Murinae	ANCESTRAL SPECIES	5	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000154340.A	ENSGT00940000162789	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #18	ENSGT00730000111223 #19	ENSGT00930000151042 #20	ENSGT00390000008798.c #21	ENSGT00940000155140 #22	ENSGT00940000158059 #23	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #25	ENSGT00940000157910 #26	ENSGT00390000001376 #27	ENSGT00390000008294.e.b.a.b #28	ENSGT00940000159660 #31	ENSGT00940000159984 #32	ENSGT00940000157714 #33	ENSGT00940000157370 #34	ENSGT00390000009613.b #35	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mus	ANCESTRAL SPECIES	7	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000154340.A	ENSGT00940000162789	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #18	ENSGT00730000111223 #19	ENSGT00930000151042 #20	ENSGT00390000008798.c #21	ENSGT00940000155140 #22	ENSGT00940000158059 #23	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #25	ENSGT00940000157910 #26	ENSGT00390000001376 #27	ENSGT00390000008294.e.b.a.b #28	ENSGT00940000159660 #31	ENSGT00940000159984 #32	ENSGT00940000157714 #33	ENSGT00940000157370 #34	ENSGT00390000009613.b #35	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000154340.A	ENSGT00940000162789	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #18	ENSGT00730000111223 #19	ENSGT00930000151042 #20	ENSGT00390000008798.c #21	ENSGT00940000155140 #22	ENSGT00940000158059 #23	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #25	ENSGT00940000157910 #26	ENSGT00390000001376 #27	ENSGT00390000008294.e.b.a.b #28	ENSGT00940000159660 #31	ENSGT00940000159984 #32	ENSGT00940000157714 #33	ENSGT00940000157370 #34	ENSGT00390000009613.b #35	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000154340.A	ENSGT00940000162789	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #18	ENSGT00730000111223 #19	ENSGT00930000151042 #20	ENSGT00390000008798.c #21	ENSGT00940000155140 #22	ENSGT00940000158059 #23	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #25	ENSGT00940000157910 #26	ENSGT00390000001376 #27	ENSGT00390000008294.e.b.a.b #28	ENSGT00940000159660 #31	ENSGT00940000159984 #32	ENSGT00940000157714 #33	ENSGT00940000157370 #34	ENSGT00390000009613.b #35	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000162335	ENSGT00940000162895	ENSGT00940000159753	ENSGT00940000154589.b	ENSGT00390000002219	ENSGT00940000154340.A	ENSGT00940000162789	ENSGT00940000156946	ENSGT01050000244965.b	ENSGT00940000158366 #16	ENSGT00940000156627 #17	ENSGT01100000263524.I #18	ENSGT00730000111223 #19	ENSGT00930000151042 #20	ENSGT00390000008798.c #21	ENSGT00940000155140 #22	ENSGT00940000158059 #23	ENSGT00950000182924.B.a.a #24	ENSGT00940000159823 #25	ENSGT00940000157910 #26	ENSGT00390000001376 #27	ENSGT00390000008294.e.b.a.b #28	ENSGT00940000159660 #31	ENSGT00940000159984 #32	ENSGT00940000157714 #33	ENSGT00940000157370 #34	ENSGT00390000009613.b #35	ENSGT00940000162188	ENSGT00530000069080	ENSGT00940000154950	ENSGT00940000158244
