Eupercaria	ANCESTRAL SPECIES	1	ENSGT01060000248708 #8	ENSGT00940000154947.l #9	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00390000018360.a #17	ENSGT00940000156893 #18	ENSGT01030000234784	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591 #35	ENSGT01100000263852	ENSGT01030000234782 #36
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT01060000248708 #8	ENSGT00940000154947.l #9	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00390000018360.a #17	ENSGT00940000156893 #18	ENSGT01030000234784	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591 #35	ENSGT01100000263852	ENSGT01030000234782 #36
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT01060000248708 #8	ENSGT00940000154947.l #9	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00390000018360.a #17	ENSGT00940000156893 #18	ENSGT01030000234784	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.c.a #35	ENSGT01100000263852	ENSGT01100000263591.d ##35
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000161506 #7	ENSGT01060000248708 #8	ENSGT00940000154947.l #9	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00390000018360.a #17	ENSGT00940000156893 #18	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000174526 #25	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.c.a #35	ENSGT01030000234782 #36	ENSGT00940000162189 #37
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000161506 #7	ENSGT01060000248708 #8	ENSGT00940000154947.l #9	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00940000164936.a	ENSGT00940000156893 #18	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000174526 #25	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01030000234782 #36	ENSGT00940000162189 #37	ENSGT00390000003552
Lumpfish	MODERN SPECIES	7	cyp11c1 (ENSCLMG00005010177) #7	clk2b (ENSCLMG00005010167) #9	setdb1b (ENSCLMG00005010098) #10	arnt (ENSCLMG00005008812) #11	CERS2 (ENSCLMG00005008805) #12	CELF3 (ENSCLMG00005008804) #13	ENSCLMG00005008803	ENSCLMG00005002688 #14	ENSCLMG00005002666 #15	prpf3 (ENSCLMG00005002646) #16	ENSCLMG00005002641	ca14 (ENSCLMG00005002637) #18	crabp2a (ENSCLMG00005002635) #19	ITGA10 (ENSCLMG00005002630) #20	polr3c (ENSCLMG00005002406) #21	rnf115a (ENSCLMG00005002402) #22	GBA1 (ENSCLMG00005002138) #23	dap3 (ENSCLMG00005002077) #24	ENSCLMG00005002067 #25	ENSCLMG00005002063 #26	fdps (ENSCLMG00005002034) #27	ENSCLMG00005002032 #28	rab13 (ENSCLMG00005002029) #29	ENSCLMG00005002025 #30	KCNN3 (ENSCLMG00005002023) #31	adar (ENSCLMG00005001707) #32	ENSCLMG00005001377 #33	SNX27 (ENSCLMG00005012787) #34	ENSCLMG00005012786	ENSCLMG00005012778	ENSCLMG00005012774
