) #19	GAR1 (ENSPPYG00000014996) #20	CFI (ENSPPYG00000014995) #21	PLA2G12A (ENSPPYG00000014994)	CASP6 (ENSPPYG00000014993) #22	MCUB (ENSPPYG00000037615) #18	SEC24B (ENSPPYG00000029772) #24	ENSPPYG00000039944	COL25A1 (ENSPPYG00000014990) #27	ETNPPL (ENSPPYG00000014989) #28	ENSPPYG00000030600 #29	ENSPPYG00000014988 ##30	ENSPPYG00000032263	LEF1 (ENSPPYG00000014987) #33	ENSPPYG00000014986 #34	CYP2U1 (ENSPPYG00000014985) #35	SGMS2 (ENSPPYG00000014984) #36	PAPSS1 (ENSPPYG00000014983) #37	DKK2 (ENSPPYG00000014982)	GIMD1 (ENSPPYG00000035934)
Gibbon	MODERN SPECIES	8	ALPK1 (ENSNLEG00000016426) #9	TIFA (ENSNLEG00000027987) #10	AP1AR (ENSNLEG00000027136) #11	FAM241A (ENSNLEG00000016462) #12	ENSNLEG00000030659	ENSNLEG00000016466 #13	ENPEP (ENSNLEG00000016485) #14	ENSNLEG00000016531	ELOVL6 (ENSNLEG00000016533) #15	EGF (ENSNLEG00000016536) #16	LRIT3 (ENSNLEG00000016566) #17	RRH (ENSNLEG00000016572) #19	GAR1 (ENSNLEG00000016578) #20	CFI (ENSNLEG00000016589) #21	PLA2G12A (ENSNLEG00000028075)	CASP6 (ENSNLEG00000016591) #22	ENSNLEG00000030235	MCUB (ENSNLEG00000016592) #18	SEC24B (ENSNLEG00000016603) #24	ENSNLEG00000032374	ENSNLEG00000034088	KIAA1217 (ENSNLEG00000016638)	ARHGAP21 (ENSNLEG00000016714)	PRTFDC1 (ENSNLEG00000016746)	THNSL1 (ENSNLEG00000016757)	ENKUR (ENSNLEG00000016751)	GPR158 (ENSNLEG00000016759)	MYO3A (ENSNLEG00000016768)	GAD2 (ENSNLEG00000016794)	APBB1IP (ENSNLEG00000016823)	PDSS1 (ENSNLEG00000016836)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.e.b.a.b.b ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Vervet Monkey	MODERN SPECIES	26	ALPK1 (ENSCSAG00000003833) #9	TIFA (ENSCSAG00000000401) #10	AP1AR (ENSCSAG00000003837) #11	FAM241A (ENSCSAG00000003838) #12	ENSCSAG00000003841	PITX2 (ENSCSAG00000003844) #13	ENPEP (ENSCSAG00000003888) #14	ELOVL6 (ENSCSAG00000003910) #15	ENSCSAG00000000402	EGF (ENSCSAG00000003916) #16	LRIT3 (ENSCSAG00000003918) #17	RRH (ENSCSAG00000003920) #19	GAR1 (ENSCSAG00000003922) #20	CFI (ENSCSAG00000003926) #21	PLA2G12A (ENSCSAG00000003928)	CASP6 (ENSCSAG00000003933) #22	MCUB (ENSCSAG00000003935) #18	SEC24B (ENSCSAG00000003940) #24	COL25A1 (ENSCSAG00000003955) #27	ETNPPL (ENSCSAG00000003965) #28	LEF1 (ENSCSAG00000003970) #33	HADH (ENSCSAG00000003972) #34	CYP2U1 (ENSCSAG00000003974) #35	SGMS2 (ENSCSAG00000003975) #36	ENSCSAG00000000403	PAPSS1 (ENSCSAG00000003977) #37	DKK2 (ENSCSAG00000003978)	GIMD1 (ENSCSAG00000003981)	AIMP1 (ENSCSAG00000003982)	TBCK (ENSCSAG00000003984)	NPNT (ENSCSAG00000003989)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.a.a	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Macaca	ANCESTRAL SPECIES	18	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.a.a	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870	ENSGT00940000162188	ENSGT00530000069080
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000154888.i.a.b	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00550000074801.h.c.b.b	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.a.a	ENSGT00940000159823 #27	ENSGT00940000166143.A.a.a.a.a	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.e.b.a.b.a.b ##30	ENSGT01030000240089	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164870
Crab-eating macaque	MODERN SPECIES	15	ENSMFAG00000002220	ALPK1 (ENSMFAG00000035373) #9	TIFA (ENSMFAG00000029908) #10	AP1AR (ENSMFAG00000064871) #11	FAM241A (ENSMFAG00000000675) #12	ENSMFAG00000037821	PITX2 (ENSMFAG00000002699) #13	ENPEP (ENSMFAG00000043564) #14	ELOVL6 (ENSMFAG00000064437) #15	ENSMFAG00000055935	EGF (ENSMFAG00000003730) #16	LRIT3 (ENSMFAG00000033675) #17	RRH (ENSMFAG00000006731) #19	GAR1 (ENSMFAG00000024592) #20	CFI (ENSMFAG00000032258) #21	CASP6 (ENSMFAG00000034038) #22	MCUB (ENSMFAG00000031082) #18	SEC24B (ENSMFAG00000038799) #24	ENSMFAG00000031126	ENSMFAG00000060894	COL25A1 (ENSMFAG00000031895) #27	ENSMFAG00000062873	ETNPPL (ENSMFAG00000031575) #28	ENSMFAG00000034553 #29	ENSMFAG00000034368 #30	ENSMFAG00000062885	LEF1 (ENSMFAG00000037201) #33	ENSMFAG00000002923	HADH (ENSMFAG00000033488) #34	CYP2U1 (ENSMFAG00000003841) #35	SGMS2 (ENSMFAG00000041579) #36
Rhesus	MODERN SPECIES	15	ALPK1 (ENSMMUG00000014073) #9	TIFA (ENSMMUG00000015589) #10	AP1AR (ENSMMUG00000065026) #11	FAM241A (ENSMMUG00000050382) #12	ENSMMUG00000040183	ENSMMUG00000053509	PITX2 (ENSMMUG00000011322) #13	ENPEP (ENSMMUG00000005517) #14	ELOVL6 (ENSMMUG00000050694) #15	ENSMMUG00000010044	EGF (ENSMMUG00000010043) #16	LRIT3 (ENSMMUG00000022956) #17	RRH (ENSMMUG00000021223) #19	GAR1 (ENSMMUG00000021225) #20	CFI (ENSMMUG00000021226) #21	CASP6 (ENSMMUG00000008174) #22	MCUB (ENSMMUG00000052933) #18	SEC24B (ENSMMUG00000023240) #24	COL25A1 (ENSMMUG00000017703) #27	ENSMMUG00000051110	ETNPPL (ENSMMUG00000011903) #28	OSTC (ENSMMUG00000011902) #29	RPL34 (ENSMMUG00000052609) ##30	ENSMMUG00000060432	ENSMMUG00000009066	LEF1 (ENSMMUG00000023256) #33	HADH (ENSMMUG00000023254) #34	CYP2U1 (ENSMMUG00000058349) #35	SGMS2 (ENSMMUG00000017834) #36	PAPSS1 (ENSMMUG00000019907) #37	ENSMMUG00000058075
Pig-tailed macaque	MODERN SPECIES	126	TIFA (ENSMNEG00000018769) #10	AP1AR (ENSMNEG00000033623) #11	FAM241A (ENSMNEG00000036860) #12	ENSMNEG00000038407	ENSMNEG00000044225	PITX2 (ENSMNEG00000037961) #13	ENPEP (ENSMNEG00000032569) #14	ELOVL6 (ENSMNEG00000042798) #15	ENSMNEG00000044470	EGF (ENSMNEG00000033504) #16	LRIT3 (ENSMNEG00000044383) #17	RRH (ENSMNEG00000041255) #19	GAR1 (ENSMNEG00000042594) #20	CFI (ENSMNEG00000033022) #21	PLA2G12A (ENSMNEG00000035471)	CASP6 (ENSMNEG00000028940) #22	MCUB (ENSMNEG00000044864) #18	SEC24B (ENSMNEG00000039207) #24	ENSMNEG00000040914	COL25A1 (ENSMNEG00000032070) #27	ETNPPL (ENSMNEG00000040127) #28	ENSMNEG00000030618 #29	ENSMNEG00000042248 ##30	LEF1 (ENSMNEG00000043505) #33	HADH (ENSMNEG00000031684) #34	CYP2U1 (ENSMNEG00000030586) #35	SGMS2 (ENSMNEG00000034744) #36	PAPSS1 (ENSMNEG00000030623) #37	ENSMNEG00000044748	ENSMNEG00000037880	DKK2 (ENSMNEG00000034817)
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00950000182970.A.b.d.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.a.a	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Olive baboon	MODERN SPECIES	13	ALPK1 (ENSPANG00000012403) #9	TIFA (ENSPANG00000020833) #10	AP1AR (ENSPANG00000034888) #11	FAM241A (ENSPANG00000024713) #12	ENSPANG00000050525	ENSPANG00000034148	PITX2 (ENSPANG00000025865) #13	ENPEP (ENSPANG00000004936) #14	ELOVL6 (ENSPANG00000009911) #15	EGF (ENSPANG00000006015) #16	ENSPANG00000002291	LRIT3 (ENSPANG00000018827) #17	GAR1 (ENSPANG00000000639) #20	CFI (ENSPANG00000019215) #21	PLA2G12A (ENSPANG00000035993)	CASP6 (ENSPANG00000020178) #22	SEC24B (ENSPANG00000018888) #24	COL25A1 (ENSPANG00000007137) #27	ETNPPL (ENSPANG00000026027) #28	ENSPANG00000016693 #29	ENSPANG00000030212 #30	LEF1 (ENSPANG00000020598) #33	HADH (ENSPANG00000009529) #34	CYP2U1 (ENSPANG00000011417) #35	SGMS2 (ENSPANG00000024436) #36	PAPSS1 (ENSPANG00000015660) #37	DKK2 (ENSPANG00000040092)	GIMD1 (ENSPANG00000046883)	AIMP1 (ENSPANG00000024758)	ENSPANG00000051168	TBCK (ENSPANG00000010441)
