Vertebrata	ANCESTRAL SPECIES	918																ENSGT00940000156167 #22	ENSGT00390000006983
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	77												ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Euteleostomi	ANCESTRAL SPECIES		ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00940000163251.b	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Sarcopterygii	ANCESTRAL SPECIES	54	ENSGT00390000012248	ENSGT00940000157885	ENSGT00390000004284	ENSGT00940000156530.c	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00660000097267	ENSGT00390000015405	ENSGT00390000009597	ENSGT00940000156327	ENSGT00940000156841	ENSGT00940000154556	ENSGT00940000154958	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36
Theria	ANCESTRAL SPECIES	6	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Primates	ANCESTRAL SPECIES	10	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Strepsirrhini	ANCESTRAL SPECIES	43	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Bushbaby	MODERN SPECIES	176	CASP3 (ENSOGAG00000005985) #7	IRF2 (ENSOGAG00000010966) #8	ENPP6 (ENSOGAG00000004801) #9	STOX2 (ENSOGAG00000004800) #10	TRAPPC11 (ENSOGAG00000027550) #11	RWDD4 (ENSOGAG00000016709) #12	ING2 (ENSOGAG00000016707) #13	CDKN2AIP (ENSOGAG00000026622) #14	WWC2 (ENSOGAG00000011913) #15	DCTD (ENSOGAG00000000583) #16	ENSOGAG00000005872 #17	ENSOGAG00000024359 #18	ENSOGAG00000032766 #19	AGA (ENSOGAG00000015190) #20	NEIL3 (ENSOGAG00000012624) #21	VEGFC (ENSOGAG00000003828) #22	SPCS3 (ENSOGAG00000003825) #23	ASB5 (ENSOGAG00000012227) #24	SPATA4 (ENSOGAG00000012224) #25	WDR17 (ENSOGAG00000012212) #26	GPM6A (ENSOGAG00000001624) #27	ENSOGAG00000025364 #28	ADAM29 (ENSOGAG00000015487) #29	GLRA3 (ENSOGAG00000015483) #30	HPGD (ENSOGAG00000004664) #31	CEP44 (ENSOGAG00000009295) #32	FBXO8 (ENSOGAG00000005533) #33	HAND2 (ENSOGAG00000027928) #34	SAP30 (ENSOGAG00000017151) #35	HMGB2 (ENSOGAG00000017149) #36	GALNT7 (ENSOGAG00000017148) #37
Lemuriformes	ANCESTRAL SPECIES	71														ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Lemuriformes_a	ANCESTRAL SPECIES	149														ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Coquerels sifaka	MODERN SPECIES	503														AGA (ENSPCOG00000026778) #20	NEIL3 (ENSPCOG00000010888) #21	VEGFC (ENSPCOG00000022578) #22	SPCS3 (ENSPCOG00000028475) #23	ASB5 (ENSPCOG00000007349) #24	SPATA4 (ENSPCOG00000026747) #25	ENSPCOG00000016498	GPM6A (ENSPCOG00000015954) #27	GLRA3 (ENSPCOG00000013736) #30	HPGD (ENSPCOG00000028082) #31	CEP44 (ENSPCOG00000014703) #32	FBXO8 (ENSPCOG00000017578) #33	HAND2 (ENSPCOG00000007675) #34	SAP30 (ENSPCOG00000024121) #35	ENSPCOG00000015461 #36	GALNT7 (ENSPCOG00000013927) #37	GALNTL6 (ENSPCOG00000024025)	BARX2 (ENSPCOG00000028693)
Greater bamboo lemur	MODERN SPECIES	127														AGA (ENSPSMG00000020309) #20	NEIL3 (ENSPSMG00000020303) #21	VEGFC (ENSPSMG00000020286) #22	SPCS3 (ENSPSMG00000020259) #23	ASB5 (ENSPSMG00000020252) #24	SPATA4 (ENSPSMG00000020238) #25	WDR17 (ENSPSMG00000020226) #26	GPM6A (ENSPSMG00000020158) #27	ENSPSMG00000020137	ENSPSMG00000020126 #29	GLRA3 (ENSPSMG00000020114) #30	HPGD (ENSPSMG00000020069) #31	CEP44 (ENSPSMG00000020017) #32	FBXO8 (ENSPSMG00000019948) #33	HAND2 (ENSPSMG00000019893) #34	SCRG1 (ENSPSMG00000019876)	SAP30 (ENSPSMG00000019866) #35	HMGB2 (ENSPSMG00000019855) #36
Mouse lemur	MODERN SPECIES	5	PRIMPOL (ENSMICG00000004817)	ENSMICG00000004809 #7	IRF2 (ENSMICG00000015506) #8	ENPP6 (ENSMICG00000015491) #9	STOX2 (ENSMICG00000015479) #10	TRAPPC11 (ENSMICG00000000688) #11	RWDD4 (ENSMICG00000000687) #12	ING2 (ENSMICG00000001324) #13	CDKN2AIP (ENSMICG00000047516) #14	WWC2 (ENSMICG00000014921) #15	ENSMICG00000035945 #18	ENSMICG00000035656 #18	ENSMICG00000035005	AGA (ENSMICG00000009153) #20	NEIL3 (ENSMICG00000009147) #21	VEGFC (ENSMICG00000031537) #22	SPCS3 (ENSMICG00000045665) #23	ASB5 (ENSMICG00000035551) #24	SPATA4 (ENSMICG00000001985) #25	WDR17 (ENSMICG00000001970) #26	GPM6A (ENSMICG00000003037) #27	ADAM29 (ENSMICG00000032176) #29	GLRA3 (ENSMICG00000012219) #30	HPGD (ENSMICG00000014923) #31	CEP44 (ENSMICG00000009966) #32	FBXO8 (ENSMICG00000009959) #33	HAND2 (ENSMICG00000046152) #34	SCRG1 (ENSMICG00000008612)	SAP30 (ENSMICG00000028650) #35	HMGB2 (ENSMICG00000043425) #36	GALNT7 (ENSMICG00000016467) #37
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00940000153232.a.b.o.a #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223.hb #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Cebidae	ANCESTRAL SPECIES	4	ENSGT00940000153232.a.b.o.a #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223.hb #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Cebidae_a	ANCESTRAL SPECIES	75	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b.o.a #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223.hb #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Capuchin	MODERN SPECIES	141											ENSCCAG00000026845	ENSCCAG00000032205	AGA (ENSCCAG00000013622) #20	NEIL3 (ENSCCAG00000018838) #21	ENSCCAG00000005362	VEGFC (ENSCCAG00000022899) #22	ENSCCAG00000014046 #23	ASB5 (ENSCCAG00000022034) #24	SPATA4 (ENSCCAG00000007967) #25	WDR17 (ENSCCAG00000034146) #26	ENSCCAG00000028405	GTSF1L (ENSCCAG00000023964)	MYBL2 (ENSCCAG00000026045)	IFT52 (ENSCCAG00000022647)	ENSCCAG00000030016	L3MBTL1 (ENSCCAG00000034693)	SRSF6 (ENSCCAG00000026018)	PTPRT (ENSCCAG00000021139)
Bolivian squirrel monkey	MODERN SPECIES	102	ENSSBOG00000020561	IRF2 (ENSSBOG00000023860) #8	ENPP6 (ENSSBOG00000025699) #9	STOX2 (ENSSBOG00000022049) #10	TRAPPC11 (ENSSBOG00000001467) #11	RWDD4 (ENSSBOG00000019970) #12	ING2 (ENSSBOG00000028567) #13	CDKN2AIP (ENSSBOG00000017285) #14	WWC2 (ENSSBOG00000016007) #15	ENSSBOG00000024426	ENSSBOG00000026812	DCTD (ENSSBOG00000015125) #16	TENM3 (ENSSBOG00000033110) #18	AGA (ENSSBOG00000023573) #20	NEIL3 (ENSSBOG00000032601) #21	VEGFC (ENSSBOG00000033122) #22	SPCS3 (ENSSBOG00000019414) #23	ASB5 (ENSSBOG00000033408) #24	SPATA4 (ENSSBOG00000028949) #25	WDR17 (ENSSBOG00000014364) #26	GPM6A (ENSSBOG00000035003) #27	ENSSBOG00000013542	ADAM29 (ENSSBOG00000031942) #29	GLRA3 (ENSSBOG00000024266) #30	HPGD (ENSSBOG00000018359) #31
Marmoset	MODERN SPECIES	15	ENSCJAG00000063903	ING2 (ENSCJAG00000005602) #13	CDKN2AIP (ENSCJAG00000005591) #14	CLDN24 (ENSCJAG00000044314)	CLDN22 (ENSCJAG00000005586)	WWC2 (ENSCJAG00000005554) #15	ENSCJAG00000078649	DCTD (ENSCJAG00000005526) #16	ENSCJAG00000070774	TENM3 (ENSCJAG00000005501) #18	ENSCJAG00000054220	ENSCJAG00000040263	ENSCJAG00000053898	AGA (ENSCJAG00000005476) #20	NEIL3 (ENSCJAG00000005464) #21	VEGFC (ENSCJAG00000039809) #22	SPCS3 (ENSCJAG00000073297) #23	ASB5 (ENSCJAG00000005400) #24	SPATA4 (ENSCJAG00000005386) #25	WDR17 (ENSCJAG00000005304) #26	GPM6A (ENSCJAG00000005275) #27	ADAM29 (ENSCJAG00000005263) #29	GLRA3 (ENSCJAG00000005246) #30	HPGD (ENSCJAG00000005216) #31	CEP44 (ENSCJAG00000005195) #32	ENSCJAG00000085401	FBXO8 (ENSCJAG00000045228) #33	ENSCJAG00000080613	HAND2 (ENSCJAG00000069132) #34	SCRG1 (ENSCJAG00000005138)	SAP30 (ENSCJAG00000065744) #35
Mas night monkey	MODERN SPECIES	440													AGA (ENSANAG00000027507) #20	ENSANAG00000019726	NEIL3 (ENSANAG00000026464) #21	VEGFC (ENSANAG00000036467) #22	SPCS3 (ENSANAG00000035149) #23	ASB5 (ENSANAG00000027949) #24	SPATA4 (ENSANAG00000038432) #25	WDR17 (ENSANAG00000036299) #26
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000153232.a.b #7	ENSGT00730000111223.j	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466.rb #36
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194.c #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00390000013266.b	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Hominidae	ANCESTRAL SPECIES	12	ENSGT00730000111223.j	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194.c #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466.rb #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194.c #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00390000010285.c.ac	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00860000136092	ENSGT00390000009191	ENSGT00390000006633.b #35
Gorilla	MODERN SPECIES	17	ENSGGOG00000036205	IRF2 (ENSGGOG00000016559) #8	STOX2 (ENSGGOG00000013917) #10	ENSGGOG00000036530 #11	RWDD4 (ENSGGOG00000011982) #12	ING2 (ENSGGOG00000041782) #13	CDKN2AIP (ENSGGOG00000022072) #14	CLDN24 (ENSGGOG00000043794)	CLDN22 (ENSGGOG00000043233)	WWC2 (ENSGGOG00000009849) #15	ENSGGOG00000038808	DCTD (ENSGGOG00000016412) #16	TENM3 (ENSGGOG00000011344) #18	AGA (ENSGGOG00000007600) #20	NEIL3 (ENSGGOG00000016799) #21	ENSGGOG00000040176 #22	SPCS3 (ENSGGOG00000023323) #23	ASB5 (ENSGGOG00000009089) #24	SPATA4 (ENSGGOG00000001066) #25	WDR17 (ENSGGOG00000010477) #26	GPM6A (ENSGGOG00000002629) #27	ADAM29 (ENSGGOG00000011350) #29	GLRA3 (ENSGGOG00000006359) #30	HPGD (ENSGGOG00000009878) #31	CEP44 (ENSGGOG00000025044) #32	FBXO8 (ENSGGOG00000005344) #33	ENSGGOG00000024847	HAND2 (ENSGGOG00000006147) #34	ENSGGOG00000012612	SCRG1 (ENSGGOG00000025633)	SAP30 (ENSGGOG00000005082) #35
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194.c #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00390000010285.c.ac	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00860000136092	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466.rb #36
Human	MODERN SPECIES	16	CASP3 (ENSG00000164305) #7	IRF2 (ENSG00000168310) #8	ENPP6 (ENSG00000164303) #9	STOX2 (ENSG00000173320) #10	TRAPPC11 (ENSG00000168538) #11	RWDD4 (ENSG00000182552) #12	ING2 (ENSG00000168556) #13	CDKN2AIP (ENSG00000168564) #14	CLDN24 (ENSG00000185758)	CLDN22 (ENSG00000177300)	WWC2 (ENSG00000151718) #15	DCTD (ENSG00000129187) #16	TENM3 (ENSG00000218336) #18	AGA (ENSG00000038002) #20	NEIL3 (ENSG00000109674) #21	VEGFC (ENSG00000150630) #22	SPCS3 (ENSG00000129128) #23	ASB5 (ENSG00000164122) #24	SPATA4 (ENSG00000150628) #25	WDR17 (ENSG00000150627) #26	GPM6A (ENSG00000150625) #27	ADAM29 (ENSG00000168594) #29	GLRA3 (ENSG00000145451) #30	HPGD (ENSG00000164120) #31	CEP44 (ENSG00000164118) #32	FBXO8 (ENSG00000164117) #33	HAND2 (ENSG00000164107) #34	SCRG1 (ENSG00000164106)	SAP30 (ENSG00000164105) #35	HMGB2 (ENSG00000164104) #36	GALNT7 (ENSG00000109586) #37
Pan	ANCESTRAL SPECIES	7	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194.c #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00950000186328	ENSGT00410000025556.a.a.a.b #15	ENSGT00390000010285.c.ac	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00390000013266.b	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00950000182965.a.b.b.b.g.b.a.a	ENSGT00940000160772 #34	ENSGT00860000136092
Bonobo	MODERN SPECIES	17	IRF2 (ENSPPAG00000034580) #8	ENPP6 (ENSPPAG00000034444) #9	STOX2 (ENSPPAG00000019640) #10	TRAPPC11 (ENSPPAG00000028586) #11	RWDD4 (ENSPPAG00000041963) #12	ING2 (ENSPPAG00000042163) #13	CDKN2AIP (ENSPPAG00000040121) #14	CLDN24 (ENSPPAG00000034097)	ENSPPAG00000021015	WWC2 (ENSPPAG00000040062) #15	ENSPPAG00000037373	DCTD (ENSPPAG00000022425) #16	TENM3 (ENSPPAG00000038117) #18	AGA (ENSPPAG00000036906) #20	NEIL3 (ENSPPAG00000035318) #21	VEGFC (ENSPPAG00000043349) #22	ENSPPAG00000035990 #23	ASB5 (ENSPPAG00000034799) #24	SPATA4 (ENSPPAG00000034537) #25	WDR17 (ENSPPAG00000043468) #26	GPM6A (ENSPPAG00000042891) #27	ENSPPAG00000034639	ADAM29 (ENSPPAG00000014578) #29	GLRA3 (ENSPPAG00000036427) #30	HPGD (ENSPPAG00000040053) #31	CEP44 (ENSPPAG00000031462) #32	FBXO8 (ENSPPAG00000035822) #33	ENSPPAG00000026731	ENSPPAG00000010368	ENSPPAG00000017140	ENSPPAG00000012097 #34
Chimpanzee	MODERN SPECIES	17	ENPP6 (ENSPTRG00000016636) #9	STOX2 (ENSPTRG00000016634) #10	TRAPPC11 (ENSPTRG00000016633) #11	RWDD4 (ENSPTRG00000016632) #12	ING2 (ENSPTRG00000016631) #13	CDKN2AIP (ENSPTRG00000016629) #14	CLDN24 (ENSPTRG00000016628)	CLDN22 (ENSPTRG00000016627)	ENSPTRG00000044853	WWC2 (ENSPTRG00000016626) #15	ENSPTRG00000050006	DCTD (ENSPTRG00000016624) #16	TENM3 (ENSPTRG00000016622) #18	AGA (ENSPTRG00000016618) #20	NEIL3 (ENSPTRG00000016617) #21	VEGFC (ENSPTRG00000016616) #22	SPCS3 (ENSPTRG00000016615) #23	ASB5 (ENSPTRG00000016614) #24	SPATA4 (ENSPTRG00000016612) #25	WDR17 (ENSPTRG00000016611) #26	GPM6A (ENSPTRG00000016609) #27	ENSPTRG00000050820	ADAM29 (ENSPTRG00000016608) #29	GLRA3 (ENSPTRG00000016607) #30	HPGD (ENSPTRG00000016606) #31	CEP44 (ENSPTRG00000016605) #32	FBXO8 (ENSPTRG00000016604) #33	ENSPTRG00000046852	ENSPTRG00000045495	HAND2 (ENSPTRG00000016601) #34	ENSPTRG00000046676
Orangutan	MODERN SPECIES	17	IRF2 (ENSPPYG00000036054) #8	ENSPPYG00000033949	ENPP6 (ENSPPYG00000015233) #9	STOX2 (ENSPPYG00000015232) #10	TRAPPC11 (ENSPPYG00000015231) #11	RWDD4 (ENSPPYG00000015230) #12	ING2 (ENSPPYG00000015229) #13	CDKN2AIP (ENSPPYG00000015228) #14	CLDN24 (ENSPPYG00000015226)	CLDN22 (ENSPPYG00000015225)	WWC2 (ENSPPYG00000015224) #15	ENSPPYG00000015223 #16	TENM3 (ENSPPYG00000029729) #18	AGA (ENSPPYG00000015220) #20	NEIL3 (ENSPPYG00000040336) #21	VEGFC (ENSPPYG00000015219) #22	SPCS3 (ENSPPYG00000038635) #23	ASB5 (ENSPPYG00000015217) #24	SPATA4 (ENSPPYG00000015216) #25	WDR17 (ENSPPYG00000015215) #26	GPM6A (ENSPPYG00000015214) #27	ADAM29 (ENSPPYG00000015277) #29	GLRA3 (ENSPPYG00000015213) #30	HPGD (ENSPPYG00000015212) #31	CEP44 (ENSPPYG00000015211) #32	FBXO8 (ENSPPYG00000015210) #33	ENSPPYG00000036877	HAND2 (ENSPPYG00000039964) #34	SCRG1 (ENSPPYG00000015206)	SAP30 (ENSPPYG00000015205) #35	HMGB2 (ENSPPYG00000015204) #36
Gibbon	MODERN SPECIES	22	ENPP6 (ENSNLEG00000029143) #9	STOX2 (ENSNLEG00000010803) #10	TRAPPC11 (ENSNLEG00000010773) #11	RWDD4 (ENSNLEG00000034868) #12	ING2 (ENSNLEG00000035063) #13	ENSNLEG00000033474	CDKN2AIP (ENSNLEG00000010720) #14	CLDN24 (ENSNLEG00000018868)	CLDN22 (ENSNLEG00000018867)	WWC2 (ENSNLEG00000010629) #15	DCTD (ENSNLEG00000032116) #16	ENSNLEG00000033001	TENM3 (ENSNLEG00000010584) #18	AGA (ENSNLEG00000016825) #20	NEIL3 (ENSNLEG00000016818) #21	VEGFC (ENSNLEG00000016806) #22	ENSNLEG00000016805 #23	ASB5 (ENSNLEG00000016797) #24	SPATA4 (ENSNLEG00000016788) #25	WDR17 (ENSNLEG00000016773) #26	GPM6A (ENSNLEG00000016762) #27	ENSNLEG00000033166	ENSNLEG00000016761	ADAM29 (ENSNLEG00000006715) #29	GLRA3 (ENSNLEG00000006711) #30	HPGD (ENSNLEG00000006696) #31	CEP44 (ENSNLEG00000006689) #32	FBXO8 (ENSNLEG00000006678) #33	ENSNLEG00000027690	HAND2 (ENSNLEG00000006670) #34	SCRG1 (ENSNLEG00000006669)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000153232.a.b #7	ENSGT00730000111223.j	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Macaca	ANCESTRAL SPECIES	18	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000153786.e.a.a	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.b.b.b.a.a	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.b.a.b.a.a.a.a	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.b.b.b.d.a.a	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466.rb.a #36
Crab-eating macaque	MODERN SPECIES	15	TRAPPC11 (ENSMFAG00000039616) #11	ENSMFAG00000000543 #12	ENSMFAG00000052775	ING2 (ENSMFAG00000032816) #13	CDKN2AIP (ENSMFAG00000046173) #14	ENSMFAG00000064058	CLDN24 (ENSMFAG00000008066)	CLDN22 (ENSMFAG00000012673)	WWC2 (ENSMFAG00000033741) #15	DCTD (ENSMFAG00000034653) #16	ENSMFAG00000001427 #18	ENSMFAG00000056147 #18	ENSMFAG00000054145	AGA (ENSMFAG00000003729) #20	NEIL3 (ENSMFAG00000002547) #21	VEGFC (ENSMFAG00000003745) #22	ENSMFAG00000049264	SPCS3 (ENSMFAG00000001302) #23	ASB5 (ENSMFAG00000000562) #24	SPATA4 (ENSMFAG00000033699) #25	ENSMFAG00000062819	WDR17 (ENSMFAG00000043874) #26	GPM6A (ENSMFAG00000030986) #27	ADAM29 (ENSMFAG00000038871) #29	GLRA3 (ENSMFAG00000034554) #30	HPGD (ENSMFAG00000041220) #31	CEP44 (ENSMFAG00000003438) #32	FBXO8 (ENSMFAG00000034344) #33	ENSMFAG00000055873	HAND2 (ENSMFAG00000046008) #34	SCRG1 (ENSMFAG00000038499)