Steppe mouse	MODERN SPECIES	3091									ENSMSIG00000030559 #15	Egf (ENSMSIG00000030560) #16	Lrit3 (ENSMSIG00000030577) #17	Rrh (ENSMSIG00000030581) #18	Gar1 (ENSMSIG00000030600) #19	Cfi (ENSMSIG00000030603) #20	Pla2g12a (ENSMSIG00000030605) #21	Casp6 (ENSMSIG00000030608) #22	Mcub (ENSMSIG00000030610) #23	Sec24b (ENSMSIG00000030615) #24	Col25a1 (ENSMSIG00000030632) #25	Etnppl (ENSMSIG00000030647) #26	Ostc (ENSMSIG00000030653) #27	Rpl34 (ENSMSIG00000030659) #28	ENSMSIG00000030662 #29	ENSMSIG00000030668 #30	Lef1 (ENSMSIG00000030670) #31	Hadh (ENSMSIG00000030700) #32	Cyp2u1 (ENSMSIG00000030701) #33	Sgms2 (ENSMSIG00000030706) #34	Papss1 (ENSMSIG00000030712) #35
spretus	MODERN SPECIES	12	Zgrf1 (MGP_SPRETEiJ_G0026568)	Neurog2 (MGP_SPRETEiJ_G0026569)	Alpk1 (MGP_SPRETEiJ_G0026570)	Tifa (MGP_SPRETEiJ_G0026571)	Ap1ar (MGP_SPRETEiJ_G0026572)	Fam241a (MGP_SPRETEiJ_G0026573)	Pitx2 (MGP_SPRETEiJ_G0026574)	Enpep (MGP_SPRETEiJ_G0026575)	Elovl6 (MGP_SPRETEiJ_G0026576)	Egf (MGP_SPRETEiJ_G0026577) #16	Lrit3 (MGP_SPRETEiJ_G0026578) #17	Rrh (MGP_SPRETEiJ_G0026579) #18	Gar1 (MGP_SPRETEiJ_G0026580) #19	MGP_SPRETEiJ_G0026581 #20	Pla2g12a (MGP_SPRETEiJ_G0026582) #21	Casp6 (MGP_SPRETEiJ_G0026583) #22	Mcub (MGP_SPRETEiJ_G0026584) #23	Sec24b (MGP_SPRETEiJ_G0026585) #24	Col25a1 (MGP_SPRETEiJ_G0026586) #25	Etnppl (MGP_SPRETEiJ_G0026587) #26	Ostc (MGP_SPRETEiJ_G0026588) #27	Rpl34 (MGP_SPRETEiJ_G0026589) #28	Lef1 (MGP_SPRETEiJ_G0026590) #31	Hadh (MGP_SPRETEiJ_G0026591) #32	Cyp2u1 (MGP_SPRETEiJ_G0026592) #33	Sgms2 (MGP_SPRETEiJ_G0026593) #34	Papss1 (MGP_SPRETEiJ_G0026594) #35	Dkk2 (MGP_SPRETEiJ_G0026595)	Gimd1 (MGP_SPRETEiJ_G0026596)	Aimp1 (MGP_SPRETEiJ_G0026597)	Tbck (MGP_SPRETEiJ_G0026598)
Mouse	MODERN SPECIES	12	Zgrf1 (ENSMUSG00000051278)	Neurog2 (ENSMUSG00000027967)	Alpk1 (ENSMUSG00000028028)	Tifa (ENSMUSG00000046688)	Ap1ar (ENSMUSG00000074238)	Fam241a (ENSMUSG00000050549)	Pitx2 (ENSMUSG00000028023)	Enpep (ENSMUSG00000028024)	Elovl6 (ENSMUSG00000041220)	Egf (ENSMUSG00000028017) #16	Lrit3 (ENSMUSG00000093865) #17	Rrh (ENSMUSG00000028012) #18	Gar1 (ENSMUSG00000028010) #19	Cfi (ENSMUSG00000058952) #20	Pla2g12a (ENSMUSG00000027999) #21	Casp6 (ENSMUSG00000027997) #22	Mcub (ENSMUSG00000027994) #23	Sec24b (ENSMUSG00000001052) #24	Col25a1 (ENSMUSG00000058897) #25	Etnppl (ENSMUSG00000019232) #26	Ostc (ENSMUSG00000041084) #27	Rpl34 (ENSMUSG00000062006) #28	Lef1 (ENSMUSG00000027985) #31	Hadh (ENSMUSG00000027984) #32	Cyp2u1 (ENSMUSG00000027983) #33	Sgms2 (ENSMUSG00000050931) #34	Papss1 (ENSMUSG00000028032) #35	Dkk2 (ENSMUSG00000028031)	Gimd1 (ENSMUSG00000091721)	Aimp1 (ENSMUSG00000028029)	Tbck (ENSMUSG00000028030)
