Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	106	ENSGT00940000157781.e #7	ENSGT01030000234597.a.b.b.e.b.t.a.a #8	ENSGT00940000164547.b.b.c #9	ENSGT00940000157621.j #10	ENSGT00390000010337.B.a.b.v #11	ENSGT00950000182863.A.b.b #12	ENSGT00390000003305.c #13	ENSGT00390000001515.j.a #14	ENSGT00940000153769.F.n.b #15	ENSGT00520000055667.f #16	ENSGT00390000017400.b #17	ENSGT01030000234784 #18	ENSGT00940000157619.a.a.d #19	ENSGT00940000158423.j #20	ENSGT00390000002799.g #21	ENSGT00940000157203.c.b #22
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00940000157781.e #7	ENSGT01030000234597.a.b.b.e.b.t.a.a #8	ENSGT00940000164547.b.b.c #9	ENSGT00940000157621.j #10	ENSGT00390000010337.B.a.b.v #11	ENSGT00950000182863.A.b.b #12	ENSGT00390000003305.c #13	ENSGT00390000001515.j.a #14	ENSGT00940000153769.F.n.b #15	ENSGT00520000055667.f #16	ENSGT00390000017400.b #17	ENSGT01030000234784 #18	ENSGT00940000157619.a.a.d #19	ENSGT00940000158423.j #20	ENSGT00390000002799.g #21	ENSGT00940000157203.c.b #22	ENSGT00390000009464 #23	ENSGT00940000156698.d.b #24	ENSGT00940000164374.A.c.a.b.a #25	ENSGT00900000141033.b.b.o.b #26	ENSGT00900000141074.s #27	ENSGT00390000008061.j.b.c.b.a.b.a #28	ENSGT00610000087473 #29	ENSGT00940000159441.k.e #30	ENSGT01050000244814.b.b.a #31	ENSGT00390000016654.v #32	ENSGT00940000162969.j #33	ENSGT00550000075124.h #34	ENSGT01030000235056.a.a #35	ENSGT00390000009864.a #36	ENSGT00390000010577.a #37
Common carp reference	MODERN SPECIES	47	ENSCCRG00000054598	upp1 (ENSCCRG00000043865) #7	stmn2a (ENSCCRG00000043852) #8	ENSCCRG00000069741 #9	ENSCCRG00000043829 #10	has2 (ENSCCRG00000017616) #11	sntb1 (ENSCCRG00000033150) #12	MTBP (ENSCCRG00000033144) #13	mrpl13 (ENSCCRG00000042788) #14	COL14A1 (ENSCCRG00000001581) #15	deptor (ENSCCRG00000075215) #16	dscc1 (ENSCCRG00000001270) #17	crabp2a (ENSCCRG00000001260) #19	ITGA10 (ENSCCRG00000004992) #20	polr3c (ENSCCRG00000001195) #21	rnf115a (ENSCCRG00000043890) #22	ENSCCRG00000043850 #23	ENSCCRG00000070677 #24	trim109 (ENSCCRG00000061675) #25	ENSCCRG00000001167 #26	fdps (ENSCCRG00000001171) #27	ENSCCRG00000001176 #28	ENSCCRG00000061967 #29	rcvrn2 (ENSCCRG00000001178) #30	ENSCCRG00000058707 #31	atg12 (ENSCCRG00000073200) #32	cdc42ep5 (ENSCCRG00000063157) #33	grwd1 (ENSCCRG00000034381) #34	flcn (ENSCCRG00000034164) #36	ENSCCRG00000055213	josd2 (ENSCCRG00000029519)
Golden-line barbel	MODERN SPECIES	221	upp1 (ENSSGRG00000014858) #7	stmn2a (ENSSGRG00000014855) #8	ENSSGRG00000014854 #9	ANKIB1 (ENSSGRG00000014802) #10	has2 (ENSSGRG00000014798) #11	sntb1 (ENSSGRG00000014791) #12	MTBP (ENSSGRG00000014788) #13	mrpl13 (ENSSGRG00000014782) #14	COL14A1 (ENSSGRG00000014336) #15	deptor (ENSSGRG00000014315) #16	dscc1 (ENSSGRG00000014277) #17	ENSSGRG00000014275 #18	crabp2a (ENSSGRG00000014269) #19	ITGA10 (ENSSGRG00000014164) #20	polr3c (ENSSGRG00000014139) #21	rnf115a (ENSSGRG00000014126) #22	GBA1 (ENSSGRG00000014092) #23	ENSSGRG00000014090 #24	trim109 (ENSSGRG00000014088) #25	ENSSGRG00000014086 #26	fdps (ENSSGRG00000014062) #27