Rhesus	MODERN SPECIES	15	TRAPPC11 (ENSMMUG00000023651) #11	RWDD4 (ENSMMUG00000023650) #12	ING2 (ENSMMUG00000008881) #13	CDKN2AIP (ENSMMUG00000002004) #14	ENSMMUG00000049670	ENSMMUG00000055157	CLDN24 (ENSMMUG00000030008)	CLDN22 (ENSMMUG00000015745)	WWC2 (ENSMMUG00000015748) #15	DCTD (ENSMMUG00000000284) #16	TENM3 (ENSMMUG00000007240) #18	ENSMMUG00000058974	ENSMMUG00000059103	AGA (ENSMMUG00000007393) #20	NEIL3 (ENSMMUG00000007394) #21	VEGFC (ENSMMUG00000003748) #22	ENSMMUG00000056931	SPCS3 (ENSMMUG00000064613) #23	ASB5 (ENSMMUG00000013736) #24	SPATA4 (ENSMMUG00000013733) #25	WDR17 (ENSMMUG00000013730) #26	GPM6A (ENSMMUG00000007814) #27	ADAM29 (ENSMMUG00000061083) #29	GLRA3 (ENSMMUG00000008868) #30	HPGD (ENSMMUG00000020408) #31	CEP44 (ENSMMUG00000001743) #32	FBXO8 (ENSMMUG00000002331) #33	HAND2 (ENSMMUG00000048816) #34	SCRG1 (ENSMMUG00000002399)	SAP30 (ENSMMUG00000002401) #35	HMGB2 (ENSMMUG00000003187) #36
Pig-tailed macaque	MODERN SPECIES	375	IRF2 (ENSMNEG00000034903) #8	ENPP6 (ENSMNEG00000035672) #9	STOX2 (ENSMNEG00000044751) #10	TRAPPC11 (ENSMNEG00000043814) #11	RWDD4 (ENSMNEG00000029331) #12	ING2 (ENSMNEG00000045559) #13	ENSMNEG00000036223	ENSMNEG00000023135	CDKN2AIP (ENSMNEG00000032207) #14	CLDN22 (ENSMNEG00000042661)	WWC2 (ENSMNEG00000034065) #15	DCTD (ENSMNEG00000033220) #16	TENM3 (ENSMNEG00000030271) #18	AGA (ENSMNEG00000037318) #20	NEIL3 (ENSMNEG00000036177) #21	VEGFC (ENSMNEG00000045119) #22	SPCS3 (ENSMNEG00000036272) #23	ASB5 (ENSMNEG00000034889) #24	SPATA4 (ENSMNEG00000033332) #25	WDR17 (ENSMNEG00000033941) #26	GPM6A (ENSMNEG00000042014) #27	GLRA3 (ENSMNEG00000035116) #30	HPGD (ENSMNEG00000040489) #31	ENSMNEG00000043522	CEP44 (ENSMNEG00000012365) #32	FBXO8 (ENSMNEG00000043927) #33	ENSMNEG00000036274	ENSMNEG00000045386	HAND2 (ENSMNEG00000039463) #34	SCRG1 (ENSMNEG00000032472)	SAP30 (ENSMNEG00000039771) #35
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466.rb.a #36	ENSGT00940000158105 #37
Olive baboon	MODERN SPECIES	13	ENSPANG00000049160	CDKN2AIP (ENSPANG00000024476) #14	ENSPANG00000048078	ENSPANG00000040919	CLDN24 (ENSPANG00000004497)	CLDN22 (ENSPANG00000006467)	ENSPANG00000050861 #15	ENSPANG00000040899 #15	DCTD (ENSPANG00000018020) #16	ENSPANG00000045902	TENM3 (ENSPANG00000000764) #18	ENSPANG00000038381	AGA (ENSPANG00000008027) #20	NEIL3 (ENSPANG00000014727) #21	ENSPANG00000045708	VEGFC (ENSPANG00000038064) #22	SPCS3 (ENSPANG00000005000) #23	ASB5 (ENSPANG00000019807) #24	SPATA4 (ENSPANG00000008029) #25	WDR17 (ENSPANG00000018056) #26	GPM6A (ENSPANG00000024619) #27	ENSPANG00000049567	ENSPANG00000038055 #29	GLRA3 (ENSPANG00000019809) #30	HPGD (ENSPANG00000019812) #31	CEP44 (ENSPANG00000011904) #32	FBXO8 (ENSPANG00000007876) #33	POLR3K (ENSPANG00000010715)	HAND2 (ENSPANG00000023378) #34	SCRG1 (ENSPANG00000011779)	SAP30 (ENSPANG00000005972) #35
Cercopithecinae_d	ANCESTRAL SPECIES	21	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00950000183192.a.a.y.b.b	ENSGT00910000147875	ENSGT00940000158376 #14	ENSGT00940000162234.y	ENSGT00940000162234.z	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466.rb.a #36	ENSGT00940000158105 #37
Sooty mangabey	MODERN SPECIES	272	STOX2 (ENSCATG00000014156) #10	TRAPPC11 (ENSCATG00000004022) #11	RWDD4 (ENSCATG00000034736) #12	ING2 (ENSCATG00000038558) #13	ENSCATG00000030466	ENSCATG00000039580	CDKN2AIP (ENSCATG00000018192) #14	CLDN24 (ENSCATG00000005875)	WWC2 (ENSCATG00000036789) #15	CLDN22 (ENSCATG00000020839)	DCTD (ENSCATG00000035278) #16	TENM3 (ENSCATG00000040062) #18	ENSCATG00000024803 #18	AGA (ENSCATG00000038636) #20	NEIL3 (ENSCATG00000033777) #21	VEGFC (ENSCATG00000040718) #22	SPCS3 (ENSCATG00000019740) #23	ASB5 (ENSCATG00000033982) #24	SPATA4 (ENSCATG00000012381) #25	WDR17 (ENSCATG00000019324) #26	GPM6A (ENSCATG00000039800) #27	GLRA3 (ENSCATG00000030144) #30	HPGD (ENSCATG00000000045) #31	ENSCATG00000038865	CEP44 (ENSCATG00000032368) #32	FBXO8 (ENSCATG00000042187) #33	HAND2 (ENSCATG00000043828) #34	SCRG1 (ENSCATG00000034185)	SAP30 (ENSCATG00000035487) #35	GALNT7 (ENSCATG00000042532) #37	GALNTL6 (ENSCATG00000034550)
Drill	MODERN SPECIES	926														AGA (ENSMLEG00000030332) #20	NEIL3 (ENSMLEG00000035532) #21	VEGFC (ENSMLEG00000044161) #22
Vervet Monkey	MODERN SPECIES	26	ENPP6 (ENSCSAG00000003012) #9	STOX2 (ENSCSAG00000003014) #10	TRAPPC11 (ENSCSAG00000003019) #11	RWDD4 (ENSCSAG00000003024) #12	ING2 (ENSCSAG00000003025) #13	CDKN2AIP (ENSCSAG00000003030) #14	CLDN24 (ENSCSAG00000000094)	CLDN22 (ENSCSAG00000000096)	WWC2 (ENSCSAG00000003034) #15	DCTD (ENSCSAG00000003039) #16	TENM3 (ENSCSAG00000003045) #18	ENSCSAG00000003051	AGA (ENSCSAG00000003060) #20	NEIL3 (ENSCSAG00000003064) #21	ENSCSAG00000003067	VEGFC (ENSCSAG00000003070) #22	SPCS3 (ENSCSAG00000003075) #23	ASB5 (ENSCSAG00000003079) #24	SPATA4 (ENSCSAG00000003081) #25	WDR17 (ENSCSAG00000003086) #26	GPM6A (ENSCSAG00000003087) #27	ADAM29 (ENSCSAG00000003088) #29	GLRA3 (ENSCSAG00000003089) #30	HPGD (ENSCSAG00000003090) #31	CEP44 (ENSCSAG00000003091) #32	FBXO8 (ENSCSAG00000003092) #33	HAND2 (ENSCSAG00000003094) #34	SCRG1 (ENSCSAG00000003096)	SAP30 (ENSCSAG00000003099) #35	HMGB2 (ENSCSAG00000003100) #36	GALNT7 (ENSCSAG00000003101) #37
Rhinopithecus	ANCESTRAL SPECIES	405														ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000008820.e.b.a.b.a	ENSGT00390000009873 #32
Golden snub-nosed monkey	MODERN SPECIES	2470														AGA (ENSRROG00000027885) #20	NEIL3 (ENSRROG00000000069) #21	VEGFC (ENSRROG00000029581) #22	SPCS3 (ENSRROG00000039858) #23	ASB5 (ENSRROG00000040383) #24	SPATA4 (ENSRROG00000034681) #25	WDR17 (ENSRROG00000031418) #26	GPM6A (ENSRROG00000030213) #27
Black snub-nosed monkey	MODERN SPECIES	620													ENSRBIG00000000377	AGA (ENSRBIG00000026827) #20	NEIL3 (ENSRBIG00000023002) #21	VEGFC (ENSRBIG00000000893) #22	SPCS3 (ENSRBIG00000033432) #23	ASB5 (ENSRBIG00000039083) #24	SPATA4 (ENSRBIG00000030092) #25	WDR17 (ENSRBIG00000038741) #26	GPM6A (ENSRBIG00000031122) #27	ENSRBIG00000023981 #29	GLRA3 (ENSRBIG00000025644) #30	HPGD (ENSRBIG00000008662) #31	ENSRBIG00000036092	ENSRBIG00000029834 #32
Tarsier	MODERN SPECIES	1351																VEGFC (ENSTSYG00000001754) #22
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Glires	ANCESTRAL SPECIES	8	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Rodentia	ANCESTRAL SPECIES	21	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Rodentia_B	ANCESTRAL SPECIES	24	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Myomorpha	ANCESTRAL SPECIES	29	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Muroidea	ANCESTRAL SPECIES	26	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Muroidea_A	ANCESTRAL SPECIES	26	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.h	ENSGT00940000162234	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Cricetidae	ANCESTRAL SPECIES	23	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Cricetinae	ANCESTRAL SPECIES	25	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27
Chinese hamster chok1gshd	MODERN SPECIES	1	Irf2 (ENSCGRG00001014578) #8	ENSCGRG00001014136	Enpp6 (ENSCGRG00001013812) #9	Stox2 (ENSCGRG00001013096) #10	ENSCGRG00001003901	Trappc11 (ENSCGRG00001018304) #11	Rwdd4a (ENSCGRG00001018945) #12	Ing2 (ENSCGRG00001017801) #13	Cdkn2aip (ENSCGRG00001016194) #14	ENSCGRG00001015210	Wwc2 (ENSCGRG00001016882) #15	Dctd (ENSCGRG00001016053) #16	Tenm3 (ENSCGRG00001021107) #18	Aga (ENSCGRG00001019108) #20	Neil3 (ENSCGRG00001018596) #21	Vegfc (ENSCGRG00001014310) #22	Spcs3 (ENSCGRG00001013944) #23	Asb5 (ENSCGRG00001013169) #24	Spata4 (ENSCGRG00001012374) #25	Wdr17 (ENSCGRG00001010983) #26	Gpm6a (ENSCGRG00001007305) #27	ENSCGRG00001004858
Golden Hamster	MODERN SPECIES	624	Enpp6 (ENSMAUG00000007201) #9	Stox2 (ENSMAUG00000019263) #10	Trappc11 (ENSMAUG00000009056) #11	Rwdd4a (ENSMAUG00000001169) #12	Ing2 (ENSMAUG00000012553) #13	ENSMAUG00000019930	Cldn24 (ENSMAUG00000022185)	Cldn22 (ENSMAUG00000009702)	ENSMAUG00000019841 #15	ENSMAUG00000020907 #15	ENSMAUG00000018016	Dctd (ENSMAUG00000015286) #16	ENSMAUG00000019767 #18	ENSMAUG00000010963	ENSMAUG00000018923	Vegfc (ENSMAUG00000022111) #22	Spcs3 (ENSMAUG00000010908) #23	Asb5 (ENSMAUG00000020509) #24	Spata4 (ENSMAUG00000020002) #25	ENSMAUG00000011217	ENSMAUG00000021673 #26	ENSMAUG00000021221	ENSMAUG00000001140 #27
Cricetidae_B	ANCESTRAL SPECIES	17	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35
Prairie vole	MODERN SPECIES	356	Stox2 (ENSMOCG00000006233) #10	Trappc11 (ENSMOCG00000015798) #11	Rwdd4a (ENSMOCG00000002163) #12	ENSMOCG00000004967	Ing2 (ENSMOCG00000005078) #13	Cdkn2aip (ENSMOCG00000016713) #14	ENSMOCG00000008252	Cldn22 (ENSMOCG00000006954)	ENSMOCG00000003820 #15	ENSMOCG00000005387 #15	Dctd (ENSMOCG00000015038) #16	Tenm3 (ENSMOCG00000020342) #18	Aga (ENSMOCG00000014844) #20	ENSMOCG00000018728	ENSMOCG00000007262	Vegfc (ENSMOCG00000021548) #22	Spcs3 (ENSMOCG00000022872) #23	Asb5 (ENSMOCG00000022930) #24	Spata4 (ENSMOCG00000003714) #25	ENSMOCG00000015690	ENSMOCG00000016833 #26	ENSMOCG00000020494	Gpm6a (ENSMOCG00000021010) #27
Northern American deer mouse	MODERN SPECIES	8	ENSPEMG00000025263	Stox2 (ENSPEMG00000006925) #10	ENSPEMG00000009669	Trappc11 (ENSPEMG00000011449) #11	Rwdd4a (ENSPEMG00000015398) #12	ENSPEMG00000025926	Ing2 (ENSPEMG00000000125) #13	Cdkn2aip (ENSPEMG00000026992) #14	Wwc2 (ENSPEMG00000029499) #15	Dctd (ENSPEMG00000011762) #16	Tenm3 (ENSPEMG00000017497) #18	ENSPEMG00000029482	ENSPEMG00000027794	Aga (ENSPEMG00000025796) #20	Neil3 (ENSPEMG00000016548) #21	Vegfc (ENSPEMG00000017806) #22	Spcs3 (ENSPEMG00000029258) #23	Asb5 (ENSPEMG00000000734) #24	Spata4 (ENSPEMG00000006534) #25	Wdr17 (ENSPEMG00000012332) #26	Gpm6a (ENSPEMG00000029351) #27	ENSPEMG00000024737	ENSPEMG00000028325	Adam29 (ENSPEMG00000013490) #29	Glra3 (ENSPEMG00000028664) #30	Hpgd (ENSPEMG00000000284) #31	Cep44 (ENSPEMG00000002959) #32	Fbxo8 (ENSPEMG00000009379) #33	ENSPEMG00000029214	Hand2 (ENSPEMG00000010233) #34	ENSPEMG00000014184
Murinae	ANCESTRAL SPECIES	23	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Mus	ANCESTRAL SPECIES	6	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00900000143444	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00900000143444	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Mouse	MODERN SPECIES	17	Casp3 (ENSMUSG00000031628) #7	Irf2 (ENSMUSG00000031627) #8	Enpp6 (ENSMUSG00000038173) #9	Stox2 (ENSMUSG00000038143) #10	Trappc11 (ENSMUSG00000038102) #11	Rwdd4a (ENSMUSG00000031568) #12	Ing2 (ENSMUSG00000063049) #13	Cdkn2aip (ENSMUSG00000038069) #14	Cldn24 (ENSMUSG00000061974)	Wwc2 (ENSMUSG00000031563) #15	Cldn22 (ENSMUSG00000038064)	Dctd (ENSMUSG00000031562) #16	Tenm3 (ENSMUSG00000031561) #18	Aga (ENSMUSG00000031521) #20	Neil3 (ENSMUSG00000039396) #21	Vegfc (ENSMUSG00000031520) #22	Spcs3 (ENSMUSG00000054408) #23	Asb5 (ENSMUSG00000031519) #24	Spata4 (ENSMUSG00000031518) #25	Wdr17 (ENSMUSG00000039375) #26	Gpm6a (ENSMUSG00000031517) #27	Adam29 (ENSMUSG00000046258) #29	Glra3 (ENSMUSG00000038257) #30	Hpgd (ENSMUSG00000031613) #31	Cep44 (ENSMUSG00000038215) #32	Fbxo8 (ENSMUSG00000038206) #33	Hand2 (ENSMUSG00000038193) #34	Scrg1 (ENSMUSG00000031610)	Sap30 (ENSMUSG00000031609) #35	Hmgb2 (ENSMUSG00000054717) #36	Galnt7 (ENSMUSG00000031608) #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.h	ENSGT00940000161922.i.b.g	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00900000143444	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
spretus	MODERN SPECIES	17	MGP_SPRETEiJ_G0032153	Trappc11 (MGP_SPRETEiJ_G0032154) #11	Rwdd4a (MGP_SPRETEiJ_G0032155) #12	Ing2 (MGP_SPRETEiJ_G0032156) #13	MGP_SPRETEiJ_G0032157	Cdkn2aip (MGP_SPRETEiJ_G0032158) #14	MGP_SPRETEiJ_G0032159	MGP_SPRETEiJ_G0032160	Cldn22 (MGP_SPRETEiJ_G0032161)	Wwc2 (MGP_SPRETEiJ_G0032162) #15	Dctd (MGP_SPRETEiJ_G0032163) #16	Tenm3 (MGP_SPRETEiJ_G0032164) #18	MGP_SPRETEiJ_G0032165	Aga (MGP_SPRETEiJ_G0032166) #20	Neil3 (MGP_SPRETEiJ_G0032167) #21	Vegfc (MGP_SPRETEiJ_G0032168) #22	Spcs3 (MGP_SPRETEiJ_G0032169) #23	Asb5 (MGP_SPRETEiJ_G0032170) #24	Spata4 (MGP_SPRETEiJ_G0032171) #25	Wdr17 (MGP_SPRETEiJ_G0032172) #26	Gpm6a (MGP_SPRETEiJ_G0032173) #27	Adam29 (MGP_SPRETEiJ_G0032174) #29	Glra3 (MGP_SPRETEiJ_G0032175) #30	Hpgd (MGP_SPRETEiJ_G0032176) #31	Cep44 (MGP_SPRETEiJ_G0032177) #32	Fbxo8 (MGP_SPRETEiJ_G0032178) #33	Hand2 (MGP_SPRETEiJ_G0032179) #34	Scrg1 (MGP_SPRETEiJ_G0032180)	Sap30 (MGP_SPRETEiJ_G0032181) #35	MGP_SPRETEiJ_G0032182 #36	Galnt7 (MGP_SPRETEiJ_G0032183) #37
Steppe mouse	MODERN SPECIES	2928																Vegfc (ENSMSIG00000005212) #22	Spcs3 (ENSMSIG00000005192) #23	ENSMSIG00000005121 #24	Spata4 (ENSMSIG00000005087) #25	Wdr17 (ENSMSIG00000004813) #26	Gpm6a (ENSMSIG00000004750) #27
Ryukyu mouse	MODERN SPECIES	17	Stox2 (MGP_CAROLIEiJ_G0031038) #10	MGP_CAROLIEiJ_G0031039	Trappc11 (MGP_CAROLIEiJ_G0031040) #11	Rwdd4a (MGP_CAROLIEiJ_G0031041) #12	Ing2 (MGP_CAROLIEiJ_G0031042) #13	MGP_CAROLIEiJ_G0031043	Cdkn2aip (MGP_CAROLIEiJ_G0031044) #14	MGP_CAROLIEiJ_G0031045	MGP_CAROLIEiJ_G0031046	Wwc2 (MGP_CAROLIEiJ_G0031047) #15	Dctd (MGP_CAROLIEiJ_G0031048) #16	Tenm3 (MGP_CAROLIEiJ_G0031049) #18	MGP_CAROLIEiJ_G0031050	Aga (MGP_CAROLIEiJ_G0031051) #20	Neil3 (MGP_CAROLIEiJ_G0031052) #21	Vegfc (MGP_CAROLIEiJ_G0031053) #22	Spcs3 (MGP_CAROLIEiJ_G0031054) #23	Asb5 (MGP_CAROLIEiJ_G0031055) #24	Spata4 (MGP_CAROLIEiJ_G0031056) #25	Wdr17 (MGP_CAROLIEiJ_G0031057) #26	Gpm6a (MGP_CAROLIEiJ_G0031058) #27	MGP_CAROLIEiJ_G0031059 #29	Glra3 (MGP_CAROLIEiJ_G0031060) #30	Hpgd (MGP_CAROLIEiJ_G0031061) #31	Cep44 (MGP_CAROLIEiJ_G0031062) #32	Fbxo8 (MGP_CAROLIEiJ_G0031063) #33	Hand2 (MGP_CAROLIEiJ_G0031064) #34	Scrg1 (MGP_CAROLIEiJ_G0031065)	Sap30 (MGP_CAROLIEiJ_G0031066) #35	Hmgb2 (MGP_CAROLIEiJ_G0031067) #36	Galnt7 (MGP_CAROLIEiJ_G0031068) #37
Shrew mouse	MODERN SPECIES	10	Casp3 (MGP_PahariEiJ_G0021503) #7	Irf2 (MGP_PahariEiJ_G0021504) #8	Enpp6 (MGP_PahariEiJ_G0021505) #9	Stox2 (MGP_PahariEiJ_G0021506) #10	Trappc11 (MGP_PahariEiJ_G0021507) #11	Rwdd4a (MGP_PahariEiJ_G0021508) #12	Ing2 (MGP_PahariEiJ_G0021509) #13	Cdkn2aip (MGP_PahariEiJ_G0021510) #14	Cldn24 (MGP_PahariEiJ_G0021511)	MGP_PahariEiJ_G0021512	Wwc2 (MGP_PahariEiJ_G0021513) #15	Dctd (MGP_PahariEiJ_G0021514) #16	Tenm3 (MGP_PahariEiJ_G0021515) #18	Aga (MGP_PahariEiJ_G0021517) #20	Neil3 (MGP_PahariEiJ_G0021518) #21	Vegfc (MGP_PahariEiJ_G0021519) #22	Spcs3 (MGP_PahariEiJ_G0021520) #23	Asb5 (MGP_PahariEiJ_G0021521) #24	Spata4 (MGP_PahariEiJ_G0021522) #25	Wdr17 (MGP_PahariEiJ_G0021523) #26	Gpm6a (MGP_PahariEiJ_G0021524) #27	Adam29 (MGP_PahariEiJ_G0021525) #29	Glra3 (MGP_PahariEiJ_G0021526) #30	Hpgd (MGP_PahariEiJ_G0021527) #31	MGP_PahariEiJ_G0021528 #32	Fbxo8 (MGP_PahariEiJ_G0021529) #33	Hand2 (MGP_PahariEiJ_G0021530) #34	Scrg1 (MGP_PahariEiJ_G0021531)	Sap30 (MGP_PahariEiJ_G0021532) #35	Hmgb2 (MGP_PahariEiJ_G0021533) #36	Galnt7 (MGP_PahariEiJ_G0021534) #37
Rat	MODERN SPECIES	7	ENSRNOG00000064469	Ing2 (ENSRNOG00000013480) #13	Cdkn2aip (ENSRNOG00000022736) #14	Cldn24 (ENSRNOG00000031521)	Cldn22 (ENSRNOG00000030889)	Wwc2 (ENSRNOG00000013248) #15	ENSRNOG00000065368	Dctd (ENSRNOG00000013215) #16	ENSRNOG00000066202	ENSRNOG00000065184	Tenm3 (ENSRNOG00000012802) #18	ENSRNOG00000069013	Aga (ENSRNOG00000000108) #20	ENSRNOG00000064359	Neil3 (ENSRNOG00000011688) #21	Vegfc (ENSRNOG00000011416) #22	Spcs3 (ENSRNOG00000038933) #23	Asb5 (ENSRNOG00000042630) #24	Spata4 (ENSRNOG00000048035) #25	Wdr17 (ENSRNOG00000048847) #26	ENSRNOG00000070297	Gpm6a (ENSRNOG00000010731) #27	Adam21 (ENSRNOG00000059297)	ENSRNOG00000070639	AABR07024442.1 (ENSRNOG00000046720)	AABR07024439.1 (ENSRNOG00000046132)	ENSRNOG00000067321	ENSRNOG00000063491	Glra3 (ENSRNOG00000049792) #30	Hmgb1 (ENSRNOG00000058908)	Hpgd (ENSRNOG00000010610) #31
Upper Galilee mountains blind mole rat	MODERN SPECIES	1369													Tenm3 (ENSNGAG00000010258) #18	Aga (ENSNGAG00000020177) #20	ENSNGAG00000019639	Vegfc (ENSNGAG00000012309) #22	Spcs3 (ENSNGAG00000011645) #23	Asb5 (ENSNGAG00000011209) #24	Spata4 (ENSNGAG00000010645) #25	ENSNGAG00000010335	ENSNGAG00000009230 #26	ENSNGAG00000006217	Gpm6a (ENSNGAG00000000512) #27	Glra3 (ENSNGAG00000015923) #30	Hpgd (ENSNGAG00000008721) #31	ENSNGAG00000023339 #32	Fbxo8 (ENSNGAG00000022900) #33	Hand2 (ENSNGAG00000022198) #34	Scrg1 (ENSNGAG00000021892)	Sap30 (ENSNGAG00000011733) #35	ENSNGAG00000008871 #36
