Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000170307 #9	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT00880000138402	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00940000154716.hc ##16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000170307 #9	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000170307 #9	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Pomacentridae_A	ANCESTRAL SPECIES	37	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000170307 #9	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT01100000264401 #31	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37
Amphiprion	ANCESTRAL SPECIES	91								ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00940000162871.i	ENSGT00940000165795.d #30	ENSGT01100000264401 #31	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37
Orange clownfish	MODERN SPECIES	8	trim46b (ENSAPEG00000008418) #32	ENSAPEG00000008465 #31	s100a10a (ENSAPEG00000008476) #30	ENSAPEG00000008482	snx27a (ENSAPEG00000008493) #28	chrna11 (ENSAPEG00000008561) #27	ENSAPEG00000008592 #27	clk2a (ENSAPEG00000008626) #14	cers2a (ENSAPEG00000008672) #15	celf3a (ENSAPEG00000008728) #16	rprd2a (ENSAPEG00000008782) #17	ciarta (ENSAPEG00000008798) #18	mrps21 (ENSAPEG00000008831) #19	crabp2b (ENSAPEG00000008837) #20	scamp3 (ENSAPEG00000008897) #21	ENSAPEG00000008910 #22	ash1l (ENSAPEG00000008936) #23	ENSAPEG00000008974 #25	ENSAPEG00000008994 #26	scamp3 (ENSAPEG00000009017) #21	crabp2b (ENSAPEG00000009060) #20	mrps21 (ENSAPEG00000009088) #19	ciarta (ENSAPEG00000009095) #18	ENSAPEG00000009175 #13	dnajc8 (ENSAPEG00000009128) #12	hnrnpr (ENSAPEG00000009187) #11	ENSAPEG00000009230 #10	ENSAPEG00000009243 #9	ADGRB1 (ENSAPEG00000009268) #8	ENSAPEG00000009369 #7	SLC4A7 (ENSAPEG00000009392)
Clown anemonefish	MODERN SPECIES	1065						TYMP (ENSAOCG00000013905)	lsm8 (ENSAOCG00000013926)	grip1 (ENSAOCG00000014019)	ENSAOCG00000000892	cand1 (ENSAOCG00000000921)	ENSAOCG00000014188 #17	ciarta (ENSAOCG00000014201) #18	mrps21 (ENSAOCG00000014214) #19	crabp2b (ENSAOCG00000014237) #20	scamp3 (ENSAOCG00000014254) #21	ENSAOCG00000014280 #22	ash1l (ENSAOCG00000014299) #23	ENSAOCG00000014327	myof (ENSAOCG00000014674)	aarsd1 (ENSAOCG00000014735)	ptges3l (ENSAOCG00000014828)	kat7b (ENSAOCG00000014886)	ENSAOCG00000014899	dlx4b (ENSAOCG00000014952)	dlx3b (ENSAOCG00000014963)	itga3b (ENSAOCG00000002539)	ENSAOCG00000015119	ENSAOCG00000015178	inab (ENSAOCG00000001059)	atp5md (ENSAOCG00000015202)	taf5 (ENSAOCG00000001060)