Cercopithecinae_d	ANCESTRAL SPECIES	62	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT00670000098076.i.a.b.h.a	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.a.a	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Drill	MODERN SPECIES	1697							ENSMLEG00000031159	ENSMLEG00000026749	ELOVL6 (ENSMLEG00000030895) #15	EGF (ENSMLEG00000025756) #16	LRIT3 (ENSMLEG00000014713) #17	RRH (ENSMLEG00000012030) #19	GAR1 (ENSMLEG00000002496) #20	CFI (ENSMLEG00000029126) #21	PLA2G12A (ENSMLEG00000028575)	CASP6 (ENSMLEG00000028190) #22	MCUB (ENSMLEG00000027729) #18
Sooty mangabey	MODERN SPECIES	348	TIFA (ENSCATG00000003075) #10	AP1AR (ENSCATG00000029032) #11	FAM241A (ENSCATG00000015786) #12	ENSCATG00000034490	PITX2 (ENSCATG00000024726) #13	ENPEP (ENSCATG00000035878) #14	ENSCATG00000039213	ELOVL6 (ENSCATG00000043507) #15	ENSCATG00000045152	EGF (ENSCATG00000041287) #16	LRIT3 (ENSCATG00000040147) #17	RRH (ENSCATG00000029911) #19	GAR1 (ENSCATG00000021854) #20	CFI (ENSCATG00000036463) #21	PLA2G12A (ENSCATG00000037790)	CASP6 (ENSCATG00000033766) #22	MCUB (ENSCATG00000033302) #18	SEC24B (ENSCATG00000032434) #24	ENSCATG00000031369	COL25A1 (ENSCATG00000031315) #27	ETNPPL (ENSCATG00000032306) #28	ENSCATG00000035272 #29	ENSCATG00000042942 ##30	LEF1 (ENSCATG00000035015) #33	HADH (ENSCATG00000040474) #34	CYP2U1 (ENSCATG00000035461) #35	SGMS2 (ENSCATG00000044120) #36	PAPSS1 (ENSCATG00000028277) #37	ENSCATG00000043463	DKK2 (ENSCATG00000042474)	GIMD1 (ENSCATG00000039819)
Rhinopithecus	ANCESTRAL SPECIES	361					ENSGT00940000154185.k	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00390000012692.e	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.a.a
Black snub-nosed monkey	MODERN SPECIES	1008					ENSRBIG00000039035	PITX2 (ENSRBIG00000043361) #13	ENPEP (ENSRBIG00000036778) #14	ELOVL6 (ENSRBIG00000036979) #15	ENSRBIG00000003999	EGF (ENSRBIG00000032230) #16	LRIT3 (ENSRBIG00000040302) #17	RRH (ENSRBIG00000029724) #19	GAR1 (ENSRBIG00000019547) #20	CFI (ENSRBIG00000028487) #21	PLA2G12A (ENSRBIG00000034405)	CASP6 (ENSRBIG00000028777) #22	MCUB (ENSRBIG00000042368) #18	SEC24B (ENSRBIG00000038185) #24	ENSRBIG00000025107
Golden snub-nosed monkey	MODERN SPECIES	1861																CASP6 (ENSRROG00000028182) #22	MCUB (ENSRROG00000032857) #18
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000155140.m #22
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000155140.m #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000155140.m #22
Capuchin	MODERN SPECIES	258	SELENOM (ENSCCAG00000028421)	INPP5J (ENSCCAG00000031908)	PLA2G3 (ENSCCAG00000036152)	RNF185 (ENSCCAG00000028491)	LIMK2 (ENSCCAG00000031669)	PIK3IP1 (ENSCCAG00000022509)	PATZ1 (ENSCCAG00000028772)	ENSCCAG00000025302	ENSCCAG00000029376	EIF4ENIF1 (ENSCCAG00000017419)	SFI1 (ENSCCAG00000028846)	PISD (ENSCCAG00000035028)	ENSCCAG00000020448	PRR14L (ENSCCAG00000035447)	ENSCCAG00000005199	ENSCCAG00000027233 #22	DEPDC5 (ENSCCAG00000027743)	ENSCCAG00000025721	SLC5A1 (ENSCCAG00000025914)	AP1B1 (ENSCCAG00000037926)	RASL10A (ENSCCAG00000027259)	GAS2L1 (ENSCCAG00000033240)	EWSR1 (ENSCCAG00000035490)	RHBDD3 (ENSCCAG00000017273)	EMID1 (ENSCCAG00000033730)	KREMEN1 (ENSCCAG00000037516)	C22orf31 (ENSCCAG00000037887)	ZNRF3 (ENSCCAG00000034406)	XBP1 (ENSCCAG00000028909)	CCDC117 (ENSCCAG00000035963)
Bolivian squirrel monkey	MODERN SPECIES	280																ENSSBOG00000025375 #22	DEPDC5 (ENSSBOG00000022689)	YWHAH (ENSSBOG00000024158)	SLC5A1 (ENSSBOG00000029749)	SLC5A4 (ENSSBOG00000021753)
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000162642	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140.n #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000162642	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140.n #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Marmoset	MODERN SPECIES	15	ENSCJAG00000003822	ENSCJAG00000060028	PITX2 (ENSCJAG00000003830) #13	ENPEP (ENSCJAG00000003856) #14	ENSCJAG00000074022	ENSCJAG00000071394	ELOVL6 (ENSCJAG00000038180) #15	ENSCJAG00000063162	ENSCJAG00000078793	EGF (ENSCJAG00000003982) #16	LRIT3 (ENSCJAG00000004015) #17	RRH (ENSCJAG00000004028) #19	GAR1 (ENSCJAG00000082261) #20	CFI (ENSCJAG00000004249) #21	PLA2G12A (ENSCJAG00000085363)	CASP6 (ENSCJAG00000016170) #22	MCUB (ENSCJAG00000016158) #18	SEC24B (ENSCJAG00000016082) #24	COL25A1 (ENSCJAG00000016026) #27	ENSCJAG00000066361	ETNPPL (ENSCJAG00000016009) #28	ENSCJAG00000080504 #29	ENSCJAG00000053141 ##30	ENSCJAG00000070564	ENSCJAG00000086893	LEF1 (ENSCJAG00000015947) #33	ENSCJAG00000082049	CYP2U1 (ENSCJAG00000019545) #35	HADH (ENSCJAG00000015938) #34	ENSCJAG00000052711	SGMS2 (ENSCJAG00000015928) #36
Cebidae_a	ANCESTRAL SPECIES	21	ENSGT00940000154949.b.s	ENSGT00940000162642	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b.k #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.i #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140.n #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000153425.a.a.a.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.ab.b.b #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080
Bolivian squirrel monkey	MODERN SPECIES	75	ENSSBOG00000030886	ZGRF1 (ENSSBOG00000022278)	NEUROG2 (ENSSBOG00000019499) #7	ALPK1 (ENSSBOG00000031417) #9	AP1AR (ENSSBOG00000024931) #11	ENSSBOG00000016491 #12	PITX2 (ENSSBOG00000026969) #13	ENPEP (ENSSBOG00000031560) #14	ELOVL6 (ENSSBOG00000002551) #15	EGF (ENSSBOG00000034428) #16	LRIT3 (ENSSBOG00000022516) #17	RRH (ENSSBOG00000003103) #19	GAR1 (ENSSBOG00000024785) #20	CFI (ENSSBOG00000035545) #21	PLA2G12A (ENSSBOG00000006929)	ENSSBOG00000025797 #22	MCUB (ENSSBOG00000026239) #18	SEC24B (ENSSBOG00000032106) #24	ENSSBOG00000024883	COL25A1 (ENSSBOG00000025557) #27	ENSSBOG00000035051	ETNPPL (ENSSBOG00000036171) #28	ENSSBOG00000036162 #29	ENSSBOG00000033335	ENSSBOG00000026498 #30	LEF1 (ENSSBOG00000028826) #33	HADH (ENSSBOG00000021987) #34	ENSSBOG00000015235	CYP2U1 (ENSSBOG00000030554) #35	SGMS2 (ENSSBOG00000025320) #36	PAPSS1 (ENSSBOG00000002114) #37
Capuchin	MODERN SPECIES	17	FAM241A (ENSCCAG00000018991) #12	ENSCCAG00000034929	ENSCCAG00000033747	ENSCCAG00000026848	PITX2 (ENSCCAG00000026914) #13	ENPEP (ENSCCAG00000026144) #14	ENSCCAG00000021722	ENSCCAG00000024902	ELOVL6 (ENSCCAG00000037435) #15	EGF (ENSCCAG00000036796) #16	LRIT3 (ENSCCAG00000024280) #17	RRH (ENSCCAG00000029898) #19	GAR1 (ENSCCAG00000029372) #20	CFI (ENSCCAG00000024914) #21	PLA2G12A (ENSCCAG00000006887)	ENSCCAG00000032565 #22	MCUB (ENSCCAG00000025789) #18	SEC24B (ENSCCAG00000005066) #24	EIF3L (ENSCCAG00000034054)	COL25A1 (ENSCCAG00000027492) #27	ETNPPL (ENSCCAG00000030276) #28	OSTC (ENSCCAG00000023668) #29	ENSCCAG00000026254 ##30	LEF1 (ENSCCAG00000023501) #33	HADH (ENSCCAG00000036897) #34	CYP2U1 (ENSCCAG00000026790) #35	SGMS2 (ENSCCAG00000030558) #36	PAPSS1 (ENSCCAG00000028083) #37	DKK2 (ENSCCAG00000034380)	ENSCCAG00000002308	GIMD1 (ENSCCAG00000008247)