Lesser Egyptian jerboa	MODERN SPECIES	62	Ing2 (ENSJJAG00000022521) #13	Cdkn2aip (ENSJJAG00000000248) #14	ENSJJAG00000005210	ENSJJAG00000012983 ##15	Dctd (ENSJJAG00000016617) #16	Tenm3 (ENSJJAG00000009827) #18	ENSJJAG00000017527	ENSJJAG00000024327	ENSJJAG00000011547	ENSJJAG00000017324	Aga (ENSJJAG00000024205) #20	Neil3 (ENSJJAG00000021628) #21	ENSJJAG00000012501	ENSJJAG00000020696	ENSJJAG00000011565	Vegfc (ENSJJAG00000023820) #22	ENSJJAG00000005362 #23	Asb5 (ENSJJAG00000009349) #24	Spata4 (ENSJJAG00000000204) #25	ENSJJAG00000018815	ENSJJAG00000014807 #26	ENSJJAG00000011666	ENSJJAG00000010169	ENSJJAG00000006944	Gpm6a (ENSJJAG00000020024) #27	Glra3 (ENSJJAG00000011425) #30	Hpgd (ENSJJAG00000013898) #31	Cep44 (ENSJJAG00000023804) #32	Fbxo8 (ENSJJAG00000000446) #33	ENSJJAG00000010023	Hand2 (ENSJJAG00000015565) #34
Kangaroo rat	MODERN SPECIES	323	Primpol (ENSDORG00000002558)	Casp3 (ENSDORG00000002554) #7	Irf2 (ENSDORG00000001398) #8	Enpp6 (ENSDORG00000004165) #9	Stox2 (ENSDORG00000014878) #10	Trappc11 (ENSDORG00000014289) #11	Rwdd4a (ENSDORG00000014285) #12	Ing2 (ENSDORG00000015275) #13	Cdkn2aip (ENSDORG00000015273) #14	ENSDORG00000027703	Wwc2 (ENSDORG00000015270) #15	ENSDORG00000010593 #16	Tenm3 (ENSDORG00000007981) #18	Aga (ENSDORG00000014411) #20	ENSDORG00000002876	Vegfc (ENSDORG00000009540) #22	ENSDORG00000010006 #23	Asb5 (ENSDORG00000009298) #24	Spata4 (ENSDORG00000002778) #25	ENSDORG00000026217 #26	ENSDORG00000023707	Gpm6a (ENSDORG00000011732) #27	Glra3 (ENSDORG00000015747) #30	Hpgd (ENSDORG00000011326) #31	ENSDORG00000025276 #32	Fbxo8 (ENSDORG00000010989) #33	Hand2 (ENSDORG00000007304) #34	Scrg1 (ENSDORG00000023274)	Sap30 (ENSDORG00000025744) #35	Hmgb2 (ENSDORG00000024163) #36	ENSDORG00000026618 #37
Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00940000153232.a.b #7	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.cb	ENSGT00940000162234.bb	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Marmotini	ANCESTRAL SPECIES	30	ENSGT00940000153232.a.b.y.a #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545.u #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.f	ENSGT00940000161922.i.b.e	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Marmotini_b	ANCESTRAL SPECIES	161														ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Squirrel	MODERN SPECIES	116													ENSSTOG00000025042	AGA (ENSSTOG00000011875) #20	NEIL3 (ENSSTOG00000016245) #21	VEGFC (ENSSTOG00000002297) #22	SPCS3 (ENSSTOG00000013678) #23	ASB5 (ENSSTOG00000026375) #24	SPATA4 (ENSSTOG00000013667) #25	WDR17 (ENSSTOG00000013640) #26	GPM6A (ENSSTOG00000023117) #27	ADAM29 (ENSSTOG00000025632) #29	GLRA3 (ENSSTOG00000005897) #30	HPGD (ENSSTOG00000025253) #31	ENSSTOG00000030307	CEP44 (ENSSTOG00000012395) #32	FBXO8 (ENSSTOG00000012389) #33	HAND2 (ENSSTOG00000023020) #34	ENSSTOG00000021612	SCRG1 (ENSSTOG00000011513)	SAP30 (ENSSTOG00000027418) #35
Arctic ground squirrel	MODERN SPECIES	653															NEIL3 (ENSUPAG00010013811) #21	VEGFC (ENSUPAG00010013826) #22
Alpin marmot	MODERN SPECIES	17	ENSMMMG00000012424 #7	IRF2 (ENSMMMG00000012444) #8	ENPP6 (ENSMMMG00000012465) #9	STOX2 (ENSMMMG00000012483) #10	TRAPPC11 (ENSMMMG00000012528) #11	ENSMMMG00000012560 #12	ING2 (ENSMMMG00000012572) #13	CDKN2AIP (ENSMMMG00000012577) #14	ENSMMMG00000012586	ENSMMMG00000012589	WWC2 (ENSMMMG00000012593) #15	DCTD (ENSMMMG00000012615) #16	TENM3 (ENSMMMG00000012655) #18	AGA (ENSMMMG00000012785) #20	NEIL3 (ENSMMMG00000012802) #21	VEGFC (ENSMMMG00000012828) #22	ENSMMMG00000012853 #23	ASB5 (ENSMMMG00000012874) #24	SPATA4 (ENSMMMG00000012880) #25	WDR17 (ENSMMMG00000012914) #26	GPM6A (ENSMMMG00000013073) #27	ADAM29 (ENSMMMG00000013127) #29	ENSMMMG00000013158	GLRA3 (ENSMMMG00000013188) #30	HPGD (ENSMMMG00000014081) #31	CEP44 (ENSMMMG00000014097) #32	FBXO8 (ENSMMMG00000014117) #33	HAND2 (ENSMMMG00000014142) #34	SCRG1 (ENSMMMG00000014153)	SAP30 (ENSMMMG00000014160) #35	ENSMMMG00000014173 #36
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005003654	IRF2 (ENSSVLG00005003630) #8	ENPP6 (ENSSVLG00005003610) #9	ENSSVLG00005003590 #10	TRAPPC11 (ENSSVLG00005003499) #11	RWDD4 (ENSSVLG00005003423) #12	ING2 (ENSSVLG00005003400) #13	CDKN2AIP (ENSSVLG00005003382) #14	ENSSVLG00005003376	ENSSVLG00005003361	WWC2 (ENSSVLG00005003319) #15	DCTD (ENSSVLG00005003300) #16	TENM3 (ENSSVLG00005003236) #18	AGA (ENSSVLG00005003168) #20	NEIL3 (ENSSVLG00005003141) #21	VEGFC (ENSSVLG00005003095) #22	ENSSVLG00005003081	ENSSVLG00005003064 #23	ASB5 (ENSSVLG00005002993) #24	SPATA4 (ENSSVLG00005002939) #25	WDR17 (ENSSVLG00005002773) #26	ENSSVLG00005002719	GPM6A (ENSSVLG00005002667) #27	ENSSVLG00005002637	ENSSVLG00005002611 #29	GLRA3 (ENSSVLG00005002568) #30	ENSSVLG00005002462 #31	CEP44 (ENSSVLG00005002394) #32	ENSSVLG00005002353 #33	HAND2 (ENSSVLG00005002329) #34	SCRG1 (ENSSVLG00005002314)
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376.m #14	ENSGT00940000158376.n #14	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00390000003901	ENSGT00940000153232.a.b #7	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376.m #14	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Guinea pig	MODERN SPECIES	36	Acsl1 (ENSCPOG00000002734)	CENPU (ENSCPOG00000034557)	PRIMPOL (ENSCPOG00000002732)	ENSCPOG00000012511 #7	IRF2 (ENSCPOG00000013097) #8	ENPP6 (ENSCPOG00000002554) #9	STOX2 (ENSCPOG00000036387) #10	TRAPPC11 (ENSCPOG00000011620) #11	ING2 (ENSCPOG00000012109) #13	CDKN2AIP (ENSCPOG00000035168) #14	WWC2 (ENSCPOG00000002473) #15	DCTD (ENSCPOG00000040207) #16	TENM3 (ENSCPOG00000009475) #18	AGA (ENSCPOG00000002674) #20	NEIL3 (ENSCPOG00000003297) #21	VEGFC (ENSCPOG00000035891) #22	SPCS3 (ENSCPOG00000008544) #23	ASB5 (ENSCPOG00000013084) #24	SPATA4 (ENSCPOG00000024215) #25	WDR17 (ENSCPOG00000019958) #26	GPM6A (ENSCPOG00000030014) #27	GLRA3 (ENSCPOG00000012157) #30	Hpgd (ENSCPOG00000001979) #31	CEP44 (ENSCPOG00000013247) #32	FBXO8 (ENSCPOG00000010347) #33	HAND2 (ENSCPOG00000036252) #34	SCRG1 (ENSCPOG00000001738)	SAP30 (ENSCPOG00000001736) #35	HMGB2 (ENSCPOG00000003552) #36	GALNT7 (ENSCPOG00000031800) #37	GALNTL6 (ENSCPOG00000015730)
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00390000003901	ENSGT00940000153232.a.b #7	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376.m #14	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Long-tailed chinchilla	MODERN SPECIES	110	CENPU (ENSCLAG00000011512)	PRIMPOL (ENSCLAG00000012642)	ENSCLAG00000014245 #7	IRF2 (ENSCLAG00000015934) #8	ENPP6 (ENSCLAG00000012884) #9	STOX2 (ENSCLAG00000015001) #10	TRAPPC11 (ENSCLAG00000016148) #11	RWDD4 (ENSCLAG00000014148) #12	ING2 (ENSCLAG00000014843) #13	CDKN2AIP (ENSCLAG00000012072) #14	WWC2 (ENSCLAG00000012066) #15	DCTD (ENSCLAG00000012757) #16	TENM3 (ENSCLAG00000013736) #18	AGA (ENSCLAG00000014580) #20	NEIL3 (ENSCLAG00000015661) #21	VEGFC (ENSCLAG00000013066) #22	SPCS3 (ENSCLAG00000015410) #23	ASB5 (ENSCLAG00000011261) #24	SPATA4 (ENSCLAG00000011629) #25	WDR17 (ENSCLAG00000016000) #26	GPM6A (ENSCLAG00000017285) #27	ADAM29 (ENSCLAG00000017816) #29	GLRA3 (ENSCLAG00000014561) #30	HPGD (ENSCLAG00000015466) #31	CEP44 (ENSCLAG00000016227) #32	FBXO8 (ENSCLAG00000012922) #33	HAND2 (ENSCLAG00000014433) #34	SCRG1 (ENSCLAG00000014455)	SAP30 (ENSCLAG00000013849) #35	HMGB2 (ENSCLAG00000011532) #36	GALNT7 (ENSCLAG00000012394) #37
Degu	MODERN SPECIES	162																VEGFC (ENSODEG00000012246) #22	SPCS3 (ENSODEG00000011576) #23	ASB5 (ENSODEG00000012431) #24	SPATA4 (ENSODEG00000011174) #25	WDR17 (ENSODEG00000012341) #26	GPM6A (ENSODEG00000011825) #27	ADAM29 (ENSODEG00000011881) #29	GLRA3 (ENSODEG00000012317) #30	HPGD (ENSODEG00000011658) #31	ENSODEG00000011812 #32	FBXO8 (ENSODEG00000012698) #33	ENSODEG00000011991	HAND2 (ENSODEG00000013288) #34	SCRG1 (ENSODEG00000019896)	SAP30 (ENSODEG00000011600) #35	GALNT7 (ENSODEG00000011574) #37
Naked mole-rat female	MODERN SPECIES	25	WWC2 (ENSHGLG00000018666) #15	DCTD (ENSHGLG00000018838) #16	ENSHGLG00000003748	ENSHGLG00000006389 #18	ADH5 (ENSHGLG00000036012)	ENSHGLG00000000109	ENSHGLG00000005432	ENSHGLG00000020591	ENSHGLG00000034460	ENSHGLG00000036943	ENSHGLG00000008181 #20	ENSHGLG00000006643 #21	ENSHGLG00000020432	ENSHGLG00000021433	ENSHGLG00000040987	VEGFC (ENSHGLG00000010268) #22	ENSHGLG00000035994	SPCS3 (ENSHGLG00000007439) #23	ASB5 (ENSHGLG00000032188) #24	SPATA4 (ENSHGLG00000005881) #25	ENSHGLG00000042719	ENSHGLG00000038990	WDR17 (ENSHGLG00000013909) #26	ENSHGLG00000047046	GPM6A (ENSHGLG00000044374) #27	ENSHGLG00000038324 #29	GLRA3 (ENSHGLG00000010062) #30	HPGD (ENSHGLG00000006196) #31	CEP44 (ENSHGLG00000007002) #32	FBXO8 (ENSHGLG00000015555) #33	HAND2 (ENSHGLG00000044998) #34
Lagomorpha	ANCESTRAL SPECIES	32	ENSGT00940000158048	ENSGT00950000183039.B.b.b	ENSGT00940000156835	ENSGT00560000078585	ENSGT00940000161316	ENSGT00530000063787.A	ENSGT00940000154903	ENSGT00510000047951	ENSGT00940000159322	ENSGT00940000156396	ENSGT00530000063407.b	ENSGT00410000025556.a.a.a.a ##15	ENSGT01030000234566.e.b.a.b ##18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Rabbit	MODERN SPECIES	11	TRAPPC11 (ENSOCUG00000010179) #11	RWDD4 (ENSOCUG00000025497) #12	ING2 (ENSOCUG00000011812) #13	CDKN2AIP (ENSOCUG00000005491) #14	ENSOCUG00000033632	ENSOCUG00000034698	WWC2 (ENSOCUG00000016984) #15	DCTD (ENSOCUG00000004708) #16	TENM3 (ENSOCUG00000007616) #18	ENSOCUG00000028118 ##18	ENSOCUG00000022735	AGA (ENSOCUG00000002031) #20	ENSOCUG00000022964	NEIL3 (ENSOCUG00000001040) #21	ENSOCUG00000023661	VEGFC (ENSOCUG00000017884) #22	ENSOCUG00000012211	ENSOCUG00000029741 #23	ASB5 (ENSOCUG00000012592) #24	SPATA4 (ENSOCUG00000013569) #25	WDR17 (ENSOCUG00000015110) #26	GPM6A (ENSOCUG00000007631) #27	ENSOCUG00000037142	ENSOCUG00000007714 #29	ENSOCUG00000013889 #29	GLRA3 (ENSOCUG00000017638) #30	HPGD (ENSOCUG00000016289) #31	ENSOCUG00000026425	CEP44 (ENSOCUG00000013963) #32	FBXO8 (ENSOCUG00000008888) #33	ENSOCUG00000023773
Pika	MODERN SPECIES	2158																VEGFC (ENSOPRG00000011822) #22
Tree shrew	MODERN SPECIES	2477																ENSTBEG00000003761 #22
Laurasiatheria	ANCESTRAL SPECIES	24	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a	ENSGT00940000163552.b	ENSGT00940000161948	ENSGT00940000172974	ENSGT00950000182836.b.a.a	ENSGT00940000158430	ENSGT00390000018842
Artiodactyla	ANCESTRAL SPECIES	24	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a	ENSGT01070000253766.A.a.a.b	ENSGT00390000017014	ENSGT00400000023423	ENSGT00400000023630	ENSGT00530000064280	ENSGT00940000161432.b
Suina	ANCESTRAL SPECIES	3	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00990000204018.c	ENSGT00940000160995.b	ENSGT00990000204018.d	ENSGT00390000009472	ENSGT01090000260492	ENSGT00530000064280	ENSGT00940000161432.b	ENSGT00940000161432.a	ENSGT00940000164302	ENSGT00390000005938
Pig	MODERN SPECIES	6	ING2 (ENSSSCG00000024555) #13	CDKN2AIP (ENSSSCG00000015779) #14	ENSSSCG00000022456	CLDN22 (ENSSSCG00000027901)	ENSSSCG00000033315	WWC2 (ENSSSCG00000021731) #15	DCTD (ENSSSCG00000015775) #16	TENM3 (ENSSSCG00000015774) #18	ENSSSCG00000048815	ENSSSCG00000050308	ENSSSCG00000055184	ENSSSCG00000063491	AGA (ENSSSCG00000015772) #20	ENSSSCG00000057042	NEIL3 (ENSSSCG00000015771) #21	VEGFC (ENSSSCG00000015770) #22	SPCS3 (ENSSSCG00000015769) #23	ASB5 (ENSSSCG00000030395) #24	SPATA4 (ENSSSCG00000015767) #25	WDR17 (ENSSSCG00000015766) #26	ENSSSCG00000049422	GPM6A (ENSSSCG00000023328) #27	ENSSSCG00000058309	ENSSSCG00000036103	ENSSSCG00000057826	ENSSSCG00000040894	ENSSSCG00000053438	DEFB1 (ENSSSCG00000027555)	SPAG11 (ENSSSCG00000020934)	ENSSSCG00000032248	ENSSSCG00000039995
Chacoan peccary	MODERN SPECIES	87	IRF2 (ENSCWAG00000002803) #8	ENPP6 (ENSCWAG00000002789) #9	ENSCWAG00000002776 #10	TRAPPC11 (ENSCWAG00000002715) #11	RWDD4 (ENSCWAG00000002685) #12	ING2 (ENSCWAG00000002669) #13	CDKN2AIP (ENSCWAG00000002663) #14	ENSCWAG00000002647	ENSCWAG00000002644	ENSCWAG00000002638	WWC2 (ENSCWAG00000002574) #15	DCTD (ENSCWAG00000002557) #16	TENM3 (ENSCWAG00000002535) #18	AGA (ENSCWAG00000002514) #20	NEIL3 (ENSCWAG00000002489) #21	VEGFC (ENSCWAG00000002469) #22	SPCS3 (ENSCWAG00000002459) #23	ASB5 (ENSCWAG00000002433) #24	SPATA4 (ENSCWAG00000002376) #25	WDR17 (ENSCWAG00000002151) #26	GPM6A (ENSCWAG00000002062) #27	ENSCWAG00000002049	ENSCWAG00000002034	ENSCWAG00000002024	ENSCWAG00000002011
Artiodactyla_a	ANCESTRAL SPECIES	25	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00990000204018	ENSGT00940000167948	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163552.a	ENSGT01070000253766.A.a.a.b	ENSGT00390000017014	ENSGT00400000023423	ENSGT00400000023630	ENSGT00940000160995.a
Camelidae	ANCESTRAL SPECIES	35	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000161948	ENSGT00940000163552.b	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000164302	ENSGT00940000161432.a
Arabian camel	MODERN SPECIES	18	IRF2 (ENSCDRG00005015715) #8	ENPP6 (ENSCDRG00005015776) #9	STOX2 (ENSCDRG00005015820) #10	TRAPPC11 (ENSCDRG00005015900) #11	RWDD4 (ENSCDRG00005016171) #12	ING2 (ENSCDRG00005016228) #13	CDKN2AIP (ENSCDRG00005016254) #14	ENSCDRG00005016304	ENSCDRG00005016322	WWC2 (ENSCDRG00005016343) #15	DCTD (ENSCDRG00005016433) #16	ENSCDRG00005016533	TENM3 (ENSCDRG00005016886) #18	AGA (ENSCDRG00005021201) #20	NEIL3 (ENSCDRG00005021208) #21	VEGFC (ENSCDRG00005021212) #22	SPCS3 (ENSCDRG00005021218) #23	ASB5 (ENSCDRG00005021226) #24	SPATA4 (ENSCDRG00005021237) #25	WDR17 (ENSCDRG00005021253) #26	GPM6A (ENSCDRG00005021281) #27	ENSCDRG00005021290	ENSCDRG00005021291	ENSCDRG00005021293	ENSCDRG00005021296	ENSCDRG00005021297	ENSCDRG00005021301	ENSCDRG00005021304	ENSCDRG00005021305	ENSCDRG00005021308	ENSCDRG00005021312
Alpaca	MODERN SPECIES	1106															NEIL3 (ENSVPAG00000005020) #21	VEGFC (ENSVPAG00000005019) #22	ASB5 (ENSVPAG00000005018) #24	SPATA4 (ENSVPAG00000005016) #25	WDR17 (ENSVPAG00000005011) #26
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a.b	ENSGT00910000144208	ENSGT00940000163552.a.a.a	ENSGT01070000253766.A.a.a.b	ENSGT00940000163552.a.a.b	ENSGT00390000017014	ENSGT00400000023423
Pecora	ANCESTRAL SPECIES	31	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00940000163552.a.a.b	ENSGT00390000017014	ENSGT00400000023423.b.a	ENSGT00400000023423.b.b	ENSGT00400000023630	ENSGT00940000160995.a.i	ENSGT00940000160995.a.j	ENSGT00530000064280
Yarkand deer	MODERN SPECIES	25	CASP3 (ENSCHYG00000008657) #7	IRF2 (ENSCHYG00000024184) #8	ENPP6 (ENSCHYG00000024145) #9	STOX2 (ENSCHYG00000023957) #10	TRAPPC11 (ENSCHYG00000023408) #11	ENSCHYG00000023315 #12	ING2 (ENSCHYG00000023296) #13	CDKN2AIP (ENSCHYG00000023261) #14	WWC2 (ENSCHYG00000022971) #15	DCTD (ENSCHYG00000022883) #16	TENM3 (ENSCHYG00000022619) #18	ENSCHYG00000022559	ENSCHYG00000022545	AGA (ENSCHYG00000022427) #20	NEIL3 (ENSCHYG00000022358) #21	VEGFC (ENSCHYG00000022266) #22	ENSCHYG00000022200	SPCS3 (ENSCHYG00000022146) #23	ASB5 (ENSCHYG00000021912) #24	ENSCHYG00000021801 #25	WDR17 (ENSCHYG00000021271) #26	GPM6A (ENSCHYG00000021180) #27	ENSCHYG00000021137	ENSCHYG00000021124	ENSCHYG00000021098	ENSCHYG00000021054	ENSCHYG00000020988	ENSCHYG00000020951	ENSCHYG00000020894	ENSCHYG00000020857	ENSCHYG00000020810
Percora_a	ANCESTRAL SPECIES	31	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00940000163552.a.a.b	ENSGT00390000017014	ENSGT00400000023423.b.a.a	ENSGT00400000023423.b.b	ENSGT00400000023630	ENSGT00940000160995.a.i	ENSGT00940000160995.a.j	ENSGT00530000064280
Bovidae	ANCESTRAL SPECIES	30	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a	ENSGT00400000023423.b.b	ENSGT00400000023630	ENSGT00940000160995.a.i	ENSGT00940000160995.a.j	ENSGT00530000064280	ENSGT00940000161432.b	ENSGT00940000161432.a
Caprinae	ANCESTRAL SPECIES	31	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00390000018086.z.h.a.b.a.b.a.c.a	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00940000167948	ENSGT00940000168173	ENSGT00400000023423.b.b	ENSGT01020000231074	ENSGT01020000230640.b	ENSGT00390000009472.f	ENSGT00940000163552.b	ENSGT00390000013953	ENSGT00390000002317
