Gnathostomata ANCESTRAL SPECIES 87 ENSGT00940000158677 ENSGT00940000158899 #18 ENSGT00390000005178 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000161832.b ENSGT00940000158225 #34 ENSGT00940000161249 ENSGT00940000155867 ENSGT00440000033504.B ENSGT00940000156857 Euteleostomi ANCESTRAL SPECIES 49 ENSGT00940000166645 ENSGT00940000158899 #18 ENSGT00390000005178 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000161832.b ENSGT00940000158225 #34 ENSGT00940000161249 ENSGT00940000155867 ENSGT00940000164603 ENSGT00440000033504.B ENSGT00940000156857 Actinopterygii ANCESTRAL SPECIES 44 ENSGT01050000244951.a.b.a.b #17 ENSGT00390000005178.a ENSGT00940000153962.b #16 ENSGT00530000063825.A.c ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000154709.a.a #19 ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000161832.b Neopterygii ANCESTRAL SPECIES 58 ENSGT00390000005178.a ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000154709.a.a #19 ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 Osteoglossocephalai ANCESTRAL SPECIES 226 ENSGT01050000244951.a.b.a.b #17 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000154709.a.a #19 ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 620 ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 Euteleosteomorpha ANCESTRAL SPECIES 30 ENSGT00940000165344 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 Acanthomorphata ANCESTRAL SPECIES 47 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT00940000158003 ENSGT00950000183052.b.c.b.a ENSGT00940000163513 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 Euacanthomorphacea ANCESTRAL SPECIES 18 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Percomorphaceae ANCESTRAL SPECIES 19 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00940000175478 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Percomorphaceae_B ANCESTRAL SPECIES 21 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Percomorphaceae_C ANCESTRAL SPECIES 22 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000172707.b ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 Eupercaria ANCESTRAL SPECIES 21 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Eupecaria_A ANCESTRAL SPECIES 21 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Eupecaria_B ANCESTRAL SPECIES 21 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Perciformes ANCESTRAL SPECIES 18 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Cottioidei ANCESTRAL SPECIES 19 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Stickleback MODERN SPECIES 3 ENSGACG00000019993 #7 ppfia2 (ENSGACG00000019995) #8 ACSS3 (ENSGACG00000019999) #9 lin7a (ENSGACG00000020007) #10 myf6 (ENSGACG00000020008) #11 rps16 (ENSGACG00000020009) #12 ppp1r12a (ENSGACG00000020012) #13 pawr (ENSGACG00000020015) #14 syt1a (ENSGACG00000020017) #15 cyb5r3 (ENSGACG00000020019) #16 ENSGACG00000020026 #17 syt10 (ENSGACG00000020031) #18 tnnt2c (ENSGACG00000020034) #19 ENSGACG00000020036 #20 cry1a (ENSGACG00000020037) #21 btbd11a (ENSGACG00000020040) #22 ENSGACG00000020041 #23 igf1 (ENSGACG00000020042) #24 ENSGACG00000020044 #25 parpbp (ENSGACG00000020045) #26 nup37 (ENSGACG00000020046) #27 th2 (ENSGACG00000020047) #28 ascl1a (ENSGACG00000020048) #29 itfg2 (ENSGACG00000020049) #30 nrip2 (ENSGACG00000020050) #31 klhl42 (ENSGACG00000020051) #32 elapor2b (ENSGACG00000020052) #33 tspan9b (ENSGACG00000020053) #34 amdhd1 (ENSGACG00000020054) #35 snrpf (ENSGACG00000020055) #36 ntn4 (ENSGACG00000020056) #37 Lumpfish MODERN SPECIES 15 ENSCLMG00005016471 ENSCLMG00005016472 ENSCLMG00005016474 ENSCLMG00005016498 mcat (ENSCLMG00005016500) ttll1 (ENSCLMG00005016502) pacsin2 (ENSCLMG00005016503) arfgap3 (ENSCLMG00005016508) ENSCLMG00005016527 ENSCLMG00005016528 uhrf1bp1l (ENSCLMG00005016536) anks1b (ENSCLMG00005016584) apaf1 (ENSCLMG00005016672) ENSCLMG00005018160 cry1a (ENSCLMG00005018166) #21 ABTB3 (ENSCLMG00005018797) #22 ENSCLMG00005018798 ENSCLMG00005018799 ENSCLMG00005018800 igf1 (ENSCLMG00005018801) #24 ENSCLMG00005018803 #25 parpbp (ENSCLMG00005018804) #26 nup37 (ENSCLMG00005018805) #27 th2 (ENSCLMG00005018807) #28 pah (ENSCLMG00005018810) ##28 ascl1a (ENSCLMG00005018865) #29 itfg2 (ENSCLMG00005018867) #30 nrip2 (ENSCLMG00005018870) #31 klhl42 (ENSCLMG00005018871) #32 elapor2b (ENSCLMG00005018872) #33 tspan9b (ENSCLMG00005018873) #34 Perciformes_a ANCESTRAL SPECIES 19 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Channel bull blenny MODERN SPECIES 15 SFMBT2 (ENSCGOG00000016039) prkcq (ENSCGOG00000016167) TBC1D30 (ENSCGOG00000018496) gnsa (ENSCGOG00000018524) zgc:194209 (ENSCGOG00000018955) RASSF3 (ENSCGOG00000018958) ENSCGOG00000018962 ENSCGOG00000018998 creb3l2 (ENSCGOG00000020856) ssbp1 (ENSCGOG00000020859) ENSCGOG00000020863 acot14 (ENSCGOG00000020865) ENSCGOG00000020908 CD9 (ENSCGOG00000020917) MTERF2 (ENSCGOG00000020933) #20 btbd11a (ENSCGOG00000020950) #22 ENSCGOG00000021090 igf1 (ENSCGOG00000021110) #24 pmch (ENSCGOG00000021359) parpbp (ENSCGOG00000021360) #26 nup37 (ENSCGOG00000021365) #27 th2 (ENSCGOG00000021420) #28 pah (ENSCGOG00000021599) ##28 ascl1a (ENSCGOG00000022495) #29 itfg2 (ENSCGOG00000022503) #30 nrip2 (ENSCGOG00000022518) #31 klhl42 (ENSCGOG00000022519) #32 elapor2b (ENSCGOG00000022556) #33 tspan9b (ENSCGOG00000022823) #34 amdhd1 (ENSCGOG00000022844) #35 snrpf (ENSCGOG00000022846) #36 Pike perch MODERN SPECIES 28 ppfia2 (ENSSLUG00000001812) #8 ACSS3 (ENSSLUG00000001953) #9 lin7a (ENSSLUG00000002301) #10 Myf5 (ENSSLUG00000002308) ##11 myf6 (ENSSLUG00000002312) #11 rps16 (ENSSLUG00000002321) #12 ppp1r12a (ENSSLUG00000002356) #13 pawr (ENSSLUG00000002488) #14 syt1a (ENSSLUG00000002503) #15 cyb5r3 (ENSSLUG00000002598) #16 ENSSLUG00000002793 #17 ENSSLUG00000003558 #18 syt10 (ENSSLUG00000003569) #18 MTERF2 (ENSSLUG00000003583) #20 cry1a (ENSSLUG00000003675) #21 btbd11a (ENSSLUG00000004616) #22 ENSSLUG00000004758 #23 IGF-I (ENSSLUG00000004805) #24 pmch (ENSSLUG00000005227) parpbp (ENSSLUG00000005238) #26 nup37 (ENSSLUG00000005270) #27 th2 (ENSSLUG00000005335) #28 pah (ENSSLUG00000005452) ##28 ascl1a (ENSSLUG00000007018) #29 itfg2 (ENSSLUG00000007037) #30 nrip2 (ENSSLUG00000007092) #31 klhl42 (ENSSLUG00000007097) #32 elapor2b (ENSSLUG00000007126) #33 tspan9b (ENSSLUG00000007211) #34 amdhd1 (ENSSLUG00000007223) #35 snrpf (ENSSLUG00000007230) #36 Eupecaria_C ANCESTRAL SPECIES 18 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT00400000022326.b.a.b.a.a ENSGT01100000263491.a.b.a.a.a.a.b.s.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 Eupercaria_incertae_sedis ANCESTRAL SPECIES 22 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT00400000022326.b.a.b.a.a ENSGT01100000263491.a.b.a.a.a.a.b.s.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 European seabass MODERN SPECIES 23 kin (ENSDLAG00005025075) itih2 (ENSDLAG00005024772) ITIH5 (ENSDLAG00005024751) ENSDLAG00005024745 METAP2 (ENSDLAG00005024721) vezt (ENSDLAG00005024711) fgd6 (ENSDLAG00005024698) ndufa12 (ENSDLAG00005024691) TMCC3 (ENSDLAG00005034671) ENSDLAG00005024687 ENSDLAG00005024264 ENSDLAG00005024007 ENSDLAG00005028222 ENSDLAG00005023981 #20 ENSDLAG00005023868 #21 ENSDLAG00005023668 #22 ENSDLAG00005027813 ENSDLAG00005026892 igf1 (ENSDLAG00005023625) #24 pmch (ENSDLAG00005023620) parpbp (ENSDLAG00005023617) #26 NUP37 (ENSDLAG00005023603) #27 th2 (ENSDLAG00005023520) #28 pah (ENSDLAG00005022732) ##28 ENSDLAG00005022698 #29 ENSDLAG00005027036 #30 ENSDLAG00005022693 #32 ENSDLAG00005022472 #33 ENSDLAG00005022457 #34 ENSDLAG00005022452 #19 ENSDLAG00005022430 #18 Large yellow croaker MODERN SPECIES 491 myf5 (ENSLCRG00005018093) ##11 myf6 (ENSLCRG00005018091) #11 rps16 (ENSLCRG00005018085) #12 ppp1r12a (ENSLCRG00005018071) #13 ENSLCRG00005018065 pawr (ENSLCRG00005018063) #14 ENSLCRG00005018062 ENSLCRG00005018060 syt1a (ENSLCRG00005018056) #15 cyb5r3 (ENSLCRG00005017871) #16 ENSLCRG00005017806 #17 syt10 (ENSLCRG00005017801) #18 tnnt2c (ENSLCRG00005017799) #19 MTERF2 (ENSLCRG00005017798) #20 cry1a (ENSLCRG00005017690) #21 btbd11a (ENSLCRG00005017547) #22 ENSLCRG00005017539 igf1 (ENSLCRG00005017409) #24 ENSLCRG00005017401 #25 parpbp (ENSLCRG00005017399) #26 nup37 (ENSLCRG00005017388) #27 th2 (ENSLCRG00005017198) #28 pah (ENSLCRG00005015533) ##28 ascl1a (ENSLCRG00005015517) #29 nrip2 (ENSLCRG00005015516) #31 itfg2 (ENSLCRG00005015463) #30 klhl42 (ENSLCRG00005015458) #32 elapor2b (ENSLCRG00005015142) #33 tspan9b (ENSLCRG00005015133) #34 amdhd1 (ENSLCRG00005015131) #35 snrpf (ENSLCRG00005015130) #36 Gilthead seabream MODERN SPECIES 5 ppfia2 (ENSSAUG00010017685) #8 ACSS3 (ENSSAUG00010019831) #9 lin7a (ENSSAUG00010020149) #10 myf5 (ENSSAUG00010020150) ##11 myf6 (ENSSAUG00010020152) #11 rps16 (ENSSAUG00010020153) #12 ppp1r12a (ENSSAUG00010020166) #13 pawr (ENSSAUG00010020373) #14 syt1a (ENSSAUG00010020377) #15 cyb5r3 (ENSSAUG00010020421) #16 ENSSAUG00010020501 #17 syt10 (ENSSAUG00010012236) #18 tnnt2c (ENSSAUG00010012240) #19 ENSSAUG00010012243 #20 cry1a (ENSSAUG00010012268) #21 btbd11a (ENSSAUG00010014766) #22 ENSSAUG00010015101 igf1 (ENSSAUG00010015109) #24 pmch (ENSSAUG00010015234) parpbp (ENSSAUG00010015235) #26 nup37 (ENSSAUG00010015237) #27 th2 (ENSSAUG00010015244) #28 pah (ENSSAUG00010015550) ##28 ascl1a (ENSSAUG00010017839) #29 ascl1a (ENSSAUG00010017842) #29 itfg2 (ENSSAUG00010017851) #30 nrip2 (ENSSAUG00010017853) #31 klhl42 (ENSSAUG00010017856) #32 elapor2b (ENSSAUG00010017867) #33 ENSSAUG00010018116 ENSSAUG00010018119 Ballan wrasse MODERN SPECIES 262 elapor2b (ENSLBEG00000008923) #33 klhl42 (ENSLBEG00000008995) #32 nrip2 (ENSLBEG00000009030) #31 itfg2 (ENSLBEG00000009067) #30 ascl1a (ENSLBEG00000009122) #29 pah (ENSLBEG00000009148) ##28 th2 (ENSLBEG00000009302) #28 nup37 (ENSLBEG00000009795) #27 parpbp (ENSLBEG00000009853) #26 ENSLBEG00000009881 #25 igf1 (ENSLBEG00000009904) #24 ENSLBEG00000009921 ENSLBEG00000009958 #23 ENSLBEG00000010011 #20 cry1a (ENSLBEG00000010050) #21 btbd11a (ENSLBEG00000010130) #22 ENSLBEG00000010191 ccnd2b (ENSLBEG00000010215) tigarb (ENSLBEG00000010244) fgf23 (ENSLBEG00000010263) fgf6b (ENSLBEG00000010310) rad51ap1 (ENSLBEG00000010326) ENSLBEG00000010355 ENSLBEG00000010577 ADA2 (ENSLBEG00000010725) atp6v1e1b (ENSLBEG00000010761) ENSLBEG00000010784 spic (ENSLBEG00000010806) ENSLBEG00000010853 mybpc1 (ENSLBEG00000011012) chpt1 (ENSLBEG00000011369) Tetraodontidae ANCESTRAL SPECIES 17 ENSGT00940000158094 ENSGT00940000157659 ENSGT00390000002796 ENSGT01010000222336.b.a.b.a ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406.d #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Fugu MODERN SPECIES 9 gnsa (ENSTRUG00000012451) RASSF3 (ENSTRUG00000012661) creb3l2 (ENSTRUG00000013114) ssbp1 (ENSTRUG00000013183) acot14 (ENSTRUG00000013235) rps16 (ENSTRUG00000028064) #12 ppp1r12a (ENSTRUG00000013358) #13 pawr (ENSTRUG00000013694) #14 syt1a (ENSTRUG00000013727) #15 cyb5r3 (ENSTRUG00000020838) #16 ENSTRUG00000013873 #17 syt10 (ENSTRUG00000013939) #18 tnnt2c (ENSTRUG00000014014) #19 MTERF2 (ENSTRUG00000014030) #20 cry1a (ENSTRUG00000014032) #21 btbd11a (ENSTRUG00000014167) #22 ENSTRUG00000025881 igf1 (ENSTRUG00000022135) #24 pmch (ENSTRUG00000014356) parpbp (ENSTRUG00000014361) #26 nup37 (ENSTRUG00000014428) #27 th2 (ENSTRUG00000014467) #28 pah (ENSTRUG00000014530) ##28 ascl1a (ENSTRUG00000012801) #29 itfg2 (ENSTRUG00000014649) #30 nrip2 (ENSTRUG00000023306) #31 klhl42 (ENSTRUG00000014743) #32 elapor2b (ENSTRUG00000014753) #33 ENSTRUG00000027986 tspan9b (ENSTRUG00000014879) #34 amdhd1 (ENSTRUG00000014921) #35 Tetraodon MODERN SPECIES 11 RASSF3 (ENSTNIG00000012647) ENSTNIG00000012648 creb3l2 (ENSTNIG00000012649) acot14 (ENSTNIG00000012650) rps16 (ENSTNIG00000012651) #12 ppp1r12a (ENSTNIG00000012652) #13 pawr (ENSTNIG00000012653) #14 ENSTNIG00000012654 #14 syt1a (ENSTNIG00000012655) #15 cyb5r3 (ENSTNIG00000012656) #16 ENSTNIG00000012657 #17 syt10 (ENSTNIG00000012658) #18 tnnt2c (ENSTNIG00000012659) #19 cry1a (ENSTNIG00000012660) #21 ENSTNIG00000012661 btbd11a (ENSTNIG00000012662) #22 ENSTNIG00000000656 igf1 (ENSTNIG00000012663) #24 pmch (ENSTNIG00000001324) parpbp (ENSTNIG00000012664) #26 nup37 (ENSTNIG00000012665) #27 th2 (ENSTNIG00000012666) #28 pah (ENSTNIG00000012667) ##28 klhl42 (ENSTNIG00000012668) #32 elapor2b (ENSTNIG00000012669) #33 tspan9b (ENSTNIG00000012670) #34 amdhd1 (ENSTNIG00000012671) #35 snrpf (ENSTNIG00000012672) #36 ntn4 (ENSTNIG00000012673) #37 usp44 (ENSTNIG00000012674) metap2b (ENSTNIG00000012675) Percomorphaceae_D ANCESTRAL SPECIES 22 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Anabantaria ANCESTRAL SPECIES 21 ENSGT00940000166093 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT00950000183169.A.a.a ENSGT00940000163513 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 Anabantoidei ANCESTRAL SPECIES 21 ENSGT00940000157779 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT00950000183169.A.a.a ENSGT00940000163513 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 Climbing perch MODERN SPECIES 14 ppfia2 (ENSATEG00000023284) #8 ACSS3 (ENSATEG00000023260) #9 lin7a (ENSATEG00000023252) #10 myf5 (ENSATEG00000023249) ##11 myf6 (ENSATEG00000023242) #11 ENSATEG00000023236 #12 ENSATEG00000023226 #13 ENSATEG00000023210 #14 ENSATEG00000023170 #15 ENSATEG00000023152 #16 ENSATEG00000023121 #17 ENSATEG00000026602 #18 ENSATEG00000023107 #18 tnnt2c (ENSATEG00000023096) #19 ENSATEG00000023083 #21 btbd11a (ENSATEG00000023064) #22 ENSATEG00000029039 ENSATEG00000023044 igf1 (ENSATEG00000023026) #24 pmch (ENSATEG00000022998) parpbp (ENSATEG00000022956) #26 NUP37 (ENSATEG00000022933) #27 th2 (ENSATEG00000022864) #28 pah (ENSATEG00000022831) ##28 ENSATEG00000022825 #29 itfg2 (ENSATEG00000022806) #30 ENSATEG00000022782 #31 klhl42 (ENSATEG00000022766) #32 ENSATEG00000022701 #33 ENSATEG00000022678 #34 amdhd1 (ENSATEG00000022667) #35 Siamese fighting fish MODERN SPECIES 20 cpm (ENSBSLG00000010758) dclre1c (ENSBSLG00000010562) ppfia2 (ENSBSLG00000009838) #8 ACSS3 (ENSBSLG00000009122) #9 LIN7B (ENSBSLG00000009073) ##10 myf5 (ENSBSLG00000008998) ##11 myf6 (ENSBSLG00000008938) #11 rps16 (ENSBSLG00000008793) #12 ppp1r12a (ENSBSLG00000007997) #13 pawr (ENSBSLG00000007919) #14 syt1a (ENSBSLG00000007799) #15 cyb5r3 (ENSBSLG00000007400) #16 ENSBSLG00000007321 #17 syt10 (ENSBSLG00000007302) #18 cry1a (ENSBSLG00000007173) #21 btbd11a (ENSBSLG00000006250) #22 ENSBSLG00000006232 igf1 (ENSBSLG00000006224) #24 pmch (ENSBSLG00000006216) parpbp (ENSBSLG00000006209) #26 nup37 (ENSBSLG00000006190) #27 th2 (ENSBSLG00000006132) #28 pah (ENSBSLG00000006111) ##28 ascl1a (ENSBSLG00000006101) #29 itfg2 (ENSBSLG00000006095) #30 nrip2 (ENSBSLG00000006093) #31 klhl42 (ENSBSLG00000006090) #32 elapor2b (ENSBSLG00000006020) #33 tspan9b (ENSBSLG00000006012) #34 amdhd1 (ENSBSLG00000005996) #35 NTN4 (ENSBSLG00000005981) #37 Zig-zag eel MODERN SPECIES 15 ppfia2 (ENSMAMG00000014966) #8 ACSS3 (ENSMAMG00000015114) #9 lin7a (ENSMAMG00000015174) #10 myf5 (ENSMAMG00000015202) ##11 myf6 (ENSMAMG00000015217) #11 ENSMAMG00000015224 #12 ppp1r12a (ENSMAMG00000015240) #13 ENSMAMG00000015337 #14 ENSMAMG00000015373 #15 ENSMAMG00000015393 #16 ENSMAMG00000015433 #17 ENSMAMG00000024270 #18 ENSMAMG00000015509 #18 tnnt2c (ENSMAMG00000015546) #19 ENSMAMG00000015580 #21 btbd11a (ENSMAMG00000015616) #22 ENSMAMG00000015670 igf1 (ENSMAMG00000015704) #24 pmch (ENSMAMG00000015727) parpbp (ENSMAMG00000016003) #26 nup37 (ENSMAMG00000016017) #27 th2 (ENSMAMG00000016040) #28 pah (ENSMAMG00000016220) ##28 ENSMAMG00000016256 #29 itfg2 (ENSMAMG00000016273) #30 ENSMAMG00000016311 #31 klhl42 (ENSMAMG00000016338) #32 ENSMAMG00000016348 #33 ENSMAMG00000026753 #34 amdhd1 (ENSMAMG00000016384) #35 SNRPF (ENSMAMG00000016593) #36 Carangaria ANCESTRAL SPECIES 22 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Pleuronectoidei ANCESTRAL SPECIES 16 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Tongue sole MODERN SPECIES 18 calua (ENSCSEG00000005947) ENSCSEG00000005945 ENSCSEG00000005934 creb3l2 (ENSCSEG00000005930) ssbp1 (ENSCSEG00000005916) ENSCSEG00000005872 eri1 (ENSCSEG00000005863) TMCC3 (ENSCSEG00000005859) ENSCSEG00000004837 fgd6 (ENSCSEG00000004819) vezt (ENSCSEG00000004802) metap2b (ENSCSEG00000004778) usp44 (ENSCSEG00000004765) ntn4 (ENSCSEG00000004754) #37 snrpf (ENSCSEG00000004748) #36 btbd11a (ENSCSEG00000004735) #22 ENSCSEG00000004721 igf1 (ENSCSEG00000004697) #24 ENSCSEG00000004687 #25 parpbp (ENSCSEG00000004674) #26 nup37 (ENSCSEG00000004667) #27 th2 (ENSCSEG00000004662) #28 pah (ENSCSEG00000004644) ##28 ascl1a (ENSCSEG00000004639) #29 ENSCSEG00000004636 nrip2 (ENSCSEG00000004633) #31 klhl42 (ENSCSEG00000004627) #32 elapor2b (ENSCSEG00000004623) #33 tspan9b (ENSCSEG00000004608) #34 amdhd1 (ENSCSEG00000004613) #35 cry1a (ENSCSEG00000004597) #21 Turbot MODERN SPECIES 11 ppfia2 (ENSSMAG00000004417) #8 ACSS3 (ENSSMAG00000004487) #9 lin7a (ENSSMAG00000004519) #10 ENSSMAG00000004633 #13 myf5 (ENSSMAG00000004563) ##11 myf6 (ENSSMAG00000024612) #11 ENSSMAG00000032576 #12 ENSSMAG00000004775 #14 ENSSMAG00000004787 #15 ENSSMAG00000004819 #16 ENSSMAG00000004880 #17 ENSSMAG00000004931 #18 tnnt2c (ENSSMAG00000004942) #19 ENSSMAG00000005003 #20 ENSSMAG00000004964 #21 btbd11a (ENSSMAG00000005012) #22 ENSSMAG00000005081 ENSSMAG00000030625 igf1 (ENSSMAG00000005115) #24 pmch (ENSSMAG00000022672) parpbp (ENSSMAG00000005145) #26 nup37 (ENSSMAG00000005160) #27 th2 (ENSSMAG00000005181) #28 pah (ENSSMAG00000005207) ##28 ENSSMAG00000005248 #29 itfg2 (ENSSMAG00000005257) #30 ENSSMAG00000022137 #31 klhl42 (ENSSMAG00000005334) #32 ENSSMAG00000005360 #33 ENSSMAG00000005457 #34 amdhd1 (ENSSMAG00000005484) #35 Carangaria_A ANCESTRAL SPECIES 21 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Barramundi perch MODERN SPECIES 292 syt10 (ENSLCAG00010027097) #18 tnnt2c (ENSLCAG00010027095) #19 MTERF2 (ENSLCAG00010027093) #20 cry1a (ENSLCAG00010027085) #21 btbd11a (ENSLCAG00010027077) #22 ENSLCAG00010027076 ENSLCAG00010027073 igf1 (ENSLCAG00010027059) #24 pmch (ENSLCAG00010027053) parpbp (ENSLCAG00010027051) #26 nup37 (ENSLCAG00010027047) #27 th2 (ENSLCAG00010027029) #28 pah (ENSLCAG00010026972) ##28 ascl1a (ENSLCAG00010026942) #29 itfg2 (ENSLCAG00010026936) #30 nrip2 (ENSLCAG00010026932) #31 tspan9b (ENSLCAG00010026930) #34 elapor2b (ENSLCAG00010026919) #33 klhl42 (ENSLCAG00010026897) #32 amdhd1 (ENSLCAG00010026896) #35 Seriola ANCESTRAL SPECIES 9 ENSGT01020000230394.e.a.a.a.a.b ENSGT00530000063539.b ENSGT00390000012080 ENSGT00730000111164 ENSGT00530000064318 ENSGT01010000222533 ENSGT00940000157998 ENSGT00390000017998 ENSGT00390000009583 ENSGT00950000182824.a.a.a.a.b ENSGT01050000244882.a.a.a.a.b ENSGT01010000222336.b.a.b.a ENSGT00390000018424 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Greater amberjack MODERN SPECIES 60 plxnb2a.1 (ENSSDUG00000017517) mdm2 (ENSSDUG00000017495) nup107 (ENSSDUG00000017402) slc35e3 (ENSSDUG00000017364) UPF2 (ENSSDUG00000017244) ENSSDUG00000017218 rab3ip (ENSSDUG00000017171) TMEM19 (ENSSDUG00000017135) kics2 (ENSSDUG00000017120) srgap1b (ENSSDUG00000017062) AVPR1A (ENSSDUG00000016871) acot14 (ENSSDUG00000016832) ENSSDUG00000016804 MTERF2 (ENSSDUG00000016802) #20 cry1a (ENSSDUG00000016784) #21 btbd11a (ENSSDUG00000016744) #22 ENSSDUG00000016734 igf1 (ENSSDUG00000016698) #24 pmch (ENSSDUG00000016677) parpbp (ENSSDUG00000016645) #26 nup37 (ENSSDUG00000016615) #27 th2 (ENSSDUG00000016577) #28 pah (ENSSDUG00000016548) ##28 ascl1a (ENSSDUG00000016538) #29 itfg2 (ENSSDUG00000016493) #30 nrip2 (ENSSDUG00000016462) #31 klhl42 (ENSSDUG00000016448) #32 elapor2b (ENSSDUG00000016349) #33 tspan9b (ENSSDUG00000016318) #34 amdhd1 (ENSSDUG00000016290) #35 snrpf (ENSSDUG00000016283) #36 Yellowtail amberjack MODERN SPECIES 2989 srgap1b (ENSSLDG00000004008) AVPR1A (ENSSLDG00000004134) acot14 (ENSSLDG00000004148) ENSSLDG00000004226 cry1a (ENSSLDG00000004294) #21 MTERF2 (ENSSLDG00000004358) #20 btbd11a (ENSSLDG00000004377) #22 ENSSLDG00000004485 igf1 (ENSSLDG00000004529) #24 pmch (ENSSLDG00000004554) parpbp (ENSSLDG00000004566) #26 nup37 (ENSSLDG00000004590) #27 th2 (ENSSLDG00000004650) #28 pah (ENSSLDG00000004715) ##28 ascl1a (ENSSLDG00000004770) #29 itfg2 (ENSSLDG00000004809) #30 nrip2 (ENSSLDG00000004872) #31 klhl42 (ENSSLDG00000004894) #32 elapor2b (ENSSLDG00000004921) #33 tspan9b (ENSSLDG00000004989) #34 amdhd1 (ENSSLDG00000005072) #35 snrpf (ENSSLDG00000005119) #36 Ovalentaria ANCESTRAL SPECIES 22 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Ovalentaria_B ANCESTRAL SPECIES 23 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT00940000172707.b ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Pomacentridae ANCESTRAL SPECIES 59 ENSGT00940000158225.i.a #34 ENSGT00940000154983.c.b #33 ENSGT00940000160124 #32 ENSGT00950000182999.b.a.a #31 ENSGT00390000005378 #30 ENSGT00940000166611 #29 ENSGT00950000182885.B ##28 ENSGT00950000182885.C.b #28 ENSGT00390000010777 #27 ENSGT00390000006088 #26 ENSGT00940000168896 #25 ENSGT00940000159081 #24 ENSGT00840000130048.b ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000154709.a.a #19 ENSGT00940000158899.bb.b #18 ENSGT00940000158899.cb #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00940000155394.i.a #15 ENSGT00390000000406 #14 ENSGT00940000156120.a #13 ENSGT00390000013067.l.l #12 ENSGT00950000182959.a.b.b.a #11 ENSGT00950000182959.a.a ##11 ENSGT00940000153222.a.a #10 ENSGT00940000157479 #9 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000166093 Bicolor damselfish MODERN SPECIES 791 btbd11a (ENSSPAG00000023015) #22 tnnt2c (ENSSPAG00000023033) #19 syt10 (ENSSPAG00000023054) #18 syt10 (ENSSPAG00000023061) #18 ENSSPAG00000023074 #17 cyb5r3 (ENSSPAG00000023109) #16 Pomacentridae_A ANCESTRAL SPECIES 58 ENSGT00940000158225.i.a #34 ENSGT00940000154983.c.b #33 ENSGT00940000160124 #32 ENSGT00950000182999.b.a.a #31 ENSGT00390000005378 #30 ENSGT00940000166611 #29 ENSGT00950000182885.B ##28 ENSGT00950000182885.C.b #28 ENSGT00390000010777 #27 ENSGT00390000006088 #26 ENSGT00940000168896 #25 ENSGT00940000159081 #24 ENSGT00840000130048.b ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000154709.a.a #19 ENSGT00940000158899.cb #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00940000155394.i.a #15 ENSGT00390000000406 #14 ENSGT00940000156120.a #13 ENSGT00390000013067.l.l #12 ENSGT00950000182959.a.b.b.a #11 ENSGT00950000182959.a.a ##11 ENSGT00940000153222.a.a #10 ENSGT00940000157479 #9 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000166093 ENSGT00940000158804 Spiny chromis MODERN SPECIES 1620 ENSAPOG00000019701 #22 tnnt2c (ENSAPOG00000019758) #19 syt10 (ENSAPOG00000019813) #18 ENSAPOG00000019829 Amphiprion ANCESTRAL SPECIES 19 ENSGT00940000158225.i.a #34 ENSGT00940000154983.c.b #33 ENSGT00940000160124 #32 ENSGT00950000182999.b.a.a #31 ENSGT00390000005378 #30 ENSGT00940000166611 #29 ENSGT00950000182885.B ##28 ENSGT00950000182885.C.b #28 ENSGT00390000010777 #27 ENSGT00390000006088 #26 ENSGT00940000168896 #25 ENSGT00940000159081 #24 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000154709.a.a #19 ENSGT00940000158899.cb #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00940000155394.i.a #15 ENSGT00390000000406 #14 ENSGT00940000156120.a #13 ENSGT00390000013067.l.l #12 ENSGT00950000182959.a.b.b.a #11 ENSGT00950000182959.a.a ##11 ENSGT00940000153222.a.a #10 ENSGT00940000157479 #9 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000166093 ENSGT00940000158804 Clown anemonefish MODERN SPECIES 2603 btbd11a (ENSAOCG00000007997) #22 Orange clownfish MODERN SPECIES 13 elapor2b (ENSAPEG00000021953) #33 klhl42 (ENSAPEG00000021941) #32 ENSAPEG00000021936 nrip2 (ENSAPEG00000021926) #31 itfg2 (ENSAPEG00000021902) #30 ascl1a (ENSAPEG00000021889) #29 pah (ENSAPEG00000021861) ##28 th2 (ENSAPEG00000021831) #28 nup37 (ENSAPEG00000021794) #27 parpbp (ENSAPEG00000021705) #26 ENSAPEG00000021659 #25 igf1 (ENSAPEG00000021610) #24 ENSAPEG00000021575 ENSAPEG00000021556 #20 cry1a (ENSAPEG00000021519) #21 btbd11a (ENSAPEG00000021482) #22 tnnt2c (ENSAPEG00000021437) #19 syt10 (ENSAPEG00000021420) #18 ENSAPEG00000021411 #17 cyb5r3 (ENSAPEG00000021367) #16 syt1a (ENSAPEG00000021322) #15 pawr (ENSAPEG00000021309) #14 ppp1r12a (ENSAPEG00000021244) #13 rps16 (ENSAPEG00000021214) #12 myf6 (ENSAPEG00000021158) #11 myf5 (ENSAPEG00000021137) ##11 lin7a (ENSAPEG00000021115) #10 ACSS3 (ENSAPEG00000021054) #9 ppfia2 (ENSAPEG00000020985) #8 ENSAPEG00000020865 foxm1 (ENSAPEG00000020793) Cichlidae ANCESTRAL SPECIES 24 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000172707.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Midas cichlid MODERN SPECIES 737 syt1a (ENSACIG00000014311) #15 cyb5r3 (ENSACIG00000014298) #16 ENSACIG00000014253 #17 ENSACIG00000014242 syt10 (ENSACIG00000014226) #18 tnnt2c (ENSACIG00000014196) #19 MTERF2 (ENSACIG00000014189) #20 cry1a (ENSACIG00000013832) #21 btbd11a (ENSACIG00000013768) #22 ENSACIG00000013750 #23 ENSACIG00000013740 igf1 (ENSACIG00000013728) #24 ENSACIG00000013710 #25 parpbp (ENSACIG00000013691) #26 nup37 (ENSACIG00000013665) #27 th2 (ENSACIG00000013549) #28 pah (ENSACIG00000013511) ##28 ascl1a (ENSACIG00000013500) #29 itfg2 (ENSACIG00000013478) #30 nrip2 (ENSACIG00000013461) #31 klhl42 (ENSACIG00000013451) #32 elapor2b (ENSACIG00000013411) #33 tspan9b (ENSACIG00000013346) #34 amdhd1 (ENSACIG00000013318) #35 Pseudocrenilabrinae ANCESTRAL SPECIES 21 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000172707.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Nile tilapia MODERN SPECIES 8 lin7a (ENSONIG00000000078) #10 myf5 (ENSONIG00000038625) ##11 myf6 (ENSONIG00000000007) #11 rps16 (ENSONIG00000000006) ##12 ENSONIG00000031149 foxm1 (ENSONIG00000000082) foxm1 (ENSONIG00000027574) ppp1r12a (ENSONIG00000000005) #13 pawr (ENSONIG00000028232) #14 syt1a (ENSONIG00000000003) #15 syt10 (ENSONIG00000000002) #18 ENSONIG00000000001 #17 tnnt2c (ENSONIG00000020696) #19 MTERF2 (ENSONIG00000020695) #20 cry1a (ENSONIG00000000075) #21 btbd11a (ENSONIG00000017796) #22 ENSONIG00000017799 igf1 (ENSONIG00000017800) #24 ENSONIG00000029183 #25 parpbp (ENSONIG00000017803) #26 ENSONIG00000042831 nup37 (ENSONIG00000041645) #27 th2 (ENSONIG00000017806) #28 pah (ENSONIG00000017811) ##28 ENSONIG00000038297 ascl1a (ENSONIG00000021219) #29 itfg2 (ENSONIG00000017820) #30 nrip2 (ENSONIG00000030365) #31 klhl42 (ENSONIG00000017822) #32 elapor2b (ENSONIG00000017824) #33 tspan9b (ENSONIG00000017829) #34 Pseudocrenilabrinae_A ANCESTRAL SPECIES 10 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000172707.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Lyretail cichlid MODERN SPECIES 291 myf5 (ENSNBRG00000010621) ##11 myf6 (ENSNBRG00000010629) #11 rps16 (ENSNBRG00000010637) #12 ENSNBRG00000010659 ppp1r12a (ENSNBRG00000010670) #13 pawr (ENSNBRG00000010725) #14 syt1a (ENSNBRG00000010739) #15 cyb5r3 (ENSNBRG00000010756) #16 ENSNBRG00000010794 #17 ENSNBRG00000010848 syt10 (ENSNBRG00000010856) #18 tnnt2c (ENSNBRG00000010879) #19 cry1a (ENSNBRG00000010898) #21 MTERF2 (ENSNBRG00000010933) #20 ENSNBRG00000010937 btbd11a (ENSNBRG00000010944) #22 ENSNBRG00000010987 ENSNBRG00000011014 igf1 (ENSNBRG00000011029) #24 ENSNBRG00000011057 #25 parpbp (ENSNBRG00000011099) #26 nup37 (ENSNBRG00000011131) #27 th2 (ENSNBRG00000011203) #28 pah (ENSNBRG00000011340) ##28 ascl1a (ENSNBRG00000011381) #29 itfg2 (ENSNBRG00000011398) #30 nrip2 (ENSNBRG00000011429) #31 klhl42 (ENSNBRG00000011450) #32 elapor2b (ENSNBRG00000011472) #33 tspan9b (ENSNBRG00000011565) #34 amdhd1 (ENSNBRG00000011657) #35 Haplochromini ANCESTRAL SPECIES 9 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Haplochromini_A ANCESTRAL SPECIES 9 ENSGT00940000166093.i ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT01100000264078.b ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Haplochromini_B ANCESTRAL SPECIES 11 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000158804.n.a ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00390000004984.b ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT01100000264078.b ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Zebra mbuna MODERN SPECIES 1099 ppfia2 (ENSMZEG00005002099) #8 ACSS3 (ENSMZEG00005002036) #9 lin7a (ENSMZEG00005002013) #10 myf5 (ENSMZEG00005002005) ##11 myf6 (ENSMZEG00005001995) #11 rps16 (ENSMZEG00005001975) #12 foxm1 (ENSMZEG00005001943) ppp1r12a (ENSMZEG00005001744) #13 pawr (ENSMZEG00005001704) #14 syt1a (ENSMZEG00005001660) #15 cyb5r3 (ENSMZEG00005001636) #16 ENSMZEG00005001628 #17 syt10 (ENSMZEG00005001603) #18 MTERF2 (ENSMZEG00005001466) #20 cry1a (ENSMZEG00005001451) #21 btbd11a (ENSMZEG00005001355) #22 ENSMZEG00005001313 igf1 (ENSMZEG00005001284) #24 pmch (ENSMZEG00005001251) parpbp (ENSMZEG00005001242) #26 nup37 (ENSMZEG00005001223) #27 th2 (ENSMZEG00005001193) #28 pah (ENSMZEG00005001158) ##28 ENSMZEG00005001144 ascl1a (ENSMZEG00005001134) #29 itfg2 (ENSMZEG00005001096) #30 nrip2 (ENSMZEG00005001086) #31 ENSMZEG00005001054 ENSMZEG00005001045 ENSMZEG00005000984 ENSMZEG00005000961 Eastern happy MODERN SPECIES 8 ppfia2 (ENSACLG00000018429) #8 ACSS3 (ENSACLG00000018059) #9 lin7a (ENSACLG00000018011) #10 myf5 (ENSACLG00000017991) ##11 myf6 (ENSACLG00000017983) #11 rps16 (ENSACLG00000017963) #12 foxm1 (ENSACLG00000017856) ppp1r12a (ENSACLG00000017614) #13 pawr (ENSACLG00000017548) #14 syt1a (ENSACLG00000017513) #15 cyb5r3 (ENSACLG00000017472) #16 ENSACLG00000017416 #17 syt10 (ENSACLG00000017353) #18 MTERF2 (ENSACLG00000017181) #20 cry1a (ENSACLG00000017110) #21 btbd11a (ENSACLG00000016936) #22 ENSACLG00000016841 igf1 (ENSACLG00000016815) #24 pmch (ENSACLG00000016802) parpbp (ENSACLG00000016788) #26 nup37 (ENSACLG00000016738) #27 th2 (ENSACLG00000016695) #28 pah (ENSACLG00000016649) ##28 ENSACLG00000016643 ascl1a (ENSACLG00000016598) #29 itfg2 (ENSACLG00000016520) #30 nrip2 (ENSACLG00000016504) #31 klhl42 (ENSACLG00000016461) #32 elapor2b (ENSACLG00000016340) #33 tspan9b (ENSACLG00000016292) #34 amdhd1 (ENSACLG00000016155) #35 P. nyererei MODERN SPECIES 487 syt10 (ENSPNYG00000022373) #18 MTERF2 (ENSPNYG00000022348) #20 cry1a (ENSPNYG00000022329) #21 btbd11a (ENSPNYG00000022244) #22 ENSPNYG00000022227 igf1 (ENSPNYG00000022201) #24 ENSPNYG00000022181 #25 parpbp (ENSPNYG00000022167) #26 nup37 (ENSPNYG00000022147) #27 th2 (ENSPNYG00000021993) #28 pah (ENSPNYG00000021907) ##28 ENSPNYG00000021899 ascl1a (ENSPNYG00000021891) #29 itfg2 (ENSPNYG00000021873) #30 nrip2 (ENSPNYG00000021862) #31 klhl42 (ENSPNYG00000021854) #32 elapor2b (ENSPNYG00000021790) #33 tspan9b (ENSPNYG00000021764) #34 amdhd1 (ENSPNYG00000021749) #35 Burton s mouthbrooder MODERN SPECIES 437 syt10 (ENSHBUG00000008857) #18 tnnt2c (ENSHBUG00000008824) #19 MTERF2 (ENSHBUG00000008815) #20 cry1a (ENSHBUG00000008802) #21 btbd11a (ENSHBUG00000008732) #22 ENSHBUG00000008652 igf1 (ENSHBUG00000008635) #24 ENSHBUG00000008609 #25 parpbp (ENSHBUG00000008599) #26 nup37 (ENSHBUG00000008577) #27 th2 (ENSHBUG00000008510) #28 pah (ENSHBUG00000008494) ##28 ascl1a (ENSHBUG00000008452) #29 itfg2 (ENSHBUG00000008439) #30 nrip2 (ENSHBUG00000008345) #31 klhl42 (ENSHBUG00000008341) #32 elapor2b (ENSHBUG00000008321) #33 tspan9b (ENSHBUG00000008253) #34 amdhd1 (ENSHBUG00000008199) #35 ENSHBUG00000008160 Atherinomorphae ANCESTRAL SPECIES 21 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Oryzias ANCESTRAL SPECIES 20 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a.d #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g.c #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Oryzias_b ANCESTRAL SPECIES 19 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a.d #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g.c #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Indian medaka MODERN SPECIES 2 ppfia2 (ENSOMEG00000004094) #8 ACSS3 (ENSOMEG00000003964) #9 lin7a (ENSOMEG00000003884) #10 myf5 (ENSOMEG00000003862) ##11 myf6 (ENSOMEG00000003855) #11 rps16 (ENSOMEG00000003840) #12 ppp1r12a (ENSOMEG00000003801) #13 pawr (ENSOMEG00000003730) #14 syt1a (ENSOMEG00000003714) #15 cyb5r3 (ENSOMEG00000003698) #16 ENSOMEG00000003669 #17 syt10 (ENSOMEG00000003610) #18 tnnt2c (ENSOMEG00000003593) #19 ENSOMEG00000003581 #20 cry1a (ENSOMEG00000003568) #21 btbd11a (ENSOMEG00000003530) #22 ENSOMEG00000003451 igf1 (ENSOMEG00000003424) #24 ENSOMEG00000003411 #25 parpbp (ENSOMEG00000003398) #26 nup37 (ENSOMEG00000003353) #27 th2 (ENSOMEG00000003320) #28 pah (ENSOMEG00000003302) ##28 ascl1a (ENSOMEG00000003274) #29 itfg2 (ENSOMEG00000003265) #30 elapor2b (ENSOMEG00000003209) #33 nrip2 (ENSOMEG00000003128) #31 klhl42 (ENSOMEG00000003121) #32 tspan9b (ENSOMEG00000003109) #34 amdhd1 (ENSOMEG00000003082) #35 snrpf (ENSOMEG00000003018) #36 Javanese ricefish MODERN SPECIES 15 ppfia2 (ENSOJAG00000023762) #8 ACSS3 (ENSOJAG00000023742) #9 lin7a (ENSOJAG00000023737) #10 myf5 (ENSOJAG00000023736) ##11 myf6 (ENSOJAG00000023735) #11 rps16 (ENSOJAG00000023733) #12 ppp1r12a (ENSOJAG00000023721) #13 pawr (ENSOJAG00000023718) #14 syt1a (ENSOJAG00000023710) #15 ENSOJAG00000023700 #17 syt10 (ENSOJAG00000023697) #18 MTERF2 (ENSOJAG00000023694) #20 cry1a (ENSOJAG00000023629) #21 ENSOJAG00000023595 ENSOJAG00000023593 btbd11a (ENSOJAG00000023574) #22 ENSOJAG00000023553 igf1 (ENSOJAG00000023545) #24 ENSOJAG00000023539 #25 parpbp (ENSOJAG00000023537) #26 nup37 (ENSOJAG00000023532) #27 th2 (ENSOJAG00000023523) #28 pah (ENSOJAG00000023397) ##28 ascl1a (ENSOJAG00000023335) #29 itfg2 (ENSOJAG00000023327) #30 nrip2 (ENSOJAG00000023325) #31 klhl42 (ENSOJAG00000023323) #32 elapor2b (ENSOJAG00000023275) #33 tspan9b (ENSOJAG00000023257) #34 amdhd1 (ENSOJAG00000023244) #35 ntn4 (ENSOJAG00000023221) #37 Oryzias_a ANCESTRAL SPECIES 15 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00390000013067.l.k.a ##12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a.d #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g.c #21 ENSGT00940000156419.b #22 ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000164757 Chinese medaka DUPLICATION Chinese medaka MODERN SPECIES 53 syt1a (ENSOSIG00000003691) #15 cyb5r3 (ENSOSIG00000003779) #16 ENSOSIG00000004396 #17 syt10 (ENSOSIG00000004402) #18 tnnt2c (ENSOSIG00000004405) #19 MTERF2 (ENSOSIG00000004407) #20 cry1a (ENSOSIG00000004452) #21 btbd11a (ENSOSIG00000006349) #22 ENSOSIG00000006712 ENSOSIG00000006713 igf1 (ENSOSIG00000006715) #24 ENSOSIG00000006717 #25 parpbp (ENSOSIG00000006718) #26 nup37 (ENSOSIG00000006723) #27 th2 (ENSOSIG00000006727) #28 pah (ENSOSIG00000007090) ##28 ascl1a (ENSOSIG00000007243) #29 itfg2 (ENSOSIG00000007245) #30 nrip2 (ENSOSIG00000007246) #31 klhl42 (ENSOSIG00000007247) #32 ENSOSIG00000007254 #33 Chinese medaka MODERN SPECIES 51 ppfia2 (ENSOSIG00000005522) #8 RPS16 (ENSOSIG00000007851) ##12 ACSS3 (ENSOSIG00000007896) #9 lin7a (ENSOSIG00000007898) #10 myf5 (ENSOSIG00000007901) ##11 myf6 (ENSOSIG00000007902) #11 ppp1r12a (ENSOSIG00000007904) #13 pawr (ENSOSIG00000007906) #14 syt1a (ENSOSIG00000007909) #15 ENSOSIG00000007911 ENSOSIG00000007916 syt10 (ENSOSIG00000007919) #18 tnnt2c (ENSOSIG00000007920) #19 MTERF2 (ENSOSIG00000007922) #20 cry1a (ENSOSIG00000007925) #21 btbd11a (ENSOSIG00000008093) #22 igf1 (ENSOSIG00000008154) #24 ENSOSIG00000008237 ENSOSIG00000008238 ENSOSIG00000008239 #25 parpbp (ENSOSIG00000008240) #26 nup37 (ENSOSIG00000008243) #27 th2 (ENSOSIG00000008247) #28 pah (ENSOSIG00000008674) ##28 ascl1a (ENSOSIG00000010250) #29 itfg2 (ENSOSIG00000010251) #30 nrip2 (ENSOSIG00000010252) #31 klhl42 (ENSOSIG00000010254) #32 ENSOSIG00000010255 #33 Japanese Medaka HdrR MODERN SPECIES 15 ppfia2 (ENSORLG00000016236) #8 ACSS3 (ENSORLG00000016249) #9 lin7a (ENSORLG00000030538) #10 myf5 (ENSORLG00000016257) ##11 myf6 (ENSORLG00000016261) #11 rps16 (ENSORLG00000016271) ##12 ppp1r12a (ENSORLG00000016314) #13 pawr (ENSORLG00000026995) #14 syt1a (ENSORLG00000016339) #15 cyb5r3 (ENSORLG00000018656) #16 ENSORLG00000016372 #17 syt10 (ENSORLG00000016381) #18 tnnt2c (ENSORLG00000016386) #19 cry1a (ENSORLG00000016410) #21 ENSORLG00000016390 #20 btbd11a (ENSORLG00000016422) #22 cox6b2 (ENSORLG00000016425) ENSORLG00000027418 igf1 (ENSORLG00000016443) #24 ENSORLG00000016450 #25 parpbp (ENSORLG00000016457) #26 nup37 (ENSORLG00000016475) #27 th2 (ENSORLG00000016488) #28 pah (ENSORLG00000016500) ##28 ascl1a (ENSORLG00000016504) #29 itfg2 (ENSORLG00000016526) #30 nrip2 (ENSORLG00000016536) #31 klhl42 (ENSORLG00000016542) #32 ENSORLG00000016575 #33 tspan9b (ENSORLG00000016594) #34 amdhd1 (ENSORLG00000016609) #35 Cyprinodontiformes ANCESTRAL SPECIES 19 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Cyprinodontoidei ANCESTRAL SPECIES 20 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000162287.B.a.c ENSGT00840000130048.b ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 NAME_4 ANCESTRAL SPECIES 16 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00940000162287.B.a.c ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 Mummichog MODERN SPECIES 2321 ENSFHEG00000003698 #18 syt10 (ENSFHEG00000003696) #18 tnnt2c (ENSFHEG00000003676) #19 ENSFHEG00000003669 #20 cry1a (ENSFHEG00000003663) #21 btbd11a (ENSFHEG00000003637) #22 ENSFHEG00000003596 ENSFHEG00000003583 ENSFHEG00000003558 igf1 (ENSFHEG00000003547) #24 ENSFHEG00000003530 #25 parpbp (ENSFHEG00000003517) #26 nup37 (ENSFHEG00000003503) #27 th2 (ENSFHEG00000003433) #28 pah (ENSFHEG00000003406) ##28 ascl1a (ENSFHEG00000003373) #29 itfg2 (ENSFHEG00000003361) #30 nrip2 (ENSFHEG00000003337) #31 klhl42 (ENSFHEG00000003330) #32 elapor2b (ENSFHEG00000000095) #33 tspan9b (ENSFHEG00000003256) #34 Sheepshead minnow MODERN SPECIES 119 ENSCVAG00000016685 ppfia2 (ENSCVAG00000016666) #8 ACSS3 (ENSCVAG00000016481) #9 lin7a (ENSCVAG00000016461) #10 myf5 (ENSCVAG00000016428) ##11 myf6 (ENSCVAG00000016409) #11 rps16 (ENSCVAG00000016397) #12 ppp1r12a (ENSCVAG00000016377) #13 pawr (ENSCVAG00000016350) #14 syt1a (ENSCVAG00000016341) #15 cyb5r3 (ENSCVAG00000016259) #16 ENSCVAG00000016230 #17 syt10 (ENSCVAG00000016202) #18 ENSCVAG00000016131 #20 cry1a (ENSCVAG00000016128) #21 btbd11a (ENSCVAG00000016113) #22 ENSCVAG00000016098 ENSCVAG00000016092 #23 igf1 (ENSCVAG00000016044) #24 ENSCVAG00000016009 #25 parpbp (ENSCVAG00000015932) #26 nup37 (ENSCVAG00000015924) #27 th2 (ENSCVAG00000015881) #28 pah (ENSCVAG00000015847) ##28 ascl1a (ENSCVAG00000015813) #29 itfg2 (ENSCVAG00000015800) #30 nrip2 (ENSCVAG00000015746) #31 klhl42 (ENSCVAG00000015737) #32 elapor2b (ENSCVAG00000015724) #33 tspan9b (ENSCVAG00000015645) #34 amdhd1 (ENSCVAG00000015623) #35 Poeciliinae ANCESTRAL SPECIES 19 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000162287.B.a.c ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 Platyfish MODERN SPECIES 8 ppfia2 (ENSXMAG00000027756) #8 ENSXMAG00000024730 ACSS3 (ENSXMAG00000017548) #9 lin7a (ENSXMAG00000026246) #10 myf5 (ENSXMAG00000017496) ##11 myf6 (ENSXMAG00000017492) #11 rps16 (ENSXMAG00000030077) #12 ppp1r12a (ENSXMAG00000017534) #13 pawr (ENSXMAG00000026362) #14 syt1a (ENSXMAG00000017468) #15 cry1a (ENSXMAG00000017466) #21 ENSXMAG00000019615 #20 syt10 (ENSXMAG00000017449) #18 ENSXMAG00000017426 #17 cyb5r3 (ENSXMAG00000017411) #16 btbd11a (ENSXMAG00000025507) #22 ENSXMAG00000024762 ENSXMAG00000026515 #23 igf1 (ENSXMAG00000028624) #24 ENSXMAG00000017362 #25 parpbp (ENSXMAG00000017346) #26 nup37 (ENSXMAG00000017326) #27 th2 (ENSXMAG00000017293) #28 pah (ENSXMAG00000017271) ##28 ascl1a (ENSXMAG00000019614) #29 itfg2 (ENSXMAG00000017228) #30 nrip2 (ENSXMAG00000025434) #31 klhl42 (ENSXMAG00000003606) #32 elapor2b (ENSXMAG00000003572) #33 tspan9b (ENSXMAG00000026102) #34 amdhd1 (ENSXMAG00000015455) #35 Poecilia ANCESTRAL SPECIES 29 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000162287.B.a.c ENSGT00840000130048.b ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 Guppy MODERN SPECIES 454 trmu (ENSPREG00000007980) ENSPREG00000007960 tprkb (ENSPREG00000007951) alg10 (ENSPREG00000007949) ENSPREG00000007942 ENSPREG00000007933 CPNE8 (ENSPREG00000007888) ENSPREG00000007642 ABCD2 (ENSPREG00000007569) ENSPREG00000007544 SLC2A13 (ENSPREG00000007504) ENSPREG00000007468 slco1d1 (ENSPREG00000007441) slco1d1 (ENSPREG00000007258) ENSPREG00000007220 btbd11a (ENSPREG00000007168) #22 ENSPREG00000007146 ENSPREG00000007135 igf1 (ENSPREG00000007109) #24 ENSPREG00000007091 #25 parpbp (ENSPREG00000007077) #26 nup37 (ENSPREG00000007053) #27 th2 (ENSPREG00000007023) #28 pah (ENSPREG00000006984) ##28 ascl1a (ENSPREG00000006969) #29 itfg2 (ENSPREG00000006906) #30 nrip2 (ENSPREG00000006888) #31 klhl42 (ENSPREG00000006874) #32 ENSPREG00000006838 #33 gnsa (ENSPREG00000006816) dennd6b (ENSPREG00000006776) NAME_6 ANCESTRAL SPECIES 55 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT01100000263533.b.b.a.a.a.b.a #23 ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Sailfin molly MODERN SPECIES 1204 btbd11a (ENSPLAG00000022149) #22 ENSPLAG00000000470 #23 ENSPLAG00000022076 #23 igf1 (ENSPLAG00000022067) #24 ENSPLAG00000022039 #25 parpbp (ENSPLAG00000022021) #26 nup37 (ENSPLAG00000022012) #27 th2 (ENSPLAG00000021955) #28 pah (ENSPLAG00000021918) ##28 Amazon molly MODERN SPECIES 320 ppfia2 (ENSPFOG00000017112) #8 ACSS3 (ENSPFOG00000017417) #9 lin7a (ENSPFOG00000017480) #10 myf5 (ENSPFOG00000017488) ##11 myf6 (ENSPFOG00000017498) #11 rps16 (ENSPFOG00000017508) #12 ppp1r12a (ENSPFOG00000017528) #13 pawr (ENSPFOG00000017689) #14 syt1a (ENSPFOG00000017713) #15 cyb5r3 (ENSPFOG00000017742) #16 ENSPFOG00000017778 #17 syt10 (ENSPFOG00000017820) #18 tnnt2c (ENSPFOG00000020848) #19 cry1a (ENSPFOG00000017846) #21 ENSPFOG00000017877 #20 btbd11a (ENSPFOG00000017882) #22 ENSPFOG00000017913 #23 igf1 (ENSPFOG00000017930) #24 ENSPFOG00000017948 #25 parpbp (ENSPFOG00000017952) #26 nup37 (ENSPFOG00000017980) #27 th2 (ENSPFOG00000018017) #28 pah (ENSPFOG00000018041) ##28 ascl1a (ENSPFOG00000018073) #29 itfg2 (ENSPFOG00000018076) #30 nrip2 (ENSPFOG00000024434) #31 ENSPFOG00000023570 klhl42 (ENSPFOG00000018095) #32 elapor2b (ENSPFOG00000018104) #33 Aplocheiloidei ANCESTRAL SPECIES 14 ENSGT00940000166093 ENSGT01050000244900.a.a.a.a.b.bb #8 ENSGT00940000157479 #9 ENSGT00940000153222.a.a #10 ENSGT00950000182959.a.a ##11 ENSGT00950000182959.a.b.b.a #11 ENSGT00390000013067.l.l #12 ENSGT00940000156120.a #13 ENSGT00390000000406 #14 ENSGT00940000155394.i.a #15 ENSGT00940000153962.b #16 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000158899 #18 ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT01030000234576.D.a.a.b.a.a.a.a.a.b.a.a ENSGT00940000159081 #24 ENSGT00940000168896 #25 ENSGT00390000006088 #26 ENSGT00390000010777 #27 ENSGT00950000182885.C.b #28 ENSGT00950000182885.B ##28 ENSGT00940000166611 #29 ENSGT00390000005378 #30 ENSGT00950000182999.b.a.a #31 ENSGT00940000160124 #32 ENSGT00940000154983.c.b #33 ENSGT00940000158225.i.a #34 ENSGT00390000008645 #35 ENSGT00940000154818 #36 Turquoise killifish MODERN SPECIES 1610 myf6 (ENSNFUG00015018050) #11 ENSNFUG00015018056 ENSNFUG00015018060 RPS16 (ENSNFUG00015018063) #12 ENSNFUG00015018069 ppp1r12a (ENSNFUG00015018078) #13 PAWR (ENSNFUG00015018098) #14 ENSNFUG00015018105 SYT1A (ENSNFUG00015018114) #15 CYB5R3 (ENSNFUG00015018146) #16 ENSNFUG00015018708 #17 ENSNFUG00015018727 SYT10 (ENSNFUG00015018728) #18 tnnt2c (ENSNFUG00015018733) #19 cry1a (ENSNFUG00015018834) #21 btbd11a (ENSNFUG00015022372) #22 ENSNFUG00015022646 IGF1 (ENSNFUG00015022671) #24 ENSNFUG00015022756 #25 PARPBP (ENSNFUG00015022762) #26 nup37 (ENSNFUG00015022768) #27 th2 (ENSNFUG00015022835) #28 pah (ENSNFUG00015023683) ##28 ASCL1A (ENSNFUG00015023739) #29 CR847950.4 (ENSNFUG00015023740) itfg2 (ENSNFUG00015023745) #30 ENSNFUG00015023748 TRHDE (ENSNFUG00015023753) ENSNFUG00015023818 CPM (ENSNFUG00015023821) dclre1c (ENSNFUG00015023833) Mangrove rivulus MODERN SPECIES 19 ppfia2 (ENSKMAG00000011901) #8 ACSS3 (ENSKMAG00000012129) #9 lin7a (ENSKMAG00000012178) #10 myf5 (ENSKMAG00000012199) ##11 myf6 (ENSKMAG00000012210) #11 rps16 (ENSKMAG00000012230) #12 ppp1r12a (ENSKMAG00000012279) #13 pawr (ENSKMAG00000012360) #14 ENSKMAG00000012380 syt1a (ENSKMAG00000012419) #15 cyb5r3 (ENSKMAG00000012463) #16 ENSKMAG00000012499 #17 syt10 (ENSKMAG00000012546) #18 tnnt2c (ENSKMAG00000012574) #19 cry1a (ENSKMAG00000012604) #21 btbd11a (ENSKMAG00000012822) #22 ENSKMAG00000012909 ENSKMAG00000012934 igf1 (ENSKMAG00000012960) #24 ENSKMAG00000012992 #25 parpbp (ENSKMAG00000013026) #26 nup37 (ENSKMAG00000013089) #27 th2 (ENSKMAG00000013134) #28 pah (ENSKMAG00000013176) ##28 ascl1a (ENSKMAG00000013228) #29 itfg2 (ENSKMAG00000013255) #30 nrip2 (ENSKMAG00000013305) #31 klhl42 (ENSKMAG00000013321) #32 ENSKMAG00000013331 elapor2b (ENSKMAG00000013371) #33 tspan9b (ENSKMAG00000013466) #34 Tiger tail seahorse MODERN SPECIES 433 rps16 (ENSHCOG00000017762) #12 myf6 (ENSHCOG00000017768) #11 myf5 (ENSHCOG00000017783) ##11 lin7a (ENSHCOG00000017797) #10 ACSS3 (ENSHCOG00000017835) #9 ppfia2 (ENSHCOG00000017898) #8 ENSHCOG00000017941 foxm1 (ENSHCOG00000017947) ENSHCOG00000017961 TULP3 (ENSHCOG00000017974) ENSHCOG00000017982 ENSHCOG00000018040 #17 syt10 (ENSHCOG00000018057) #18 tnnt2c (ENSHCOG00000018063) #19 cry1a (ENSHCOG00000018111) #21 btbd11a (ENSHCOG00000018163) #22 ENSHCOG00000018199 #23 igf1 (ENSHCOG00000018270) #24 parpbp (ENSHCOG00000018307) #26 nup37 (ENSHCOG00000018356) #27 th2 (ENSHCOG00000018465) #28 pah (ENSHCOG00000018488) ##28 ascl1a (ENSHCOG00000018503) #29 ENSHCOG00000018511 itfg2 (ENSHCOG00000018527) #30 ENSHCOG00000018560 elapor2b (ENSHCOG00000018591) #33 tspan9b (ENSHCOG00000018619) #34 amdhd1 (ENSHCOG00000018637) #35 ENSHCOG00000018663 #36 ntn4 (ENSHCOG00000018712) #37 Pinecone sodierfish MODERN SPECIES 15 lin7a (ENSMMDG00005020771) #10 myf5 (ENSMMDG00005020770) ##11 myf6 (ENSMMDG00005020767) #11 ENSMMDG00005020765 rps16 (ENSMMDG00005020764) #12 ppp1r12a (ENSMMDG00005020751) #13 pawr (ENSMMDG00005020744) #14 syt1a (ENSMMDG00005020740) #15 cyb5r3 (ENSMMDG00005020515) #16 ENSMMDG00005020134 #17 ENSMMDG00005020084 #18 syt10 (ENSMMDG00005020079) #18 tnnt2c (ENSMMDG00005020074) #19 MTERF2 (ENSMMDG00005020073) #20 cry1a (ENSMMDG00005018951) #21 btbd11a (ENSMMDG00005018917) #22 ENSMMDG00005018912 igf1 (ENSMMDG00005018826) #24 ENSMMDG00005018820 #25 parpbp (ENSMMDG00005018818) #26 nup37 (ENSMMDG00005018813) #27 th2 (ENSMMDG00005018778) #28 pah (ENSMMDG00005018768) ##28 ascl1a (ENSMMDG00005018763) #29 itfg2 (ENSMMDG00005018758) #30 nrip2 (ENSMMDG00005018750) #31 klhl42 (ENSMMDG00005018749) #32 elapor2b (ENSMMDG00005018739) #33 tspan9b (ENSMMDG00005018735) #34 amdhd1 (ENSMMDG00005018734) #35 snrpf (ENSMMDG00005018733) #36 Cod MODERN SPECIES 17 ENSGMOG00000026861 ENSGMOG00000022997 ENSGMOG00000034711 ENSGMOG00000031826 ENSGMOG00000030892 ENSGMOG00000032127 ENSGMOG00000029906 ENSGMOG00000035632 ENSGMOG00000014279 ENSGMOG00000028775 ENSGMOG00000034372 ENSGMOG00000010347 #17 ENSGMOG00000003257 #18 tnnt2c (ENSGMOG00000001076) #19 ENSGMOG00000001088 #21 btbd11a (ENSGMOG00000001108) #22 ENSGMOG00000001151 IGF1 (ENSGMOG00000030090) #24 parpbp (ENSGMOG00000001191) #26 nup37 (ENSGMOG00000001219) #27 th2 (ENSGMOG00000001233) #28 pah (ENSGMOG00000001263) ##28 amdhd1 (ENSGMOG00000007738) #35 ENSGMOG00000007741 #36 ntn4 (ENSGMOG00000009327) #37 sco2 (ENSGMOG00000003285) ncaph2 (ENSGMOG00000003228) socs2 (ENSGMOG00000025287) cradd (ENSGMOG00000010443) ENSGMOG00000006093 ENSGMOG00000006062 Protacanthopterygii ANCESTRAL SPECIES ENSGT00940000156419.b #22 Salmoninae ANCESTRAL SPECIES 1308 ENSGT00940000156419.b #22 ENSGT00390000006791.k ENSGT00940000159852.a.c Salmoninae_a ANCESTRAL SPECIES 20 ENSGT00390000010968.b.d ENSGT00940000156976.fb.l ENSGT00940000159840.g.a ENSGT00940000160682.b.c.b.a.b ENSGT00940000160682.b.c.b.a.a.a ENSGT00940000157236.i.c ENSGT00940000161365.g ENSGT00950000183090.B.f ENSGT00940000160071.g ENSGT00940000153394.c.b.b.c.a.a.b ENSGT00940000154932.A.u ENSGT00940000157170.i ENSGT00940000155961.k.a ENSGT00940000165144.a.a ENSGT00940000159852.a.c ENSGT00940000156419.b #22 ENSGT00950000182835.c.c.g.a ENSGT00390000001376.dc ENSGT00390000008294.q.b ENSGT01030000234532.B.e.a.a.a.b.c ENSGT00390000007332.e ENSGT00940000157294.d ENSGT00390000014903.u ENSGT01030000234620.a.b.b.a.k ENSGT00390000009379.c ENSGT00940000160539.j.a ENSGT00390000017284.a.b.c.c ENSGT00960000187089 ENSGT00390000007726.b ENSGT00940000159026.j ENSGT00510000050937.e.a Oncorhynchus ANCESTRAL SPECIES 9 ENSGT00940000156976.fb.l ENSGT00940000159840.g.a ENSGT00940000160682.b.c.b.a.b ENSGT00940000157236.i.c ENSGT00940000161365.g ENSGT00950000183090.B.f ENSGT00940000160071.g ENSGT00940000153394.c.b.b.c.a.a.b ENSGT00940000154932.A.u ENSGT00940000157170.i ENSGT00940000155961.k.a ENSGT00940000165144.a.a ENSGT00940000158861.B.c ENSGT00390000010377.j ENSGT00940000159852.a.c ENSGT00940000156419.b #22 ENSGT00950000182835.c.c.g.a ENSGT00390000001376.dc ENSGT00390000008294.q.b ENSGT00390000008294.q.a.a ENSGT01030000234532.B.e.a.a.a.b.c ENSGT00390000007332.e ENSGT00940000157294.d ENSGT00390000014903.u ENSGT01030000234620.a.b.b.a.k ENSGT00390000009379.c ENSGT00940000160539.j.a ENSGT00390000017284.a.b.c.c ENSGT00940000154427.B ENSGT00390000007726.b ENSGT00940000159026.j Rainbow trout MODERN SPECIES 13 tafa5a (ENSOMYG00000055476) ENSOMYG00000028322 zbed4 (ENSOMYG00000028330) alg12 (ENSOMYG00000028338) creld2 (ENSOMYG00000028372) ENSOMYG00000028423 ENSOMYG00000028439 ENSOMYG00000028466 ENSOMYG00000029195 ENSOMYG00000030350 ENSOMYG00000030387 ENSOMYG00000059836 ENSOMYG00000030439 ENSOMYG00000025671 ENSOMYG00000030474 ENSOMYG00000030809 #22 ENSOMYG00000063634 ENSOMYG00000036828 sh2d1ab (ENSOMYG00000037132) ENSOMYG00000053137 ENSOMYG00000037165 ENSOMYG00000068606 ENSOMYG00000060335 ENSOMYG00000048402 ENSOMYG00000037200 ENSOMYG00000037219 ENSOMYG00000037248 ENSOMYG00000037318 ENSOMYG00000070158 ENSOMYG00000037345 ENSOMYG00000061183 Oncorhynchus_a ANCESTRAL SPECIES 16 ENSGT00390000010968.b.d ENSGT00940000156976.fb.l ENSGT00940000159840.g.a ENSGT00940000160682.b.c.b.a.b.a ENSGT00940000157236.i.c ENSGT00940000161365.g ENSGT00950000183090.B.f ENSGT00940000160071.g ENSGT00940000153394.c.b.b.c.a.a.b ENSGT00940000154932.A.u ENSGT00940000157170.i ENSGT00940000165144.a.a ENSGT00940000158861.B.c ENSGT00390000010377.j ENSGT00940000159852.a.c ENSGT00940000156419.b #22 ENSGT00950000182835.c.c.g.a ENSGT00390000001376.dc ENSGT00390000008294.q.b ENSGT00390000008294.q.a.a ENSGT01030000234532.B.e.a.a.a.b.c ENSGT00390000007332.e ENSGT00940000157294.d ENSGT00390000014903.u ENSGT01030000234620.a.b.b.a.k ENSGT00390000009379.c ENSGT00940000160539.j.a ENSGT00390000017284.a.b.c.c ENSGT00940000154427.B ENSGT00390000007726.b ENSGT00940000159026.j Coho salmon MODERN SPECIES 29 tafa5a (ENSOKIG00005031692) ENSOKIG00005031714 zbed4 (ENSOKIG00005031736) alg12 (ENSOKIG00005031746) creld2 (ENSOKIG00005031782) ENSOKIG00005031926 PIM3 (ENSOKIG00005031937) ENSOKIG00005031979 ENSOKIG00005031999 KDM5A (ENSOKIG00005032479) ENSOKIG00005042701 ENSOKIG00005042731 ENSOKIG00005042751 ENSOKIG00005042827 CDKN1B (ENSOKIG00005042946) ABTB3 (ENSOKIG00005043009) #22 ENSOKIG00005043302 SH2D1A (ENSOKIG00005043579) ostc (ENSOKIG00005043675) RPL34 (ENSOKIG00005043694) ENSOKIG00005043707 ENSOKIG00005043718 SEPSECS (ENSOKIG00005043754) lgi2a (ENSOKIG00005043836) NAA40 (ENSOKIG00005043856) PPP2R5B (ENSOKIG00005043949) gpha2 (ENSOKIG00005044524) plcb3 (ENSOKIG00005044608) ENSOKIG00005045298 PAIP2B (ENSOKIG00005045304) ENSOKIG00005045307 Chinook salmon MODERN SPECIES 6 rab3db (ENSOTSG00005011922) epor (ENSOTSG00005011923) ENSOTSG00005011925 ZNF653 (ENSOTSG00005011927) tspan35 (ENSOTSG00005011930) zgc:158403 (ENSOTSG00005001819) ENSOTSG00005001904 ENSOTSG00005001910 USP15 (ENSOTSG00005001921) KDM5A (ENSOTSG00005002261) ENSOTSG00005005949 ENSOTSG00005005951 ENSOTSG00005005952 ENSOTSG00005005953 cdkn1ba (ENSOTSG00005005954) btbd11a (ENSOTSG00005005957) #22 ENSOTSG00005006274 cwc27 (ENSOTSG00005006280) ENSOTSG00005006645 ENSOTSG00005006646 trim23 (ENSOTSG00005006648) lhx5 (ENSOTSG00005006908) ENSOTSG00005006910 GCNT4 (ENSOTSG00005006913) FER (ENSOTSG00005006927) pja2 (ENSOTSG00005007487) man2a1 (ENSOTSG00005007497) ENSOTSG00005008137 slc25a46 (ENSOTSG00005008139) wdr36 (ENSOTSG00005008143) camk4 (ENSOTSG00005008467) Salmo ANCESTRAL SPECIES 25 ENSGT00940000159839.d.a.a.b ENSGT00390000010968.b.d ENSGT00940000156976.fb.l ENSGT00940000159840.g.a ENSGT00940000160682.b.c.b.a.a.a ENSGT00940000157236.i.c ENSGT00940000161365.g ENSGT00950000183090.B.f ENSGT00940000160071.g ENSGT00940000153394.c.b.b.c.a.a.b ENSGT00940000154932.A.u ENSGT00940000157170.i ENSGT00940000155961.k.a ENSGT00940000165144.a.a ENSGT00940000159852.a.c ENSGT00940000156419.b #22 ENSGT00950000182835.c.c.g.a ENSGT00390000001376.dc ENSGT00390000008294.q.b ENSGT01030000234532.B.e.a.a.a.b.c ENSGT00390000007332.e ENSGT00940000157294.d ENSGT00390000014903.u ENSGT01030000234620.a.b.b.a.k ENSGT00390000009379.c ENSGT00940000160539.j.a ENSGT00960000187089 ENSGT00390000007726.b ENSGT00940000159026.j ENSGT00510000050937.e.a ENSGT00940000159479.q.a Atlantic salmon MODERN SPECIES 26 ENSSSAG00000054897 ppp2r5b (ENSSSAG00000054143) ENSSSAG00000109181 ENSSSAG00000113737 ENSSSAG00000098231 ENSSSAG00000067626 ENSSSAG00000067718 ENSSSAG00000067727 U527 (ENSSSAG00000083279) ENSSSAG00000112374 ENSSSAG00000110879 ENSSSAG00000041618 ENSSSAG00000110408 sh2d1ab (ENSSSAG00000002266) ENSSSAG00000002466 ENSSSAG00000003486 #22 ENSSSAG00000097083 ENSSSAG00000004769 ENSSSAG00000004116 ENSSSAG00000040079 ENSSSAG00000004943 ENSSSAG00000092323 ENSSSAG00000093076 creld2 (ENSSSAG00000005064) alg12 (ENSSSAG00000005116) zbed4 (ENSSSAG00000005143) ENSSSAG00000115239 tafa5a (ENSSSAG00000088442) ENSSSAG00000090530 tbc1d22a (ENSSSAG00000005337) GRAMD4 (ENSSSAG00000007506) River trout MODERN SPECIES 38 tbc1d22a (ENSSTUG00000044049) tafa5a (ENSSTUG00000044004) ENSSTUG00000043984 alg12 (ENSSTUG00000043941) creld2 (ENSSTUG00000043893) PIM3 (ENSSTUG00000043883) ENSSTUG00000043873 USP15 (ENSSTUG00000042570) KDM5A (ENSSTUG00000041346) ENSSTUG00000041196 ENSSTUG00000041126 ENSSTUG00000041066 cdkn1ba (ENSSTUG00000041037) ENSSTUG00000041034 ENSSTUG00000041028 btbd11a (ENSSTUG00000040189) #22 ENSSTUG00000037589 SH2D1A (ENSSTUG00000037504) ostc (ENSSTUG00000037468) rpl34 (ENSSTUG00000037433) ENSSTUG00000037353 ENSSTUG00000037339 sepsecs (ENSSTUG00000037305) lgi2a (ENSSTUG00000037292) NAA40 (ENSSTUG00000037251) PPP2R5B (ENSSTUG00000036386) gpha2 (ENSSTUG00000036344) plcb3 (ENSSTUG00000035609) ENSSTUG00000035557 PAIP2B (ENSSTUG00000035540) ENSSTUG00000035513 Huchen MODERN SPECIES 1058 btbd11a (ENSHHUG00000050509) #22 shisal1a (ENSHHUG00000050503) cdkn1ba (ENSHHUG00000050501) cdpf1 (ENSHHUG00000050498) ENSHHUG00000050495 Northern pike MODERN SPECIES 22 mcm10 (ENSELUG00000006765) ENSELUG00000026506 ucmaa (ENSELUG00000006785) phyh (ENSELUG00000001133) cdk17 (ENSELUG00000006881) ELK3 (ENSELUG00000006922) hcfc2 (ENSELUG00000006965) ENSELUG00000006997 ENSELUG00000007354 ENSELUG00000025445 cradd (ENSELUG00000007467) socs2 (ENSELUG00000030544) ncaph2 (ENSELUG00000001341) sco2 (ENSELUG00000007587) ENSELUG00000007613 btbd11a (ENSELUG00000001508) #22 shisal1a (ENSELUG00000007707) ENSELUG00000001134 ENSELUG00000025751 ENSELUG00000026492 cdpf1 (ENSELUG00000030088) cdkn1ba (ENSELUG00000007811) pparaa (ENSELUG00000007870) ENSELUG00000007904 atxn10 (ENSELUG00000007937) ENSELUG00000008077 ENSELUG00000008160 ENSELUG00000008278 KDM5A (ENSELUG00000008408) SLC6A13 (ENSELUG00000008490) USP15 (ENSELUG00000008657) Otomorpha ANCESTRAL SPECIES 486 ENSGT00940000158899 #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 Clupeiformes ANCESTRAL SPECIES 211 ENSGT00950000182839.B.a.a.k ENSGT00940000155210.a.b ENSGT00540000070023.c.b ENSGT00940000165713 ENSGT00940000167467 ENSGT00390000017324 ENSGT00940000158969 ENSGT00390000002793 ENSGT00940000158899 #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00940000154709.a.a #19 ENSGT00530000063817.b.b #20 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 Atlantic herring MODERN SPECIES 7 ENSCHAG00000001748 arfgap3 (ENSCHAG00000001497) pacsin2 (ENSCHAG00000000898) ttll1 (ENSCHAG00000021160) ENSCHAG00000021158 mcat (ENSCHAG00000021150) ENSCHAG00000021147 ENSCHAG00000021139 ENSCHAG00000021131 slc26a4 (ENSCHAG00000020573) slc26a3.1 (ENSCHAG00000019565) si:dkey-222f8.3 (ENSCHAG00000019390) tnnt2c (ENSCHAG00000019347) #19 ENSCHAG00000019339 #20 cry1a (ENSCHAG00000019111) #21 btbd11a (ENSCHAG00000018552) #22 ENSCHAG00000018506 ENSCHAG00000018478 ENSCHAG00000018460 rpap3 (ENSCHAG00000018420) ENSCHAG00000018393 ENSCHAG00000018365 ENSCHAG00000018343 ENSCHAG00000018339 ENSCHAG00000018277 pwp2h (ENSCHAG00000018030) ENSCHAG00000018002 ENSCHAG00000017986 RAB9A (ENSCHAG00000017977) gpm6ba (ENSCHAG00000017841) gemin8 (ENSCHAG00000017828) Denticle herring MODERN SPECIES 6 ENSDCDG00000026655 PDE3A (ENSDCDG00000026646) slco1c1 (ENSDCDG00000026401) bcap29 (ENSDCDG00000026394) dus4l (ENSDCDG00000026392) gpr22a (ENSDCDG00000026390) COG5 (ENSDCDG00000026302) ANO6 (ENSDCDG00000026083) ints13 (ENSDCDG00000025410) syt10 (ENSDCDG00000025399) #18 ENSDCDG00000024927 #17 cyb5r3 (ENSDCDG00000024886) #16 si:dkey-222f8.3 (ENSDCDG00000024882) tnnt2c (ENSDCDG00000024879) #19 cry1a (ENSDCDG00000023919) #21 btbd11a (ENSDCDG00000022910) #22 ENSDCDG00000022903 PRKCE (ENSDCDG00000022722) six2b (ENSDCDG00000022710) ENSDCDG00000022707 ppm1bb (ENSDCDG00000022702) glud1b (ENSDCDG00000022676) SNCG (ENSDCDG00000022668) BMPR1A (ENSDCDG00000021374) ldb3b (ENSDCDG00000021348) OPN4 (ENSDCDG00000021327) CCR8 (ENSDCDG00000021316) socs5a (ENSDCDG00000021257) gch2 (ENSDCDG00000021253) cript (ENSDCDG00000021252) pigf (ENSDCDG00000021250) Otophysi ANCESTRAL SPECIES 269 ENSGT00940000153969.a ENSGT00620000087961.a.b.a.b.a ENSGT00940000167336 ENSGT00940000161249 ENSGT00940000155867.a.b.e ENSGT00440000033504.B.b ENSGT00390000006546 ENSGT00530000063745.b ENSGT00940000158899 #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 Characiphysae ANCESTRAL SPECIES 15 ENSGT00940000161249 ENSGT00940000155867.a.b.e ENSGT00440000033504.B.b ENSGT00390000006546 ENSGT00530000063745.b ENSGT00940000156144.a.b ENSGT00940000163299.B.b.b.j ENSGT00940000157963 ENSGT00940000158899 #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT00940000156154 ENSGT00390000011401 ENSGT00390000015299.a.b.b.a.f ENSGT00390000000068.a.a ENSGT00940000162201.o.d ENSGT00950000183077.a.a ENSGT00940000154822.a ENSGT00940000159018.c ENSGT00940000161146 ENSGT00440000033863 ENSGT00940000153908.a ENSGT00390000011980.a.i.b ENSGT00390000011980.a.i.a ENSGT00390000007878 ENSGT00390000006913 Channel catfish MODERN SPECIES 10 mettl25 (ENSIPUG00000017885) tmtc2 (ENSIPUG00000017846) ENSIPUG00000017834 ENSIPUG00000017809 syt10 (ENSIPUG00000017790) #18 spag6 (ENSIPUG00000017752) ENSIPUG00000017740 ENSIPUG00000017728 ENSIPUG00000017723 ENSIPUG00000017624 #17 Cyb5r3 (ENSIPUG00000017567) #16 si:dkey-222f8.3 (ENSIPUG00000017464) si:dkey-222f8.3 (ENSIPUG00000017413) tnnt2c (ENSIPUG00000017363) #19 cry1a (ENSIPUG00000017249) #21 btbd11a (ENSIPUG00000017196) #22 braf (ENSIPUG00000017122) Mrps33 (ENSIPUG00000017102) tmem178b (ENSIPUG00000017092) cnot4b (ENSIPUG00000016994) ENSIPUG00000016980 mkrn1 (ENSIPUG00000016956) cecr6 (ENSIPUG00000016945) Il17ra (ENSIPUG00000016862) rergl (ENSIPUG00000016826) arhgef39 (ENSIPUG00000016797) lmo3 (ENSIPUG00000016756) mgst1 (ENSIPUG00000016739) dera (ENSIPUG00000016710) helb (ENSIPUG00000016651) irak3 (ENSIPUG00000016634) Characiphysae_b ANCESTRAL SPECIES 102 ENSGT00940000158899 #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT00390000008061.j.a ENSGT00940000156154 ENSGT00390000011401 ENSGT00390000015299.a.b.b.a.f ENSGT00390000000068.a.a ENSGT00940000162201.o.d ENSGT00950000183077.a.a ENSGT00940000154822.a ENSGT00940000159018.c ENSGT00940000161146 ENSGT00440000033863 ENSGT00940000153908.a ENSGT00390000011980.a.i.b ENSGT00390000011980.a.i.a ENSGT00390000007878 Characoidei ANCESTRAL SPECIES 96 ENSGT00940000158899 #18 ENSGT01050000244951.a.b.a.b.b #17 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c.e ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000165530.a.b ENSGT00940000156419.b #22 ENSGT00390000008061.j.a ENSGT00940000156154 ENSGT00390000011401 ENSGT00390000015299.a.b.b.a.f ENSGT00390000000068.a.a ENSGT00940000162201.o.d ENSGT00950000183077.a.a ENSGT00940000154822.a ENSGT00940000159018.c ENSGT00940000161146 ENSGT00440000033863 ENSGT00940000153908.a ENSGT00390000011980.a.i.b ENSGT00390000011980.a.i.a ENSGT00390000007878 Red-bellied piranha MODERN SPECIES 41 ENSPNAG00000008459 ENSPNAG00000005178 syt10 (ENSPNAG00000001045) #18 ENSPNAG00000008523 #17 cyb5r3 (ENSPNAG00000008543) #16 si:dkey-222f8.3 (ENSPNAG00000008556) tnnt2c (ENSPNAG00000001084) #19 cry1a (ENSPNAG00000006718) #21 btbd11a (ENSPNAG00000001119) #22 braf (ENSPNAG00000008630) mrps33 (ENSPNAG00000008638) tmem178bb (ENSPNAG00000001136) cnot4b (ENSPNAG00000008679) ENSPNAG00000008695 mkrn1 (ENSPNAG00000008708) TMEM121B (ENSPNAG00000008710) ENSPNAG00000001170 rergla (ENSPNAG00000008726) arhgef39 (ENSPNAG00000001177) ENSPNAG00000008739 lmo3 (ENSPNAG00000001182) mgst1.1 (ENSPNAG00000008768) mgst1.2 (ENSPNAG00000008774) dera (ENSPNAG00000008778) Mexicana tetra MODERN SPECIES 22 ENSAMXG00000040305 ENSAMXG00000000922 ENSAMXG00000036009 ENSAMXG00000000926 ENSAMXG00000031709 ENSAMXG00000029987 syt10 (ENSAMXG00000000324) #18 ENSAMXG00000005360 #17 cyb5r3 (ENSAMXG00000037793) #16 si:dkey-222f8.3 (ENSAMXG00000005380) tnnt2c (ENSAMXG00000025742) #19 ENSAMXG00000031949 ENSAMXG00000043474 cry1a (ENSAMXG00000005406) #21 ENSAMXG00000005431 btbd11a (ENSAMXG00000043749) #22 ENSAMXG00000024989 braf (ENSAMXG00000011513) mrps33 (ENSAMXG00000043198) TMEM178B (ENSAMXG00000043186) Electric eel MODERN SPECIES 58 ENSEEEG00000017284 syt10 (ENSEEEG00000017286) #18 ENSEEEG00000017287 #18 ENSEEEG00000017290 #17 cyb5r3 (ENSEEEG00000017318) #16 si:dkey-222f8.3 (ENSEEEG00000017362) tnnt2c (ENSEEEG00000017363) #19 cry1a (ENSEEEG00000017367) #21 btbd11a (ENSEEEG00000017533) #22 ENSEEEG00000017536 braf (ENSEEEG00000017556) mrps33 (ENSEEEG00000017738) tmem178bb (ENSEEEG00000017739) cnot4b (ENSEEEG00000017741) ENSEEEG00000017754 mkrn1 (ENSEEEG00000017755) TMEM121B (ENSEEEG00000017757) ENSEEEG00000017762 rergla (ENSEEEG00000017769) arhgef39 (ENSEEEG00000017773) lmo3 (ENSEEEG00000017775) ENSEEEG00000017778 mgst1.2 (ENSEEEG00000017786) dera (ENSEEEG00000017787) Cyprinoidei ANCESTRAL SPECIES 28 ENSGT00390000011980.a.i.b ENSGT00940000153908.a ENSGT00440000033863 ENSGT00940000161146 ENSGT00940000165644.f ENSGT00940000154822.a ENSGT00950000183077.a.a ENSGT00940000162201.o.d ENSGT00390000000068.a.a ENSGT00390000015299.a.b.b.a.f ENSGT00390000011401 ENSGT00940000156154 ENSGT00530000063825.A.c.e ENSGT00940000154709.a.a #19 ENSGT00940000155455.g #21 ENSGT00940000156419.b #22 ENSGT00730000111314 ENSGT00390000001702 ENSGT00940000155849.h ENSGT00940000160326.c.a ENSGT00940000160326.c.b ENSGT00950000182994.B.a.b ENSGT00940000153969.a ENSGT00620000087961.a.b.a.b.a ENSGT00940000167336 ENSGT00940000161249 ENSGT00940000155867.a.b.e ENSGT00940000164603 ENSGT00390000006546 ENSGT00530000063745.b ENSGT00940000163299.B.a.a Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 2 ENSGT00390000011980.a.i.b ENSGT00940000153908.a.g ENSGT00440000033863.a ENSGT00940000161146.a ENSGT00940000165644.f.b ENSGT00940000154822.a.b ENSGT00950000183077.a.a.c ENSGT00940000162201.o.d ENSGT00390000000068.a.a.a ENSGT00390000015299.a.b.b.a.f.a ENSGT00390000011401.ub ENSGT00940000156154.i ENSGT00530000063825.A.c.e.f ENSGT00940000154709.a.a.h #19 ENSGT00940000155455.g.a #21 ENSGT00940000156419.b.a #22 ENSGT00940000153962.b.l.b #16 ENSGT00730000111314 ENSGT00390000001702.m.a ENSGT00940000155849.h.e ENSGT00940000160326.c.a ENSGT00950000182994.B.a.b.ib ENSGT00940000153969.a.d ENSGT00620000087961.a.b.a.b.a.b ENSGT00940000167336.g ENSGT00940000161249.g ENSGT00940000155867.a.b.e.a ENSGT00440000033504.B.b ENSGT00940000163299.B.a.b.d.b.a.b.b.a.b.b ENSGT00940000158899.e #18 ENSGT01050000244951.a.b.a.b.b.b #17 Cyprininae_a ANCESTRAL SPECIES 354 ENSGT00390000011980.a.i.b.a ENSGT00940000153908.a.g ENSGT00440000033863.a ENSGT00940000161146.a ENSGT00940000165644.f.b ENSGT00940000154822.a.b ENSGT00950000183077.a.a.c ENSGT00940000162201.o.d.b ENSGT00390000000068.a.a.a ENSGT00390000015299.a.b.b.a.f.a ENSGT00390000011401.ub ENSGT00940000156154.i ENSGT00530000063825.A.c.e.f ENSGT00940000154709.a.a.h #19 ENSGT00940000155455.g.a #21 ENSGT00940000156419.b.a #22 ENSGT00940000153962.b.l.b #16 ENSGT00730000111314 ENSGT00390000001702.m.a ENSGT00940000155849.h.e ENSGT00940000160326.c.a ENSGT00950000182994.B.a.b.ib ENSGT00940000153969.a.d ENSGT00620000087961.a.b.a.b.a.b ENSGT00940000167336.g ENSGT00940000161249.g ENSGT00940000155867.a.b.e.a ENSGT00440000033504.B.b Common carp reference MODERN SPECIES 8 mgst1.2 (ENSCCRG00000078502) mgst1.1 (ENSCCRG00000028046) arhgef39 (ENSCCRG00000022093) rergla (ENSCCRG00000062704) ENSCCRG00000071533 ENSCCRG00000068066 mkrn1 (ENSCCRG00000016101) ENSCCRG00000016331 cnot4b (ENSCCRG00000016217) tmem178bb (ENSCCRG00000016350) mrps33 (ENSCCRG00000068537) braf (ENSCCRG00000016422) si:dkey-222f8.3 (ENSCCRG00000079607) tnnt2c (ENSCCRG00000074295) #19 cry1a (ENSCCRG00000077916) #21 btbd11a (ENSCCRG00000076780) #22 cyb5r3 (ENSCCRG00000065651) #16 podxl (ENSCCRG00000021228) ENSCCRG00000077222 podxl (ENSCCRG00000079437) mkln1 (ENSCCRG00000044893) net1 (ENSCCRG00000081166) gdi2 (ENSCCRG00000071952) ankrd16 (ENSCCRG00000042255) ENSCCRG00000042240 sema3aa (ENSCCRG00000010714) tspan11 (ENSCCRG00000020398) prmt8b (ENSCCRG00000065134) ENSCCRG00000016708 ENSCCRG00000030043 ENSCCRG00000020281 Golden-line barbel MODERN SPECIES 738 arhgef39 (ENSSGRG00000037655) rergla (ENSSGRG00000037657) ENSSGRG00000037658 TMEM121B (ENSSGRG00000037659) mkrn1 (ENSSGRG00000037661) ENSSGRG00000001282 cnot4b (ENSSGRG00000001600) tmem178bb (ENSSGRG00000002281) mrps33 (ENSSGRG00000002282) braf (ENSSGRG00000002312) si:dkey-222f8.3 (ENSSGRG00000005761) tnnt2c (ENSSGRG00000005762) #19 cry1a (ENSSGRG00000005770) #21 btbd11a (ENSSGRG00000006225) #22 cyb5r3 (ENSSGRG00000006687) #16 podxl (ENSSGRG00000006984) mkln1 (ENSSGRG00000006985) ENSSGRG00000007108 net1 (ENSSGRG00000007133) asb13a.2 (ENSSGRG00000008733) gdi2 (ENSSGRG00000008739) ankrd16 (ENSSGRG00000008969) ENSSGRG00000008981 sema3aa (ENSSGRG00000008988) tspan11 (ENSSGRG00000009221) prmt8b (ENSSGRG00000009236) ENSSGRG00000009422 ENSSGRG00000009432 Goldfish MODERN SPECIES 33 asb15b (ENSCARG00000005447) LMOD2 (ENSCARG00000005440) waslb (ENSCARG00000005435) TMEM229A (ENSCARG00000005429) gpr37b (ENSCARG00000005421) ENSCARG00000005409 ENSCARG00000005400 SMKR1 (ENSCARG00000005393) cd9b (ENSCARG00000005349) ano2b (ENSCARG00000004923) SYPL1 (ENSCARG00000004831) ENSCARG00000004162 pik3cg (ENSCARG00000003917) ENSCARG00000003182 ENSCARG00000003096 btbd11a (ENSCARG00000002806) #22 podxl (ENSCARG00000002727) podxl (ENSCARG00000002720) mkln1 (ENSCARG00000002671) net1 (ENSCARG00000002119) asb13a.2 (ENSCARG00000001921) ankrd16 (ENSCARG00000001916) ENSCARG00000001516 gdi2 (ENSCARG00000001389) prmt8b (ENSCARG00000000972) CRACR2A (ENSCARG00000000842) ENSCARG00000000829 ENSCARG00000000790 ENSCARG00000000767 ENSCARG00000000756 ENSCARG00000000746 Cyprininae ANCESTRAL SPECIES 223 ENSGT00390000006913.i.a ENSGT00390000007878.k ENSGT00940000153908.a.h ENSGT00440000033863.b ENSGT00940000161146.b ENSGT00940000165644.f.a ENSGT00940000154822.a.a ENSGT00950000183077.a.a.d ENSGT00390000000068.a.a.b ENSGT00390000015299.a.b.b.a.f.b ENSGT00390000011401.tb ENSGT00940000156154.j ENSGT00530000063825.A.c.e.e ENSGT00940000154709.a.a.g #19 ENSGT00940000155455.g.b #21 ENSGT00940000156419.b.b #22 ENSGT00940000153962.b.l.a #16 ENSGT00390000001702.m.b ENSGT00940000155849.h.f ENSGT00940000160326.c.b ENSGT00950000182994.B.a.b.jb ENSGT00940000153969.a.c ENSGT00620000087961.a.b.a.b.a.a ENSGT00940000167336.h ENSGT00940000161249.h ENSGT00940000155867.a.b.e.b ENSGT00390000006546 ENSGT00530000063745.b.d ENSGT00940000156144.a.b ENSGT00940000163299.B.b.b.j Goldfish DUPLICATION Goldfish MODERN SPECIES 2376 tmem178bb (ENSCARG00000058513) mrps33 (ENSCARG00000058535) braf (ENSCARG00000058715) si:dkey-222f8.3 (ENSCARG00000062750) tnnt2c (ENSCARG00000062770) #19 cry1a (ENSCARG00000062813) #21 btbd11a (ENSCARG00000064377) #22 cyb5r3 (ENSCARG00000064649) #16 mkln1 (ENSCARG00000065109) ENSCARG00000065344 net1 (ENSCARG00000065399) asb13a.1 (ENSCARG00000065557) gdi2 (ENSCARG00000065578) ENSCARG00000065793 ENSCARG00000065815 sema3aa (ENSCARG00000065866) Goldfish MODERN SPECIES 21 ANO6 (ENSCARG00000008732) ENSCARG00000009923 zdhhc17 (ENSCARG00000009966) csrp2 (ENSCARG00000009996) e2f7 (ENSCARG00000010011) rergla (ENSCARG00000010032) ENSCARG00000010044 mkrn1 (ENSCARG00000010065) cnot4b (ENSCARG00000010133) tmem178bb (ENSCARG00000010173) mrps33 (ENSCARG00000010184) braf (ENSCARG00000010227) si:dkey-222f8.3 (ENSCARG00000010821) tnnt2c (ENSCARG00000010836) #19 cry1a (ENSCARG00000010868) #21 btbd11a (ENSCARG00000010980) #22 cyb5r3 (ENSCARG00000011082) #16 mkln1 (ENSCARG00000011488) net1 (ENSCARG00000011590) asb13a.1 (ENSCARG00000011678) gdi2 (ENSCARG00000011726) ENSCARG00000012178 sema3aa (ENSCARG00000012281) tspan11 (ENSCARG00000013521) ENSCARG00000013540 ENSCARG00000013543 fnta (ENSCARG00000013547) gstp1.2 (ENSCARG00000013579) trpc3 (ENSCARG00000013595) ENSCARG00000013695 trim35-27 (ENSCARG00000013699) Cyprininae_a ANCESTRAL SPECIES 123 ENSGT00390000011980.a.i.b.b ENSGT00940000153908.a.h ENSGT00440000033863.b ENSGT00940000161146.b ENSGT00940000165644.f.a ENSGT00940000154822.a.a ENSGT00950000183077.a.a.d ENSGT00940000162201.o.d.a ENSGT00390000000068.a.a.b ENSGT00390000015299.a.b.b.a.f.b ENSGT00390000011401.tb ENSGT00940000156154.j ENSGT00530000063825.A.c.e.e ENSGT00940000154709.a.a.g #19 ENSGT00940000155455.g.b #21 ENSGT00940000156419.b.b #22 ENSGT00940000153962.b.l.a #16 ENSGT00390000001702.m.b ENSGT00940000155849.h.f ENSGT00940000160326.c.b ENSGT00950000182994.B.a.b.jb ENSGT00940000153969.a.c ENSGT00620000087961.a.b.a.b.a.a ENSGT00940000167336.h ENSGT00940000161249.h ENSGT00940000155867.a.b.e.b ENSGT00390000006546 ENSGT00530000063745.b.d ENSGT00940000156144.a.b ENSGT00940000163299.B.b.b.j Common carp reference MODERN SPECIES 36 mgst1.1 (ENSCCRG00000055104) lmo3 (ENSCCRG00000078113) arhgef39 (ENSCCRG00000059910) rergla (ENSCCRG00000066677) il17ra1a (ENSCCRG00000016165) ENSCCRG00000081214 ENSCCRG00000016156 mkrn1 (ENSCCRG00000081664) cnot4b (ENSCCRG00000045647) mrps33 (ENSCCRG00000064138) tmem178bb (ENSCCRG00000070254) braf (ENSCCRG00000045169) si:dkey-222f8.3 (ENSCCRG00000046054) tnnt2c (ENSCCRG00000060066) #19 cry1a (ENSCCRG00000071926) #21 btbd11a (ENSCCRG00000064579) #22 cyb5r3 (ENSCCRG00000047732) #16 mkln1 (ENSCCRG00000021153) net1 (ENSCCRG00000070124) asb13a.1 (ENSCCRG00000054229) gdi2 (ENSCCRG00000020991) ankrd16 (ENSCCRG00000035612) ENSCCRG00000069279 sema3aa (ENSCCRG00000002617) tspan11 (ENSCCRG00000034051) prmt8b (ENSCCRG00000016702) ENSCCRG00000078200 ENSCCRG00000055807 ENSCCRG00000026690 ENSCCRG00000075878 ENSCCRG00000074148 Golden-line barbel MODERN SPECIES lmo3 (ENSSGRG00000000230) arhgef39 (ENSSGRG00000000213) rergla (ENSSGRG00000000198) ENSSGRG00000000184 TMEM121B (ENSSGRG00000000178) mkrn1 (ENSSGRG00000000108) ENSSGRG00000000083 cnot4b (ENSSGRG00000000074) tmem178bb (ENSSGRG00000000073) mrps33 (ENSSGRG00000000071) mrps33 (ENSSGRG00000000070) braf (ENSSGRG00000000069) si:dkey-222f8.3 (ENSSGRG00000000068) tnnt2c (ENSSGRG00000000067) #19 cry1a (ENSSGRG00000000066) #21 btbd11a (ENSSGRG00000000064) #22 cyb5r3 (ENSSGRG00000000063) #16 ENSSGRG00000000062 mkln1 (ENSSGRG00000000061) net1 (ENSSGRG00000000059) ENSSGRG00000000058 ENSSGRG00000000057 gdi2 (ENSSGRG00000000056) ankrd16 (ENSSGRG00000000055) ENSSGRG00000000054 sema3aa (ENSSGRG00000000053) tspan11 (ENSSGRG00000000052) prmt8b (ENSSGRG00000000051) ENSSGRG00000000050 ENSSGRG00000000048 ENSSGRG00000000047 Zebrafish MODERN SPECIES 19 ENSDARG00000103215 ENSDARG00000104625 ENSDARG00000074873 ENSDARG00000095461 ENSDARG00000103365 il17ra1a (ENSDARG00000058244) TMEM121B (ENSDARG00000087319) mkrn1 (ENSDARG00000041665) cnot4b (ENSDARG00000007639) tmem178bb (ENSDARG00000006747) mrps33 (ENSDARG00000020015) braf (ENSDARG00000017661) si:dkey-222f8.3 (ENSDARG00000058366) tnnt2c (ENSDARG00000032242) #19 cry1a (ENSDARG00000045768) #21 btbd11a (ENSDARG00000063255) #22 cyb5r3 (ENSDARG00000005891) #16 podxl (ENSDARG00000031228) mkln1 (ENSDARG00000025576) net1 (ENSDARG00000032765) asb13a.2 (ENSDARG00000045765) asb13a.1 (ENSDARG00000079698) gdi2 (ENSDARG00000005451) ankrd16 (ENSDARG00000003822) ENSDARG00000070015 ENSDARG00000063299 sema3aa (ENSDARG00000019235) tspan11 (ENSDARG00000001781) prmt8b (ENSDARG00000045760) CRACR2A (ENSDARG00000045758) ENSDARG00000096153 Clupeocephala ANCESTRAL SPECIES 31 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154649.B ENSGT00940000157903 ENSGT00940000157742.b Otomorpha ANCESTRAL SPECIES 54 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154649.B ENSGT00940000157903 ENSGT00940000157742.b Clupeiformes ANCESTRAL SPECIES 135 ENSGT00940000158037 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00940000160625.r.a ENSGT00390000018903.n ENSGT00940000155213.y ENSGT00940000166064 ENSGT00940000157389 ENSGT00940000161531.a.b Denticle herring MODERN SPECIES 8 slc17a8 (ENSDCDG00000021765) arntl2 (ENSDCDG00000021699) si:ch211-245j22.3 (ENSDCDG00000021691) ppfibp1b (ENSDCDG00000010833) ##17 endouc (ENSDCDG00000010190) POLR3B (ENSDCDG00000010166) rfx4 (ENSDCDG00000010083) ric8b (ENSDCDG00000010058) ENSDCDG00000010049 tmem263 (ENSDCDG00000010043) si:ch73-62b13.1 (ENSDCDG00000010034) ENSDCDG00000010025 mterf2 (ENSDCDG00000010021) ##20 zgc:153031 (ENSDCDG00000010013) cry1b (ENSDCDG00000009957) ##21 ABTB3 (ENSDCDG00000009838) ##22 mlc1 (ENSDCDG00000009776) panx2 (ENSDCDG00000009764) ENSDCDG00000008841 ENSDCDG00000008816 nfat5a (ENSDCDG00000008808) hprt1l (ENSDCDG00000008797) wwox (ENSDCDG00000008789) mafb (ENSDCDG00000008783) ENSDCDG00000008780 cib1 (ENSDCDG00000008778) ENSDCDG00000008773 ENSDCDG00000008766 unc45a (ENSDCDG00000007475) MAN2A2 (ENSDCDG00000007021) ENSDCDG00000006874 Atlantic herring MODERN SPECIES 19 cnot1 (ENSCHAG00000001898) ELMO3 (ENSCHAG00000002443) ENSCHAG00000005943 ENSCHAG00000006021 MMP15 (ENSCHAG00000007818) zpd (ENSCHAG00000007967) vac14 (ENSCHAG00000007990) zgc:162634 (ENSCHAG00000008114) pth1a (ENSCHAG00000008140) btbd10a (ENSCHAG00000008166) bmal1a (ENSCHAG00000008334) ENSCHAG00000009391 zgc:153031 (ENSCHAG00000009397) cry1b (ENSCHAG00000009447) ##21 enpp4 (ENSCHAG00000010035) ABTB3 (ENSCHAG00000010198) ##22 mlc1 (ENSCHAG00000010595) panx2 (ENSCHAG00000010623) ENSCHAG00000010658 ENSCHAG00000010883 nfat5a (ENSCHAG00000010893) ENSCHAG00000010921 ENSCHAG00000010943 MAF (ENSCHAG00000010958) SYMPK (ENSCHAG00000010990) wwp2 (ENSCHAG00000011365) polr2c (ENSCHAG00000016818) coq9 (ENSCHAG00000016721) ciapin1 (ENSCHAG00000016828) prmt7 (ENSCHAG00000016897) ENSCHAG00000017946 Otophysi ANCESTRAL SPECIES 141 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00950000183051.b.b ENSGT00390000002362 ENSGT00390000018698 ENSGT00530000063956.b.a ENSGT01030000235114 ENSGT00390000015057 Characiphysae ANCESTRAL SPECIES 25 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a.g ENSGT00950000183051.b.b ENSGT00390000002362 ENSGT00390000018698 ENSGT00530000063956.b.a ENSGT01030000235114 ENSGT00390000015057 ENSGT00940000155218.B.k ENSGT00390000005410 ENSGT00940000166270.d Channel catfish MODERN SPECIES 23 nr1h4 (ENSIPUG00000017144) slc17a8 (ENSIPUG00000017108) arntl2 (ENSIPUG00000017084) si:ch211-245j22.3 (ENSIPUG00000017063) ppfibp1 (ENSIPUG00000016913) ##17 endouc (ENSIPUG00000016895) Polr3b (ENSIPUG00000016720) rfx4 (ENSIPUG00000016674) ric8b (ENSIPUG00000016638) ENSIPUG00000016625 tmem263 (ENSIPUG00000016603) si:ch73-62b13.1 (ENSIPUG00000016589) mterf2 (ENSIPUG00000016582) ##20 zgc:153031 (ENSIPUG00000016538) Cry1 (ENSIPUG00000016449) ##21 btbd11 (ENSIPUG00000016327) ##22 mlc1 (ENSIPUG00000016294) panx2 (ENSIPUG00000016277) trabd (ENSIPUG00000016257) selenoo1 (ENSIPUG00000016240) mapk12a (ENSIPUG00000016203) Mtss1l (ENSIPUG00000016017) ENSIPUG00000015978 uri1 (ENSIPUG00000015919) spata2l (ENSIPUG00000015898) pdf (ENSIPUG00000015911) si:dkey-238o13.4 (ENSIPUG00000015870) vps9d1 (ENSIPUG00000015856) CDH13 (ENSIPUG00000015813) MLYCD (ENSIPUG00000015793) ENSIPUG00000015755 Characiphysae_b ANCESTRAL SPECIES 22 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a.g ENSGT00950000183051.b.b ENSGT00390000002362 ENSGT00390000018698 ENSGT00530000063956.b.a ENSGT01030000235114 ENSGT00390000015057 ENSGT00940000155218.B.k ENSGT00390000005410 ENSGT00940000166270.d Characoidei ANCESTRAL SPECIES 13 ENSGT00940000158037 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a.g ENSGT00950000183051.b.b ENSGT00390000002362 ENSGT00390000018698 ENSGT00530000063956.b.a ENSGT01030000235114 ENSGT00390000015057 ENSGT00940000155218.B.k ENSGT00390000005410 ENSGT00940000166270.d Red-bellied piranha MODERN SPECIES slc17a8 (ENSPNAG00000018678) arntl2 (ENSPNAG00000018734) si:ch211-245j22.3 (ENSPNAG00000018767) ppfibp1b (ENSPNAG00000018871) ##17 endouc (ENSPNAG00000018907) POLR3B (ENSPNAG00000019044) rfx4 (ENSPNAG00000019169) ric8b (ENSPNAG00000019187) ENSPNAG00000019232 tmem263 (ENSPNAG00000019249) si:ch73-62b13.1 (ENSPNAG00000019260) ENSPNAG00000019268 mterf2 (ENSPNAG00000019282) ##20 zgc:153031 (ENSPNAG00000003587) cry1b (ENSPNAG00000019322) ##21 ABTB3 (ENSPNAG00000019382) ##22 mlc1 (ENSPNAG00000019402) panx2 (ENSPNAG00000019428) trabd (ENSPNAG00000019439) selenoo1 (ENSPNAG00000019449) mapk12a (ENSPNAG00000019493) mtss1la (ENSPNAG00000006515) ENSPNAG00000019608 uri1 (ENSPNAG00000019618) pdf (ENSPNAG00000019626) ENSPNAG00000019633 si:dkey-238o13.4 (ENSPNAG00000019653) vps9d1 (ENSPNAG00000019676) CDH13 (ENSPNAG00000019772) mlycd (ENSPNAG00000005878) ENSPNAG00000019810 Mexicana tetra MODERN SPECIES 9 nr1h4 (ENSAMXG00000020274) slc17a8 (ENSAMXG00000020256) arntl2 (ENSAMXG00000020233) si:ch211-245j22.3 (ENSAMXG00000020218) ppfibp1b (ENSAMXG00000020196) ##17 endouc (ENSAMXG00000020172) POLR3B (ENSAMXG00000020163) rfx4 (ENSAMXG00000020148) ric8b (ENSAMXG00000020135) ENSAMXG00000020124 tmem263 (ENSAMXG00000037305) si:ch73-62b13.1 (ENSAMXG00000042749) mterf2 (ENSAMXG00000024936) ##20 zgc:153031 (ENSAMXG00000041628) cry1b (ENSAMXG00000020084) ##21 ABTB3 (ENSAMXG00000020049) ##22 mlc1 (ENSAMXG00000006798) panx2 (ENSAMXG00000020031) trabd (ENSAMXG00000039336) selenoo1 (ENSAMXG00000020012) mapk12a (ENSAMXG00000019974) mtss1la (ENSAMXG00000019955) ENSAMXG00000043502 uri1 (ENSAMXG00000031880) pdf (ENSAMXG00000019932) ENSAMXG00000035773 si:dkey-238o13.4 (ENSAMXG00000034754) vps9d1 (ENSAMXG00000029363) ENSAMXG00000039399 CDH13 (ENSAMXG00000019851) mlycd (ENSAMXG00000040324) Electric eel MODERN SPECIES 482 ENSEEEG00000012039 ##22 mlc1 (ENSEEEG00000012044) panx2 (ENSEEEG00000012050) trabd (ENSEEEG00000012054) selenoo1 (ENSEEEG00000012060) mapk12a (ENSEEEG00000012094) ENSEEEG00000012581 ENSEEEG00000012582 ENSEEEG00000012585 uri1 (ENSEEEG00000012587) pdf (ENSEEEG00000012588) ENSEEEG00000012589 si:dkey-238o13.4 (ENSEEEG00000012590) vps9d1 (ENSEEEG00000012592) ENSEEEG00000012594 Cyprinoidei ANCESTRAL SPECIES 10 ENSGT00940000158037 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00950000183051.b.b ENSGT00390000002362 ENSGT00390000018698 ENSGT00530000063956.b.a ENSGT01030000235114 ENSGT00390000015057 ENSGT00940000153533.b ENSGT00390000014299 ENSGT00940000164450.b Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 49 ENSGT00390000013899.a.a.m.b ENSGT00940000164185.a ENSGT00530000063817.b.a.a ##20 ENSGT00940000165780.b ENSGT00940000155455.h.b ##21 ENSGT00940000156419.a.a ##22 ENSGT00390000015442 ENSGT00940000153972.C.b ENSGT00390000009067.e ENSGT00390000005508.a.a.a ENSGT00940000156189.a.a.b ENSGT00950000183156.a.a.f ENSGT00950000183051.b.b.d ENSGT00390000002362.q ENSGT00390000018698.e ENSGT00530000063956.b.a.b ENSGT01030000235114.b ENSGT00390000015057.g ENSGT00940000153533.b.b ENSGT00390000014299.g ENSGT00940000164450.b.a Goldfish MODERN SPECIES 9 UBE2N (ENSCARG00000006726) ENSCARG00000006720 ENSCARG00000006705 nr1h4 (ENSCARG00000005625) slc17a8 (ENSCARG00000004747) arntl2 (ENSCARG00000004587) ppfibp1b (ENSCARG00000004390) ##17 endouc (ENSCARG00000004308) POLR3B (ENSCARG00000004197) rfx4 (ENSCARG00000004102) ENSCARG00000004080 ric8b (ENSCARG00000003983) si:ch73-62b13.1 (ENSCARG00000003942) mterf2 (ENSCARG00000003924) ##20 zgc:153031 (ENSCARG00000003901) ABTB3 (ENSCARG00000003717) ##22 mlc1 (ENSCARG00000003641) panx2 (ENSCARG00000003632) trabd (ENSCARG00000003610) selenoo1 (ENSCARG00000003584) mapk12a (ENSCARG00000003459) mtss1la (ENSCARG00000003351) ENSCARG00000003324 uri1 (ENSCARG00000003315) pdf (ENSCARG00000003310) ENSCARG00000003305 si:dkey-238o13.4 (ENSCARG00000003299) vps9d1 (ENSCARG00000003279) utp4 (ENSCARG00000003247) wfdc1 (ENSCARG00000003234) ENSCARG00000003224 Cyprininae_a ANCESTRAL SPECIES 25 ENSGT00390000013899.a.a.m.b ENSGT00940000164185.a ENSGT00530000063817.b.a.a ##20 ENSGT00940000165780.b ENSGT00940000155455.h.b ##21 ENSGT00940000156419.a.a ##22 ENSGT00390000015442 ENSGT00940000153972.C.b ENSGT00390000009067.e ENSGT00390000005508.a.a.a ENSGT00940000156189.a.a.b ENSGT00950000183156.a.a.f ENSGT00950000183051.b.b.d ENSGT00390000002362.q ENSGT00390000018698.e ENSGT00530000063956.b.a.b ENSGT01030000235114.b ENSGT00390000015057.g ENSGT00940000153533.b.b ENSGT00390000014299.g ENSGT00940000164450.b.a Common carp reference MODERN SPECIES 19 ENSCCRG00000003271 nr1h4 (ENSCCRG00000011134) slc17a8 (ENSCCRG00000003403) arntl2 (ENSCCRG00000011153) si:ch211-245j22.3 (ENSCCRG00000026910) ppfibp1b (ENSCCRG00000002817) ##17 endouc (ENSCCRG00000012244) POLR3B (ENSCCRG00000004228) rfx4 (ENSCCRG00000052092) ric8b (ENSCCRG00000066601) ENSCCRG00000072901 tmem263 (ENSCCRG00000082365) si:ch73-62b13.1 (ENSCCRG00000018278) mterf2 (ENSCCRG00000018281) ##20 cry1b (ENSCCRG00000061684) ##21 ENSCCRG00000015785 ##22 mlc1 (ENSCCRG00000043442) panx2 (ENSCCRG00000018915) trabd (ENSCCRG00000018878) selenoo1 (ENSCCRG00000082907) mapk12a (ENSCCRG00000018095) mtss1la (ENSCCRG00000065446) ENSCCRG00000060225 uri1 (ENSCCRG00000079026) si:dkey-238o13.4 (ENSCCRG00000060620) ENSCCRG00000077464 vps9d1 (ENSCCRG00000017871) utp4 (ENSCCRG00000017768) wfdc1 (ENSCCRG00000017763) ENSCCRG00000011764 kcng4a (ENSCCRG00000055874) Golden-line barbel MODERN SPECIES 486 ENSSGRG00000030369 ENSSGRG00000030371 nr1h4 (ENSSGRG00000030374) slc17a8 (ENSSGRG00000030670) si:ch211-245j22.3 (ENSSGRG00000030676) ppfibp1b (ENSSGRG00000030705) ##17 endouc (ENSSGRG00000032878) POLR3B (ENSSGRG00000032885) rfx4 (ENSSGRG00000033203) ric8b (ENSSGRG00000033210) ENSSGRG00000033225 si:ch73-62b13.1 (ENSSGRG00000033227) mterf2 (ENSSGRG00000033230) ##20 zgc:153031 (ENSSGRG00000033234) cry1b (ENSSGRG00000033236) ##21 ABTB3 (ENSSGRG00000033238) ##22 mlc1 (ENSSGRG00000033314) panx2 (ENSSGRG00000033315) trabd (ENSSGRG00000033317) selenoo1 (ENSSGRG00000033319) mapk12a (ENSSGRG00000033322) mtss1la (ENSSGRG00000033744) ENSSGRG00000033909 uri1 (ENSSGRG00000033910) pdf (ENSSGRG00000033911) ENSSGRG00000033912 si:dkey-238o13.4 (ENSSGRG00000033913) vps9d1 (ENSSGRG00000033916) utp4 (ENSSGRG00000033963) wfdc1 (ENSSGRG00000034080) ENSSGRG00000034083 Cyprininae ANCESTRAL SPECIES 484 ENSGT00530000063817.b.a.b ##20 ENSGT00940000165780.a ENSGT00940000155455.h.a ##21 ENSGT00940000156419.a.b ##22 ENSGT00940000153972.C.a ENSGT00390000009067.d ENSGT00390000005508.a.a.b ENSGT00940000156189.a.a.a ENSGT00950000183156.a.a.e ENSGT00950000183051.b.b.c ENSGT00390000002362.r ENSGT00530000063956.b.a.a ENSGT01030000235114.a ENSGT00390000015057.h ENSGT00940000153533.b.a ENSGT00390000014299.h ENSGT00940000164450.b.b ENSGT00940000156938.f.b ENSGT00390000002381.b.a Goldfish DUPLICATION Goldfish MODERN SPECIES 37 ENSCARG00000039981 ENSCARG00000039964 nr1h4 (ENSCARG00000039655) slc17a8 (ENSCARG00000039515) arntl2 (ENSCARG00000039202) si:ch211-245j22.3 (ENSCARG00000039167) ppfibp1b (ENSCARG00000038782) ##17 rfx4 (ENSCARG00000038580) ric8b (ENSCARG00000038471) ENSCARG00000038443 tmem263 (ENSCARG00000038431) si:ch73-62b13.1 (ENSCARG00000038422) mterf2 (ENSCARG00000038411) ##20 zgc:153031 (ENSCARG00000038381) cry1b (ENSCARG00000038306) ##21 ABTB3 (ENSCARG00000037451) ##22 mlc1 (ENSCARG00000037214) panx2 (ENSCARG00000037126) trabd (ENSCARG00000037099) GAN (ENSCARG00000037011) CMIP (ENSCARG00000036708) ENSCARG00000036521 plcg2 (ENSCARG00000036396) meak7 (ENSCARG00000036367) cotl1 (ENSCARG00000036354) klhl36 (ENSCARG00000036341) zgc:56622 (ENSCARG00000036307) tat (ENSCARG00000036296) ENSCARG00000036289 zgc:112052 (ENSCARG00000036284) UQCRFS1 (ENSCARG00000036279) Goldfish MODERN SPECIES 809 ABTB3 (ENSCARG00000031300) ##22 Cyprininae_a ANCESTRAL SPECIES 15 ENSGT00940000158187.a ENSGT00940000160423.a.a ENSGT00940000166645.c ENSGT01050000244951.a.b.a.b.a.a ##17 ENSGT00530000063825.A.c.f.b ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a.h ENSGT00390000014700.a.b ENSGT00940000165765 ENSGT00390000013899.a.a.n ENSGT00390000013899.a.a.m.a ENSGT00940000164185.b ENSGT00530000063817.b.a.b ##20 ENSGT00940000165780.a ENSGT00940000155455.h.a ##21 ENSGT00940000156419.a.b ##22 ENSGT00940000153972.C.a ENSGT00390000009067.d ENSGT00390000005508.a.a.b ENSGT00940000156189.a.a.a ENSGT00950000183156.a.a.e ENSGT00950000183051.b.b.c ENSGT00390000002362.r ENSGT00530000063956.b.a.a ENSGT01030000235114.a ENSGT00390000015057.h ENSGT00940000153533.b.a ENSGT00390000014299.h ENSGT00940000164450.b.b ENSGT00940000156938.f.b ENSGT00390000002381.b.a Common carp reference MODERN SPECIES 9 ENSCCRG00000011059 ENSCCRG00000011129 nr1h4 (ENSCCRG00000071484) slc17a8 (ENSCCRG00000011142) arntl2 (ENSCCRG00000059780) si:ch211-245j22.3 (ENSCCRG00000054010) ppfibp1b (ENSCCRG00000011403) ##17 endouc (ENSCCRG00000040446) rfx4 (ENSCCRG00000052061) ric8b (ENSCCRG00000052067) tmem263 (ENSCCRG00000078909) si:ch73-62b13.1 (ENSCCRG00000063733) mterf2 (ENSCCRG00000015779) ##20 zgc:153031 (ENSCCRG00000015782) cry1b (ENSCCRG00000074405) ##21 ENSCCRG00000022156 ##22 panx2 (ENSCCRG00000018939) trabd (ENSCCRG00000054807) selenoo1 (ENSCCRG00000063958) mapk12a (ENSCCRG00000078090) mtss1la (ENSCCRG00000017947) ENSCCRG00000056053 uri1 (ENSCCRG00000017903) ENSCCRG00000002909 si:dkey-238o13.4 (ENSCCRG00000076860) vps9d1 (ENSCCRG00000002930) wfdc1 (ENSCCRG00000003102) utp4 (ENSCCRG00000003012) ENSCCRG00000059741 ENSCCRG00000071277 kcng4a (ENSCCRG00000071413) Golden-line barbel MODERN SPECIES 54 ENSSGRG00000038770 nr1h4 (ENSSGRG00000038774) slc17a8 (ENSSGRG00000038775) arntl2 (ENSSGRG00000038777) si:ch211-245j22.3 (ENSSGRG00000038799) ppfibp1b (ENSSGRG00000038845) ##17 endouc (ENSSGRG00000041804) POLR3B (ENSSGRG00000041833) rfx4 (ENSSGRG00000041857) ric8b (ENSSGRG00000041860) ENSSGRG00000041879 ENSSGRG00000041899 tmem263 (ENSSGRG00000041900) si:ch73-62b13.1 (ENSSGRG00000041901) cry1b (ENSSGRG00000041906) ##21 ABTB3 (ENSSGRG00000042000) ##22 mlc1 (ENSSGRG00000042010) panx2 (ENSSGRG00000042011) trabd (ENSSGRG00000042015) selenoo1 (ENSSGRG00000042064) mapk12a (ENSSGRG00000042071) mtss1la (ENSSGRG00000042074) ENSSGRG00000042356 uri1 (ENSSGRG00000042359) ENSSGRG00000042360 si:dkey-238o13.4 (ENSSGRG00000042361) vps9d1 (ENSSGRG00000042362) utp4 (ENSSGRG00000042365) wfdc1 (ENSSGRG00000042452) kcng4a (ENSSGRG00000042454) ENSSGRG00000042456 Zebrafish MODERN SPECIES 9 nr1h4 (ENSDARG00000057741) slc17a8 (ENSDARG00000057728) arntl2 (ENSDARG00000041381) si:ch211-245j22.3 (ENSDARG00000041379) ppfibp1b (ENSDARG00000100057) ##17 endouc (ENSDARG00000112234) POLR3B (ENSDARG00000062915) rfx4 (ENSDARG00000026395) ric8b (ENSDARG00000005972) ENSDARG00000062893 tmem263 (ENSDARG00000030465) si:ch73-62b13.1 (ENSDARG00000093269) mterf2 (ENSDARG00000086405) ##20 zgc:153031 (ENSDARG00000068876) cry1b (ENSDARG00000011583) ##21 ABTB3 (ENSDARG00000063040) ##22 mlc1 (ENSDARG00000063026) panx2 (ENSDARG00000063019) trabd (ENSDARG00000010445) selenoo1 (ENSDARG00000041951) mapk12a (ENSDARG00000042021) mtss1la (ENSDARG00000028943) ENSDARG00000087394 uri1 (ENSDARG00000026664) pdf (ENSDARG00000013950) ENSDARG00000068814 si:dkey-238o13.4 (ENSDARG00000078847) vps9d1 (ENSDARG00000019195) utp4 (ENSDARG00000017675) wfdc1 (ENSDARG00000058003) ENSDARG00000013775 Euteleosteomorpha ANCESTRAL SPECIES 20 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154649.B ENSGT00940000157903 Acanthomorphata ANCESTRAL SPECIES 28 ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00730000111305 ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154649.B Euacanthomorphacea ANCESTRAL SPECIES 7 ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00730000111305 ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000170767 Percomorphaceae ANCESTRAL SPECIES 4 ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000170767 Tiger tail seahorse MODERN SPECIES 438 hdhd5 (ENSHCOG00000008344) ENSHCOG00000000821 SLC15A5 (ENSHCOG00000008335) tmem17 (ENSHCOG00000008318) agbl2 (ENSHCOG00000008296) fnbp4 (ENSHCOG00000008272) ENSHCOG00000008247 ENSHCOG00000008238 cnot2 (ENSHCOG00000008229) WASHC4 (ENSHCOG00000008193) ENSHCOG00000008123 etfbkmt (ENSHCOG00000008050) mterf2 (ENSHCOG00000008023) ##20 si:ch73-62b13.1 (ENSHCOG00000008015) cry1b (ENSHCOG00000008002) ##21 ABTB3 (ENSHCOG00000000265) ##22 mlc1 (ENSHCOG00000007949) panx2 (ENSHCOG00000007874) trabd (ENSHCOG00000007825) selenoo1 (ENSHCOG00000007819) mapk12a (ENSHCOG00000007813) mtss1la (ENSHCOG00000007791) ENSHCOG00000007774 ENSHCOG00000007733 ENSHCOG00000007731 uri1 (ENSHCOG00000007724) zgc:112052 (ENSHCOG00000007719) UQCRFS1 (ENSHCOG00000007699) rxylt1 (ENSHCOG00000007686) SRGAP1 (ENSHCOG00000007646) parp12a (ENSHCOG00000007607) Percomorphaceae_B ANCESTRAL SPECIES 5 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00940000169873 ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 Percomorphaceae_C ANCESTRAL SPECIES 5 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00940000169873 ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Percomorphaceae_D ANCESTRAL SPECIES 5 ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Anabantaria ANCESTRAL SPECIES 5 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Zig-zag eel MODERN SPECIES 20 ENSMAMG00000026887 tmem17 (ENSMAMG00000028184) agbl2 (ENSMAMG00000002743) ENSMAMG00000026251 fnbp4 (ENSMAMG00000002707) ENSMAMG00000002694 ENSMAMG00000002682 cnot2 (ENSMAMG00000002615) ENSMAMG00000002499 ENSMAMG00000002458 etfbkmt (ENSMAMG00000002442) si:ch73-62b13.1 (ENSMAMG00000002429) mterf2 (ENSMAMG00000002420) ##20 zgc:153031 (ENSMAMG00000002403) cry1b (ENSMAMG00000002323) ##21 ENSMAMG00000002297 ##22 mlc1 (ENSMAMG00000002215) panx2 (ENSMAMG00000002172) trabd (ENSMAMG00000002162) selenoo1 (ENSMAMG00000002133) mapk12a (ENSMAMG00000002080) mtss1la (ENSMAMG00000001995) ENSMAMG00000001982 ENSMAMG00000001971 ENSMAMG00000026253 uri1 (ENSMAMG00000001930) zgc:112052 (ENSMAMG00000001918) ENSMAMG00000001906 rxylt1 (ENSMAMG00000001897) ENSMAMG00000001821 ENSMAMG00000001797 Anabantoidei ANCESTRAL SPECIES 5 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Climbing perch MODERN SPECIES 19 ENSATEG00000018877 ENSATEG00000018870 tmem17 (ENSATEG00000018865) agbl2 (ENSATEG00000018728) fnbp4 (ENSATEG00000018699) ENSATEG00000018690 lrrc10 (ENSATEG00000018675) cnot2 (ENSATEG00000018641) ENSATEG00000018550 ENSATEG00000018518 etfbkmt (ENSATEG00000018503) si:ch73-62b13.1 (ENSATEG00000018494) mterf2 (ENSATEG00000018492) ##20 zgc:153031 (ENSATEG00000018425) cry1b (ENSATEG00000018409) ##21 ENSATEG00000018396 ##22 mlc1 (ENSATEG00000018322) panx2 (ENSATEG00000018299) trabd (ENSATEG00000018262) selenoo1 (ENSATEG00000018247) mapk12a (ENSATEG00000018208) mtss1la (ENSATEG00000018176) ENSATEG00000030181 ENSATEG00000018154 ENSATEG00000018139 uri1 (ENSATEG00000018125) zgc:112052 (ENSATEG00000018112) ENSATEG00000018103 rxylt1 (ENSATEG00000018096) ENSATEG00000018036 ENSATEG00000018023 Siamese fighting fish MODERN SPECIES 17 ENSBSLG00000008338 ENSBSLG00000008359 tmem17 (ENSBSLG00000008372) agbl2 (ENSBSLG00000008399) fnbp4 (ENSBSLG00000008465) bscl2 (ENSBSLG00000008770) ENSBSLG00000008773 cnot2 (ENSBSLG00000008783) WASHC4 (ENSBSLG00000009433) ENSBSLG00000010739 etfbkmt (ENSBSLG00000011196) si:ch73-62b13.1 (ENSBSLG00000011613) mterf2 (ENSBSLG00000011654) ##20 zgc:153031 (ENSBSLG00000011707) cry1b (ENSBSLG00000011854) ##21 ABTB3 (ENSBSLG00000013333) ##22 ENSBSLG00000013839 mlc1 (ENSBSLG00000013847) panx2 (ENSBSLG00000013857) trabd (ENSBSLG00000013867) selenoo1 (ENSBSLG00000013882) mapk12a (ENSBSLG00000013965) mtss1la (ENSBSLG00000015248) ENSBSLG00000016706 ENSBSLG00000017059 ENSBSLG00000017081 uri1 (ENSBSLG00000017104) zgc:112052 (ENSBSLG00000017136) ENSBSLG00000017154 rxylt1 (ENSBSLG00000017166) SRGAP1 (ENSBSLG00000017254) Carangaria ANCESTRAL SPECIES 6 ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Pleuronectoidei ANCESTRAL SPECIES ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Turbot MODERN SPECIES 1 ccdc34 (ENSSMAG00000009757) ENSSMAG00000009765 agbl2 (ENSSMAG00000009802) tmem17 (ENSSMAG00000029401) fnbp4 (ENSSMAG00000009825) ENSSMAG00000009836 ENSSMAG00000009849 cnot2 (ENSSMAG00000009857) ENSSMAG00000009936 ENSSMAG00000010038 etfbkmt (ENSSMAG00000010063) si:ch73-62b13.1 (ENSSMAG00000010072) mterf2 (ENSSMAG00000010100) ##20 zgc:153031 (ENSSMAG00000010104) cry1b (ENSSMAG00000010112) ##21 ENSSMAG00000010133 ##22 mlc1 (ENSSMAG00000010178) PANX (ENSSMAG00000010213) trabd (ENSSMAG00000010224) selenoo1 (ENSSMAG00000010268) mapk12a (ENSSMAG00000010338) mtss1la (ENSSMAG00000010358) ENSSMAG00000010554 ENSSMAG00000010572 uri1 (ENSSMAG00000010594) zgc:112052 (ENSSMAG00000010602) ENSSMAG00000010608 rxylt1 (ENSSMAG00000010617) ENSSMAG00000010623 ENSSMAG00000010688 parp12a (ENSSMAG00000010702) Tongue sole MODERN SPECIES 16 ENSCSEG00000012280 ENSCSEG00000012257 RFX7 (ENSCSEG00000012248) ENSCSEG00000012233 rsl24d1 (ENSCSEG00000012226) ENSCSEG00000012222 ENSCSEG00000010297 ENSCSEG00000010082 CYP19A1 (ENSCSEG00000010049) ENSCSEG00000010037 CLPX (ENSCSEG00000010016) ENSCSEG00000009997 mterf2 (ENSCSEG00000009994) ##20 zgc:153031 (ENSCSEG00000009990) cry1b (ENSCSEG00000009961) ##21 ABTB3 (ENSCSEG00000009658) ##22 mlc1 (ENSCSEG00000009581) panx2 (ENSCSEG00000009566) trabd (ENSCSEG00000009543) selenoo1 (ENSCSEG00000009527) mapk12a (ENSCSEG00000009503) mtss1la (ENSCSEG00000009429) ENSCSEG00000009386 ENSCSEG00000009372 ENSCSEG00000009361 uri1 (ENSCSEG00000009324) UQCRFS1 (ENSCSEG00000009313) zgc:112052 (ENSCSEG00000009305) rxylt1 (ENSCSEG00000009296) SRGAP1 (ENSCSEG00000009265) ENSCSEG00000009245 Carangaria_A ANCESTRAL SPECIES ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526.n ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Seriola ANCESTRAL SPECIES 5 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526.n ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Greater amberjack MODERN SPECIES 82 SLC15A5 (ENSSDUG00000020060) ENSSDUG00000020083 tmem17 (ENSSDUG00000020090) agbl2 (ENSSDUG00000020103) fnbp4 (ENSSDUG00000020121) bscl2 (ENSSDUG00000020154) ENSSDUG00000020159 cnot2 (ENSSDUG00000020166) WASHC4 (ENSSDUG00000020208) ENSSDUG00000020315 etfbkmt (ENSSDUG00000020335) si:ch73-62b13.1 (ENSSDUG00000020343) mterf2 (ENSSDUG00000020350) ##20 zgc:153031 (ENSSDUG00000020355) cry1b (ENSSDUG00000020364) ##21 ABTB3 (ENSSDUG00000020388) ##22 mlc1 (ENSSDUG00000020410) panx2 (ENSSDUG00000020478) trabd (ENSSDUG00000020489) selenoo1 (ENSSDUG00000020498) mapk12a (ENSSDUG00000020510) mtss1la (ENSSDUG00000020575) ENSSDUG00000020633 ENSSDUG00000020692 ENSSDUG00000020697 uri1 (ENSSDUG00000020706) zgc:112052 (ENSSDUG00000000077) UQCRFS1 (ENSSDUG00000000124) rxylt1 (ENSSDUG00000000144) ENSSDUG00000000154 SRGAP1 (ENSSDUG00000000168) Yellowtail amberjack MODERN SPECIES 2945 SLC15A5 (ENSSLDG00000011120) ENSSLDG00000011107 tmem17 (ENSSLDG00000011093) ENSSLDG00000011074 fnbp4 (ENSSLDG00000011039) bscl2 (ENSSLDG00000011024) ENSSLDG00000011007 cnot2 (ENSSLDG00000010952) WASHC4 (ENSSLDG00000010814) ENSSLDG00000010755 etfbkmt (ENSSLDG00000010743) si:ch73-62b13.1 (ENSSLDG00000010732) mterf2 (ENSSLDG00000010722) ##20 zgc:153031 (ENSSLDG00000010677) cry1b (ENSSLDG00000010617) ##21 ABTB3 (ENSSLDG00000010519) ##22 mlc1 (ENSSLDG00000010455) panx2 (ENSSLDG00000010427) trabd (ENSSLDG00000010402) selenoo1 (ENSSLDG00000010376) mapk12a (ENSSLDG00000010324) mtss1la (ENSSLDG00000010218) ENSSLDG00000010170 ENSSLDG00000010155 ENSSLDG00000010139 uri1 (ENSSLDG00000010119) zgc:112052 (ENSSLDG00000010101) UQCRFS1 (ENSSLDG00000010090) rxylt1 (ENSSLDG00000010075) SRGAP1 (ENSSLDG00000009963) parp12a (ENSSLDG00000009897) Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 1349 ENSLCAG00010001448 ##22 Barramundi perch MODERN SPECIES 97 ENSLCAG00010018947 tmem17 (ENSLCAG00010018950) agbl2 (ENSLCAG00010018954) fnbp4 (ENSLCAG00010018962) ENSLCAG00010018965 ENSLCAG00010018966 cnot2 (ENSLCAG00010018975) WASHC4 (ENSLCAG00010019060) ENSLCAG00010019301 etfbkmt (ENSLCAG00010019304) si:ch73-62b13.1 (ENSLCAG00010019306) ENSLCAG00010019307 mterf2 (ENSLCAG00010019308) ##20 zgc:153031 (ENSLCAG00010019310) cry1b (ENSLCAG00010019316) ##21 ENSLCAG00010019370 ##22 mlc1 (ENSLCAG00010019546) panx2 (ENSLCAG00010019554) trabd (ENSLCAG00010019559) selenoo1 (ENSLCAG00010019568) mapk12a (ENSLCAG00010019572) mtss1la (ENSLCAG00010019595) ENSLCAG00010019639 ENSLCAG00010019645 ENSLCAG00010019646 uri1 (ENSLCAG00010019650) zgc:112052 (ENSLCAG00010019656) UQCRFS1 (ENSLCAG00010019659) rxylt1 (ENSLCAG00010019660) SRGAP1 (ENSLCAG00010019799) ENSLCAG00010020849 Eupercaria ANCESTRAL SPECIES 6 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Tetraodontidae ANCESTRAL SPECIES 11 ENSGT00730000111271 ENSGT00940000158916 ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000163916 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Tetraodon MODERN SPECIES 4 RAB19 (ENSTNIG00000006650) SLC15A5 (ENSTNIG00000008349) tmem17 (ENSTNIG00000001219) agbl2 (ENSTNIG00000008350) fnbp4 (ENSTNIG00000008351) bscl2 (ENSTNIG00000008352) ENSTNIG00000008353 cnot2 (ENSTNIG00000008354) WASHC4 (ENSTNIG00000008355) ENSTNIG00000008356 etfbkmt (ENSTNIG00000008357) si:ch73-62b13.1 (ENSTNIG00000008358) mterf2 (ENSTNIG00000008359) ##20 zgc:153031 (ENSTNIG00000008360) ENSTNIG00000008361 ABTB3 (ENSTNIG00000008362) ##22 mlc1 (ENSTNIG00000008363) panx2 (ENSTNIG00000008364) trabd (ENSTNIG00000008365) selenoo1 (ENSTNIG00000008366) mapk12a (ENSTNIG00000008367) mtss1la (ENSTNIG00000008368) ENSTNIG00000008369 ENSTNIG00000008370 uri1 (ENSTNIG00000008371) zgc:112052 (ENSTNIG00000008372) UQCRFS1 (ENSTNIG00000008373) rxylt1 (ENSTNIG00000008374) SRGAP1 (ENSTNIG00000008375) ENSTNIG00000008376 parp12a (ENSTNIG00000008377) Fugu MODERN SPECIES 21 tmem17 (ENSTRUG00000023645) agbl2 (ENSTRUG00000004266) fnbp4 (ENSTRUG00000003562) bscl2 (ENSTRUG00000003547) ENSTRUG00000026408 cnot2 (ENSTRUG00000002924) ENSTRUG00000001638 ENSTRUG00000001488 etfbkmt (ENSTRUG00000001435) fnbp4 (ENSTRUG00000027143) bscl2 (ENSTRUG00000032633) ENSTRUG00000029477 si:ch73-62b13.1 (ENSTRUG00000003331) mterf2 (ENSTRUG00000003435) ##20 zgc:153031 (ENSTRUG00000003460) ABTB3 (ENSTRUG00000003690) ##22 mlc1 (ENSTRUG00000004497) panx2 (ENSTRUG00000004850) trabd (ENSTRUG00000029898) selenoo1 (ENSTRUG00000004974) mapk12a (ENSTRUG00000005120) mtss1la (ENSTRUG00000005593) ENSTRUG00000005873 ENSTRUG00000031085 ENSTRUG00000006028 ENSTRUG00000030712 uri1 (ENSTRUG00000006106) zgc:112052 (ENSTRUG00000027135) UQCRFS1 (ENSTRUG00000006531) rxylt1 (ENSTRUG00000006536) SRGAP1 (ENSTRUG00000006667) Eupecaria_A ANCESTRAL SPECIES 7 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Eupecaria_B ANCESTRAL SPECIES 7 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Eupecaria_C ANCESTRAL SPECIES 6 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Eupercaria_incertae_sedis ANCESTRAL SPECIES 4 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Large yellow croaker MODERN SPECIES 492 ENSLCRG00005015724 ENSLCRG00005015723 tmem17 (ENSLCRG00005015721) agbl2 (ENSLCRG00005015720) fnbp4 (ENSLCRG00005015718) ENSLCRG00005015716 lrrc10 (ENSLCRG00005015715) cnot2 (ENSLCRG00005015686) WASHC4 (ENSLCRG00005015674) ENSLCRG00005015661 etfbkmt (ENSLCRG00005015659) si:ch73-62b13.1 (ENSLCRG00005015658) mterf2 (ENSLCRG00005015657) ##20 zgc:153031 (ENSLCRG00005015656) cry1b (ENSLCRG00005015281) ##21 ABTB3 (ENSLCRG00005015109) ##22 mlc1 (ENSLCRG00005015105) panx2 (ENSLCRG00005015102) trabd (ENSLCRG00005015099) selenoo1 (ENSLCRG00005015081) mapk12a (ENSLCRG00005014991) mtss1la (ENSLCRG00005014946) ENSLCRG00005014944 ENSLCRG00005014942 ENSLCRG00005014941 uri1 (ENSLCRG00005014938) zgc:112052 (ENSLCRG00005014936) UQCRFS1 (ENSLCRG00005014935) rxylt1 (ENSLCRG00005014932) SRGAP1 (ENSLCRG00005013381) ENSLCRG00005013346 European seabass MODERN SPECIES 19 ENSDLAG00005001385 tmem17 (ENSDLAG00005001361) agbl2 (ENSDLAG00005027255) fnbp4 (ENSDLAG00005001305) ENSDLAG00005001285 lrrc10 (ENSDLAG00005033427) cnot2 (ENSDLAG00005022342) ENSDLAG00005022303 ENSDLAG00005022248 etfbkmt (ENSDLAG00005027482) si:ch73-62b13.1 (ENSDLAG00005022239) mterf2 (ENSDLAG00005033985) ##20 zgc:153031 (ENSDLAG00005022234) zgc:153031 (ENSDLAG00005030360) cry1b (ENSDLAG00005022057) ##21 ENSDLAG00005021765 ##22 mlc1 (ENSDLAG00005026632) panx2 (ENSDLAG00005021717) selenoo1 (ENSDLAG00005021639) mapk12a (ENSDLAG00005021528) mtss1la (ENSDLAG00005021408) ENSDLAG00005021314 ENSDLAG00005021310 ENSDLAG00005031072 ENSDLAG00005021293 uri1 (ENSDLAG00005021285) zgc:112052 (ENSDLAG00005026692) ENSDLAG00005021271 rxylt1 (ENSDLAG00005021263) ENSDLAG00005021017 ENSDLAG00005020989 Gilthead seabream MODERN SPECIES 22 ENSSAUG00010003200 ENSSAUG00010003182 tmem17 (ENSSAUG00010003178) agbl2 (ENSSAUG00010003164) fnbp4 (ENSSAUG00010003147) bscl2 (ENSSAUG00010003140) lrrc10 (ENSSAUG00010003138) cnot2 (ENSSAUG00010002830) WASHC4 (ENSSAUG00010002683) ENSSAUG00010002536 etfbkmt (ENSSAUG00010002516) si:ch73-62b13.1 (ENSSAUG00010002509) mterf2 (ENSSAUG00010002505) ##20 zgc:153031 (ENSSAUG00010002503) cry1b (ENSSAUG00010001264) ##21 ABTB3 (ENSSAUG00010000873) ##22 mlc1 (ENSSAUG00010000839) panx2 (ENSSAUG00010000830) trabd (ENSSAUG00010000816) selenoo1 (ENSSAUG00010000804) mapk12a (ENSSAUG00010000736) mtss1la (ENSSAUG00010000505) ENSSAUG00010000446 ENSSAUG00010000429 ENSSAUG00010000415 uri1 (ENSSAUG00010000405) ENSSAUG00010000395 ENSSAUG00010000389 ENSSAUG00010012046 ENSSAUG00010012044 ENSSAUG00010012043 Perciformes ANCESTRAL SPECIES 7 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Cottioidei ANCESTRAL SPECIES 6 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154521.B Lumpfish MODERN SPECIES 21 SLC15A5 (ENSCLMG00005002854) ENSCLMG00005002903 tmem17 (ENSCLMG00005002919) agbl2 (ENSCLMG00005002949) fnbp4 (ENSCLMG00005002988) bscl2 (ENSCLMG00005003004) ENSCLMG00005003009 cnot2 (ENSCLMG00005003053) WASHC4 (ENSCLMG00005003734) ENSCLMG00005003747 etfbkmt (ENSCLMG00005003755) si:ch73-62b13.1 (ENSCLMG00005003756) mterf2 (ENSCLMG00005003757) ##20 zgc:153031 (ENSCLMG00005003758) cry1b (ENSCLMG00005003776) ##21 ABTB3 (ENSCLMG00005005431) ##22 mlc1 (ENSCLMG00005005436) panx2 (ENSCLMG00005005441) trabd (ENSCLMG00005005443) selenoo1 (ENSCLMG00005005445) mapk12a (ENSCLMG00005005454) mtss1la (ENSCLMG00005005570) ENSCLMG00005005732 ENSCLMG00005005737 ENSCLMG00005005739 uri1 (ENSCLMG00005005742) zgc:112052 (ENSCLMG00005005746) UQCRFS1 (ENSCLMG00005005749) rxylt1 (ENSCLMG00005005758) SRGAP1 (ENSCLMG00005005837) ENSCLMG00005013031 Stickleback MODERN SPECIES 14 TSPAN9 (ENSGACG00000013579) ##34 tspan33b (ENSGACG00000013564) ttc38 (ENSGACG00000013552) mical3a (ENSGACG00000013547) ENSGACG00000013544 hipk2 (ENSGACG00000013538) fnbp4 (ENSGACG00000013528) ENSGACG00000013525 cnot2 (ENSGACG00000013517) WASHC4 (ENSGACG00000013499) ENSGACG00000013493 etfbkmt (ENSGACG00000013489) si:ch73-62b13.1 (ENSGACG00000013487) zgc:153031 (ENSGACG00000013483) cry1b (ENSGACG00000013480) ##21 ABTB3 (ENSGACG00000013473) ##22 mlc1 (ENSGACG00000013465) panx2 (ENSGACG00000013460) trabd (ENSGACG00000013447) selenoo1 (ENSGACG00000013433) mapk12a (ENSGACG00000013390) mtss1la (ENSGACG00000013388) ENSGACG00000013379 ENSGACG00000013377 uri1 (ENSGACG00000013365) zgc:112052 (ENSGACG00000013358) UQCRFS1 (ENSGACG00000013352) rxylt1 (ENSGACG00000013345) SRGAP1 (ENSGACG00000013333) ENSGACG00000013331 parp12a (ENSGACG00000013321) Perciformes_a ANCESTRAL SPECIES 7 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000169873 ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Channel bull blenny MODERN SPECIES 20 ENSCGOG00000004580 tmem17 (ENSCGOG00000004575) agbl2 (ENSCGOG00000004573) fnbp4 (ENSCGOG00000004565) ENSCGOG00000004559 ENSCGOG00000004558 cnot2 (ENSCGOG00000003613) WASHC4 (ENSCGOG00000003214) ENSCGOG00000003111 etfbkmt (ENSCGOG00000003102) si:ch73-62b13.1 (ENSCGOG00000003101) ENSCGOG00000003099 mterf2 (ENSCGOG00000003097) ##20 zgc:153031 (ENSCGOG00000003094) cry1b (ENSCGOG00000002706) ##21 ABTB3 (ENSCGOG00000020187) ##22 mlc1 (ENSCGOG00000020104) panx2 (ENSCGOG00000020100) trabd (ENSCGOG00000020096) selenoo1 (ENSCGOG00000020063) mapk12a (ENSCGOG00000019661) mtss1la (ENSCGOG00000019097) ENSCGOG00000019072 ENSCGOG00000019070 ENSCGOG00000019068 ENSCGOG00000019066 uri1 (ENSCGOG00000019063) zgc:112052 (ENSCGOG00000019061) UQCRFS1 (ENSCGOG00000019060) rxylt1 (ENSCGOG00000019059) SRGAP1 (ENSCGOG00000016750) Pike perch MODERN SPECIES 6 ENSSLUG00000001610 ENSSLUG00000001621 mthfs (ENSSLUG00000001634) tmem17 (ENSSLUG00000001644) agbl2 (ENSSLUG00000001678) fnbp4 (ENSSLUG00000001717) ENSSLUG00000001748 cnot2 (ENSSLUG00000001886) WASHC4 (ENSSLUG00000002299) ENSSLUG00000002696 etfbkmt (ENSSLUG00000002839) si:ch73-62b13.1 (ENSSLUG00000002842) mterf2 (ENSSLUG00000002844) ##20 zgc:153031 (ENSSLUG00000002845) cry1b (ENSSLUG00000002894) ##21 ABTB3 (ENSSLUG00000003575) ##22 mlc1 (ENSSLUG00000004015) panx2 (ENSSLUG00000004020) trabd (ENSSLUG00000004032) selenoo1 (ENSSLUG00000004044) mapk12a (ENSSLUG00000004072) mtss1la (ENSSLUG00000004217) ENSSLUG00000004347 ENSSLUG00000004354 uri1 (ENSSLUG00000004364) zgc:112052 (ENSSLUG00000004395) ENSSLUG00000004404 rxylt1 (ENSSLUG00000004411) SRGAP1 (ENSSLUG00000004684) ccdc113 (ENSSLUG00000011252) parp12a (ENSSLUG00000011254) Ballan wrasse DUPLICATION Ballan wrasse MODERN SPECIES 2899 ABTB3 (ENSLBEG00000021092) ##22 Ballan wrasse MODERN SPECIES 6 ENSLBEG00000000874 cib1 (ENSLBEG00000000888) ENSLBEG00000000647 gdpgp1 (ENSLBEG00000000610) RHCG (ENSLBEG00000000557) TVP23A (ENSLBEG00000000349) POLG (ENSLBEG00000000259) ENSLBEG00000000198 FBXO31 (ENSLBEG00000000159) ENSLBEG00000000145 ENSLBEG00000000107 si:ch73-62b13.1 (ENSLBEG00000000098) mterf2 (ENSLBEG00000000090) ##20 zgc:153031 (ENSLBEG00000000085) cry1b (ENSLBEG00000000060) ##21 ABTB3 (ENSLBEG00000000040) ##22 mlc1 (ENSLBEG00000000037) panx2 (ENSLBEG00000000030) Ovalentaria ANCESTRAL SPECIES 7 ENSGT00390000003450 ENSGT00940000169873 ENSGT00940000155040.b ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 Ovalentaria_B ANCESTRAL SPECIES 3 ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000155040.b ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 Pomacentridae ANCESTRAL SPECIES 1 ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000155040.b ENSGT00390000011639.p ENSGT00940000164030 ENSGT00970000194077 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Pomacentridae_A ANCESTRAL SPECIES 27 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000155040.b ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d Amphiprion ANCESTRAL SPECIES 21 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d Orange clownfish MODERN SPECIES 18 ENSAPEG00000011213 ENSAPEG00000011223 tmem17 (ENSAPEG00000011227) agbl2 (ENSAPEG00000011236) fnbp4 (ENSAPEG00000011283) bscl2 (ENSAPEG00000011293) lrrc10 (ENSAPEG00000011311) cnot2 (ENSAPEG00000011343) WASHC4 (ENSAPEG00000011406) ENSAPEG00000011538 etfbkmt (ENSAPEG00000011574) si:ch73-62b13.1 (ENSAPEG00000011582) mterf2 (ENSAPEG00000011588) ##20 zgc:153031 (ENSAPEG00000011610) cry1b (ENSAPEG00000011632) ##21 ABTB3 (ENSAPEG00000011664) ##22 mlc1 (ENSAPEG00000011738) panx2 (ENSAPEG00000011893) trabd (ENSAPEG00000011944) selenoo1 (ENSAPEG00000012010) mapk12a (ENSAPEG00000012033) mtss1la (ENSAPEG00000012097) ENSAPEG00000012193 ENSAPEG00000012210 ENSAPEG00000012220 ENSAPEG00000012233 uri1 (ENSAPEG00000012262) zgc:112052 (ENSAPEG00000012273) si:dkey-30c15.2 (ENSAPEG00000012284) ENSAPEG00000012307 terb1 (ENSAPEG00000012369) Clown anemonefish MODERN SPECIES 1122 ABTB3 (ENSAOCG00000001603) ##22 mlc1 (ENSAOCG00000022047) panx2 (ENSAOCG00000022057) trabd (ENSAOCG00000022082) Spiny chromis MODERN SPECIES 65 KDM2A (ENSAPOG00000007163) ANKRD13D (ENSAPOG00000006944) ENSAPOG00000006761 ENSAPOG00000006747 ENSAPOG00000006729 ENSAPOG00000006717 ENSAPOG00000006698 CHRNA6 (ENSAPOG00000006644) chrnb3b (ENSAPOG00000006628) ENSAPOG00000006590 etfbkmt (ENSAPOG00000006572) si:ch73-62b13.1 (ENSAPOG00000006564) mterf2 (ENSAPOG00000006555) ##20 zgc:153031 (ENSAPOG00000006545) cry1b (ENSAPOG00000006529) ##21 ABTB3 (ENSAPOG00000006508) ##22 mlc1 (ENSAPOG00000006425) panx2 (ENSAPOG00000006400) selenoo1 (ENSAPOG00000006323) mapk12a (ENSAPOG00000006302) mtss1la (ENSAPOG00000006241) ENSAPOG00000006142 ENSAPOG00000006112 ENSAPOG00000006104 uri1 (ENSAPOG00000006084) zgc:112052 (ENSAPOG00000000159) Bicolor damselfish MODERN SPECIES 941 ENSSPAG00000011076 cry1b (ENSSPAG00000011036) ##21 ABTB3 (ENSSPAG00000011004) ##22 mlc1 (ENSSPAG00000010917) panx2 (ENSSPAG00000010874) trabd (ENSSPAG00000010809) selenoo1 (ENSSPAG00000010677) mapk12a (ENSSPAG00000010605) mtss1la (ENSSPAG00000010570) ENSSPAG00000010545 ENSSPAG00000010508 ENSSPAG00000010498 Cichlidae ANCESTRAL SPECIES 5 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00940000178549 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Pseudocrenilabrinae ANCESTRAL SPECIES ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000169873 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Pseudocrenilabrinae_A ANCESTRAL SPECIES ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000169873 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Haplochromini ANCESTRAL SPECIES ENSGT00730000111271 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00510000049866.g.b.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Haplochromini_A ANCESTRAL SPECIES 1 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.f ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00510000049866.g.b.b ENSGT00390000003450 ENSGT00940000169873.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Haplochromini_B ANCESTRAL SPECIES 40 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.a.a.a.b.b.a.b.f ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00510000049866.g.b.b ENSGT00390000003450 ENSGT00940000169873.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Eastern happy MODERN SPECIES 19 ENSACLG00000003907 agbl2 (ENSACLG00000003920) tmem17 (ENSACLG00000003969) fnbp4 (ENSACLG00000003984) ENSACLG00000004003 ENSACLG00000004007 ENSACLG00000004012 cnot2 (ENSACLG00000004020) WASHC4 (ENSACLG00000004055) SLC41A2 (ENSACLG00000004160) etfbkmt (ENSACLG00000004215) si:ch73-62b13.1 (ENSACLG00000004373) mterf2 (ENSACLG00000004378) ##20 zgc:153031 (ENSACLG00000004382) cry1b (ENSACLG00000004387) ##21 ABTB3 (ENSACLG00000004410) ##22 mlc1 (ENSACLG00000004485) panx2 (ENSACLG00000004510) trabd (ENSACLG00000004524) selenoo1 (ENSACLG00000004545) mapk12a (ENSACLG00000004563) mtss1la (ENSACLG00000004911) ENSACLG00000004953 ENSACLG00000004984 ENSACLG00000004992 ENSACLG00000004994 uri1 (ENSACLG00000005007) zgc:112052 (ENSACLG00000005022) UQCRFS1 (ENSACLG00000005027) rxylt1 (ENSACLG00000005033) SRGAP1 (ENSACLG00000005406) Zebra mbuna MODERN SPECIES 1110 ENSMZEG00005017325 tmem17 (ENSMZEG00005017323) agbl2 (ENSMZEG00005017319) ENSMZEG00005017311 fnbp4 (ENSMZEG00005017308) ENSMZEG00005017305 ENSMZEG00005017302 cnot2 (ENSMZEG00005017275) WASHC4 (ENSMZEG00005017251) SLC41A2 (ENSMZEG00005017242) etfbkmt (ENSMZEG00005017239) si:ch73-62b13.1 (ENSMZEG00005017237) mterf2 (ENSMZEG00005017233) ##20 zgc:153031 (ENSMZEG00005017228) cry1b (ENSMZEG00005017214) ##21 ABTB3 (ENSMZEG00005017206) ##22 mlc1 (ENSMZEG00005017199) panx2 (ENSMZEG00005017188) trabd (ENSMZEG00005017184) selenoo1 (ENSMZEG00005017179) mapk12a (ENSMZEG00005017170) mtss1la (ENSMZEG00005017147) ENSMZEG00005017128 ENSMZEG00005017123 ENSMZEG00005017120 uri1 (ENSMZEG00005017110) zgc:112052 (ENSMZEG00005017108) UQCRFS1 (ENSMZEG00005017102) rxylt1 (ENSMZEG00005017092) SRGAP1 (ENSMZEG00005017061) parp12a (ENSMZEG00005017042) P. nyererei MODERN SPECIES 355 ENSPNYG00000021639 tmem17 (ENSPNYG00000021631) agbl2 (ENSPNYG00000021615) ENSPNYG00000021603 fnbp4 (ENSPNYG00000021581) bscl2 (ENSPNYG00000021570) ENSPNYG00000021563 cnot2 (ENSPNYG00000021545) WASHC4 (ENSPNYG00000021505) ENSPNYG00000021488 etfbkmt (ENSPNYG00000021482) si:ch73-62b13.1 (ENSPNYG00000021476) mterf2 (ENSPNYG00000021469) ##20 zgc:153031 (ENSPNYG00000021451) cry1b (ENSPNYG00000021423) ##21 ABTB3 (ENSPNYG00000021392) ##22 mlc1 (ENSPNYG00000021335) panx2 (ENSPNYG00000021291) trabd (ENSPNYG00000021275) selenoo1 (ENSPNYG00000021264) mapk12a (ENSPNYG00000021237) mtss1la (ENSPNYG00000021196) ENSPNYG00000021182 ENSPNYG00000021177 ENSPNYG00000021164 uri1 (ENSPNYG00000021154) zgc:112052 (ENSPNYG00000021138) UQCRFS1 (ENSPNYG00000021127) rxylt1 (ENSPNYG00000021114) SRGAP1 (ENSPNYG00000021071) ENSPNYG00000021048 Burton s mouthbrooder MODERN SPECIES 386 etfbkmt (ENSHBUG00000018381) si:ch73-62b13.1 (ENSHBUG00000018376) mterf2 (ENSHBUG00000018363) ##20 zgc:153031 (ENSHBUG00000018355) cry1b (ENSHBUG00000018344) ##21 ABTB3 (ENSHBUG00000018331) ##22 mlc1 (ENSHBUG00000018306) panx2 (ENSHBUG00000018258) trabd (ENSHBUG00000018244) selenoo1 (ENSHBUG00000018236) mapk12a (ENSHBUG00000018224) mtss1la (ENSHBUG00000018162) ENSHBUG00000018051 ENSHBUG00000000533 ENSHBUG00000018036 ENSHBUG00000018029 uri1 (ENSHBUG00000018001) zgc:112052 (ENSHBUG00000017994) UQCRFS1 (ENSHBUG00000017986) rxylt1 (ENSHBUG00000017965) SRGAP1 (ENSHBUG00000017905) Lyretail cichlid MODERN SPECIES 330 ush1c (ENSNBRG00000014390) ccdc77 (ENSNBRG00000014460) hdhd5 (ENSNBRG00000014490) RAB19 (ENSNBRG00000014503) SLC15A5 (ENSNBRG00000014519) ENSNBRG00000014548 tmem17 (ENSNBRG00000014558) WASHC4 (ENSNBRG00000014583) ENSNBRG00000014621 ETFBKMT (ENSNBRG00000014653) si:ch73-62b13.1 (ENSNBRG00000014665) ENSNBRG00000014679 mterf2 (ENSNBRG00000014689) ##20 cry1b (ENSNBRG00000014696) ##21 ABTB3 (ENSNBRG00000014720) ##22 mlc1 (ENSNBRG00000014754) panx2 (ENSNBRG00000014822) trabd (ENSNBRG00000014878) selenoo1 (ENSNBRG00000014901) mapk12a (ENSNBRG00000014913) ENSNBRG00000014942 mtss1la (ENSNBRG00000014960) ENSNBRG00000015040 ENSNBRG00000015118 ENSNBRG00000015131 uri1 (ENSNBRG00000015170) zgc:112052 (ENSNBRG00000015214) UQCRFS1 (ENSNBRG00000015230) rxylt1 (ENSNBRG00000015243) ENSNBRG00000015255 Nile tilapia MODERN SPECIES 19 fnbp4 (ENSONIG00000010472) bscl2 (ENSONIG00000010471) ENSONIG00000021287 cnot2 (ENSONIG00000010467) WASHC4 (ENSONIG00000010465) SLC41A2 (ENSONIG00000010462) ENSONIG00000040442 ENSONIG00000029851 ENSONIG00000041230 etfbkmt (ENSONIG00000010461) ENSONIG00000036080 si:ch73-62b13.1 (ENSONIG00000010457) mterf2 (ENSONIG00000021286) ##20 zgc:153031 (ENSONIG00000027181) cry1b (ENSONIG00000010451) ##21 ABTB3 (ENSONIG00000010442) ##22 mlc1 (ENSONIG00000010440) panx2 (ENSONIG00000010439) trabd (ENSONIG00000010438) selenoo1 (ENSONIG00000010436) mapk12a (ENSONIG00000033062) mtss1la (ENSONIG00000010426) ENSONIG00000010425 ENSONIG00000028458 ENSONIG00000038382 uri1 (ENSONIG00000010420) zgc:112052 (ENSONIG00000040508) UQCRFS1 (ENSONIG00000034357) ENSONIG00000029822 rxylt1 (ENSONIG00000010415) SRGAP1 (ENSONIG00000010412) Midas cichlid MODERN SPECIES 1078 ENSACIG00000008573 etfbkmt (ENSACIG00000008581) si:ch73-62b13.1 (ENSACIG00000008590) ENSACIG00000008601 ENSACIG00000008609 mterf2 (ENSACIG00000008621) ##20 zgc:153031 (ENSACIG00000008624) cry1b (ENSACIG00000008657) ##21 ABTB3 (ENSACIG00000008802) ##22 mlc1 (ENSACIG00000008881) panx2 (ENSACIG00000008966) trabd (ENSACIG00000009012) selenoo1 (ENSACIG00000009081) mapk12a (ENSACIG00000009206) mtss1la (ENSACIG00000009243) ENSACIG00000009275 ENSACIG00000009377 ENSACIG00000009404 uri1 (ENSACIG00000009427) zgc:112052 (ENSACIG00000009489) UQCRFS1 (ENSACIG00000009501) rxylt1 (ENSACIG00000009511) SRGAP1 (ENSACIG00000009551) ENSACIG00000009611 Atherinomorphae ANCESTRAL SPECIES 5 ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000169873 ENSGT00940000155040.b ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 Oryzias ANCESTRAL SPECIES 27 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Oryzias_b ANCESTRAL SPECIES ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000164030 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000170767 Indian medaka MODERN SPECIES 15 tmem17 (ENSOMEG00000023302) ENSOMEG00000023291 ENSOMEG00000023269 fnbp4 (ENSOMEG00000023262) bscl2 (ENSOMEG00000023243) ENSOMEG00000023238 cnot2 (ENSOMEG00000023230) WASHC4 (ENSOMEG00000023213) ENSOMEG00000023173 ENSOMEG00000023171 etfbkmt (ENSOMEG00000023159) si:ch73-62b13.1 (ENSOMEG00000023153) mterf2 (ENSOMEG00000023148) ##20 zgc:153031 (ENSOMEG00000023137) cry1b (ENSOMEG00000023131) ##21 ABTB3 (ENSOMEG00000023106) ##22 mlc1 (ENSOMEG00000023064) panx2 (ENSOMEG00000023037) trabd (ENSOMEG00000023028) selenoo1 (ENSOMEG00000023016) mapk12a (ENSOMEG00000023005) mtss1la (ENSOMEG00000022970) ENSOMEG00000022921 ENSOMEG00000022907 ENSOMEG00000022882 ENSOMEG00000022873 uri1 (ENSOMEG00000022862) rxylt1 (ENSOMEG00000022836) UQCRFS1 (ENSOMEG00000022814) SRGAP1 (ENSOMEG00000022797) ENSOMEG00000022746 Javanese ricefish MODERN SPECIES 20 RAB19 (ENSOJAG00000001010) ccdc34 (ENSOJAG00000001020) SLC15A5 (ENSOJAG00000001028) tmem17 (ENSOJAG00000001036) agbl2 (ENSOJAG00000001047) fnbp4 (ENSOJAG00000001059) bscl2 (ENSOJAG00000001067) ENSOJAG00000001073 cnot2 (ENSOJAG00000001088) ENSOJAG00000001143 etfbkmt (ENSOJAG00000001197) si:ch73-62b13.1 (ENSOJAG00000001200) mterf2 (ENSOJAG00000001208) ##20 zgc:153031 (ENSOJAG00000001210) cry1b (ENSOJAG00000001274) ##21 ABTB3 (ENSOJAG00000001505) ##22 mlc1 (ENSOJAG00000001891) panx2 (ENSOJAG00000001950) trabd (ENSOJAG00000001969) mtss1la (ENSOJAG00000002645) ENSOJAG00000002848 ENSOJAG00000002928 ENSOJAG00000002940 uri1 (ENSOJAG00000002949) zgc:112052 (ENSOJAG00000002957) UQCRFS1 (ENSOJAG00000002965) rxylt1 (ENSOJAG00000002970) SRGAP1 (ENSOJAG00000003281) ENSOJAG00000006110 parp12a (ENSOJAG00000006130) tbxas1 (ENSOJAG00000006173) Oryzias_a ANCESTRAL SPECIES 1 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160916 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000177757 ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Japanese Medaka HdrR MODERN SPECIES 20 ENSORLG00000016495 fnbp4 (ENSORLG00000016483) bscl2 (ENSORLG00000016461) lrrc10 (ENSORLG00000016459) ENSORLG00000029076 cnot2 (ENSORLG00000016454) WASHC4 (ENSORLG00000016434) ENSORLG00000024150 ENSORLG00000016413 etfbkmt (ENSORLG00000016400) ENSORLG00000026318 si:ch73-62b13.1 (ENSORLG00000029018) mterf2 (ENSORLG00000016392) ##20 zgc:153031 (ENSORLG00000016391) cry1b (ENSORLG00000016382) ##21 ABTB3 (ENSORLG00000016367) ##22 mlc1 (ENSORLG00000016340) panx2 (ENSORLG00000016329) trabd (ENSORLG00000027004) selenoo1 (ENSORLG00000016310) mapk12a (ENSORLG00000016296) mtss1la (ENSORLG00000016237) ENSORLG00000016202 ENSORLG00000016193 ENSORLG00000030615 ENSORLG00000026079 uri1 (ENSORLG00000029320) zgc:112052 (ENSORLG00000016190) ENSORLG00000016185 rxylt1 (ENSORLG00000016182) SRGAP1 (ENSORLG00000016175) Chinese medaka MODERN SPECIES 2376 ENSOSIG00000013448 ##22 Cyprinodontiformes ANCESTRAL SPECIES 6 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000169873 ENSGT00940000155040.b ENSGT00390000011639.p ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Aplocheiloidei ANCESTRAL SPECIES 1 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000155040.b ENSGT00390000011639.p ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000170767 Mangrove rivulus MODERN SPECIES 45 ENSKMAG00000000758 tmem17 (ENSKMAG00000000742) agbl2 (ENSKMAG00000000693) fnbp4 (ENSKMAG00000000682) lrrc10 (ENSKMAG00000000669) bscl2 (ENSKMAG00000000657) cnot2 (ENSKMAG00000000577) WASHC4 (ENSKMAG00000000399) ENSKMAG00000000222 etfbkmt (ENSKMAG00000000165) si:ch73-62b13.1 (ENSKMAG00000022124) mterf2 (ENSKMAG00000022121) ##20 zgc:153031 (ENSKMAG00000022120) cry1 (ENSKMAG00000022117) ##21 ENSKMAG00000022114 ABTB3 (ENSKMAG00000022111) ##22 mlc1 (ENSKMAG00000022107) panx2 (ENSKMAG00000022105) trabd (ENSKMAG00000022102) selenoo1 (ENSKMAG00000022100) mapk12a (ENSKMAG00000022096) mtss1la (ENSKMAG00000022088) ENSKMAG00000022083 ENSKMAG00000022079 ENSKMAG00000022078 uri1 (ENSKMAG00000022075) ENSKMAG00000022072 zgc:112052 (ENSKMAG00000022067) rxylt1 (ENSKMAG00000022064) SRGAP1 (ENSKMAG00000022058) ENSKMAG00000022051 Turquoise killifish MODERN SPECIES 1622 ENSNFUG00015024355 TMEM17 (ENSNFUG00015024356) agbl2 (ENSNFUG00015024365) FNBP4 (ENSNFUG00015024371) BSCL2 (ENSNFUG00015024383) ENSNFUG00015024384 cnot2 (ENSNFUG00015024391) SLC41A2 (ENSNFUG00015024468) ENSNFUG00015024526 METTL20 (ENSNFUG00015024564) si:ch73-62b13.1 (ENSNFUG00015024567) mterf2 (ENSNFUG00015024572) ##20 zgc:153031 (ENSNFUG00015024575) cry1b (ENSNFUG00015024582) ##21 ENSNFUG00015024603 ABTB3 (ENSNFUG00015024623) ##22 ENSNFUG00015024707 MLC1 (ENSNFUG00015024712) panx2 (ENSNFUG00015024715) PANX2 (ENSNFUG00015024719) SELO (ENSNFUG00015024726) mapk12a (ENSNFUG00015024752) mtss1la (ENSNFUG00015024845) ENSNFUG00015024881 ENSNFUG00015024887 ENSNFUG00015004754 ENSNFUG00015004763 URI1 (ENSNFUG00015004771) zgc:112052 (ENSNFUG00015004778) UQCRFS1 (ENSNFUG00015004785) TMEM5 (ENSNFUG00015004810) Cyprinodontoidei ANCESTRAL SPECIES 7 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Poeciliinae ANCESTRAL SPECIES 3 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00940000169873 ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Poecilia ANCESTRAL SPECIES 5 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a NAME_6 ANCESTRAL SPECIES 70 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.b ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00770000121709.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a Sailfin molly MODERN SPECIES 1348 si:ch73-62b13.1 (ENSPLAG00000020738) mterf2 (ENSPLAG00000020748) ##20 zgc:153031 (ENSPLAG00000020755) cry1b (ENSPLAG00000020765) ##21 ABTB3 (ENSPLAG00000000451) ##22 mlc1 (ENSPLAG00000020862) Amazon molly MODERN SPECIES 375 ABTB3 (ENSPFOG00000005343) ##22 mlc1 (ENSPFOG00000005151) panx2 (ENSPFOG00000005077) trabd (ENSPFOG00000004950) selenoo1 (ENSPFOG00000004837) mapk12a (ENSPFOG00000004613) mtss1la (ENSPFOG00000004505) ENSPFOG00000021754 ENSPFOG00000003867 ENSPFOG00000003829 ENSPFOG00000023890 uri1 (ENSPFOG00000003724) zgc:112052 (ENSPFOG00000003707) UQCRFS1 (ENSPFOG00000003681) rxylt1 (ENSPFOG00000003639) SRGAP1 (ENSPFOG00000002485) Guppy MODERN SPECIES 458 ENSPREG00000020664 ENSPREG00000020692 tmem17 (ENSPREG00000020736) agbl2 (ENSPREG00000020709) fnbp4 (ENSPREG00000020749) bscl2 (ENSPREG00000020766) ENSPREG00000020784 cnot2 (ENSPREG00000020804) WASHC4 (ENSPREG00000020862) SLC41A2 (ENSPREG00000020938) etfbkmt (ENSPREG00000020975) si:ch73-62b13.1 (ENSPREG00000020983) mterf2 (ENSPREG00000020992) ##20 zgc:153031 (ENSPREG00000021000) cry1b (ENSPREG00000021016) ##21 ENSPREG00000021050 ##22 mlc1 (ENSPREG00000021074) panx2 (ENSPREG00000021098) trabd (ENSPREG00000021111) selenoo1 (ENSPREG00000021131) mapk12a (ENSPREG00000021153) mtss1la (ENSPREG00000021182) ENSPREG00000021225 ENSPREG00000021274 ENSPREG00000021278 uri1 (ENSPREG00000021288) zgc:112052 (ENSPREG00000021304) UQCRFS1 (ENSPREG00000000543) rxylt1 (ENSPREG00000000546) SRGAP1 (ENSPREG00000000552) ENSPREG00000000655 Platyfish MODERN SPECIES 11 ENSXMAG00000023724 tmem17 (ENSXMAG00000019268) agbl2 (ENSXMAG00000019269) fnbp4 (ENSXMAG00000019272) ENSXMAG00000023055 ENSXMAG00000019278 cnot2 (ENSXMAG00000019279) WASHC4 (ENSXMAG00000019275) SLC41A2 (ENSXMAG00000019285) etfbkmt (ENSXMAG00000013003) si:ch73-62b13.1 (ENSXMAG00000019286) ENSXMAG00000021834 mterf2 (ENSXMAG00000019427) ##20 zgc:153031 (ENSXMAG00000019287) cry1b (ENSXMAG00000001744) ##21 ABTB3 (ENSXMAG00000019218) ##22 mlc1 (ENSXMAG00000019211) panx2 (ENSXMAG00000019204) trabd (ENSXMAG00000022221) selenoo1 (ENSXMAG00000019190) mapk12a (ENSXMAG00000019178) mtss1la (ENSXMAG00000019158) ENSXMAG00000019157 ENSXMAG00000019156 ENSXMAG00000021732 ENSXMAG00000019154 uri1 (ENSXMAG00000019147) zgc:112052 (ENSXMAG00000023744) UQCRFS1 (ENSXMAG00000026719) rxylt1 (ENSXMAG00000019131) SRGAP1 (ENSXMAG00000019097) NAME_4 ANCESTRAL SPECIES 51 ENSGT00940000158916 ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.b.c.a ENSGT00940000153899.b.b ENSGT00940000160201 ENSGT00390000003450 ENSGT00390000011639.p ENSGT00940000155040.b ENSGT00390000001285.j ENSGT00390000002524 ENSGT00950000183042.a.b.b ENSGT00940000163501 ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000001014.`b.b ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000170767 Sheepshead minnow MODERN SPECIES 166 ETFBKMT (ENSCVAG00000015661) si:ch73-62b13.1 (ENSCVAG00000015671) mterf2 (ENSCVAG00000015675) ##20 zgc:153031 (ENSCVAG00000015697) cry1b (ENSCVAG00000015731) ##21 ABTB3 (ENSCVAG00000015829) ##22 mlc1 (ENSCVAG00000015839) panx2 (ENSCVAG00000015867) trabd (ENSCVAG00000015905) selenoo1 (ENSCVAG00000015917) mapk12a (ENSCVAG00000015947) mtss1la (ENSCVAG00000016015) ENSCVAG00000016114 ENSCVAG00000000412 ENSCVAG00000016129 uri1 (ENSCVAG00000016155) zgc:112052 (ENSCVAG00000016175) UQCRFS1 (ENSCVAG00000016182) rxylt1 (ENSCVAG00000016188) SRGAP1 (ENSCVAG00000016374) parp12a (ENSCVAG00000016385) Mummichog MODERN SPECIES 266 ENSFHEG00000012484 ##22 mlc1 (ENSFHEG00000012445) panx2 (ENSFHEG00000000751) trabd (ENSFHEG00000012231) selenoo1 (ENSFHEG00000012226) mapk12a (ENSFHEG00000000892) mtss1la (ENSFHEG00000012159) ENSFHEG00000012055 ENSFHEG00000012040 ENSFHEG00000012037 uri1 (ENSFHEG00000012026) UQCRFS1 (ENSFHEG00000012014) zgc:112052 (ENSFHEG00000012009) rxylt1 (ENSFHEG00000011998) SRGAP1 (ENSFHEG00000011991) ENSFHEG00000011866 Pinecone sodierfish MODERN SPECIES 20 ENSMMDG00005007210 tmem17 (ENSMMDG00005007212) agbl2 (ENSMMDG00005007214) fnbp4 (ENSMMDG00005007242) bscl2 (ENSMMDG00005007246) ENSMMDG00005007247 cnot2 (ENSMMDG00005007260) WASHC4 (ENSMMDG00005008282) ENSMMDG00005008341 amn1 (ENSMMDG00005008441) etfbkmt (ENSMMDG00005008443) si:ch73-62b13.1 (ENSMMDG00005008445) mterf2 (ENSMMDG00005008447) ##20 zgc:153031 (ENSMMDG00005008450) cry1b (ENSMMDG00005008473) ##21 ABTB3 (ENSMMDG00005008573) ##22 mlc1 (ENSMMDG00005008576) panx2 (ENSMMDG00005008578) trabd (ENSMMDG00005008580) selenoo1 (ENSMMDG00005008583) mapk12a (ENSMMDG00005008585) mtss1la (ENSMMDG00005008660) ENSMMDG00005008724 ENSMMDG00005008730 ENSMMDG00005008733 uri1 (ENSMMDG00005008735) zgc:112052 (ENSMMDG00005008737) UQCRFS1 (ENSMMDG00005008739) rxylt1 (ENSMMDG00005008740) SRGAP1 (ENSMMDG00005008755) ENSMMDG00005009620 Cod MODERN SPECIES 22 ENSGMOG00000004912 bcl2l13 (ENSGMOG00000004932) atp6v1e1a (ENSGMOG00000004959) ENSGMOG00000004986 ENSGMOG00000005017 ENSGMOG00000005093 ENSGMOG00000029391 ENSGMOG00000003515 ENSGMOG00000033795 ENSGMOG00000031176 amn1 (ENSGMOG00000027508) etfbkmt (ENSGMOG00000018697) si:ch73-62b13.1 (ENSGMOG00000018689) mterf2 (ENSGMOG00000018671) ##20 zgc:153031 (ENSGMOG00000018663) ENSGMOG00000018642 ##22 mlc1 (ENSGMOG00000018630) panx2 (ENSGMOG00000018621) trabd (ENSGMOG00000018611) selenoo1 (ENSGMOG00000018598) mtss1la (ENSGMOG00000018555) ENSGMOG00000018507 ENSGMOG00000023458 uri1 (ENSGMOG00000018454) zgc:112052 (ENSGMOG00000022844) ENSGMOG00000018438 ENSGMOG00000018428 ENSGMOG00000018389 ENSGMOG00000007003 ENSGMOG00000006995 ENSGMOG00000006977 Protacanthopterygii ANCESTRAL SPECIES 29 ENSGT00940000158187 ENSGT00940000160423.a ENSGT00940000166645 ENSGT01050000244951.a.b.a.b.a ##17 ENSGT00530000063825.A.c.f ENSGT00940000165765 ENSGT00390000014700.a ENSGT01050000244879.b.a.b.a ENSGT00950000183132.A ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b.a ##20 ENSGT00940000165780 ENSGT00940000155455.h ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a ##22 ENSGT00390000015442 ENSGT00940000153972.C ENSGT00390000009067 ENSGT00390000005508.a.a ENSGT00940000156189.a.a ENSGT00950000183156.a.a ENSGT00940000164020.d ENSGT00950000183051.b.b ENSGT00940000156397.b ENSGT00390000002362 ENSGT00390000009077.d ENSGT00390000003526 ENSGT00950000182824.a.a.a.a.a ENSGT00940000154649.B ENSGT00940000157903 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 302 ENSGT00940000161832.b.a ENSGT00940000158037.f ENSGT00940000158187.c ENSGT00940000166645.a ENSGT01050000244951.a.b.a.b.a.f ##17 ENSGT00390000014700.a.e ENSGT01050000244879.b.a.b.a.f ENSGT00390000013899.a.a.p ENSGT00940000164185.c ENSGT00530000063817.b.a.f ##20 ENSGT00940000165780.h ENSGT00940000155455.h.c ##21 ENSGT00940000156419.a.g ##22 ENSGT00390000015442.e ENSGT00940000153972.C.c ENSGT00390000009067 ENSGT00390000005508.a.a.f ENSGT00940000156189.a.a.c ENSGT00950000183156.a.a.c ENSGT00940000164020.d.b ENSGT00950000183051.b.b.f ENSGT00940000177757 ENSGT00940000156397.b.c ENSGT00390000002362.t ENSGT00390000009077.d ENSGT00390000003526.k ENSGT00950000182824.a.a.a.a.a.e ENSGT00940000154649.B.m Salmoninae_a ANCESTRAL SPECIES 1 ENSGT00940000156910.h ENSGT00940000155210.a.a.c ENSGT00540000070023.c.b.g ENSGT00940000161832.b.a ENSGT00940000158037.f ENSGT00940000158187.c ENSGT00940000166645.a ENSGT01050000244951.a.b.a.b.a.f ##17 ENSGT00390000014700.a.e ENSGT01050000244879.b.a.b.a.f ENSGT00390000013899.a.a.p ENSGT00940000164185.c ENSGT00530000063817.b.a.f ##20 ENSGT00940000165780.h ENSGT00940000155455.h.c ##21 ENSGT00940000156419.a.g ##22 ENSGT00390000015442.e ENSGT00940000153972.C.c ENSGT00390000009067 ENSGT00390000005508.a.a.f ENSGT00940000156189.a.a.c ENSGT00950000183156.a.a.c ENSGT00940000164020.d.b ENSGT00950000183051.b.b.f ENSGT00940000156397.b.c ENSGT00390000002362.t ENSGT00390000009077.d ENSGT00390000003526.k ENSGT00950000182824.a.a.a.a.a.e ENSGT00940000154649.B.m ENSGT00940000157903.f Salmo ANCESTRAL SPECIES 45 ENSGT00940000155210.a.a.c ENSGT00540000070023.c.b.g ENSGT00940000161832.b.a ENSGT00940000158037.f ENSGT00940000158187.c ENSGT00940000166645.a ENSGT01050000244951.a.b.a.b.a.f ##17 ENSGT00390000014700.a.e ENSGT01050000244879.b.a.b.a.f ENSGT00950000183132.A.l ENSGT00390000013899.a.a.p ENSGT00940000164185.c ENSGT00530000063817.b.a.f ##20 ENSGT00940000165780.h ENSGT00940000155455.h.c ##21 ENSGT00940000156419.a.g ##22 ENSGT00390000015442.e ENSGT00940000153972.C.c ENSGT00390000009067 ENSGT00390000005508.a.a.f ENSGT00940000156189.a.a.c ENSGT00950000183156.a.a.c ENSGT00940000164020.d.b ENSGT00950000183051.b.b.f ENSGT00940000156397.b.c ENSGT00390000002362.t ENSGT00390000003526.k ENSGT00950000182824.a.a.a.a.a.e ENSGT00940000154649.B.m ENSGT00940000157903.f ENSGT00940000157742.b.c River trout MODERN SPECIES 8 ENSSTUG00000049809 ENSSTUG00000049812 nr1h4 (ENSSTUG00000049815) slc17a8 (ENSSTUG00000049871) si:ch211-245j22.3 (ENSSTUG00000050015) ppfibp1b (ENSSTUG00000050051) ##17 ENSSTUG00000050272 ric8b (ENSSTUG00000050280) rfx4 (ENSSTUG00000050288) ENSSTUG00000050326 tmem263 (ENSSTUG00000050329) si:ch73-62b13.1 (ENSSTUG00000050332) mterf2 (ENSSTUG00000050335) ##20 zgc:153031 (ENSSTUG00000050344) cry1b (ENSSTUG00000050351) ##21 ABTB3 (ENSSTUG00000050371) ##22 mlc1 (ENSSTUG00000050413) panx2 (ENSSTUG00000050425) trabd (ENSSTUG00000050432) mapk12a (ENSSTUG00000002270) mtss1la (ENSSTUG00000002460) ENSSTUG00000002765 ENSSTUG00000002772 ENSSTUG00000002789 ENSSTUG00000002808 uri1 (ENSSTUG00000002826) rxylt1 (ENSSTUG00000002852) SRGAP1 (ENSSTUG00000002927) parp12a (ENSSTUG00000003949) tbxas1 (ENSSTUG00000003996) hipk2 (ENSSTUG00000004433) Atlantic salmon MODERN SPECIES 7 si:ch211-245j22.3 (ENSSSAG00000122112) ENSSSAG00000090194 ppfibp1b (ENSSSAG00000077796) ##17 ENSSSAG00000091145 ric8b (ENSSSAG00000095755) ENSSSAG00000083506 