Mas night monkey	MODERN SPECIES	922	ZGRF1 (ENSANAG00000025085)	NEUROG2 (ENSANAG00000011779) #7	ALPK1 (ENSANAG00000031430) #9	AP1AR (ENSANAG00000029345) #11	FAM241A (ENSANAG00000028321) #12	ENSANAG00000032606	PITX2 (ENSANAG00000034020) #13	ENPEP (ENSANAG00000038131) #14	ELOVL6 (ENSANAG00000032593) #15	EGF (ENSANAG00000027983) #16	LRIT3 (ENSANAG00000020446) #17	RRH (ENSANAG00000023867) #19	GAR1 (ENSANAG00000021608) #20	CFI (ENSANAG00000024666) #21	PLA2G12A (ENSANAG00000032035)	CASP6 (ENSANAG00000027635) #22	ENSANAG00000035982 ##31	ENSANAG00000027362 #18	SEC24B (ENSANAG00000030045) #24	COL25A1 (ENSANAG00000019852) #27	ETNPPL (ENSANAG00000020605) #28	ENSANAG00000024765 #29	ENSANAG00000026768 #30	LEF1 (ENSANAG00000031040) #33	HADH (ENSANAG00000024891) #34	CYP2U1 (ENSANAG00000021010) #35	SGMS2 (ENSANAG00000031769) #36	PAPSS1 (ENSANAG00000030435) #37	DKK2 (ENSANAG00000036052)	GIMD1 (ENSANAG00000034671)	AIMP1 (ENSANAG00000033416)
Tarsier	MODERN SPECIES	7333																CASP6 (ENSTSYG00000005805) #22	MCUB (ENSTSYG00000005775) #18	SEC24B (ENSTSYG00000001313) #24
Strepsirrhini	ANCESTRAL SPECIES	18	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Lemuriformes_a	ANCESTRAL SPECIES	108	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Coquerels sifaka	MODERN SPECIES	612	LARP7 (ENSPCOG00000023946)	ENSPCOG00000019293	ENSPCOG00000019840	ALPK1 (ENSPCOG00000024686) #9	AP1AR (ENSPCOG00000021453) #11	FAM241A (ENSPCOG00000015336) #12	PITX2 (ENSPCOG00000022739) #13	ENPEP (ENSPCOG00000023964) #14	ENSPCOG00000010114	ELOVL6 (ENSPCOG00000017024) #15	EGF (ENSPCOG00000019019) #16	LRIT3 (ENSPCOG00000023561) #17	GAR1 (ENSPCOG00000027049) #20	ENSPCOG00000015799 #21	ENSPCOG00000025332	CASP6 (ENSPCOG00000017154) #22	MCUB (ENSPCOG00000021218) #18	SEC24B (ENSPCOG00000015907) #24	COL25A1 (ENSPCOG00000016653) #27	ETNPPL (ENSPCOG00000007840) #28	OSTC (ENSPCOG00000014109) #29	ENSPCOG00000010384 #30	LEF1 (ENSPCOG00000012815) #33	HADH (ENSPCOG00000010610) #34	CYP2U1 (ENSPCOG00000027221) #35	SGMS2 (ENSPCOG00000002586) #36	PAPSS1 (ENSPCOG00000022421) #37	DKK2 (ENSPCOG00000016835)	GIMD1 (ENSPCOG00000012757)	AIMP1 (ENSPCOG00000001426)	TBCK (ENSPCOG00000017320)
Greater bamboo lemur	MODERN SPECIES	41							PITX2 (ENSPSMG00000010083) #13	ENPEP (ENSPSMG00000009877) #14	ELOVL6 (ENSPSMG00000009746) #15	EGF (ENSPSMG00000009712) #16	LRIT3 (ENSPSMG00000009629) #17	RRH (ENSPSMG00000009623) #19	GAR1 (ENSPSMG00000009612) #20	ENSPSMG00000009600 #21	PLA2G12A (ENSPSMG00000009589)	CASP6 (ENSPSMG00000009580) #22	MCUB (ENSPSMG00000009554) #18	SEC24B (ENSPSMG00000009514) #24	ETNPPL (ENSPSMG00000009391) #28	COL25A1 (ENSPSMG00000009240) #27	OSTC (ENSPSMG00000009069) #29	ENSPSMG00000009043 ##30	LEF1 (ENSPSMG00000009019) #33	HADH (ENSPSMG00000008870) #34	CYP2U1 (ENSPSMG00000008757) #35	ENSPSMG00000008741 #36	PAPSS1 (ENSPSMG00000008731) #37	DKK2 (ENSPSMG00000008696)	AIMP1 (ENSPSMG00000008692)	TBCK (ENSPSMG00000008659)	NPNT (ENSPSMG00000008414)
Mouse lemur	MODERN SPECIES	20	TPM4 (ENSMICG00000036790)	RAB8A (ENSMICG00000035390)	HSH2D (ENSMICG00000045419)	ALPK1 (ENSMICG00000003431) #9	AP1AR (ENSMICG00000041446) #11	FAM241A (ENSMICG00000048071) #12	PITX2 (ENSMICG00000002070) #13	ENPEP (ENSMICG00000042642) #14	ENSMICG00000045345	ELOVL6 (ENSMICG00000045952) #15	LRIT3 (ENSMICG00000036410) #17	RRH (ENSMICG00000038685) #19	GAR1 (ENSMICG00000003326) #20	CFI (ENSMICG00000003323) #21	PLA2G12A (ENSMICG00000010304)	CASP6 (ENSMICG00000010297) #22	ENSMICG00000037926 #18	SEC24B (ENSMICG00000010277) #24	ENSMICG00000036525	COL25A1 (ENSMICG00000002737) #27	ENSMICG00000037629	ENSMICG00000002187 #28	OSTC (ENSMICG00000002182) #29	ENSMICG00000041882 ##30	LEF1 (ENSMICG00000012833) #33	HADH (ENSMICG00000012822) #34	CYP2U1 (ENSMICG00000012817) #35	SGMS2 (ENSMICG00000008740) #36	PAPSS1 (ENSMICG00000016262) #37	ENSMICG00000017692	DKK2 (ENSMICG00000027157)
Bushbaby	MODERN SPECIES	244	NEUROG2 (ENSOGAG00000029479) #7	ALPK1 (ENSOGAG00000001634) #9	TIFA (ENSOGAG00000001633) #10	AP1AR (ENSOGAG00000001631) #11	FAM241A (ENSOGAG00000008435) #12	PITX2 (ENSOGAG00000029102) #13	ENPEP (ENSOGAG00000004273) #14	ELOVL6 (ENSOGAG00000004708) #15	EGF (ENSOGAG00000004702) #16	LRIT3 (ENSOGAG00000032858) #17	RRH (ENSOGAG00000004696) #19	GAR1 (ENSOGAG00000004693) #20	CFI (ENSOGAG00000004690) #21	PLA2G12A (ENSOGAG00000004686)	ENSOGAG00000016710	CASP6 (ENSOGAG00000004685) #22	MCUB (ENSOGAG00000004683) #18	SEC24B (ENSOGAG00000010021) #24
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000169429
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.a ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Suina	ANCESTRAL SPECIES	22	ENSGT00940000162642	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Chacoan peccary	MODERN SPECIES	118	ZGRF1 (ENSCWAG00000011453)	NEUROG2 (ENSCWAG00000011435) #7	ALPK1 (ENSCWAG00000011147) #9	TIFA (ENSCWAG00000011127) #10	AP1AR (ENSCWAG00000011073) #11	FAM241A (ENSCWAG00000011031) #12	PITX2 (ENSCWAG00000010901) #13	ENPEP (ENSCWAG00000010751) #14	ELOVL6 (ENSCWAG00000010698) #15	EGF (ENSCWAG00000009046) #16	LRIT3 (ENSCWAG00000008887) #17	RRH (ENSCWAG00000008828) #19	GAR1 (ENSCWAG00000008785) #20	CFI (ENSCWAG00000007869) #21	PLA2G12A (ENSCWAG00000007792)	CASP6 (ENSCWAG00000015869) #22
Pig	MODERN SPECIES	16	ALPK1 (ENSSSCG00000031348) #9	TIFA (ENSSSCG00000009129) #10	AP1AR (ENSSSCG00000009128) #11	FAM241A (ENSSSCG00000055744) #12	PITX2 (ENSSSCG00000034708) #13	ENPEP (ENSSSCG00000009132) #14	ENSSSCG00000009133	ELOVL6 (ENSSSCG00000036236) #15	ENSSSCG00000042004	EGF (ENSSSCG00000009134) #16	LRIT3 (ENSSSCG00000009135) #17	RRH (ENSSSCG00000009136) #19	GAR1 (ENSSSCG00000009137) #20	CFI (ENSSSCG00000009138) #21	PLA2G12A (ENSSSCG00000053405)	CASP6 (ENSSSCG00000009140) #22	MCUB (ENSSSCG00000009141) #18	SEC24B (ENSSSCG00000009142) #24	COL25A1 (ENSSSCG00000039813) #27	ETNPPL (ENSSSCG00000009144) #28	OSTC (ENSSSCG00000009145) #29	ENSSSCG00000009146 ##30	ENSSSCG00000044193	LEF1 (ENSSSCG00000009148) #33	HADH (ENSSSCG00000009150) #34	CYP2U1 (ENSSSCG00000009151) #35	SGMS2 (ENSSSCG00000009152) #36	PAPSS1 (ENSSSCG00000031901) #37	DKK2 (ENSSSCG00000032094)	GIMD1 (ENSSSCG00000039563)	AIMP1 (ENSSSCG00000024168)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.a ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000169429
Cetacea	ANCESTRAL SPECIES	12	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT01010000228945	ENSGT00530000069080	ENSGT00940000154950