Spiny chromis	MODERN SPECIES	392	SLC4A7 (ENSAPOG00000006779)	HERPUD2 (ENSAPOG00000006655) #7	ADGRB1 (ENSAPOG00000006630) #8	ENSAPOG00000006386 #10	hnrnpr (ENSAPOG00000006236) #11	dnajc8 (ENSAPOG00000000170) #12	ENSAPOG00000006141 #13	clk2a (ENSAPOG00000006118) #14	cers2a (ENSAPOG00000000162) #15	celf3a (ENSAPOG00000006015) #16	rprd2a (ENSAPOG00000005936) #17	ciarta (ENSAPOG00000001032) #18	mrps21 (ENSAPOG00000005886) #19	crabp2b (ENSAPOG00000005873) #20	scamp3 (ENSAPOG00000005851) #21	ENSAPOG00000005830 #22	ash1l (ENSAPOG00000005745) #23	lrrc71 (ENSAPOG00000005692) #24	ENSAPOG00000005670 #25	ENSAPOG00000005636 ##26	chrna11 (ENSAPOG00000005631) #27	snx27a (ENSAPOG00000005588) #28	icn (ENSAPOG00000005546) #29	s100a10a (ENSAPOG00000005537) #30	ENSAPOG00000005528	ENSAPOG00000005518 #31	trim46b (ENSAPOG00000005472) #32	dpm3 (ENSAPOG00000005415) #33	efna1a (ENSAPOG00000005375) #34
Bicolor damselfish	MODERN SPECIES	242	SLC4A7 (ENSSPAG00000003896)	HERPUD2 (ENSSPAG00000003878) #7	ADGRB1 (ENSSPAG00000003823) #8	ENSSPAG00000003800 #10	hnrnpr (ENSSPAG00000003788) #11	dnajc8 (ENSSPAG00000003762) #12	ENSSPAG00000003731 #13	clk2a (ENSSPAG00000003707) #14	cers2a (ENSSPAG00000003653) #15	celf3a (ENSSPAG00000003615) #16	rprd2a (ENSSPAG00000003596) #17	ciarta (ENSSPAG00000003560) #18	mrps21 (ENSSPAG00000003551) #19	crabp2b (ENSSPAG00000003533) #20	scamp3 (ENSSPAG00000003521) #21	RNF115 (ENSSPAG00000003481) #22	ash1l (ENSSPAG00000003361) #23	lrrc71 (ENSSPAG00000003318) #24	ENSSPAG00000003305 #25	ENSSPAG00000002752 #26	chrna11 (ENSSPAG00000002685) #27	snx27a (ENSSPAG00000002624) #28	ENSSPAG00000002612	s100a10a (ENSSPAG00000002605) #30
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00940000157045.b	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00940000154716.hc ##16	ENSGT00940000177218	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Nile tilapia	MODERN SPECIES	13	HERPUD2 (ENSONIG00000019688) #7	ENSONIG00000032661	ADGRB1 (ENSONIG00000019689) #8	ENSONIG00000019691 #10	hnrnpr (ENSONIG00000019692) #11	dnajc8 (ENSONIG00000019696) #12	ENSONIG00000036389 #13	clk2a (ENSONIG00000019698) #14	cers2a (ENSONIG00000019701) #15	celf3a (ENSONIG00000019703) #16	rprd2a (ENSONIG00000019704) #17	ciarta (ENSONIG00000019706) #18	mrps21 (ENSONIG00000031832) #19	crabp2b (ENSONIG00000019709) #20	scamp3 (ENSONIG00000019710) #21	ENSONIG00000019713 #22	ash1l (ENSONIG00000019716) #23	lrrc71 (ENSONIG00000028356) #24	ENSONIG00000019717 #26	chrna11 (ENSONIG00000019719) #27	snx27a (ENSONIG00000019721) #28	ENSONIG00000038772 #29	ENSONIG00000028947 #29	s100a10a (ENSONIG00000031982) #30	trim46b (ENSONIG00000019724) #32	dpm3 (ENSONIG00000027309) #33	efna1a (ENSONIG00000038657) #34	ENSONIG00000032139 #35	cks1b (ENSONIG00000027098) #36	ENSONIG00000019730 #37	ENSONIG00000032250
