Murinae	ANCESTRAL SPECIES	4	ENSGT00940000160282 #7	ENSGT00950000183062.a.a.a #8	ENSGT00940000162859 #9	ENSGT00940000158065 #10	ENSGT00390000007605 #11	ENSGT00390000013995.b.a #12	ENSGT00940000162026 #13	ENSGT00890000139436.A.a #14	ENSGT00940000155865 #15	ENSGT00940000159892 #16	ENSGT00730000111641 #17	ENSGT00940000156326 #18	ENSGT01020000230354.A.a #19	ENSGT00940000159731 #20	ENSGT00390000008631.a #21	ENSGT00550000074831 #22	ENSGT00390000010697 #23	ENSGT00940000156493 #24	ENSGT00940000159882 #25	ENSGT00440000035348.l #26	ENSGT00940000162607 #27	ENSGT00390000010170.a.a #28	ENSGT00940000158653 #29	ENSGT00940000158502 #30	ENSGT00550000074950 #31	ENSGT00940000155820 #32	ENSGT00940000156409 #33	ENSGT00940000153629.a.a #34	ENSGT00390000016951 #35	ENSGT00390000007159 #36	ENSGT00640000091558 #37
Mus	ANCESTRAL SPECIES	12	ENSGT00940000160282 #7	ENSGT00950000183062.a.a.a #8	ENSGT00940000162859 #9	ENSGT00940000158065 #10	ENSGT00390000007605 #11	ENSGT00390000013995.b.a #12	ENSGT00940000162026 #13	ENSGT00890000139436.A.a #14	ENSGT00940000155865 #15	ENSGT00940000159892 #16	ENSGT00730000111641 #17	ENSGT00940000156326 #18	ENSGT01020000230354.A.a #19	ENSGT00940000159731 #20	ENSGT00390000008631.a #21	ENSGT00550000074831 #22	ENSGT00390000010697 #23	ENSGT00940000156493 #24	ENSGT00940000159882 #25	ENSGT00440000035348.l #26	ENSGT00940000162607 #27	ENSGT00390000010170.a.a #28	ENSGT00940000158653 #29	ENSGT00940000158502 #30	ENSGT00550000074950 #31	ENSGT00940000155820 #32	ENSGT00940000156409 #33	ENSGT00940000153629.a.a #34	ENSGT00390000016951 #35	ENSGT00390000007159 #36	ENSGT00640000091558 #37
Mus_A	ANCESTRAL SPECIES	7	ENSGT00940000160282 #7	ENSGT00950000183062.a.a.a #8	ENSGT00940000162859 #9	ENSGT00940000158065 #10	ENSGT00390000007605 #11	ENSGT00390000013995.b.a #12	ENSGT00940000162026 #13	ENSGT00890000139436.A.a #14	ENSGT00940000155865 #15	ENSGT00940000159892 #16	ENSGT00730000111641 #17	ENSGT00940000156326 #18	ENSGT01020000230354.A.a #19	ENSGT00940000159731 #20	ENSGT00390000008631.a.e #21	ENSGT00550000074831 #22	ENSGT00390000010697 #23	ENSGT00940000156493 #24	ENSGT00940000159882 #25	ENSGT00440000035348.l #26	ENSGT00940000162607 #27	ENSGT00390000010170.a.a #28	ENSGT00940000158653 #29	ENSGT00940000158502 #30	ENSGT00550000074950 #31	ENSGT00940000155820 #32	ENSGT00940000156409 #33	ENSGT00940000153629.a.a #34	ENSGT00390000016951 #35	ENSGT00390000007159 #36	ENSGT00640000091558 #37