Blue whale	MODERN SPECIES	16	TIFA (ENSBMSG00010011281) #10	AP1AR (ENSBMSG00010011262) #11	FAM241A (ENSBMSG00010011240) #12	PITX2 (ENSBMSG00010011211) #13	ENPEP (ENSBMSG00010011169) #14	ENSBMSG00010011157	ENSBMSG00010011146	ELOVL6 (ENSBMSG00010011132) #15	EGF (ENSBMSG00010010764) #16	LRIT3 (ENSBMSG00010010683) #17	RRH (ENSBMSG00010010665) #19	GAR1 (ENSBMSG00010010651) #20	CFI (ENSBMSG00010010282) #21	PLA2G12A (ENSBMSG00010010216)	ENSBMSG00010010200	CASP6 (ENSBMSG00010010157) #22	MCUB (ENSBMSG00010010120) #18	SEC24B (ENSBMSG00010010015) #24	COL25A1 (ENSBMSG00010009308) #27	ETNPPL (ENSBMSG00010009166) #28	ENSBMSG00010009146 #29	ENSBMSG00010009129 ##30	LEF1 (ENSBMSG00010009062) #33	HADH (ENSBMSG00010009016) #34	CYP2U1 (ENSBMSG00010008999) #35	PAPSS1 (ENSBMSG00010008949) #37	DKK2 (ENSBMSG00010008913)	ENSBMSG00010008901	GIMD1 (ENSBMSG00010008886)	AIMP1 (ENSBMSG00010008873)	TBCK (ENSBMSG00010008825)
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00730000111029.h	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT01010000228945	ENSGT00530000069080
Sperm whale	MODERN SPECIES	18	ENSPCTG00005003510 #10	AP1AR (ENSPCTG00005003475) #11	FAM241A (ENSPCTG00005003460) #12	PITX2 (ENSPCTG00005003429) #13	ENSPCTG00005003414	ENPEP (ENSPCTG00005003393) #14	ENSPCTG00005003378	ELOVL6 (ENSPCTG00005003362) #15	ENSPCTG00005003344	EGF (ENSPCTG00005002997) #16	LRIT3 (ENSPCTG00005002927) #17	RRH (ENSPCTG00005002914) #19	GAR1 (ENSPCTG00005002877) #20	CFI (ENSPCTG00005002683) #21	PLA2G12A (ENSPCTG00005002634)	CASP6 (ENSPCTG00005002597) #22	MCUB (ENSPCTG00005002570) #18	ENSPCTG00005002564	SEC24B (ENSPCTG00005002490) #24	COL25A1 (ENSPCTG00005001710) #27	ETNPPL (ENSPCTG00005001536) #28	OSTC (ENSPCTG00005001507) #29	RPL34 (ENSPCTG00005001492) #30	LEF1 (ENSPCTG00005001263) #33	HADH (ENSPCTG00005001187) #34	CYP2U1 (ENSPCTG00005001173) #35	SGMS2 (ENSPCTG00005001158) #36	ENSPCTG00005001150	ENSPCTG00005001147	PAPSS1 (ENSPCTG00005001117) #37	DKK2 (ENSPCTG00005001096)
Odontoceti_a	DUPLICATION
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140.a #22	ENSGT00940000158059 #18	ENSGT00730000111029.h	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT01010000228945	ENSGT00530000069080
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140.a #22	ENSGT00940000158059 #18	ENSGT00730000111029.h	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000015889.o.b.a.b	ENSGT00610000087446.e	ENSGT00390000009613.b #37	ENSGT00940000162188
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140.a #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000015889.o.b.a.b	ENSGT00610000087446.e	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT01010000228945
Beluga whale	MODERN SPECIES	77	ENSDLEG00000017571 #9	ENSDLEG00000017532 #9	ENSDLEG00000017515 #10	AP1AR (ENSDLEG00000017487) #11	ENSDLEG00000017471 #12	ENSDLEG00000017461	ENSDLEG00000017447	PITX2 (ENSDLEG00000017372) #13	ENPEP (ENSDLEG00000017322) #14	ELOVL6 (ENSDLEG00000017291) #15	EGF (ENSDLEG00000017238) #16	LRIT3 (ENSDLEG00000017230) #17	RRH (ENSDLEG00000017217) #19	GAR1 (ENSDLEG00000017209) #20	CFI (ENSDLEG00000017184) #21	CASP6 (ENSDLEG00000017156) #22	MCUB (ENSDLEG00000017145) #18	SEC24B (ENSDLEG00000017023) #24	ETNPPL (ENSDLEG00000016984) #28	OSTC (ENSDLEG00000016962) #29	RPL34 (ENSDLEG00000016949) ##30	LEF1 (ENSDLEG00000016934) #33	HADH (ENSDLEG00000016907) #34	CYP2U1 (ENSDLEG00000016894) #35	SGMS2 (ENSDLEG00000016878) #36	ENSDLEG00000016862	PIGY (ENSDLEG00000016856)	PAPSS1 (ENSDLEG00000016819) #37	DKK2 (ENSDLEG00000016802)	ENSDLEG00000016794	GIMD1 (ENSDLEG00000016786)
Narwhal	MODERN SPECIES	307	ALPK1 (ENSMMNG00015009971) #9	TIFA (ENSMMNG00015009945) #10	AP1AR (ENSMMNG00015009932) #11	FAM241A (ENSMMNG00015009916) #12	ENSMMNG00015009909	ENSMMNG00015010807	PITX2 (ENSMMNG00015010759) #13	ENPEP (ENSMMNG00015010701) #14	ELOVL6 (ENSMMNG00015010678) #15	EGF (ENSMMNG00015010614) #16	LRIT3 (ENSMMNG00015010568) #17	RRH (ENSMMNG00015010550) #19	GAR1 (ENSMMNG00015010535) #20	CFI (ENSMMNG00015010505) #21	PLA2G12A (ENSMMNG00015010490)	CASP6 (ENSMMNG00015010448) #22	MCUB (ENSMMNG00015010413) #18	ENSMMNG00015010407	SEC24B (ENSMMNG00015010228) #24	COL25A1 (ENSMMNG00015009795) #27	ETNPPL (ENSMMNG00015009644) #28	ENSMMNG00015009632 #29	ENSMMNG00015009622 #30	LEF1 (ENSMMNG00015009575) #33	HADH (ENSMMNG00015009539) #34	CYP2U1 (ENSMMNG00015009524) #35	SGMS2 (ENSMMNG00015009514) #36	ENSMMNG00015009508	PIGY (ENSMMNG00015009502)	PAPSS1 (ENSMMNG00015009486) #37	DKK2 (ENSMMNG00015009459)
Vaquita	MODERN SPECIES	16	ALPK1 (ENSPSNG00000004518) #9	TIFA (ENSPSNG00000004555) #10	AP1AR (ENSPSNG00000004571) #11	FAM241A (ENSPSNG00000004608) #12	ENSPSNG00000004627	ENSPSNG00000004644	PITX2 (ENSPSNG00000004709) #13	ENPEP (ENSPSNG00000004770) #14	ELOVL6 (ENSPSNG00000004817) #15	EGF (ENSPSNG00000005048) #16	LRIT3 (ENSPSNG00000005437) #17	RRH (ENSPSNG00000005525) #19	GAR1 (ENSPSNG00000005487) #20	CFI (ENSPSNG00000005631) #21	PLA2G12A (ENSPSNG00000005900)	CASP6 (ENSPSNG00000005965) #22	MCUB (ENSPSNG00000006033) #18	ENSPSNG00000006059	SEC24B (ENSPSNG00000006099) #24	COL25A1 (ENSPSNG00000006689) #27	ETNPPL (ENSPSNG00000007968) #28	ENSPSNG00000008254 #29	ENSPSNG00000008387	LEF1 (ENSPSNG00000008457) #33	HADH (ENSPSNG00000008706) #34	CYP2U1 (ENSPSNG00000008786) #35	SGMS2 (ENSPSNG00000008846) #36	ENSPSNG00000008882	PAPSS1 (ENSPSNG00000008923) #37	DKK2 (ENSPSNG00000008969)	ENSPSNG00000009014
Dolphin	MODERN SPECIES	613													GAR1 (ENSTTRG00000016318) #20	CFI (ENSTTRG00000016317) #21	PLA2G12A (ENSTTRG00000016316)	CASP6 (ENSTTRG00000016314) #22	MCUB (ENSTTRG00000016312) #18	SEC24B (ENSTTRG00000016308) #24
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00940000155140.b #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00940000155140.b #22
Monodontidae	ANCESTRAL SPECIES																	ENSGT00940000155140.b #22
Beluga whale	MODERN SPECIES	84	KYNU (ENSDLEG00000017616)	ARHGAP15 (ENSDLEG00000017655)	GTDC1 (ENSDLEG00000017703)	ENSDLEG00000017836	ZEB2 (ENSDLEG00000017853)	ENSDLEG00000017923	ENSDLEG00000017936	ENSDLEG00000017945	ENSDLEG00000017961	ACVR2A (ENSDLEG00000017968)	ORC4 (ENSDLEG00000017980)	MBD5 (ENSDLEG00000018041)	EPC2 (ENSDLEG00000018060)	KIF5C (ENSDLEG00000018081)	LYPD6B (ENSDLEG00000018208)	ENSDLEG00000018220 #22	LYPD6 (ENSDLEG00000018237)	MMADHC (ENSDLEG00000018246)	RND3 (ENSDLEG00000018265)	RBM43 (ENSDLEG00000018283)	NMI (ENSDLEG00000018288)	TNFAIP6 (ENSDLEG00000018296)	RIF1 (ENSDLEG00000018312)	NEB (ENSDLEG00000018861)	ARL5A (ENSDLEG00000021351)	CACNB4 (ENSDLEG00000021384)	STAM2 (ENSDLEG00000021549)	FMNL2 (ENSDLEG00000021565)	PRPF40A (ENSDLEG00000021630)	ARL6IP6 (ENSDLEG00000021640)	ENSDLEG00000021642
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000162642	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.a ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.gb.b #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000001376.gb.a #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080
