Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT01060000248708 #7	ENSGT00940000154947.l #8	ENSGT00940000157471.a #9	ENSGT00940000157585 #10	ENSGT01030000234515.a.b.a.a.f #11	ENSGT00940000154716.gc.a #12	ENSGT00940000159348 #13	ENSGT00950000183094.a.m #14	ENSGT00390000011497 #15	ENSGT00390000018360.a #16	ENSGT00940000156893 #17	ENSGT01030000234784 #18	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d #25	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591 #35	ENSGT01100000263852 #36	ENSGT01030000234782 #37
Ballan wrasse	MODERN SPECIES	97	ENSLBEG00000025807	setdb1b (ENSLBEG00000025862) #9	arnt (ENSLBEG00000026037) #10	CERS2 (ENSLBEG00000026082) #11	CELF3 (ENSLBEG00000026140) #12	ENSLBEG00000026210	ENSLBEG00000026238 #13	RPRD2 (ENSLBEG00000026261) #14	prpf3 (ENSLBEG00000026310) #15	CIART (ENSLBEG00000026371) #16	ca14 (ENSLBEG00000026406) #17	ENSLBEG00000026474 #18	crabp2a (ENSLBEG00000026486) #19	ITGA10 (ENSLBEG00000026514) #20	polr3c (ENSLBEG00000026567) #21	rnf115a (ENSLBEG00000026606) #22	GBA1 (ENSLBEG00000026624) #23	dap3 (ENSLBEG00000026641) #24	ENSLBEG00000026666 #26	fdps (ENSLBEG00000026711) #27	ENSLBEG00000026739 #28	rab13 (ENSLBEG00000026779) #29	ENSLBEG00000000272 #30	KCNN3 (ENSLBEG00000000309) #31	adar (ENSLBEG00000000352) #32	ENSLBEG00000000410 #33	SNX27 (ENSLBEG00000000470) #34	ENSLBEG00000000532 #35	GSDME (ENSLBEG00000000548)	pals2a (ENSLBEG00000000577)	NPY (ENSLBEG00000000596)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT01060000248708 #7	ENSGT00940000154947.l #8	ENSGT00940000157471.a #9	ENSGT00940000157585 #10	ENSGT01030000234515.a.b.a.a.f #11	ENSGT00940000154716.gc.a #12	ENSGT00940000159348 #13	ENSGT00950000183094.a.m #14	ENSGT00390000011497 #15	ENSGT00390000018360.a #16	ENSGT00940000156893 #17	ENSGT01030000234784 #18	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d #25	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.c.a #35	ENSGT01100000263852 #36	ENSGT01100000263591.d #35
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000161506	ENSGT01060000248708 #7	ENSGT00940000154947.l #8	ENSGT00940000157471.a #9	ENSGT00940000157585 #10	ENSGT01030000234515.a.b.a.a.f #11	ENSGT00940000154716.gc.a #12	ENSGT00940000159348 #13	ENSGT00950000183094.a.m #14	ENSGT00390000011497 #15	ENSGT00390000018360.a #16	ENSGT00940000156893 #17	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000174526	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.c.a #35	ENSGT01030000234782 #37	ENSGT00940000162189
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000161506	ENSGT01060000248708 #7	ENSGT00940000154947.l #8	ENSGT00940000157471.a #9	ENSGT00940000157585 #10	ENSGT01030000234515.a.b.a.a.f #11	ENSGT00940000154716.gc.a #12	ENSGT00940000159348 #13	ENSGT00950000183094.a.m #14	ENSGT00390000011497 #15	ENSGT00940000164936.a	ENSGT00940000156893 #17	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000174526	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01030000234782 #37	ENSGT00940000162189	ENSGT00390000003552