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00940000154716.hc ##16	ENSGT00940000177218	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000017671.a.a #7	ENSGT01030000234973	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Burton s mouthbrooder	MODERN SPECIES	357	SLC4A7 (ENSHBUG00000019916)	HERPUD2 (ENSHBUG00000019940) #7	ADGRB1 (ENSHBUG00000019965) #8	ENSHBUG00000019981 #10	hnrnpr (ENSHBUG00000019998) #11	dnajc8 (ENSHBUG00000020035) #12	ENSHBUG00000020068 #13	clk2a (ENSHBUG00000020081) #14	cers2a (ENSHBUG00000020099) #15	celf3a (ENSHBUG00000001061) #16	rprd2a (ENSHBUG00000020156) #17	ciarta (ENSHBUG00000020170) #18	mrps21 (ENSHBUG00000020177) #19	crabp2b (ENSHBUG00000020191) #20	scamp3 (ENSHBUG00000000613) #21	ENSHBUG00000000618 #22	ash1l (ENSHBUG00000020326) #23	lrrc71 (ENSHBUG00000020371) #24	ENSHBUG00000020403 ##25	ENSHBUG00000020523 #26	chrna11 (ENSHBUG00000020580) #27	snx27a (ENSHBUG00000000631) #28	ENSHBUG00000020641 #29	ENSHBUG00000020643 #29	s100a10a (ENSHBUG00000020650) #30	trim46b (ENSHBUG00000020692) #32	dpm3 (ENSHBUG00000020711) #33	efna1a (ENSHBUG00000020735) #34	ENSHBUG00000020740 #35	cks1b (ENSHBUG00000020757) #36	ENSHBUG00000020772 #37
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000017671.a.a #7	ENSGT01030000234973	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000017671.a.a #7	ENSGT01030000234973	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a	ENSGT00940000168219
Zebra mbuna	MODERN SPECIES	1104	HERPUD2 (ENSMZEG00005026483) #7	ENSMZEG00005026485	ADGRB1 (ENSMZEG00005026487) #8	ENSMZEG00005026488 #10	hnrnpr (ENSMZEG00005026489) #11	dnajc8 (ENSMZEG00005026491) #12	ENSMZEG00005026493 #13	clk2a (ENSMZEG00005026495) #14	cers2a (ENSMZEG00005026498) #15	celf3a (ENSMZEG00005026501) #16	rprd2a (ENSMZEG00005026505) #17	ciarta (ENSMZEG00005026507) #18	mrps21 (ENSMZEG00005026509) #19	crabp2b (ENSMZEG00005026511) #20	scamp3 (ENSMZEG00005026512) #21	ENSMZEG00005026514 #22	ash1l (ENSMZEG00005026516) #23	ENSMZEG00005026520 #26	ENSMZEG00005026524 #25	chrna11 (ENSMZEG00005026530) #27	snx27a (ENSMZEG00005026536) #28	ENSMZEG00005026538 #29	ENSMZEG00005026540 #29	s100a10a (ENSMZEG00005026541) #30	trim46b (ENSMZEG00005026543) #32	dpm3 (ENSMZEG00005026545) #33	efna1a (ENSMZEG00005026547) #34	ENSMZEG00005026548 #35	cks1b (ENSMZEG00005026550) #36	ENSMZEG00005026551 #37	ENSMZEG00005026555
Eastern happy	MODERN SPECIES	13	HERPUD2 (ENSACLG00000009278) #7	ADGRB1 (ENSACLG00000009396) #8	ENSACLG00000009509 #10	hnrnpr (ENSACLG00000009513) #11	ENSACLG00000009533	ENSACLG00000009541	ENSACLG00000009563 #13	clk2a (ENSACLG00000009581) #14	cers2a (ENSACLG00000009603) #15	celf3a (ENSACLG00000009631) #16	ENSACLG00000009641	ciarta (ENSACLG00000009644) #18	mrps21 (ENSACLG00000009659) #19	crabp2b (ENSACLG00000009662) #20	scamp3 (ENSACLG00000009677) #21	ENSACLG00000009685 #22	ash1l (ENSACLG00000009699) #23	ENSACLG00000009727 #26	ENSACLG00000009839 #25	chrna11 (ENSACLG00000009856) #27	ENSACLG00000009864	snx27a (ENSACLG00000009901) #28	ENSACLG00000009936 #29	ENSACLG00000009942 #29	s100a10a (ENSACLG00000009958) #30	trim46b (ENSACLG00000009963) #32	dpm3 (ENSACLG00000009972) #33	efna1a (ENSACLG00000009980) #34	ENSACLG00000009983	ENSACLG00000009992 #35	SHE (ENSACLG00000010028)