Mus_B	ANCESTRAL SPECIES	15	ENSGT00940000160282 #7	ENSGT00950000183062.a.a.a #8	ENSGT00940000162859 #9	ENSGT00940000158065 #10	ENSGT00390000007605 #11	ENSGT00390000013995.b.a #12	ENSGT00940000162026 #13	ENSGT00890000139436.A.a #14	ENSGT00940000155865 #15	ENSGT00940000159892 #16	ENSGT00730000111641 #17	ENSGT00940000156326 #18	ENSGT01020000230354.A.a #19	ENSGT00940000159731 #20	ENSGT00390000008631.a.e #21	ENSGT00550000074831 #22	ENSGT00390000010697 #23	ENSGT00940000156493 #24	ENSGT00940000159882 #25	ENSGT00440000035348.l #26	ENSGT00940000162607 #27	ENSGT00390000010170.a.a #28	ENSGT00940000158653 #29	ENSGT00940000158502 #30	ENSGT00550000074950 #31	ENSGT00940000155820 #32	ENSGT00940000156409 #33	ENSGT00940000153629.a.a #34	ENSGT00390000016951 #35	ENSGT00390000007159 #36	ENSGT00640000091558 #37
Mouse	MODERN SPECIES	15	Cntn3 (ENSMUSG00000030075) #7	Pdzrn3 (ENSMUSG00000035357) #8	Ppp4r2 (ENSMUSG00000052144) #9	Gxylt2 (ENSMUSG00000030074) #10	Shq1 (ENSMUSG00000035378) #11	Rybp (ENSMUSG00000072872) #12	Prok2 (ENSMUSG00000030069) #13	Gpr27 (ENSMUSG00000072875) #14	Eif4e3 (ENSMUSG00000093661) #15	Foxp1 (ENSMUSG00000030067) #16	Mdfic2 (ENSMUSG00000090667) #17	Mitf (ENSMUSG00000035158) #18	Frmd4b (ENSMUSG00000030064) #19	Lmod3 (ENSMUSG00000044086) #20	Arl6ip5 (ENSMUSG00000035199) #21	Uba3 (ENSMUSG00000030061) #22	Tmf1 (ENSMUSG00000030059) #23	Eogt (ENSMUSG00000035245) #24	Tafa4 (ENSMUSG00000046500) #25	Nup50l (ENSMUSG00000072878) #26	Tafa1 (ENSMUSG00000059187) #27	Suclg2 (ENSMUSG00000061838) #28	Kbtbd8 (ENSMUSG00000030031) #29	Lrig1 (ENSMUSG00000030029) #30	Slc25a26 (ENSMUSG00000045100) #31	Magi1 (ENSMUSG00000045095) #32	Adamts9 (ENSMUSG00000030022) #33	Prickle2 (ENSMUSG00000030020) #34	Trh (ENSMUSG00000005892) #35	Rbsn (ENSMUSG00000014550) #36	Mrps25 (ENSMUSG00000014551) #37
Mus_C	ANCESTRAL SPECIES	18	ENSGT00940000160282 #7	ENSGT00950000183062.a.a.a #8	ENSGT00940000162859 #9	ENSGT00940000158065 #10	ENSGT00390000007605 #11	ENSGT00390000013995.b.a #12	ENSGT00940000162026 #13	ENSGT00890000139436.A.a #14	ENSGT00940000155865 #15	ENSGT00940000159892 #16	ENSGT00730000111641 #17	ENSGT00940000156326 #18	ENSGT01020000230354.A.a #19	ENSGT00940000159731 #20	ENSGT00390000008631.a.e #21	ENSGT00550000074831 #22	ENSGT00390000010697 #23	ENSGT00940000156493 #24	ENSGT00940000159882 #25	ENSGT00440000035348.l #26	ENSGT00940000162607 #27	ENSGT00390000010170.a.a #28	ENSGT00940000158653 #29	ENSGT00940000158502 #30	ENSGT00550000074950 #31	ENSGT00940000155820 #32	ENSGT00860000136051	ENSGT00860000136292	ENSGT00940000156409 #33	ENSGT00940000153629.a.a #34	ENSGT00390000016951 #35