Lumpfish	MODERN SPECIES	7	cyp11c1 (ENSCLMG00005010177)	clk2b (ENSCLMG00005010167) #8	setdb1b (ENSCLMG00005010098) #9	arnt (ENSCLMG00005008812) #10	CERS2 (ENSCLMG00005008805) #11	CELF3 (ENSCLMG00005008804) #12	ENSCLMG00005008803	ENSCLMG00005002688 #13	ENSCLMG00005002666 #14	prpf3 (ENSCLMG00005002646) #15	ENSCLMG00005002641	ca14 (ENSCLMG00005002637) #17	crabp2a (ENSCLMG00005002635) #19	ITGA10 (ENSCLMG00005002630) #20	polr3c (ENSCLMG00005002406) #21	rnf115a (ENSCLMG00005002402) #22	GBA1 (ENSCLMG00005002138) #23	dap3 (ENSCLMG00005002077) #24	ENSCLMG00005002067	ENSCLMG00005002063 #26	fdps (ENSCLMG00005002034) #27	ENSCLMG00005002032 #28	rab13 (ENSCLMG00005002029) #29	ENSCLMG00005002025 #30	KCNN3 (ENSCLMG00005002023) #31	adar (ENSCLMG00005001707) #32	ENSCLMG00005001377 #33	SNX27 (ENSCLMG00005012787) #34	ENSCLMG00005012786	ENSCLMG00005012778	ENSCLMG00005012774
Stickleback	MODERN SPECIES	19	ENSGACG00000011666 #7	clk2b (ENSGACG00000011669) #8	ENSGACG00000011670	setdb1b (ENSGACG00000011675) #9	arnt (ENSGACG00000011686) #10	CERS2 (ENSGACG00000011695) #11	CELF3 (ENSGACG00000011707) #12	ENSGACG00000011722	ENSGACG00000011734 #13	ENSGACG00000011789 #14	prpf3 (ENSGACG00000011792) #15	ca14 (ENSGACG00000011803) #17	crabp2a (ENSGACG00000011813) #19	ITGA10 (ENSGACG00000011820) #20	polr3c (ENSGACG00000011829) #21	rnf115a (ENSGACG00000011841) #22	GBA1 (ENSGACG00000011848) #23	dap3 (ENSGACG00000011859) #24	ENSGACG00000011873 #26	fdps (ENSGACG00000011874) #27	ENSGACG00000011917 #28	rab13 (ENSGACG00000011925) #29	ENSGACG00000011934 ##30	KCNN3 (ENSGACG00000011942) #31	adar (ENSGACG00000011951) #32	ENSGACG00000011957 #33	SNX27 (ENSGACG00000011965) #34	ENSGACG00000011970	TMEM107 (ENSGACG00000011983)	TRIM46 (ENSGACG00000011991)	slc50a1 (ENSGACG00000012002)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000008859.b.c	ENSGT00940000161506	ENSGT00940000154947.l #8	ENSGT00940000157471.a #9	ENSGT00940000157585 #10	ENSGT01030000234515.a.b.a.a.f #11	ENSGT00940000154716.gc.a #12	ENSGT00940000159348 #13	ENSGT00950000183094.a.m #14	ENSGT00390000011497 #15	ENSGT00390000018360.a #16	ENSGT00940000156893 #17	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000174526	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000159989 #29	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.c.a #35	ENSGT01030000234782 #37	ENSGT00940000162189