P. nyererei	MODERN SPECIES	397	SLC4A7 (ENSPNYG00000012457)	HERPUD2 (ENSPNYG00000012415) #7	ADGRB1 (ENSPNYG00000012249) #8	ENSPNYG00000012202 #10	hnrnpr (ENSPNYG00000012138) #11	dnajc8 (ENSPNYG00000012076) #12	ENSPNYG00000012049 #13	clk2a (ENSPNYG00000011683) #14	cers2a (ENSPNYG00000011548) #15	celf3a (ENSPNYG00000011518) #16	rprd2a (ENSPNYG00000011501) #17	ciarta (ENSPNYG00000011473) #18	mrps21 (ENSPNYG00000011464) #19	crabp2b (ENSPNYG00000011450) #20	scamp3 (ENSPNYG00000011437) #21	ENSPNYG00000011388 #22	ash1l (ENSPNYG00000011349) #23	lrrc71 (ENSPNYG00000011319) #24	ENSPNYG00000011291 #25	ENSPNYG00000011109 #26	chrna11 (ENSPNYG00000011046) #27	snx27a (ENSPNYG00000011002) #28	ENSPNYG00000010908 #29	ENSPNYG00000010893 #29	s100a10a (ENSPNYG00000010880) #30	trim46b (ENSPNYG00000010844) #32	dpm3 (ENSPNYG00000010826) #33	efna1a (ENSPNYG00000010806) #34	ENSPNYG00000010787 #35	cks1b (ENSPNYG00000010772) #36	ENSPNYG00000010753 #37
Lyretail cichlid	MODERN SPECIES	302	ENSNBRG00000017941	ENSNBRG00000017909 #8	ENSNBRG00000017899 #10	hnrnpr (ENSNBRG00000017879) #11	dnajc8 (ENSNBRG00000017850) #12	ENSNBRG00000017827 #13	clk2a (ENSNBRG00000017651) #14	cers2a (ENSNBRG00000017582) #15	celf3a (ENSNBRG00000017554) #16	ENSNBRG00000017540 ##16	ENSNBRG00000017527	ciarta (ENSNBRG00000017511) #18	mrps21 (ENSNBRG00000017499) #19	crabp2b (ENSNBRG00000017363) #20	scamp3 (ENSNBRG00000017335) #21	ENSNBRG00000017283 #22	ash1l (ENSNBRG00000017174) #23	lrrc71 (ENSNBRG00000017131) #24	ENSNBRG00000017009 #25	ENSNBRG00000016931 #26	chrna11 (ENSNBRG00000016828) #27	snx27a (ENSNBRG00000016773) #28	ENSNBRG00000016749 #29	ENSNBRG00000016739 #29	s100a10a (ENSNBRG00000016655) #30	trim46b (ENSNBRG00000016613) #32	dpm3 (ENSNBRG00000016594) #33	efna1a (ENSNBRG00000016557) #34	ENSNBRG00000016520 #35	cks1b (ENSNBRG00000016502) #36	ENSNBRG00000016435 #37
Midas cichlid	MODERN SPECIES	708			ADGRB1 (ENSACIG00000010640) #8	ENSACIG00000010696 #10	hnrnpr (ENSACIG00000010706) #11	ENSACIG00000010728	ENSACIG00000010745 #13	clk2a (ENSACIG00000010767) #14	cers2a (ENSACIG00000010881) #15	celf3a (ENSACIG00000010932) #16	ENSACIG00000010965 #17	ciarta (ENSACIG00000010998) #18	mrps21 (ENSACIG00000011012) #19	crabp2b (ENSACIG00000011022) #20	scamp3 (ENSACIG00000011043) #21	ENSACIG00000011069 #22	ash1l (ENSACIG00000011095) #23	lrrc71 (ENSACIG00000011144) #24	ENSACIG00000011177 #25	ENSACIG00000011189 #26	chrna11 (ENSACIG00000011268) #27
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT01030000234973.b	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT00880000138402	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT00880000138402	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT00940000158728.k	ENSGT00940000157045.b	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a	ENSGT00940000168219