Goldfish	MODERN SPECIES	7	ENSCARG00000041287	upp1 (ENSCARG00000041311) #7	stmn2a (ENSCARG00000041360) #8	ENSCARG00000041405 #9	ANKIB1 (ENSCARG00000041469) #10	has2 (ENSCARG00000041625) #11	sntb1 (ENSCARG00000041658) #12	MTBP (ENSCARG00000041712) #13	mrpl13 (ENSCARG00000041851) ##14	COL14A1 (ENSCARG00000042027) #15	deptor (ENSCARG00000044259) #16	dscc1 (ENSCARG00000044273) #17	crabp2a (ENSCARG00000044368) #19	ITGA10 (ENSCARG00000044418) #20	polr3c (ENSCARG00000044682) #21	rnf115a (ENSCARG00000045237) #22	GBA1 (ENSCARG00000047165) #23	dap3 (ENSCARG00000045394)	ENSCARG00000047529 #24	trim109 (ENSCARG00000047547) #25	ENSCARG00000047607 #26	fdps (ENSCARG00000047647) #27	ENSCARG00000047743 #28	rcvrn2 (ENSCARG00000047755) #30	ENSCARG00000047769 #31	atg12 (ENSCARG00000047797) #32	cdc42ep5 (ENSCARG00000047822) #33	grwd1 (ENSCARG00000047827) #34	zgc:174888 (ENSCARG00000047872) #35	flcn (ENSCARG00000047931) #36	leng9 (ENSCARG00000048465) #37
Cyprininae	ANCESTRAL SPECIES	7		ENSGT00940000157781.f ##7	ENSGT01030000234597.a.b.b.e.b.t.a.b ##8	ENSGT00940000164547.b.b.d ##9	ENSGT00940000157621.i ##10	ENSGT00390000010337.B.a.b.u ##11	ENSGT00950000182863.A.b.a ##12	ENSGT00390000003305.d ##13	ENSGT00390000001515.i ##14	ENSGT00940000153769.F.n.a ##15	ENSGT00520000055667.e ##16	ENSGT00390000017400.a ##17	ENSGT00940000157619.a.a.c ##19	ENSGT00940000158423.i ##20	ENSGT00390000002799.h ##21	ENSGT00940000157203.c.a ##22	ENSGT00390000009464 #23	ENSGT00390000015248	ENSGT00940000156698.d.a ##24	ENSGT00900000141033.b.b.o.a ##26	ENSGT00900000141074.t ##27	ENSGT00390000008061.j.b.c.b.a.a ##28	ENSGT00940000177093	ENSGT00940000159441.k.f ##30	ENSGT01050000244814.b.b.b ##31	ENSGT00390000016654.u ##32	ENSGT00940000162969.i ##33	ENSGT00550000075124.g ##34	ENSGT01030000235056.a.b ##35	ENSGT00390000009864.b ##36	ENSGT00390000010577.b ##37
Goldfish	MODERN SPECIES	35	ENSCARG00000039278	rnf144b (ENSCARG00000039292)	upp1 (ENSCARG00000039324) ##7	stmn2a (ENSCARG00000039377) ##8	ENSCARG00000039390 ##9	ANKIB1 (ENSCARG00000039423) ##10	has2 (ENSCARG00000039506) ##11	sntb1 (ENSCARG00000039520) ##12	mrpl13 (ENSCARG00000039538) ##14	COL14A1 (ENSCARG00000039769) ##15	deptor (ENSCARG00000043410) ##16	dscc1 (ENSCARG00000043452) ##17	crabp2a (ENSCARG00000043578) ##19	ITGA10 (ENSCARG00000043627) ##20	polr3c (ENSCARG00000044180) ##21	rnf115a (ENSCARG00000044326) ##22	ENSCARG00000044398 ##24	ENSCARG00000044422 ##26	fdps (ENSCARG00000044457) ##27	ENSCARG00000044587 ##28	rcvrn2 (ENSCARG00000044591) ##30	ENSCARG00000044604 ##31	atg12 (ENSCARG00000044611) ##32	cdc42ep5 (ENSCARG00000044634) ##33	grwd1 (ENSCARG00000044638) ##34	zgc:174888 (ENSCARG00000044693) ##35	flcn (ENSCARG00000044733) ##36	ENSCARG00000045536	ENSCARG00000045573	josd2 (ENSCARG00000045631)	ube2s (ENSCARG00000045653)