Channel bull blenny	MODERN SPECIES	7	clk2b (ENSCGOG00000002513) #8	setdb1b (ENSCGOG00000002878) #9	arnt (ENSCGOG00000002983) #10	CERS2 (ENSCGOG00000003927) #11	CELF3 (ENSCGOG00000003981) #12	ENSCGOG00000004667	ENSCGOG00000004683 #13	ENSCGOG00000005086 #14	ENSCGOG00000005088 #14	prpf3 (ENSCGOG00000005098) #15	CIART (ENSCGOG00000005717) #16	ca14 (ENSCGOG00000005720) #17	crabp2a (ENSCGOG00000005736) #19	ITGA10 (ENSCGOG00000005744) #20	polr3c (ENSCGOG00000005762) #21	rnf115a (ENSCGOG00000005990) #22	GBA1 (ENSCGOG00000005999) #23	dap3 (ENSCGOG00000006143) #24	ENSCGOG00000006549	ENSCGOG00000006551 #26	fdps (ENSCGOG00000006560) #27	ENSCGOG00000006947 #28	ENSCGOG00000006992	ENSCGOG00000007084 #30	ENSCGOG00000007138 #31	adar (ENSCGOG00000007148) #32	ENSCGOG00000007597 #33	SNX27 (ENSCGOG00000007628) #34	ENSCGOG00000008146 #35	ENSCGOG00000008147	ENSCGOG00000008148
Pike perch	MODERN SPECIES	15	clk2b (ENSSLUG00000011632) #8	setdb1b (ENSSLUG00000010791) #9	arnt (ENSSLUG00000008830) #10	ENSSLUG00000008743	CERS2 (ENSSLUG00000008735) #11	CELF3 (ENSSLUG00000008730) #12	ENSSLUG00000008552	ENSSLUG00000006094 #13	ENSSLUG00000005975	prpf3 (ENSSLUG00000005921) #15	ENSSLUG00000005895 #16	ca14 (ENSSLUG00000005873) #17	crabp2a (ENSSLUG00000005867) #19	ITGA10 (ENSSLUG00000005771) #20	polr3c (ENSSLUG00000005739) #21	rnf115a (ENSSLUG00000005724) #22	GBA1 (ENSSLUG00000005653) #23	dap3 (ENSSLUG00000005359) #24	ENSSLUG00000005291	ENSSLUG00000005273 #26	fdps (ENSSLUG00000005158) #27	ENSSLUG00000012718 #28	rab13 (ENSSLUG00000012708) #29	ENSSLUG00000012690 #30	KCNN3 (ENSSLUG00000012668) #31	adar (ENSSLUG00000012261) #32	ENSSLUG00000012233 #33	SNX27 (ENSSLUG00000012186) #34	ENSSLUG00000012163 #35	ENSSLUG00000012160 #35	ENSSLUG00000012150 #37
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000154947.l #8	ENSGT00940000174801	ENSGT00940000157471.a #9	ENSGT00940000157585 #10	ENSGT01030000234515.a.b.a.a.f #11	ENSGT00940000154716.gc.a #12	ENSGT00940000159348 #13	ENSGT00950000183094.a.m #14	ENSGT00390000011497 #15	ENSGT00390000018360.a #16	ENSGT00940000156893 #17	ENSGT01030000234784 #18	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d #25	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000155363.w	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.d #35	ENSGT01030000234782 #37	ENSGT00940000162189
Gilthead seabream	MODERN SPECIES	8	pklr (ENSSAUG00010018486)	cyp11c1 (ENSSAUG00010017931)	clk2b (ENSSAUG00010017904) #8	ENSSAUG00010017900	setdb1b (ENSSAUG00010017197) #9	ENSSAUG00010017149 #10	ENSSAUG00010016669 #13	RPRD2 (ENSSAUG00010016655) #14	prpf3 (ENSSAUG00010016468) #15	ENSSAUG00010016459 #16	ca14 (ENSSAUG00010016450) #17	ENSSAUG00010016443 #18	crabp2a (ENSSAUG00010016437) #19	ITGA10 (ENSSAUG00010016335) #20	polr3c (ENSSAUG00010016062) #21	rnf115a (ENSSAUG00010016057) #22	GBA1 (ENSSAUG00010015806) #23	ENSSAUG00010015774 #25	ENSSAUG00010015770 #26	fdps (ENSSAUG00010015664) #27	ENSSAUG00010015657 #28	rab13 (ENSSAUG00010015654) #29	ENSSAUG00010015651 ##30	ENSSAUG00010015641 #31	adar (ENSSAUG00010015349) #32	ENSSAUG00010015341 #33	SNX27 (ENSSAUG00010014932) #34	ENSSAUG00010014923 #35	ENSSAUG00010014921	ENSSAUG00010014920 #35	ENSSAUG00010014918 #35