Turquoise killifish	MODERN SPECIES	1628	dpm3 (ENSNFUG00015020781) #33	trim46b (ENSNFUG00015020774) #32	ENSNFUG00015020771 #30	S100A2 (ENSNFUG00015020767) #29	SNX27A (ENSNFUG00015020015) #28	Nfu_g_1_017837 (ENSNFUG00015019925) #27	ENSNFUG00015019877 #26	ENSNFUG00015019823 #25	cers2a (ENSNFUG00015019804) #15	celf3a (ENSNFUG00015019695) #16	RPRD2A (ENSNFUG00015019643) #17	C19H1ORF51 (ENSNFUG00015019628) #18	mrps21 (ENSNFUG00015019622) #19	CRABP2B (ENSNFUG00015019620) #20	SCAMP3 (ENSNFUG00015019613) #21	ENSNFUG00015019604 #22	ash1l (ENSNFUG00015019553) #23	lrrc71 (ENSNFUG00015019525) #24	ENSNFUG00015019511	clk2a (ENSNFUG00015017431) #14	DNAJC8 (ENSNFUG00015017303) #12	ENSNFUG00015017293	hnrnpr (ENSNFUG00015017206) #11	ATPIF1A (ENSNFUG00015017174) #10	ENSNFUG00015017169	BAI1 (ENSNFUG00015016730) #8	HERPUD2 (ENSNFUG00015016703) #7	SLC4A7 (ENSNFUG00015015776)	EOMESA (ENSNFUG00015015647)	ENSNFUG00015015151	TGFBR2 (ENSNFUG00015015040)
Mangrove rivulus	MODERN SPECIES	2	TGFBR2 (ENSKMAG00000012650)	ENSKMAG00000012586	eomesa (ENSKMAG00000012496)	SLC4A7 (ENSKMAG00000012350)	HERPUD2 (ENSKMAG00000012304) #7	ADGRB1 (ENSKMAG00000012221) #8	hnrnpr (ENSKMAG00000012139) #11	clk2a (ENSKMAG00000012074) #14	cers2a (ENSKMAG00000012043) #15	celf3a (ENSKMAG00000011999) #16	rprd2a (ENSKMAG00000011981) #17	ciarta (ENSKMAG00000011969) #18	mrps21 (ENSKMAG00000011957) #19	crabp2b (ENSKMAG00000011938) #20	scamp3 (ENSKMAG00000011904) #21	ENSKMAG00000011862 #22	ash1l (ENSKMAG00000011776) #23	lrrc71 (ENSKMAG00000011716) #24	ENSKMAG00000011647 #25	ENSKMAG00000011606 #26	chrna11 (ENSKMAG00000011541) #27	snx27a (ENSKMAG00000011486) #28	icn (ENSKMAG00000011467) #29	s100a10a (ENSKMAG00000011450) #30	trim46b (ENSKMAG00000011413) #32	dpm3 (ENSKMAG00000011399) #33	efna1a (ENSKMAG00000011385) #34	ENSKMAG00000011369 #35	cks1b (ENSKMAG00000011353) #36	ENSKMAG00000011336 #37	ENSKMAG00000011320
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT00880000138402	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
NAME_4	ANCESTRAL SPECIES	10		ENSGT01030000234973.b	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Mummichog	MODERN SPECIES	2348		ENSFHEG00000012679	ADGRB1 (ENSFHEG00000012665) #8	ENSFHEG00000012618 #10	hnrnpr (ENSFHEG00000012603) #11	dnajc8 (ENSFHEG00000012569) #12	clk2a (ENSFHEG00000012546) #14	cers2a (ENSFHEG00000012539) #15	celf3a (ENSFHEG00000012530) #16	ENSFHEG00000012503	ENSFHEG00000012493 #17	ciarta (ENSFHEG00000012441) #18	mrps21 (ENSFHEG00000012430) #19	crabp2b (ENSFHEG00000012423) #20	scamp3 (ENSFHEG00000012403) #21	ENSFHEG00000012370 #22	ash1l (ENSFHEG00000012308) #23	ENSFHEG00000012228	ENSFHEG00000012201 #25	ENSFHEG00000011989 #26	chrna11 (ENSFHEG00000011932) #27	snx27a (ENSFHEG00000011889) #28	icn2 (ENSFHEG00000011845) #29	s100a10a (ENSFHEG00000011839) #30	ENSFHEG00000011834	trim46b (ENSFHEG00000011810) #32	dpm3 (ENSFHEG00000011770) #33	efna1a (ENSFHEG00000011761) #34	ENSFHEG00000000265 #35	cks1b (ENSFHEG00000011707) #36	ENSFHEG00000011689 #37