Steppe mouse	MODERN SPECIES	3014															ENSMSIG00000031617 ##21	Uba3 (ENSMSIG00000031611) #22	Tmf1 (ENSMSIG00000031609) #23	Eogt (ENSMSIG00000031608) #24	Tafa4 (ENSMSIG00000031606) #25	Nup50l (ENSMSIG00000031603) #26	Tafa1 (ENSMSIG00000031602) #27	Suclg2 (ENSMSIG00000031599) #28
spretus	MODERN SPECIES	15	Pdzrn3 (MGP_SPRETEiJ_G0029720) #8	Ppp4r2 (MGP_SPRETEiJ_G0029719) #9	Gxylt2 (MGP_SPRETEiJ_G0029718) #10	Shq1 (MGP_SPRETEiJ_G0029717) #11	Rybp (MGP_SPRETEiJ_G0029716) #12	Prok2 (MGP_SPRETEiJ_G0029715) #13	Gpr27 (MGP_SPRETEiJ_G0029714) #14	Eif4e3 (MGP_SPRETEiJ_G0029713) #15	MGP_SPRETEiJ_G0029712	Foxp1 (MGP_SPRETEiJ_G0029711) #16	Mdfic2 (MGP_SPRETEiJ_G0029710) #17	Mitf (MGP_SPRETEiJ_G0029709) #18	Frmd4b (MGP_SPRETEiJ_G0029708) #19	Lmod3 (MGP_SPRETEiJ_G0029707) #20	Arl6ip5 (MGP_SPRETEiJ_G0029706) #21	Uba3 (MGP_SPRETEiJ_G0029705) #22	Tmf1 (MGP_SPRETEiJ_G0029704) #23	Eogt (MGP_SPRETEiJ_G0029703) #24	Tafa4 (MGP_SPRETEiJ_G0029702) #25	Nup50l (MGP_SPRETEiJ_G0029701) #26	Tafa1 (MGP_SPRETEiJ_G0029700) #27	Suclg2 (MGP_SPRETEiJ_G0029699) #28	Kbtbd8 (MGP_SPRETEiJ_G0029698) #29	Lrig1 (MGP_SPRETEiJ_G0029697) #30	Slc25a26 (MGP_SPRETEiJ_G0029696) #31	Magi1 (MGP_SPRETEiJ_G0029695) #32	MGP_SPRETEiJ_G0029694	MGP_SPRETEiJ_G0029693	Adamts9 (MGP_SPRETEiJ_G0029692) #33	Prickle2 (MGP_SPRETEiJ_G0029691) #34	Trh (MGP_SPRETEiJ_G0029690) #35
Shrew mouse	MODERN SPECIES	11	Pdzrn3 (MGP_PahariEiJ_G0022443) #8	Ppp4r2 (MGP_PahariEiJ_G0022442) #9	Gxylt2 (MGP_PahariEiJ_G0022441) #10	Shq1 (MGP_PahariEiJ_G0022440) #11	Rybp (MGP_PahariEiJ_G0022439) #12	Prok2 (MGP_PahariEiJ_G0022438) #13	Gpr27 (MGP_PahariEiJ_G0022437) #14	Eif4e3 (MGP_PahariEiJ_G0022436) #15	MGP_PahariEiJ_G0022435	Foxp1 (MGP_PahariEiJ_G0022434) #16	Mdfic2 (MGP_PahariEiJ_G0022433) #17	Mitf (MGP_PahariEiJ_G0022432) #18	Frmd4b (MGP_PahariEiJ_G0022431) #19	Lmod3 (MGP_PahariEiJ_G0022430) #20	Arl6ip5 (MGP_PahariEiJ_G0022429) #21	Uba3 (MGP_PahariEiJ_G0022428) #22	Tmf1 (MGP_PahariEiJ_G0022427) #23	Eogt (MGP_PahariEiJ_G0022426) #24	Tafa4 (MGP_PahariEiJ_G0022425) #25	Nup50l (MGP_PahariEiJ_G0022424) #26	Tafa1 (MGP_PahariEiJ_G0022423) #27	Suclg2 (MGP_PahariEiJ_G0022422) #28	Kbtbd8 (MGP_PahariEiJ_G0022421) #29	Lrig1 (MGP_PahariEiJ_G0022420) #30	Slc25a26 (MGP_PahariEiJ_G0022419) #31	Magi1 (MGP_PahariEiJ_G0022418) #32	MGP_PahariEiJ_G0022417	MGP_PahariEiJ_G0022416	MGP_PahariEiJ_G0022415	MGP_PahariEiJ_G0022414	Adamts9 (MGP_PahariEiJ_G0022413) #33
Rat	DUPLICATION
Rat	MODERN SPECIES	14	Gxylt2 (ENSRNOG00000005621) #10	Actg1-ps9 (ENSRNOG00000062691)	Shq1 (ENSRNOG00000005433) #11	LOC120102351 (ENSRNOG00000005353) #12	LOC120102174 (ENSRNOG00000033673)	Prok2 (ENSRNOG00000010898) #13	Ier3ip1-ps1 (ENSRNOG00000030004)	Gpr27 (ENSRNOG00000010880) #14	Eif4e3 (ENSRNOG00000010301) #15	Foxp1 (ENSRNOG00000009184) #16	Mdfic2 (ENSRNOG00000064294) #17	Mitf (ENSRNOG00000008658) #18	Frmd4b (ENSRNOG00000007764) #19	Lmod3 (ENSRNOG00000032443) #20	Arl6ip5 (ENSRNOG00000006818) #21	Uba3 (ENSRNOG00000006221) #22	Tmf1 (ENSRNOG00000056462) #23	Eogt (ENSRNOG00000024533) #24	Tafa4 (ENSRNOG00000005830) #25	Nup50-ps1 (ENSRNOG00000024560) #26	LOC108353456 (ENSRNOG00000070575) #27	Suclg2 (ENSRNOG00000005686) #28	Kbtbd8 (ENSRNOG00000013390) #29	AABR07031972.1 (ENSRNOG00000046899)	LOC687056 (ENSRNOG00000065327)	Lrig1 (ENSRNOG00000012952) #30	Slc25a26 (ENSRNOG00000012831) #31	ENSRNOG00000071067	LOC100361920 (ENSRNOG00000052174)	Magi1 (ENSRNOG00000022060) #32	ENSRNOG00000064824
Rat	MODERN SPECIES	3	Cers4 (ENSRNOG00000001072)	Dppa1-ps1 (ENSRNOG00000028544)	Higd2al1 (ENSRNOG00000001071)	Ccl25 (ENSRNOG00000028531)	Elavl1 (ENSRNOG00000001069)	Timm44 (ENSRNOG00000001058)	Snapc2 (ENSRNOG00000001056)	Tgfbr3l (ENSRNOG00000050573)	Map2k7 (ENSRNOG00000001047)	Lrrc8e (ENSRNOG00000028460)	Prr36 (ENSRNOG00000028892)	Evi5l (ENSRNOG00000001034)	Cd209f (ENSRNOG00000042317)	LOC100363064 (ENSRNOG00000001027)	RGD1564571 (ENSRNOG00000066613)	Uba3-ps2 (ENSRNOG00000054096) #22	LOC102554944 (ENSRNOG00000065641)	ENSRNOG00000069757	LOC688858 (ENSRNOG00000062811)	ENSRNOG00000066133	LOC100363914 (ENSRNOG00000069254)	Cd209c (ENSRNOG00000042807)	Clec4m (ENSRNOG00000029881)	Cd209d (ENSRNOG00000001017)	Cd209e (ENSRNOG00000028803)	Cd209a (ENSRNOG00000040128)	Clec4g (ENSRNOG00000054013)	Fcer2 (ENSRNOG00000001005)	Trappc5 (ENSRNOG00000001003)	Mcemp1 (ENSRNOG00000028259)	Retn (ENSRNOG00000001001)