Stickleback	MODERN SPECIES	19	ENSGACG00000011666 #8	clk2b (ENSGACG00000011669) #9	ENSGACG00000011670	setdb1b (ENSGACG00000011675) #10	arnt (ENSGACG00000011686) #11	CERS2 (ENSGACG00000011695) #12	CELF3 (ENSGACG00000011707) #13	ENSGACG00000011722	ENSGACG00000011734 #14	ENSGACG00000011789 #15	prpf3 (ENSGACG00000011792) #16	ca14 (ENSGACG00000011803) #18	crabp2a (ENSGACG00000011813) #19	ITGA10 (ENSGACG00000011820) #20	polr3c (ENSGACG00000011829) #21	rnf115a (ENSGACG00000011841) #22	GBA1 (ENSGACG00000011848) #23	dap3 (ENSGACG00000011859) #24	ENSGACG00000011873 #26	fdps (ENSGACG00000011874) #27	ENSGACG00000011917 #28	rab13 (ENSGACG00000011925) #29	ENSGACG00000011934 ##30	KCNN3 (ENSGACG00000011942) #31	adar (ENSGACG00000011951) #32	ENSGACG00000011957 #33	SNX27 (ENSGACG00000011965) #34	ENSGACG00000011970	TMEM107 (ENSGACG00000011983)	TRIM46 (ENSGACG00000011991)	slc50a1 (ENSGACG00000012002)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000008859.b.c	ENSGT00940000161506 #7	ENSGT00940000154947.l #9	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00390000018360.a #17	ENSGT00940000156893 #18	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000174526 #25	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.c.a #35	ENSGT01030000234782 #36	ENSGT00940000162189 #37
Channel bull blenny	MODERN SPECIES	7	clk2b (ENSCGOG00000002513) #9	setdb1b (ENSCGOG00000002878) #10	arnt (ENSCGOG00000002983) #11	CERS2 (ENSCGOG00000003927) #12	CELF3 (ENSCGOG00000003981) #13	ENSCGOG00000004667	ENSCGOG00000004683 #14	ENSCGOG00000005086 #15	ENSCGOG00000005088 #15	prpf3 (ENSCGOG00000005098) #16	CIART (ENSCGOG00000005717) #17	ca14 (ENSCGOG00000005720) #18	crabp2a (ENSCGOG00000005736) #19	ITGA10 (ENSCGOG00000005744) #20	polr3c (ENSCGOG00000005762) #21	rnf115a (ENSCGOG00000005990) #22	GBA1 (ENSCGOG00000005999) #23	dap3 (ENSCGOG00000006143) #24	ENSCGOG00000006549 #25	ENSCGOG00000006551 #26	fdps (ENSCGOG00000006560) #27	ENSCGOG00000006947 #28	ENSCGOG00000006992	ENSCGOG00000007084 #30	ENSCGOG00000007138 #31	adar (ENSCGOG00000007148) #32	ENSCGOG00000007597 #33	SNX27 (ENSCGOG00000007628) #34	ENSCGOG00000008146 #35	ENSCGOG00000008147	ENSCGOG00000008148
Pike perch	MODERN SPECIES	15	clk2b (ENSSLUG00000011632) #9	setdb1b (ENSSLUG00000010791) #10	arnt (ENSSLUG00000008830) #11	ENSSLUG00000008743	CERS2 (ENSSLUG00000008735) #12	CELF3 (ENSSLUG00000008730) #13	ENSSLUG00000008552	ENSSLUG00000006094 #14	ENSSLUG00000005975	prpf3 (ENSSLUG00000005921) #16	ENSSLUG00000005895 #17	ca14 (ENSSLUG00000005873) #18	crabp2a (ENSSLUG00000005867) #19	ITGA10 (ENSSLUG00000005771) #20	polr3c (ENSSLUG00000005739) #21	rnf115a (ENSSLUG00000005724) #22	GBA1 (ENSSLUG00000005653) #23	dap3 (ENSSLUG00000005359) #24	ENSSLUG00000005291 #25	ENSSLUG00000005273 #26	fdps (ENSSLUG00000005158) #27	ENSSLUG00000012718 #28	rab13 (ENSSLUG00000012708) #29	ENSSLUG00000012690 #30	KCNN3 (ENSSLUG00000012668) #31	adar (ENSSLUG00000012261) #32	ENSSLUG00000012233 #33	SNX27 (ENSSLUG00000012186) #34	ENSSLUG00000012163 #35	ENSSLUG00000012160 #35	ENSSLUG00000012150 #36
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000154947.l #9	ENSGT00940000174801	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00390000018360.a #17	ENSGT00940000156893 #18	ENSGT01030000234784	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000155363.w	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.d ##35	ENSGT01030000234782 #36	ENSGT00940000162189 #37