Sheepshead minnow	MODERN SPECIES	203	THBS1 (ENSCVAG00000018367)	ADGRB1 (ENSCVAG00000018336) #8	ENSCVAG00000018316 #10	hnrnpr (ENSCVAG00000018291) #11	hnrnpr (ENSCVAG00000018246) #11	dnajc8 (ENSCVAG00000018231) #12	ENSCVAG00000018184 #13	clk2a (ENSCVAG00000018175) #14	cers2a (ENSCVAG00000018116) #15	celf3a (ENSCVAG00000018056) #16	rprd2a (ENSCVAG00000018006) #17	ciarta (ENSCVAG00000017992) #18	mrps21 (ENSCVAG00000017982) #19	crabp2b (ENSCVAG00000017975) #20	scamp3 (ENSCVAG00000017946) #21	ENSCVAG00000017930 #22	ash1l (ENSCVAG00000017872) #23	lrrc71 (ENSCVAG00000017850) #24	ENSCVAG00000017817 #25	ENSCVAG00000017788 #26	chrna11 (ENSCVAG00000017748) #27	snx27a (ENSCVAG00000017700) #28	icn (ENSCVAG00000017622) #29	s100a10a (ENSCVAG00000017616) #30	trim46b (ENSCVAG00000017607) #32	dpm3 (ENSCVAG00000017572) #33	efna1a (ENSCVAG00000017560) #34	ENSCVAG00000017556 #35	cks1b (ENSCVAG00000017551) #36	ENSCVAG00000000772 #37	ENSCVAG00000017519
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00390000017671.a.a #7	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT00880000138402	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37	ENSGT00940000154172.a
Poecilia	ANCESTRAL SPECIES	55	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT00880000138402	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00980000200353	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00440000034367 #24	ENSGT00940000155363.w	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37
NAME_6	ANCESTRAL SPECIES	128	ENSGT00940000157432.A #8	ENSGT00940000165091.c #10	ENSGT00940000153511.a #11	ENSGT00390000012569.a #12	ENSGT00940000175483 #13	ENSGT00940000154947.k #14	ENSGT00880000138402	ENSGT01030000234515.a.b.a.a.e #15	ENSGT00980000200353	ENSGT00940000154716.gc.b #16	ENSGT00950000183094.a.n #17	ENSGT00390000018360.b #18	ENSGT00940000166610 #19	ENSGT00940000157619.a.b #20	ENSGT00940000160917 #21	ENSGT00940000157203.d #22	ENSGT00940000156698.c #23	ENSGT00940000173967	ENSGT00940000155363.w	ENSGT00950000182891.b.b.a #25	ENSGT00950000182904.a.a.a.b #26	ENSGT00940000164921.b #27	ENSGT00950000183212.C.c.a #28	ENSGT00390000000920 #29	ENSGT00940000165795.d #30	ENSGT00940000158021.c #32	ENSGT00390000008892 #33	ENSGT00940000159919.b #34	ENSGT00940000166681 #35	ENSGT00950000182971.B.b #36	ENSGT00730000111747.b #37
Sailfin molly	MODERN SPECIES	669										ENSPLAG00000019426 ##16	rprd2a (ENSPLAG00000019420) #17	ciarta (ENSPLAG00000019407) #18	mrps21 (ENSPLAG00000019397) #19	crabp2b (ENSPLAG00000019392) #20	scamp3 (ENSPLAG00000019376) #21	ENSPLAG00000019370 #22	ash1l (ENSPLAG00000019341) #23	ENSPLAG00000019266 #25	ENSPLAG00000019241 #26	chrna11 (ENSPLAG00000019192) #27	SNX27 (ENSPLAG00000019158) #28	icn2 (ENSPLAG00000019125) #29	s100a10a (ENSPLAG00000019110) #30	trim46b (ENSPLAG00000019105) #32
