Mus	ANCESTRAL SPECIES	11	ENSGT01100000263574.a.f.a.f #7	ENSGT00730000111596 #8	ENSGT00940000162121 #9	ENSGT00940000162202.B #11	ENSGT00940000162202.A #12	ENSGT00940000164920	ENSGT00940000162388.A #13	ENSGT00940000162388.B #14	ENSGT00940000163803 #15	ENSGT00940000161726 #16	ENSGT00940000165147 #17	ENSGT00940000155808 #18	ENSGT00940000159544 #19	ENSGT00390000010327 #20	ENSGT00940000155687 #21	ENSGT00950000182837.b.a #22	ENSGT00940000155606.b #23	ENSGT00940000158666 #24	ENSGT00940000153804.B #25	ENSGT00940000159521 #26	ENSGT00950000183080.a.a #27	ENSGT00940000160653 #28	ENSGT00940000160329 #29	ENSGT00390000016495 #30	ENSGT00950000183019.f.b.a #31	ENSGT00940000156707 #32	ENSGT00940000161665 #33	ENSGT00940000161132 #34	ENSGT00390000007809.a #35	ENSGT00950000182825.A.a.b.a.b.a.b.b ##36	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##36
Mus_A	ANCESTRAL SPECIES	13	ENSGT01100000263574.a.f.a.e.b.a.a ##7	ENSGT00730000111596 #8	ENSGT00940000162121 #9	ENSGT00940000162202.B #11	ENSGT00940000162202.A #12	ENSGT00940000164920	ENSGT00940000162388.A #13	ENSGT00940000162388.B #14	ENSGT00940000163803 #15	ENSGT00940000161726 #16	ENSGT00940000165147 #17	ENSGT00940000155808 #18	ENSGT00940000159544 #19	ENSGT00390000010327 #20	ENSGT00940000155687 #21	ENSGT00950000182837.b.a #22	ENSGT00940000155606.b #23	ENSGT00940000158666 #24	ENSGT00940000153804.B #25	ENSGT00940000159521 #26	ENSGT00950000183080.a.a #27	ENSGT00940000160653 #28	ENSGT00940000160329 #29	ENSGT00390000016495 #30	ENSGT00950000183019.f.b.a #31	ENSGT00940000156707 #32	ENSGT00940000161665 #33	ENSGT00940000161132 #34	ENSGT00390000007809.a #35	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b #36	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##36
Mus_B	ANCESTRAL SPECIES	12	ENSGT00730000111596 #8	ENSGT00940000162121 #9	ENSGT00940000159881.b #10	ENSGT00940000162202.B #11	ENSGT00940000162202.A #12	ENSGT00940000164920	ENSGT00940000162388.A #13	ENSGT00940000162388.B #14	ENSGT00940000163803 #15	ENSGT00940000161726 #16	ENSGT00940000165147 #17	ENSGT00940000155808 #18	ENSGT00940000159544 #19	ENSGT00390000010327 #20	ENSGT00940000155687 #21	ENSGT00950000182837.b.a #22	ENSGT00940000155606.b #23	ENSGT00940000158666 #24	ENSGT00940000153804.B #25	ENSGT00940000159521 #26	ENSGT00950000183080.a.a #27	ENSGT00940000160653 #28	ENSGT00940000160329 #29	ENSGT00390000016495 #30	ENSGT00950000183019.f.b.a #31	ENSGT00940000156707 #32	ENSGT00940000161665 #33	ENSGT00940000161132 #34	ENSGT00390000007809.a #35	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b #36	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##36