Bovidae	ANCESTRAL SPECIES	18	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.gb.b.a #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00390000015688.b	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b.o #15	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223.c #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.gb.a #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984.i #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950.k.a.a	ENSGT00940000158244
Rambouillet Sheep	MODERN SPECIES	22	FAM241A (ENSOARG00020023104) #12	PITX2 (ENSOARG00020023123) #13	ENPEP (ENSOARG00020023177) #14	ELOVL6 (ENSOARG00020023319) #15	RRH (ENSOARG00020023371) #19	GAR1 (ENSOARG00020023399) #20	PLA2G12A (ENSOARG00020023478) #21	MCUB (ENSOARG00020024210) #18	SEC24B (ENSOARG00020024258) #24	ENSOARG00020024351	COL25A1 (ENSOARG00020024421) #27	ETNPPL (ENSOARG00020025401) #28	OSTC (ENSOARG00020025423) #29	ENSOARG00020025433 ##30	ENSOARG00020025438	ENSOARG00020025445 #22	ENSOARG00020025453	ENSOARG00020025464 ##30	LEF1 (ENSOARG00020025493) #33	HADH (ENSOARG00020025577) #34	CYP2U1 (ENSOARG00020025587) #35	SGMS2 (ENSOARG00020025595) #36	PAPSS1 (ENSOARG00020025599) #37	ENSOARG00020025608	ENSOARG00020025611	DKK2 (ENSOARG00020025615)	ENSOARG00020025618	GIMD1 (ENSOARG00020025626)	ENSOARG00020025630	TBCK (ENSOARG00020025643)	NPNT (ENSOARG00020025758)
Goat	MODERN SPECIES	25	NEUROG2 (ENSCHIG00000006855) #7	ALPK1 (ENSCHIG00000020323) #9	ENSCHIG00000024093	TIFA (ENSCHIG00000011120) #10	AP1AR (ENSCHIG00000001992) #11	ENSCHIG00000006533 #12	PITX2 (ENSCHIG00000010484) #13	ENPEP (ENSCHIG00000020658) #14	ENSCHIG00000017386	ELOVL6 (ENSCHIG00000026063) #15	LRIT3 (ENSCHIG00000026202) #17	RRH (ENSCHIG00000004020) #19	ENSCHIG00000016026 #20	CFI (ENSCHIG00000006982) #21	PLA2G12A (ENSCHIG00000026641)	CASP6 (ENSCHIG00000011955) #22	MCUB (ENSCHIG00000011971) #18	SEC24B (ENSCHIG00000018301) #24	COL25A1 (ENSCHIG00000016113) #27	ETNPPL (ENSCHIG00000015229) #28	ENSCHIG00000015972 #29	ENSCHIG00000013243 #30	LEF1 (ENSCHIG00000025316) #33	ENSCHIG00000013637 #34	CYP2U1 (ENSCHIG00000026026) #35	SGMS2 (ENSCHIG00000017842) #36	PAPSS1 (ENSCHIG00000007800) #37	DKK2 (ENSCHIG00000026036)	ENSCHIG00000021709	ENSCHIG00000019094	TBCK (ENSCHIG00000014456)
Bovinae	ANCESTRAL SPECIES	15	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000165227.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.gb.b.a #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00390000001376.hb #29	ENSGT00390000008294.e.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984.h #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188
Bos	ANCESTRAL SPECIES	15	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000165227.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.gb.b.a #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00390000001376.hb #29	ENSGT00390000008294.e.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984.h #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188
Bos_a	ANCESTRAL SPECIES	33	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00390000014814.b.kc.b.a	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000165227.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.gb.b.a #29	ENSGT00390000001376.hb #29	ENSGT00390000008294.e.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984.h #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080
Wild yak	MODERN SPECIES	793							ENSBMUG00000016971	PITX2 (ENSBMUG00000017012) #13	ENPEP (ENSBMUG00000017033) #14	ELOVL6 (ENSBMUG00000017059) #15	LRIT3 (ENSBMUG00000017093) #17	RRH (ENSBMUG00000017139) #19	GAR1 (ENSBMUG00000017171) #20	CFI (ENSBMUG00000017337) #21	PLA2G12A (ENSBMUG00000017371)	CASP6 (ENSBMUG00000017395) #22	MCUB (ENSBMUG00000017425) #18	SEC24B (ENSBMUG00000017475) #24	ENSBMUG00000017501	COL25A1 (ENSBMUG00000017943) #27	ETNPPL (ENSBMUG00000018140) #28	ENSBMUG00000018159 #29	ENSBMUG00000018184 ##30	LEF1 (ENSBMUG00000018299) #33	HADH (ENSBMUG00000018393) #34	CYP2U1 (ENSBMUG00000018417) #35	SGMS2 (ENSBMUG00000018471) #36	SLC28A3 (ENSBMUG00000018525)	NTRK2 (ENSBMUG00000018642)
Domestic yak	MODERN SPECIES	25	FAM241A (ENSBGRG00000002294) #12	ENSBGRG00000002291	ENSBGRG00000002274	PITX2 (ENSBGRG00000002238) #13	ENPEP (ENSBGRG00000002076) #14	ENSBGRG00000002037	ENSBGRG00000002033	ELOVL6 (ENSBGRG00000002007) #15	ENSBGRG00000001977 #16	ENSBGRG00000001959	LRIT3 (ENSBGRG00000001925) #17	RRH (ENSBGRG00000001886) #19	GAR1 (ENSBGRG00000001872) #20	CFI (ENSBGRG00000001749) #21	PLA2G12A (ENSBGRG00000001718)	CASP6 (ENSBGRG00000001666) #22	MCUB (ENSBGRG00000001558) #18	SEC24B (ENSBGRG00000001484) #24	COL25A1 (ENSBGRG00000000622) #27	ETNPPL (ENSBGRG00000000493) #28	ENSBGRG00000000413 #29	ENSBGRG00000000373 ##30	LEF1 (ENSBGRG00000006944) #33	HADH (ENSBGRG00000006801) #34	CYP2U1 (ENSBGRG00000006714) #35	SGMS2 (ENSBGRG00000006674) #36	PAPSS1 (ENSBGRG00000006562) #37	DKK2 (ENSBGRG00000006499)	GIMD1 (ENSBGRG00000006470)	ENSBGRG00000006455	AIMP1 (ENSBGRG00000006343)
Bos_b	ANCESTRAL SPECIES	14	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT00390000004094.f	ENSGT00510000046985.h.a.id.a	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00390000002517.a.b.a.g.a.a	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000165227.b	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.gb.b.a #29	ENSGT00390000008294.e.b.a.b ##30	ENSGT00940000159660 #33	ENSGT00940000159984.h #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Cow	MODERN SPECIES	25	AP1AR (ENSBTAG00000003941) #11	FAM241A (ENSBTAG00000017375) #12	PITX2 (ENSBTAG00000009059) #13	ENPEP (ENSBTAG00000008332) #14	ENSBTAG00000054468	ELOVL6 (ENSBTAG00000010564) #15	ENSBTAG00000038368	EGF (ENSBTAG00000048812) #16	ENSBTAG00000046949	LRIT3 (ENSBTAG00000007019) #17	ENSBTAG00000053284	RRH (ENSBTAG00000000751) #19	GAR1 (ENSBTAG00000000748) #20	CFI (ENSBTAG00000034501) #21	PLA2G12A (ENSBTAG00000015230)	CASP6 (ENSBTAG00000012537) #22	MCUB (ENSBTAG00000012995) #18	SEC24B (ENSBTAG00000010945) #24	ENSBTAG00000049691	ETNPPL (ENSBTAG00000010284) #28	OSTC (ENSBTAG00000011611) #29	RPL34 (ENSBTAG00000014226) ##30	LEF1 (ENSBTAG00000006844) #33	HADH (ENSBTAG00000002049) #34	CYP2U1 (ENSBTAG00000012972) #35	SGMS2 (ENSBTAG00000016805) #36	PAPSS1 (ENSBTAG00000012961) #37	DKK2 (ENSBTAG00000012969)	ENSBTAG00000054885	GIMD1 (ENSBTAG00000047891)	AIMP1 (ENSBTAG00000004230)
Hybrid Bos Indicus	MODERN SPECIES	25	ALPK1 (ENSBIXG00005026470) #9	TIFA (ENSBIXG00005026412) #10	AP1AR (ENSBIXG00005004507) #11	FAM241A (ENSBIXG00005007640) #12	PITX2 (ENSBIXG00005026316) #13	ENPEP (ENSBIXG00005026167) #14	ENSBIXG00005026105	ENSBIXG00005026078	ENSBIXG00005026062	ELOVL6 (ENSBIXG00005026027) #15	ENSBIXG00005005779 #16	ENSBIXG00005025927	LRIT3 (ENSBIXG00005025878) #17	MCUB (ENSBIXG00005025807) #18	CFI (ENSBIXG00005005775) #21	CASP6 (ENSBIXG00005007241) #22	SEC24B (ENSBIXG00005006858) #24	ENSBIXG00005007629	COL25A1 (ENSBIXG00005025230) #27	ETNPPL (ENSBIXG00005025104) #28	ENSBIXG00005005563 #29	ENSBIXG00005024929 ##30	ENSBIXG00005004244	LEF1 (ENSBIXG00005024848) #33	HADH (ENSBIXG00005024749) #34	CYP2U1 (ENSBIXG00005024695) #35	SGMS2 (ENSBIXG00005024656) #36	PAPSS1 (ENSBIXG00005024610) #37	ENSBIXG00005004183	DKK2 (ENSBIXG00005024455)	ENSBIXG00005024432