Ryukyu mouse	MODERN SPECIES	12	Zgrf1 (MGP_CAROLIEiJ_G0025615)	Neurog2 (MGP_CAROLIEiJ_G0025616)	Alpk1 (MGP_CAROLIEiJ_G0025617)	Tifa (MGP_CAROLIEiJ_G0025618)	Ap1ar (MGP_CAROLIEiJ_G0025619)	Fam241a (MGP_CAROLIEiJ_G0025620)	Pitx2 (MGP_CAROLIEiJ_G0025621)	Enpep (MGP_CAROLIEiJ_G0025622)	Elovl6 (MGP_CAROLIEiJ_G0025623)	Egf (MGP_CAROLIEiJ_G0025624) #16	Lrit3 (MGP_CAROLIEiJ_G0025625) #17	Rrh (MGP_CAROLIEiJ_G0025626) #18	Gar1 (MGP_CAROLIEiJ_G0025627) #19	Cfi (MGP_CAROLIEiJ_G0025628) #20	Pla2g12a (MGP_CAROLIEiJ_G0025629) #21	Casp6 (MGP_CAROLIEiJ_G0025630) #22	Mcub (MGP_CAROLIEiJ_G0025631) #23	Sec24b (MGP_CAROLIEiJ_G0025632) #24	Col25a1 (MGP_CAROLIEiJ_G0025633) #25	Etnppl (MGP_CAROLIEiJ_G0025634) #26	Ostc (MGP_CAROLIEiJ_G0025635) #27	Rpl34 (MGP_CAROLIEiJ_G0025636) #28	Lef1 (MGP_CAROLIEiJ_G0025637) #31	Hadh (MGP_CAROLIEiJ_G0025638) #32	Cyp2u1 (MGP_CAROLIEiJ_G0025639) #33	Sgms2 (MGP_CAROLIEiJ_G0025640) #34	Papss1 (MGP_CAROLIEiJ_G0025641) #35	Dkk2 (MGP_CAROLIEiJ_G0025642)	Gimd1 (MGP_CAROLIEiJ_G0025643)	Aimp1 (MGP_CAROLIEiJ_G0025644)	Tbck (MGP_CAROLIEiJ_G0025645)
Shrew mouse	MODERN SPECIES	17	Alpk1 (MGP_PahariEiJ_G0027064)	Tifa (MGP_PahariEiJ_G0027065)	Ap1ar (MGP_PahariEiJ_G0027066)	Fam241a (MGP_PahariEiJ_G0027067)	Pitx2 (MGP_PahariEiJ_G0027068)	Enpep (MGP_PahariEiJ_G0027069)	MGP_PahariEiJ_G0027070	MGP_PahariEiJ_G0027071	Elovl6 (MGP_PahariEiJ_G0027072)	Egf (MGP_PahariEiJ_G0027073) #16	Lrit3 (MGP_PahariEiJ_G0027074) #17	Rrh (MGP_PahariEiJ_G0027075) #18	Gar1 (MGP_PahariEiJ_G0027076) #19	Cfi (MGP_PahariEiJ_G0027077) #20	Pla2g12a (MGP_PahariEiJ_G0027078) #21	Casp6 (MGP_PahariEiJ_G0027079) #22	Mcub (MGP_PahariEiJ_G0027080) #23	Sec24b (MGP_PahariEiJ_G0027081) #24	Col25a1 (MGP_PahariEiJ_G0027082) #25	Etnppl (MGP_PahariEiJ_G0027083) #26	Ostc (MGP_PahariEiJ_G0027084) #27	Rpl34 (MGP_PahariEiJ_G0027085) ##28	Lef1 (MGP_PahariEiJ_G0027086) #31	Hadh (MGP_PahariEiJ_G0027087) #32	Cyp2u1 (MGP_PahariEiJ_G0027088) #33	Sgms2 (MGP_PahariEiJ_G0027089) #34	Papss1 (MGP_PahariEiJ_G0027090) #35	Dkk2 (MGP_PahariEiJ_G0027091)	Gimd1 (MGP_PahariEiJ_G0027092)	Aimp1 (MGP_PahariEiJ_G0027093)	Tbck (MGP_PahariEiJ_G0027094)
Rat	MODERN SPECIES	11	Tifa (ENSRNOG00000010941)	Ap1ar (ENSRNOG00000024492)	Fam241a (ENSRNOG00000010875)	LOC108350287 (ENSRNOG00000062474)	Pitx2 (ENSRNOG00000010681)	Enpep (ENSRNOG00000051854)	Dcm5 (ENSRNOG00000048459)	AABR07034008.1 (ENSRNOG00000001601)	Elovl6 (ENSRNOG00000048949)	Egf (ENSRNOG00000053979) #16	Lrit3 (ENSRNOG00000061097) #17	Rrh (ENSRNOG00000053349) #18	Gar1 (ENSRNOG00000061146) #19	Cfi (ENSRNOG00000053400) #20	Pla2g12a (ENSRNOG00000057470) #21	Casp6 (ENSRNOG00000052613) #22	Mcub (ENSRNOG00000009433) #23	Sec24b (ENSRNOG00000023373) #24	Col25a1 (ENSRNOG00000050706) #25	Etnppl (ENSRNOG00000045743) #26	Ostc (ENSRNOG00000023322) #27	Rpl34 (ENSRNOG00000016387) ##28	LOC108350290 (ENSRNOG00000069431)	AABR07013412.1 (ENSRNOG00000055035) #30	Lef1 (ENSRNOG00000010121) #31	Hadh (ENSRNOG00000010697) #32	Cyp2u1 (ENSRNOG00000011053) #33	Sgms2 (ENSRNOG00000011284) #34	Papss1 (ENSRNOG00000011311) #35	Dkk2 (ENSRNOG00000011360)	ENSRNOG00000066474