Mouse	MODERN SPECIES	6	Or10ad1b (ENSMUSG00000059460) #7	H1f7 (ENSMUSG00000048077) #8	Zfp641 (ENSMUSG00000022987) #9	Or8s16 (ENSMUSG00000062037) #10	Or8s5 (ENSMUSG00000051793) #11	Or8s2 (ENSMUSG00000056184) #12	Or8s10 (ENSMUSG00000063780) #13	Or8s8 (ENSMUSG00000032987) #14	OR5BS1P (ENSMUSG00000108728) #15	Lalba (ENSMUSG00000022991) #16	Or11m3 (ENSMUSG00000054036) #17	Kansl2 (ENSMUSG00000022992) #18	Ccnt1 (ENSMUSG00000011960) #19	Tex49 (ENSMUSG00000022993) #20	Adcy6 (ENSMUSG00000022994) #21	Cacnb3 (ENSMUSG00000003352) #22	Ddx23 (ENSMUSG00000003360) #23	Rnd1 (ENSMUSG00000054855) #24	Ccdc65 (ENSMUSG00000003354) #25	Fkbp11 (ENSMUSG00000003355) #26	Arf3 (ENSMUSG00000051853) #27	Wnt10b (ENSMUSG00000022996) #28	Wnt1 (ENSMUSG00000022997) #29	Ddn (ENSMUSG00000059213) #30	Prkag1 (ENSMUSG00000067713) #31	Kmt2d (ENSMUSG00000048154) #32	Rhebl1 (ENSMUSG00000023755) #33	Dhh (ENSMUSG00000023000) #34	Lmbr1l (ENSMUSG00000022999) #35	Tuba1b (ENSMUSG00000023004) #36	Gm49450 (ENSMUSG00000116358) #37
Mus_C	ANCESTRAL SPECIES	17	ENSGT00730000111596 #8	ENSGT00940000162121 #9	ENSGT00940000159881.b #10	ENSGT00940000162202.B #11	ENSGT00940000162202.A #12	ENSGT00940000164920	ENSGT00940000162388.A #13	ENSGT00940000162388.B #14	ENSGT00940000163803 #15	ENSGT00940000161726 #16	ENSGT00940000165147 #17	ENSGT00940000155808 #18	ENSGT00940000159544 #19	ENSGT00390000010327 #20	ENSGT00940000155687 #21	ENSGT00950000182837.b.a #22	ENSGT00940000155606.b #23	ENSGT00940000158666 #24	ENSGT00940000153804.B #25	ENSGT00940000159521 #26	ENSGT00950000183080.a.a #27	ENSGT00940000160653 #28	ENSGT00940000160329 #29	ENSGT00390000016495 #30	ENSGT00950000183019.f.b.a #31	ENSGT00940000156707 #32	ENSGT00940000161665 #33	ENSGT00940000161132 #34	ENSGT00390000007809.a #35	ENSGT00950000182825.A.a.b.a.b.a.a.a.a.b #36	ENSGT00950000182825.A.a.b.a.b.a.b.a.b ##36
Steppe mouse	MODERN SPECIES	3092	Ccdc184 (ENSMSIG00000000285)	Or10ad1b (ENSMSIG00000000298) #7	H1f7 (ENSMSIG00000000314) #8	Zfp641 (ENSMSIG00000000347) #9	ENSMSIG00000000412 #10	ENSMSIG00000000424 #10	Or8s5 (ENSMSIG00000000437) #11	Or8s2 (ENSMSIG00000000448) #12	Or8s8 (ENSMSIG00000000461) #14	ENSMSIG00000000476 #15	Lalba (ENSMSIG00000000500) #16	Or11m3 (ENSMSIG00000000513) #17	Kansl2 (ENSMSIG00000000531) #18	Ccnt1 (ENSMSIG00000000619) #19	Adcy6 (ENSMSIG00000000695) #21	Cacnb3 (ENSMSIG00000000901) #22	Ddx23 (ENSMSIG00000001169) #23	Rnd1 (ENSMSIG00000001241) #24	Ccdc65 (ENSMSIG00000001269) #25	Arf3 (ENSMSIG00000001320) #27	Wnt10b (ENSMSIG00000001386) #28	Wnt1 (ENSMSIG00000001511) #29	Ddn (ENSMSIG00000001553) #30	Prkag1 (ENSMSIG00000001568) #31	ENSMSIG00000002088 #33	Dhh (ENSMSIG00000002172) #34	Lmbr1l (ENSMSIG00000002200) #35	ENSMSIG00000002356 #36	Tuba1a (ENSMSIG00000002382) ##36	Tuba1c (ENSMSIG00000002410) #36	Prph (ENSMSIG00000002429)