American bison	MODERN SPECIES	3303	AP1AR (ENSBBBG00000025159) #11	ENSBBBG00000008246 #12	ENSBBBG00000025125	PITX2 (ENSBBBG00000006652) #13	ENPEP (ENSBBBG00000025085) #14	ENSBBBG00000025037	ENSBBBG00000008069	ELOVL6 (ENSBBBG00000025019) #15	EGF (ENSBBBG00000025002) #16	ENSBBBG00000024938	LRIT3 (ENSBBBG00000006581) #17	RRH (ENSBBBG00000024917) #19	GAR1 (ENSBBBG00000006563) #20	CFI (ENSBBBG00000024858) #21	PLA2G12A (ENSBBBG00000024789)	CASP6 (ENSBBBG00000024760) #22	MCUB (ENSBBBG00000007811) #18	SEC24B (ENSBBBG00000000163) #24	ENSBBBG00000006417	COL25A1 (ENSBBBG00000024550) #27	ETNPPL (ENSBBBG00000023878) #28	ENSBBBG00000006204 #29	ENSBBBG00000023803 ##30	LEF1 (ENSBBBG00000023784) #33	ENSBBBG00000023720 #34	CYP2U1 (ENSBBBG00000023696) #35	SGMS2 (ENSBBBG00000023687) #36	PAPSS1 (ENSBBBG00000023663) #37
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1271	ALPK1 (ENSMMSG00000024041) #9	ENSMMSG00000024037 #10	ENSMMSG00000024030 #11	FAM241A (ENSMMSG00000024017) #12	ENSMMSG00000024009	PITX2 (ENSMMSG00000023999) #13	ENPEP (ENSMMSG00000023990) #14	ELOVL6 (ENSMMSG00000023985) #15	ENSMMSG00000023982	LRIT3 (ENSMMSG00000023978) #17	RRH (ENSMMSG00000023973) #19	ENSMMSG00000023967 #20	ENSMMSG00000023961 #20	CFI (ENSMMSG00000023937) #21	ENSMMSG00000023917	ENSMMSG00000023895 #22	MCUB (ENSMMSG00000023886) #18	SEC24B (ENSMMSG00000023830) #24	ENSMMSG00000023809	COL25A1 (ENSMMSG00000023350) #27	ETNPPL (ENSMMSG00000023216) #28	ENSMMSG00000023201 #29	ENSMMSG00000023187 #30	LEF1 (ENSMMSG00000023098) #33	HADH (ENSMMSG00000023062) #34	CYP2U1 (ENSMMSG00000023053) #35	SGMS2 (ENSMMSG00000023045) #36	PAPSS1 (ENSMMSG00000023028) #37	ENSMMSG00000023019	DKK2 (ENSMMSG00000023012)	GIMD1 (ENSMMSG00000023007)
Siberian musk deer	MODERN SPECIES	148								PIK3C3 (ENSMMSG00000011802)	ENSMMSG00000011974	ENSMMSG00000011984	SYT4 (ENSMMSG00000012002)	ENSMMSG00000012037	SERPINB8 (ENSMMSG00000012077)	CDH7 (ENSMMSG00000012136)	CDH19 (ENSMMSG00000012223)	ENSMMSG00000012238 #22	TMX3 (ENSMMSG00000012244)	CCDC102B (ENSMMSG00000012350)	DOK6 (ENSMMSG00000012414)	RTTN (ENSMMSG00000012499)	SOCS6 (ENSMMSG00000012562)	CBLN2 (ENSMMSG00000012573)	ENSMMSG00000012605	NETO1 (ENSMMSG00000012622)	FBXO15 (ENSMMSG00000012668)	TIMM21 (ENSMMSG00000012729)	CYB5A (ENSMMSG00000012765)	C18orf63 (ENSMMSG00000012804)	DIPK1C (ENSMMSG00000012860)
Yarkand deer	MODERN SPECIES	8	TIFA (ENSCHYG00000017159) #10	AP1AR (ENSCHYG00000017199) #11	FAM241A (ENSCHYG00000017369) #12	ENSCHYG00000017401	ENSCHYG00000017419	PITX2 (ENSCHYG00000017532) #13	ENPEP (ENSCHYG00000017750) #14	ELOVL6 (ENSCHYG00000018333) #15	ENSCHYG00000018367	ENSCHYG00000018402 #16	LRIT3 (ENSCHYG00000018518) #17	RRH (ENSCHYG00000018607) #19	GAR1 (ENSCHYG00000018741) #20	CFI (ENSCHYG00000018892) #21	ENSCHYG00000020524	CASP6 (ENSCHYG00000020581) #22	MCUB (ENSCHYG00000020811) #18	SEC24B (ENSCHYG00000021070) #24	COL25A1 (ENSCHYG00000023049) #27	ETNPPL (ENSCHYG00000024949) #28	OSTC (ENSCHYG00000025020) #29	ENSCHYG00000025066	ENSCHYG00000025081 ##30	LEF1 (ENSCHYG00000025171) #33	HADH (ENSCHYG00000025336) #34	CYP2U1 (ENSCHYG00000025388) #35	ENSCHYG00000025488 #37	ENSCHYG00000025558	ENSCHYG00000025585	ENSCHYG00000025597	ENSCHYG00000025630
Camelidae	ANCESTRAL SPECIES	20	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376 #29	ENSGT00390000008294.e.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Arabian camel	MODERN SPECIES	11	ENSCDRG00005007686	ENSCDRG00005007817	NEUROG2 (ENSCDRG00005007881) #7	ALPK1 (ENSCDRG00005007933) #9	TIFA (ENSCDRG00005008057) #10	AP1AR (ENSCDRG00005008074) #11	FAM241A (ENSCDRG00005008182) #12	PITX2 (ENSCDRG00005008309) #13	ENPEP (ENSCDRG00005008426) #14	ELOVL6 (ENSCDRG00005008682) #15	EGF (ENSCDRG00005008742) #16	LRIT3 (ENSCDRG00005009270) #17	RRH (ENSCDRG00005009398) #19	CFI (ENSCDRG00005009663) #21	PLA2G12A (ENSCDRG00005009961)	CASP6 (ENSCDRG00005010019) #22	MCUB (ENSCDRG00005010226) #18	SEC24B (ENSCDRG00005010364) #24	COL25A1 (ENSCDRG00005010697) #27	ETNPPL (ENSCDRG00005011685) #28	OSTC (ENSCDRG00005011891) #29	ENSCDRG00005011976 ##30	ENSCDRG00005012022	LEF1 (ENSCDRG00005012067) #33	HADH (ENSCDRG00005012655) #34	CYP2U1 (ENSCDRG00005012785) #35	SGMS2 (ENSCDRG00005012842) #36	PAPSS1 (ENSCDRG00005012902) #37	DKK2 (ENSCDRG00005012999)	GIMD1 (ENSCDRG00005013046)	AIMP1 (ENSCDRG00005013076)
Alpaca	MODERN SPECIES	2533									ENSVPAG00000009848 #15	EGF (ENSVPAG00000009847) #16	LRIT3 (ENSVPAG00000009846) #17	RRH (ENSVPAG00000009845) #19	GAR1 (ENSVPAG00000009844) #20	CFI (ENSVPAG00000009843) #21	PLA2G12A (ENSVPAG00000009842)	CASP6 (ENSVPAG00000009840) #22	MCUB (ENSVPAG00000009837) #18	SEC24B (ENSVPAG00000009835) #24	COL25A1 (ENSVPAG00000009832) #27
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000169429
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT01100000265636	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950.p	ENSGT00940000158244
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT01100000265636	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950.p	ENSGT00940000158244
leopard	MODERN SPECIES	3	ENSPPRG00000006854	ENSPPRG00000009282	FAM241A (ENSPPRG00000009553) #12	ENSPPRG00000009727	PITX2 (ENSPPRG00000010348) #13	ENPEP (ENSPPRG00000010666) #14	ENSPPRG00000011064	ELOVL6 (ENSPPRG00000011540) #15	EGF (ENSPPRG00000019907) #16	LRIT3 (ENSPPRG00000021787) #17	RRH (ENSPPRG00000023871) #19	GAR1 (ENSPPRG00000023697) #20	ENSPPRG00000023609	CFI (ENSPPRG00000001399) #21	PLA2G12A (ENSPPRG00000001811)	CASP6 (ENSPPRG00000002287) #22	MCUB (ENSPPRG00000002855) #18	SEC24B (ENSPPRG00000004492) #24	COL25A1 (ENSPPRG00000010801) #27	ETNPPL (ENSPPRG00000012486) #28	ENSPPRG00000012933 #29	ENSPPRG00000013513 ##30	LEF1 (ENSPPRG00000015396) #33	HADH (ENSPPRG00000020822) #34	CYP2U1 (ENSPPRG00000022125) #35	SGMS2 (ENSPPRG00000023391) #36	ENSPPRG00000022924	PAPSS1 (ENSPPRG00000022612) #37	ENSPPRG00000000898	DKK2 (ENSPPRG00000001046)	GIMD1 (ENSPPRG00000002041)
lion	MODERN SPECIES	4	ALPK1 (ENSPLOG00000022742) #9	TIFA (ENSPLOG00000022743) #10	AP1AR (ENSPLOG00000022744) #11	ENSPLOG00000004715	FAM241A (ENSPLOG00000004730) #12	ENSPLOG00000004736	PITX2 (ENSPLOG00000004787) #13	ENPEP (ENSPLOG00000004896) #14	ELOVL6 (ENSPLOG00000004917) #15	EGF (ENSPLOG00000005057) #16	LRIT3 (ENSPLOG00000005302) #17	RRH (ENSPLOG00000005309) #19	GAR1 (ENSPLOG00000005331) #20	CFI (ENSPLOG00000005431) #21	PLA2G12A (ENSPLOG00000005482)	CASP6 (ENSPLOG00000005535) #22	MCUB (ENSPLOG00000005572) #18	SEC24B (ENSPLOG00000005625) #24	COL25A1 (ENSPLOG00000005916) #27	ETNPPL (ENSPLOG00000007649) #28	OSTC (ENSPLOG00000007801) #29	ENSPLOG00000007832 ##30	LEF1 (ENSPLOG00000007905) #33	HADH (ENSPLOG00000008215) #34	CYP2U1 (ENSPLOG00000008280) #35	SGMS2 (ENSPLOG00000008317) #36	PAPSS1 (ENSPLOG00000008350) #37	ENSPLOG00000008380	DKK2 (ENSPLOG00000008392)	GIMD1 (ENSPLOG00000008434)	AIMP1 (ENSPLOG00000008460)