Rambouillet Sheep	MODERN SPECIES	18	STOX2 (ENSOARG00020012344) #10	TRAPPC11 (ENSOARG00020011964) #11	RWDD4 (ENSOARG00020011673) #12	ENSOARG00020011629	ENSOARG00020011624	ING2 (ENSOARG00020025427) #13	CDKN2AIP (ENSOARG00020025421) #14	ENSOARG00020025415	ENSOARG00020025411	ENSOARG00020025406	WWC2 (ENSOARG00020025347) #15	DCTD (ENSOARG00020025328) #16	TENM3 (ENSOARG00020025305) #18	AGA (ENSOARG00020025240) #20	NEIL3 (ENSOARG00020025196) #21	VEGFC (ENSOARG00020025167) #22	SPCS3 (ENSOARG00020025151) #23	ASB5 (ENSOARG00020025125) #24	SPATA4 (ENSOARG00020025097) #25	WDR17 (ENSOARG00020024883) #26	GPM6A (ENSOARG00020024811) #27	ENSOARG00020024792	ENSOARG00020024782	ENSOARG00020024770	ENSOARG00020024758	ENSOARG00020024749	ENSOARG00020024737	ENSOARG00020024724	ENSOARG00020024708	ENSOARG00020024690	ENSOARG00020024675
Goat	MODERN SPECIES	19	RWDD4 (ENSCHIG00000015219) #12	ENSCHIG00000004497	ING2 (ENSCHIG00000012188) #13	CDKN2AIP (ENSCHIG00000021180) #14	ENSCHIG00000008660	ENSCHIG00000005029	WWC2 (ENSCHIG00000016217) #15	DCTD (ENSCHIG00000010700) #16	TENM3 (ENSCHIG00000011185) #18	ENSCHIG00000017110 #18	ENSCHIG00000008084	ENSCHIG00000003428	ENSCHIG00000022230	AGA (ENSCHIG00000005958) #20	NEIL3 (ENSCHIG00000009157) #21	VEGFC (ENSCHIG00000024070) #22	SPCS3 (ENSCHIG00000018924) #23	ASB5 (ENSCHIG00000014279) #24	SPATA4 (ENSCHIG00000020672) #25	WDR17 (ENSCHIG00000024100) #26	GPM6A (ENSCHIG00000014802) #27	ENSCHIG00000016730	ENSCHIG00000021593	ENSCHIG00000009641	ENSCHIG00000015837	ENSCHIG00000010619	ENSCHIG00000005931	ENSCHIG00000014536	ENSCHIG00000022241	ENSCHIG00000010790	ENSCHIG00000021111
Bovinae	ANCESTRAL SPECIES	36	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000161381.f.b	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a.b	ENSGT00400000023423.b.b	ENSGT00400000023423.a.b.b	ENSGT00400000023630.b	ENSGT00940000160995.a.i.a	ENSGT00940000167657
Bos	ANCESTRAL SPECIES	33	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000161381.f.b	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a.b	ENSGT00400000023423.a.b.b	ENSGT00400000023630.b	ENSGT00940000160995.a.i.a	ENSGT00940000167657	ENSGT00980000198743.A.b.b	ENSGT00940000160995.b	ENSGT01020000230640.b
Bos_b	ANCESTRAL SPECIES	35	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00390000009472.e	ENSGT00390000017014.d.a.b	ENSGT00940000160995.a.i.b.b	ENSGT00400000023423.a.b.b	ENSGT00400000023630.b	ENSGT00940000160995.a.i.a	ENSGT00940000167657	ENSGT00980000198743.A.b.b	ENSGT00940000160995.b
Cow	MODERN SPECIES	19	ENPP6 (ENSBTAG00000011573) #9	STOX2 (ENSBTAG00000008886) #10	TRAPPC11 (ENSBTAG00000007422) #11	RWDD4 (ENSBTAG00000003081) #12	ING2 (ENSBTAG00000047706) #13	CDKN2AIP (ENSBTAG00000000957) #14	ENSBTAG00000051927	ENSBTAG00000052405	WWC2 (ENSBTAG00000012191) #15	DCTD (ENSBTAG00000020282) #16	TENM3 (ENSBTAG00000021133) #18	ENSBTAG00000047749 #18	AGA (ENSBTAG00000017085) #20	NEIL3 (ENSBTAG00000005825) #21	ENSBTAG00000054577	VEGFC (ENSBTAG00000014737) #22	SPCS3 (ENSBTAG00000014146) #23	ASB5 (ENSBTAG00000014143) #24	SPATA4 (ENSBTAG00000014141) #25	WDR17 (ENSBTAG00000014135) #26	GPM6A (ENSBTAG00000004231) #27	ENSBTAG00000055303	ENSBTAG00000054169	ENSBTAG00000053057	EBD (ENSBTAG00000033545)	DEFB4A (ENSBTAG00000053557)	ENSBTAG00000051016	ENSBTAG00000049265	ENSBTAG00000051241	DEFB (ENSBTAG00000045649)	ENSBTAG00000049891
Hybrid Bos Indicus	MODERN SPECIES	19	STOX2 (ENSBIXG00005015678) #10	TRAPPC11 (ENSBIXG00005015785) #11	RWDD4 (ENSBIXG00005015843) #12	ING2 (ENSBIXG00005015847) #13	CDKN2AIP (ENSBIXG00005015874) #14	ENSBIXG00005015879	ENSBIXG00005015891	ENSBIXG00005015897	ENSBIXG00005015900	WWC2 (ENSBIXG00005015995) #15	ENSBIXG00005016038 #16	ENSBIXG00005016044	TENM3 (ENSBIXG00005016109) #18	AGA (ENSBIXG00005016212) #20	NEIL3 (ENSBIXG00005016309) #21	VEGFC (ENSBIXG00005016345) #22	SPCS3 (ENSBIXG00005016392) #23	ASB5 (ENSBIXG00005016430) #24	SPATA4 (ENSBIXG00005016480) #25	WDR17 (ENSBIXG00005016760) #26	ENSBIXG00005016840	GPM6A (ENSBIXG00005016935) #27	ENSBIXG00005016978	ENSBIXG00005002752	ENSBIXG00005007793	ENSBIXG00005017017	ENSBIXG00005006581	ENSBIXG00005017046	ENSBIXG00005007794	ENSBIXG00005006020	ENSBIXG00005017075
Bos_a	ANCESTRAL SPECIES	31	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000161381.f.b	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01020000230640.a	ENSGT00390000009472.e
Domestic yak	MODERN SPECIES	20	ENSBGRG00000020927 #10	TRAPPC11 (ENSBGRG00000020963) #11	RWDD4 (ENSBGRG00000007035) #12	ING2 (ENSBGRG00000007303) #13	ENSBGRG00000007321 #14	ENSBGRG00000007343 #14	ENSBGRG00000007420	WWC2 (ENSBGRG00000007531) #15	DCTD (ENSBGRG00000007650) #16	TENM3 (ENSBGRG00000007837) #18	ENSBGRG00000008180	ENSBGRG00000008196	AGA (ENSBGRG00000008287) #20	NEIL3 (ENSBGRG00000008579) #21	ENSBGRG00000008875	VEGFC (ENSBGRG00000008928) #22	SPCS3 (ENSBGRG00000008980) #23	ASB5 (ENSBGRG00000009021) #24	WDR17 (ENSBGRG00000009246) #26	SPATA4 (ENSBGRG00000010033) #25	GPM6A (ENSBGRG00000010237) #27	ENSBGRG00000010615	ENSBGRG00000010636	ENSBGRG00000010697
Wild yak	MODERN SPECIES	2671																VEGFC (ENSBMUG00000022416) #22	SPCS3 (ENSBMUG00000022391) #23	ASB5 (ENSBMUG00000022364) #24	SPATA4 (ENSBMUG00000022336) #25
American bison	MODERN SPECIES	3361												ENSBBBG00000017049	AGA (ENSBBBG00000017079) #20	NEIL3 (ENSBBBG00000017097) #21	ENSBBBG00000017108	VEGFC (ENSBBBG00000004233) #22	SPCS3 (ENSBBBG00000017155) #23	ASB5 (ENSBBBG00000007002) #24	SPATA4 (ENSBBBG00000017206) #25	WDR17 (ENSBBBG00000017383) #26	GPM6A (ENSBBBG00000017419) #27	ENSBBBG00000017428	ENSBBBG00000017432	ENSBBBG00000017440	ENSBBBG00000017445	ENSBBBG00000017454
Siberian musk deer	MODERN SPECIES	234											ENSMMSG00000002215	ENSMMSG00000002203	AGA (ENSMMSG00000002188) #20	NEIL3 (ENSMMSG00000002161) #21	ENSMMSG00000002143	VEGFC (ENSMMSG00000002136) #22	SPCS3 (ENSMMSG00000002116) #23	ASB5 (ENSMMSG00000002081) #24	SPATA4 (ENSMMSG00000002021) #25	WDR17 (ENSMMSG00000001836) #26
Cetacea	ANCESTRAL SPECIES	22											ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a.a.b	ENSGT00390000017014	ENSGT00400000023423	ENSGT00950000185080	ENSGT00530000064280	ENSGT00940000161432.a	ENSGT00940000164302
Odontoceti	ANCESTRAL SPECIES	23											ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.a.a.b	ENSGT00390000017014	ENSGT00400000023423	ENSGT00530000064280	ENSGT00940000161432.b	ENSGT00940000163552.b	ENSGT00940000154559.B
Odontoceti_a	ANCESTRAL SPECIES	25											ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163626	ENSGT00390000017014	ENSGT00400000023630	ENSGT00940000167657	ENSGT00950000185080	ENSGT00530000064280	ENSGT00940000161432.b	ENSGT00940000163552.b
Odontoceti_b	ANCESTRAL SPECIES	23											ENSGT00940000153676.a.j #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163626	ENSGT00390000017014	ENSGT00400000023630	ENSGT00940000167657	ENSGT00950000185080	ENSGT00530000064280	ENSGT00940000161432.b	ENSGT00940000163552.b
Monodontidae	ANCESTRAL SPECIES	24											ENSGT00940000153676.a.j #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00390000009472	ENSGT00940000163626	ENSGT00390000017014	ENSGT00400000023630	ENSGT00940000167657	ENSGT00530000064280	ENSGT00940000163552.b	ENSGT00940000154559.B	ENSGT00950000182841.b.a.a.b.a.a.b.a.a.a.b.a.a.b.a
Beluga whale	MODERN SPECIES	30										DCTD (ENSDLEG00000007562) #16	TENM3 (ENSDLEG00000007724) #18	ENSDLEG00000011880	ENSDLEG00000011888 #18	AGA (ENSDLEG00000011914) #20	NEIL3 (ENSDLEG00000011934) #21	VEGFC (ENSDLEG00000011972) #22	SPCS3 (ENSDLEG00000011990) #23	ASB5 (ENSDLEG00000012000) #24	SPATA4 (ENSDLEG00000012022) #25	WDR17 (ENSDLEG00000012102) #26	GPM6A (ENSDLEG00000012490) #27	ENSDLEG00000012505	DEFB1 (ENSDLEG00000012527)	ENSDLEG00000012534	ENSDLEG00000012537	ENSDLEG00000012544	ENSDLEG00000012549	XKR5 (ENSDLEG00000012556)	AGPAT5 (ENSDLEG00000012572)	MCPH1 (ENSDLEG00000012599)	ANGPT2 (ENSDLEG00000004149)
Narwhal	MODERN SPECIES	303											ENSMMNG00015006264 #16	ENSMMNG00015006238	TENM3 (ENSMMNG00015006198) #18	AGA (ENSMMNG00015006156) #20	NEIL3 (ENSMMNG00015006138) #21	VEGFC (ENSMMNG00015006117) #22	SPCS3 (ENSMMNG00015006095) #23	ASB5 (ENSMMNG00015006061) #24	SPATA4 (ENSMMNG00015005959) #25	WDR17 (ENSMMNG00015005853) #26	GPM6A (ENSMMNG00015005770) #27	ENSMMNG00015005732	ENSMMNG00015005710	ENSMMNG00015005689	DEFB1 (ENSMMNG00015005667)	ENSMMNG00015005654	ENSMMNG00015005639	ENSMMNG00015005624	ENSMMNG00015005611	XKR5 (ENSMMNG00015005589)	AGPAT5 (ENSMMNG00015005566)
Vaquita	MODERN SPECIES	13												ENSPSNG00000011977 #16	TENM3 (ENSPSNG00000012019) #18	AGA (ENSPSNG00000012318) #20	NEIL3 (ENSPSNG00000012369) #21	VEGFC (ENSPSNG00000012411) #22	SPCS3 (ENSPSNG00000012470) #23	ASB5 (ENSPSNG00000012545) #24	SPATA4 (ENSPSNG00000012798) #25	WDR17 (ENSPSNG00000012956) #26	GPM6A (ENSPSNG00000013103) #27	ENSPSNG00000013292	ENSPSNG00000013332	DEFB1 (ENSPSNG00000013427)	ENSPSNG00000013468	ENSPSNG00000013511	ENSPSNG00000013568	ENSPSNG00000013627	ENSPSNG00000013657	ENSPSNG00000013719	ENSPSNG00000013784
Dolphin	MODERN SPECIES	1031																VEGFC (ENSTTRG00000005022) #22
Sperm whale	MODERN SPECIES	12											DCTD (ENSPCTG00005004729) #16	TENM3 (ENSPCTG00005004648) #18	ENSPCTG00005004613	AGA (ENSPCTG00005004580) #20	NEIL3 (ENSPCTG00005004557) #21	VEGFC (ENSPCTG00005004531) #22	SPCS3 (ENSPCTG00005004511) #23	ASB5 (ENSPCTG00005014421) #24	SPATA4 (ENSPCTG00005014252) #25	WDR17 (ENSPCTG00005014163) #26	GPM6A (ENSPCTG00005013933) #27	ENSPCTG00005013877	ENSPCTG00005013825	ENSPCTG00005013766	ENSPCTG00005013670	DEFB1 (ENSPCTG00005013626)	ENSPCTG00005013581	ENSPCTG00005013524	ENSPCTG00005013479	ENSPCTG00005013452	ENSPCTG00005013405
Blue whale	MODERN SPECIES	13												ENSBMSG00010020142 #16	TENM3 (ENSBMSG00010020172) #18	AGA (ENSBMSG00010020237) #20	NEIL3 (ENSBMSG00010020256) #21	VEGFC (ENSBMSG00010020287) #22	SPCS3 (ENSBMSG00010020305) #23	ASB5 (ENSBMSG00010020420) #24	SPATA4 (ENSBMSG00010020504) #25	WDR17 (ENSBMSG00010020568) #26	GPM6A (ENSBMSG00010020866) #27	ENSBMSG00010020916	ENSBMSG00010020924	ENSBMSG00010020932	ENSBMSG00010020939	DEFB1 (ENSBMSG00010020953)	ENSBMSG00010020960	ENSBMSG00010020972	ENSBMSG00010020980	ENSBMSG00010015423	ENSBMSG00010015455
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948	ENSGT00940000168770	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000165413	ENSGT00940000161432.a
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000154559.B	ENSGT00940000163626	ENSGT00940000162665	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938
Caniformia	ANCESTRAL SPECIES	28	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00940000171084	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000163626	ENSGT00940000168770	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000165413	ENSGT00940000161432.a
Caniformia_b	ANCESTRAL SPECIES	30	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00940000171084	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223.b #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948	ENSGT00940000162665	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000165413
Ursidae	ANCESTRAL SPECIES	38	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00950000183164.E.c.b.a	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00390000011010.b.h.a.b	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223.b #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b
Ursus	ANCESTRAL SPECIES	230														ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223.b #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000154559.A	ENSGT00940000167948	ENSGT00940000163552.b
Polar bear	MODERN SPECIES	326														AGA (ENSUMAG00000023402) #20	NEIL3 (ENSUMAG00000023401) #21	VEGFC (ENSUMAG00000023387) #22	SPCS3 (ENSUMAG00000023380) #23	ASB5 (ENSUMAG00000023378) #24	SPATA4 (ENSUMAG00000023376) #25	WDR17 (ENSUMAG00000023369) #26	GPM6A (ENSUMAG00000023367) #27	ENSUMAG00000023366	ENSUMAG00000023365	ENSUMAG00000023364	ENSUMAG00000023362	ENSUMAG00000023361	ENSUMAG00000023360	ENSUMAG00000023359	ENSUMAG00000023358	OR14J1 (ENSUMAG00000023357)	OR12D3 (ENSUMAG00000023356)
American black bear	MODERN SPECIES	7583																VEGFC (ENSUAMG00000011530) #22
Giant Panda	MODERN SPECIES	9	TRAPPC11 (ENSAMEG00000008280) #11	RWDD4 (ENSAMEG00000008268) #12	ING2 (ENSAMEG00000008264) #13	ENSAMEG00000008262	CDKN2AIP (ENSAMEG00000008216) #14	ENSAMEG00000031514	ENSAMEG00000019395	WWC2 (ENSAMEG00000008133) #15	ENSAMEG00000019360	DCTD (ENSAMEG00000028421) #16	ENSAMEG00000007878	TENM3 (ENSAMEG00000007908) #18	ENSAMEG00000030313	AGA (ENSAMEG00000003696) #20	NEIL3 (ENSAMEG00000003715) #21	VEGFC (ENSAMEG00000017130) #22	SPCS3 (ENSAMEG00000006235) #23	ASB5 (ENSAMEG00000008769) #24	SPATA4 (ENSAMEG00000008788) #25	ENSAMEG00000008799 #26	ENSAMEG00000028936 #27	ENSAMEG00000008077	ENSAMEG00000008076	ENSAMEG00000018588	ENSAMEG00000026340	ENSAMEG00000028124	ENSAMEG00000019716	ENSAMEG00000019701	ENSAMEG00000018845	ENSAMEG00000018848	ENSAMEG00000018917
Mustelinae	ANCESTRAL SPECIES	122														ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223.b #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000165413	ENSGT00940000161432.a
American mink	MODERN SPECIES	155													AGA (ENSNVIG00000009317) #20	ENSNVIG00000009309	NEIL3 (ENSNVIG00000009302) #21	VEGFC (ENSNVIG00000009288) #22	SPCS3 (ENSNVIG00000009274) #23	ASB5 (ENSNVIG00000009254) #24	SPATA4 (ENSNVIG00000009244) #25	WDR17 (ENSNVIG00000009138) #26	GPM6A (ENSNVIG00000009121) #27	ENSNVIG00000009108	ENSNVIG00000009089	ENSNVIG00000009073	ENSNVIG00000009054	ENSNVIG00000009022	ENSNVIG00000009007	ENSNVIG00000008983	ENSNVIG00000008975	ENSNVIG00000008969	ENSNVIG00000008951
Ferret	MODERN SPECIES	378													AGA (ENSMPUG00000012147) #20	NEIL3 (ENSMPUG00000012143) #21	ENSMPUG00000012133	VEGFC (ENSMPUG00000012093) #22	ASB5 (ENSMPUG00000012088) #24	SPATA4 (ENSMPUG00000012057) #25	WDR17 (ENSMPUG00000012048) #26	GPM6A (ENSMPUG00000012044) #27	ENSMPUG00000012041	ENSMPUG00000012036	ENSMPUG00000012027
Canidae	ANCESTRAL SPECIES	53	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00940000171084	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00530000065303.l	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000154559.A	ENSGT00940000167948	ENSGT00940000163552.b	ENSGT00940000154559.B	ENSGT00940000162665.l	ENSGT00390000013953	ENSGT00390000002317
Canis_lupus	ANCESTRAL SPECIES	29	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545.o #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00940000171084	ENSGT01030000234566.e.b.a.a #18	ENSGT00530000065303.l	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000154559.A	ENSGT00940000167948	ENSGT00940000163552.b	ENSGT00940000163626	ENSGT00940000162665.l.b.b	ENSGT00940000162665.l.a	ENSGT00390000013953
Dog	MODERN SPECIES	7	STOX2 (ENSCAFG00845015568) #10	TRAPPC11 (ENSCAFG00845015913) #11	RWDD4 (ENSCAFG00845016321) #12	ING2 (ENSCAFG00845016404) #13	CDKN2AIP (ENSCAFG00845016463) #14	CLDN24 (ENSCAFG00845016547)	ENSCAFG00845016592	WWC2 (ENSCAFG00845016816) #15	DCTD (ENSCAFG00845017237) #16	ENSCAFG00845017499	TENM3 (ENSCAFG00845017689) #18	ENSCAFG00845018229	ENSCAFG00845018256	AGA (ENSCAFG00845018294) #20	NEIL3 (ENSCAFG00845018393) #21	VEGFC (ENSCAFG00845018800) #22	SPCS3 (ENSCAFG00845018970) #23	ASB5 (ENSCAFG00845019124) #24	SPATA4 (ENSCAFG00845019396) #25	WDR17 (ENSCAFG00845019561) #26	GPM6A (ENSCAFG00845020725) #27	ENSCAFG00845020859	ENSCAFG00845020898	ENSCAFG00845020938	ENSCAFG00845020984	ENSCAFG00845021033	ENSCAFG00845021085	ENSCAFG00845021125	ENSCAFG00845021161	ENSCAFG00845021200	CBD107 (ENSCAFG00845021232)
Dingo	MODERN SPECIES	250												ENSCAFG00020022447	ENSCAFG00020022448	AGA (ENSCAFG00020022450) #20	NEIL3 (ENSCAFG00020022451) #21	VEGFC (ENSCAFG00020022454) #22	SPCS3 (ENSCAFG00020022455) #23	ASB5 (ENSCAFG00020022456) #24	SPATA4 (ENSCAFG00020022457) #25	WDR17 (ENSCAFG00020022458) #26	ENSCAFG00020022492	GPM6A (ENSCAFG00020022495) #27	ENSCAFG00020022496	ENSCAFG00020022497	ENSCAFG00020022498	ENSCAFG00020022501	ENSCAFG00020022502	ENSCAFG00020022503	ENSCAFG00020022504	ENSCAFG00020022505	ENSCAFG00020022506
Red fox	MODERN SPECIES	117			DCTD (ENSVVUG00000012337) #16	ENSVVUG00000012354	ENSVVUG00000012365	TENM3 (ENSVVUG00000012380) #18	ENSVVUG00000012448 ##18	ENSVVUG00000012484	ENSVVUG00000012490	ENSVVUG00000012522	ENSVVUG00000012528	ENSVVUG00000012562	AGA (ENSVVUG00000012575) #20	ENSVVUG00000012591	NEIL3 (ENSVVUG00000012598) #21	VEGFC (ENSVVUG00000012617) #22	SPCS3 (ENSVVUG00000012635) #23	ASB5 (ENSVVUG00000012644) #24	SPATA4 (ENSVVUG00000012649) #25	WDR17 (ENSVVUG00000012663) #26	ENSVVUG00000012738	GPM6A (ENSVVUG00000012753) #27	ENSVVUG00000012761	ENSVVUG00000012764	ENSVVUG00000012766	ENSVVUG00000012769	ENSVVUG00000012777