ENSSSAG00000077673 ENSSSAG00000077665 ENSSSAG00000077657 tmem263 (ENSSSAG00000116985) si:ch73-62b13.1 (ENSSSAG00000077590) ENSSSAG00000077627 zgc:153031 (ENSSSAG00000105044) ENSSSAG00000106490 cry1b (ENSSSAG00000092438) ##21 ENSSSAG00000077053 ##22 mlc1 (ENSSSAG00000077007) panx2 (ENSSSAG00000076995) trabd (ENSSSAG00000076990) selenoo1 (ENSSSAG00000109786) ENSSSAG00000105146 mapk12a (ENSSSAG00000076668) mtss1la (ENSSSAG00000076530) ENSSSAG00000076501 ENSSSAG00000076471 ENSSSAG00000111360 ENSSSAG00000076442 uri1 (ENSSSAG00000076436) rxylt1 (ENSSSAG00000076433) ENSSSAG00000076090 PRP12 (ENSSSAG00000076045) Oncorhynchus ANCESTRAL SPECIES 2 ENSGT00940000156910.h ENSGT00940000155210.a.a.c ENSGT00540000070023.c.b.g ENSGT00940000161832.b.a ENSGT00940000158037.f ENSGT00940000158187.c ENSGT00940000166645.a ENSGT01050000244951.a.b.a.b.a.f ##17 ENSGT00390000014700.a.e ENSGT01050000244879.b.a.b.a.f ENSGT00390000013899.a.a.p ENSGT00940000164185.c ENSGT00530000063817.b.a.f ##20 ENSGT00940000165780.h ENSGT00940000155455.h.c ##21 ENSGT00940000156419.a.g ##22 ENSGT00390000015442.e ENSGT00940000153972.C.c ENSGT00390000009067 ENSGT00390000005508.a.a.f ENSGT00940000156189.a.a.c ENSGT00950000183156.a.a.c ENSGT00940000164020.d.b ENSGT00950000183051.b.b.f ENSGT00940000156397.b.c ENSGT00390000002362.t ENSGT00390000009077.d ENSGT00390000003526.k ENSGT00950000182824.a.a.a.a.a.e ENSGT00940000154649.B.m ENSGT00940000157903.f Oncorhynchus_a ANCESTRAL SPECIES 1 ENSGT00940000156910.h ENSGT00940000155210.a.a.c ENSGT00540000070023.c.b.g ENSGT00940000161832.b.a ENSGT00940000158037.f ENSGT00940000158187.c ENSGT00940000166645.a ENSGT01050000244951.a.b.a.b.a.f ##17 ENSGT00390000014700.a.e ENSGT01050000244879.b.a.b.a.f ENSGT00390000013899.a.a.p ENSGT00940000164185.c ENSGT00530000063817.b.a.f ##20 ENSGT00940000165780.h ENSGT00940000155455.h.c ##21 ENSGT00940000156419.a.g ##22 ENSGT00390000015442.e ENSGT00940000153972.C.c ENSGT00390000009067 ENSGT00390000005508.a.a.f ENSGT00940000156189.a.a.c ENSGT00950000183156.a.a.c ENSGT00940000164020.d.b ENSGT00950000183051.b.b.f ENSGT00940000156397.b.c ENSGT00390000002362.t ENSGT00390000009077.d ENSGT00390000003526.k ENSGT00950000182824.a.a.a.a.a.e ENSGT00940000154649.B.m ENSGT00940000157903.f Coho salmon MODERN SPECIES 24 nudt4a (ENSOKIG00005011228) ENSOKIG00005011237 ENSOKIG00005011254 nr1h4 (ENSOKIG00005011287) slc17a8 (ENSOKIG00005012051) si:ch211-245j22.3 (ENSOKIG00005012080) ppfibp1b (ENSOKIG00005012163) ##17 RIC8B (ENSOKIG00005013281) RFX4 (ENSOKIG00005013340) ENSOKIG00005013406 tmem263 (ENSOKIG00005013442) si:ch73-62b13.1 (ENSOKIG00005028353) ENSOKIG00005028358 zgc:153031 (ENSOKIG00005028380) cry1b (ENSOKIG00005028413) ##21 ABTB3 (ENSOKIG00005028845) ##22 mlc1 (ENSOKIG00005029086) panx2 (ENSOKIG00005029279) trabd (ENSOKIG00005029309) selenoo1 (ENSOKIG00005029323) mapk12a (ENSOKIG00005029405) mtss1la (ENSOKIG00005029729) ENSOKIG00005030369 ENSOKIG00005030404 ENSOKIG00005030431 ENSOKIG00005030445 uri1 (ENSOKIG00005030518) zgc:112052 (ENSOKIG00005030538) rxylt1 (ENSOKIG00005030568) SRGAP1 (ENSOKIG00005030869) parp12a (ENSOKIG00005034284) Chinook salmon MODERN SPECIES 35 nudt4a (ENSOTSG00005008651) ube2nb (ENSOTSG00005008653) ENSOTSG00005008676 nr1h4 (ENSOTSG00005008684) slc17a8 (ENSOTSG00005009158) si:ch211-245j22.3 (ENSOTSG00005009159) ppfibp1b (ENSOTSG00005009162) ##17 ric8b (ENSOTSG00005010233) rfx4 (ENSOTSG00005010238) ENSOTSG00005010247 tmem263 (ENSOTSG00005010251) si:ch73-62b13.1 (ENSOTSG00005010252) mterf2 (ENSOTSG00005010253) ##20 zgc:153031 (ENSOTSG00005010254) cry1b (ENSOTSG00005010256) ##21 ABTB3 (ENSOTSG00005010563) ##22 mlc1 (ENSOTSG00005010703) panx2 (ENSOTSG00005010704) trabd (ENSOTSG00005010705) mapk12a (ENSOTSG00005010706) Rainbow trout MODERN SPECIES slc17a8 (ENSOMYG00000045652) si:ch211-245j22.3 (ENSOMYG00000045840) ppfibp1b (ENSOMYG00000045939) ##17 ENSOMYG00000051579 ENSOMYG00000046376 ENSOMYG00000050477 ENSOMYG00000046391 ENSOMYG00000056055 ENSOMYG00000068638 tmem263 (ENSOMYG00000066473) si:ch73-62b13.1 (ENSOMYG00000000055) mterf2 (ENSOMYG00000000097) ##20 zgc:153031 (ENSOMYG00000068207) cry1b (ENSOMYG00000000195) ##21 ENSOMYG00000068578 ENSOMYG00000000529 ##22 mlc1 (ENSOMYG00000000622) panx2 (ENSOMYG00000000652) trabd (ENSOMYG00000000670) ENSOMYG00000065487 mapk12a (ENSOMYG00000000785) mtss1la (ENSOMYG00000000985) ENSOMYG00000052823 ENSOMYG00000059148 ENSOMYG00000001088 ENSOMYG00000001092 uri1 (ENSOMYG00000001101) zgc:112052 (ENSOMYG00000001114) rxylt1 (ENSOMYG00000001132) ENSOMYG00000001992 parp12a (ENSOMYG00000002356) Huchen MODERN SPECIES 326 ENSHHUG00000048898 ric8b (ENSHHUG00000048902) rfx4 (ENSHHUG00000048915) ENSHHUG00000048917 ENSHHUG00000048919 ENSHHUG00000048920 ENSHHUG00000048931 tmem263 (ENSHHUG00000048940) si:ch73-62b13.1 (ENSHHUG00000048944) zgc:153031 (ENSHHUG00000048946) cry1b (ENSHHUG00000048951) ##21 ABTB3 (ENSHHUG00000049012) ##22 mlc1 (ENSHHUG00000049051) panx2 (ENSHHUG00000049059) trabd (ENSHHUG00000049062) selenoo1 (ENSHHUG00000049068) mapk12a (ENSHHUG00000049116) mtss1la (ENSHHUG00000049263) ENSHHUG00000049296 ENSHHUG00000049300 ENSHHUG00000049302 Salmoninae ANCESTRAL SPECIES 148 ENSGT00390000013899.a.a.o ENSGT00940000164185.d ENSGT00530000063817.b.a.e ##20 ENSGT00940000165780.g ENSGT00940000155455.h.d ##21 ENSGT00940000165530.a.a ENSGT00940000156419.a.h ##22 ENSGT00390000015442.f ENSGT00940000153972.C.d ENSGT00390000005508.a.a.e ENSGT00940000156189.a.a.d ENSGT00950000183156.a.a.d ENSGT00940000164020.d.a ENSGT00950000183051.b.b.e ENSGT00940000156397.b.d ENSGT00390000002362.s ENSGT00390000001014.`b.a.h ENSGT00390000003526.l ENSGT00950000182824.a.a.a.a.a.f ENSGT00940000154649.B.n ENSGT00940000157903.e ENSGT00940000157742.b.d Salmoninae_a ANCESTRAL SPECIES 13 ENSGT00940000158187.d ENSGT00940000160423.a ENSGT00940000166645.b ENSGT01050000244951.a.b.a.b.a.e ##17 ENSGT00530000063825.A.c.f ENSGT00940000165765 ENSGT00390000014700.a.f ENSGT01050000244879.b.a.b.a.e ENSGT00950000183132.A ENSGT00940000164832.e.b ENSGT00390000013899.a.a.o ENSGT00940000164185.d ENSGT00530000063817.b.a.e ##20 ENSGT00940000165780.g ENSGT00940000155455.h.d ##21 ENSGT00940000156419.a.h ##22 ENSGT00390000015442.f ENSGT00940000153972.C.d ENSGT00390000005508.a.a.e ENSGT00940000156189.a.a.d ENSGT00950000183156.a.a.d ENSGT00940000164020.d.a ENSGT00950000183051.b.b.e ENSGT00940000156397.b.d ENSGT00390000002362.s ENSGT00390000001014.`b.a.h ENSGT00390000003526.l ENSGT00950000182824.a.a.a.a.a.f ENSGT00940000154649.B.n ENSGT00940000157903.e ENSGT00940000157742.b.d Salmo ANCESTRAL SPECIES 9 ENSGT00940000158037.e ENSGT00940000158187.d ENSGT00940000160423.a ENSGT00940000166645.b ENSGT01050000244951.a.b.a.b.a.e ##17 ENSGT00530000063825.A.c.f ENSGT00940000165765 ENSGT00390000014700.a.f ENSGT01050000244879.b.a.b.a.e ENSGT00950000183132.A.k ENSGT00940000164832.e.b ENSGT00390000013899.a.a.o ENSGT00940000164185.d ENSGT00530000063817.b.a.e ##20 ENSGT00940000155455.h.d ##21 ENSGT00940000156419.a.h ##22 ENSGT00390000015442.f ENSGT00940000153972.C.d ENSGT00390000005508.a.a.e ENSGT00940000156189.a.a.d ENSGT00950000183156.a.a.d ENSGT00940000164020.d.a ENSGT00950000183051.b.b.e ENSGT00940000156397.b.d ENSGT00390000002362.s ENSGT00390000001014.`b.a.h ENSGT00390000003526.l ENSGT00950000182824.a.a.a.a.a.f ENSGT00940000154649.B.n ENSGT00940000157903.e ENSGT00940000157742.b.d River trout MODERN SPECIES 37 slc17a8 (ENSSTUG00000007261) arntl2 (ENSSTUG00000007309) si:ch211-245j22.3 (ENSSTUG00000007525) ppfibp1b (ENSSTUG00000007629) ##17 endouc (ENSSTUG00000008141) ENSSTUG00000008157 ric8b (ENSSTUG00000008177) rfx4 (ENSSTUG00000008214) POLR3B (ENSSTUG00000008246) ENSSTUG00000008594 ENSSTUG00000008629 tmem263 (ENSSTUG00000008637) si:ch73-62b13.1 (ENSSTUG00000008649) mterf2 (ENSSTUG00000008656) ##20 cry1b (ENSSTUG00000008668) ##21 ABTB3 (ENSSTUG00000008770) ##22 mlc1 (ENSSTUG00000009122) panx2 (ENSSTUG00000009191) selenoo1 (ENSSTUG00000009203) mapk12a (ENSSTUG00000009296) mtss1la (ENSSTUG00000011314) ENSSTUG00000011599 ENSSTUG00000011663 ENSSTUG00000011670 uri1 (ENSSTUG00000011686) uqcrfs1 (ENSSTUG00000011706) rxylt1 (ENSSTUG00000011719) SRGAP1 (ENSSTUG00000012057) parp12a (ENSSTUG00000016632) tbxas1 (ENSSTUG00000016725) hipk2 (ENSSTUG00000017457) Atlantic salmon MODERN SPECIES 1 nr1h4 (ENSSSAG00000055846) ENSSSAG00000084768 slc17a8 (ENSSSAG00000057061) arntl2 (ENSSSAG00000059155) si:ch211-245j22.3 (ENSSSAG00000059268) ppfibp1b (ENSSSAG00000059704) ##17 endouc (ENSSSAG00000071184) ENSSSAG00000071189 rfx4 (ENSSSAG00000071211) ENSSSAG00000071265 ENSSSAG00000065899 tmem263 (ENSSSAG00000100537) si:ch73-62b13.1 (ENSSSAG00000092172) mterf2 (ENSSSAG00000100696) ##20 cry1b (ENSSSAG00000071693) ##21 btbd11 (ENSSSAG00000071875) ##22 mlc1 (ENSSSAG00000071981) panx2 (ENSSSAG00000086268) selenoo1 (ENSSSAG00000003932) mapk12a (ENSSSAG00000003974) mtss1la (ENSSSAG00000004185) ENSSSAG00000004764 ENSSSAG00000004842 ENSSSAG00000121469 uri1 (ENSSSAG00000004857) ENSSSAG00000004878 rxylt1 (ENSSSAG00000004890) ENSSSAG00000004979 ENSSSAG00000106367 parp12a (ENSSSAG00000005381) tbxas1 (ENSSSAG00000005440) Oncorhynchus ANCESTRAL SPECIES 10 ENSGT00940000158187.d ENSGT00940000160423.a ENSGT00940000166645.b ENSGT01050000244951.a.b.a.b.a.e ##17 ENSGT00530000063825.A.c.f ENSGT00940000165765 ENSGT00390000014700.a.f ENSGT01050000244879.b.a.b.a.e ENSGT00950000183132.A ENSGT00940000164832.e.b.f ENSGT00390000013899.a.a.o ENSGT00940000164185.d ENSGT00530000063817.b.a.e ##20 ENSGT00940000165780.g ENSGT00940000155455.h.d ##21 ENSGT00940000156419.a.h ##22 ENSGT00940000153972.C.d ENSGT00390000005508.a.a.e ENSGT00940000156189.a.a.d ENSGT00950000183156.a.a.d ENSGT00940000164020.d.a ENSGT00950000183051.b.b.e ENSGT00940000156397.b.d ENSGT00390000002362.s ENSGT00390000001014.`b.a.h ENSGT00390000003526.l ENSGT00950000182824.a.a.a.a.a.f ENSGT00940000154649.B.n ENSGT00940000157903.e ENSGT00940000157742.b.d ENSGT00530000063472.b.a.f Oncorhynchus_a ANCESTRAL SPECIES 5 ENSGT00940000160423.a ENSGT00940000166645.b ENSGT01050000244951.a.b.a.b.a.e ##17 ENSGT00390000005178.a ENSGT00530000063825.A.c.f ENSGT00940000165765 ENSGT00390000014700.a.f ENSGT01050000244879.b.a.b.a.e ENSGT00950000183132.A ENSGT00940000164832.e.b.f ENSGT00390000013899.a.a.o ENSGT00940000164185.d ENSGT00530000063817.b.a.e ##20 ENSGT00940000165780.g ENSGT00940000155455.h.d ##21 ENSGT00940000156419.a.h ##22 ENSGT00940000153972.C.d ENSGT00390000005508.a.a.e ENSGT00940000156189.a.a.d ENSGT00950000183156.a.a.d ENSGT00940000164020.d.a ENSGT00950000183051.b.b.e ENSGT00940000156397.b.d ENSGT00390000002362.s ENSGT00390000001014.`b.a.h ENSGT00390000003526.l ENSGT00950000182824.a.a.a.a.a.f ENSGT00940000154649.B.n ENSGT00940000157903.e ENSGT00940000157742.b.d ENSGT00530000063472.b.a.f Coho salmon MODERN SPECIES 14 slc17a8 (ENSOKIG00005047859) arntl2 (ENSOKIG00005048022) ppfibp1b (ENSOKIG00005048119) ##17 REP15 (ENSOKIG00005006083) endouc (ENSOKIG00005006096) ENSOKIG00005006112 ric8b (ENSOKIG00005006140) rfx4 (ENSOKIG00005006189) ENSOKIG00005006322 ENSOKIG00005006671 tmem263 (ENSOKIG00005006694) si:ch73-62b13.1 (ENSOKIG00005006699) mterf2 (ENSOKIG00005006702) ##20 zgc:153031 (ENSOKIG00005006707) cry1b (ENSOKIG00005006749) ##21 ABTB3 (ENSOKIG00005007030) ##22 panx2 (ENSOKIG00005007333) selenoo1 (ENSOKIG00005007322) mapk12a (ENSOKIG00005007366) mtss1la (ENSOKIG00005007702) ENSOKIG00005007998 ENSOKIG00005008087 ENSOKIG00005008092 ENSOKIG00005008097 uri1 (ENSOKIG00005008110) ENSOKIG00005008120 UQCRFS1 (ENSOKIG00005008126) rxylt1 (ENSOKIG00005008139) SRGAP1 (ENSOKIG00005008355) parp12a (ENSOKIG00005012261) tbxas1 (ENSOKIG00005012320) Chinook salmon MODERN SPECIES 10 arntl2 (ENSOTSG00005037846) si:ch211-245j22.3 (ENSOTSG00005037885) ppfibp1b (ENSOTSG00005037922) ##17 ENSOTSG00005040059 endouc (ENSOTSG00005040060) ENSOTSG00005040061 ric8b (ENSOTSG00005040062) rfx4 (ENSOTSG00005040075) ENSOTSG00005040083 ENSOTSG00005040088 tmem263 (ENSOTSG00005040090) si:ch73-62b13.1 (ENSOTSG00005040093) mterf2 (ENSOTSG00005040095) ##20 zgc:153031 (ENSOTSG00005040098) cry1b (ENSOTSG00005040102) ##21 ABTB3 (ENSOTSG00005040135) ##22 panx2 (ENSOTSG00005040172) selenoo1 (ENSOTSG00005040174) mapk12a (ENSOTSG00005040175) mtss1la (ENSOTSG00005040176) ENSOTSG00005040236 ENSOTSG00005040238 ENSOTSG00005040240 uri1 (ENSOTSG00005040241) ENSOTSG00005040243 uqcrfs1 (ENSOTSG00005040244) ENSOTSG00005040246 SRGAP1 (ENSOTSG00005040267) parp12a (ENSOTSG00005044338) tbxas1 (ENSOTSG00005044349) hipk2 (ENSOTSG00005044416) Rainbow trout MODERN SPECIES 11 arntl2 (ENSOMYG00000023343) si:ch211-245j22.3 (ENSOMYG00000023470) ppfibp1b (ENSOMYG00000024160) ##17 endouc (ENSOMYG00000027424) ENSOMYG00000027553 ric8b (ENSOMYG00000027467) rfx4 (ENSOMYG00000027576) POLR3B (ENSOMYG00000007132) ENSOMYG00000007239 tmem263 (ENSOMYG00000076435) si:ch73-62b13.1 (ENSOMYG00000007265) ENSOMYG00000007280 mterf2 (ENSOMYG00000007298) ##20 zgc:153031 (ENSOMYG00000007309) cry1b (ENSOMYG00000007326) ##21 ENSOMYG00000008112 ##22 ENSOMYG00000008627 panx2 (ENSOMYG00000008700) selenoo1 (ENSOMYG00000008723) mapk12a (ENSOMYG00000009070) mtss1la (ENSOMYG00000009663) ENSOMYG00000009746 ENSOMYG00000009782 ENSOMYG00000009812 uri1 (ENSOMYG00000009826) rxylt1 (ENSOMYG00000009856) ENSOMYG00000010832 parp12a (ENSOMYG00000016113) tbxas1 (ENSOMYG00000016166) hipk2 (ENSOMYG00000017352) ENSOMYG00000017865 Huchen MODERN SPECIES 730 cnot6b (ENSHHUG00000011811) ENSHHUG00000011857 tmem263 (ENSHHUG00000011884) si:ch73-62b13.1 (ENSHHUG00000011895) mterf2 (ENSHHUG00000011901) ##20 zgc:153031 (ENSHHUG00000011904) cry1b (ENSHHUG00000011918) ##21 ENSHHUG00000012192 ENSHHUG00000012195 ##22 mlc1 (ENSHHUG00000012205) panx2 (ENSHHUG00000012234) selenoo1 (ENSHHUG00000012241) mapk12a (ENSHHUG00000012247) mtss1la (ENSHHUG00000012357) ENSHHUG00000012420 ENSHHUG00000012424 ENSHHUG00000012428 uri1 (ENSHHUG00000012437) Northern pike MODERN SPECIES 18 GLDN (ENSELUG00000020580) CYP19A1 (ENSELUG00000020564) AP4E1 (ENSELUG00000020541) gnb5a (ENSELUG00000020529) MYO5C (ENSELUG00000020511) ENSELUG00000025343 ENSELUG00000024715 ENSELUG00000033783 ENSELUG00000027032 ENSELUG00000031741 tmem263 (ENSELUG00000033928) si:ch73-62b13.1 (ENSELUG00000020366) mterf2 (ENSELUG00000020338) ##20 zgc:153031 (ENSELUG00000020328) cry1b (ENSELUG00000020312) ##21 ABTB3 (ENSELUG00000020253) ##22 mlc1 (ENSELUG00000020166) panx2 (ENSELUG00000020124) trabd (ENSELUG00000020091) selenoo1 (ENSELUG00000020066) mapk12a (ENSELUG00000020003) mtss1la (ENSELUG00000019952) ENSELUG00000019804 ENSELUG00000019722 ENSELUG00000024725 ENSELUG00000019711 ENSELUG00000019703 uri1 (ENSELUG00000019669) zgc:112052 (ENSELUG00000019631) rxylt1 (ENSELUG00000019619) SRGAP1 (ENSELUG00000019581) Osteoglossiformes ANCESTRAL SPECIES 695 ENSGT00940000156419 #22 ENSGT00530000063540.b P. kingsleyae MODERN SPECIES 564 ENSPKIG00000003725 ENSPKIG00000003709 btbd11a (ENSPKIG00000003586) #22 apex1 (ENSPKIG00000003504) Asian bonytongue MODERN SPECIES 20 ENSSFOG00015001306 ENSSFOG00015001323 aldob (ENSSFOG00015001456) ENSSFOG00015001497 cyb5r3 (ENSSFOG00015001511) #16 endouc (ENSSFOG00015001560) rfx4 (ENSSFOG00015001604) ric8b (ENSSFOG00015001706) ENSSFOG00015001714 tmem263 (ENSSFOG00015029590) tnnt2c (ENSSFOG00015001731) #19 si:ch73-62b13.1 (ENSSFOG00015001750) ENSSFOG00015001755 zgc:153031 (ENSSFOG00015001770) cry1b (ENSSFOG00015001818) #21 btbd11a (ENSSFOG00015001877) #22 apex1 (ENSSFOG00015001948) ENSSFOG00015030362 mlc1 (ENSSFOG00015001979) si:ch211-214j24.10 (ENSSFOG00015001996) ENSSFOG00015029875 drc1 (ENSSFOG00015032400) TUBGCP6 (ENSSFOG00015002033) kcnj8 (ENSSFOG00015002076) cmasa (ENSSFOG00015002083) ENSSFOG00015002124 shisal1a (ENSSFOG00015002136) PARVB (ENSSFOG00015002167) rint1 (ENSSFOG00015002236) pus7 (ENSSFOG00015002315) ENSSFOG00015002398 Spotted gar DUPLICATION Spotted gar MODERN SPECIES 674 ppfibp1b (ENSLOCG00000015237) #17 REP15 (ENSLOCG00000017894) cyb5r3 (ENSLOCG00000015246) #16 si:dkey-222f8.3 (ENSLOCG00000015248) POLR3B (ENSLOCG00000015249) rfx4 (ENSLOCG00000015258) ric8b (ENSLOCG00000015262) ENSLOCG00000015265 tmem263 (ENSLOCG00000015268) tnnt2c (ENSLOCG00000017895) #19 ENSLOCG00000017896 si:ch73-62b13.1 (ENSLOCG00000015269) mterf2 (ENSLOCG00000017897) #20 zgc:153031 (ENSLOCG00000015270) cry1b (ENSLOCG00000015272) #21 btbd11a (ENSLOCG00000015275) #22 pwp1 (ENSLOCG00000015280) ENSLOCG00000017898 ENSLOCG00000015283 mrpl42 (ENSLOCG00000015284) ube2na (ENSLOCG00000015285) nudt4b (ENSLOCG00000015286) EEA1 (ENSLOCG00000015288) plekhg7 (ENSLOCG00000015295) ints13 (ENSLOCG00000015297) ENSLOCG00000015301 ITPR2 (ENSLOCG00000015302) sspn (ENSLOCG00000015325) bhlhe41 (ENSLOCG00000015327) rassf8b (ENSLOCG00000015329) ENSLOCG00000015331 Spotted gar MODERN SPECIES 669 ccnd3 (ENSLOCG00000012668) bysl (ENSLOCG00000012661) med20 (ENSLOCG00000012654) usp49 (ENSLOCG00000012648) ENSLOCG00000012643 BAK1 (ENSLOCG00000012641) uqcc2 (ENSLOCG00000012635) IP6K3 (ENSLOCG00000012631) LEMD2 (ENSLOCG00000012624) ENSLOCG00000012601 ppil1 (ENSLOCG00000012595) PSRC1 (ENSLOCG00000012592) celsr2 (ENSLOCG00000012563) sars1 (ENSLOCG00000012557) ENSLOCG00000012555 ENSLOCG00000012541 #22 zgc:64051 (ENSLOCG00000012534) ENSLOCG00000012526 cdkn1a (ENSLOCG00000012523) srsf3a (ENSLOCG00000012519) fkbp5 (ENSLOCG00000012508) slc6a22.1 (ENSLOCG00000012488) ENSLOCG00000012483 PTPN7 (ENSLOCG00000012475) arl8a (ENSLOCG00000012467) GPR37L1 (ENSLOCG00000012462) ELF3 (ENSLOCG00000012450) itpr3 (ENSLOCG00000012422) apobec2b (ENSLOCG00000012415) oard1 (ENSLOCG00000012410) opn1mw1 (ENSLOCG00000012404) Reedfish DUPLICATION Reedfish MODERN SPECIES REP15 (ENSECRG00000006151) cyb5r3 (ENSECRG00000006143) #16 endouc (ENSECRG00000006132) POLR3B (ENSECRG00000006087) rfx4 (ENSECRG00000006058) ric8b (ENSECRG00000006043) ENSECRG00000006030 tmem263 (ENSECRG00000006021) tnnt2c (ENSECRG00000006018) #19 si:ch73-62b13.1 (ENSECRG00000006015) mterf2 (ENSECRG00000006010) #20 zgc:153031 (ENSECRG00000006001) cry1b (ENSECRG00000005975) #21 ENSECRG00000005964 ENSECRG00000005957 btbd11a (ENSECRG00000005938) #22 ENSECRG00000005926 pwp1 (ENSECRG00000005909) ENSECRG00000005897 sbf1 (ENSECRG00000005791) ADM2 (ENSECRG00000005762) miox (ENSECRG00000005751) lmf2a (ENSECRG00000005743) st8sia1 (ENSECRG00000005734) c2cd5 (ENSECRG00000005716) ENSECRG00000005704 ETNK1 (ENSECRG00000005696) sox5 (ENSECRG00000005687) ENSECRG00000005684 ENSECRG00000005676 ENSECRG00000005663 Reedfish MODERN SPECIES 11 ENSECRG00000012640 BRPF3 (ENSECRG00000012663) MAPK13 (ENSECRG00000012710) mapk14a (ENSECRG00000012813) srpk1b (ENSECRG00000012901) ENSECRG00000012924 lhfpl5b (ENSECRG00000012936) CLPS (ENSECRG00000012947) KIF21B (ENSECRG00000012971) cpne5a (ENSECRG00000012993) ppil1 (ENSECRG00000013023) ENSECRG00000013050 celsr2 (ENSECRG00000013108) sars1 (ENSECRG00000013207) ENSECRG00000013242 ENSECRG00000013274 #22 ENSECRG00000013323 ENSECRG00000013347 ENSECRG00000013383 ENSECRG00000013402 SRSF3 (ENSECRG00000013416) SRSF3 (ENSECRG00000013440) ENSECRG00000013460 ENSECRG00000013471 fkbp5 (ENSECRG00000013521) ENSECRG00000013612 ENSECRG00000013658 ENSECRG00000013681 arl8a (ENSECRG00000013702) GPR37L1 (ENSECRG00000013722) ELF3 (ENSECRG00000013734) Sarcopterygii ANCESTRAL SPECIES 12 ENSGT00940000166645 ENSGT00940000158899 #18 ENSGT00390000005178 ENSGT00940000153962.b #16 ENSGT00530000063825.A.c ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000161832.b ENSGT00940000158225 #34 ENSGT00940000161249 ENSGT00940000155867 ENSGT00940000164603 ENSGT00440000033504.B ENSGT00940000156857 ENSGT00940000155180.b ENSGT00940000163946 ENSGT00940000160821 ENSGT00940000157821 ENSGT00390000010229 ENSGT00940000153414.A ENSGT00940000159401 Tetrapoda ANCESTRAL SPECIES 22 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000158225 #34 ENSGT00940000161249 ENSGT00940000155867 ENSGT00940000164603 ENSGT00440000033504.B ENSGT00940000156857 ENSGT00940000155180.b ENSGT00940000163946 ENSGT00940000160821 ENSGT00940000157821 ENSGT00390000010229 ENSGT00940000153414.A ENSGT00940000159401 ENSGT00390000006865 Amniota ANCESTRAL SPECIES 5 ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Sauria ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Lepidosauria ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT01100000264758 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Episquamata ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT01100000264758 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Toxicofera ANCESTRAL SPECIES 7 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT01030000234881 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Elapidae ANCESTRAL SPECIES 6 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a.i ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000155415.e ENSGT00940000159601 ENSGT00940000155415.f ENSGT00940000158497 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Elapidae_a ANCESTRAL SPECIES 1 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a.i ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000155415.e ENSGT00940000159601 ENSGT00940000155415.f ENSGT00940000158497 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Acanthophiinae ANCESTRAL SPECIES ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a.i ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT00390000006670 ENSGT00940000155415.e ENSGT00940000159601 ENSGT00940000158497 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 ENSGT00940000160809 Mainland tiger snake MODERN SPECIES 6 ENSNSUG00000013283 SLC41A2 (ENSNSUG00000013282) ALDH1L2 (ENSNSUG00000013263) ENSNSUG00000013262 WASHC4 (ENSNSUG00000013261) APPL2 (ENSNSUG00000013031) NUAK1 (ENSNSUG00000013028) CKAP4 (ENSNSUG00000013027) TCP11L2 (ENSNSUG00000013024) POLR3B (ENSNSUG00000012871) RFX4 (ENSNSUG00000012867) ENSNSUG00000012865 TMEM263 (ENSNSUG00000012864) MTERF2 (ENSNSUG00000012863) #20 CRY1 (ENSNSUG00000012536) #21 ABTB3 (ENSNSUG00000012378) #22 PWP1 (ENSNSUG00000012377) PRDM4 (ENSNSUG00000012353) ASCL4 (ENSNSUG00000012352) RTCB (ENSNSUG00000012332) FBXO7 (ENSNSUG00000012331) TIMP3 (ENSNSUG00000012330) SYN3 (ENSNSUG00000012326) LARGE1 (ENSNSUG00000012298) ENSNSUG00000012293 HMGXB4 (ENSNSUG00000012291) TOM1 (ENSNSUG00000012289) HMOX1 (ENSNSUG00000012288) MCM5 (ENSNSUG00000012266) RASD2 (ENSNSUG00000012265) MB (ENSNSUG00000012264) Eastern brown snake MODERN SPECIES ENSPTXG00000008569 SLC41A2 (ENSPTXG00000008570) ENSPTXG00000008571 ALDH1L2 (ENSPTXG00000008572) WASHC4 (ENSPTXG00000008575) APPL2 (ENSPTXG00000008576) NUAK1 (ENSPTXG00000008577) CKAP4 (ENSPTXG00000008578) TCP11L2 (ENSPTXG00000008579) POLR3B (ENSPTXG00000008580) RFX4 (ENSPTXG00000008581) RIC8B (ENSPTXG00000008582) TMEM263 (ENSPTXG00000008583) MTERF2 (ENSPTXG00000008584) #20 CRY1 (ENSPTXG00000008585) #21 ABTB3 (ENSPTXG00000008586) #22 PWP1 (ENSPTXG00000008587) PRDM4 (ENSPTXG00000008588) ASCL4 (ENSPTXG00000008589) RTCB (ENSPTXG00000008590) FBXO7 (ENSPTXG00000008592) SYN3 (ENSPTXG00000008593) TIMP3 (ENSPTXG00000008595) LARGE1 (ENSPTXG00000008596) HMGXB4 (ENSPTXG00000008598) TOM1 (ENSPTXG00000008599) HMOX1 (ENSPTXG00000008600) MCM5 (ENSPTXG00000008601) RASD2 (ENSPTXG00000000013) MB (ENSPTXG00000000022) ENSPTXG00000000033 Indian cobra MODERN SPECIES 6 ENSNNAG00000013985 SLC41A2 (ENSNNAG00000013954) ENSNNAG00000013941 ALDH1L2 (ENSNNAG00000013872) WASHC4 (ENSNNAG00000013442) APPL2 (ENSNNAG00000012615) NUAK1 (ENSNNAG00000012510) CKAP4 (ENSNNAG00000012482) TCP11L2 (ENSNNAG00000012455) POLR3B (ENSNNAG00000012420) RFX4 (ENSNNAG00000012234) RIC8B (ENSNNAG00000012151) TMEM263 (ENSNNAG00000012133) MTERF2 (ENSNNAG00000012096) #20 CRY1 (ENSNNAG00000012075) #21 ABTB3 (ENSNNAG00000010714) #22 PWP1 (ENSNNAG00000010602) PRDM4 (ENSNNAG00000010513) ASCL4 (ENSNNAG00000010494) ENSNNAG00000010460 FBXO7 (ENSNNAG00000010430) TIMP3 (ENSNNAG00000010407) SYN3 (ENSNNAG00000010124) LARGE1 (ENSNNAG00000009142) HMGXB4 (ENSNNAG00000009039) TOM1 (ENSNNAG00000008970) HMOX1 (ENSNNAG00000008935) MCM5 (ENSNNAG00000008773) RASD2 (ENSNNAG00000008739) MB (ENSNNAG00000008723) ENSNNAG00000008468 Lizard MODERN SPECIES 4 ENSACAG00000042675 APPL2 (ENSACAG00000015569) NUAK1 (ENSACAG00000015532) ENSACAG00000043274 CKAP4 (ENSACAG00000015528) TCP11L2 (ENSACAG00000015487) POLR3B (ENSACAG00000015400) ENSACAG00000042437 ENSACAG00000041163 ENSACAG00000015355 RIC8B (ENSACAG00000015295) TMEM263 (ENSACAG00000025074) MTERF2 (ENSACAG00000015290) #20 ENSACAG00000015184 #21 ENSACAG00000037569 ABTB3 (ENSACAG00000015113) #22 ENSACAG00000014954 PRDM4 (ENSACAG00000014907) RTCB (ENSACAG00000014817) BPIFC (ENSACAG00000032752) FBXO7 (ENSACAG00000014762) SYN3 (ENSACAG00000014584) ENSACAG00000029404 TIMP3 (ENSACAG00000038787) ENSACAG00000038549 ENSACAG00000014469 ENSACAG00000037477 ENSACAG00000039672 ISX (ENSACAG00000042533) HMGXB4 (ENSACAG00000016748) ENSACAG00000034937 Laterata ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT01100000264758 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Common wall lizard MODERN SPECIES 1 ENSPMRG00000010825 ALDH1L2 (ENSPMRG00000010810) ENSPMRG00000010803 WASHC4 (ENSPMRG00000010765) APPL2 (ENSPMRG00000010749) ENSPMRG00000010742 NUAK1 (ENSPMRG00000010731) CKAP4 (ENSPMRG00000010723) TCP11L2 (ENSPMRG00000010719) POLR3B (ENSPMRG00000010696) RFX4 (ENSPMRG00000010681) RIC8B (ENSPMRG00000010619) TMEM263 (ENSPMRG00000010596) MTERF2 (ENSPMRG00000010589) #20 CRY1 (ENSPMRG00000010579) #21 ABTB3 (ENSPMRG00000010347) #22 PWP1 (ENSPMRG00000010290) PRDM4 (ENSPMRG00000010281) ASCL4 (ENSPMRG00000010274) RTCB (ENSPMRG00000010269) FBXO7 (ENSPMRG00000010243) TIMP3 (ENSPMRG00000010226) SYN3 (ENSPMRG00000010198) ENSPMRG00000010189 LARGE1 (ENSPMRG00000010187) ISX (ENSPMRG00000010180) HMGXB4 (ENSPMRG00000010154) TOM1 (ENSPMRG00000010118) HMOX1 (ENSPMRG00000010104) MCM5 (ENSPMRG00000010060) RASD2 (ENSPMRG00000010047) Argentine black and white tegu MODERN SPECIES 6 SLC41A2 (ENSSMRG00000015907) ENSSMRG00000015906 ALDH1L2 (ENSSMRG00000015905) WASHC4 (ENSSMRG00000015904) APPL2 (ENSSMRG00000015903) ENSSMRG00000015901 NUAK1 (ENSSMRG00000015900) CKAP4 (ENSSMRG00000015899) TCP11L2 (ENSSMRG00000015897) POLR3B (ENSSMRG00000015896) RFX4 (ENSSMRG00000015893) RIC8B (ENSSMRG00000015891) TMEM263 (ENSSMRG00000015890) MTERF2 (ENSSMRG00000015889) #20 CRY1 (ENSSMRG00000015888) #21 ABTB3 (ENSSMRG00000015887) #22 PWP1 (ENSSMRG00000015886) PRDM4 (ENSSMRG00000015885) ASCL4 (ENSSMRG00000015884) RTCB (ENSSMRG00000015883) BPIFC (ENSSMRG00000015882) FBXO7 (ENSSMRG00000015881) TIMP3 (ENSSMRG00000015879) SYN3 (ENSSMRG00000015878) ENSSMRG00000015877 ENSSMRG00000015876 ENSSMRG00000015875 LARGE1 (ENSSMRG00000015873) HMGXB4 (ENSSMRG00000015767) TOM1 (ENSSMRG00000015765) HMOX1 (ENSSMRG00000015763) tuatara MODERN SPECIES 952 ABTB3 (ENSSPUG00000012869) #22 ENSSPUG00000012850 ENSSPUG00000012841 PRDM4 (ENSSPUG00000012824) RTCB (ENSSPUG00000012814) FBXO7 (ENSSPUG00000012801) SYN3 (ENSSPUG00000012789) TIMP3 (ENSSPUG00000012781) Archelosauria ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Cryptodira ANCESTRAL SPECIES 10 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT01100000264758 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000154936.qb ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Testudinoidea ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT01100000264758 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000154936.qb ENSGT00940000158497 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Emydidae ANCESTRAL SPECIES 5 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT01100000264758 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000154936.qb ENSGT00940000158497 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Three-toed box turtle MODERN SPECIES 118 SLC41A2 (ENSTMTG00000019122) ENSTMTG00000019111 ALDH1L2 (ENSTMTG00000019061) WASHC4 (ENSTMTG00000018990) APPL2 (ENSTMTG00000017891) ENSTMTG00000017834 NUAK1 (ENSTMTG00000017818) CKAP4 (ENSTMTG00000017810) TCP11L2 (ENSTMTG00000017798) POLR3B (ENSTMTG00000017359) RFX4 (ENSTMTG00000017214) RIC8B (ENSTMTG00000017192) TMEM263 (ENSTMTG00000017185) MTERF2 (ENSTMTG00000017181) #20 CRY1 (ENSTMTG00000017147) #21 ABTB3 (ENSTMTG00000016579) #22 PWP1 (ENSTMTG00000016520) PRDM4 (ENSTMTG00000016498) ASCL4 (ENSTMTG00000016489) RTCB (ENSTMTG00000016470) FBXO7 (ENSTMTG00000016444) ENSTMTG00000016421 SYN3 (ENSTMTG00000016361) ENSTMTG00000016351 LARGE1 (ENSTMTG00000016321) ENSTMTG00000016306 HMGXB4 (ENSTMTG00000016283) TOM1 (ENSTMTG00000016250) HMOX1 (ENSTMTG00000016231) MCM5 (ENSTMTG00000016097) RASD2 (ENSTMTG00000016077) painted turtle MODERN SPECIES 2381 SLC41A2 (ENSCPBG00000023226) ENSCPBG00000023225 ALDH1L2 (ENSCPBG00000023220) WASHC4 (ENSCPBG00000023215) APPL2 (ENSCPBG00000023209) ENSCPBG00000023208 NUAK1 (ENSCPBG00000023206) CKAP4 (ENSCPBG00000023205) TCP11L2 (ENSCPBG00000023203) POLR3B (ENSCPBG00000023199) RFX4 (ENSCPBG00000023197) RIC8B (ENSCPBG00000023196) TMEM263 (ENSCPBG00000023195) MTERF2 (ENSCPBG00000023194) #20 CRY1 (ENSCPBG00000023193) #21 ABTB3 (ENSCPBG00000023191) #22 PWP1 (ENSCPBG00000023189) ASCL4 (ENSCPBG00000023188) PRDM4 (ENSCPBG00000023187) RTCB (ENSCPBG00000023184) ENSCPBG00000023182 TIMP3 (ENSCPBG00000023180) SYN3 (ENSCPBG00000023177) ENSCPBG00000023176 LARGE1 (ENSCPBG00000023171) HMGXB4 (ENSCPBG00000023163) TOM1 (ENSCPBG00000023159) HMOX1 (ENSCPBG00000023157) MCM5 (ENSCPBG00000023156) RASD2 (ENSCPBG00000023155) ENSCPBG00000023154 Testudinidae ANCESTRAL SPECIES 14 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT01100000264758 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000154936.qb ENSGT00940000158497 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Abingdon island giant tortoise MODERN SPECIES 2056 ABTB3 (ENSCABG00000021842) #22 PWP1 (ENSCABG00000021839) PRDM4 (ENSCABG00000021838) Goode s thornscrub tortoise MODERN SPECIES ENSGEVG00005017705 WASHC4 (ENSGEVG00005017801) APPL2 (ENSGEVG00005017944) ENSGEVG00005018013 ENSGEVG00005018041 NUAK1 (ENSGEVG00005018067) CKAP4 (ENSGEVG00005018087) TCP11L2 (ENSGEVG00005018167) POLR3B (ENSGEVG00005018259) RFX4 (ENSGEVG00005018513) RIC8B (ENSGEVG00005018776) ENSGEVG00005018816 TMEM263 (ENSGEVG00005018832) MTERF2 (ENSGEVG00005018849) #20 CRY1 (ENSGEVG00005018863) #21 ABTB3 (ENSGEVG00005018959) #22 PWP1 (ENSGEVG00005019049) PRDM4 (ENSGEVG00005019075) ASCL4 (ENSGEVG00005019133) RTCB (ENSGEVG00005019148) FBXO7 (ENSGEVG00005019168) SYN3 (ENSGEVG00005019192) TIMP3 (ENSGEVG00005019220) ENSGEVG00005019237 LARGE1 (ENSGEVG00005019256) ENSGEVG00005019308 HMGXB4 (ENSGEVG00005019321) TOM1 (ENSGEVG00005019332) HMOX1 (ENSGEVG00005019350) MCM5 (ENSGEVG00005019359) RASD2 (ENSGEVG00005019390) Chinese turtle MODERN SPECIES 2219 SLC41A2 (ENSPSIG00000016866) ENSPSIG00000016863 ENSPSIG00000016855 WASHC4 (ENSPSIG00000016709) APPL2 (ENSPSIG00000015948) NUAK1 (ENSPSIG00000015908) CKAP4 (ENSPSIG00000015904) TCP11L2 (ENSPSIG00000015900) POLR3B (ENSPSIG00000015650) RFX4 (ENSPSIG00000015178) RIC8B (ENSPSIG00000014745) ENSPSIG00000014676 TMEM263 (ENSPSIG00000014266) MTERF2 (ENSPSIG00000001391) #20 CRY1 (ENSPSIG00000014000) #21 ABTB3 (ENSPSIG00000013187) #22 PWP1 (ENSPSIG00000012219) PRDM4 (ENSPSIG00000012066) ASCL4 (ENSPSIG00000011827) RTCB (ENSPSIG00000011690) BPIFC (ENSPSIG00000011680) FBXO7 (ENSPSIG00000011604) TIMP3 (ENSPSIG00000011576) SYN3 (ENSPSIG00000010823) ENSPSIG00000010811 LARGE1 (ENSPSIG00000010563) ISX (ENSPSIG00000010536) ENSPSIG00000001386 HMGXB4 (ENSPSIG00000010351) TOM1 (ENSPSIG00000008886) HMOX1 (ENSPSIG00000008878) Archosauria ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Aves ANCESTRAL SPECIES 1 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Neognathae ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Neognathae_b ANCESTRAL SPECIES 2 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Passeriformes ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Passeriformes_d ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000155415.i ENSGT00940000159601 ENSGT00940000155415.j ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881.b ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Flycatcher MODERN SPECIES 10 TXNRD1 (ENSFALG00000013484) CHST11 (ENSFALG00000024760) SLC41A2 (ENSFALG00000013466) ALDH1L2 (ENSFALG00000013444) WASHC4 (ENSFALG00000013439) APPL2 (ENSFALG00000013435) NUAK1 (ENSFALG00000013432) CKAP4 (ENSFALG00000014637) TCP11L2 (ENSFALG00000013422) POLR3B (ENSFALG00000013416) RFX4 (ENSFALG00000013407) RIC8B (ENSFALG00000013403) TMEM263 (ENSFALG00000013401) MTERF2 (ENSFALG00000015234) #20 ENSFALG00000013385 #21 ABTB3 (ENSFALG00000013363) #22 PWP1 (ENSFALG00000028352) PRDM4 (ENSFALG00000013342) ASCL4 (ENSFALG00000013339) RTCB (ENSFALG00000013334) BPIFC (ENSFALG00000013313) FBXO7 (ENSFALG00000026531) TIMP3 (ENSFALG00000028031) ENSFALG00000026948 SYN3 (ENSFALG00000013273) LARGE1 (ENSFALG00000013252) ISX (ENSFALG00000013243) ENSFALG00000023952 ENSFALG00000028926 HMGXB4 (ENSFALG00000026744) TOM1 (ENSFALG00000013218) Passeriformes_g ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT00390000006670 ENSGT00940000155415.i ENSGT00940000159601 ENSGT00940000155415.j ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881.b ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Medium ground finch MODERN SPECIES 37 WASHC4 (ENSGFOG00000007891) APPL2 (ENSGFOG00000008038) ENSGFOG00000008059 NUAK1 (ENSGFOG00000008068) CKAP4 (ENSGFOG00000008077) TCP11L2 (ENSGFOG00000008087) POLR3B (ENSGFOG00000008095) RFX4 (ENSGFOG00000008112) RIC8B (ENSGFOG00000008155) TMEM263 (ENSGFOG00000008165) MTERF2 (ENSGFOG00000008170) #20 CRY1 (ENSGFOG00000008174) #21 ABTB3 (ENSGFOG00000008228) #22 PWP1 (ENSGFOG00000008313) PRDM4 (ENSGFOG00000008320) ASCL4 (ENSGFOG00000008341) RTCB (ENSGFOG00000008348) FBXO7 (ENSGFOG00000008396) SYN3 (ENSGFOG00000008404) TIMP3 (ENSGFOG00000008415) LARGE1 (ENSGFOG00000008423) ENSGFOG00000008429 HMGXB4 (ENSGFOG00000008435) TOM1 (ENSGFOG00000008440) HMOX1 (ENSGFOG00000008447) MCM5 (ENSGFOG00000008457) RASD2 (ENSGFOG00000008464) MB (ENSGFOG00000008467) Passeroidea ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT00390000006670 ENSGT00940000155415.i ENSGT00940000159601 ENSGT00940000155415.j ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881.b ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Zebra finch MODERN SPECIES 11 SLC41A2 (ENSTGUG00000011125) ENSTGUG00000011119 ALDH1L2 (ENSTGUG00000011095) WASHC4 (ENSTGUG00000011083) APPL2 (ENSTGUG00000011070) ENSTGUG00000024437 NUAK1 (ENSTGUG00000029187) CKAP4 (ENSTGUG00000011066) TCP11L2 (ENSTGUG00000011052) POLR3B (ENSTGUG00000011035) RFX4 (ENSTGUG00000011025) RIC8B (ENSTGUG00000011019) TMEM263 (ENSTGUG00000024862) MTERF2 (ENSTGUG00000011016) #20 CRY1 (ENSTGUG00000010999) #21 ABTB3 (ENSTGUG00000010981) #22 PWP1 (ENSTGUG00000010969) PRDM4 (ENSTGUG00000010962) ASCL4 (ENSTGUG00000019350) RTCB (ENSTGUG00000010947) ENSTGUG00000010918 FBXO7 (ENSTGUG00000010909) TIMP3 (ENSTGUG00000026320) SYN3 (ENSTGUG00000028010) LARGE1 (ENSTGUG00000010873) ISX (ENSTGUG00000010871) ENSTGUG00000010863 HMGXB4 (ENSTGUG00000028862) TOM1 (ENSTGUG00000010846) HMOX1 (ENSTGUG00000010842) MCM5 (ENSTGUG00000010831) Common canary MODERN SPECIES 6 SLC41A2 (ENSSCAG00000002959) ENSSCAG00000002965 ALDH1L2 (ENSSCAG00000002993) WASHC4 (ENSSCAG00000003035) APPL2 (ENSSCAG00000003242) ENSSCAG00000003250 NUAK1 (ENSSCAG00000003259) CKAP4 (ENSSCAG00000003264) TCP11L2 (ENSSCAG00000003267) POLR3B (ENSSCAG00000003277) RFX4 (ENSSCAG00000003296) RIC8B (ENSSCAG00000003336) TMEM263 (ENSSCAG00000003349) MTERF2 (ENSSCAG00000003358) #20 CRY1 (ENSSCAG00000003375) #21 ABTB3 (ENSSCAG00000003527) #22 PWP1 (ENSSCAG00000003873) PRDM4 (ENSSCAG00000003888) RTCB (ENSSCAG00000003897) FBXO7 (ENSSCAG00000003913) ENSSCAG00000003928 TIMP3 (ENSSCAG00000003936) ENSSCAG00000003941 LARGE1 (ENSSCAG00000003947) ENSSCAG00000003961 ENSSCAG00000003966 HMGXB4 (ENSSCAG00000003974) TOM1 (ENSSCAG00000003990) HMOX1 (ENSSCAG00000004008) MCM5 (ENSSCAG00000004011) RASD2 (ENSSCAG00000004019) Great tit MODERN SPECIES 10 SLC41A2 (ENSPMJG00000008775) ENSPMJG00000008760 ALDH1L2 (ENSPMJG00000008748) WASHC4 (ENSPMJG00000008747) APPL2 (ENSPMJG00000008743) ENSPMJG00000008742 NUAK1 (ENSPMJG00000008722) CKAP4 (ENSPMJG00000008721) TCP11L2 (ENSPMJG00000008715) POLR3B (ENSPMJG00000008714) RFX4 (ENSPMJG00000008713) RIC8B (ENSPMJG00000008694) TMEM263 (ENSPMJG00000008693) MTERF2 (ENSPMJG00000008692) #20 CRY1 (ENSPMJG00000008449) #21 ABTB3 (ENSPMJG00000008407) #22 ENSPMJG00000008405 ENSPMJG00000008403 PRDM4 (ENSPMJG00000008399) ASCL4 (ENSPMJG00000008398) RTCB (ENSPMJG00000008395) BPIFC (ENSPMJG00000008393) FBXO7 (ENSPMJG00000008333) TIMP3 (ENSPMJG00000008331) SYN3 (ENSPMJG00000008326) LARGE1 (ENSPMJG00000008279) ISX (ENSPMJG00000008246) ENSPMJG00000008168 HMGXB4 (ENSPMJG00000008166) TOM1 (ENSPMJG00000008159) HMOX1 (ENSPMJG00000008156) Neognathae_c ANCESTRAL SPECIES ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Golden eagle MODERN SPECIES 8 SLC41A2 (ENSACCG00020007406) ENSACCG00020007389 ALDH1L2 (ENSACCG00020007369) WASHC4 (ENSACCG00020007344) APPL2 (ENSACCG00020007314) ENSACCG00020007299 NUAK1 (ENSACCG00020007283) CKAP4 (ENSACCG00020007272) TCP11L2 (ENSACCG00020007256) POLR3B (ENSACCG00020007225) RFX4 (ENSACCG00020007189) RIC8B (ENSACCG00020007166) TMEM263 (ENSACCG00020007155) MTERF2 (ENSACCG00020007149) #20 CRY1 (ENSACCG00020007130) #21 ABTB3 (ENSACCG00020006998) #22 PWP1 (ENSACCG00020006833) PRDM4 (ENSACCG00020006770) ASCL4 (ENSACCG00020006751) RTCB (ENSACCG00020006741) BPIFC (ENSACCG00020006720) FBXO7 (ENSACCG00020006706) TIMP3 (ENSACCG00020006697) SYN3 (ENSACCG00020006681) LARGE1 (ENSACCG00020006660) ENSACCG00020006637 HMGXB4 (ENSACCG00020006629) TOM1 (ENSACCG00020006595) HMOX1 (ENSACCG00020006576) MCM5 (ENSACCG00020006548) RASD2 (ENSACCG00020006526) Kakapo MODERN SPECIES 20 CHST11 (ENSSHBG00005015614) SLC41A2 (ENSSHBG00005015628) ENSSHBG00005015638 ALDH1L2 (ENSSHBG00005015655) WASHC4 (ENSSHBG00005015701) APPL2 (ENSSHBG00005015763) NUAK1 (ENSSHBG00005015779) CKAP4 (ENSSHBG00005015786) TCP11L2 (ENSSHBG00005015792) POLR3B (ENSSHBG00005000140) RFX4 (ENSSHBG00005000172) RIC8B (ENSSHBG00005001543) TMEM263 (ENSSHBG00005001561) MTERF2 (ENSSHBG00005001597) #20 CRY1 (ENSSHBG00005001648) #21 ABTB3 (ENSSHBG00005001765) #22 PWP1 (ENSSHBG00005001839) PRDM4 (ENSSHBG00005001862) ASCL4 (ENSSHBG00005001890) RTCB (ENSSHBG00005001907) LARGE1 (ENSSHBG00005001933) SYN3 (ENSSHBG00005001973) TIMP3 (ENSSHBG00005002003) ENSSHBG00005002017 FBXO7 (ENSSHBG00005002035) NPFFR2 (ENSSHBG00005002069) HMGXB4 (ENSSHBG00005002083) TOM1 (ENSSHBG00005002109) HMOX1 (ENSSHBG00005002149) MCM5 (ENSSHBG00005002173) RASD2 (ENSSHBG00005002211) Galloanserae ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Anatidae ANCESTRAL SPECIES 8 ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00960000189296 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Pink-footed goose MODERN SPECIES 58 SLC41A2 (ENSABRG00000004934) ENSABRG00000004923 ALDH1L2 (ENSABRG00000004880) WASHC4 (ENSABRG00000004831) APPL2 (ENSABRG00000004805) ENSABRG00000004799 NUAK1 (ENSABRG00000004776) CKAP4 (ENSABRG00000004760) TCP11L2 (ENSABRG00000004743) POLR3B (ENSABRG00000004704) RFX4 (ENSABRG00000004518) RIC8B (ENSABRG00000004471) TMEM263 (ENSABRG00000004443) MTERF2 (ENSABRG00000004431) #20 CRY1 (ENSABRG00000004417) #21 ABTB3 (ENSABRG00000004377) #22 PWP1 (ENSABRG00000004331) PRDM4 (ENSABRG00000004303) ASCL4 (ENSABRG00000004292) RTCB (ENSABRG00000004282) BPIFC (ENSABRG00000004274) FBXO7 (ENSABRG00000004259) ENSABRG00000004253 TIMP3 (ENSABRG00000004248) SYN3 (ENSABRG00000003725) LARGE1 (ENSABRG00000003625) ISX (ENSABRG00000003574) HMGXB4 (ENSABRG00000003392) TOM1 (ENSABRG00000003370) HMOX1 (ENSABRG00000003342) ENSABRG00000003332 Duck MODERN SPECIES SLC41A2 (ENSAPLG00000008013) ENSAPLG00000008125 ALDH1L2 (ENSAPLG00000008126) WASHC4 (ENSAPLG00000015019) APPL2 (ENSAPLG00000015124) ENSAPLG00000025513 NUAK1 (ENSAPLG00000017168) CKAP4 (ENSAPLG00000000701) TCP11L2 (ENSAPLG00000002388) POLR3B (ENSAPLG00000005305) RFX4 (ENSAPLG00000005849) RIC8B (ENSAPLG00000008075) ENSAPLG00000016936 MTERF2 (ENSAPLG00000001889) #20 CRY1 (ENSAPLG00000008378) #21 ABTB3 (ENSAPLG00000009119) #22 PWP1 (ENSAPLG00000009587) PRDM4 (ENSAPLG00000009846) ASCL4 (ENSAPLG00000010091) RTCB (ENSAPLG00000008226) BPIFC (ENSAPLG00000010092) FBXO7 (ENSAPLG00000010521) TIMP3 (ENSAPLG00000023484) SYN3 (ENSAPLG00000010781) LARGE1 (ENSAPLG00000008894) ISX (ENSAPLG00000008806) HMGXB4 (ENSAPLG00000008799) TOM1 (ENSAPLG00000008336) HMOX1 (ENSAPLG00000008265) MCM5 (ENSAPLG00000007931) RASD2 (ENSAPLG00000007921) Phasianidae ANCESTRAL SPECIES ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Phasianidae_b ANCESTRAL SPECIES ENSGT00950000183042.a.b ENSGT00940000165155 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a.b ENSGT01100000263545.a.b.c.a.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Chicken MODERN SPECIES SLC41A2 (ENSGALG00010011671) ENSGALG00010011660 ALDH1L2 (ENSGALG00010011657) WASHC4 (ENSGALG00010011621) APPL2 (ENSGALG00010011605) C12orf75 (ENSGALG00010010666) NUAK1 (ENSGALG00010010651) CKAP4 (ENSGALG00010011936) TCP11X2 (ENSGALG00010011912) POLR3B (ENSGALG00010011025) RFX4 (ENSGALG00010010996) RIC8B (ENSGALG00010010981) TMEM263 (ENSGALG00010010959) MTERF2 (ENSGALG00010010954) #20 CRY1 (ENSGALG00010011282) #21 ABTB3 (ENSGALG00010015635) #22 PWP1 (ENSGALG00010015613) PRDM4 (ENSGALG00010015583) ASCL4 (ENSGALG00010015553) RTCB (ENSGALG00010015544) BPIFCB (ENSGALG00010015515) ENSGALG00010015496 FBXO7 (ENSGALG00010015478) TIMP3 (ENSGALG00010015407) SYN3 (ENSGALG00010015391) ENSGALG00010015339 LARGE1 (ENSGALG00010015327) ISX (ENSGALG00010015257) HMGXB4 (ENSGALG00010015203) TOM1 (ENSGALG00010015191) HMOX1 (ENSGALG00010015155) Turkey MODERN SPECIES ENSMGAG00000013250 ENSMGAG00000017620 ENSMGAG00000019460 ENSMGAG00000012768 TIMP3 (ENSMGAG00000012775) ENSMGAG00000022100 ENSMGAG00000012781 ENSMGAG00000012777 ENSMGAG00000021425 ENSMGAG00000012805 ENSMGAG00000017736 ASCL4 (ENSMGAG00000012814) ENSMGAG00000019062 ENSMGAG00000012823 ENSMGAG00000012815 ENSMGAG00000012838 #22 ENSMGAG00000012848 #21 ENSMGAG00000012857 ENSMGAG00000015962 #20 ENSMGAG00000012859 RFX4 (ENSMGAG00000012867) ENSMGAG00000012885 ENSMGAG00000012873 ENSMGAG00000012894 ENSMGAG00000022592 ENSMGAG00000012895 ENSMGAG00000012947 ALDH1L2 (ENSMGAG00000012924) ENSMGAG00000012954 ENSMGAG00000012949 ENSMGAG00000018499 Japanese quail MODERN SPECIES ENSCJPG00005018296 ALDH1L2 (ENSCJPG00005018295) WASHC4 (ENSCJPG00005018294) APPL2 (ENSCJPG00005018293) ENSCJPG00005018292 ENSCJPG00005018290 NUAK1 (ENSCJPG00005018289) CKAP4 (ENSCJPG00005018288) TCP11L2 (ENSCJPG00005018287) POLR3B (ENSCJPG00005018285) RFX4 (ENSCJPG00005018283) RIC8B (ENSCJPG00005018281) TMEM263 (ENSCJPG00005018279) MTERF2 (ENSCJPG00005018278) #20 CRY1 (ENSCJPG00005018276) #21 ABTB3 (ENSCJPG00005018274) #22 PWP1 (ENSCJPG00005018198) PRDM4 (ENSCJPG00005018196) ASCL4 (ENSCJPG00005018194) RTCB (ENSCJPG00005018192) BPIFC (ENSCJPG00005018190) FBXO7 (ENSCJPG00005018189) TIMP3 (ENSCJPG00005018188) SYN3 (ENSCJPG00005018187) LARGE1 (ENSCJPG00005018186) ISX (ENSCJPG00005018181) HMGXB4 (ENSCJPG00005018179) TOM1 (ENSCJPG00005018178) HMOX1 (ENSCJPG00005018177) MCM5 (ENSCJPG00005018176) RASD2 (ENSCJPG00005018174) African ostrich MODERN SPECIES 945 RIC8B (ENSSCUG00000017000) TMEM263 (ENSSCUG00000016997) MTERF2 (ENSSCUG00000016996) #20 CRY1 (ENSSCUG00000016995) #21 ABTB3 (ENSSCUG00000016992) #22 PWP1 (ENSSCUG00000016991) PRDM4 (ENSSCUG00000016989) ASCL4 (ENSSCUG00000016988) RTCB (ENSSCUG00000016980) ENSSCUG00000016975 ENSSCUG00000016973 FBXO7 (ENSSCUG00000016972) TIMP3 (ENSSCUG00000016971) SYN3 (ENSSCUG00000016968) LARGE1 (ENSSCUG00000016962) ENSSCUG00000016958 HMGXB4 (ENSSCUG00000016956) TOM1 (ENSSCUG00000016953) HMOX1 (ENSSCUG00000016949) MCM5 (ENSSCUG00000016946) Australian saltwater crocodile MODERN SPECIES 49 SLC41A2 (ENSCPRG00005018310) ENSCPRG00005018311 ALDH1L2 (ENSCPRG00005018375) WASHC4 (ENSCPRG00005018454) APPL2 (ENSCPRG00005018457) C12orf75 (ENSCPRG00005018458) NUAK1 (ENSCPRG00005018462) CKAP4 (ENSCPRG00005018463) TCP11L2 (ENSCPRG00005018465) POLR3B (ENSCPRG00005018476) RFX4 (ENSCPRG00005018485) RIC8B (ENSCPRG00005018503) TMEM263 (ENSCPRG00005018519) CRY1 (ENSCPRG00005018525) #21 MTERF2 (ENSCPRG00005018531) #20 ABTB3 (ENSCPRG00005018541) #22 PWP1 (ENSCPRG00005018573) PRDM4 (ENSCPRG00005018580) ASCL4 (ENSCPRG00005018582) RTCB (ENSCPRG00005018583) ENSCPRG00005018586 ENSCPRG00005018588 FBXO7 (ENSCPRG00005018590) SYN3 (ENSCPRG00005018596) TIMP3 (ENSCPRG00005018605) ENSCPRG00005018608 LARGE1 (ENSCPRG00005018610) ENSCPRG00005018618 HMGXB4 (ENSCPRG00005018629) TOM1 (ENSCPRG00005018632) HMOX1 (ENSCPRG00005018634) Mammalia ANCESTRAL SPECIES 8 ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Theria ANCESTRAL SPECIES 2 ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Eutheria ANCESTRAL SPECIES 1 ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Boreoeutheria ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 Euarchontoglires ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 Primates ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Haplorrhini ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Tarsier MODERN SPECIES 6412 ENSTSYG00000032231 ABTB3 (ENSTSYG00000014668) #22 Simiiformes ANCESTRAL SPECIES 4 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00760000120430 ENSGT00940000163408 ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 Platyrrhini ANCESTRAL SPECIES 6 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00710000106769.z.b ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.m ENSGT00940000156443 ENSGT00940000163408 ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Cebidae ANCESTRAL SPECIES 2 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.m ENSGT00940000156443 ENSGT00940000163408 ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a ENSGT00550000075075 Cebidae_a ANCESTRAL SPECIES 8 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT00390000007135.d ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.m ENSGT00940000156443 ENSGT00940000163408 ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a ENSGT00550000075075 ENSGT00940000159009 Bolivian squirrel monkey MODERN SPECIES 90 ABTB3 (ENSSBOG00000032844) #22 PWP1 (ENSSBOG00000026285) PRDM4 (ENSSBOG00000000403) ENSSBOG00000029323 ENSSBOG00000025214 WSCD2 (ENSSBOG00000024626) CMKLR1 (ENSSBOG00000030650) FICD (ENSSBOG00000034532) SART3 (ENSSBOG00000033093) ISCU (ENSSBOG00000021034) SELPLG (ENSSBOG00000021697) CORO1C (ENSSBOG00000022606) SSH1 (ENSSBOG00000036026) DAO (ENSSBOG00000019648) SVOP (ENSSBOG00000030817) USP30 (ENSSBOG00000020721) Capuchin MODERN SPECIES 8 NOPCHAP1 (ENSCCAG00000038061) ALDH1L2 (ENSCCAG00000020572) WASHC4 (ENSCCAG00000034148) APPL2 (ENSCCAG00000038116) C12orf75 (ENSCCAG00000035327) NUAK1 (ENSCCAG00000032382) CKAP4 (ENSCCAG00000015529) ENSCCAG00000013724 TCP11L2 (ENSCCAG00000031162) POLR3B (ENSCCAG00000029080) ENSCCAG00000026770 RFX4 (ENSCCAG00000020317) RIC8B (ENSCCAG00000034797) TMEM263 (ENSCCAG00000024297) CRY1 (ENSCCAG00000030131) #21 BTBD11 (ENSCCAG00000020783) #22 PWP1 (ENSCCAG00000021769) PRDM4 (ENSCCAG00000036033) WSCD2 (ENSCCAG00000028647) CMKLR1 (ENSCCAG00000034028) FICD (ENSCCAG00000019637) SART3 (ENSCCAG00000023667) ISCU (ENSCCAG00000037188) SELPLG (ENSCCAG00000024315) CORO1C (ENSCCAG00000020867) SSH1 (ENSCCAG00000026307) DAO (ENSCCAG00000014694) SVOP (ENSCCAG00000036126) USP30 (ENSCCAG00000025760) ALKBH2 (ENSCCAG00000020322) UNG (ENSCCAG00000029467) Marmoset MODERN SPECIES 21 WASHC4 (ENSCJAG00000014770) ENSCJAG00000087187 APPL2 (ENSCJAG00000014883) C12orf75 (ENSCJAG00000085241) ENSCJAG00000069794 NUAK1 (ENSCJAG00000080048) CKAP4 (ENSCJAG00000065358) TCP11L2 (ENSCJAG00000014977) POLR3B (ENSCJAG00000014985) ENSCJAG00000087108 RFX4 (ENSCJAG00000015034) RIC8B (ENSCJAG00000015061) TMEM263 (ENSCJAG00000086624) MTERF2 (ENSCJAG00000015094) #20 CRY1 (ENSCJAG00000015099) #21 ABTB3 (ENSCJAG00000015118) #22 PRDM4 (ENSCJAG00000015261) ENSCJAG00000073798 ENSCJAG00000015306 WSCD2 (ENSCJAG00000015311) CMKLR1 (ENSCJAG00000015320) FICD (ENSCJAG00000015326) SART3 (ENSCJAG00000015330) ENSCJAG00000015374 TMEM119 (ENSCJAG00000086609) SELPLG (ENSCJAG00000074914) CORO1C (ENSCJAG00000015412) SSH1 (ENSCJAG00000015460) DAO (ENSCJAG00000015484) SVOP (ENSCJAG00000015499) USP30 (ENSCJAG00000010157) Mas night monkey MODERN SPECIES 844 ALDH1L2 (ENSANAG00000029853) WASHC4 (ENSANAG00000036953) APPL2 (ENSANAG00000034797) C12orf75 (ENSANAG00000033802) NUAK1 (ENSANAG00000034880) ENSANAG00000032925 CKAP4 (ENSANAG00000025249) TCP11L2 (ENSANAG00000034285) ENSANAG00000028632 POLR3B (ENSANAG00000036735) RFX4 (ENSANAG00000035419) RIC8B (ENSANAG00000032292) ENSANAG00000026743 TMEM263 (ENSANAG00000033424) CRY1 (ENSANAG00000024975) #21 ABTB3 (ENSANAG00000029978) #22 PWP1 (ENSANAG00000013828) ENSANAG00000028362 PRDM4 (ENSANAG00000024800) ENSANAG00000029725 WSCD2 (ENSANAG00000024935) ENSANAG00000032844 CMKLR1 (ENSANAG00000028941) FICD (ENSANAG00000026246) SART3 (ENSANAG00000025967) ISCU (ENSANAG00000026058) CORO1C (ENSANAG00000008373) SSH1 (ENSANAG00000022027) DAO (ENSANAG00000022080) SVOP (ENSANAG00000019294) USP30 (ENSANAG00000020712) Catarrhini ANCESTRAL SPECIES 4 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000163408.b ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d Cercopithecidae ANCESTRAL SPECIES 3 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000163408.b ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT01000000216272 Cercopithecinae ANCESTRAL SPECIES 7 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00910000145584 ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000163408.b ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT01000000216272 Vervet Monkey MODERN SPECIES 2 WASHC4 (ENSCSAG00000002978) APPL2 (ENSCSAG00000002970) C12orf75 (ENSCSAG00000002966) ENSCSAG00000002964 NUAK1 (ENSCSAG00000002962) CKAP4 (ENSCSAG00000002960) TCP11L2 (ENSCSAG00000002959) POLR3B (ENSCSAG00000002957) RFX4 (ENSCSAG00000002952) RIC8B (ENSCSAG00000002947) ENSCSAG00000018940 ENSCSAG00000002943 TMEM263 (ENSCSAG00000002931) MTERF2 (ENSCSAG00000018941) #20 CRY1 (ENSCSAG00000002927) #21 ABTB3 (ENSCSAG00000002923) #22 PWP1 (ENSCSAG00000002914) PRDM4 (ENSCSAG00000002896) ASCL4 (ENSCSAG00000018942) ENSCSAG00000002890 WSCD2 (ENSCSAG00000002888) CMKLR1 (ENSCSAG00000002884) FICD (ENSCSAG00000002883) SART3 (ENSCSAG00000002880) ISCU (ENSCSAG00000002876) TMEM119 (ENSCSAG00000018943) SELPLG (ENSCSAG00000002872) CORO1C (ENSCSAG00000002869) DAO (ENSCSAG00000002864) SVOP (ENSCSAG00000002859) USP30 (ENSCSAG00000002855) Cercopithecinae_a ANCESTRAL SPECIES 7 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT01030000234551.k.d.a.d.a.a.b ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000163408.b ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT01000000216272 Macaca ANCESTRAL SPECIES 6 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT01030000234551.k.d.a.d.a.a.b ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000163408.b ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Pig-tailed macaque MODERN SPECIES 260 WASHC4 (ENSMNEG00000030404) APPL2 (ENSMNEG00000039763) C12orf75 (ENSMNEG00000027979) NUAK1 (ENSMNEG00000036867) ENSMNEG00000040834 CKAP4 (ENSMNEG00000029015) TCP11L2 (ENSMNEG00000044893) POLR3B (ENSMNEG00000044393) ENSMNEG00000041249 RFX4 (ENSMNEG00000030538) RIC8B (ENSMNEG00000038905) ENSMNEG00000034499 TMEM263 (ENSMNEG00000040080) MTERF2 (ENSMNEG00000000672) #20 CRY1 (ENSMNEG00000042763) #21 ABTB3 (ENSMNEG00000033166) #22 ENSMNEG00000043771 PRDM4 (ENSMNEG00000032319) WSCD2 (ENSMNEG00000013314) Macaca_a ANCESTRAL SPECIES 6 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT01030000234551.k.d.a.d.a.a.b ENSGT00940000157255 ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.b.a.b.b.b.b.a.a.b.a ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000164709.a.b.b.a.b.b.b.a.a.b ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000163408.b ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Rhesus MODERN SPECIES 2 ENSMMUG00000046424 ENSMMUG00000060382 ENSMMUG00000001136 NUAK1 (ENSMMUG00000020951) ENSMMUG00000061475 CKAP4 (ENSMMUG00000055446) ENSMMUG00000051855 TCP11L2 (ENSMMUG00000003711) POLR3B (ENSMMUG00000005208) RFX4 (ENSMMUG00000022118) RIC8B (ENSMMUG00000009236) TMEM263 (ENSMMUG00000051588) MTERF2 (ENSMMUG00000022278) #20 CRY1 (ENSMMUG00000021808) #21 ENSMMUG00000058429 BTBD11 (ENSMMUG00000015540) #22 PWP1 (ENSMMUG00000015544) PRDM4 (ENSMMUG00000015550) ASCL4 (ENSMMUG00000064376) ENSMMUG00000021049 WSCD2 (ENSMMUG00000019042) CMKLR1 (ENSMMUG00000042320) FICD (ENSMMUG00000017123) SART3 (ENSMMUG00000017124) ISCU (ENSMMUG00000017126) TMEM119 (ENSMMUG00000050754) SELPLG (ENSMMUG00000031572) CORO1C (ENSMMUG00000000512) SSH1 (ENSMMUG00000015107) DAO (ENSMMUG00000006893) SVOP (ENSMMUG00000015108) Crab-eating macaque MODERN SPECIES 2 APPL2 (ENSMFAG00000043698) ENSMFAG00000049727 KLK13 (ENSMFAG00000042780) NUAK1 (ENSMFAG00000000816) ENSMFAG00000065790 CKAP4 (ENSMFAG00000036560) TCP11L2 (ENSMFAG00000042033) POLR3B (ENSMFAG00000038425) ENSMFAG00000062359 RIC8B (ENSMFAG00000002768) ENSMFAG00000003979 ENSMFAG00000041360 MTERF2 (ENSMFAG00000029443) #20 CRY1 (ENSMFAG00000041111) #21 ENSMFAG00000047603 ABTB3 (ENSMFAG00000030643) #22 PWP1 (ENSMFAG00000036367) PRDM4 (ENSMFAG00000041862) ENSMFAG00000048745 WSCD2 (ENSMFAG00000042790) CMKLR1 (ENSMFAG00000014872) ENSMFAG00000054405 FICD (ENSMFAG00000037681) SART3 (ENSMFAG00000039887) ISCU (ENSMFAG00000045386) CORO1C (ENSMFAG00000044006) TMEM119 (ENSMFAG00000063201) SELPLG (ENSMFAG00000030190) SSH1 (ENSMFAG00000002904) DAO (ENSMFAG00000000854) SVOP (ENSMFAG00000033712) Cercopithecinae_b ANCESTRAL SPECIES 2 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT01030000234551.k.d.a.d.a.a.b ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000163408.b ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT01000000216272 Olive baboon MODERN SPECIES 19 WASHC4 (ENSPANG00000006617) APPL2 (ENSPANG00000012253) C12orf75 (ENSPANG00000033836) ENSPANG00000041805 NUAK1 (ENSPANG00000051069) CKAP4 (ENSPANG00000026469) TCP11L2 (ENSPANG00000041306) POLR3B (ENSPANG00000012252) RFX4 (ENSPANG00000006357) RIC8B (ENSPANG00000003388) ENSPANG00000009390 ENSPANG00000048626 ENSPANG00000038560 MTERF2 (ENSPANG00000006958) #20 CRY1 (ENSPANG00000026255) #21 ABTB3 (ENSPANG00000005795) #22 PWP1 (ENSPANG00000004645) PRDM4 (ENSPANG00000022084) ASCL4 (ENSPANG00000043496) ENSPANG00000046253 WSCD2 (ENSPANG00000016135) CMKLR1 (ENSPANG00000012188) FICD (ENSPANG00000025435) SART3 (ENSPANG00000024915) ISCU (ENSPANG00000026468) TMEM119 (ENSPANG00000008243) ENSPANG00000018235 SSH1 (ENSPANG00000016134) DAO (ENSPANG00000006127) SVOP (ENSPANG00000018234) USP30 (ENSPANG00000006076) Cercopithecinae_d ANCESTRAL SPECIES 5 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT01030000234551.k.d.a.d.a.a.b ENSGT00940000157255 ENSGT00710000106769.z ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT01000000216272 ENSGT00940000155403.a ENSGT00550000075075 Sooty mangabey MODERN SPECIES 406 ALDH1L2 (ENSCATG00000016973) WASHC4 (ENSCATG00000038821) APPL2 (ENSCATG00000039966) C12orf75 (ENSCATG00000040575) NUAK1 (ENSCATG00000040119) ENSCATG00000038505 CKAP4 (ENSCATG00000013361) TCP11L2 (ENSCATG00000029405) POLR3B (ENSCATG00000035334) RFX4 (ENSCATG00000034974) RIC8B (ENSCATG00000034699) TMEM263 (ENSCATG00000045155) MTERF2 (ENSCATG00000019407) #20 ENSCATG00000025178 CRY1 (ENSCATG00000036896) #21 ABTB3 (ENSCATG00000039876) #22 ENSCATG00000032473 PRDM4 (ENSCATG00000044797) ENSCATG00000044049 WSCD2 (ENSCATG00000032610) CMKLR1 (ENSCATG00000032817) FICD (ENSCATG00000013696) SART3 (ENSCATG00000041537) ISCU (ENSCATG00000044115) TMEM119 (ENSCATG00000019459) SELPLG (ENSCATG00000042640) CORO1C (ENSCATG00000000746) SSH1 (ENSCATG00000035968) DAO (ENSCATG00000032605) ENSCATG00000019209 SVOP (ENSCATG00000036553) Drill MODERN SPECIES 529 NOPCHAP1 (ENSMLEG00000039234) ALDH1L2 (ENSMLEG00000039184) WASHC4 (ENSMLEG00000037120) APPL2 (ENSMLEG00000030321) C12orf75 (ENSMLEG00000033446) ENSMLEG00000004567 NUAK1 (ENSMLEG00000040273) TCP11L2 (ENSMLEG00000041194) POLR3B (ENSMLEG00000029122) RFX4 (ENSMLEG00000040115) RIC8B (ENSMLEG00000037876) ENSMLEG00000031724 TMEM263 (ENSMLEG00000038117) MTERF2 (ENSMLEG00000002757) #20 CRY1 (ENSMLEG00000038193) #21 ABTB3 (ENSMLEG00000038248) #22 ENSMLEG00000037152 PRDM4 (ENSMLEG00000039607) WSCD2 (ENSMLEG00000038501) CMKLR1 (ENSMLEG00000042436) FICD (ENSMLEG00000038334) SART3 (ENSMLEG00000034251) ENSMLEG00000029327 SELPLG (ENSMLEG00000011763) CORO1C (ENSMLEG00000043069) SSH1 (ENSMLEG00000038195) DAO (ENSMLEG00000035856) ENSMLEG00000024457 SVOP (ENSMLEG00000015028) USP30 (ENSMLEG00000031123) ALKBH2 (ENSMLEG00000014738) Rhinopithecus ANCESTRAL SPECIES 115 ENSGT00390000003682.jb ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324.k ENSGT00940000156443 ENSGT00940000159434 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT01000000216272 ENSGT00940000155403.a ENSGT00550000075075 ENSGT00940000159009 Black snub-nosed monkey MODERN SPECIES 903 RFX4 (ENSRBIG00000039278) ENSRBIG00000025373 RIC8B (ENSRBIG00000044148) ENSRBIG00000032567 TMEM263 (ENSRBIG00000031019) MTERF2 (ENSRBIG00000013724) #20 CRY1 (ENSRBIG00000034749) #21 ABTB3 (ENSRBIG00000029498) #22 ENSRBIG00000035006 PRDM4 (ENSRBIG00000035488) Golden snub-nosed monkey MODERN SPECIES 1852 ABTB3 (ENSRROG00000039165) #22 Hominoidea ANCESTRAL SPECIES 5 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00910000145584 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Gibbon MODERN SPECIES SLC41A2 (ENSNLEG00000006583) NOPCHAP1 (ENSNLEG00000006584) ALDH1L2 (ENSNLEG00000006586) WASHC4 (ENSNLEG00000006603) APPL2 (ENSNLEG00000006629) ENSNLEG00000033428 NUAK1 (ENSNLEG00000027950) ENSNLEG00000018772 TCP11L2 (ENSNLEG00000006650) POLR3B (ENSNLEG00000006659) RFX4 (ENSNLEG00000006695) RIC8B (ENSNLEG00000006717) TMEM263 (ENSNLEG00000006718) MTERF2 (ENSNLEG00000006719) #20 CRY1 (ENSNLEG00000006721) #21 ENSNLEG00000032890 #22 PWP1 (ENSNLEG00000006729) PRDM4 (ENSNLEG00000006748) ENSNLEG00000006751 WSCD2 (ENSNLEG00000031611) CMKLR1 (ENSNLEG00000006762) FICD (ENSNLEG00000006765) SART3 (ENSNLEG00000006767) ISCU (ENSNLEG00000006797) SELPLG (ENSNLEG00000006802) CORO1C (ENSNLEG00000006804) SSH1 (ENSNLEG00000006811) DAO (ENSNLEG00000006814) SVOP (ENSNLEG00000006817) USP30 (ENSNLEG00000001385) ALKBH2 (ENSNLEG00000028158) Hominidae ANCESTRAL SPECIES 4 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00910000145584 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Orangutan MODERN SPECIES 3 ENSPPYG00000004897 ALDH1L2 (ENSPPYG00000004898) WASHC4 (ENSPPYG00000004899) APPL2 (ENSPPYG00000004900) ENSPPYG00000004901 NUAK1 (ENSPPYG00000004902) CKAP4 (ENSPPYG00000004903) TCP11L2 (ENSPPYG00000004904) POLR3B (ENSPPYG00000004905) RFX4 (ENSPPYG00000004906) RIC8B (ENSPPYG00000004907) ENSPPYG00000004908 ENSPPYG00000039866 MTERF2 (ENSPPYG00000004910) #20 CRY1 (ENSPPYG00000004911) #21 ABTB3 (ENSPPYG00000004912) #22 PWP1 (ENSPPYG00000029435) PRDM4 (ENSPPYG00000004913) ENSPPYG00000004915 WSCD2 (ENSPPYG00000004916) CMKLR1 (ENSPPYG00000004917) FICD (ENSPPYG00000038791) SART3 (ENSPPYG00000004919) ISCU (ENSPPYG00000004920) TMEM119 (ENSPPYG00000004921) ENSPPYG00000004922 CORO1C (ENSPPYG00000004923) SSH1 (ENSPPYG00000004924) DAO (ENSPPYG00000004925) SVOP (ENSPPYG00000041286) USP30 (ENSPPYG00000004927) Homo/Pan/Gorilla group ANCESTRAL SPECIES 5 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00910000145584 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Gorilla MODERN SPECIES 3 ALDH1L2 (ENSGGOG00000011316) WASHC4 (ENSGGOG00000023259) APPL2 (ENSGGOG00000013151) ENSGGOG00000038455 ENSGGOG00000039595 ENSGGOG00000042762 NUAK1 (ENSGGOG00000010793) CKAP4 (ENSGGOG00000001789) TCP11L2 (ENSGGOG00000001958) POLR3B (ENSGGOG00000016608) RFX4 (ENSGGOG00000007759) RIC8B (ENSGGOG00000014949) TMEM263 (ENSGGOG00000013000) MTERF2 (ENSGGOG00000025492) #20 CRY1 (ENSGGOG00000027205) #21 ABTB3 (ENSGGOG00000006683) #22 ENSGGOG00000006700 PRDM4 (ENSGGOG00000001244) ASCL4 (ENSGGOG00000025905) WSCD2 (ENSGGOG00000010116) CMKLR1 (ENSGGOG00000010125) FICD (ENSGGOG00000011553) SART3 (ENSGGOG00000011562) ENSGGOG00000011579 TMEM119 (ENSGGOG00000026534) SELPLG (ENSGGOG00000011384) CORO1C (ENSGGOG00000017112) SSH1 (ENSGGOG00000000979) DAO (ENSGGOG00000013247) ENSGGOG00000014918 USP30 (ENSGGOG00000009612) Homo/Pan group ANCESTRAL SPECIES 6 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00910000145584 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Human MODERN SPECIES 3 SLC41A2 (ENSG00000136052) NOPCHAP1 (ENSG00000151131) ALDH1L2 (ENSG00000136010) WASHC4 (ENSG00000136051) APPL2 (ENSG00000136044) C12orf75 (ENSG00000235162) NUAK1 (ENSG00000074590) CKAP4 (ENSG00000136026) TCP11L2 (ENSG00000166046) POLR3B (ENSG00000013503) RFX4 (ENSG00000111783) RIC8B (ENSG00000111785) TMEM263 (ENSG00000151135) MTERF2 (ENSG00000120832) #20 CRY1 (ENSG00000008405) #21 ABTB3 (ENSG00000151136) #22 PWP1 (ENSG00000136045) PRDM4 (ENSG00000110851) ASCL4 (ENSG00000187855) WSCD2 (ENSG00000075035) CMKLR1 (ENSG00000174600) FICD (ENSG00000198855) SART3 (ENSG00000075856) ISCU (ENSG00000136003) TMEM119 (ENSG00000183160) SELPLG (ENSG00000110876) CORO1C (ENSG00000110880) SSH1 (ENSG00000084112) DAO (ENSG00000110887) SVOP (ENSG00000166111) USP30 (ENSG00000135093) Pan ANCESTRAL SPECIES 4 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00910000145584 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000183014.f.a.g.b.b.a.a.b ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000159434 ENSGT00910000148463 ENSGT01020000230438.C ENSGT00390000008873 ENSGT00900000141107 ENSGT00390000015813 ENSGT00390000017134 ENSGT00440000039754 ENSGT00940000156488 ENSGT00940000156133 ENSGT00390000018635.d ENSGT00940000155403.a Chimpanzee MODERN SPECIES 3 NOPCHAP1 (ENSPTRG00000005381) ALDH1L2 (ENSPTRG00000005382) WASHC4 (ENSPTRG00000005383) APPL2 (ENSPTRG00000005384) C12H12orf75 (ENSPTRG00000040847) ENSPTRG00000052769 NUAK1 (ENSPTRG00000005386) CKAP4 (ENSPTRG00000005387) TCP11L2 (ENSPTRG00000005388) POLR3B (ENSPTRG00000005390) RFX4 (ENSPTRG00000005391) RIC8B (ENSPTRG00000005392) TMEM263 (ENSPTRG00000005394) MTERF2 (ENSPTRG00000005395) #20 CRY1 (ENSPTRG00000005396) #21 BTBD11 (ENSPTRG00000005398) #22 PWP1 (ENSPTRG00000005399) PRDM4 (ENSPTRG00000005400) ASCL4 (ENSPTRG00000005401) WSCD2 (ENSPTRG00000005402) CMKLR1 (ENSPTRG00000049069) FICD (ENSPTRG00000005403) SART3 (ENSPTRG00000005404) ENSPTRG00000040156 TMEM119 (ENSPTRG00000051328) SELPLG (ENSPTRG00000005407) CORO1C (ENSPTRG00000005408) SSH1 (ENSPTRG00000047007) DAO (ENSPTRG00000005411) SVOP (ENSPTRG00000005416) USP30 (ENSPTRG00000005417) Bonobo MODERN SPECIES 3 NOPCHAP1 (ENSPPAG00000016627) ALDH1L2 (ENSPPAG00000036081) WASHC4 (ENSPPAG00000042140) APPL2 (ENSPPAG00000041764) ENSPPAG00000037210 NUAK1 (ENSPPAG00000030878) CKAP4 (ENSPPAG00000040297) TCP11L2 (ENSPPAG00000041787) POLR3B (ENSPPAG00000035177) RFX4 (ENSPPAG00000037488) RIC8B (ENSPPAG00000032248) ENSPPAG00000042000 TMEM263 (ENSPPAG00000006977) MTERF2 (ENSPPAG00000005869) #20 CRY1 (ENSPPAG00000013513) #21 ENSPPAG00000040851 #22 PWP1 (ENSPPAG00000029187) PRDM4 (ENSPPAG00000038438) WSCD2 (ENSPPAG00000032685) ENSPPAG00000029909 CMKLR1 (ENSPPAG00000031466) FICD (ENSPPAG00000031120) SART3 (ENSPPAG00000041812) ISCU (ENSPPAG00000027482) TMEM119 (ENSPPAG00000007931) SELPLG (ENSPPAG00000039506) CORO1C (ENSPPAG00000032787) SSH1 (ENSPPAG00000030525) ENSPPAG00000029901 SVOP (ENSPPAG00000028321) USP30 (ENSPPAG00000029209) Strepsirrhini ANCESTRAL SPECIES 3 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 Lemuriformes ANCESTRAL SPECIES 1 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a.c ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 Mouse lemur MODERN SPECIES 29 ALDH1L2 (ENSMICG00000011711) WASHC4 (ENSMICG00000014415) APPL2 (ENSMICG00000014454) C12orf75 (ENSMICG00000026810) NUAK1 (ENSMICG00000043070) CKAP4 (ENSMICG00000038763) TCP11L2 (ENSMICG00000008898) POLR3B (ENSMICG00000008910) RFX4 (ENSMICG00000008937) RIC8B (ENSMICG00000008959) ENSMICG00000046670 ENSMICG00000030688 ENSMICG00000046286 CRY1 (ENSMICG00000006849) #21 ENSMICG00000015692 ABTB3 (ENSMICG00000007791) #22 PWP1 (ENSMICG00000007800) PRDM4 (ENSMICG00000007807) ENSMICG00000013303 BPIFC (ENSMICG00000013327) FBXO7 (ENSMICG00000013344) TIMP3 (ENSMICG00000045156) SYN3 (ENSMICG00000013351) ENSMICG00000031007 ENSMICG00000045713 ENSMICG00000031013 LARGE1 (ENSMICG00000011834) ENSMICG00000044856 ISX (ENSMICG00000030744) HMGXB4 (ENSMICG00000010131) TOM1 (ENSMICG00000010149) Lemuriformes_a ANCESTRAL SPECIES 47 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00390000000376.g ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a.c ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Greater bamboo lemur MODERN SPECIES 735 NOPCHAP1 (ENSPSMG00000011268) ALDH1L2 (ENSPSMG00000011234) WASHC4 (ENSPSMG00000011164) APPL2 (ENSPSMG00000011121) C12orf75 (ENSPSMG00000011071) NUAK1 (ENSPSMG00000011044) ENSPSMG00000011035 CKAP4 (ENSPSMG00000011033) TCP11L2 (ENSPSMG00000011020) ENSPSMG00000010998 POLR3B (ENSPSMG00000010965) RFX4 (ENSPSMG00000010836) RIC8B (ENSPSMG00000010727) ENSPSMG00000010658 CRY1 (ENSPSMG00000010632) #21 ABTB3 (ENSPSMG00000010529) #22 PWP1 (ENSPSMG00000010374) PRDM4 (ENSPSMG00000010306) ASCL4 (ENSPSMG00000010289) RTCB (ENSPSMG00000010246) BPIFC (ENSPSMG00000010198) FBXO7 (ENSPSMG00000010121) ENSPSMG00000010076 TIMP3 (ENSPSMG00000010071) SYN3 (ENSPSMG00000010059) Coquerels sifaka MODERN SPECIES 317 SLC41A2 (ENSPCOG00000021381) ENSPCOG00000014271 ALDH1L2 (ENSPCOG00000019575) ENSPCOG00000017785 APPL2 (ENSPCOG00000016625) ENSPCOG00000026226 NUAK1 (ENSPCOG00000023506) CKAP4 (ENSPCOG00000012235) TCP11L2 (ENSPCOG00000027015) POLR3B (ENSPCOG00000014476) RFX4 (ENSPCOG00000014674) RIC8B (ENSPCOG00000020823) TMEM263 (ENSPCOG00000017077) CRY1 (ENSPCOG00000013265) #21 ABTB3 (ENSPCOG00000027917) #22 PWP1 (ENSPCOG00000008036) PRDM4 (ENSPCOG00000021060) ASCL4 (ENSPCOG00000001848) RTCB (ENSPCOG00000017243) BPIFC (ENSPCOG00000001087) FBXO7 (ENSPCOG00000021458) SYN3 (ENSPCOG00000028816) TIMP3 (ENSPCOG00000019275) LARGE1 (ENSPCOG00000006967) ISX (ENSPCOG00000022811) HMGXB4 (ENSPCOG00000025597) TOM1 (ENSPCOG00000015108) HMOX1 (ENSPCOG00000012482) MCM5 (ENSPCOG00000014472) RASD2 (ENSPCOG00000011525) Bushbaby MODERN SPECIES 122 TXNRD1 (ENSOGAG00000006281) CHST11 (ENSOGAG00000010072) SLC41A2 (ENSOGAG00000010548) NOPCHAP1 (ENSOGAG00000004845) ALDH1L2 (ENSOGAG00000004847) WASHC4 (ENSOGAG00000004852) APPL2 (ENSOGAG00000004860) NUAK1 (ENSOGAG00000027031) CKAP4 (ENSOGAG00000034090) TCP11L2 (ENSOGAG00000014770) POLR3B (ENSOGAG00000014775) RFX4 (ENSOGAG00000003546) RIC8B (ENSOGAG00000001209) TMEM263 (ENSOGAG00000001211) CRY1 (ENSOGAG00000001213) #21 ENSOGAG00000033069 #22 PWP1 (ENSOGAG00000011940) PRDM4 (ENSOGAG00000011945) ASCL4 (ENSOGAG00000024863) RTCB (ENSOGAG00000001425) BPIFC (ENSOGAG00000001429) FBXO7 (ENSOGAG00000013269) ENSOGAG00000013275 TIMP3 (ENSOGAG00000013278) ENSOGAG00000024673 ENSOGAG00000031122 ENSOGAG00000026699 ENSOGAG00000025079 LARGE1 (ENSOGAG00000000773) ISX (ENSOGAG00000004339) HMGXB4 (ENSOGAG00000024326) Euarchontoglires_A ANCESTRAL SPECIES 5 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 Glires ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 Rodentia ANCESTRAL SPECIES 5 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Rodentia_B ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Myomorpha ANCESTRAL SPECIES 2 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Muroidea ANCESTRAL SPECIES 5 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Muroidea_A ANCESTRAL SPECIES 22 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Cricetidae ANCESTRAL SPECIES 21 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Cricetinae ANCESTRAL SPECIES 22 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00950000182941.b.a ENSGT00940000154833 ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Chinese hamster chok1gshd MODERN SPECIES 83 Nopchap1 (ENSCGRG00001023760) Aldh1l2 (ENSCGRG00001012721) Washc4 (ENSCGRG00001003532) Appl2 (ENSCGRG00001020927) 1500009L16Rik (ENSCGRG00001020442) Nuak1 (ENSCGRG00001020114) Ckap4 (ENSCGRG00001019354) Tcp11l2 (ENSCGRG00001018969) Polr3b (ENSCGRG00001013651) Rfx4 (ENSCGRG00001000120) Ric8b (ENSCGRG00001016604) Fhl4 (ENSCGRG00001006554) Tmem263 (ENSCGRG00001012922) Mterf2 (ENSCGRG00001003171) #20 Cry1 (ENSCGRG00001001431) #21 Abtb3 (ENSCGRG00001021266) #22 Pwp1 (ENSCGRG00001019668) ENSCGRG00001015102 Ascl4 (ENSCGRG00001008661) Rtcb (ENSCGRG00001011173) Bpifc (ENSCGRG00001023438) Fbxo7 (ENSCGRG00001019488) Timp3 (ENSCGRG00001016875) Syn3 (ENSCGRG00001000589) ENSCGRG00001016413 Ppfia2 (ENSCGRG00001020914) #8 Acss3 (ENSCGRG00001009906) #9 Lin7a (ENSCGRG00001003313) #10 Myf5 (ENSCGRG00001009370) ##11 Myf6 (ENSCGRG00001006341) #11 Ptprq (ENSCGRG00001017128) Golden Hamster MODERN SPECIES 772 1500009L16Rik (ENSMAUG00000014593) Appl2 (ENSMAUG00000015529) Washc4 (ENSMAUG00000003292) Aldh1l2 (ENSMAUG00000011366) Nuak1 (ENSMAUG00000011975) Ckap4 (ENSMAUG00000012978) Tcp11l2 (ENSMAUG00000015732) Polr3b (ENSMAUG00000010200) Rfx4 (ENSMAUG00000006367) Ric8b (ENSMAUG00000012293) Fhl4 (ENSMAUG00000001739) Tmem263 (ENSMAUG00000008137) Mterf2 (ENSMAUG00000008278) #20 Cry1 (ENSMAUG00000013190) #21 Abtb3 (ENSMAUG00000013786) #22 Pwp1 (ENSMAUG00000008070) Prdm4 (ENSMAUG00000010662) Rtcb (ENSMAUG00000008301) Bpifc (ENSMAUG00000015664) Fbxo7 (ENSMAUG00000011199) Syn3 (ENSMAUG00000013008) Timp3 (ENSMAUG00000000361) Nopchap1 (ENSMAUG00000000307) Slc41a2 (ENSMAUG00000008865) Chst11 (ENSMAUG00000015918) Txnrd1 (ENSMAUG00000018643) Eid3 (ENSMAUG00000003345) Cricetidae_B ANCESTRAL SPECIES 29 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Northern American deer mouse MODERN SPECIES 9 Aldh1l2 (ENSPEMG00000016164) Washc4 (ENSPEMG00000016581) Appl2 (ENSPEMG00000009711) 1500009L16Rik (ENSPEMG00000009198) Nuak1 (ENSPEMG00000029161) Ckap4 (ENSPEMG00000020027) Tcp11l2 (ENSPEMG00000019827) Polr3b (ENSPEMG00000017461) Rfx4 (ENSPEMG00000019368) Ric8b (ENSPEMG00000008009) Fhl4 (ENSPEMG00000004922) Tmem263 (ENSPEMG00000029265) Mterf2 (ENSPEMG00000020115) #20 Cry1 (ENSPEMG00000019391) #21 Abtb3 (ENSPEMG00000019467) #22 Pwp1 (ENSPEMG00000019335) Prdm4 (ENSPEMG00000014598) Ascl4 (ENSPEMG00000024863) Rtcb (ENSPEMG00000019548) ENSPEMG00000027071 Fbxo7 (ENSPEMG00000019506) Syn3 (ENSPEMG00000019748) Timp3 (ENSPEMG00000026474) ENSPEMG00000029316 ENSPEMG00000027481 ENSPEMG00000028478 Nopchap1 (ENSPEMG00000028405) Slc41a2 (ENSPEMG00000021516) Chst11 (ENSPEMG00000024030) Txnrd1 (ENSPEMG00000022696) Prairie vole MODERN SPECIES 10 Washc4 (ENSMOCG00000004913) Appl2 (ENSMOCG00000005125) 1500009L16Rik (ENSMOCG00000009836) Nuak1 (ENSMOCG00000018296) ENSMOCG00000020446 Ckap4 (ENSMOCG00000008164) ENSMOCG00000013616 Tcp11l2 (ENSMOCG00000015571) Polr3b (ENSMOCG00000022129) Rfx4 (ENSMOCG00000000962) Ric8b (ENSMOCG00000001022) Tmem263 (ENSMOCG00000013754) ENSMOCG00000016128 #20 ENSMOCG00000003193 #20 Cry1 (ENSMOCG00000011094) #21 Abtb3 (ENSMOCG00000016874) #22 Pwp1 (ENSMOCG00000012913) Prdm4 (ENSMOCG00000000753) Rtcb (ENSMOCG00000002440) Bpifc (ENSMOCG00000013667) Fbxo7 (ENSMOCG00000020065) Syn3 (ENSMOCG00000016952) Timp3 (ENSMOCG00000005477) Murinae ANCESTRAL SPECIES 22 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Mus ANCESTRAL SPECIES 23 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT01020000230401.b.a ENSGT00530000064216 ENSGT00940000158637 ENSGT00940000156566 ENSGT00390000015477 ENSGT00940000162483 ENSGT00950000182885.B ##28 Mus_A ANCESTRAL SPECIES 11 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443.i ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT01020000230401.b.a ENSGT00530000064216 ENSGT00940000158637 ENSGT00940000156566 ENSGT00390000015477 ENSGT00940000162483 ENSGT00950000182885.B ##28 Mus_B ANCESTRAL SPECIES 10 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443.i ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT01020000230401.b.a ENSGT00530000064216 ENSGT00940000158637 ENSGT00940000156566 ENSGT00390000015477 ENSGT00940000162483 ENSGT00950000182885.B ##28 Mus_C ANCESTRAL SPECIES 7 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443.i ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT01020000230401.b.a ENSGT00530000064216 ENSGT00940000158637 ENSGT00940000156566 ENSGT00390000015477 ENSGT00940000162483 ENSGT00950000182885.B ##28 Steppe mouse MODERN SPECIES 2961 ENSMSIG00000029931 Nuak1 (ENSMSIG00000029927) Ckap4 (ENSMSIG00000029919) ENSMSIG00000029916 Polr3b (ENSMSIG00000029878) Rfx4 (ENSMSIG00000029858) ENSMSIG00000029841 Ric8b (ENSMSIG00000029801) Fhl4 (ENSMSIG00000029796) Tmem263 (ENSMSIG00000029794) Mterf2 (ENSMSIG00000029793) #20 Cry1 (ENSMSIG00000029783) #21 Abtb3 (ENSMSIG00000029742) #22 spretus MODERN SPECIES 1 MGP_SPRETEiJ_G0016487 Nopchap1 (MGP_SPRETEiJ_G0016488) Aldh1l2 (MGP_SPRETEiJ_G0016489) Washc4 (MGP_SPRETEiJ_G0016490) Appl2 (MGP_SPRETEiJ_G0016491) MGP_SPRETEiJ_G0016492 Ckap4 (MGP_SPRETEiJ_G0016493) Tcp11l2 (MGP_SPRETEiJ_G0016494) Polr3b (MGP_SPRETEiJ_G0016495) Rfx4 (MGP_SPRETEiJ_G0016496) Ric8b (MGP_SPRETEiJ_G0016497) Fhl4 (MGP_SPRETEiJ_G0016498) Tmem263 (MGP_SPRETEiJ_G0016499) Mterf2 (MGP_SPRETEiJ_G0016500) #20 Cry1 (MGP_SPRETEiJ_G0016501) #21 Abtb3 (MGP_SPRETEiJ_G0016502) #22 MGP_SPRETEiJ_G0016503 Pwp1 (MGP_SPRETEiJ_G0016504) Prdm4 (MGP_SPRETEiJ_G0016505) Ascl4 (MGP_SPRETEiJ_G0016506) Rtcb (MGP_SPRETEiJ_G0016507) Bpifc (MGP_SPRETEiJ_G0016508) Fbxo7 (MGP_SPRETEiJ_G0016509) Syn3 (MGP_SPRETEiJ_G0016510) Timp3 (MGP_SPRETEiJ_G0016511) Hsp90b1 (MGP_SPRETEiJ_G0016512) Ttc41 (MGP_SPRETEiJ_G0016513) Nt5dc3 (MGP_SPRETEiJ_G0016514) Stab2 (MGP_SPRETEiJ_G0016515) 1700113H08Rik (MGP_SPRETEiJ_G0016516) Ascl1 (MGP_SPRETEiJ_G0016517) Mouse MODERN SPECIES 1 Nopchap1 (ENSMUSG00000020255) Aldh1l2 (ENSMUSG00000020256) Washc4 (ENSMUSG00000034560) Appl2 (ENSMUSG00000020263) 1500009L16Rik (ENSMUSG00000087651) Nuak1 (ENSMUSG00000020032) Ckap4 (ENSMUSG00000046841) Tcp11l2 (ENSMUSG00000020034) Polr3b (ENSMUSG00000034453) Rfx4 (ENSMUSG00000020037) Ric8b (ENSMUSG00000035620) Fhl4 (ENSMUSG00000050035) Tmem263 (ENSMUSG00000060935) Mterf2 (ENSMUSG00000049038) #20 Cry1 (ENSMUSG00000020038) #21 Abtb3 (ENSMUSG00000020042) #22 Pwp1 (ENSMUSG00000001785) Prdm4 (ENSMUSG00000035529) Ascl4 (ENSMUSG00000085111) Rtcb (ENSMUSG00000001783) Bpifc (ENSMUSG00000050108) Fbxo7 (ENSMUSG00000001786) Syn3 (ENSMUSG00000059602) Timp3 (ENSMUSG00000020044) Hsp90b1 (ENSMUSG00000020048) Ttc41 (ENSMUSG00000044937) Gm49358 (ENSMUSG00000112743) Nt5dc3 (ENSMUSG00000054027) Stab2 (ENSMUSG00000035459) 1700113H08Rik (ENSMUSG00000047129) Ascl1 (ENSMUSG00000020052) Ryukyu mouse MODERN SPECIES 1 Nopchap1 (MGP_CAROLIEiJ_G0015669) Aldh1l2 (MGP_CAROLIEiJ_G0015670) Washc4 (MGP_CAROLIEiJ_G0015671) Appl2 (MGP_CAROLIEiJ_G0015672) 1500009L16Rik (MGP_CAROLIEiJ_G0015673) Nuak1 (MGP_CAROLIEiJ_G0015674) Ckap4 (MGP_CAROLIEiJ_G0015675) Tcp11l2 (MGP_CAROLIEiJ_G0015676) Polr3b (MGP_CAROLIEiJ_G0015677) Rfx4 (MGP_CAROLIEiJ_G0015678) Ric8b (MGP_CAROLIEiJ_G0015679) Fhl4 (MGP_CAROLIEiJ_G0015680) Tmem263 (MGP_CAROLIEiJ_G0015681) Mterf2 (MGP_CAROLIEiJ_G0015682) #20 Cry1 (MGP_CAROLIEiJ_G0015683) #21 Abtb3 (MGP_CAROLIEiJ_G0015684) #22 MGP_CAROLIEiJ_G0015685 Pwp1 (MGP_CAROLIEiJ_G0015686) MGP_CAROLIEiJ_G0015687 Ascl4 (MGP_CAROLIEiJ_G0015688) Rtcb (MGP_CAROLIEiJ_G0015689) Bpifc (MGP_CAROLIEiJ_G0015690) Fbxo7 (MGP_CAROLIEiJ_G0015691) Syn3 (MGP_CAROLIEiJ_G0015692) Timp3 (MGP_CAROLIEiJ_G0015693) Hsp90b1 (MGP_CAROLIEiJ_G0015694) Ttc41 (MGP_CAROLIEiJ_G0015695) Nt5dc3 (MGP_CAROLIEiJ_G0015696) Stab2 (MGP_CAROLIEiJ_G0015697) 1700113H08Rik (MGP_CAROLIEiJ_G0015698) Ascl1 (MGP_CAROLIEiJ_G0015699) Shrew mouse MODERN SPECIES 22 Nopchap1 (MGP_PahariEiJ_G0031415) Aldh1l2 (MGP_PahariEiJ_G0031414) Washc4 (MGP_PahariEiJ_G0031413) Appl2 (MGP_PahariEiJ_G0031412) 1500009L16Rik (MGP_PahariEiJ_G0031411) Nuak1 (MGP_PahariEiJ_G0031410) Ckap4 (MGP_PahariEiJ_G0031409) Tcp11l2 (MGP_PahariEiJ_G0031408) Polr3b (MGP_PahariEiJ_G0031407) Rfx4 (MGP_PahariEiJ_G0031406) Ric8b (MGP_PahariEiJ_G0031405) Fhl4 (MGP_PahariEiJ_G0031404) Tmem263 (MGP_PahariEiJ_G0031403) Mterf2 (MGP_PahariEiJ_G0031402) #20 Cry1 (MGP_PahariEiJ_G0031401) #21 Abtb3 (MGP_PahariEiJ_G0031400) #22 Pwp1 (MGP_PahariEiJ_G0031399) Prdm4 (MGP_PahariEiJ_G0031398) Ascl4 (MGP_PahariEiJ_G0031397) Rtcb (MGP_PahariEiJ_G0031396) Bpifc (MGP_PahariEiJ_G0031395) Fbxo7 (MGP_PahariEiJ_G0031394) Timp3 (MGP_PahariEiJ_G0031393) Syn3 (MGP_PahariEiJ_G0031392) Hsp90b1 (MGP_PahariEiJ_G0031391) Ttc41 (MGP_PahariEiJ_G0031390) Nt5dc3 (MGP_PahariEiJ_G0031389) Stab2 (MGP_PahariEiJ_G0031388) 1700113H08Rik (MGP_PahariEiJ_G0031387) Ascl1 (MGP_PahariEiJ_G0031386) Pah (MGP_PahariEiJ_G0031385) ##28 Rat MODERN SPECIES 17 Aldh1l2 (ENSRNOG00000008586) Washc4 (ENSRNOG00000008331) Appl2 (ENSRNOG00000008174) LOC100910996 (ENSRNOG00000060879) Nuak1 (ENSRNOG00000008061) Ckap4 (ENSRNOG00000008016) Tcp11l2 (ENSRNOG00000007587) Polr3b (ENSRNOG00000007432) Rfx4 (ENSRNOG00000051536) Ric8b (ENSRNOG00000007323) Tmem263 (ENSRNOG00000067167) Fhl4 (ENSRNOG00000006998) Mterf2 (ENSRNOG00000006978) #20 Cry1 (ENSRNOG00000006622) #21 ENSRNOG00000062414 Abtb3 (ENSRNOG00000005758) #22 Pwp1 (ENSRNOG00000005350) Prdm4 (ENSRNOG00000004962) RGD1563124 (ENSRNOG00000031205) Ascl4 (ENSRNOG00000031493) Rtcb (ENSRNOG00000004813) Bpifc (ENSRNOG00000022937) Fbxo7 (ENSRNOG00000004637) Timp3 (ENSRNOG00000004303) Syn3 (ENSRNOG00000026866) RGD1564409 (ENSRNOG00000057162) LOC120093094 (ENSRNOG00000067211) ENSRNOG00000068522 LOC691764 (ENSRNOG00000065932) ENSRNOG00000063083 ENSRNOG00000067334 Upper Galilee mountains blind mole rat MODERN SPECIES 1224 Nopchap1 (ENSNGAG00000012316) Aldh1l2 (ENSNGAG00000020174) ENSNGAG00000019266 Washc4 (ENSNGAG00000015936) ENSNGAG00000014686 1500009L16Rik (ENSNGAG00000013967) Nuak1 (ENSNGAG00000011987) Ckap4 (ENSNGAG00000015103) Tcp11l2 (ENSNGAG00000012830) Polr3b (ENSNGAG00000011308) Rfx4 (ENSNGAG00000000351) Ric8b (ENSNGAG00000018867) Tmem263 (ENSNGAG00000015885) Mterf2 (ENSNGAG00000000529) #20 Cry1 (ENSNGAG00000020732) #21 Abtb3 (ENSNGAG00000011417) #22 Pwp1 (ENSNGAG00000015833) Prdm4 (ENSNGAG00000018627) Rtcb (ENSNGAG00000005093) Bpifc (ENSNGAG00000017966) Fbxo7 (ENSNGAG00000001868) Timp3 (ENSNGAG00000001289) Syn3 (ENSNGAG00000016508) Large1 (ENSNGAG00000010206) Isx (ENSNGAG00000017683) ENSNGAG00000005159 ENSNGAG00000000700 Tom1 (ENSNGAG00000017013) Hmox1 (ENSNGAG00000020536) Mcm5 (ENSNGAG00000010698) Rasd2 (ENSNGAG00000005156) Lesser Egyptian jerboa MODERN SPECIES 42 Nopchap1 (ENSJJAG00000021635) Aldh1l2 (ENSJJAG00000014933) Washc4 (ENSJJAG00000019116) ENSJJAG00000020572 ENSJJAG00000021110 ENSJJAG00000023283 Nuak1 (ENSJJAG00000020827) Ckap4 (ENSJJAG00000006487) Tcp11l2 (ENSJJAG00000002081) Polr3b (ENSJJAG00000022575) Rfx4 (ENSJJAG00000021779) Ric8b (ENSJJAG00000019607) Tmem263 (ENSJJAG00000022899) Mterf2 (ENSJJAG00000004420) #20 Cry1 (ENSJJAG00000005742) #21 Abtb3 (ENSJJAG00000021891) #22 Pwp1 (ENSJJAG00000000594) ENSJJAG00000022448 Ascl4 (ENSJJAG00000023926) Rtcb (ENSJJAG00000010667) Bpifc (ENSJJAG00000003616) Fbxo7 (ENSJJAG00000007990) Syn3 (ENSJJAG00000000911) Timp3 (ENSJJAG00000000976) Large1 (ENSJJAG00000014636) ENSJJAG00000006423 Hmgxb4 (ENSJJAG00000000668) Tom1 (ENSJJAG00000022962) Hmox1 (ENSJJAG00000007736) Mcm5 (ENSJJAG00000004775) Rasd2 (ENSJJAG00000001069) Kangaroo rat MODERN SPECIES 322 Slc41a2 (ENSDORG00000013661) Nopchap1 (ENSDORG00000025203) Aldh1l2 (ENSDORG00000007732) Washc4 (ENSDORG00000004754) Appl2 (ENSDORG00000004755) 1500009L16Rik (ENSDORG00000028465) Nuak1 (ENSDORG00000014495) Ckap4 (ENSDORG00000005693) ENSDORG00000013342 Polr3b (ENSDORG00000013345) Rfx4 (ENSDORG00000003959) Ric8b (ENSDORG00000003964) Tmem263 (ENSDORG00000025662) Mterf2 (ENSDORG00000004167) #20 Cry1 (ENSDORG00000008719) #21 ENSDORG00000015079 #22 Rodentia_A ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Hystricomorpha ANCESTRAL SPECIES 9 ENSGT00950000183042.a.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a.e.a ENSGT00390000013899.a.a.f ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 ENSGT00940000160809 Hystricomorpha_a ANCESTRAL SPECIES 7 ENSGT00950000183042.a.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a.e.a ENSGT00390000013899.a.a.f ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 ENSGT00940000160809 ENSGT00940000169569 Guinea pig MODERN SPECIES 140 TMEM263 (ENSCPOG00000039655) MTERF2 (ENSCPOG00000006958) #20 CRY1 (ENSCPOG00000005154) #21 ABTB3 (ENSCPOG00000010157) #22 PWP1 (ENSCPOG00000010166) PRDM4 (ENSCPOG00000022385) BPIFC (ENSCPOG00000014466) FBXO7 (ENSCPOG00000014470) SYN3 (ENSCPOG00000007306) TIMP3 (ENSCPOG00000033730) LARGE1 (ENSCPOG00000014769) HMGXB4 (ENSCPOG00000006133) TOM1 (ENSCPOG00000008228) HMOX1 (ENSCPOG00000023588) MCM5 (ENSCPOG00000021931) RASD2 (ENSCPOG00000036437) MB (ENSCPOG00000034623) ENSCPOG00000036847 ENSCPOG00000036769 Hystricomorpha_b ANCESTRAL SPECIES 13 ENSGT00950000183042.a.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a.e.a ENSGT00390000013899.a.a.f ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 ENSGT00940000160809 ENSGT00940000153544.b Long-tailed chinchilla MODERN SPECIES 112 TXNRD1 (ENSCLAG00000008379) CHST11 (ENSCLAG00000007370) SLC41A2 (ENSCLAG00000007852) ALDH1L2 (ENSCLAG00000006653) WASHC4 (ENSCLAG00000007400) APPL2 (ENSCLAG00000008373) C12orf75 (ENSCLAG00000009180) NUAK1 (ENSCLAG00000010291) TCP11L2 (ENSCLAG00000010514) POLR3B (ENSCLAG00000012996) RFX4 (ENSCLAG00000012301) RIC8B (ENSCLAG00000009410) TMEM263 (ENSCLAG00000010787) MTERF2 (ENSCLAG00000017737) #20 CRY1 (ENSCLAG00000012889) #21 ABTB3 (ENSCLAG00000009148) #22 PWP1 (ENSCLAG00000007078) PRDM4 (ENSCLAG00000007545) RTCB (ENSCLAG00000007997) BPIFC (ENSCLAG00000008466) FBXO7 (ENSCLAG00000009032) SYN3 (ENSCLAG00000013480) TIMP3 (ENSCLAG00000009472) LARGE1 (ENSCLAG00000010025) HMGXB4 (ENSCLAG00000010735) TOM1 (ENSCLAG00000011464) HMOX1 (ENSCLAG00000012150) MCM5 (ENSCLAG00000012629) RASD2 (ENSCLAG00000016851) MB (ENSCLAG00000008799) STK38L (ENSCLAG00000009242) Degu MODERN SPECIES 45 CHST11 (ENSODEG00000011551) SLC41A2 (ENSODEG00000012658) ALDH1L2 (ENSODEG00000012884) WASHC4 (ENSODEG00000014832) APPL2 (ENSODEG00000011483) C12orf75 (ENSODEG00000012089) ENSODEG00000019965 NUAK1 (ENSODEG00000011149) CKAP4 (ENSODEG00000012178) TCP11L2 (ENSODEG00000011530) POLR3B (ENSODEG00000012948) RFX4 (ENSODEG00000011767) RIC8B (ENSODEG00000012256) ENSODEG00000012625 ENSODEG00000012300 #21 ABTB3 (ENSODEG00000012885) #22 PWP1 (ENSODEG00000013120) PRDM4 (ENSODEG00000014750) ENSODEG00000013033 BPIFC (ENSODEG00000011954) FBXO7 (ENSODEG00000012055) ENSODEG00000013101 TIMP3 (ENSODEG00000012882) ENSODEG00000013219 LARGE1 (ENSODEG00000013179) HMGXB4 (ENSODEG00000012864) TOM1 (ENSODEG00000012215) HMOX1 (ENSODEG00000013622) RASD2 (ENSODEG00000012526) MB (ENSODEG00000013229) ENSODEG00000013956 Naked mole-rat female MODERN SPECIES 8 ENSHGLG00000012237 APPL2 (ENSHGLG00000011008) ENSHGLG00000035698 NUAK1 (ENSHGLG00000009643) CKAP4 (ENSHGLG00000009580) TCP11L2 (ENSHGLG00000050559) POLR3B (ENSHGLG00000008833) RFX4 (ENSHGLG00000008736) RIC8B (ENSHGLG00000013181) ENSHGLG00000035631 MTERFD3 (ENSHGLG00000045278) #20 ENSHGLG00000007471 CRY1 (ENSHGLG00000007148) #21 ENSHGLG00000049522 ENSHGLG00000039272 ABTB3 (ENSHGLG00000006089) #22 PWP1 (ENSHGLG00000005391) PRDM4 (ENSHGLG00000004590) ENSHGLG00000004492 BPIFC (ENSHGLG00000004370) FBXO7 (ENSHGLG00000019425) TIMP3 (ENSHGLG00000040063) SYN3 (ENSHGLG00000017888) ENSHGLG00000044677 ENSHGLG00000017698 ENSHGLG00000018424 ENSHGLG00000049795 ENSHGLG00000048645 ENSHGLG00000018893 ENSHGLG00000048359 SMIM41 (ENSHGLG00000036559) Sciuridae ANCESTRAL SPECIES 14 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00900000141239.A ENSGT00900000141239.C ENSGT00900000141239.B ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 Marmotini ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00900000141239.A ENSGT00900000141239.C ENSGT00900000141239.B ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 Marmotini_b ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00900000141239.A ENSGT00900000141239.C ENSGT00900000141239.B ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 Arctic ground squirrel MODERN SPECIES 6 SLC41A2 (ENSUPAG00010002330) NOPCHAP1 (ENSUPAG00010002318) ALDH1L2 (ENSUPAG00010002279) WASHC4 (ENSUPAG00010002239) APPL2 (ENSUPAG00010002219) C12orf75 (ENSUPAG00010002208) NUAK1 (ENSUPAG00010002195) CKAP4 (ENSUPAG00010002184) ENSUPAG00010002164 POLR3B (ENSUPAG00010002116) RFX4 (ENSUPAG00010001950) RIC8B (ENSUPAG00010001838) TMEM263 (ENSUPAG00010001824) MTERF2 (ENSUPAG00010001815) #20 CRY1 (ENSUPAG00010001762) #21 ABTB3 (ENSUPAG00010001681) #22 PWP1 (ENSUPAG00010001650) PRDM4 (ENSUPAG00010001611) ASCL4 (ENSUPAG00010001607) RTCB (ENSUPAG00010001571) BPIFC (ENSUPAG00010001527) FBXO7 (ENSUPAG00010001438) TIMP3 (ENSUPAG00010001428) SYN3 (ENSUPAG00010001394) ENSUPAG00010001385 ENSUPAG00010001380 Squirrel MODERN SPECIES 92 SLC41A2 (ENSSTOG00000026123) NOPCHAP1 (ENSSTOG00000003100) ALDH1L2 (ENSSTOG00000008471) WASHC4 (ENSSTOG00000014295) APPL2 (ENSSTOG00000014326) ENSSTOG00000025963 ENSSTOG00000032208 NUAK1 (ENSSTOG00000027258) TCP11L2 (ENSSTOG00000026214) POLR3B (ENSSTOG00000011849) RFX4 (ENSSTOG00000015740) RIC8B (ENSSTOG00000023691) TMEM263 (ENSSTOG00000010177) MTERF2 (ENSSTOG00000010181) #20 CRY1 (ENSSTOG00000020498) #21 ABTB3 (ENSSTOG00000016162) #22 PWP1 (ENSSTOG00000026312) PRDM4 (ENSSTOG00000016168) ASCL4 (ENSSTOG00000024612) RTCB (ENSSTOG00000003878) BPIFC (ENSSTOG00000015570) FBXO7 (ENSSTOG00000021948) TIMP3 (ENSSTOG00000023341) SYN3 (ENSSTOG00000003581) ENSSTOG00000028608 ENSSTOG00000028474 LARGE1 (ENSSTOG00000021379) ISX (ENSSTOG00000020661) HMGXB4 (ENSSTOG00000009433) TOM1 (ENSSTOG00000008902) HMOX1 (ENSSTOG00000008923) Alpin marmot MODERN SPECIES 11 WASHC4 (ENSMMMG00000017204) APPL2 (ENSMMMG00000017187) C12orf75 (ENSMMMG00000017181) NUAK1 (ENSMMMG00000017169) CKAP4 (ENSMMMG00000017154) ENSMMMG00000017150 TCP11L2 (ENSMMMG00000017141) ENSMMMG00000017137 POLR3B (ENSMMMG00000017120) ENSMMMG00000017101 RFX4 (ENSMMMG00000017077) RIC8B (ENSMMMG00000017060) TMEM263 (ENSMMMG00000017048) MTERF2 (ENSMMMG00000017043) #20 CRY1 (ENSMMMG00000017030) #21 ABTB3 (ENSMMMG00000017014) #22 PWP1 (ENSMMMG00000016996) PRDM4 (ENSMMMG00000016969) RTCB (ENSMMMG00000016958) BPIFC (ENSMMMG00000016944) FBXO7 (ENSMMMG00000016939) TIMP3 (ENSMMMG00000016936) SYN3 (ENSMMMG00000016926) ENSMMMG00000016919 ENSMMMG00000016912 ENSMMMG00000016906 LARGE1 (ENSMMMG00000016881) ISX (ENSMMMG00000016864) HMGXB4 (ENSMMMG00000016847) TOM1 (ENSMMMG00000016840) ENSMMMG00000016831 Eurasian red squirrel MODERN SPECIES 14 APPL2 (ENSSVLG00005011549) C12orf75 (ENSSVLG00005011827) NUAK1 (ENSSVLG00005011959) CKAP4 (ENSSVLG00005012060) TCP11L2 (ENSSVLG00005012105) POLR3B (ENSSVLG00005012199) ENSSVLG00005012782 RFX4 (ENSSVLG00005012956) ENSSVLG00005013109 RIC8B (ENSSVLG00005013498) ENSSVLG00005013573 ENSSVLG00005013648 MTERF2 (ENSSVLG00005013701) #20 CRY1 (ENSSVLG00005013998) #21 ENSSVLG00005014113 ABTB3 (ENSSVLG00005014263) #22 PWP1 (ENSSVLG00005014967) ENSSVLG00005015021 PRDM4 (ENSSVLG00005015092) ASCL4 (ENSSVLG00005015197) RTCB (ENSSVLG00005015218) BPIFC (ENSSVLG00005015293) ENSSVLG00005015555 FBXO7 (ENSSVLG00005015587) SYN3 (ENSSVLG00005015786) TIMP3 (ENSSVLG00005016020) LARGE1 (ENSSVLG00005016069) ENSSVLG00005016143 ENSSVLG00005016204 ISX (ENSSVLG00005016243) HMGXB4 (ENSSVLG00005016292) Lagomorpha ANCESTRAL SPECIES 22 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443.e ENSGT00940000155911 ENSGT00940000162902 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b Rabbit MODERN SPECIES 15 NOPCHAP1 (ENSOCUG00000006960) ALDH1L2 (ENSOCUG00000006962) WASHC4 (ENSOCUG00000005030) APPL2 (ENSOCUG00000005042) ENSOCUG00000034454 ENSOCUG00000022751 NUAK1 (ENSOCUG00000004958) CKAP4 (ENSOCUG00000000187) ENSOCUG00000034904 POLR3B (ENSOCUG00000000884) RFX4 (ENSOCUG00000028228) RIC8B (ENSOCUG00000006126) TMEM263 (ENSOCUG00000009563) MTERF2 (ENSOCUG00000009560) #20 CRY1 (ENSOCUG00000013721) #21 ABTB3 (ENSOCUG00000002716) #22 PWP1 (ENSOCUG00000002724) PRDM4 (ENSOCUG00000012859) ENSOCUG00000008280 FBXO7 (ENSOCUG00000008289) TIMP3 (ENSOCUG00000008310) SYN3 (ENSOCUG00000023426) ENSOCUG00000028004 ENSOCUG00000022351 LARGE1 (ENSOCUG00000001734) ISX (ENSOCUG00000017205) HMGXB4 (ENSOCUG00000010619) TOM1 (ENSOCUG00000010626) HMOX1 (ENSOCUG00000010633) MCM5 (ENSOCUG00000010637) MB (ENSOCUG00000026126) Pika MODERN SPECIES 2173 ABTB3 (ENSOPRG00000010131) #22 PWP1 (ENSOPRG00000010171) PRDM4 (ENSOPRG00000010192) Tree shrew MODERN SPECIES 2496 ABTB3 (ENSTBEG00000016063) #22 Laurasiatheria ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 Eulipotyphla ANCESTRAL SPECIES 593 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 Hedgehog MODERN SPECIES 4640 ABTB3 (ENSEEUG00000006253) #22 PWP1 (ENSEEUG00000006501) PRDM4 (ENSEEUG00000006569) Laurasiatheria_a ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 Artiodactyla ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 Artiodactyla_a ANCESTRAL SPECIES 5 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 Artiodactyla_b ANCESTRAL SPECIES 5 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Cetacea ANCESTRAL SPECIES 8 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670.c ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436.c ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Odontoceti ANCESTRAL SPECIES 7 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670.c ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436.c ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Sperm whale MODERN SPECIES 17 C6H12orf45 (ENSPCTG00005019243) ALDH1L2 (ENSPCTG00005019294) WASHC4 (ENSPCTG00005019327) APPL2 (ENSPCTG00005019471) C6H12orf75 (ENSPCTG00005019785) ENSPCTG00005019877 NUAK1 (ENSPCTG00005019927) CKAP4 (ENSPCTG00005019993) TCP11L2 (ENSPCTG00005020009) POLR3B (ENSPCTG00005020061) RFX4 (ENSPCTG00005004810) RIC8B (ENSPCTG00005004991) TMEM263 (ENSPCTG00005005110) MTERF2 (ENSPCTG00005005130) #20 CRY1 (ENSPCTG00005005157) #21 ENSPCTG00005005229 #22 PWP1 (ENSPCTG00005005308) PRDM4 (ENSPCTG00005005379) ASCL4 (ENSPCTG00005005435) RTCB (ENSPCTG00005005448) BPIFC (ENSPCTG00005005486) FBXO7 (ENSPCTG00005005592) SYN3 (ENSPCTG00005005664) TIMP3 (ENSPCTG00005005768) HIGD1A (ENSPCTG00005005789) ENSPCTG00005005801 LARGE1 (ENSPCTG00005005832) ISX (ENSPCTG00005005884) HMGXB4 (ENSPCTG00005005913) TOM1 (ENSPCTG00005005958) HMOX1 (ENSPCTG00005006045) Odontoceti_a ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670.c ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436.c ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Dolphin MODERN SPECIES 3081 ABTB3 (ENSTTRG00000011001) #22 PWP1 (ENSTTRG00000011036) PRDM4 (ENSTTRG00000011056) ASCL4 (ENSTTRG00000011068) Odontoceti_b ANCESTRAL SPECIES 7 ENSGT00950000183042.a.b ENSGT00390000000376.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670.c ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436.c ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Vaquita MODERN SPECIES 1 SLC41A2 (ENSPSNG00000009272) NOPCHAP1 (ENSPSNG00000009171) ALDH1L2 (ENSPSNG00000009089) WASHC4 (ENSPSNG00000009013) APPL2 (ENSPSNG00000008946) ENSPSNG00000008880 NUAK1 (ENSPSNG00000008817) CKAP4 (ENSPSNG00000008770) TCP11L2 (ENSPSNG00000008739) POLR3B (ENSPSNG00000008691) RFX4 (ENSPSNG00000008442) RIC8B (ENSPSNG00000008347) TMEM263 (ENSPSNG00000008295) MTERF2 (ENSPSNG00000008261) #20 CRY1 (ENSPSNG00000008219) #21 ABTB3 (ENSPSNG00000008104) #22 PWP1 (ENSPSNG00000008057) PRDM4 (ENSPSNG00000008025) ASCL4 (ENSPSNG00000008008) RTCB (ENSPSNG00000007975) BPIFC (ENSPSNG00000007789) ENSPSNG00000007677 TIMP3 (ENSPSNG00000007633) SYN3 (ENSPSNG00000007457) ENSPSNG00000007432 ENSPSNG00000007418 LARGE1 (ENSPSNG00000007365) ISX (ENSPSNG00000007292) HMGXB4 (ENSPSNG00000007249) TOM1 (ENSPSNG00000007151) HMOX1 (ENSPSNG00000007094) Monodontidae ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670.c ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436.c ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Narwhal MODERN SPECIES 313 SLC41A2 (ENSMMNG00015016294) ENSMMNG00015016358 ALDH1L2 (ENSMMNG00015016442) WASHC4 (ENSMMNG00015016649) APPL2 (ENSMMNG00015016771) C12orf75 (ENSMMNG00015016826) NUAK1 (ENSMMNG00015016890) CKAP4 (ENSMMNG00015016911) TCP11L2 (ENSMMNG00015016928) POLR3B (ENSMMNG00015016988) RFX4 (ENSMMNG00015017174) RIC8B (ENSMMNG00015017361) TMEM263 (ENSMMNG00015017439) MTERF2 (ENSMMNG00015017461) #20 CRY1 (ENSMMNG00015017491) #21 ABTB3 (ENSMMNG00015017614) #22 PWP1 (ENSMMNG00015017855) PRDM4 (ENSMMNG00015017886) ASCL4 (ENSMMNG00015017916) RTCB (ENSMMNG00015017939) BPIFC (ENSMMNG00015018003) ENSMMNG00015018129 SYN3 (ENSMMNG00015015865) TIMP3 (ENSMMNG00015015920) LARGE1 (ENSMMNG00015015970) ISX (ENSMMNG00015016078) ENSMMNG00015016131 TOM1 (ENSMMNG00015016193) ENSMMNG00015016312 HMOX1 (ENSMMNG00015016338) MCM5 (ENSMMNG00015016403) Beluga whale MODERN SPECIES 45 CHST11 (ENSDLEG00000005440) SLC41A2 (ENSDLEG00000005445) CUNH12orf45 (ENSDLEG00000005454) ALDH1L2 (ENSDLEG00000005468) WASHC4 (ENSDLEG00000005491) APPL2 (ENSDLEG00000005550) NUAK1 (ENSDLEG00000005584) CKAP4 (ENSDLEG00000005591) TCP11L2 (ENSDLEG00000005597) POLR3B (ENSDLEG00000005614) RFX4 (ENSDLEG00000005648) RIC8B (ENSDLEG00000005676) TMEM263 (ENSDLEG00000005701) MTERF2 (ENSDLEG00000005704) #20 CRY1 (ENSDLEG00000005713) #21 BTBD11 (ENSDLEG00000005745) #22 PWP1 (ENSDLEG00000005821) PRDM4 (ENSDLEG00000005834) ASCL4 (ENSDLEG00000005863) RTCB (ENSDLEG00000005884) BPIFC (ENSDLEG00000005896) ENSDLEG00000005924 FBXO7 (ENSDLEG00000005928) ENSDLEG00000005935 TIMP3 (ENSDLEG00000005945) ENSDLEG00000005955 ENSDLEG00000005960 LARGE1 (ENSDLEG00000005976) ISX (ENSDLEG00000006004) HMGXB4 (ENSDLEG00000006017) TOM1 (ENSDLEG00000006048) Blue whale MODERN SPECIES 1 ENSBMSG00010007578 NOPCHAP1 (ENSBMSG00010007590) ALDH1L2 (ENSBMSG00010007618) WASHC4 (ENSBMSG00010007660) APPL2 (ENSBMSG00010007677) ENSBMSG00010007699 ENSBMSG00010007719 NUAK1 (ENSBMSG00010007730) CKAP4 (ENSBMSG00010007754) TCP11L2 (ENSBMSG00010007768) POLR3B (ENSBMSG00010007786) RFX4 (ENSBMSG00010007824) RIC8B (ENSBMSG00010007882) TMEM263 (ENSBMSG00010007946) CRY1 (ENSBMSG00010007959) #21 ABTB3 (ENSBMSG00010008002) #22 PWP1 (ENSBMSG00010008246) PRDM4 (ENSBMSG00010008261) ASCL4 (ENSBMSG00010008273) RTCB (ENSBMSG00010008283) BPIFC (ENSBMSG00010008317) ENSBMSG00010008405 ENSBMSG00010008482 TIMP3 (ENSBMSG00010008497) ENSBMSG00010008510 ENSBMSG00010008524 LARGE1 (ENSBMSG00010008540) ISX (ENSBMSG00010008567) ENSBMSG00010008585 TOM1 (ENSBMSG00010008611) HMOX1 (ENSBMSG00010008652) Pecora ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Yarkand deer MODERN SPECIES 14 SLC41A2 (ENSCHYG00000005646) NOPCHAP1 (ENSCHYG00000005781) ALDH1L2 (ENSCHYG00000005846) WASHC4 (ENSCHYG00000005953) APPL2 (ENSCHYG00000005990) C12orf75 (ENSCHYG00000006042) NUAK1 (ENSCHYG00000006097) CKAP4 (ENSCHYG00000006152) TCP11L2 (ENSCHYG00000006165) POLR3B (ENSCHYG00000006222) RFX4 (ENSCHYG00000006451) RIC8B (ENSCHYG00000006732) TMEM263 (ENSCHYG00000006874) MTERF2 (ENSCHYG00000006885) #20 CRY1 (ENSCHYG00000006894) #21 ABTB3 (ENSCHYG00000006988) #22 ENSCHYG00000007681 PWP1 (ENSCHYG00000007696) PRDM4 (ENSCHYG00000007740) ASCL4 (ENSCHYG00000007797) RTCB (ENSCHYG00000007811) BPIFC (ENSCHYG00000007868) FBXO7 (ENSCHYG00000007992) SYN3 (ENSCHYG00000008048) TIMP3 (ENSCHYG00000008114) ENSCHYG00000008148 ENSCHYG00000008163 LARGE1 (ENSCHYG00000008199) ISX (ENSCHYG00000008367) HMGXB4 (ENSCHYG00000008451) TOM1 (ENSCHYG00000008618) Percora_a ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 1254 ENSMMSG00000019875 #22 PWP1 (ENSMMSG00000019793) PRDM4 (ENSMMSG00000019724) ASCL4 (ENSMMSG00000019708) RTCB (ENSMMSG00000019658) BPIFC (ENSMMSG00000019534) FBXO7 (ENSMMSG00000019478) TIMP3 (ENSMMSG00000019456) SYN3 (ENSMMSG00000019281) ENSMMSG00000019246 ENSMMSG00000019231 ENSMMSG00000019206 LARGE1 (ENSMMSG00000019090) ENSMMSG00000019060 Siberian musk deer MODERN SPECIES 1255 SLC41A2 (ENSMMSG00000021685) ENSMMSG00000021630 ALDH1L2 (ENSMMSG00000021599) WASHC4 (ENSMMSG00000021556) APPL2 (ENSMMSG00000021487) ENSMMSG00000021426 NUAK1 (ENSMMSG00000021389) CKAP4 (ENSMMSG00000021364) TCP11L2 (ENSMMSG00000021328) POLR3B (ENSMMSG00000021143) RFX4 (ENSMMSG00000020864) RIC8B (ENSMMSG00000020707) TMEM263 (ENSMMSG00000020668) MTERF2 (ENSMMSG00000020659) #20 CRY1 (ENSMMSG00000020037) #21 ENSMMSG00000019902 #22 Bovidae ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Bovinae ANCESTRAL SPECIES 10 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Bos ANCESTRAL SPECIES 2 ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00970000197072 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Bos_a ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Domestic yak MODERN SPECIES 24 ALDH1L2 (ENSBGRG00000018959) WASHC4 (ENSBGRG00000018157) APPL2 (ENSBGRG00000017564) C12orf75 (ENSBGRG00000017371) ENSBGRG00000017339 NUAK1 (ENSBGRG00000017295) CKAP4 (ENSBGRG00000017276) TCP11L2 (ENSBGRG00000017183) POLR3B (ENSBGRG00000016356) RFX4 (ENSBGRG00000016029) RIC8B (ENSBGRG00000015662) MTERF2 (ENSBGRG00000015624) #20 ENSBGRG00000015563 CRY1 (ENSBGRG00000015409) #21 ENSBGRG00000015357 ABTB3 (ENSBGRG00000014385) #22 PWP1 (ENSBGRG00000014122) PRDM4 (ENSBGRG00000013987) ASCL4 (ENSBGRG00000013962) RTCB (ENSBGRG00000013813) ENSBGRG00000013797 BPIFC (ENSBGRG00000013532) ENSBGRG00000013450 FBXO7 (ENSBGRG00000013412) TIMP3 (ENSBGRG00000013366) SYN3 (ENSBGRG00000013205) ENSBGRG00000013168 ENSBGRG00000013155 ENSBGRG00000013111 ENSBGRG00000013087 LARGE1 (ENSBGRG00000012772) Wild yak MODERN SPECIES 590 NUAK1 (ENSBMUG00000003355) CKAP4 (ENSBMUG00000003414) TCP11L2 (ENSBMUG00000003454) POLR3B (ENSBMUG00000003546) RFX4 (ENSBMUG00000003646) RIC8B (ENSBMUG00000003725) TMEM263 (ENSBMUG00000003752) MTERF2 (ENSBMUG00000003775) #20 CRY1 (ENSBMUG00000003802) #21 ENSBMUG00000003817 ABTB3 (ENSBMUG00000003937) #22 PWP1 (ENSBMUG00000004016) PRDM4 (ENSBMUG00000004032) ASCL4 (ENSBMUG00000004047) RTCB (ENSBMUG00000004067) BPIFC (ENSBMUG00000004131) FBXO7 (ENSBMUG00000004148) ENSBMUG00000004203 Bos_b ANCESTRAL SPECIES 22 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00970000197072 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Hybrid Bos Indicus MODERN SPECIES 24 NOPCHAP1 (ENSBIXG00005021950) ALDH1L2 (ENSBIXG00005003729) WASHC4 (ENSBIXG00005022103) APPL2 (ENSBIXG00005022222) ENSBIXG00005007376 NUAK1 (ENSBIXG00005022428) CKAP4 (ENSBIXG00005003826) TCP11L2 (ENSBIXG00005007167) POLR3B (ENSBIXG00005005753) RFX4 (ENSBIXG00005003898) RIC8B (ENSBIXG00005022958) TMEM263 (ENSBIXG00005023054) MTERF2 (ENSBIXG00005023083) #20 CRY1 (ENSBIXG00005003939) #21 ENSBIXG00005023153 ABTB3 (ENSBIXG00005023497) #22 PWP1 (ENSBIXG00005023573) PRDM4 (ENSBIXG00005023631) ASCL4 (ENSBIXG00005023647) RTCB (ENSBIXG00005023677) ENSBIXG00005023686 BPIFC (ENSBIXG00005023750) FBXO7 (ENSBIXG00005006478) TIMP3 (ENSBIXG00005004074) SYN3 (ENSBIXG00005023898) ENSBIXG00005023962 ENSBIXG00005023983 ENSBIXG00005023998 ENSBIXG00005024027 ENSBIXG00005024033 ENSBIXG00005024053 Cow MODERN SPECIES 24 SLC41A2 (ENSBTAG00000021875) NOPCHAP1 (ENSBTAG00000021196) ALDH1L2 (ENSBTAG00000006326) WASHC4 (ENSBTAG00000033735) APPL2 (ENSBTAG00000030784) NUAK1 (ENSBTAG00000010457) CKAP4 (ENSBTAG00000011913) TCP11L2 (ENSBTAG00000002127) POLR3B (ENSBTAG00000004781) RFX4 (ENSBTAG00000025837) RIC8B (ENSBTAG00000000147) TMEM263 (ENSBTAG00000053105) MTERF2 (ENSBTAG00000010144) #20 CRY1 (ENSBTAG00000010149) #21 ENSBTAG00000001858 BTBD11 (ENSBTAG00000027064) #22 PWP1 (ENSBTAG00000004654) PRDM4 (ENSBTAG00000012999) ASCL4 (ENSBTAG00000046402) RTCB (ENSBTAG00000011070) BPIFC (ENSBTAG00000011071) FBXO7 (ENSBTAG00000020634) SYN3 (ENSBTAG00000020636) TIMP3 (ENSBTAG00000020638) ENSBTAG00000050644 ENSBTAG00000030683 MGC137211 (ENSBTAG00000018556) MGC137014 (ENSBTAG00000026666) LARGE1 (ENSBTAG00000021953) ENSBTAG00000053499 ISX (ENSBTAG00000007674) American bison MODERN SPECIES 3241 NOPCHAP1 (ENSBBBG00000016359) ALDH1L2 (ENSBBBG00000016382) WASHC4 (ENSBBBG00000016442) APPL2 (ENSBBBG00000016518) C12orf75 (ENSBBBG00000016543) NUAK1 (ENSBBBG00000016559) CKAP4 (ENSBBBG00000016569) TCP11L2 (ENSBBBG00000000754) POLR3B (ENSBBBG00000004112) RFX4 (ENSBBBG00000000732) RIC8B (ENSBBBG00000016769) TMEM263 (ENSBBBG00000016797) MTERF2 (ENSBBBG00000007427) #20 CRY1 (ENSBBBG00000008557) #21 ENSBBBG00000004162 ABTB3 (ENSBBBG00000016923) #22 PWP1 (ENSBBBG00000016973) PRDM4 (ENSBBBG00000017010) ASCL4 (ENSBBBG00000017022) RTCB (ENSBBBG00000017046) BPIFC (ENSBBBG00000017127) FBXO7 (ENSBBBG00000017433) TIMP3 (ENSBBBG00000017468) SYN3 (ENSBBBG00000017511) ENSBBBG00000006897 ENSBBBG00000008005 ENSBBBG00000017528 LARGE1 (ENSBBBG00000017596) Caprinae ANCESTRAL SPECIES ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911.r ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415.l ENSGT00940000159601 ENSGT00940000155415.k ENSGT00900000141239.A ENSGT00900000141239.B ENSGT00900000141239.C ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 Goat MODERN SPECIES 24 CHST11 (ENSCHIG00000015554) SLC41A2 (ENSCHIG00000005363) NOPCHAP1 (ENSCHIG00000023513) ALDH1L2 (ENSCHIG00000019598) WASHC4 (ENSCHIG00000017559) APPL2 (ENSCHIG00000010566) NUAK1 (ENSCHIG00000026094) CKAP4 (ENSCHIG00000019667) TCP11L2 (ENSCHIG00000014442) POLR3B (ENSCHIG00000015728) RFX4 (ENSCHIG00000022571) RIC8B (ENSCHIG00000019268) TMEM263 (ENSCHIG00000015467) MTERF2 (ENSCHIG00000013119) #20 CRY1 (ENSCHIG00000027028) #21 ABTB3 (ENSCHIG00000026927) #22 PWP1 (ENSCHIG00000024562) PRDM4 (ENSCHIG00000019409) ASCL4 (ENSCHIG00000026326) ENSCHIG00000027009 BPIFC (ENSCHIG00000021447) FBXO7 (ENSCHIG00000025643) ENSCHIG00000019205 ENSCHIG00000007497 TIMP3 (ENSCHIG00000022544) ENSCHIG00000011931 ENSCHIG00000024931 ENSCHIG00000024510 ENSCHIG00000026622 LARGE1 (ENSCHIG00000015609) ENSCHIG00000011042 Camelidae ANCESTRAL SPECIES 39 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Arabian camel MODERN SPECIES 3 SLC41A2 (ENSCDRG00005018798) NOPCHAP1 (ENSCDRG00005018766) ALDH1L2 (ENSCDRG00005018717) ENSCDRG00005018657 APPL2 (ENSCDRG00005018608) ENSCDRG00005018505 NUAK1 (ENSCDRG00005018419) CKAP4 (ENSCDRG00005018403) TCP11L2 (ENSCDRG00005018354) POLR3B (ENSCDRG00005017959) RIC8B (ENSCDRG00005017763) TMEM263 (ENSCDRG00005017734) MTERF2 (ENSCDRG00005017725) #20 CRY1 (ENSCDRG00005017689) #21 ENSCDRG00005017653 ABTB3 (ENSCDRG00005016449) #22 PWP1 (ENSCDRG00005016339) PRDM4 (ENSCDRG00005016292) ASCL4 (ENSCDRG00005016253) RTCB (ENSCDRG00005016207) BPIFC (ENSCDRG00005015980) FBXO7 (ENSCDRG00005015847) TIMP3 (ENSCDRG00005015818) SYN3 (ENSCDRG00005015679) CPSF6 (ENSCDRG00005015610) ENSCDRG00005015562 CPM (ENSCDRG00005015280) MDM2 (ENSCDRG00005014898) SLC35E3 (ENSCDRG00005014826) NUP107 (ENSCDRG00005014693) RAP1B (ENSCDRG00005014287) Alpaca MODERN SPECIES 3180 ENSVPAG00000002212 #22 PWP1 (ENSVPAG00000002214) PRDM4 (ENSVPAG00000002215) Suina ANCESTRAL SPECIES 21 ENSGT00940000155606.b ENSGT00950000182837.b.a ENSGT00940000155687 ENSGT00390000010327 ENSGT00940000159544 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Chacoan peccary MODERN SPECIES 899 CACNB3 (ENSCWAG00000020007) ADCY6 (ENSCWAG00000020127) TEX49 (ENSCWAG00000020170) CCNT1 (ENSCWAG00000020191) ENSCWAG00000020216 NUAK1 (ENSCWAG00000020234) CKAP4 (ENSCWAG00000020245) TCP11L2 (ENSCWAG00000020258) POLR3B (ENSCWAG00000020275) RFX4 (ENSCWAG00000020335) RIC8B (ENSCWAG00000020465) TMEM263 (ENSCWAG00000020539) MTERF2 (ENSCWAG00000020546) #20 CRY1 (ENSCWAG00000020554) #21 ENSCWAG00000020556 ABTB3 (ENSCWAG00000020574) #22 PWP1 (ENSCWAG00000020713) PRDM4 (ENSCWAG00000020729) ASCL4 (ENSCWAG00000020748) RTCB (ENSCWAG00000020751) BPIFC (ENSCWAG00000020779) FBXO7 (ENSCWAG00000020839) SYN3 (ENSCWAG00000020871) TIMP3 (ENSCWAG00000020918) LARGE1 (ENSCWAG00000020937) ISX (ENSCWAG00000020952) HMGXB4 (ENSCWAG00000020965) TOM1 (ENSCWAG00000020986) HMOX1 (ENSCWAG00000021021) MCM5 (ENSCWAG00000021031) RASD2 (ENSCWAG00000021044) Pig MODERN SPECIES 13 CACNB3 (ENSSSCG00000032967) ADCY6 (ENSSSCG00000000175) TEX49 (ENSSSCG00000000174) CCNT1 (ENSSSCG00000038181) C12orf75 (ENSSSCG00000031661) NUAK1 (ENSSSCG00000032861) CKAP4 (ENSSSCG00000000171) TCP11L2 (ENSSSCG00000024881) POLR3B (ENSSSCG00000057209) RFX4 (ENSSSCG00000052141) RIC8B (ENSSSCG00000000167) TMEM263 (ENSSSCG00000038968) MTERF2 (ENSSSCG00000039109) #20 CRY1 (ENSSSCG00000000164) #21 ENSSSCG00000036971 ABTB3 (ENSSSCG00000000162) #22 PWP1 (ENSSSCG00000000161) PRDM4 (ENSSSCG00000000160) ASCL4 (ENSSSCG00000000159) RTCB (ENSSSCG00000000158) BPIFC (ENSSSCG00000000157) FBXO7 (ENSSSCG00000000156) SYN3 (ENSSSCG00000040453) TIMP3 (ENSSSCG00000031866) ENSSSCG00000000151 ENSSSCG00000046062 RBFOX2 (ENSSSCG00000000152) ENSSSCG00000039706 ENSSSCG00000000148 MYH9 (ENSSSCG00000000145) TXN2 (ENSSSCG00000000144) Laurasiatheria_b ANCESTRAL SPECIES 6 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Laurasiatheria_c ANCESTRAL SPECIES 5 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Equus ANCESTRAL SPECIES 21 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Horse MODERN SPECIES 20 NOPCHAP1 (ENSECAG00000023579) ALDH1L2 (ENSECAG00000023888) WASHC4 (ENSECAG00000005038) APPL2 (ENSECAG00000020564) ENSECAG00000030502 NUAK1 (ENSECAG00000002145) CKAP4 (ENSECAG00000006881) TCP11L2 (ENSECAG00000009099) POLR3B (ENSECAG00000019086) RFX4 (ENSECAG00000005111) RIC8B (ENSECAG00000009279) TMEM263 (ENSECAG00000035229) MTERF2 (ENSECAG00000014795) #20 CRY1 (ENSECAG00000014833) #21 ENSECAG00000058028 BTBD11 (ENSECAG00000009835) #22 PWP1 (ENSECAG00000022620) PRDM4 (ENSECAG00000015423) ASCL4 (ENSECAG00000026928) RTCB (ENSECAG00000023998) BPIFC (ENSECAG00000024388) FBXO7 (ENSECAG00000009510) SYN3 (ENSECAG00000019504) TIMP3 (ENSECAG00000018314) LARGE1 (ENSECAG00000020560) ISX (ENSECAG00000023597) HMGXB4 (ENSECAG00000023930) TOM1 (ENSECAG00000011873) HMOX1 (ENSECAG00000001129) MCM5 (ENSECAG00000014368) RASD2 (ENSECAG00000038427) Donkey MODERN SPECIES 11 GALNT4 (ENSEASG00005032213) POC1B (ENSEASG00005019319) ENSEASG00005029510 DUSP6 (ENSEASG00005019316) ENSEASG00005027464 ENSEASG00005026650 KITLG (ENSEASG00005019312) TMTC3 (ENSEASG00005019307) CEP290 (ENSEASG00005019245) C12orf29 (ENSEASG00005019218) ENSEASG00005019211 ENSEASG00005027905 ENSEASG00005037652 MTERF2 (ENSEASG00005030987) #20 CRY1 (ENSEASG00005019194) #21 ABTB3 (ENSEASG00005019112) #22 PWP1 (ENSEASG00005019071) PRDM4 (ENSEASG00005019067) ENSEASG00005019063 ENSEASG00005019059 BPIFC (ENSEASG00005019055) FBXO7 (ENSEASG00005019009) ENSEASG00005019000 TIMP3 (ENSEASG00005018998) LARGE1 (ENSEASG00005018985) ENSEASG00005018970 HMGXB4 (ENSEASG00005018962) TOM1 (ENSEASG00005018954) HMOX1 (ENSEASG00005034422) MCM5 (ENSEASG00005018944) ENSEASG00005018937 Chiroptera ANCESTRAL SPECIES 23 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Megabat MODERN SPECIES 3636 CRY1 (ENSPVAG00000001590) #21 ABTB3 (ENSPVAG00000001591) #22 PWP1 (ENSPVAG00000001592) PRDM4 (ENSPVAG00000001596) ASCL4 (ENSPVAG00000001597) Microchiroptera ANCESTRAL SPECIES 8 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Microbat MODERN SPECIES 1040 ENSMLUG00000007251 ALDH1L2 (ENSMLUG00000007263) WASHC4 (ENSMLUG00000007308) APPL2 (ENSMLUG00000007408) ENSMLUG00000028275 C12orf75 (ENSMLUG00000024665) NUAK1 (ENSMLUG00000006906) CKAP4 (ENSMLUG00000016221) TCP11L2 (ENSMLUG00000016228) POLR3B (ENSMLUG00000016235) RFX4 (ENSMLUG00000016257) RIC8B (ENSMLUG00000016270) TMEM263 (ENSMLUG00000029065) MTERF2 (ENSMLUG00000016281) #20 CRY1 (ENSMLUG00000016284) #21 ABTB3 (ENSMLUG00000000748) #22 PWP1 (ENSMLUG00000000756) PRDM4 (ENSMLUG00000000767) ASCL4 (ENSMLUG00000023526) RTCB (ENSMLUG00000007803) BPIFC (ENSMLUG00000008017) FBXO7 (ENSMLUG00000008033) SYN3 (ENSMLUG00000008065) TIMP3 (ENSMLUG00000027724) LARGE1 (ENSMLUG00000003416) ISX (ENSMLUG00000006944) HMGXB4 (ENSMLUG00000001977) ENSMLUG00000026010 HMOX1 (ENSMLUG00000008815) MCM5 (ENSMLUG00000001987) RASD2 (ENSMLUG00000013318) Greater horseshoe bat MODERN SPECIES 1 NOPCHAP1 (ENSRFEG00010010275) ALDH1L2 (ENSRFEG00010009922) WASHC4 (ENSRFEG00010009868) APPL2 (ENSRFEG00010009800) ENSRFEG00010009631 NUAK1 (ENSRFEG00010009528) CKAP4 (ENSRFEG00010009488) TCP11L2 (ENSRFEG00010009441) POLR3B (ENSRFEG00010009356) RFX4 (ENSRFEG00010009076) RIC8B (ENSRFEG00010008778) ENSRFEG00010008733 MTERF2 (ENSRFEG00010008711) #20 CRY1 (ENSRFEG00010008666) #21 ENSRFEG00010008649 ABTB3 (ENSRFEG00010008001) #22 PWP1 (ENSRFEG00010007865) ENSRFEG00010007833 PRDM4 (ENSRFEG00010007783) ASCL4 (ENSRFEG00010007756) BT_m004_jsmF9A7Cr (ENSRFEG00010007717) BPIFC (ENSRFEG00010007450) FBXO7 (ENSRFEG00010007248) TIMP3 (ENSRFEG00010007197) SYN3 (ENSRFEG00010007094) LARGE1 (ENSRFEG00010006902) ISX (ENSRFEG00010006799) HMGXB4 (ENSRFEG00010006753) TOM1 (ENSRFEG00010006608) HMOX1 (ENSRFEG00010006539) MCM5 (ENSRFEG00010006455) Carnivora ANCESTRAL SPECIES 3 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Felidae ANCESTRAL SPECIES 2 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Cat MODERN SPECIES 238 ENSFCAG00000024200 CB4H12orf45 (ENSFCAG00000039522) ALDH1L2 (ENSFCAG00000001459) WASHC4 (ENSFCAG00000001460) APPL2 (ENSFCAG00000001461) ENSFCAG00000053109 NUAK1 (ENSFCAG00000046248) CKAP4 (ENSFCAG00000034811) TCP11L2 (ENSFCAG00000013633) POLR3B (ENSFCAG00000015617) RFX4 (ENSFCAG00000015618) RIC8B (ENSFCAG00000023932) TMEM263 (ENSFCAG00000028960) MTERF2 (ENSFCAG00000030683) #20 CRY1 (ENSFCAG00000028263) #21 BTBD11 (ENSFCAG00000010776) #22 PWP1 (ENSFCAG00000031370) PRDM4 (ENSFCAG00000022478) ASCL4 (ENSFCAG00000044499) RTCB (ENSFCAG00000026480) BPIFC (ENSFCAG00000009799) FBXO7 (ENSFCAG00000009802) SYN3 (ENSFCAG00000009804) TIMP3 (ENSFCAG00000034191) LARGE1 (ENSFCAG00000015793) ISX (ENSFCAG00000013025) HMGXB4 (ENSFCAG00000003298) TOM1 (ENSFCAG00000003299) HMOX1 (ENSFCAG00000040191) MCM5 (ENSFCAG00000013844) RASD2 (ENSFCAG00000042800) Panthera ANCESTRAL SPECIES ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Panthera_a ANCESTRAL SPECIES 12 ENSGT00940000153889.e.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 lion MODERN SPECIES 7 ALDH1L2 (ENSPLOG00000021623) WASHC4 (ENSPLOG00000021702) APPL2 (ENSPLOG00000021757) ENSPLOG00000021789 ENSPLOG00000021828 NUAK1 (ENSPLOG00000021840) CKAP4 (ENSPLOG00000021865) TCP11L2 (ENSPLOG00000021880) POLR3B (ENSPLOG00000021928) RFX4 (ENSPLOG00000022021) RIC8B (ENSPLOG00000022104) ENSPLOG00000022146 TMEM263 (ENSPLOG00000022158) MTERF2 (ENSPLOG00000022164) #20 CRY1 (ENSPLOG00000022173) #21 ABTB3 (ENSPLOG00000022210) #22 PWP1 (ENSPLOG00000022255) PRDM4 (ENSPLOG00000022270) ASCL4 (ENSPLOG00000022281) RTCB (ENSPLOG00000022290) BPIFC (ENSPLOG00000001857) FBXO7 (ENSPLOG00000001927) SYN3 (ENSPLOG00000002067) TIMP3 (ENSPLOG00000002121) LARGE1 (ENSPLOG00000002156) ISX (ENSPLOG00000002230) HMGXB4 (ENSPLOG00000002252) TOM1 (ENSPLOG00000002363) HMOX1 (ENSPLOG00000002442) MCM5 (ENSPLOG00000002476) RASD2 (ENSPLOG00000002506) leopard MODERN SPECIES 13 NOPCHAP1 (ENSPPRG00000003272) ALDH1L2 (ENSPPRG00000003194) WASHC4 (ENSPPRG00000003069) APPL2 (ENSPPRG00000000703) C12orf75 (ENSPPRG00000022693) NUAK1 (ENSPPRG00000014460) ENSPPRG00000013296 ENSPPRG00000012657 TCP11L2 (ENSPPRG00000012496) POLR3B (ENSPPRG00000012076) RFX4 (ENSPPRG00000011565) RIC8B (ENSPPRG00000009882) TMEM263 (ENSPPRG00000009078) MTERF2 (ENSPPRG00000015020) #20 CRY1 (ENSPPRG00000008263) #21 ABTB3 (ENSPPRG00000007934) #22 PWP1 (ENSPPRG00000004997) PRDM4 (ENSPPRG00000004144) ASCL4 (ENSPPRG00000014891) RTCB (ENSPPRG00000004038) BPIFC (ENSPPRG00000003756) FBXO7 (ENSPPRG00000002329) SYN3 (ENSPPRG00000001531) TIMP3 (ENSPPRG00000000916) LARGE1 (ENSPPRG00000000649) ISX (ENSPPRG00000022857) HMGXB4 (ENSPPRG00000023113) TOM1 (ENSPPRG00000023413) HMOX1 (ENSPPRG00000024423) MCM5 (ENSPPRG00000024566) RASD2 (ENSPPRG00000019383) Tiger MODERN SPECIES 533 SLC41A2 (ENSPTIG00000019143) NOPCHAP1 (ENSPTIG00000018686) ALDH1L2 (ENSPTIG00000016186) WASHC4 (ENSPTIG00000010720) APPL2 (ENSPTIG00000007687) C12orf75 (ENSPTIG00000006041) NUAK1 (ENSPTIG00000004616) CKAP4 (ENSPTIG00000003548) TCP11L2 (ENSPTIG00000022100) POLR3B (ENSPTIG00000022085) RFX4 (ENSPTIG00000021816) RIC8B (ENSPTIG00000019494) TMEM263 (ENSPTIG00000017470) MTERF2 (ENSPTIG00000001843) #20 CRY1 (ENSPTIG00000016412) #21 ABTB3 (ENSPTIG00000007950) #22 PWP1 (ENSPTIG00000006827) PRDM4 (ENSPTIG00000005847) RTCB (ENSPTIG00000020499) BPIFC (ENSPTIG00000016396) FBXO7 (ENSPTIG00000014668) TIMP3 (ENSPTIG00000014169) SYN3 (ENSPTIG00000012327) LARGE1 (ENSPTIG00000006861) ISX (ENSPTIG00000005608) HMGXB4 (ENSPTIG00000004430) TOM1 (ENSPTIG00000021409) HMOX1 (ENSPTIG00000020337) MCM5 (ENSPTIG00000017342) RASD2 (ENSPTIG00000016963) MB (ENSPTIG00000014883) Caniformia ANCESTRAL SPECIES 20 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00950000185154 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Canidae ANCESTRAL SPECIES 10 ENSGT00390000002524 ENSGT00940000158319 ENSGT00950000185154 ENSGT00940000167128 ENSGT00610000087444 ENSGT00390000000153.l.a.eb ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Canis_lupus ANCESTRAL SPECIES 9 ENSGT00940000158319 ENSGT00950000185154 ENSGT00940000167128 ENSGT00610000087444 ENSGT00390000000153.l.a.eb ENSGT00940000157255 ENSGT00390000015968 ENSGT00390000005254.i.a.b.j.b ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911.s ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Dingo MODERN SPECIES 307 ENSCAFG00020005219 APPL2 (ENSCAFG00020005205) ENSCAFG00020005182 ENSCAFG00020005179 ENSCAFG00020005124 NUAK1 (ENSCAFG00020005117) CKAP4 (ENSCAFG00020005091) ENSCAFG00020005089 TCP11L2 (ENSCAFG00020005088) POLR3B (ENSCAFG00020005062) RFX4 (ENSCAFG00020005027) RIC8B (ENSCAFG00020005022) TMEM263 (ENSCAFG00020004996) MTERF2 (ENSCAFG00020004993) #20 CRY1 (ENSCAFG00020004979) #21 ABTB3 (ENSCAFG00020004942) #22 PWP1 (ENSCAFG00020004921) ENSCAFG00020004919 PRDM4 (ENSCAFG00020004916) ASCL4 (ENSCAFG00020004911) ENSCAFG00020004890 BPIFC (ENSCAFG00020004848) FBXO7 (ENSCAFG00020004763) ENSCAFG00020004756 TIMP3 (ENSCAFG00020004747) ENSCAFG00020004742 ENSCAFG00020004732 LARGE1 (ENSCAFG00020004723) ENSCAFG00020004691 ISX (ENSCAFG00020004651) HMGXB4 (ENSCAFG00020004587) Dog MODERN SPECIES 1 WASHC4 (ENSCAFG00845006021) APPL2 (ENSCAFG00845005921) ENSCAFG00845005863 ENSCAFG00845005795 ENSCAFG00845005724 NUAK1 (ENSCAFG00845005700) CKAP4 (ENSCAFG00845013172) ENSCAFG00845013150 TCP11L2 (ENSCAFG00845013102) POLR3B (ENSCAFG00845013006) RFX4 (ENSCAFG00845012620) RIC8B (ENSCAFG00845012335) TMEM263 (ENSCAFG00845012231) MTERF2 (ENSCAFG00845012213) #20 CRY1 (ENSCAFG00845012163) #21 BTBD11 (ENSCAFG00845011667) #22 PWP1 (ENSCAFG00845011494) PRDM4 (ENSCAFG00845011355) ENSCAFG00845011320 ENSCAFG00845011277 BPIFC (ENSCAFG00845011126) FBXO7 (ENSCAFG00845011055) TIMP3 (ENSCAFG00845010998) SYN3 (ENSCAFG00845010890) LARGE1 (ENSCAFG00845010461) ENSCAFG00845010338 ISX (ENSCAFG00845010299) HMGXB4 (ENSCAFG00845010222) TOM1 (ENSCAFG00845009904) HMOX1 (ENSCAFG00845009778) MCM5 (ENSCAFG00845009614) Red fox MODERN SPECIES 84 WASHC4 (ENSVVUG00000023049) APPL2 (ENSVVUG00000023057) ENSVVUG00000023064 ENSVVUG00000023065 ENSVVUG00000023074 ENSVVUG00000023081 NUAK1 (ENSVVUG00000023089) CKAP4 (ENSVVUG00000023094) TCP11L2 (ENSVVUG00000023095) POLR3B (ENSVVUG00000023101) RFX4 (ENSVVUG00000023150) RIC8B (ENSVVUG00000023164) TMEM263 (ENSVVUG00000023180) MTERF2 (ENSVVUG00000023182) #20 CRY1 (ENSVVUG00000023184) #21 ABTB3 (ENSVVUG00000023211) #22 PWP1 (ENSVVUG00000023390) PRDM4 (ENSVVUG00000023397) ENSVVUG00000023398 RTCB (ENSVVUG00000023408) BPIFC (ENSVVUG00000023482) FBXO7 (ENSVVUG00000023488) ENSVVUG00000023491 TIMP3 (ENSVVUG00000023494) ENSVVUG00000023500 ENSVVUG00000023507 LARGE1 (ENSVVUG00000023512) ISX (ENSVVUG00000023529) HMGXB4 (ENSVVUG00000023533) TOM1 (ENSVVUG00000023536) HMOX1 (ENSVVUG00000023539) Caniformia_b ANCESTRAL SPECIES 18 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00950000185154 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Mustelinae ANCESTRAL SPECIES 4 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G ENSGT00940000161129 Ferret MODERN SPECIES 171 ALDH1L2 (ENSMPUG00000012098) WASHC4 (ENSMPUG00000012104) APPL2 (ENSMPUG00000012115) ENSMPUG00000012124 NUAK1 (ENSMPUG00000012127) CKAP4 (ENSMPUG00000012131) TCP11L2 (ENSMPUG00000012134) POLR3B (ENSMPUG00000012138) RFX4 (ENSMPUG00000012144) RIC8B (ENSMPUG00000012153) TMEM263 (ENSMPUG00000012156) MTERF2 (ENSMPUG00000020039) #20 CRY1 (ENSMPUG00000012161) #21 ENSMPUG00000012167 ENSMPUG00000019286 ABTB3 (ENSMPUG00000012173) #22 PWP1 (ENSMPUG00000012233) PRDM4 (ENSMPUG00000012238) ENSMPUG00000012282 RTCB (ENSMPUG00000012285) BPIFC (ENSMPUG00000012338) FBXO7 (ENSMPUG00000012375) ENSMPUG00000012380 ENSMPUG00000012382 TIMP3 (ENSMPUG00000012384) LARGE1 (ENSMPUG00000012387) ENSMPUG00000012395 ENSMPUG00000012400 HMGXB4 (ENSMPUG00000012403) TOM1 (ENSMPUG00000012413) HMOX1 (ENSMPUG00000012420) American mink MODERN SPECIES 20 CL045 (ENSNVIG00000010877) ALDH1L2 (ENSNVIG00000010886) WASHC4 (ENSNVIG00000010917) ENSNVIG00000010994 APPL2 (ENSNVIG00000011001) ENSNVIG00000011042 NUAK1 (ENSNVIG00000011061) CKAP4 (ENSNVIG00000011073) T11L2 (ENSNVIG00000011089) POLR3B (ENSNVIG00000011125) RFX4 (ENSNVIG00000011307) RIC8B (ENSNVIG00000011404) TMEM263 (ENSNVIG00000011465) MTER3 (ENSNVIG00000011483) #20 CRY1 (ENSNVIG00000011497) #21 ABTB3 (ENSNVIG00000011571) #22 PWP1 (ENSNVIG00000011692) Ursidae ANCESTRAL SPECIES 13 ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00950000185154 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911.v ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601.b ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Ursus ANCESTRAL SPECIES 29 ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524.o ENSGT00940000158319 ENSGT00950000185154 ENSGT00940000167128 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911.v ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601.b ENSGT00940000158497 ENSGT00940000161702 ENSGT01030000234881 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Polar bear MODERN SPECIES 280 NOPCHAP1 (ENSUMAG00000018700) ALDH1L2 (ENSUMAG00000018417) WASHC4 (ENSUMAG00000017619) APPL2 (ENSUMAG00000017538) ENSUMAG00000017537 ENSUMAG00000017535 ENSUMAG00000017531 NUAK1 (ENSUMAG00000017528) TCP11L2 (ENSUMAG00000017524) POLR3B (ENSUMAG00000017384) RFX4 (ENSUMAG00000017340) RIC8B (ENSUMAG00000017297) TMEM263 (ENSUMAG00000017271) MTERF2 (ENSUMAG00000017268) #20 CRY1 (ENSUMAG00000017250) #21 ABTB3 (ENSUMAG00000017243) #22 PWP1 (ENSUMAG00000017237) PRDM4 (ENSUMAG00000017231) RTCB (ENSUMAG00000017225) BPIFC (ENSUMAG00000017216) FBXO7 (ENSUMAG00000017189) ENSUMAG00000017180 TIMP3 (ENSUMAG00000017174) ENSUMAG00000017170 LARGE1 (ENSUMAG00000017061) ISX (ENSUMAG00000017029) HMGXB4 (ENSUMAG00000017004) TOM1 (ENSUMAG00000016992) HMOX1 (ENSUMAG00000016982) MCM5 (ENSUMAG00000016836) RASD2 (ENSUMAG00000016806) American black bear MODERN SPECIES 1457 ABTB3 (ENSUAMG00000022867) #22 PWP1 (ENSUAMG00000022800) PRDM4 (ENSUAMG00000022796) ASCL4 (ENSUAMG00000022793) RTCB (ENSUAMG00000022792) BPIFC (ENSUAMG00000022790) FBXO7 (ENSUAMG00000022789) SYN3 (ENSUAMG00000022788) Giant Panda MODERN SPECIES 6 RAB40B (ENSAMEG00000001265) FN3KRP (ENSAMEG00000027527) FN3K (ENSAMEG00000001278) TBCD (ENSAMEG00000001295) ZNF750 (ENSAMEG00000001371) B3GNTL1 (ENSAMEG00000001376) ENSAMEG00000001381 ENSAMEG00000026294 ENSAMEG00000015999 POLR3B (ENSAMEG00000016022) RFX4 (ENSAMEG00000016059) RIC8B (ENSAMEG00000016082) TMEM263 (ENSAMEG00000002757) MTERF2 (ENSAMEG00000018572) #20 CRY1 (ENSAMEG00000002720) #21 ENSAMEG00000016220 #22 PWP1 (ENSAMEG00000016191) PRDM4 (ENSAMEG00000016174) ENSAMEG00000030999 ENSAMEG00000016152 ENSAMEG00000016146 FBXO7 (ENSAMEG00000016139) SYN3 (ENSAMEG00000016137) TIMP3 (ENSAMEG00000016132) LARGE1 (ENSAMEG00000016112) ISX (ENSAMEG00000001571) ENSAMEG00000026658 HMGXB4 (ENSAMEG00000001545) ENSAMEG00000026704 HMOX1 (ENSAMEG00000001468) MCM5 (ENSAMEG00000001421) Atlantogenata ANCESTRAL SPECIES 16 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Xenarthra ANCESTRAL SPECIES 525 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Armadillo MODERN SPECIES 4200 ABTB3 (ENSDNOG00000037413) #22 PWP1 (ENSDNOG00000019710) PRDM4 (ENSDNOG00000032478) ASCL4 (ENSDNOG00000012573) RTCB (ENSDNOG00000012425) FBXO7 (ENSDNOG00000025780) SYN3 (ENSDNOG00000007131) TIMP3 (ENSDNOG00000007763) Afrotheria ANCESTRAL SPECIES 8 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Afrotheria_a ANCESTRAL SPECIES 8 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000165530 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00390000006670 ENSGT00940000155415 ENSGT00940000159601 Hyrax MODERN SPECIES 3758 ABTB3 (ENSPCAG00000006300) #22 Elephant MODERN SPECIES 196 SLC41A2 (ENSLAFG00000012060) NOPCHAP1 (ENSLAFG00000011175) ALDH1L2 (ENSLAFG00000014160) WASHC4 (ENSLAFG00000014172) APPL2 (ENSLAFG00000014180) NUAK1 (ENSLAFG00000010298) CKAP4 (ENSLAFG00000002275) TCP11L2 (ENSLAFG00000030164) POLR3B (ENSLAFG00000001633) RFX4 (ENSLAFG00000014122) RIC8B (ENSLAFG00000005009) TMEM263 (ENSLAFG00000012097) MTERF2 (ENSLAFG00000011895) #20 CRY1 (ENSLAFG00000014082) #21 ENSLAFG00000027707 ENSLAFG00000014092 #22 PWP1 (ENSLAFG00000014100) PRDM4 (ENSLAFG00000001483) ASCL4 (ENSLAFG00000004655) RTCB (ENSLAFG00000002082) BPIFC (ENSLAFG00000002085) FBXO7 (ENSLAFG00000013837) SYN3 (ENSLAFG00000013844) TIMP3 (ENSLAFG00000013851) ENSLAFG00000031855 ENSLAFG00000025745 ENSLAFG00000032411 ENSLAFG00000030965 ENSLAFG00000029105 ENSLAFG00000029156 ENSLAFG00000029571 Tenrec MODERN SPECIES 4486 ABTB3 (ENSETEG00000008731) #22 Marsupialia ANCESTRAL SPECIES 11 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Opossum DUPLICATION Opossum MODERN SPECIES 7 ALDH1L2 (ENSMODG00000002071) WASHC4 (ENSMODG00000002024) APPL2 (ENSMODG00000001978) ENSMODG00000037198 NUAK1 (ENSMODG00000001926) ENSMODG00000001917 TCP11L2 (ENSMODG00000001909) POLR3B (ENSMODG00000001884) RFX4 (ENSMODG00000001661) RIC8B (ENSMODG00000001629) TMEM263 (ENSMODG00000001595) MTERF2 (ENSMODG00000001589) #20 ENSMODG00000027639 CRY1 (ENSMODG00000001579) #21 ENSMODG00000040575 #22 ENSMODG00000001559 #22 PWP1 (ENSMODG00000001471) PRDM4 (ENSMODG00000001448) ASCL4 (ENSMODG00000024943) RTCB (ENSMODG00000001414) BPIFC (ENSMODG00000001355) FBXO7 (ENSMODG00000001336) ENSMODG00000001320 TIMP3 (ENSMODG00000038536) ENSMODG00000047828 LARGE1 (ENSMODG00000001264) ENSMODG00000001249 HMGXB4 (ENSMODG00000001244) TOM1 (ENSMODG00000025453) ENSMODG00000001163 MCM5 (ENSMODG00000001152) Opossum MODERN SPECIES 7 ENSMODG00000002078 ALDH1L2 (ENSMODG00000002071) WASHC4 (ENSMODG00000002024) APPL2 (ENSMODG00000001978) ENSMODG00000037198 NUAK1 (ENSMODG00000001926) ENSMODG00000001917 TCP11L2 (ENSMODG00000001909) POLR3B (ENSMODG00000001884) RFX4 (ENSMODG00000001661) RIC8B (ENSMODG00000001629) TMEM263 (ENSMODG00000001595) MTERF2 (ENSMODG00000001589) #20 ENSMODG00000027639 CRY1 (ENSMODG00000001579) #21 ENSMODG00000040575 #22 ENSMODG00000001559 #22 PWP1 (ENSMODG00000001471) PRDM4 (ENSMODG00000001448) ASCL4 (ENSMODG00000024943) RTCB (ENSMODG00000001414) BPIFC (ENSMODG00000001355) FBXO7 (ENSMODG00000001336) ENSMODG00000001320 TIMP3 (ENSMODG00000038536) ENSMODG00000047828 LARGE1 (ENSMODG00000001264) ENSMODG00000001249 HMGXB4 (ENSMODG00000001244) TOM1 (ENSMODG00000025453) ENSMODG00000001163 Marsupialia_b ANCESTRAL SPECIES 13 ENSGT00950000183042.a.b ENSGT00390000000376 ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Diprotodontia ANCESTRAL SPECIES 8 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b ENSGT01050000244824.G Diprotodontia_a ANCESTRAL SPECIES 8 ENSGT00940000159167 ENSGT00950000183042.a.b ENSGT00940000158018 ENSGT00390000002524 ENSGT00940000158319 ENSGT00610000087444 ENSGT00940000157255 ENSGT00390000015968 ENSGT00940000157835 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00390000013899.a.a.a ENSGT00530000063817.b #20 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00390000017324 ENSGT00940000156443 ENSGT00940000162902 ENSGT00940000155911 ENSGT01100000263545.a.b.c.a ENSGT00900000143932 ENSGT00390000006670 ENSGT00940000159601 ENSGT00940000155415 ENSGT00940000158497 ENSGT00940000161702 ENSGT00390000012436 ENSGT00940000156865 ENSGT00390000017673.b.c ENSGT01050000244824.G Common wonbat MODERN SPECIES 135 CHST11 (ENSVURG00010005449) SLC41A2 (ENSVURG00010005434) ALDH1L2 (ENSVURG00010005390) WASHC4 (ENSVURG00010005369) APPL2 (ENSVURG00010005325) C12orf75 (ENSVURG00010005309) NUAK1 (ENSVURG00010005299) CKAP4 (ENSVURG00010005283) TCP11L2 (ENSVURG00010005275) POLR3B (ENSVURG00010005226) RFX4 (ENSVURG00010005169) RIC8B (ENSVURG00010005139) ENSVURG00010005121 MTERF2 (ENSVURG00010005107) #20 CRY1 (ENSVURG00010005080) #21 ENSVURG00010005066 #22 PWP1 (ENSVURG00010005047) PRDM4 (ENSVURG00010005001) ENSVURG00010004985 RTCB (ENSVURG00010004963) ENSVURG00010004947 ENSVURG00010004935 FBXO7 (ENSVURG00010004910) TIMP3 (ENSVURG00010004875) ENSVURG00010004868 LARGE1 (ENSVURG00010004822) HMGXB4 (ENSVURG00010004757) TOM1 (ENSVURG00010004714) ENSVURG00010004705 MCM5 (ENSVURG00010004674) RASD2 (ENSVURG00010004644) koala MODERN SPECIES 13 ENSPCIG00000014881 SLC41A2 (ENSPCIG00000025305) ALDH1L2 (ENSPCIG00000025304) WASHC4 (ENSPCIG00000025302) APPL2 (ENSPCIG00000014537) ENSPCIG00000032714 NUAK1 (ENSPCIG00000031256) ENSPCIG00000009514 TCP11L2 (ENSPCIG00000009513) POLR3B (ENSPCIG00000009510) RFX4 (ENSPCIG00000009503) RIC8B (ENSPCIG00000009494) ENSPCIG00000009487 MTERF2 (ENSPCIG00000009486) #20 CRY1 (ENSPCIG00000009482) #21 ENSPCIG00000035749 #22 PWP1 (ENSPCIG00000009477) PRDM4 (ENSPCIG00000009471) RTCB (ENSPCIG00000009467) BPIFC (ENSPCIG00000009463) FBXO7 (ENSPCIG00000009460) TIMP3 (ENSPCIG00000034646) ENSPCIG00000009454 LARGE1 (ENSPCIG00000009086) ENSPCIG00000021532 ENSPCIG00000031063 HMGXB4 (ENSPCIG00000021536) TOM1 (ENSPCIG00000021539) ENSPCIG00000001484 MCM5 (ENSPCIG00000001573) RASD2 (ENSPCIG00000021543) Wallaby MODERN SPECIES 4217 ENSMEUG00000009803 #22 Tasmanian devil MODERN SPECIES 4 ENSSHAG00000029209 ALDH1L2 (ENSSHAG00000008627) WASHC4 (ENSSHAG00000009337) APPL2 (ENSSHAG00000009765) ENSSHAG00000026512 NUAK1 (ENSSHAG00000028274) CKAP4 (ENSSHAG00000011086) TCP11L2 (ENSSHAG00000011718) POLR3B (ENSSHAG00000012005) RFX4 (ENSSHAG00000013027) RIC8B (ENSSHAG00000013536) ENSSHAG00000030393 MTERF2 (ENSSHAG00000028781) #20 CRY1 (ENSSHAG00000014266) #21 ENSSHAG00000022333 ENSSHAG00000015679 #22 PWP1 (ENSSHAG00000016054) ENSSHAG00000030957 ENSSHAG00000030732 ENSSHAG00000016197 ENSSHAG00000016277 BPIFC (ENSSHAG00000016331) FBXO7 (ENSSHAG00000020844) TIMP3 (ENSSHAG00000021624) LARGE1 (ENSSHAG00000017614) ENSSHAG00000030404 HMGXB4 (ENSSHAG00000018891) TOM1 (ENSSHAG00000022950) HMOX1 (ENSSHAG00000018910) MCM5 (ENSSHAG00000018914) RASD2 (ENSSHAG00000028224) Platypus MODERN SPECIES 5 SLC41A2 (ENSOANG00000005544) ENSOANG00000001805 ALDH1L2 (ENSOANG00000001804) WASHC4 (ENSOANG00000005543) APPL2 (ENSOANG00000005542) ENSOANG00000042328 NUAK1 (ENSOANG00000005541) CKAP4 (ENSOANG00000005540) TCP11L2 (ENSOANG00000005538) POLR3B (ENSOANG00000005536) RFX4 (ENSOANG00000005534) RIC8B (ENSOANG00000005533) TMEM263 (ENSOANG00000048951) MTERF2 (ENSOANG00000005531) #20 CRY1 (ENSOANG00000005530) #21 ABTB3 (ENSOANG00000005529) #22 PWP1 (ENSOANG00000005528) PRDM4 (ENSOANG00000005526) ENSOANG00000005525 RTCB (ENSOANG00000005524) BPIFC (ENSOANG00000005523) FBXO7 (ENSOANG00000005522) SYN3 (ENSOANG00000005520) TIMP3 (ENSOANG00000005518) LARGE1 (ENSOANG00000005515) HMGXB4 (ENSOANG00000010868) TOM1 (ENSOANG00000010869) HMOX1 (ENSOANG00000010871) MCM5 (ENSOANG00000010872) RASD2 (ENSOANG00000010873) MB (ENSOANG00000010874) Anura ANCESTRAL SPECIES 69 ENSGT00940000154572 ENSGT00600000084428.b ENSGT00390000015968 ENSGT00500000045001 ENSGT00950000183132.A ENSGT01050000244879.b.a.b.a ENSGT00390000014700.a ENSGT00940000165765 ENSGT00390000013899.a.a ENSGT00940000164185 ENSGT00530000063817.b #20 ENSGT00940000165780 ENSGT00940000155455 #21 ENSGT00940000156419 #22 ENSGT00940000153525 ENSGT00390000017324 ENSGT00940000158225 #34 ENSGT00940000161249 ENSGT00940000155867 ENSGT00440000033504.B ENSGT00940000156857 ENSGT00940000155180.b ENSGT00940000163946 ENSGT00940000160821 ENSGT00940000157821 ENSGT00950000182914.b ENSGT00940000153414.B ENSGT00940000159363 ENSGT00950000183042.a.a Frog MODERN SPECIES 3 ENSXETG00000038015 ikbip (ENSXETG00000005720) polr3b (ENSXETG00000005721) rfx4 (ENSXETG00000014145) ENSXETG00000048537 ric8b (ENSXETG00000014801) sirt3.2 (ENSXETG00000014800) tmem263 (ENSXETG00000037976) ENSXETG00000014798 mterf2 (ENSXETG00000014797) #20 dhfr (ENSXETG00000036795) cry1 (ENSXETG00000016951) #21 ENSXETG00000049103 ENSXETG00000037600 mrpl38 (ENSXETG00000016963) btbd11 (ENSXETG00000016964) #22 ldhb (ENSXETG00000016974) pwp1 (ENSXETG00000016975) tspan9 (ENSXETG00000042032) #34 ENSXETG00000041672 ENSXETG00000042864 prmt8 (ENSXETG00000016651) ENSXETG00000041800 ENSXETG00000033749 ENSXETG00000048544 ENSXETG00000045603 timd4 (ENSXETG00000046998) ENSXETG00000046554 med7 (ENSXETG00000001505) itk (ENSXETG00000033235) cyfip2 (ENSXETG00000001502) Leishan spiny toad MODERN SPECIES 6 ENSLLEG00000025319 IKBIP (ENSLLEG00000025350) POLR3B (ENSLLEG00000025457) RFX4 (ENSLLEG00000026021) ENSLLEG00000026569 ENSLLEG00000026593 RIC8B (ENSLLEG00000026614) ENSLLEG00000026937 ENSLLEG00000027090 TMEM263 (ENSLLEG00000027110) ENSLLEG00000004797 ENSLLEG00000004801 MTERF2 (ENSLLEG00000004808) #20 ENSLLEG00000004820 CRY1 (ENSLLEG00000004836) #21 ABTB3 (ENSLLEG00000004901) #22 ENSLLEG00000004914 LDHB (ENSLLEG00000004922) PWP1 (ENSLLEG00000004953) TSPAN9 (ENSLLEG00000005000) #34 ENSLLEG00000005026 ENSLLEG00000005032 ENSLLEG00000005046 ENSLLEG00000005076 PRMT8 (ENSLLEG00000005101) ENSLLEG00000005178 CRACR2A (ENSLLEG00000005196) ENSLLEG00000005243 PARP11 (ENSLLEG00000005263) ENSLLEG00000005322 CCND2 (ENSLLEG00000005348) Coelacanth DUPLICATION Coelacanth MODERN SPECIES 261 si:ch73-62b13.1 (ENSLACG00000002641) ENSLACG00000006473 zgc:153031 (ENSLACG00000007419) CRY1 (ENSLACG00000008174) #21 ENSLACG00000009924 ABTB3 (ENSLACG00000012005) #22 PWP1 (ENSLACG00000013058) ENSLACG00000013245 TSPAN9 (ENSLACG00000013904) #34 TSPAN11 (ENSLACG00000015678) PRMT8 (ENSLACG00000016345) ENSLACG00000016518 PARP11 (ENSLACG00000016902) CCND2 (ENSLACG00000017913) TIGAR (ENSLACG00000017982) FGF23 (ENSLACG00000018023) FGF6 (ENSLACG00000018038) zgc:77158 (ENSLACG00000018057) C12orf4 (ENSLACG00000018127) RAD51AP1 (ENSLACG00000018171) DYRK4 (ENSLACG00000018269) Coelacanth MODERN SPECIES 237 AP4B1 (ENSLACG00000015784) HIPK1 (ENSLACG00000015517) ENSLACG00000015407 #8 PPFIA4 (ENSLACG00000014912) ##8 MYOG (ENSLACG00000014874) ##11 ENSLACG00000014521 ADORA1 (ENSLACG00000014019) MYBPH (ENSLACG00000013194) CEPT1 (ENSLACG00000013021) DRAM2 (ENSLACG00000022493) DENND2D (ENSLACG00000012604) cry4 (ENSLACG00000012369) LRIF1 (ENSLACG00000011605) ENSLACG00000022539 cry3b (ENSLACG00000010538) ENSLACG00000009938 #22 ENSLACG00000009871 ENSLACG00000009583 ENSLACG00000009026 CDKN1A (ENSLACG00000008728) SRSF3 (ENSLACG00000008131) STK38 (ENSLACG00000007548) KCTD20 (ENSLACG00000006905) zgc:194242 (ENSLACG00000006748) ETV7 (ENSLACG00000006370) rplp2 (ENSLACG00000006058) ENSLACG00000005569 KCNA3 (ENSLACG00000004165) KCNA2 (ENSLACG00000003393) KCNA10 (ENSLACG00000001741) Elephant shark MODERN SPECIES 1524 ENSCMIG00000012811 #18 ENSCMIG00000012816 #18 ENSCMIG00000013026 ##17 REP15 (ENSCMIG00000013710) cyb5r3 (ENSCMIG00000013728) #16 endouc (ENSCMIG00000013822) POLR3B (ENSCMIG00000013840) rfx4 (ENSCMIG00000013889) ric8b (ENSCMIG00000013934) ENSCMIG00000013950 tmem263 (ENSCMIG00000013952) si:ch73-62b13.1 (ENSCMIG00000013955) mterf2 (ENSCMIG00000013961) #20 ENSCMIG00000013964 cry1b (ENSCMIG00000013991) #21 btbd11a (ENSCMIG00000014069) #22 pwp1 (ENSCMIG00000014122) ENSCMIG00000014140 tspan9b (ENSCMIG00000014143) #34 tspan11 (ENSCMIG00000014144) ENSCMIG00000014146 ENSCMIG00000014174 CRACR2A (ENSCMIG00000014352) PARP11 (ENSCMIG00000014355)