Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00390000001986 #8	ENSGT00940000161100 #9	ENSGT00390000002748 #10	ENSGT00390000016319 #11	ENSGT00390000005702	ENSGT00940000161496 #12	ENSGT00940000162716	ENSGT00940000160881 #14	ENSGT00940000156204 #15	ENSGT00940000160021 #16	ENSGT00940000156469 #17	ENSGT00940000162646 #18	ENSGT00940000160676 #19	ENSGT00940000153657.B #20	ENSGT00940000159100 #21	ENSGT00940000159496 #22	ENSGT00940000154415.`b #23	ENSGT00390000003210 #24	ENSGT00390000000707 #25	ENSGT00940000158339 #26	ENSGT00550000074924 #27	ENSGT00940000160924 #28	ENSGT00900000141269 #29	ENSGT00390000009774 #30	ENSGT00950000182890.B.b.i.a #33	ENSGT00940000162928.k #34	ENSGT00940000162928.l #35	ENSGT00940000161007 #36	ENSGT00390000018560.a.b #37	ENSGT00940000159697	ENSGT00940000153062.A.a.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00940000155110 #7	ENSGT00390000001986 #8	ENSGT00940000161100 #9	ENSGT00390000002748 #10	ENSGT00390000016319 #11	ENSGT00390000005702	ENSGT00940000161496 #12	ENSGT00940000160881 #14	ENSGT00940000156204 #15	ENSGT00940000160021 #16	ENSGT00940000156469 #17	ENSGT00940000162646 #18	ENSGT00940000160676 #19	ENSGT00940000153657.B #20	ENSGT00940000159100 #21	ENSGT00940000159496 #22	ENSGT00940000154415.`b #23	ENSGT00390000003210 #24	ENSGT00390000000707 #25	ENSGT00940000158339 #26	ENSGT00550000074924 #27	ENSGT00940000160924 #28	ENSGT00900000141269 #29	ENSGT00390000009774 #30	ENSGT00940000161431 #31	ENSGT00940000159953.C #32	ENSGT00950000182890.B.b.i.a #33	ENSGT00940000162928.k #34	ENSGT00940000162928.l #35	ENSGT00940000161007 #36	ENSGT00390000018560.a.b #37
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00390000006265.a	ENSGT00940000155110 #7	ENSGT00390000001986 #8	ENSGT00940000161100 #9	ENSGT00390000002748 #10	ENSGT00390000016319 #11	ENSGT00940000161496 #12	ENSGT00940000160881 #14	ENSGT00940000156204 #15	ENSGT00940000160021 #16	ENSGT00940000156469 #17	ENSGT00940000162646 #18	ENSGT00940000160676 #19	ENSGT00940000153657.B #20	ENSGT00940000159100 #21	ENSGT00940000159496 #22	ENSGT00940000154415.`b #23	ENSGT00390000003210 #24	ENSGT00390000000707 #25	ENSGT00940000158339 #26	ENSGT00550000074924 #27	ENSGT00940000160924 #28	ENSGT00900000141269 #29	ENSGT00390000009774 #30	ENSGT00940000161431 #31	ENSGT00940000159953.C #32	ENSGT00950000182890.B.b.i.a #33	ENSGT00940000162928.k #34	ENSGT00940000162928.l #35	ENSGT00940000161007 #36	ENSGT00390000018560.a.b #37
Long-tailed chinchilla	MODERN SPECIES	175	ARHGAP33 (ENSCLAG00000015653) #7	PROSER3 (ENSCLAG00000011579) #8	HSPB6 (ENSCLAG00000010884) #9	LIN37 (ENSCLAG00000011722) #10	PSENEN (ENSCLAG00000014972) #11	KMT2B (ENSCLAG00000012114) #12	ENSCLAG00000014824 #13	UPK1A (ENSCLAG00000013579) #14	COX6B1 (ENSCLAG00000014823) #15	LRP3 (ENSCLAG00000011669) #16	SLC7A10 (ENSCLAG00000015288) #17	CEBPA (ENSCLAG00000010794) #18	CEBPG (ENSCLAG00000011142) #19	PEPD (ENSCLAG00000013269) #20	CHST8 (ENSCLAG00000014258) #21	KCTD15 (ENSCLAG00000013292) #22	ENSCLAG00000012837 #23	GARRE1 (ENSCLAG00000015049) #24	GPI (ENSCLAG00000015986) #25	PDCD2L (ENSCLAG00000015773) #26	UBA2 (ENSCLAG00000014260) #27	WTIP (ENSCLAG00000011080) #28	ENSCLAG00000011327 #29	ENSCLAG00000013337 #30	ENSCLAG00000015812 #31	ZNF599 (ENSCLAG00000015514) #32	ENSCLAG00000012457 #33	ENSCLAG00000015294 #34	ENSCLAG00000014971 #35	GRAMD1A (ENSCLAG00000016126) #36	SCN1B (ENSCLAG00000014191) #37