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545.m #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.i	ENSGT00940000162234.j	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000154559.B	ENSGT00940000163626	ENSGT00940000162665.m.a	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545.m #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.i	ENSGT00940000162234.j	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000163626	ENSGT00940000162665.m.a	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000165413
Tiger	MODERN SPECIES	138				RWDD4 (ENSPTIG00000012549) #12	ING2 (ENSPTIG00000012657) #13	CDKN2AIP (ENSPTIG00000012665) #14	ENSPTIG00000008813	ENSPTIG00000012751 #15	ENSPTIG00000012771 #15	DCTD (ENSPTIG00000012783) #16	ENSPTIG00000008817	TENM3 (ENSPTIG00000012814) #18	ENSPTIG00000012914	AGA (ENSPTIG00000012922) #20	NEIL3 (ENSPTIG00000012966) #21	VEGFC (ENSPTIG00000013004) #22	SPCS3 (ENSPTIG00000013015) #23	ASB5 (ENSPTIG00000013049) #24	SPATA4 (ENSPTIG00000013173) #25	WDR17 (ENSPTIG00000013197) #26	GPM6A (ENSPTIG00000013275) #27	ENSPTIG00000013309	ENSPTIG00000008822	ENSPTIG00000013317	ENSPTIG00000013323
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545.m #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.i	ENSGT00940000162234.j	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000163626	ENSGT00940000162665.m.a	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000165413
leopard	MODERN SPECIES	163														AGA (ENSPPRG00000003967) #20	NEIL3 (ENSPPRG00000003958) #21	VEGFC (ENSPPRG00000003927) #22	SPCS3 (ENSPPRG00000003912) #23	ASB5 (ENSPPRG00000003863) #24	SPATA4 (ENSPPRG00000003853) #25	WDR17 (ENSPPRG00000003775) #26	GPM6A (ENSPPRG00000003463) #27	ENSPPRG00000003348	ENSPPRG00000011023	ENSPPRG00000003331	ENSPPRG00000003316
lion	MODERN SPECIES	4	IRF2 (ENSPLOG00000014506) #8	ENPP6 (ENSPLOG00000014451) #9	STOX2 (ENSPLOG00000014268) #10	TRAPPC11 (ENSPLOG00000014085) #11	RWDD4 (ENSPLOG00000013987) #12	ING2 (ENSPLOG00000013944) #13	CDKN2AIP (ENSPLOG00000013842) #14	ENSPLOG00000013818	WWC2 (ENSPLOG00000013387) #15	DCTD (ENSPLOG00000013305) #16	TENM3 (ENSPLOG00000013094) #18	ENSPLOG00000013048	ENSPLOG00000013024	AGA (ENSPLOG00000012952) #20	NEIL3 (ENSPLOG00000012822) #21	VEGFC (ENSPLOG00000012772) #22	SPCS3 (ENSPLOG00000012719) #23	ASB5 (ENSPLOG00000012496) #24	SPATA4 (ENSPLOG00000012353) #25	WDR17 (ENSPLOG00000011624) #26	GPM6A (ENSPLOG00000011461) #27	ENSPLOG00000011418	ENSPLOG00000011392	ENSPLOG00000011358	ENSPLOG00000011312	ENSPLOG00000011257	ENSPLOG00000011225	ENSPLOG00000011179	ENSPLOG00000011150	ENSPLOG00000011128	ENSPLOG00000011077
Cat	MODERN SPECIES	235	IRF2 (ENSFCAG00000030144) #8	ENPP6 (ENSFCAG00000001574) #9	STOX2 (ENSFCAG00000014995) #10	TRAPPC11 (ENSFCAG00000030217) #11	RWDD4 (ENSFCAG00000024337) #12	ING2 (ENSFCAG00000028949) #13	CDKN2AIP (ENSFCAG00000026739) #14	ENSFCAG00000042436	ENSFCAG00000042875	WWC2 (ENSFCAG00000003067) #15	DCTD (ENSFCAG00000044388) #16	TENM3 (ENSFCAG00000022648) #18	ENSFCAG00000042450	AGA (ENSFCAG00000022643) #20	NEIL3 (ENSFCAG00000004956) #21	VEGFC (ENSFCAG00000007996) #22	ENSFCAG00000050236	SPCS3 (ENSFCAG00000044774) #23	ASB5 (ENSFCAG00000002494) #24	SPATA4 (ENSFCAG00000022048) #25	WDR17 (ENSFCAG00000002493) #26	GPM6A (ENSFCAG00000030755) #27	ENSFCAG00000037843	ENSFCAG00000037534	ENSFCAG00000040610	ENSFCAG00000036103	ENSFCAG00000047469	ENSFCAG00000046328	ENSFCAG00000046076	ENSFCAG00000047204	ENSFCAG00000039131
Laurasiatheria_c	ANCESTRAL SPECIES	26	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948	ENSGT00940000162665	ENSGT00390000013953	ENSGT00390000002317	ENSGT00390000005938	ENSGT00940000165413
Equus	ANCESTRAL SPECIES	28	ENSGT00940000169716	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00910000144208	ENSGT00940000163552.a	ENSGT00940000162665	ENSGT00390000013953	ENSGT00390000002317	ENSGT00940000165413.c
Donkey	MODERN SPECIES	19	IRF2 (ENSEASG00005018423) #8	ENSEASG00005025603	ENPP6 (ENSEASG00005018425) #9	STOX2 (ENSEASG00005018429) #10	TRAPPC11 (ENSEASG00005018432) #11	RWDD4 (ENSEASG00005018438) #12	ING2 (ENSEASG00005034685) #13	CDKN2AIP (ENSEASG00005018444) #14	ENSEASG00005035036	WWC2 (ENSEASG00005018450) #15	ENSEASG00005024583 #16	TENM3 (ENSEASG00005018486) #18	ENSEASG00005018558 ##18	AGA (ENSEASG00005022270) #20	NEIL3 (ENSEASG00005022272) #21	VEGFC (ENSEASG00005022274) #22	SPCS3 (ENSEASG00005022278) #23	ASB5 (ENSEASG00005022280) #24	SPATA4 (ENSEASG00005022285) #25	ENSEASG00005022293 #26	ENSEASG00005022306 #27	ENSEASG00005022307	ENSEASG00005022312	ENSEASG00005022310	ENSEASG00005023861	ENSEASG00005023643	ENSEASG00005022320	ENSEASG00005037468	ENSEASG00005022324	ENSEASG00005032533	ENSEASG00005022364
Horse	MODERN SPECIES	19	STOX2 (ENSECAG00000012786) #10	ENSECAG00000036009	TRAPPC11 (ENSECAG00000015348) #11	RWDD4 (ENSECAG00000011336) #12	ING2 (ENSECAG00000015406) #13	CDKN2AIP (ENSECAG00000015905) #14	ENSECAG00000017161	ENSECAG00000006075	WWC2 (ENSECAG00000017226) #15	DCTD (ENSECAG00000017516) #16	TENM3 (ENSECAG00000020433) #18	ENSECAG00000051167 #18	AGA (ENSECAG00000000085) #20	NEIL3 (ENSECAG00000009121) #21	ENSECAG00000054402	VEGFC (ENSECAG00000012133) #22	SPCS3 (ENSECAG00000016480) #23	ASB5 (ENSECAG00000016644) #24	SPATA4 (ENSECAG00000000143) #25	WDR17 (ENSECAG00000006722) #26	GPM6A (ENSECAG00000016756) #27	ENSECAG00000037282	ENSECAG00000033476	ENSECAG00000033712	ENSECAG00000022947	ENSECAG00000035386	ENSECAG00000034859	ENSECAG00000037259	ENSECAG00000045150	ENSECAG00000033574	ENSECAG00000028090
Chiroptera	ANCESTRAL SPECIES	32	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00940000167948	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948	ENSGT00940000154559.C	ENSGT00390000004915.b	ENSGT00390000017888	ENSGT00390000005606
Megabat	MODERN SPECIES	7931																VEGFC (ENSPVAG00000005896) #22
Microchiroptera	ANCESTRAL SPECIES	33	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000160995.b	ENSGT00990000204018	ENSGT00940000167948	ENSGT00390000009472	ENSGT00940000163552.b	ENSGT00940000161948	ENSGT00940000154559.C	ENSGT00390000004915.b	ENSGT00390000017888	ENSGT00390000005606
Greater horseshoe bat	MODERN SPECIES	22	STOX2 (ENSRFEG00010016438) #10	TRAPPC11 (ENSRFEG00010016462) #11	RWDD4 (ENSRFEG00010016789) #12	ING2 (ENSRFEG00010016836) #13	CDKN2AIP (ENSRFEG00010016870) #14	ENSRFEG00010016958	ENSRFEG00010016974	WWC2 (ENSRFEG00010016991) #15	ENSRFEG00010017067	DCTD (ENSRFEG00010017093) #16	ENSRFEG00010017163	TENM3 (ENSRFEG00010017187) #18	ENSRFEG00010017266	AGA (ENSRFEG00010017284) #20	NEIL3 (ENSRFEG00010017333) #21	VEGFC (ENSRFEG00010017460) #22	SPCS3 (ENSRFEG00010017637) #23	ASB5 (ENSRFEG00010017669) #24	SPATA4 (ENSRFEG00010017719) #25	WDR17 (ENSRFEG00010017869) #26	GPM6A (ENSRFEG00010018017) #27	ENSRFEG00010018092	ENSRFEG00010018122	ENSRFEG00010018148	ENSRFEG00010018180	ENSRFEG00010018188	ENSRFEG00010018196	FOXO1 (ENSRFEG00010018224)	MRPS31 (ENSRFEG00010018274)	SLC25A15 (ENSRFEG00010018343)	ENSRFEG00010018372
Microbat	MODERN SPECIES	1246														AGA (ENSMLUG00000004667) #20	NEIL3 (ENSMLUG00000007545) #21	VEGFC (ENSMLUG00000015019) #22	SPCS3 (ENSMLUG00000029965) #23	ASB5 (ENSMLUG00000008409) #24	SPATA4 (ENSMLUG00000007397) #25	WDR17 (ENSMLUG00000007353) #26
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156167.b #22
Hedgehog	MODERN SPECIES	4604																VEGFC (ENSEEUG00000015726) #22
Common shrew	MODERN SPECIES	3552																VEGFC (ENSSARG00000013563) #22
Atlantogenata	ANCESTRAL SPECIES	84	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Xenarthra	ANCESTRAL SPECIES	967																ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26
Sloth	MODERN SPECIES	4068																VEGFC (ENSCHOG00000003161) #22
Armadillo	MODERN SPECIES	2191																VEGFC (ENSDNOG00000042443) #22	SPCS3 (ENSDNOG00000013881) #23	ASB5 (ENSDNOG00000037662) #24	SPATA4 (ENSDNOG00000016276) #25	WDR17 (ENSDNOG00000010871) #26
Afrotheria	ANCESTRAL SPECIES	92	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Afrotheria_a	ANCESTRAL SPECIES	95	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000163394 #29	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Elephant	MODERN SPECIES	355	IRF2 (ENSLAFG00000000088) #8	ENPP6 (ENSLAFG00000012099) #9	STOX2 (ENSLAFG00000012095) #10	TRAPPC11 (ENSLAFG00000003032) #11	ENSLAFG00000003031 #12	ING2 (ENSLAFG00000014542) #13	CDKN2AIP (ENSLAFG00000009239) #14	ENSLAFG00000007256	ENSLAFG00000007255	WWC2 (ENSLAFG00000007253) #15	DCTD (ENSLAFG00000018439) #16	ENSLAFG00000015906 #18	ENSLAFG00000029165 #18	AGA (ENSLAFG00000005742) #20	NEIL3 (ENSLAFG00000014165) #21	VEGFC (ENSLAFG00000009460) #22	SPCS3 (ENSLAFG00000010193) #23	ASB5 (ENSLAFG00000014665) #24	SPATA4 (ENSLAFG00000016180) #25	WDR17 (ENSLAFG00000014654) #26	GPM6A (ENSLAFG00000009135) #27	ENSLAFG00000030784	ADAM29 (ENSLAFG00000026574) #29	GLRA3 (ENSLAFG00000009978) #30	HPGD (ENSLAFG00000001508) #31	CEP44 (ENSLAFG00000016042) #32	FBXO8 (ENSLAFG00000022683) #33	HAND2 (ENSLAFG00000029843) #34	SCRG1 (ENSLAFG00000002775)	SAP30 (ENSLAFG00000002772) #35	ENSLAFG00000010417 #36
Hyrax	MODERN SPECIES	3724																VEGFC (ENSPCAG00000007926) #22
Tenrec	MODERN SPECIES	4452																VEGFC (ENSETEG00000015707) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000014316.c.b.`b	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.a	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000168298.a
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000014316.c.b.`b	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.a	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000168298.a
Diprotodontia	ANCESTRAL SPECIES	43	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000014316.c.b.`b	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.a	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000168298.a	ENSGT00940000155038
Diprotodontia_a	ANCESTRAL SPECIES	38	ENSGT00940000153232.a.b.f #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000014316.c.b.`b	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234.a	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000168298.a	ENSGT00440000038032.ib
koala	MODERN SPECIES	68												ENSPCIG00000031471	ENSPCIG00000024587	AGA (ENSPCIG00000024588) #20	NEIL3 (ENSPCIG00000024590) #21	VEGFC (ENSPCIG00000006671) #22	SPCS3 (ENSPCIG00000024289) #23	ASB5 (ENSPCIG00000024288) #24	SPATA4 (ENSPCIG00000024287) #25	WDR17 (ENSPCIG00000011114) #26	ENSPCIG00000024285	GPM6A (ENSPCIG00000014016) #27	ENSPCIG00000010644	ENSPCIG00000005116	ENSPCIG00000014057	GLRA3 (ENSPCIG00000030265) #30	HPGD (ENSPCIG00000009562) #31	CEP44 (ENSPCIG00000022019) #32	FBXO8 (ENSPCIG00000022026) #33	HAND2 (ENSPCIG00000007105) #34	SCRG1 (ENSPCIG00000008569)
Common wonbat	MODERN SPECIES	1057	TRAPPC11 (ENSVURG00010006961) #11	RWDD4 (ENSVURG00010006994) #12	ENSVURG00010007020 #13	CDKN2AIP (ENSVURG00010007029) #14	WWC2 (ENSVURG00010007055) #15	ENSVURG00010007081	ENSVURG00010007086	ENSVURG00010007087	DCTD (ENSVURG00010007106) #16	TENM3 (ENSVURG00010007150) #18	ENSVURG00010007201	ENSVURG00010007209	ENSVURG00010007226	AGA (ENSVURG00010007244) #20	NEIL3 (ENSVURG00010007255) #21	VEGFC (ENSVURG00010007272) #22	SPCS3 (ENSVURG00010007285) #23	ASB5 (ENSVURG00010007296) #24	ENSVURG00010007314	WDR17 (ENSVURG00010007351) #26	GPM6A (ENSVURG00010008007) #27	ENSVURG00010008026	GLRA3 (ENSVURG00010008080) #30	HPGD (ENSVURG00010008239) #31	CEP44 (ENSVURG00010008280) #32	FBXO8 (ENSVURG00010008302) #33	HAND2 (ENSVURG00010008339) #34	SCRG1 (ENSVURG00010008367)	SAP30 (ENSVURG00010008374) #35	HMGB2 (ENSVURG00010008382) #36	ENSVURG00010008399
Wallaby	MODERN SPECIES	5673																ENSMEUG00000001197 #22
Tasmanian devil	MODERN SPECIES	5	STOX2 (ENSSHAG00000009529) #10	TRAPPC11 (ENSSHAG00000001108) #11	RWDD4 (ENSSHAG00000025756) #12	ING2 (ENSSHAG00000025479) #13	CDKN2AIP (ENSSHAG00000031412) #14	ENSSHAG00000013799	ENSSHAG00000013806	WWC2 (ENSSHAG00000013834) #15	ENSSHAG00000027006 #16	TENM3 (ENSSHAG00000015658) #18	ENSSHAG00000028695	ENSSHAG00000018103	ENSSHAG00000021250	AGA (ENSSHAG00000006591) #20	NEIL3 (ENSSHAG00000007680) #21	VEGFC (ENSSHAG00000013634) #22	SPCS3 (ENSSHAG00000026917) #23	ASB5 (ENSSHAG00000015114) #24	ENSSHAG00000015449 #25	WDR17 (ENSSHAG00000015564) #26	GPM6A (ENSSHAG00000016711) #27	GLRA3 (ENSSHAG00000028551) #30	HPGD (ENSSHAG00000008831) #31	ENSSHAG00000010919 #32	FBXO8 (ENSSHAG00000011317) #33	HAND2 (ENSSHAG00000011188) #34	SCRG1 (ENSSHAG00000012103)	SAP30 (ENSSHAG00000024249) #35	HMGB2 (ENSSHAG00000012461) #36	ENSSHAG00000012501 #37	ENSSHAG00000014155
Opossum	MODERN SPECIES	4	ENSMODG00000051244	TRAPPC11 (ENSMODG00000004292) #11	ENSMODG00000025078	RWDD4 (ENSMODG00000004223) #12	ENSMODG00000047937	ING2 (ENSMODG00000004200) #13	CDKN2AIP (ENSMODG00000004192) #14	ENSMODG00000025075	ENSMODG00000025074	WWC2 (ENSMODG00000004171) #15	DCTD (ENSMODG00000004124) #16	TENM3 (ENSMODG00000004107) #18	ENSMODG00000051463	AGA (ENSMODG00000003821) #20	NEIL3 (ENSMODG00000003813) #21	VEGFC (ENSMODG00000003799) #22	SPCS3 (ENSMODG00000040442) #23	ASB5 (ENSMODG00000003766) #24	ENSMODG00000003744 #25	WDR17 (ENSMODG00000003734) #26	GPM6A (ENSMODG00000003704) #27	GLRA3 (ENSMODG00000003650) #30	ENSMODG00000045340	HPGD (ENSMODG00000050122) #31	ENSMODG00000048508	ENSMODG00000003603 #32	FBXO8 (ENSMODG00000003584) #33	HAND2 (ENSMODG00000041860) #34	SCRG1 (ENSMODG00000003543)	SAP30 (ENSMODG00000003536) #35	HMGB2 (ENSMODG00000039182) #36
Platypus	MODERN SPECIES	3	ENSOANG00000036013	PRIMPOL (ENSOANG00000008783)	CASP3 (ENSOANG00000039253) #7	IRF2 (ENSOANG00000039047) #8	ENPP6 (ENSOANG00000009958) #9	ENSOANG00000047270 #10	TRAPPC11 (ENSOANG00000000393) #11	ENSOANG00000006299 #12	ING2 (ENSOANG00000050786) #13	ENSOANG00000048439 #14	ENSOANG00000041602	ENSOANG00000048730	DCTD (ENSOANG00000049130) #16	TENM3 (ENSOANG00000013681) #18	AGA (ENSOANG00000040053) #20	VEGFC (ENSOANG00000015685) #22	SPCS3 (ENSOANG00000015686) #23	ASB5 (ENSOANG00000041691) #24	ENSOANG00000045846 #25	WDR17 (ENSOANG00000003590) #26	GPM6A (ENSOANG00000036971) #27	GLRA3 (ENSOANG00000005603) #30	HPGD (ENSOANG00000005602) #31	ENSOANG00000005601 #32	FBXO8 (ENSOANG00000005600) #33	HAND2 (ENSOANG00000043556) #34	SCRG1 (ENSOANG00000011492)	SAP30 (ENSOANG00000011493) #35	ENSOANG00000044550 #36	GALNT7 (ENSOANG00000011495) #37	ENSOANG00000003214
Sauria	ANCESTRAL SPECIES	6	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00950000185893	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Archosauria	ANCESTRAL SPECIES	1	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00950000185893	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00940000162234	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Aves	ANCESTRAL SPECIES	3	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00940000162234	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00940000167698	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Neognathae	ANCESTRAL SPECIES	5	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Anatidae	ANCESTRAL SPECIES	2	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Duck	MODERN SPECIES	22	ENSAPLG00000023116	FBXO41 (ENSAPLG00000014918)	ENSAPLG00000021748	ENSAPLG00000018305	ENSAPLG00000027296	SFXN5 (ENSAPLG00000005231)	ENSAPLG00000018061	EXOC6B (ENSAPLG00000006898)	ZNF638 (ENSAPLG00000019837)	DCTD (ENSAPLG00000002602) #16	ENSAPLG00000016426 #18	ENSAPLG00000016422 #18	ENSAPLG00000031221	AGA (ENSAPLG00000013364) #20	NEIL3 (ENSAPLG00000013305) #21	VEGFC (ENSAPLG00000005470) #22	SPCS3 (ENSAPLG00000005667) #23	ASB5 (ENSAPLG00000005751) #24	SPATA4 (ENSAPLG00000006032) #25	WDR17 (ENSAPLG00000006133) #26	ENSAPLG00000020184	GPM6A (ENSAPLG00000002472) #27	GLRA3 (ENSAPLG00000002786) #30	HPGD (ENSAPLG00000002860) #31	CEP44 (ENSAPLG00000003165) #32	FBXO8 (ENSAPLG00000003200) #33	SCRG1 (ENSAPLG00000003271)	SAP30 (ENSAPLG00000003274) #35	GALNT7 (ENSAPLG00000003409) #37	HMGB2 (ENSAPLG00000003284) #36	GALNTL6 (ENSAPLG00000003678)