spretus	MODERN SPECIES	6	MGP_SPRETEiJ_G0021121 ##7	H1f7 (MGP_SPRETEiJ_G0021122) #8	Zfp641 (MGP_SPRETEiJ_G0021123) #9	MGP_SPRETEiJ_G0021124 #10	Or8s5 (MGP_SPRETEiJ_G0021125) #11	Or8s2 (MGP_SPRETEiJ_G0021126) #12	MGP_SPRETEiJ_G0021127	Or8s10 (MGP_SPRETEiJ_G0021128) #13	Or8s8 (MGP_SPRETEiJ_G0021129) #14	Lalba (MGP_SPRETEiJ_G0021130) #16	Or11m3 (MGP_SPRETEiJ_G0021131) #17	Kansl2 (MGP_SPRETEiJ_G0021132) #18	Ccnt1 (MGP_SPRETEiJ_G0021133) #19	Tex49 (MGP_SPRETEiJ_G0021134) #20	Adcy6 (MGP_SPRETEiJ_G0021135) #21	Cacnb3 (MGP_SPRETEiJ_G0021136) #22	Ddx23 (MGP_SPRETEiJ_G0021137) #23	Rnd1 (MGP_SPRETEiJ_G0021138) #24	Ccdc65 (MGP_SPRETEiJ_G0021139) #25	Fkbp11 (MGP_SPRETEiJ_G0021140) #26	Arf3 (MGP_SPRETEiJ_G0021141) #27	Wnt10b (MGP_SPRETEiJ_G0021142) #28	Wnt1 (MGP_SPRETEiJ_G0021143) #29	Ddn (MGP_SPRETEiJ_G0021144) #30	Prkag1 (MGP_SPRETEiJ_G0021145) #31	Kmt2d (MGP_SPRETEiJ_G0021146) #32	Rhebl1 (MGP_SPRETEiJ_G0021147) #33	Dhh (MGP_SPRETEiJ_G0021148) #34	Lmbr1l (MGP_SPRETEiJ_G0021149) #35	Prph (MGP_SPRETEiJ_G0021150)	Troap (MGP_SPRETEiJ_G0021151)
Ryukyu mouse	MODERN SPECIES	6	MGP_CAROLIEiJ_G0020224 ##7	MGP_CAROLIEiJ_G0020225 ##7	H1f7 (MGP_CAROLIEiJ_G0020226) #8	Zfp641 (MGP_CAROLIEiJ_G0020227) #9	Or8s5 (MGP_CAROLIEiJ_G0020228) #11	Or8s2 (MGP_CAROLIEiJ_G0020229) #12	MGP_CAROLIEiJ_G0020230	Or8s10 (MGP_CAROLIEiJ_G0020231) #13	Or8s8 (MGP_CAROLIEiJ_G0020232) #14	Lalba (MGP_CAROLIEiJ_G0020233) #16	Or11m3 (MGP_CAROLIEiJ_G0020234) #17	Kansl2 (MGP_CAROLIEiJ_G0020235) #18	Ccnt1 (MGP_CAROLIEiJ_G0020236) #19	Tex49 (MGP_CAROLIEiJ_G0020237) #20	Adcy6 (MGP_CAROLIEiJ_G0020238) #21	Cacnb3 (MGP_CAROLIEiJ_G0020239) #22	Ddx23 (MGP_CAROLIEiJ_G0020240) #23	Rnd1 (MGP_CAROLIEiJ_G0020241) #24	Ccdc65 (MGP_CAROLIEiJ_G0020242) #25	Fkbp11 (MGP_CAROLIEiJ_G0020243) #26	Arf3 (MGP_CAROLIEiJ_G0020244) #27	Wnt10b (MGP_CAROLIEiJ_G0020245) #28	Wnt1 (MGP_CAROLIEiJ_G0020246) #29	Ddn (MGP_CAROLIEiJ_G0020247) #30	Prkag1 (MGP_CAROLIEiJ_G0020248) #31	Kmt2d (MGP_CAROLIEiJ_G0020249) #32	Rhebl1 (MGP_CAROLIEiJ_G0020250) #33	Dhh (MGP_CAROLIEiJ_G0020251) #34	Lmbr1l (MGP_CAROLIEiJ_G0020252) #35	MGP_CAROLIEiJ_G0020253 #36	MGP_CAROLIEiJ_G0020254
Shrew mouse	MODERN SPECIES	8	MGP_PahariEiJ_G0020227 ##7	MGP_PahariEiJ_G0020228 ##7	H1f7 (MGP_PahariEiJ_G0020229) #8	Zfp641 (MGP_PahariEiJ_G0020230) #9	Or8s5 (MGP_PahariEiJ_G0020231) #11	Or8s2 (MGP_PahariEiJ_G0020232) #12	MGP_PahariEiJ_G0020233	Or8s10 (MGP_PahariEiJ_G0020234) #13	Or8s8 (MGP_PahariEiJ_G0020235) #14	Lalba (MGP_PahariEiJ_G0020236) #16	Or11m3 (MGP_PahariEiJ_G0020237) #17	Kansl2 (MGP_PahariEiJ_G0020238) #18	Ccnt1 (MGP_PahariEiJ_G0020239) #19	Tex49 (MGP_PahariEiJ_G0020240) #20	Adcy6 (MGP_PahariEiJ_G0020241) #21	Cacnb3 (MGP_PahariEiJ_G0020242) #22	Ddx23 (MGP_PahariEiJ_G0020243) #23	Rnd1 (MGP_PahariEiJ_G0020244) #24	Ccdc65 (MGP_PahariEiJ_G0020245) #25	Fkbp11 (MGP_PahariEiJ_G0020246) #26	Arf3 (MGP_PahariEiJ_G0020247) #27	Wnt10b (MGP_PahariEiJ_G0020248) #28	Wnt1 (MGP_PahariEiJ_G0020249) #29	Ddn (MGP_PahariEiJ_G0020250) #30	Prkag1 (MGP_PahariEiJ_G0020251) #31	Kmt2d (MGP_PahariEiJ_G0020252) #32	Rhebl1 (MGP_PahariEiJ_G0020253) #33	Dhh (MGP_PahariEiJ_G0020254) #34	Lmbr1l (MGP_PahariEiJ_G0020255) #35	MGP_PahariEiJ_G0020257 ##36	MGP_PahariEiJ_G0020256 ##36