Gilthead seabream	MODERN SPECIES	8	pklr (ENSSAUG00010018486)	cyp11c1 (ENSSAUG00010017931) #7	clk2b (ENSSAUG00010017904) #9	ENSSAUG00010017900	setdb1b (ENSSAUG00010017197) #10	ENSSAUG00010017149 #11	ENSSAUG00010016669 #14	RPRD2 (ENSSAUG00010016655) #15	prpf3 (ENSSAUG00010016468) #16	ENSSAUG00010016459 #17	ca14 (ENSSAUG00010016450) #18	ENSSAUG00010016443	crabp2a (ENSSAUG00010016437) #19	ITGA10 (ENSSAUG00010016335) #20	polr3c (ENSSAUG00010016062) #21	rnf115a (ENSSAUG00010016057) #22	GBA1 (ENSSAUG00010015806) #23	ENSSAUG00010015774	ENSSAUG00010015770 #26	fdps (ENSSAUG00010015664) #27	ENSSAUG00010015657 #28	rab13 (ENSSAUG00010015654) #29	ENSSAUG00010015651 ##30	ENSSAUG00010015641 #31	adar (ENSSAUG00010015349) #32	ENSSAUG00010015341 #33	SNX27 (ENSSAUG00010014932) #34	ENSSAUG00010014923 ##35	ENSSAUG00010014921	ENSSAUG00010014920 #35	ENSSAUG00010014918 ##35
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000154947.l #9	ENSGT00940000174801	ENSGT00940000157471.a #10	ENSGT00940000157585 #11	ENSGT01030000234515.a.b.a.a.f #12	ENSGT00940000154716.gc.a #13	ENSGT00940000159348 #14	ENSGT00950000183094.a.m #15	ENSGT00390000011497 #16	ENSGT00390000018360.a #17	ENSGT00940000156893 #18	ENSGT01030000234784	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000155363.w	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.d ##35	ENSGT01030000234782 #36	ENSGT00940000162189 #37
European seabass	MODERN SPECIES	6	ENSDLAG00005006550 #7	clk2b (ENSDLAG00005006824) #9	ENSDLAG00005033042	ENSDLAG00005006849 #10	ENSDLAG00005007305 #11	ENSDLAG00005007549 #13	ENSDLAG00005007638	ENSDLAG00005007823 #14	RPRD2 (ENSDLAG00005033013) #15	ENSDLAG00005009487 #16	CIART (ENSDLAG00005009769) #17	ENSDLAG00005009781 #18	crabp2a (ENSDLAG00005009798) #19	ITGA10 (ENSDLAG00005009841) #20	polr3c (ENSDLAG00005011069) #21	rnf115a (ENSDLAG00005011219) #22	ENSDLAG00005011233 #23	dap3 (ENSDLAG00005011245) #24	ENSDLAG00005011394	ENSDLAG00005011406 #26	fdps (ENSDLAG00005011432) #27	ENSDLAG00005011531 #28	ENSDLAG00005028206	ENSDLAG00005014946 ##30	ENSDLAG00005011602 #31	adar (ENSDLAG00005011759) #32	ENSDLAG00005011779 #33	ENSDLAG00005011804 #34	ENSDLAG00005031554 ##35	ENSDLAG00005030187 ##35	ENSDLAG00005034403 ##35
Large yellow croaker	MODERN SPECIES	484	cyp11c1 (ENSLCRG00005005457) #7	setdb1b (ENSLCRG00005005494) #10	arnt (ENSLCRG00005006183) #11	CERS2 (ENSLCRG00005006848) #12	CELF3 (ENSLCRG00005006865) #13	ENSLCRG00005006884	ENSLCRG00005006911 #14	ENSLCRG00005008092 #15	prpf3 (ENSLCRG00005008101) #16	ENSLCRG00005008109	ca14 (ENSLCRG00005008112) #18	ENSLCRG00005008115	crabp2a (ENSLCRG00005008118) #19	ITGA10 (ENSLCRG00005008129) #20	polr3c (ENSLCRG00005008200) #21	rnf115a (ENSLCRG00005008231) #22	GBA1 (ENSLCRG00005008261) #23	dap3 (ENSLCRG00005008373) #24	ENSLCRG00005008803 #26	fdps (ENSLCRG00005008808) #27	ENSLCRG00005008811 #28	ENSLCRG00005008813	ENSLCRG00005008818 #30	ENSLCRG00005008821 #31	adar (ENSLCRG00005008829) #32	ENSLCRG00005009006 #33	SNX27 (ENSLCRG00005009012) #34	ENSLCRG00005009363 ##35	ENSLCRG00005009364 #36	s100a10b (ENSLCRG00005009365) #37	krtcap2 (ENSLCRG00005009366)