Pink-footed goose	MODERN SPECIES	188														AGA (ENSABRG00000015987) #20	NEIL3 (ENSABRG00000015996) #21	VEGFC (ENSABRG00000016010) #22	ENSABRG00000016016	SPCS3 (ENSABRG00000016019) #23	ASB5 (ENSABRG00000016023) #24	SPATA4 (ENSABRG00000016033) #25	WDR17 (ENSABRG00000016043) #26	GPM6A (ENSABRG00000016049) #27	GLRA3 (ENSABRG00000016068) #30
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000159393	ENSGT00940000155816.b	ENSGT00940000159775	ENSGT00940000158449	ENSGT00890000139463.b.b.b	ENSGT00940000156320	ENSGT00940000155291	ENSGT00940000157548	ENSGT00390000011365.b	ENSGT00940000174851	ENSGT00390000017018.b	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Japanese quail	MODERN SPECIES	22	PRKG2 (ENSCJPG00005009999)	RASGEF1B (ENSCJPG00005009993)	BMP3 (ENSCJPG00005009992)	FGF5 (ENSCJPG00005009989)	PRDM8 (ENSCJPG00005009988)	ANTXR2 (ENSCJPG00005009983)	PAQR3 (ENSCJPG00005009979)	BMP2K (ENSCJPG00005009978)	G3BP2 (ENSCJPG00005009977)	ENSCJPG00005009976	USO1 (ENSCJPG00005009974)	AREG (ENSCJPG00005009972)	EREG (ENSCJPG00005009968)	EPGN (ENSCJPG00005009967)	MTHFD2L (ENSCJPG00005009966)	VEGFC (ENSCJPG00005009963) #22	SPCS3 (ENSCJPG00005009962) #23	ENSCJPG00005009961	ASB5 (ENSCJPG00005009960) #24	SPATA4 (ENSCJPG00005009959) #25	WDR17 (ENSCJPG00005009956) #26	GPM6A (ENSCJPG00005009954) #27	GLRA3 (ENSCJPG00005009946) #30	HPGD (ENSCJPG00005009938) #31	CEP44 (ENSCJPG00005009932) #32	FBXO8 (ENSCJPG00005009931) #33	HAND2 (ENSCJPG00005009924) #34	SCRG1 (ENSCJPG00005009923)	SAP30 (ENSCJPG00005009922) #35	HMGB2 (ENSCJPG00005009916) #36	GALNT7 (ENSCJPG00005009913) #37
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000159025	ENSGT00940000159393	ENSGT00940000155816.b	ENSGT00940000159775	ENSGT00940000158449	ENSGT00890000139463.b.b.b	ENSGT00940000156320	ENSGT00940000155291	ENSGT00940000157548	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000160696	ENSGT00510000048748	ENSGT00510000048556	ENSGT00940000160901	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Chicken	MODERN SPECIES	33	PRKG2 (ENSGALG00010003198)	RASGEF1B (ENSGALG00010002880)	BMP3 (ENSGALG00010002819)	FGF5 (ENSGALG00010002801)	PRDM8 (ENSGALG00010002796)	ANTXR2 (ENSGALG00010003189)	PAQR3 (ENSGALG00010003171)	BMP2K (ENSGALG00010003165)	G3BP2 (ENSGALG00010002459)	USO1 (ENSGALG00010002441)	AREG (ENSGALG00010003223)	EREG (ENSGALG00010003322)	EPGN (ENSGALG00010003315)	MTHFD2L (ENSGALG00010003303)	ENSGALG00010003278	VEGFC (ENSGALG00010003259) #22	SPCS3 (ENSGALG00010003442) #23	ASB5 (ENSGALG00010003412) #24	SPATA4 (ENSGALG00010003397) #25	WDR17 (ENSGALG00010003384) #26	GPM6A (ENSGALG00010003347) #27	GLRA3 (ENSGALG00010002656) #30	HPGD (ENSGALG00010002632) #31	CEP44 (ENSGALG00010002787) #32	FBXO8 (ENSGALG00010002779) #33	HAND2 (ENSGALG00010002982) #34	SCRG1 (ENSGALG00010002956)	SAP30 (ENSGALG00010002943) #35	HMGB2 (ENSGALG00010002939) #36	GALNT7 (ENSGALG00010002937) #37	ENSGALG00010002932
Turkey	MODERN SPECIES	24	ENSMGAG00000006745	ENSMGAG00000006747	ENSMGAG00000006836 #36	GALNT7 (ENSMGAG00000006763) #37	ENSMGAG00000006874	SAP30 (ENSMGAG00000006857) #35	ENSMGAG00000006878 #33	ENSMGAG00000006895 #32	ENSMGAG00000006917 #31	ENSMGAG00000006945 #30	ENSMGAG00000020257 #27	ENSMGAG00000019055 #25	ENSMGAG00000007014 #26	ASB5 (ENSMGAG00000007064) #24	ENSMGAG00000007085 #23	ENSMGAG00000007088 #22	MTHFD2L (ENSMGAG00000007102)	ENSMGAG00000007127	ENSMGAG00000007121	ENSMGAG00000007149	AREG (ENSMGAG00000007140)	ENSMGAG00000007221	ENSMGAG00000007285	ENSMGAG00000007258	ENSMGAG00000007307	ENSMGAG00000018376	ENSMGAG00000007399	ENSMGAG00000007405	ENSMGAG00000007408	ENSMGAG00000007424	PKD2 (ENSMGAG00000007470)
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a
Common canary	MODERN SPECIES	2	ENPP6 (ENSSCAG00000009956) #9	STOX2 (ENSSCAG00000009967) #10	TRAPPC11 (ENSSCAG00000009978) #11	RWDD4 (ENSSCAG00000009990) #12	ING2 (ENSSCAG00000009996) #13	CDKN2AIP (ENSSCAG00000010003) #14	ENSSCAG00000010009	WWC2 (ENSSCAG00000010012) #15	ENSSCAG00000010019	DCTD (ENSSCAG00000010024) #16	ENSSCAG00000010030	ENSSCAG00000010063 #18	ENSSCAG00000010138 #18	AGA (ENSSCAG00000010144) #20	NEIL3 (ENSSCAG00000010148) #21	VEGFC (ENSSCAG00000010159) #22	SPCS3 (ENSSCAG00000010167) #23	ASB5 (ENSSCAG00000010170) #24	WDR17 (ENSSCAG00000010175) #26	GPM6A (ENSSCAG00000010193) #27	GLRA3 (ENSSCAG00000010203) #30	HPGD (ENSSCAG00000010216) #31	CEP44 (ENSSCAG00000010219) #32	FBXO8 (ENSSCAG00000010222) #33	HAND2 (ENSSCAG00000010229) #34	SCRG1 (ENSSCAG00000010237)	SAP30 (ENSSCAG00000010239) #35	HMGB2 (ENSSCAG00000010243) #36	GALNT7 (ENSSCAG00000010245) #37	GALNTL6 (ENSSCAG00000010253)	AADAT (ENSSCAG00000010261)
Zebra finch	MODERN SPECIES	25	CASP3 (ENSTGUG00000006682) #7	IRF2 (ENSTGUG00000006662) #8	ENPP6 (ENSTGUG00000006653) #9	STOX2 (ENSTGUG00000006645) #10	TRAPPC11 (ENSTGUG00000006590) #11	RWDD4 (ENSTGUG00000006580) #12	ING2 (ENSTGUG00000006578) #13	CDKN2AIP (ENSTGUG00000018986) #14	ENSTGUG00000006572	ENSTGUG00000026343	WWC2 (ENSTGUG00000006543) #15	DCTD (ENSTGUG00000006536) #16	TENM3 (ENSTGUG00000006481) #18	AGA (ENSTGUG00000006468) #20	NEIL3 (ENSTGUG00000006458) #21	VEGFC (ENSTGUG00000006451) #22	SPCS3 (ENSTGUG00000006441) #23	ASB5 (ENSTGUG00000006421) #24	WDR17 (ENSTGUG00000006388) #26	GPM6A (ENSTGUG00000006358) #27	GLRA3 (ENSTGUG00000006325) #30	HPGD (ENSTGUG00000006311) #31	CEP44 (ENSTGUG00000006297) #32	FBXO8 (ENSTGUG00000006285) #33	ENSTGUG00000027176	HAND2 (ENSTGUG00000006281) #34	SCRG1 (ENSTGUG00000006280)	SAP30 (ENSTGUG00000006275) #35	HMGB2 (ENSTGUG00000006267) #36	GALNT7 (ENSTGUG00000006243) #37	GALNTL6 (ENSTGUG00000006232)
Medium ground finch	MODERN SPECIES		CASP3 (ENSGFOG00000007587) #7	IRF2 (ENSGFOG00000007601) #8	ENPP6 (ENSGFOG00000007617) #9	STOX2 (ENSGFOG00000007626) #10	TRAPPC11 (ENSGFOG00000007633) #11	RWDD4 (ENSGFOG00000007667) #12	ING2 (ENSGFOG00000007679) #13	CDKN2AIP (ENSGFOG00000007689) #14	ENSGFOG00000007698	WWC2 (ENSGFOG00000007703) #15	DCTD (ENSGFOG00000007713) #16	TENM3 (ENSGFOG00000007869) #18	ENSGFOG00000010900	AGA (ENSGFOG00000010904) #20	NEIL3 (ENSGFOG00000010910) #21	VEGFC (ENSGFOG00000010919) #22	SPCS3 (ENSGFOG00000010925) #23	ASB5 (ENSGFOG00000010931) #24	WDR17 (ENSGFOG00000010966) #26	GPM6A (ENSGFOG00000011465) #27	GLRA3 (ENSGFOG00000011470) #30	HPGD (ENSGFOG00000011504) #31	CEP44 (ENSGFOG00000011514) #32	FBXO8 (ENSGFOG00000011522) #33	HAND2 (ENSGFOG00000000006) #34	SCRG1 (ENSGFOG00000000150)	SAP30 (ENSGFOG00000000154) #35	HMGB2 (ENSGFOG00000000158) #36	GALNT7 (ENSGFOG00000000167) #37	GALNTL6 (ENSGFOG00000000182)	AADAT (ENSGFOG00000000202)
Flycatcher	MODERN SPECIES	22	CASP3 (ENSFALG00000011745) #7	IRF2 (ENSFALG00000011727) #8	ENPP6 (ENSFALG00000011715) #9	STOX2 (ENSFALG00000011708) #10	TRAPPC11 (ENSFALG00000011667) #11	RWDD4 (ENSFALG00000011646) #12	ING2 (ENSFALG00000014622) #13	CDKN2AIP (ENSFALG00000011643) #14	ENSFALG00000014601	WWC2 (ENSFALG00000011638) #15	DCTD (ENSFALG00000027516) #16	ENSFALG00000025955	TENM3 (ENSFALG00000011630) #18	AGA (ENSFALG00000026144) #20	NEIL3 (ENSFALG00000011605) #21	VEGFC (ENSFALG00000011590) #22	SPCS3 (ENSFALG00000024232) #23	ASB5 (ENSFALG00000011570) #24	WDR17 (ENSFALG00000011543) #26	GPM6A (ENSFALG00000025678) #27	GLRA3 (ENSFALG00000011516) #30	HPGD (ENSFALG00000025221) #31	CEP44 (ENSFALG00000011499) #32	FBXO8 (ENSFALG00000024067) #33	HAND2 (ENSFALG00000011490) #34	SCRG1 (ENSFALG00000011488)	SAP30 (ENSFALG00000011481) #35	HMGB2 (ENSFALG00000011474) #36	ENSFALG00000011458	GALNTL6 (ENSFALG00000011441)	AADAT (ENSFALG00000011425)
Great tit	MODERN SPECIES	23	ENPP6 (ENSPMJG00000002212) #9	STOX2 (ENSPMJG00000002130) #10	TRAPPC11 (ENSPMJG00000002099) #11	RWDD4 (ENSPMJG00000002084) #12	ING2 (ENSPMJG00000002082) #13	CDKN2AIP (ENSPMJG00000002066) #14	ENSPMJG00000001952	WWC2 (ENSPMJG00000001943) #15	DCTD (ENSPMJG00000001934) #16	ENSPMJG00000001933	TENM3 (ENSPMJG00000001818) #18	AGA (ENSPMJG00000001779) #20	NEIL3 (ENSPMJG00000001773) #21	SPCS3 (ENSPMJG00000001714) #23	ASB5 (ENSPMJG00000001700) #24	VEGFC (ENSPMJG00000001686) #22	WDR17 (ENSPMJG00000001630) #26	GPM6A (ENSPMJG00000001622) #27	GLRA3 (ENSPMJG00000001600) #30	HPGD (ENSPMJG00000001582) #31	CEP44 (ENSPMJG00000001567) #32	FBXO8 (ENSPMJG00000001560) #33	HAND2 (ENSPMJG00000001532) #34	SCRG1 (ENSPMJG00000001521)	SAP30 (ENSPMJG00000001518) #35	HMGB2 (ENSPMJG00000001512) #36	GALNT7 (ENSPMJG00000001488) #37	GALNTL6 (ENSPMJG00000001432)	AADAT (ENSPMJG00000001338)	MFAP3L (ENSPMJG00000001336)	ENSPMJG00000001293
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b.a	ENSGT00940000161922.i.b.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a
Kakapo	MODERN SPECIES	24	ENSSHBG00005013045 #9	ENSSHBG00005013054 #9	STOX2 (ENSSHBG00005013069) #10	ENSSHBG00005013077 #10	TRAPPC11 (ENSSHBG00005013088) #11	RWDD4 (ENSSHBG00005013100) #12	ING2 (ENSSHBG00005013117) #13	CDKN2AIP (ENSSHBG00005013134) #14	ENSSHBG00005013144	WWC2 (ENSSHBG00005013182) #15	DCTD (ENSSHBG00005013251) #16	TENM3 (ENSSHBG00005013307) #18	AGA (ENSSHBG00005013414) #20	NEIL3 (ENSSHBG00005013429) #21	ENSSHBG00005013439	VEGFC (ENSSHBG00005013455) #22	SPCS3 (ENSSHBG00005013467) #23	ASB5 (ENSSHBG00005013483) #24	ENSSHBG00005013504 #26	ENSSHBG00005013523 #26	GPM6A (ENSSHBG00005013531) #27	GLRA3 (ENSSHBG00005013547) #30	HPGD (ENSSHBG00005013562) #31	CEP44 (ENSSHBG00005013578) #32	FBXO8 (ENSSHBG00005013595) #33	HAND2 (ENSSHBG00005013605) #34	SCRG1 (ENSSHBG00005013612)	SAP30 (ENSSHBG00005013619) #35	HMGB2 (ENSSHBG00005013630) #36	ENSSHBG00005013638	GALNTL6 (ENSSHBG00005013651)
Golden eagle	MODERN SPECIES		IRF2 (ENSACCG00020010129) #8	ENPP6 (ENSACCG00020010158) #9	STOX2 (ENSACCG00020010178) #10	TRAPPC11 (ENSACCG00020010191) #11	RWDD4 (ENSACCG00020010211) #12	ING2 (ENSACCG00020010222) #13	ENSACCG00020010238 #14	ENSACCG00020010248 #14	ENSACCG00020010255	ENSACCG00020010270	WWC2 (ENSACCG00020010330) #15	DCTD (ENSACCG00020010359) #16	TENM3 (ENSACCG00020010429) #18	AGA (ENSACCG00020010484) #20	NEIL3 (ENSACCG00020010497) #21	VEGFC (ENSACCG00020010512) #22	SPCS3 (ENSACCG00020010530) #23	ASB5 (ENSACCG00020010555) #24	WDR17 (ENSACCG00020010660) #26	GPM6A (ENSACCG00020010783) #27	GLRA3 (ENSACCG00020010806) #30	HPGD (ENSACCG00020010819) #31	CEP44 (ENSACCG00020010838) #32	FBXO8 (ENSACCG00020010854) #33	HAND2 (ENSACCG00020010872) #34	SCRG1 (ENSACCG00020010883)	SAP30 (ENSACCG00020010894) #35	HMGB2 (ENSACCG00020010908) #36	GALNT7 (ENSACCG00020010938) #37	GALNTL6 (ENSACCG00020010971)	AADAT (ENSACCG00020000281)
African ostrich	MODERN SPECIES	664	IRF2 (ENSSCUG00000007518) #8	ENPP6 (ENSSCUG00000007511) #9	STOX2 (ENSSCUG00000007508) #10	TRAPPC11 (ENSSCUG00000007446) #11	RWDD4 (ENSSCUG00000007404) #12	ING2 (ENSSCUG00000007399) #13	CDKN2AIP (ENSSCUG00000007398) #14	ENSSCUG00000007394	ENSSCUG00000007393	WWC2 (ENSSCUG00000007389) #15	DCTD (ENSSCUG00000007382) #16	ENSSCUG00000007357 #18	ENSSCUG00000007328 #18	AGA (ENSSCUG00000007321) #20	NEIL3 (ENSSCUG00000007318) #21	VEGFC (ENSSCUG00000007317) #22	SPCS3 (ENSSCUG00000007315) #23	ASB5 (ENSSCUG00000007313) #24	ENSSCUG00000007312	ENSSCUG00000007311 #26	ENSSCUG00000007309 #26	ENSSCUG00000007306	GPM6A (ENSSCUG00000007305) #27	GLRA3 (ENSSCUG00000007296) #30	HPGD (ENSSCUG00000007293) #31	CEP44 (ENSSCUG00000007288) #32	FBXO8 (ENSSCUG00000007287) #33	SCRG1 (ENSSCUG00000007277)	SAP30 (ENSSCUG00000007276) #35	HMGB2 (ENSSCUG00000007274) #36	GALNT7 (ENSSCUG00000007265) #37
Australian saltwater crocodile	MODERN SPECIES	33	IRF2 (ENSCPRG00005000275) #8	ENPP6 (ENSCPRG00005000200) #9	STOX2 (ENSCPRG00005000172) #10	TRAPPC11 (ENSCPRG00005000128) #11	RWDD4 (ENSCPRG00005000113) #12	ENSCPRG00005000104	ING2 (ENSCPRG00005000098) #13	ENSCPRG00005000093 #14	ENSCPRG00005000087	WWC2 (ENSCPRG00005000071) #15	DCTD (ENSCPRG00005000066) #16	ENSCPRG00005011479 #18	ENSCPRG00005011461 #18	AGA (ENSCPRG00005011436) #20	NEIL3 (ENSCPRG00005011433) #21	VEGFC (ENSCPRG00005011429) #22	SPCS3 (ENSCPRG00005011423) #23	ASB5 (ENSCPRG00005011420) #24	SPATA4 (ENSCPRG00005011405) #25	WDR17 (ENSCPRG00005011361) #26	GPM6A (ENSCPRG00005011345) #27	ENSCPRG00005011335	GLRA3 (ENSCPRG00005011331) #30	ENSCPRG00005011327	CEP44 (ENSCPRG00005011324) #32	FBXO8 (ENSCPRG00005011320) #33	HAND2 (ENSCPRG00005011318) #34	SCRG1 (ENSCPRG00005011314)	SAP30 (ENSCPRG00005011312) #35	HMGB2 (ENSCPRG00005011309) #36	GALNT7 (ENSCPRG00005011291) #37
Cryptodira	ANCESTRAL SPECIES	2	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00950000185893	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000168298
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00950000185893	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000168298
Emydidae	ANCESTRAL SPECIES	1	ENSGT01050000246068	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00950000185893	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000168298
Three-toed box turtle	MODERN SPECIES	26	IRF2 (ENSTMTG00000006062) #8	ENPP6 (ENSTMTG00000005829) #9	STOX2 (ENSTMTG00000005793) #10	TRAPPC11 (ENSTMTG00000005709) #11	RWDD4 (ENSTMTG00000005667) #12	ENSTMTG00000005652	ING2 (ENSTMTG00000005641) #13	ENSTMTG00000005613 #14	ENSTMTG00000005598 #14	ENSTMTG00000005586	WWC2 (ENSTMTG00000005538) #15	DCTD (ENSTMTG00000005516) #16	TENM3 (ENSTMTG00000005465) #18	AGA (ENSTMTG00000005446) #20	ENSTMTG00000005431	VEGFC (ENSTMTG00000005414) #22	SPCS3 (ENSTMTG00000005407) #23	ASB5 (ENSTMTG00000005377) #24	SPATA4 (ENSTMTG00000005358) #25	WDR17 (ENSTMTG00000005197) #26	GPM6A (ENSTMTG00000005149) #27	GLRA3 (ENSTMTG00000005114) #30	HPGD (ENSTMTG00000005087) #31	CEP44 (ENSTMTG00000004951) #32	FBXO8 (ENSTMTG00000004929) #33	HAND2 (ENSTMTG00000004921) #34	SCRG1 (ENSTMTG00000004909)	SAP30 (ENSTMTG00000004897) #35	HMGB2 (ENSTMTG00000004883) #36	GALNT7 (ENSTMTG00000004870) #37	ENSTMTG00000004848
painted turtle	MODERN SPECIES	2398								KNDC1 (ENSCPBG00000003512)	ENSCPBG00000003486	ENSCPBG00000003476	ENSCPBG00000003472	ENSCPBG00000003431	ENSCPBG00000003388	AGA (ENSCPBG00000003373) #20	NEIL3 (ENSCPBG00000003366) #21	VEGFC (ENSCPBG00000003340) #22	SPCS3 (ENSCPBG00000003333) #23	ASB5 (ENSCPBG00000003322) #24	SPATA4 (ENSCPBG00000003310) #25	WDR17 (ENSCPBG00000003187) #26	ENSCPBG00000003152	ENSCPBG00000003132	ENSCPBG00000003119	GPM6A (ENSCPBG00000003095) #27
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00390000003901	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Goode s thornscrub tortoise	MODERN SPECIES	19	ENPP6 (ENSGEVG00005002964) #9	STOX2 (ENSGEVG00005003037) #10	TRAPPC11 (ENSGEVG00005003067) #11	RWDD4 (ENSGEVG00005003154) #12	ENSGEVG00005003168	ING2 (ENSGEVG00005003175) #13	ENSGEVG00005003189 #14	ENSGEVG00005003196	ENSGEVG00005003207 #15	ENSGEVG00005003220 #15	ENSGEVG00005003226 #15	DCTD (ENSGEVG00005003233) #16	ENSGEVG00005003257 #18	AGA (ENSGEVG00005003296) #20	ENSGEVG00005003316	VEGFC (ENSGEVG00005003328) #22	SPCS3 (ENSGEVG00005003340) #23	ASB5 (ENSGEVG00005003356) #24	SPATA4 (ENSGEVG00005003382) #25	WDR17 (ENSGEVG00005003558) #26	GPM6A (ENSGEVG00005003929) #27	GLRA3 (ENSGEVG00005003944) #30	HPGD (ENSGEVG00005003961) #31	CEP44 (ENSGEVG00005003971) #32	FBXO8 (ENSGEVG00005004010) #33	HAND2 (ENSGEVG00005004018) #34	SCRG1 (ENSGEVG00005004025)	SAP30 (ENSGEVG00005004034) #35	HMGB2 (ENSGEVG00005004044) #36	GALNT7 (ENSGEVG00005004062) #37	ENSGEVG00005004085
Abingdon island giant tortoise	MODERN SPECIES	957														AGA (ENSCABG00000006578) #20	NEIL3 (ENSCABG00000006566) #21	VEGFC (ENSCABG00000006563) #22
Chinese turtle	MODERN SPECIES	1725																VEGFC (ENSPSIG00000009246) #22	ENSPSIG00000009382	SPCS3 (ENSPSIG00000009649) #23	ASB5 (ENSPSIG00000009661) #24	SPATA4 (ENSPSIG00000009753) #25	WDR17 (ENSPSIG00000009824) #26	GPM6A (ENSPSIG00000010103) #27	ENSPSIG00000010257	ENSPSIG00000010262