Amazon molly	MODERN SPECIES	377	HERPUD2 (ENSPFOG00000007443) #7	ADGRB1 (ENSPFOG00000007532) #8	ENSPFOG00000007873	hnrnpr (ENSPFOG00000007881) #11	dnajc8 (ENSPFOG00000007962) #12	clk2a (ENSPFOG00000008036) #14	ENSPFOG00000008168	ENSPFOG00000008178	cers2a (ENSPFOG00000008203) #15	celf3a (ENSPFOG00000008507) #16	rprd2a (ENSPFOG00000008634) #17	ciarta (ENSPFOG00000008690) #18	mrps21 (ENSPFOG00000008722) #19	crabp2b (ENSPFOG00000008725) #20	scamp3 (ENSPFOG00000008731) #21	ENSPFOG00000008821 #22	ash1l (ENSPFOG00000008852) #23	ENSPFOG00000023082	ENSPFOG00000009008 #25	ENSPFOG00000009016 #26	chrna11 (ENSPFOG00000009080) #27	SNX27 (ENSPFOG00000009276) #28	icn2 (ENSPFOG00000009398) #29	ENSPFOG00000009404 #30	trim46b (ENSPFOG00000009422) #32	dpm3 (ENSPFOG00000009593) #33	efna1a (ENSPFOG00000009606) #34	ENSPFOG00000009661	ENSPFOG00000009675 #35	cks1b (ENSPFOG00000009707) #36	ENSPFOG00000009734 #37
Guppy	MODERN SPECIES	441	ADGRB1 (ENSPREG00000018569) #8	ENSPREG00000018645 #10	hnrnpr (ENSPREG00000018754) #11	dnajc8 (ENSPREG00000018781) #12	ENSPREG00000018798 #13	clk2a (ENSPREG00000018819) #14	ENSPREG00000018849	cers2a (ENSPREG00000018868) #15	ENSPREG00000018888	celf3a (ENSPREG00000018923) #16	rprd2a (ENSPREG00000018979) #17	ciarta (ENSPREG00000018998) #18	mrps21 (ENSPREG00000019017) #19	crabp2b (ENSPREG00000019026) #20	scamp3 (ENSPREG00000019041) #21	ENSPREG00000019064 #22	ash1l (ENSPREG00000019101) #23	lrrc71 (ENSPREG00000019135) #24	ENSPREG00000019180 #25	ENSPREG00000019339 #26	chrna11 (ENSPREG00000019402) #27	SNX27 (ENSPREG00000019441) #28	icn2 (ENSPREG00000019482) #29	s100a10b (ENSPREG00000019496)	trim46b (ENSPREG00000019553) #32	dpm3 (ENSPREG00000019597) #33	efna1a (ENSPREG00000019616) #34	ENSPREG00000019632 #35	cks1b (ENSPREG00000019645) #36	ENSPREG00000019653 #37	ENSPREG00000019668
Platyfish	MODERN SPECIES	4	HERPUD2 (ENSXMAG00000027325) #7	ADGRB1 (ENSXMAG00000014448) #8	ENSXMAG00000020284 #10	hnrnpr (ENSXMAG00000014480) #11	ENSXMAG00000020983 #13	dnajc8 (ENSXMAG00000027978) #12	clk2a (ENSXMAG00000014567) #14	ENSXMAG00000026806	cers2a (ENSXMAG00000014591) #15	celf3a (ENSXMAG00000014619) #16	rprd2a (ENSXMAG00000014636) #17	ciarta (ENSXMAG00000022811) #18	mrps21 (ENSXMAG00000029139) #19	crabp2b (ENSXMAG00000014642) #20	scamp3 (ENSXMAG00000021817) #21	ENSXMAG00000014665 #22	ash1l (ENSXMAG00000014673) #23	lrrc71 (ENSXMAG00000014679) #24	ENSXMAG00000014681 #25	ENSXMAG00000014698 #26	chrna11 (ENSXMAG00000014725) #27	snx27a (ENSXMAG00000014739) #28	icn2 (ENSXMAG00000028927) #29	s100a10a (ENSXMAG00000014763) #30	trim46b (ENSXMAG00000027467) #32	dpm3 (ENSXMAG00000020287) #33	efna1a (ENSXMAG00000014802) #34	ENSXMAG00000029329	ENSXMAG00000025812 #35	cks1b (ENSXMAG00000023898) #36	ENSXMAG00000014816