Ballan wrasse	MODERN SPECIES	97	ENSLBEG00000025807	setdb1b (ENSLBEG00000025862) #10	arnt (ENSLBEG00000026037) #11	CERS2 (ENSLBEG00000026082) #12	CELF3 (ENSLBEG00000026140) #13	ENSLBEG00000026210	ENSLBEG00000026238 #14	RPRD2 (ENSLBEG00000026261) #15	prpf3 (ENSLBEG00000026310) #16	CIART (ENSLBEG00000026371) #17	ca14 (ENSLBEG00000026406) #18	ENSLBEG00000026474	crabp2a (ENSLBEG00000026486) #19	ITGA10 (ENSLBEG00000026514) #20	polr3c (ENSLBEG00000026567) #21	rnf115a (ENSLBEG00000026606) #22	GBA1 (ENSLBEG00000026624) #23	dap3 (ENSLBEG00000026641) #24	ENSLBEG00000026666 #26	fdps (ENSLBEG00000026711) #27	ENSLBEG00000026739 #28	rab13 (ENSLBEG00000026779) #29	ENSLBEG00000000272 #30	KCNN3 (ENSLBEG00000000309) #31	adar (ENSLBEG00000000352) #32	ENSLBEG00000000410 #33	SNX27 (ENSLBEG00000000470) #34	ENSLBEG00000000532 #35	GSDME (ENSLBEG00000000548)	pals2a (ENSLBEG00000000577)	NPY (ENSLBEG00000000596)
Tetraodontidae	ANCESTRAL SPECIES	14														ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.b.b.b.a ##30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT00990000210733	ENSGT01030000234782 #36	ENSGT00940000162189 #37
Fugu	MODERN SPECIES	19	aicda (ENSTRUG00000007079)	nat14 (ENSTRUG00000007241)	ENSTRUG00000007250	il-11a (ENSTRUG00000027860)	rasip1 (ENSTRUG00000007545)	cox6b2 (ENSTRUG00000025595)	ENSTRUG00000007710	ENSTRUG00000008107	trpv6 (ENSTRUG00000009207)	ENSTRUG00000024780	zgc:92606 (ENSTRUG00000019706)	ENSTRUG00000020896	m6pr (ENSTRUG00000009804)	ITGA10 (ENSTRUG00000009933) #20	polr3c (ENSTRUG00000010726) #21	rnf115a (ENSTRUG00000025017) #22	GBA1 (ENSTRUG00000010884) #23	dap3 (ENSTRUG00000011013) #24	ENSTRUG00000030558 #26	fdps (ENSTRUG00000022938) #27	ENSTRUG00000011298 #28	rab13 (ENSTRUG00000024177) #29	RPS27 (ENSTRUG00000031079) ##30	KCNN3 (ENSTRUG00000009204) #31	adar (ENSTRUG00000008870) #32	ENSTRUG00000028031 #33	SNX27 (ENSTRUG00000007624) #34	ENSTRUG00000031029	ENSTRUG00000028951	ENSTRUG00000024845 #36	ENSTRUG00000023896 #37
Tetraodon	MODERN SPECIES	23	isoc2 (ENSTNIG00000008112)	ENSTNIG00000008113	epn1a (ENSTNIG00000008114)	sbk3 (ENSTNIG00000008115)	mfap5 (ENSTNIG00000008116)	ENSTNIG00000008117	aicda (ENSTNIG00000008118)	nat14 (ENSTNIG00000008119)	ZNF628 (ENSTNIG00000001164)	ENSTNIG00000000618	rasip1 (ENSTNIG00000008120)	cox6b2 (ENSTNIG00000008121)	ENSTNIG00000013823	ITGA10 (ENSTNIG00000019500) #20	polr3c (ENSTNIG00000019501) #21	rnf115a (ENSTNIG00000019502) #22	ENSTNIG00000008297	trpv6 (ENSTNIG00000008298)	si:dkey-26c10.5 (ENSTNIG00000008299)	zgc:92606 (ENSTNIG00000008300)	ENSTNIG00000008301	ENSTNIG00000018313	GBA1 (ENSTNIG00000018314) #23	dap3 (ENSTNIG00000018315) #24	ENSTNIG00000018316	ENSTNIG00000018317 #26	fdps (ENSTNIG00000018318) #27	ENSTNIG00000018319	ENSTNIG00000002315 #31	adar (ENSTNIG00000018320) #32	ENSTNIG00000018321 #33