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Laterata	ANCESTRAL SPECIES	9	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00950000185893	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000162234	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873.a #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Common wall lizard	MODERN SPECIES	17	TRAPPC11 (ENSPMRG00000009825) #11	RWDD4 (ENSPMRG00000009881) #12	ENSPMRG00000009896	ING2 (ENSPMRG00000009899) #13	ENSPMRG00000009905 #14	ENSPMRG00000009910 #14	ENSPMRG00000009913	WWC2 (ENSPMRG00000009963) #15	DCTD (ENSPMRG00000010175) #16	ENSPMRG00000010196 #18	ENSPMRG00000010294 #18	ENSPMRG00000010303 #18	ENSPMRG00000010312	AGA (ENSPMRG00000010319) #20	NEIL3 (ENSPMRG00000010325) #21	VEGFC (ENSPMRG00000010331) #22	SPCS3 (ENSPMRG00000010334) #23	ASB5 (ENSPMRG00000010339) #24	SPATA4 (ENSPMRG00000010345) #25	WDR17 (ENSPMRG00000010350) #26	GPM6A (ENSPMRG00000010361) #27	ENSPMRG00000010367	GLRA3 (ENSPMRG00000010369) #30	HPGD (ENSPMRG00000010378) #31	ENSPMRG00000010383 #32	ENSPMRG00000010390 #32	FBXO8 (ENSPMRG00000010399) #33	ENSPMRG00000010404	ENSPMRG00000010414	HAND2 (ENSPMRG00000010419) #34	SCRG1 (ENSPMRG00000010423)
Argentine black and white tegu	MODERN SPECIES	26	ENPP6 (ENSSMRG00000009673) #9	STOX2 (ENSSMRG00000009671) #10	TRAPPC11 (ENSSMRG00000009617) #11	RWDD4 (ENSSMRG00000009615) #12	ENSSMRG00000009614	ING2 (ENSSMRG00000009613) #13	ENSSMRG00000009609 #14	ENSSMRG00000009607	WWC2 (ENSSMRG00000009600) #15	DCTD (ENSSMRG00000009584) #16	ENSSMRG00000009575	TENM3 (ENSSMRG00000009568) #18	ENSSMRG00000009539	AGA (ENSSMRG00000009489) #20	NEIL3 (ENSSMRG00000009488) #21	VEGFC (ENSSMRG00000009460) #22	SPCS3 (ENSSMRG00000009459) #23	ASB5 (ENSSMRG00000009458) #24	SPATA4 (ENSSMRG00000009454) #25	WDR17 (ENSSMRG00000009452) #26	GPM6A (ENSSMRG00000009451) #27	ENSSMRG00000009408	GLRA3 (ENSSMRG00000009406) #30	HPGD (ENSSMRG00000009397) #31	CEP44 (ENSSMRG00000009396) #32	FBXO8 (ENSSMRG00000009395) #33	HAND2 (ENSSMRG00000009378) #34	SCRG1 (ENSSMRG00000009363)	SAP30 (ENSSMRG00000009362) #35	HMGB2 (ENSSMRG00000009361) #36	GALNT7 (ENSSMRG00000009360) #37
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Elapidae	ANCESTRAL SPECIES	11	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021.a	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b.w.a #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000006633.b #35	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a	ENSGT00390000011576.a
Indian cobra	MODERN SPECIES	3	PRIMPOL (ENSNNAG00000011991)	IRF2 (ENSNNAG00000012082) #8	ENPP6 (ENSNNAG00000012210) #9	STOX2 (ENSNNAG00000012240) #10	TRAPPC11 (ENSNNAG00000012275) #11	RWDD4 (ENSNNAG00000012437) #12	ENSNNAG00000012459	ING2 (ENSNNAG00000012523) #13	ENSNNAG00000007511 #14	ENSNNAG00000007529	WWC2 (ENSNNAG00000007564) #15	DCTD (ENSNNAG00000007729) #16	TENM3 (ENSNNAG00000007811) #18	AGA (ENSNNAG00000007902) #20	NEIL3 (ENSNNAG00000007929) #21	VEGFC (ENSNNAG00000007968) #22	SPCS3 (ENSNNAG00000008000) #23	ASB5 (ENSNNAG00000008020) #24	SPATA4 (ENSNNAG00000008079) #25	WDR17 (ENSNNAG00000008274) #26	GPM6A (ENSNNAG00000010745) #27	GLRA3 (ENSNNAG00000010772) #30	HPGD (ENSNNAG00000010823) #31	CEP44 (ENSNNAG00000010850) #32	FBXO8 (ENSNNAG00000010885) #33	HAND2 (ENSNNAG00000010908) #34	ENSNNAG00000010919	SAP30 (ENSNNAG00000010956) #35	ENSNNAG00000010984 #37	ENSNNAG00000011003 #37	GALNTL6 (ENSNNAG00000011025)
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550.b #11	ENSGT00390000006550.a #11	ENSGT00390000015545 #12	ENSGT00940000167021.a	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b.w.a #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000006633.b #35	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00390000004594.a	ENSGT00390000011576.a
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00520000055589.d #10	ENSGT00390000006550.b #11	ENSGT00390000006550.a #11	ENSGT00390000015545 #12	ENSGT00940000167021.a	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b.w.a #15	ENSGT00940000153676.a #16	ENSGT00910000148572	ENSGT01030000234566.e.b.a.a #18	ENSGT00990000212018	ENSGT00950000183045.C #20	ENSGT00990000214110	ENSGT00940000156167.b #22	ENSGT00940000154267.A	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000006633.b #35	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00940000153432.A.a.f
Eastern brown snake	MODERN SPECIES	12	RWDD4 (ENSPTXG00000001100) #12	ENSPTXG00000001107	ING2 (ENSPTXG00000001117) #13	ENSPTXG00000001122 #14	ENSPTXG00000001127	WWC2 (ENSPTXG00000001132) #15	DCTD (ENSPTXG00000001137) #16	TENM3 (ENSPTXG00000001152) #18	NACA2 (ENSPTXG00000001171)	ENSPTXG00000001175	ENSPTXG00000001177	ENSPTXG00000001184	ENSPTXG00000001216	AGA (ENSPTXG00000002658) #20	ENSPTXG00000002660	VEGFC (ENSPTXG00000002663) #22	ENSPTXG00000002666	SPCS3 (ENSPTXG00000002669) #23	ASB5 (ENSPTXG00000002674) #24	SPATA4 (ENSPTXG00000002678) #25	WDR17 (ENSPTXG00000002692) #26	ENSPTXG00000002766 #27	ENSPTXG00000002769 #27	GLRA3 (ENSPTXG00000002774) #30	HPGD (ENSPTXG00000002779) #31	CEP44 (ENSPTXG00000002780) #32	FBXO8 (ENSPTXG00000002781) #33	HAND2 (ENSPTXG00000002784) #34	ENSPTXG00000002786	SAP30 (ENSPTXG00000002789) #35	GALNT7 (ENSPTXG00000002791) #37
Mainland tiger snake	MODERN SPECIES	18	RWDD4 (ENSNSUG00000009648) #12	ING2 (ENSNSUG00000009662) #13	CDKN2AIP (ENSNSUG00000009664) #14	ENSNSUG00000009665	ENSNSUG00000009666 #15	ENSNSUG00000009667 #15	ENSNSUG00000009668 #15	ENSNSUG00000009669 #15	DCTD (ENSNSUG00000009670) #16	ENSNSUG00000009671	TENM3 (ENSNSUG00000009672) #18	ENSNSUG00000009674	ENSNSUG00000009675	AGA (ENSNSUG00000009676) #20	ENSNSUG00000009677	VEGFC (ENSNSUG00000009678) #22	ENSNSUG00000009680	SPCS3 (ENSNSUG00000009681) #23	ASB5 (ENSNSUG00000009682) #24	SPATA4 (ENSNSUG00000009685) #25	WDR17 (ENSNSUG00000009691) #26	GPM6A (ENSNSUG00000009700) #27	GLRA3 (ENSNSUG00000009701) #30	HPGD (ENSNSUG00000009702) #31	ENSNSUG00000009703	FBXO8 (ENSNSUG00000009704) #33
Blue-lipped sea krait	MODERN SPECIES	856																VEGFC (ENSLLTG00000002051) #22
Lizard	MODERN SPECIES	4	ENSACAG00000006976 #14	ENSACAG00000042349 #14	ENSACAG00000021129	WWC2 (ENSACAG00000006981) #15	ENSACAG00000013740 #18	ENSACAG00000038458	ENSACAG00000039500	ENSACAG00000044462	ENSACAG00000042274	ENSACAG00000035331	ENSACAG00000027395	ENSACAG00000037307	ENSACAG00000037501	AGA (ENSACAG00000006001) #20	NEIL3 (ENSACAG00000005988) #21	VEGFC (ENSACAG00000005947) #22	SPCS3 (ENSACAG00000037498) #23	ASB5 (ENSACAG00000005887) #24	SPATA4 (ENSACAG00000005859) #25	WDR17 (ENSACAG00000005767) #26	ENSACAG00000039453	ENSACAG00000038260	ZNF827 (ENSACAG00000003618)	MMAA (ENSACAG00000003592)	SMAD1 (ENSACAG00000003544)	OTUD4 (ENSACAG00000003512)	ENSACAG00000042301	ABCE1 (ENSACAG00000003386)	ANAPC10 (ENSACAG00000003368)	HHIP (ENSACAG00000003315)	ENSACAG00000044086
tuatara	MODERN SPECIES	1940																VEGFC (ENSSPUG00000010506) #22	SPCS3 (ENSSPUG00000010524) #23	ASB5 (ENSSPUG00000010545) #24	SPATA4 (ENSSPUG00000010586) #25	WDR17 (ENSSPUG00000010629) #26	GPM6A (ENSSPUG00000010747) #27
Anura	ANCESTRAL SPECIES	2	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000158376 #14	ENSGT00940000161922.i.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT00950000183045.C #20	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00390000006633.b #35	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Frog	MODERN SPECIES		trappc11 (ENSXETG00000019069) #11	rwdd4 (ENSXETG00000019065) #12	ENSXETG00000039273	ing2 (ENSXETG00000019052) #13	ENSXETG00000041521	cdkn2aip (ENSXETG00000019049) #14	ENSXETG00000034028	ENSXETG00000044938	wwc2 (ENSXETG00000025753) #15	dctd (ENSXETG00000019042) #16	tenm3 (ENSXETG00000031472) #18	ENSXETG00000048545	aga (ENSXETG00000009427) #20	neil3 (ENSXETG00000030606) #21	ENSXETG00000043475	vegfc (ENSXETG00000002447) #22	ENSXETG00000043390	spcs3 (ENSXETG00000036663) #23	asb5 (ENSXETG00000040581) #24	spata4 (ENSXETG00000038630) #25	wdr17 (ENSXETG00000002453) #26	gpm6a (ENSXETG00000036810) #27	ENSXETG00000041411	glra3 (ENSXETG00000002460) #30	cep44 (ENSXETG00000032956) #32	fbxo8 (ENSXETG00000016906) #33	ENSXETG00000045901	hand2 (ENSXETG00000016908) #34	scrg1 (ENSXETG00000036235)	hmgb2 (ENSXETG00000016916) #36	sap30 (ENSXETG00000016915) #35
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000021589	ENSLLEG00000021452	WWC2 (ENSLLEG00000020987) #15	DCTD (ENSLLEG00000020780) #16	ENSLLEG00000020690	ENSLLEG00000019325 #18	ENSLLEG00000019056 #18	ENSLLEG00000019020	ENSLLEG00000018938	ENSLLEG00000018922	ENSLLEG00000018893	ENSLLEG00000018874	ENSLLEG00000018846	AGA (ENSLLEG00000018494) #20	NEIL3 (ENSLLEG00000018371) #21	VEGFC (ENSLLEG00000018299) #22	ENSLLEG00000018286	SPCS3 (ENSLLEG00000018192) #23	ASB5 (ENSLLEG00000017956) #24	ENSLLEG00000017850	ENSLLEG00000017373 #25	ENSLLEG00000017316	WDR17 (ENSLLEG00000016137) #26	GPM6A (ENSLLEG00000015714) #27	GLRA3 (ENSLLEG00000014704) #30	HPGD (ENSLLEG00000014587) #31	CEP44 (ENSLLEG00000014485) #32	FBXO8 (ENSLLEG00000014415) #33	ENSLLEG00000014388	ENSLLEG00000014375	HAND2 (ENSLLEG00000014340) #34
Coelacanth	MODERN SPECIES	1575																VEGFC (ENSLACG00000002200) #22	SPCS3 (ENSLACG00000022247) #23	ASB5 (ENSLACG00000010372) #24	SPATA4 (ENSLACG00000011126) #25	ENSLACG00000011695
Actinopterygii	ANCESTRAL SPECIES	21	ENSGT00940000165411.b	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00940000163251.b	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Neopterygii	ANCESTRAL SPECIES	2	ENSGT00940000165411.b	ENSGT00940000160388	ENSGT00940000154508.a.a	ENSGT00390000015511	ENSGT00390000003901	ENSGT00940000153232.a.b #7	ENSGT00940000159063 #8	ENSGT00940000158457 #9	ENSGT00520000055589.d #10	ENSGT00940000163251.b	ENSGT00390000006550 #11	ENSGT00390000015545 #12	ENSGT00940000167021	ENSGT00940000158194 #13	ENSGT00940000153230.A #21	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00910000144159.B #25	ENSGT00940000158602 #26	ENSGT00390000006915.d #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Osteoglossocephalai	ANCESTRAL SPECIES	14												ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a #18	ENSGT01030000234566.f ##18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.i #27	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Clupeocephala	ANCESTRAL SPECIES	26												ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT01030000234566.e.b.a.a.b #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.i #27	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466 #36	ENSGT00940000158105 #37
Otomorpha	ANCESTRAL SPECIES	57												ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT01030000234566.e.b.a.a.b #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.i #27	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466.cc #36	ENSGT00940000158105 #37	ENSGT00940000155038
Clupeiformes	ANCESTRAL SPECIES	22	ENSGT00940000157090.h	ENSGT00950000183174.B.a.e	ENSGT00870000137155	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00950000182915.a.a.b	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00940000157580.a.b	ENSGT00410000025556.a.a.a.b.a #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00990000207961	ENSGT00940000159958.c	ENSGT00950000183159.a.v.a	ENSGT00940000157306	ENSGT00940000155988.c	ENSGT00940000154372.a.b.a	ENSGT00940000154372.a.a.b	ENSGT00530000063586.b.c.a	ENSGT00390000010628.a	ENSGT00390000005639.a.a.n	ENSGT00390000000470.m	ENSGT00390000015958.c	ENSGT00940000158194 #13	ENSGT00520000055589.d.a.b #10
Atlantic herring	MODERN SPECIES	14	naa15b (ENSCHAG00000014034)	ENSCHAG00000014006	ENSCHAG00000013941	scoca (ENSCHAG00000013928)	clgn (ENSCHAG00000013427)	fam184b (ENSCHAG00000013410)	med28 (ENSCHAG00000013382)	lap3 (ENSCHAG00000012553)	clrn2 (ENSCHAG00000012507)	kitb (ENSCHAG00000012047)	clockb (ENSCHAG00000010310)	ENSCHAG00000010243 #15	ENSCHAG00000010259 #15	dctd (ENSCHAG00000010185) #16	TENM3 (ENSCHAG00000006766) #18	vegfc (ENSCHAG00000006654) #22	spcs3 (ENSCHAG00000006598) #23	asb5b (ENSCHAG00000006570)	ACER2 (ENSCHAG00000006517)	ENSCHAG00000006496	ENSCHAG00000006480	limch1a (ENSCHAG00000005837)	uchl1 (ENSCHAG00000005743)	anxa5b (ENSCHAG00000002839)	ENSCHAG00000002566	fgfbp2b (ENSCHAG00000002529)	prom1b (ENSCHAG00000025619)	tapt1b (ENSCHAG00000025603)	ldb2b (ENSCHAG00000025587)	qdprb.4 (ENSCHAG00000025580)	ccdc149b (ENSCHAG00000025567)
Denticle herring	MODERN SPECIES	14	naa15b (ENSDCDG00000021850)	ENSDCDG00000021842	scoca (ENSDCDG00000021836)	ENSDCDG00000021161	fam184b (ENSDCDG00000021137)	ENSDCDG00000021130	med28 (ENSDCDG00000021128)	lap3 (ENSDCDG00000021005)	clrn2 (ENSDCDG00000021002)	kitb (ENSDCDG00000020603)	clockb (ENSDCDG00000019632)	WWC2 (ENSDCDG00000019561) #15	dctd (ENSDCDG00000019547) #16	ENSDCDG00000019544	TENM3 (ENSDCDG00000016011) #18	vegfc (ENSDCDG00000015874) #22	spcs3 (ENSDCDG00000015869) #23	asb5b (ENSDCDG00000015861)	ENSDCDG00000015856	ENSDCDG00000015852	ENSDCDG00000015848	ENSDCDG00000015846	uchl1 (ENSDCDG00000015749)	ENSDCDG00000015743	fgfbp2b (ENSDCDG00000015738)	prom1b (ENSDCDG00000015558)	ENSDCDG00000015483	limch1a (ENSDCDG00000015502)	uchl1 (ENSDCDG00000015454)	anxa5b (ENSDCDG00000011068)	ENSDCDG00000010819
Otophysi	ANCESTRAL SPECIES	79			ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334	ENSGT00390000001289.a	ENSGT00940000158194 #13	ENSGT00520000055589.d.a.b #10	ENSGT00390000011766	ENSGT00940000159063.f #8	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT01030000234566.e.b.a.a.b #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.i #27	ENSGT01080000257376.a.b.a.a	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466.cc #36	ENSGT00940000158105 #37	ENSGT00940000155038
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00940000155140.t	ENSGT00940000156393.a.b	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00390000015958.c	ENSGT00940000157294.c	ENSGT00940000160334	ENSGT00390000001289.a	ENSGT00940000158194 #13	ENSGT00520000055589.d.a.b #10	ENSGT00390000011766	ENSGT00940000159063.f #8	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466.cc #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00510000046787.e.a	ENSGT00740000117197
Channel catfish	MODERN SPECIES	22	pdcd4a (ENSIPUG00000002299)	ENSIPUG00000002324	ccdc149b (ENSIPUG00000002331)	lgi2b (ENSIPUG00000002354)	cdk2ap2 (ENSIPUG00000002396)	aip (ENSIPUG00000002402)	SOD3 (ENSIPUG00000002419)	ing2 (ENSIPUG00000002434) #13	stox2 (ENSIPUG00000002443) #10	tmem134 (ENSIPUG00000002462)	irf2a (ENSIPUG00000002472) #8	Dctd (ENSIPUG00000002486) #16	ENSIPUG00000002498 #16	TENM3 (ENSIPUG00000002505) #18	ENSIPUG00000002575	VEGFC (ENSIPUG00000002582) #22	SPCS3 (ENSIPUG00000002609) #23	tapbp (ENSIPUG00000002618)	asb5 (ENSIPUG00000002631)	wdr17 (ENSIPUG00000002658) #26	ENSIPUG00000002687	ENSIPUG00000002694	ENSIPUG00000002705	ENSIPUG00000002708	ENSIPUG00000002719	ENSIPUG00000002724	ENSIPUG00000002735	ENSIPUG00000002740	gpm6a (ENSIPUG00000002750) #27	glra3 (ENSIPUG00000002794) #30	HPGD (ENSIPUG00000003061) #31
Characiphysae_b	ANCESTRAL SPECIES	76											ENSGT00520000055589.d.a.b #10	ENSGT00390000011766	ENSGT00940000159063.f #8	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466.cc #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00510000046787.e.a	ENSGT00740000117197
Electric eel	MODERN SPECIES	285													ENSEEEG00000023502 #18	ENSEEEG00000023500 #18	ENSEEEG00000023499	vegfc (ENSEEEG00000023489) #22
Characoidei	ANCESTRAL SPECIES	334											ENSGT00520000055589.d.a.b #10	ENSGT00390000011766	ENSGT00940000159063.f #8	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A	ENSGT00940000158602 #26
Red-bellied piranha	MODERN SPECIES	148	ENSPNAG00000005080	cntf (ENSPNAG00000013789)	ENSPNAG00000013782	ENSPNAG00000002937	CASP6 (ENSPNAG00000002925)	pla2g12a (ENSPNAG00000002908)	ENSPNAG00000002898	dnajb14 (ENSPNAG00000002897)	STOX2 (ENSPNAG00000013674) #10	tmem134 (ENSPNAG00000013649)	irf2a (ENSPNAG00000013591) #8	dctd (ENSPNAG00000013575) #16	ENSPNAG00000002794	ENSPNAG00000002786	TENM3 (ENSPNAG00000013487) #18	vegfc (ENSPNAG00000013302) #22	spcs3 (ENSPNAG00000013292) #23	asb5b (ENSPNAG00000013273)	wdr17 (ENSPNAG00000013253) #26
Mexicana tetra	MODERN SPECIES	133																vegfc (ENSAMXG00000031850) #22	ENSAMXG00000041771	spcs3 (ENSAMXG00000041796) #23	asb5b (ENSAMXG00000037624)	wdr17 (ENSAMXG00000019994) #26