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000154947.l #8	ENSGT00940000174801	ENSGT00940000157471.a #9	ENSGT00940000157585 #10	ENSGT01030000234515.a.b.a.a.f #11	ENSGT00940000154716.gc.a #12	ENSGT00940000159348 #13	ENSGT00950000183094.a.m #14	ENSGT00390000011497 #15	ENSGT00390000018360.a #16	ENSGT00940000156893 #17	ENSGT01030000234784 #18	ENSGT00940000157619.a.a #19	ENSGT00940000158423 #20	ENSGT00390000002799 #21	ENSGT00940000157203.c #22	ENSGT00390000009464 #23	ENSGT00390000015248 #24	ENSGT00940000156698.d #25	ENSGT00900000141033.b.b #26	ENSGT00900000141074 #27	ENSGT00530000063335.B.a.a.b #28	ENSGT00940000155363.w	ENSGT00950000182891.b.a.b #30	ENSGT00950000182904.a.a.a.a #31	ENSGT00940000157243 #32	ENSGT00940000164921.a #33	ENSGT00950000183212.C.c.b #34	ENSGT01100000263591.d #35	ENSGT01030000234782 #37	ENSGT00940000162189
European seabass	MODERN SPECIES	6	ENSDLAG00005006550	clk2b (ENSDLAG00005006824) #8	ENSDLAG00005033042	ENSDLAG00005006849 #9	ENSDLAG00005007305 #10	ENSDLAG00005007549 #12	ENSDLAG00005007638	ENSDLAG00005007823 #13	RPRD2 (ENSDLAG00005033013) #14	ENSDLAG00005009487 #15	CIART (ENSDLAG00005009769) #16	ENSDLAG00005009781 #17	crabp2a (ENSDLAG00005009798) #19	ITGA10 (ENSDLAG00005009841) #20	polr3c (ENSDLAG00005011069) #21	rnf115a (ENSDLAG00005011219) #22	ENSDLAG00005011233 #23	dap3 (ENSDLAG00005011245) #24	ENSDLAG00005011394 #25	ENSDLAG00005011406 #26	fdps (ENSDLAG00005011432) #27	ENSDLAG00005011531 #28	ENSDLAG00005028206	ENSDLAG00005014946 ##30	ENSDLAG00005011602 #31	adar (ENSDLAG00005011759) #32	ENSDLAG00005011779 #33	ENSDLAG00005011804 #34	ENSDLAG00005031554 #35	ENSDLAG00005030187 #35	ENSDLAG00005034403 #35
Large yellow croaker	MODERN SPECIES	484	cyp11c1 (ENSLCRG00005005457)	setdb1b (ENSLCRG00005005494) #9	arnt (ENSLCRG00005006183) #10	CERS2 (ENSLCRG00005006848) #11	CELF3 (ENSLCRG00005006865) #12	ENSLCRG00005006884	ENSLCRG00005006911 #13	ENSLCRG00005008092 #14	prpf3 (ENSLCRG00005008101) #15	ENSLCRG00005008109	ca14 (ENSLCRG00005008112) #17	ENSLCRG00005008115 #18	crabp2a (ENSLCRG00005008118) #19	ITGA10 (ENSLCRG00005008129) #20	polr3c (ENSLCRG00005008200) #21	rnf115a (ENSLCRG00005008231) #22	GBA1 (ENSLCRG00005008261) #23	dap3 (ENSLCRG00005008373) #24	ENSLCRG00005008803 #26	fdps (ENSLCRG00005008808) #27	ENSLCRG00005008811 #28	ENSLCRG00005008813	ENSLCRG00005008818 #30	ENSLCRG00005008821 #31	adar (ENSLCRG00005008829) #32	ENSLCRG00005009006 #33	SNX27 (ENSLCRG00005009012) #34	ENSLCRG00005009363 #35	ENSLCRG00005009364 #37	s100a10b (ENSLCRG00005009365)	krtcap2 (ENSLCRG00005009366)