Tiger	MODERN SPECIES	583	ENSPTIG00000011290 #9	TIFA (ENSPTIG00000005704) #10	AP1AR (ENSPTIG00000011882) #11	ENSPTIG00000005762	ENSPTIG00000005773 #12	ENSPTIG00000013940	PITX2 (ENSPTIG00000014476) #13	ENPEP (ENSPTIG00000016216) #14	ELOVL6 (ENSPTIG00000017844) #15	EGF (ENSPTIG00000018358) #16	LRIT3 (ENSPTIG00000021262) #17	RRH (ENSPTIG00000021341) #19	GAR1 (ENSPTIG00000021565) #20	CFI (ENSPTIG00000021738) #21	PLA2G12A (ENSPTIG00000008618)	CASP6 (ENSPTIG00000009581) #22	MCUB (ENSPTIG00000011866) #18	SEC24B (ENSPTIG00000012864) #24
Cat	MODERN SPECIES	235	NEUROG2 (ENSFCAG00000010711) #7	ALPK1 (ENSFCAG00000010710) #9	TIFA (ENSFCAG00000042762) #10	AP1AR (ENSFCAG00000023040) #11	FAM241A (ENSFCAG00000043632) #12	ENSFCAG00000029403	PITX2 (ENSFCAG00000007195) #13	ENPEP (ENSFCAG00000000075) #14	ELOVL6 (ENSFCAG00000039104) #15	EGF (ENSFCAG00000000506) #16	LRIT3 (ENSFCAG00000035670) #17	RRH (ENSFCAG00000005461) #19	ENSFCAG00000040791 #20	CFI (ENSFCAG00000000105) #21	ENSFCAG00000034487	CASP6 (ENSFCAG00000003400) #22	MCUB (ENSFCAG00000018997) #18	SEC24B (ENSFCAG00000000069) #24	COL25A1 (ENSFCAG00000041813) #27	ENSFCAG00000050516	ETNPPL (ENSFCAG00000002319) #28	OSTC (ENSFCAG00000040199) #29	RPL34 (ENSFCAG00000015502) #30	LEF1 (ENSFCAG00000027039) #33	HADH (ENSFCAG00000022260) #34	CYP2U1 (ENSFCAG00000015335) #35	PAPSS1 (ENSFCAG00000007221) #37	SGMS2 (ENSFCAG00000012289) #36	ENSFCAG00000034912	DKK2 (ENSFCAG00000043481)	GIMD1 (ENSFCAG00000036567)
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db.g #29	ENSGT00390000008294.e.b.a.a ##30	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db.g #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000169429
Ursidae	ANCESTRAL SPECIES	17	ENSGT00940000162335.d	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042.b #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db.g #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
Ursus	ANCESTRAL SPECIES	74	ENSGT00940000162335.d	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT00950000183010.a.b.a.a.a.a.a.b.a.a	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042.b #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000157910 #28	ENSGT00390000001376.db.g #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660.e #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000169429
American black bear	MODERN SPECIES	5461														CFI (ENSUAMG00000024591) #21	PLA2G12A (ENSUAMG00000024585)	CASP6 (ENSUAMG00000024583) #22	MCUB (ENSUAMG00000024581) #18
Polar bear	MODERN SPECIES	159	ENSUMAG00000002189 #9	ENSUMAG00000002186 #9	TIFA (ENSUMAG00000002179) #10	AP1AR (ENSUMAG00000002175) #11	ENSUMAG00000002171 #12	PITX2 (ENSUMAG00000002143) #13	ENPEP (ENSUMAG00000000955) #14	ENSUMAG00000000844	ELOVL6 (ENSUMAG00000000832) #15	EGF (ENSUMAG00000000821) #16	LRIT3 (ENSUMAG00000000802) #17	RRH (ENSUMAG00000000781) #19	GAR1 (ENSUMAG00000000776) #20	CFI (ENSUMAG00000000770) #21	PLA2G12A (ENSUMAG00000000760)	ENSUMAG00000000755 #22	MCUB (ENSUMAG00000000708) #18	SEC24B (ENSUMAG00000000694) #24	ETNPPL (ENSUMAG00000000654) #28	OSTC (ENSUMAG00000000640) #29	ENSUMAG00000000631 ##30	LEF1 (ENSUMAG00000000609) #33	HADH (ENSUMAG00000000448) #34	CYP2U1 (ENSUMAG00000000418) #35	SGMS2 (ENSUMAG00000000407) #36	PAPSS1 (ENSUMAG00000000397) #37	DKK2 (ENSUMAG00000000387)	GIMD1 (ENSUMAG00000000374)	AIMP1 (ENSUMAG00000000180)	TBCK (ENSUMAG00000000081)	NPNT (ENSUMAG00000022667)
Giant Panda	MODERN SPECIES	2	ALPK1 (ENSAMEG00000014797) #9	TIFA (ENSAMEG00000018870) #10	AP1AR (ENSAMEG00000014805) #11	FAM241A (ENSAMEG00000014823) #12	PITX2 (ENSAMEG00000014836) #13	ENPEP (ENSAMEG00000014850) #14	ELOVL6 (ENSAMEG00000014947) #15	ENSAMEG00000030246	EGF (ENSAMEG00000014957) #16	ENSAMEG00000004605 #20	LRIT3 (ENSAMEG00000004620) #17	ENSAMEG00000004608 #19	ENSAMEG00000025418	CFI (ENSAMEG00000004559) #21	PLA2G12A (ENSAMEG00000004540)	CASP6 (ENSAMEG00000004526) #22	MCUB (ENSAMEG00000004507) #18	SEC24B (ENSAMEG00000001636) #24	COL25A1 (ENSAMEG00000001701) #27	ETNPPL (ENSAMEG00000001726) #28	OSTC (ENSAMEG00000001753) #29	RPL34 (ENSAMEG00000001758) ##30	LEF1 (ENSAMEG00000001768) #33	HADH (ENSAMEG00000001814) #34	CYP2U1 (ENSAMEG00000001857) #35	SGMS2 (ENSAMEG00000001890) #36	PAPSS1 (ENSAMEG00000001893) #37	DKK2 (ENSAMEG00000024962)	GIMD1 (ENSAMEG00000017505)	AIMP1 (ENSAMEG00000017499)	TBCK (ENSAMEG00000017479)
Mustelinae	ANCESTRAL SPECIES	50	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00730000111880	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db.f.b #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950
American mink	MODERN SPECIES	23							ENSNVIG00000008883	ENPEP (ENSNVIG00000008861) #14	ELOVL6 (ENSNVIG00000008824) #15	EGF (ENSNVIG00000008686) #16	LRIT3 (ENSNVIG00000008664) #17	RRH (ENSNVIG00000008643) #19	GAR1 (ENSNVIG00000008616) #20	ENSNVIG00000008605 #21	PLA2G12A (ENSNVIG00000008582)	CASP6 (ENSNVIG00000008531) #22	MCUB (ENSNVIG00000008506) #18	SEC24B (ENSNVIG00000007302) #24	COL25A1 (ENSNVIG00000006813) #27	ETNPPL (ENSNVIG00000006726) #28	OSTC (ENSNVIG00000006710) #29	ENSNVIG00000006689 #30	Lef-1 (ENSNVIG00000006522) #33	ENSNVIG00000006476	CYP2U1 (ENSNVIG00000006464) #35	ENSNVIG00000006446	ENSNVIG00000006431	SGMS2 (ENSNVIG00000006393) #36	PAPSS1 (ENSNVIG00000006373) #37	DKK2 (ENSNVIG00000006330)	GIMD1 (ENSNVIG00000006313)
Canidae	ANCESTRAL SPECIES	40	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00390000004322.a.b.j.b	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.cb.a #29	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950.q	ENSGT00940000169429	ENSGT00940000158244
Canis_lupus	ANCESTRAL SPECIES	30	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00390000004322.a.b.j.b.a	ENSGT00940000162789 #13	ENSGT00940000164617	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00950000183210.d.a.c.b.b.b.b	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000015789.c.b	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950.q	ENSGT00940000169429	ENSGT00940000158244
Dingo	MODERN SPECIES	308	AP1AR (ENSCAFG00020017172) #11	FAM241A (ENSCAFG00020017167) #12	ENSCAFG00020017152	ENSCAFG00020017149	ENSCAFG00020017147	ENPEP (ENSCAFG00020015734) #14	ENSCAFG00020015727	ELOVL6 (ENSCAFG00020015726) #15	ENSCAFG00020015724	EGF (ENSCAFG00020015579) #16	LRIT3 (ENSCAFG00020015570) #17	RRH (ENSCAFG00020015567) #19	GAR1 (ENSCAFG00020015566) #20	CFI (ENSCAFG00020015559) #21	PLA2G12A (ENSCAFG00020015557)	CASP6 (ENSCAFG00020015552) #22	MCUB (ENSCAFG00020015544) #18	SEC24B (ENSCAFG00020010198) #24	ENSCAFG00020010068 #28	ENSCAFG00020010062 #29	ENSCAFG00020010061 ##30	ENSCAFG00020010057	LEF1 (ENSCAFG00020010052) #33	HADH (ENSCAFG00020010045) #34	CYP2U1 (ENSCAFG00020010041) #35	SGMS2 (ENSCAFG00020010038) #36	ENSCAFG00020010027 #37	DKK2 (ENSCAFG00020010010)	ENSCAFG00020010008	ENSCAFG00020010004	GIMD1 (ENSCAFG00020009998)