Cyprininae_a	ANCESTRAL SPECIES	36	ENSGT01030000235080.b	ENSGT00940000157781.f ##7	ENSGT01030000234597.a.b.b.e.b.t.a.b ##8	ENSGT00940000164547.b.b.d ##9	ENSGT00940000157621.i ##10	ENSGT00390000010337.B.a.b.u ##11	ENSGT00950000182863.A.b.a ##12	ENSGT00390000003305.d ##13	ENSGT00390000001515.i ##14	ENSGT00940000153769.F.n.a ##15	ENSGT00520000055667.e ##16	ENSGT00390000017400.a ##17	ENSGT00940000157619.a.a.c ##19	ENSGT00940000158423.i ##20	ENSGT00390000002799.h ##21	ENSGT00940000157203.c.a ##22	ENSGT00390000015248	ENSGT00940000156698.d.a ##24	ENSGT00900000141033.b.b.o.a ##26	ENSGT00900000141074.t ##27	ENSGT00390000008061.j.b.c.b.a.a ##28	ENSGT00940000177093	ENSGT00940000159441.k.f ##30	ENSGT01050000244814.b.b.b ##31	ENSGT00390000016654.u ##32	ENSGT00940000162969.i ##33	ENSGT00550000075124.g ##34	ENSGT00390000009864.b ##36	ENSGT00390000010577.b ##37	ENSGT00950000183060.a.b.b.f	ENSGT00390000009228.a.a
Common carp reference	MODERN SPECIES	2	stmn2a (ENSCCRG00000054714) ##8	ENSCCRG00000071321 ##9	ENSCCRG00000052191 ##10	has2 (ENSCCRG00000076666) ##11	sntb1 (ENSCCRG00000005461) ##12	MTBP (ENSCCRG00000005425) ##13	mrpl13 (ENSCCRG00000076250) ##14	COL14A1 (ENSCCRG00000065350) ##15	ENSCCRG00000079224	deptor (ENSCCRG00000012964) ##16	dscc1 (ENSCCRG00000012960) ##17	crabp2a (ENSCCRG00000000451) ##19	ITGA10 (ENSCCRG00000029377) ##20	ENSCCRG00000074510	polr3c (ENSCCRG00000043910) ##21	rnf115a (ENSCCRG00000076214) ##22	dap3 (ENSCCRG00000043398)	ENSCCRG00000043356 ##24	trim109 (ENSCCRG00000081792) ##25	ENSCCRG00000001086 ##26	fdps (ENSCCRG00000001135) ##27	ENSCCRG00000001159 ##28	rcvrn2 (ENSCCRG00000074965) ##30	ENSCCRG00000066163 ##31	ENSCCRG00000072184	cdc42ep5 (ENSCCRG00000022129) ##33	grwd1 (ENSCCRG00000022133) ##34	zgc:174888 (ENSCCRG00000078473) ##35	ENSCCRG00000022139 ##37	ENSCCRG00000029521	josd2 (ENSCCRG00000053608)
Golden-line barbel	MODERN SPECIES	250													crabp2a (ENSSGRG00000025376) ##19	ITGA10 (ENSSGRG00000025369) ##20	polr3c (ENSSGRG00000025148) ##21	rnf115a (ENSSGRG00000025146) ##22	ENSSGRG00000025145 #23	GBA1 (ENSSGRG00000024991) #23	ENSSGRG00000024988	trim109 (ENSSGRG00000024985) ##25	ENSSGRG00000024981 ##26	fdps (ENSSGRG00000024955) ##27	ENSSGRG00000024954 ##28	ENSSGRG00000024953	rcvrn2 (ENSSGRG00000024952) ##30	ENSSGRG00000024951 ##31	atg12 (ENSSGRG00000024950) ##32	cdc42ep5 (ENSSGRG00000024949) ##33	grwd1 (ENSSGRG00000024930) ##34	flcn (ENSSGRG00000024779) ##36	leng9 (ENSSGRG00000024777) ##37