Degu	MODERN SPECIES	124	PRODH2 (ENSODEG00000014603)	ARHGAP33 (ENSODEG00000015228) #7	ENSODEG00000015182 #8	HSPB6 (ENSODEG00000016136) #9	LIN37 (ENSODEG00000015303) #10	PSENEN (ENSODEG00000015490) #11	KMT2B (ENSODEG00000014424) #12	ENSODEG00000014837 #13	UPK1A (ENSODEG00000014934) #14	COX6B1 (ENSODEG00000014806) #15	ENSODEG00000020284	LRP3 (ENSODEG00000015710) #16	SLC7A10 (ENSODEG00000014633) #17	PEPD (ENSODEG00000014789) #20	CHST8 (ENSODEG00000014339) #21	KCTD15 (ENSODEG00000014330) #22	ENSODEG00000020231	ENSODEG00000020314	LSM14A (ENSODEG00000014352) #23	GARRE1 (ENSODEG00000014705) #24	GPI (ENSODEG00000014778) #25	PDCD2L (ENSODEG00000016213) #26	ENSODEG00000015301	WTIP (ENSODEG00000015801) #28	ENSODEG00000015943 #30	ENSODEG00000015444	ENSODEG00000014251 #36	SCN1B (ENSODEG00000015355) #37	HPN (ENSODEG00000014955)	FXYD3 (ENSODEG00000014504)	LGI4 (ENSODEG00000014287)
Guinea pig	MODERN SPECIES	52	ENSCPOG00000033069	ARHGAP33 (ENSCPOG00000019450) #7	HSPB6 (ENSCPOG00000032854) #9	LIN37 (ENSCPOG00000003730) #10	PSENEN (ENSCPOG00000035743) #11	IGFLR1 (ENSCPOG00000003725)	KMT2B (ENSCPOG00000003718) #12	ENSCPOG00000030326 #13	UPK1A (ENSCPOG00000003519) #14	COX6B1 (ENSCPOG00000040146) #15	LRP3 (ENSCPOG00000013712) #16	SLC7A10 (ENSCPOG00000040440) #17	ENSCPOG00000023297 #18	PEPD (ENSCPOG00000014494) #20	CHST8 (ENSCPOG00000000793) #21	KCTD15 (ENSCPOG00000040268) #22	LSM14A (ENSCPOG00000025803) #23	GARRE1 (ENSCPOG00000027055) #24	GPI (ENSCPOG00000008562) #25	PDCD2L (ENSCPOG00000006016) #26	UBA2 (ENSCPOG00000010543) #27	WTIP (ENSCPOG00000036934) #28	ENSCPOG00000030617	ZNF8 (ENSCPOG00000031529)	RPS5 (ENSCPOG00000023995)	ZNF584 (ENSCPOG00000031428)	ENSCPOG00000021589	ENSCPOG00000039862	ZNF446 (ENSCPOG00000032178)	SLC27A5 (ENSCPOG00000012620)	ZBTB45 (ENSCPOG00000021221)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	20	PSENEN (ENSHGLG00000045078) #11	ENSHGLG00000018714	KMT2B (ENSHGLG00000015062) #12	ENSHGLG00000050908	ZBTB32 (ENSHGLG00000015654)	UPK1A (ENSHGLG00000015606) #14	ENSHGLG00000015135 #15	ENSHGLG00000015213 #16	ENSHGLG00000015188 #17	ENSHGLG00000013022	CEBPA (ENSHGLG00000043594) #18	ENSHGLG00000004838	ENSHGLG00000041808 #19	PEPD (ENSHGLG00000011240) #20	CHST8 (ENSHGLG00000008720) #21	KCTD15 (ENSHGLG00000034885) #22	ENSHGLG00000042419	ENSHGLG00000007321 #23	GARRE1 (ENSHGLG00000013898) #24	Gpi (ENSHGLG00000015058) #25	PDCD2L (ENSHGLG00000019039) #26	UBA2 (ENSHGLG00000013209) #27	WTIP (ENSHGLG00000044055) #28	ENSHGLG00000013473 #30	ENSHGLG00000037952	ENSHGLG00000041394 ##33	ENSHGLG00000044339	ENSHGLG00000009826 #31	ZNF599 (ENSHGLG00000047822) #32	ENSHGLG00000013668	ENSHGLG00000006199
Naked mole-rat female	MODERN SPECIES	6	AP5S1 (ENSHGLG00000046927)	CDC25B (ENSHGLG00000015547)	CENPB (ENSHGLG00000021323)	SPEF1 (ENSHGLG00000049284)	ENSHGLG00000047456	ENSHGLG00000050487	ENSHGLG00000031960	ENSHGLG00000045238	ENSHGLG00000015424	ENSHGLG00000016120	ENSHGLG00000014779	ENSHGLG00000048409	ENSHGLG00000049223	ENSHGLG00000045996	ENSHGLG00000016048	ENSHGLG00000050095 #22	ENSHGLG00000033820	ITPA (ENSHGLG00000035385)	ENSHGLG00000039750	ENSHGLG00000042720	ENSHGLG00000049775	ENSHGLG00000036143	MRPS26 (ENSHGLG00000041915)	GNRH2 (ENSHGLG00000048134)	PTPRA (ENSHGLG00000013139)	ENSHGLG00000015648	VPS16 (ENSHGLG00000009537)	PCED1A (ENSHGLG00000007166)	TMEM239 (ENSHGLG00000006404)	CPXM1 (ENSHGLG00000009390)	ENSHGLG00000005535