Dog	MODERN SPECIES	25	ALPK1 (ENSCAFG00845016654) #9	TIFA (ENSCAFG00845016552) #10	AP1AR (ENSCAFG00845016400) #11	FAM241A (ENSCAFG00845016273) #12	ENSCAFG00845016089	PITX2 (ENSCAFG00845016014) #13	ENSCAFG00845015951	ENPEP (ENSCAFG00845015843) #14	ENSCAFG00845015801	ELOVL6 (ENSCAFG00845030224) #15	EGF (ENSCAFG00845030111) #16	LRIT3 (ENSCAFG00845030077) #17	GAR1 (ENSCAFG00845030039) #19	CFI (ENSCAFG00845029982) #21	PLA2G12A (ENSCAFG00845029955)	CASP6 (ENSCAFG00845029938) #22	MCUB (ENSCAFG00845029908) #18	SEC24B (ENSCAFG00845029793) #24	COL25A1 (ENSCAFG00845029602) #27	ETNPPL (ENSCAFG00845029485) #28	OSTC (ENSCAFG00845029437) #29	RPL34 (ENSCAFG00845029396) ##30	ENSCAFG00845029318	LEF1 (ENSCAFG00845029249) #33	HADH (ENSCAFG00845029127) #34	ENSCAFG00845028935 #35	SGMS2 (ENSCAFG00845028905) #36	PAPSS1 (ENSCAFG00845028839) #37	DKK2 (ENSCAFG00845028785)	GIMD1 (ENSCAFG00845028766)	AIMP1 (ENSCAFG00845028734)
Red fox	MODERN SPECIES	40	ENSVVUG00000012060	ENSVVUG00000012064	ENSVVUG00000012067	CST11 (ENSVVUG00000012069)	CSTL1 (ENSVVUG00000012073)	NAPB (ENSVVUG00000012075)	GZF1 (ENSVVUG00000012086)	NXT1 (ENSVVUG00000012091)	ENSVVUG00000012111	PAX1 (ENSVVUG00000012146)	NKX2-2 (ENSVVUG00000012163)	ENSVVUG00000012172	XRN2 (ENSVVUG00000012178)	KIZ (ENSVVUG00000012190)	RALGAPA2 (ENSVVUG00000012242)	ENSVVUG00000012364 #22	CFAP61 (ENSVVUG00000012388)	ENSVVUG00000012539	CRNKL1 (ENSVVUG00000012559)	NAA20 (ENSVVUG00000012582)	ENSVVUG00000012599	RIN2 (ENSVVUG00000012604)	SLC24A3 (ENSVVUG00000012656)	ENSVVUG00000012858	DTD1 (ENSVVUG00000012861)	SMIM26 (ENSVVUG00000012870)	SEC23B (ENSVVUG00000012875)	RBBP9 (ENSVVUG00000012898)	ENSVVUG00000012920	POLR3F (ENSVVUG00000012925)	DZANK1 (ENSVVUG00000013009)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000162335	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Chiroptera	ANCESTRAL SPECIES	9							ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164073	ENSGT00940000162188	ENSGT00530000069080
Microchiroptera	ANCESTRAL SPECIES	10							ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00390000008798.c	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.f #30	ENSGT00390000008294.e.b.a.a ##30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000009613.b #37	ENSGT00940000164073	ENSGT00940000162188	ENSGT00530000069080
Greater horseshoe bat	MODERN SPECIES	23	FAM114A1 (ENSRFEG00010004887)	TMEM156 (ENSRFEG00010004878)	KLHL5 (ENSRFEG00010004840)	WDR19 (ENSRFEG00010004764)	RFC1 (ENSRFEG00010004720)	ENSRFEG00010004700	ENSRFEG00010004682	ENPEP (ENSRFEG00010004651) #14	ELOVL6 (ENSRFEG00010004640) #15	EGF (ENSRFEG00010004614) #16	LRIT3 (ENSRFEG00010004578) #17	RRH (ENSRFEG00010004533) #19	GAR1 (ENSRFEG00010004525) #20	ENSRFEG00010004517	CFI (ENSRFEG00010004410) #21	CASP6 (ENSRFEG00010004339) #22	MCUB (ENSRFEG00010004308) #18	SEC24B (ENSRFEG00010004287) #24	COL25A1 (ENSRFEG00010003938) #27	ETNPPL (ENSRFEG00010003723) #28	OSTC (ENSRFEG00010003698) #29	ENSRFEG00010003688 ##30	ENSRFEG00010003676	LEF1 (ENSRFEG00010003558) #33	CYP2U1 (ENSRFEG00010003430) #35	ENSRFEG00010003401	SGMS2 (ENSRFEG00010003389) #36	PAPSS1 (ENSRFEG00010003368) #37	DKK2 (ENSRFEG00010003271)	GIMD1 (ENSRFEG00010003248)	ENSRFEG00010003218
Microbat	MODERN SPECIES	484																CASP6 (ENSMLUG00000000965) #22
Megabat	MODERN SPECIES	876									ELOVL6 (ENSPVAG00000006007) #15	EGF (ENSPVAG00000006003) #16	LRIT3 (ENSPVAG00000006000) #17	RRH (ENSPVAG00000005995) #19	GAR1 (ENSPVAG00000005992) #20	CFI (ENSPVAG00000005988) #21	PLA2G12A (ENSPVAG00000005987)	CASP6 (ENSPVAG00000005983) #22	MCUB (ENSPVAG00000005981) #18	SEC24B (ENSPVAG00000005978) #24
Equus	ANCESTRAL SPECIES	24	ENSGT00940000154949.b	ENSGT00940000162642	ENSGT00940000162895 #7	ENSGT00940000159753 #9	ENSGT00940000154589.b #10	ENSGT00390000002219 #11	ENSGT00940000154340.A #12	ENSGT00940000162789 #13	ENSGT00940000156946 #14	ENSGT01050000244965.b #15	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #19	ENSGT00730000111223 #20	ENSGT00930000151042 #21	ENSGT00940000155140 #22	ENSGT00940000158059 #18	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #27	ENSGT00940000157910 #28	ENSGT00390000001376.db #29	ENSGT00390000008294.f #30	ENSGT00940000159660 #33	ENSGT00940000159984 #34	ENSGT00940000157714 #35	ENSGT00940000157370 #36	ENSGT00390000012976.c.a.a	ENSGT00390000009613.b #37	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950.w
Horse	MODERN SPECIES	11	LARP7 (ENSECAG00000000834)	ZGRF1 (ENSECAG00000002675)	NEUROG2 (ENSECAG00000035491) #7	ALPK1 (ENSECAG00000007247) #9	TIFA (ENSECAG00000004523) #10	AP1AR (ENSECAG00000007498) #11	FAM241A (ENSECAG00000007863) #12	PITX2 (ENSECAG00000008407) #13	ENPEP (ENSECAG00000009107) #14	ELOVL6 (ENSECAG00000010720) #15	EGF (ENSECAG00000010741) #16	LRIT3 (ENSECAG00000013302) #17	RRH (ENSECAG00000013464) #19	GAR1 (ENSECAG00000013624) #20	CFI (ENSECAG00000013869) #21	CASP6 (ENSECAG00000015479) #22	MCUB (ENSECAG00000016301) #18	SEC24B (ENSECAG00000016518) #24	COL25A1 (ENSECAG00000017518) #27	ETNPPL (ENSECAG00000018724) #28	OSTC (ENSECAG00000019709) #29	RPL34 (ENSECAG00000019719) #30	LEF1 (ENSECAG00000019975) #33	ENSECAG00000057434	CYP2U1 (ENSECAG00000021232) #34	CYP2U1 (ENSECAG00000048143) #35	SGMS2 (ENSECAG00000021665) #36	ENSECAG00000032757	PAPSS1 (ENSECAG00000021678) #37	DKK2 (ENSECAG00000032911)	AIMP1 (ENSECAG00000006138)
Donkey	MODERN SPECIES	22	ZGRF1 (ENSEASG00005005589)	ALPK1 (ENSEASG00005005579) #9	TIFA (ENSEASG00005023815) #10	AP1AR (ENSEASG00005032830) #11	ENSEASG00005025146 #12	PITX2 (ENSEASG00005005562) #13	ENPEP (ENSEASG00005004746) #14	ENSEASG00005004686	ELOVL6 (ENSEASG00005004683) #15	EGF (ENSEASG00005004674) #16	ENSEASG00005004681	LRIT3 (ENSEASG00005004671) #17	RRH (ENSEASG00005004665) #19	GAR1 (ENSEASG00005004658) #20	CFI (ENSEASG00005004646) #21	CASP6 (ENSEASG00005004631) #22	MCUB (ENSEASG00005004625) #18	SEC24B (ENSEASG00005004609) #24	COL25A1 (ENSEASG00005036242) #27	ETNPPL (ENSEASG00005004593) #28	OSTC (ENSEASG00005034695) #29	ENSEASG00005004585 #30	LEF1 (ENSEASG00005004575) #33	HADH (ENSEASG00005004564) #34	CYP2U1 (ENSEASG00005004558) #35	SGMS2 (ENSEASG00005004553) #36	ENSEASG00005033971	PAPSS1 (ENSEASG00005004544) #37	DKK2 (ENSEASG00005028714)	ENSEASG00005004539	ENSEASG00005004535
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155140 #22
Hedgehog	MODERN SPECIES	4000																ENSEEUG00000015744 #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	10520																ENSSARG00000007991 #22
Common shrew	MODERN SPECIES	10509																ENSSARG00000004142 #22