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT01100000263483.E.b.a.c.b.a.b	ENSGT01100000263483.E.b.a.c.b.a.a	ENSGT00940000156393.a.b.c	ENSGT00520000058756	ENSGT00540000073610.A	ENSGT00980000198603.B	ENSGT00940000160334	ENSGT00390000001289.a	ENSGT00940000158194 #13	ENSGT00520000055589.d.a.b #10	ENSGT00390000011766	ENSGT00940000159063.f #8	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT01030000234566.e.b.a.a.b #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.i #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000154466.cc #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT00510000046787.e.a	ENSGT00740000117197
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	164	ENSGT00940000156393.a.b.d	ENSGT00540000073610.A.b	ENSGT00980000198603.B	ENSGT00390000015958.c.b	ENSGT00940000157294.c.a	ENSGT00940000160334.o	ENSGT00390000001289.a.e	ENSGT00940000162224.h	ENSGT00940000158194.i.a #13	ENSGT00520000055589.d.a.b.a #10	ENSGT00390000011766.g	ENSGT00940000159063.f.a.b #8	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a.m #18	ENSGT01030000234566.e.b.a.a.b #18	ENSGT00940000156167.b.a #22	ENSGT00390000009223.rb #23	ENSGT00940000165059.A.a	ENSGT00940000158602.i #26	ENSGT00390000006915.d.i.a #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368.c #30	ENSGT00940000154593.a.b.j #31	ENSGT00390000009873.l #32	ENSGT00940000158356.l #33	ENSGT00940000160772.h #34	ENSGT00940000154466.cc.a #36	ENSGT00940000158105.l #37	ENSGT00940000155038.qc	ENSGT00510000046787.e.a.b	ENSGT00740000117197.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	277	ENSCARG00000044869	ENSCARG00000044891	ENSCARG00000044914	cntf (ENSCARG00000044968)	ccdc149b (ENSCARG00000045020)	lgi2b (ENSCARG00000045315)	cdk2ap2 (ENSCARG00000045363)	aip (ENSCARG00000045389)	SOD3 (ENSCARG00000045423)	ing2 (ENSCARG00000045436) #13	ENSCARG00000045456 #10	irf2a (ENSCARG00000045479) #8	tmem134 (ENSCARG00000045521)	dctd (ENSCARG00000045635) #16	ENSCARG00000046010 #18	vegfc (ENSCARG00000048535) #22	ENSCARG00000048565	spcs3 (ENSCARG00000048575) #23	ENSCARG00000048603	asb5b (ENSCARG00000018865)	wdr17 (ENSCARG00000018888) #26	gpm6ab (ENSCARG00000018978) #27	glra3 (ENSCARG00000019237) #30	ENSCARG00000019464	hpgd (ENSCARG00000019468) #31	cep44 (ENSCARG00000019483) #32	fbxo8 (ENSCARG00000019500) #33	hand2 (ENSCARG00000019511) #34	hmgb2a (ENSCARG00000019517) #36	galnt7 (ENSCARG00000019556) #37	galntl6 (ENSCARG00000020263)
Goldfish	MODERN SPECIES	1015																vegfc (ENSCARG00000029962) #22	ENSCARG00000030005
Cyprininae_a	ANCESTRAL SPECIES	157	ENSGT00940000156393.a.b.d	ENSGT00540000073610.A.b	ENSGT00980000198603.B	ENSGT00390000015958.c.b	ENSGT00940000157294.c.a	ENSGT00940000160334.o	ENSGT00390000001289.a.e	ENSGT00940000162224.h	ENSGT00940000158194.i.a #13	ENSGT00520000055589.d.a.b.a #10	ENSGT00390000011766.g	ENSGT00940000159063.f.a.b #8	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a.m #18	ENSGT01030000234566.e.b.a.a.b #18	ENSGT00940000156167.b.a #22	ENSGT00390000009223.rb #23	ENSGT00940000165059.A.a	ENSGT00940000158602.i #26	ENSGT00390000006915.d.i.a #27	ENSGT01080000257376.a.b.a.a	ENSGT00940000158368.c #30	ENSGT00940000154593.a.b.j #31	ENSGT00390000009873.l #32	ENSGT00940000158356.l #33	ENSGT00940000160772.h #34	ENSGT00940000154466.cc.a #36	ENSGT00940000158105.l #37	ENSGT00940000155038.qc	ENSGT00510000046787.e.a.b	ENSGT00740000117197.a
Common carp reference	MODERN SPECIES	27	ENSCCRG00000077428	cntf (ENSCCRG00000025703)	ENSCCRG00000067650	ccdc149b (ENSCCRG00000051986)	lgi2b (ENSCCRG00000054335)	aip (ENSCCRG00000051967)	cdk2ap2 (ENSCCRG00000064036)	ing2 (ENSCCRG00000005204) #13	ENSCCRG00000081924	ENSCCRG00000051974 #10	tmem134 (ENSCCRG00000081609)	irf2a (ENSCCRG00000076801) #8	ENSCCRG00000045193 #16	ENSCCRG00000041144 #18	tenm3 (ENSCCRG00000059959) #18	vegfc (ENSCCRG00000075544) #22	spcs3 (ENSCCRG00000032030) #23	asb5b (ENSCCRG00000058956)	wdr17 (ENSCCRG00000031139) #26	gpm6ab (ENSCCRG00000024308) #27	ENSCCRG00000058509	glra3 (ENSCCRG00000049689) #30	hpgd (ENSCCRG00000061983) #31	fbxo8 (ENSCCRG00000065697) #33	cep44 (ENSCCRG00000002666) #32	hand2 (ENSCCRG00000040398) #34	hmgb2a (ENSCCRG00000079039) #36	galnt7 (ENSCCRG00000002736) #37	galntl6 (ENSCCRG00000070371)	ENSCCRG00000079193	sparcl1 (ENSCCRG00000036272)
Golden-line barbel	MODERN SPECIES	16	ENSSGRG00000036251	ENSSGRG00000036249	cntf (ENSSGRG00000036247)	ccdc149b (ENSSGRG00000036241)	lgi2b (ENSSGRG00000036237)	cdk2ap2 (ENSSGRG00000036234)	aip (ENSSGRG00000036230)	SOD3 (ENSSGRG00000036227)	ing2 (ENSSGRG00000036225) #13	STOX2 (ENSSGRG00000036224) #10	tmem134 (ENSSGRG00000036223)	irf2a (ENSSGRG00000036222) #8	dctd (ENSSGRG00000036221) #16	TENM3 (ENSSGRG00000033560) #18	ENSSGRG00000033531	vegfc (ENSSGRG00000033530) #22	spcs3 (ENSSGRG00000033525) #23	asb5b (ENSSGRG00000033524)	wdr17 (ENSSGRG00000032964) #26	gpm6ab (ENSSGRG00000032955) #27	glra3 (ENSSGRG00000032951) #30	hpgd (ENSSGRG00000032943) #31	cep44 (ENSSGRG00000032942) #32	hand2 (ENSSGRG00000032940) #34	hmgb2a (ENSSGRG00000032939) #36	galnt7 (ENSSGRG00000032938) #37	galntl6 (ENSSGRG00000032937)	sparcl1 (ENSSGRG00000032936)	scpp1 (ENSSGRG00000032934)	ENSSGRG00000032933	FAM193A (ENSSGRG00000032892)
Cyprininae	ANCESTRAL SPECIES	348																ENSGT00940000156167.b.b #22	ENSGT00390000009223.sb #23	ENSGT00940000165059.A.b	ENSGT00940000158602.j #26	ENSGT00390000006915.d.i.b #27	ENSGT00940000158368.d #30	ENSGT00940000154593.a.b.i #31	ENSGT00390000009873.k #32	ENSGT00940000158356.k #33	ENSGT00940000160772.g #34	ENSGT00940000154466.cc.b #36	ENSGT00940000158105.k #37	ENSGT00940000155038.pc	ENSGT00510000046787.e.a.a	ENSGT00740000117197.b	ENSGT00510000046908.a.b.d
Goldfish	MODERN SPECIES		arhgap10 (ENSCARG00000000068)	nr3c2 (ENSCARG00000000069)	dclk2a (ENSCARG00000000070)	FAM193A (ENSCARG00000000071)	ENSCARG00000000072	scpp1 (ENSCARG00000000073)	sparcl1 (ENSCARG00000000074)	galntl6 (ENSCARG00000000075)	galnt7 (ENSCARG00000000076) #37	hmgb2a (ENSCARG00000000077) #36	hand2 (ENSCARG00000000078) #34	tenm3 (ENSCARG00000000079) #18	ENSCARG00000000080	ENSCARG00000000081	ENSCARG00000000083	vegfc (ENSCARG00000000084) #22	spcs3 (ENSCARG00000000085) #23	asb5b (ENSCARG00000000086)	ENSCARG00000000088 #26	gpm6ab (ENSCARG00000000089) #27	glra3 (ENSCARG00000000090) #30	hpgd (ENSCARG00000000091) #31	cep44 (ENSCARG00000000092) #32	fbxo8 (ENSCARG00000000093) #33	ENSCARG00000000094	ARVCF (ENSCARG00000000095)	ENSCARG00000000097	ENSCARG00000000098	ENSCARG00000000099	ENSCARG00000000100	ENSCARG00000000101
Cyprininae_a	ANCESTRAL SPECIES	217																ENSGT00940000156167.b.b #22	ENSGT00390000009223.sb #23	ENSGT00940000165059.A.b	ENSGT00940000158602.j #26	ENSGT00390000006915.d.i.b #27	ENSGT00940000158368.d #30	ENSGT00940000154593.a.b.i #31	ENSGT00390000009873.k #32	ENSGT00940000158356.k #33	ENSGT00940000160772.g #34	ENSGT00940000154466.cc.b #36	ENSGT00940000158105.k #37	ENSGT00940000155038.pc	ENSGT00510000046787.e.a.a	ENSGT00740000117197.b	ENSGT00510000046908.a.b.d
Common carp reference	MODERN SPECIES	22	ENSCCRG00000023521	ENSCCRG00000056721	ENSCCRG00000073840	ENSCCRG00000077796	ENSCCRG00000056872	cntf (ENSCCRG00000059766)	ccdc149b (ENSCCRG00000051983)	lgi2b (ENSCCRG00000051972)	cdk2ap2 (ENSCCRG00000051969)	aip (ENSCCRG00000048177)	ENSCCRG00000051978	tmem134 (ENSCCRG00000045301)	ENSCCRG00000064446 #8	dctd (ENSCCRG00000045283) #16	ENSCCRG00000045275 #18	vegfc (ENSCCRG00000000931) #22	spcs3 (ENSCCRG00000031218) #23	asb5b (ENSCCRG00000061922)	wdr17 (ENSCCRG00000031233) #26	gpm6ab (ENSCCRG00000074115) #27	ENSCCRG00000079948	glra3 (ENSCCRG00000050387) #30	fbxo8 (ENSCCRG00000069917) #33	cep44 (ENSCCRG00000001108) #32	hand2 (ENSCCRG00000002702) #34	hmgb2a (ENSCCRG00000060705) #36	galnt7 (ENSCCRG00000040431) #37	galntl6 (ENSCCRG00000041366)	sparcl1 (ENSCCRG00000016120)	scpp1 (ENSCCRG00000076200)	ENSCCRG00000058577
Golden-line barbel	MODERN SPECIES	657																vegfc (ENSSGRG00000023986) #22	spcs3 (ENSSGRG00000023979) #23	asb5b (ENSSGRG00000023977)	wdr17 (ENSSGRG00000023923) #26	gpm6ab (ENSSGRG00000023920) #27	gpm6ab (ENSSGRG00000023915) #27	ENSSGRG00000023913	glra3 (ENSSGRG00000023912) #30	hpgd (ENSSGRG00000023911) #31	cep44 (ENSSGRG00000023909) #32	fbxo8 (ENSSGRG00000023905) #33	hand2 (ENSSGRG00000023904) #34	hmgb2a (ENSSGRG00000023901) #36	galnt7 (ENSSGRG00000023896) #37
Zebrafish	MODERN SPECIES		ENSDARG00000076585	cntf (ENSDARG00000074662)	ENSDARG00000093120	ccdc149b (ENSDARG00000020857)	lgi2b (ENSDARG00000069701)	cdk2ap2 (ENSDARG00000103145)	aip (ENSDARG00000104437)	SOD3 (ENSDARG00000079183)	ing2 (ENSDARG00000104907) #13	STOX2 (ENSDARG00000070162) #10	tmem134 (ENSDARG00000024828)	irf2a (ENSDARG00000007387) #8	dctd (ENSDARG00000036990) #16	tenm3 (ENSDARG00000005479) #18	ENSDARG00000104657	vegfc (ENSDARG00000069640) #22	spcs3 (ENSDARG00000089976) #23	asb5b (ENSDARG00000053222)	wdr17 (ENSDARG00000075098) #26	gpm6ab (ENSDARG00000004621) #27	glra3 (ENSDARG00000011066) #30	hpgd (ENSDARG00000012016) #31	cep44 (ENSDARG00000053106) #32	fbxo8 (ENSDARG00000007477) #33	hand2 (ENSDARG00000008305) #34	hmgb2a (ENSDARG00000029722) #36	ENSDARG00000113575	galnt7 (ENSDARG00000057303) #37	galntl6 (ENSDARG00000040048)	ENSDARG00000077519	ENSDARG00000076343
Euteleosteomorpha	ANCESTRAL SPECIES	247												ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT01030000234566.e.b.a.a.b #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000159851 #24	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038
Protacanthopterygii	ANCESTRAL SPECIES	41										ENSGT01090000260176	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT01100000263533.b.b.a.a.a.a.a.b	ENSGT00410000025556.a.a.a.b #15	ENSGT00940000153676.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000158602 #26	ENSGT00390000006915.d.j.a #27	ENSGT00390000006915.d.i #27	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191	ENSGT00940000154466 #36	ENSGT00940000158105 #37	ENSGT00940000155038	ENSGT01080000257488	ENSGT00940000154986.b
Salmoninae	ANCESTRAL SPECIES	460													ENSGT00410000025556.a.a.a.b.c.b.b #15	ENSGT00940000153676.a.w.a #16	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A.i.b.b	ENSGT00940000158602 #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368.f.b #30	ENSGT00390000006915.d.i #27	ENSGT00940000158368.e #30	ENSGT00940000154593.a.b.e #31	ENSGT00390000009873.d #32	ENSGT00390000009873.c.a #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000009191.a.a	ENSGT00940000154466.ec #36	ENSGT00390000009191.b
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	237													ENSGT00410000025556.a.a.a.b.c.b.b #15	ENSGT00940000153676.a.w.a.b #16	ENSGT01030000234566.e.b.a.a.a.a.b #18	ENSGT00940000156167.b.c #22	ENSGT00390000009223.ob #23	ENSGT00940000165059.A.i.b.b
Oncorhynchus	ANCESTRAL SPECIES	92														ENSGT00940000153676.a.w.a.b #16	ENSGT01030000234566.e.b.a.a.a.a.b #18	ENSGT00940000156167.b.c #22	ENSGT00390000009223.ob #23	ENSGT00940000165059.A.i.b.b.a	ENSGT00940000158602.o #26	ENSGT00390000006915.d.i #27	ENSGT00940000158368.e.b #30	ENSGT00940000154593.a.b.e.d #31	ENSGT00390000009873.c.b #32	ENSGT00940000158356.i.b #33	ENSGT00940000160772.d #34	ENSGT00390000009191.a.a.b	ENSGT00940000154466.ec #36	ENSGT00940000154466.dc.a #36	ENSGT00940000158105.p #37	ENSGT00940000155038.rc.b	ENSGT00390000016644.h
Oncorhynchus_a	ANCESTRAL SPECIES	88															ENSGT01030000234566.e.b.a.a.a.a.b #18	ENSGT00940000156167.b.c #22	ENSGT00390000009223.ob #23	ENSGT00940000165059.A.i.b.b.a	ENSGT00940000158602.o #26	ENSGT00390000006915.d.i #27	ENSGT00940000158368.e.b #30	ENSGT00940000154593.a.b.e.d #31	ENSGT00390000009873.d #32	ENSGT00940000158356.j #33	ENSGT00390000009873.c.b #32	ENSGT00940000158356.i.b #33	ENSGT00940000160772.d #34	ENSGT00390000009191.a.b	ENSGT00940000154466.dc.b.b #36	ENSGT00940000158105.p #37	ENSGT00940000155038.sc.a
Chinook salmon	MODERN SPECIES	2918									ENSOTSG00005030612	ENSOTSG00005030514	ENSOTSG00005030432	ENSOTSG00005030430	ENSOTSG00005030427	zhx3b (ENSOTSG00005030426)	mafba (ENSOTSG00005030423)	vegfc (ENSOTSG00005030421) #22	spcs3 (ENSOTSG00005030420) #23	ENSOTSG00005030419	asb5b (ENSOTSG00005030415)	wdr17 (ENSOTSG00005026844) #26
Coho salmon	MODERN SPECIES	3	ENSOKIG00005020057	ENSOKIG00005020098	ENSOKIG00005020159	ENSOKIG00005020167	ENSOKIG00005020190	ENSOKIG00005020209	ENSOKIG00005020213	ENSOKIG00005020217	ENSOKIG00005020223	ENSOKIG00005020235	ENSOKIG00005020241	ENSOKIG00005020253	WWC2 (ENSOKIG00005020298) #15	dctd (ENSOKIG00005020428) #16	TENM3 (ENSOKIG00005020509) #18	vegfc (ENSOKIG00005021044) #22	spcs3 (ENSOKIG00005021064) #23	asb5b (ENSOKIG00005011907)	wdr17 (ENSOKIG00005011968) #26	GPM6A (ENSOKIG00005012161) #27	ENSOKIG00005012205	glra3 (ENSOKIG00005012250) #30	hpgd (ENSOKIG00005012957) #31	cep44 (ENSOKIG00005012964) #32	fbxo8 (ENSOKIG00005012974) #33	hand2 (ENSOKIG00005013007) #34	SCRG1 (ENSOKIG00005012997)	hmgb2a (ENSOKIG00005013022) #36	galnt7 (ENSOKIG00005013068) #37	galntl6 (ENSOKIG00005013529)	tmem154 (ENSOKIG00005013868)
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000066958	ENSOMYG00000003979	ENSOMYG00000075547	ENSOMYG00000004064	ENSOMYG00000005507	ENSOMYG00000004111	ENSOMYG00000004168	ENSOMYG00000004199	ENSOMYG00000051821	ENSOMYG00000004219	WWC2 (ENSOMYG00000004251) #15	ENSOMYG00000004381 #16	TENM3 (ENSOMYG00000005360) #18	ENSOMYG00000055329	ENSOMYG00000051477	vegfc (ENSOMYG00000006060) #22	ENSOMYG00000061786	spcs3 (ENSOMYG00000006116) #23	asb5b (ENSOMYG00000006164)	ENSOMYG00000056256	wdr17 (ENSOMYG00000006843) #26	GPM6A (ENSOMYG00000007055) #27	glra3 (ENSOMYG00000007086) #30	ENSOMYG00000052045	hpgd (ENSOMYG00000007107) #31	cep44 (ENSOMYG00000007156) #32	fbxo8 (ENSOMYG00000007223) #33	hand2 (ENSOMYG00000007252) #34	SCRG1 (ENSOMYG00000007352)	hmgb2a (ENSOMYG00000007312) #36	galnt7 (ENSOMYG00000007549) #37
Salmo	ANCESTRAL SPECIES	86										ENSGT01090000260176.b.a.a	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.a	ENSGT01030000234576.D.a.b.b.f.b.a	ENSGT00410000025556.a.a.a.b.c.b.b #15	ENSGT00940000153676.a.w.a.b #16	ENSGT01030000234566.e.b.a.a.a.a.b #18	ENSGT00940000156167.b.c #22	ENSGT00390000009223.ob #23	ENSGT00940000165059.A.i.b.b	ENSGT00940000158602.n #26	ENSGT00390000006915.d.j.a.f #27	ENSGT00940000158368.f.a #30	ENSGT00940000154593.a.b.e.a #31	ENSGT00390000009873.d #32	ENSGT00940000158356.h #33	ENSGT00940000160772.c #34	ENSGT00390000009191.b	ENSGT00390000009191.a.a	ENSGT00940000154466.dc.b #36	ENSGT00940000158105.q.a #37	ENSGT00940000155038.sc.a	ENSGT01080000257488.c
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000093224	ENSSSAG00000084067	ENSSSAG00000090686	ENSSSAG00000085642	ENSSSAG00000098667	ENSSSAG00000101561	ENSSSAG00000104305	ENSSSAG00000070295	ENSSSAG00000086321	ENSSSAG00000063556	ENSSSAG00000085391	WWC2 (ENSSSAG00000070262) #15	DCTD (ENSSSAG00000070252) #16	TENM3 (ENSSSAG00000056252) #18	ENSSSAG00000109209	vegfc (ENSSSAG00000055981) #22	SPCS3 (ENSSSAG00000055976) #23	asb5b (ENSSSAG00000055967)	wdr17 (ENSSSAG00000055196) #26	GPM6A (ENSSSAG00000054788) #27	glra3 (ENSSSAG00000054688) #30	PGDH (ENSSSAG00000054647) #31	ENSSSAG00000082929	ENSSSAG00000086498	cep44 (ENSSSAG00000054633) #32	fbxo8 (ENSSSAG00000090818) #33	hand2 (ENSSSAG00000087050) #34	SCRG1 (ENSSSAG00000108079)	hmgb2a (ENSSSAG00000054548) #36	galnt7 (ENSSSAG00000069362) #37	galntl6 (ENSSSAG00000069430)
River trout	MODERN SPECIES	33	ENSSTUG00000013891	ENSSTUG00000013880	ENSSTUG00000013868	ENSSTUG00000013866	ENSSTUG00000013863	ENSSTUG00000013854	ENSSTUG00000013849	ENSSTUG00000013837	ENSSTUG00000013835	ENSSTUG00000013830	WWC2 (ENSSTUG00000013773) #15	dctd (ENSSTUG00000013750) #16	TENM3 (ENSSTUG00000012215) #18	ENSSTUG00000012149	ENSSTUG00000012137	vegfc (ENSSTUG00000012123) #22	spcs3 (ENSSTUG00000012094) #23	ENSSTUG00000012089	asb5b (ENSSTUG00000012082)	wdr17 (ENSSTUG00000010168) #26	GPM6A (ENSSTUG00000009919) #27	glra3 (ENSSTUG00000009347) #30	ENSSTUG00000009328	hpgd (ENSSTUG00000009308) #31	cep44 (ENSSTUG00000009293) #32	fbxo8 (ENSSTUG00000009240) #33	hand2 (ENSSTUG00000009220) #34	SCRG1 (ENSSTUG00000009216)	hmgb2a (ENSSTUG00000009209) #36	galnt7 (ENSSTUG00000008745) #37	galntl6 (ENSSTUG00000008558)
Salmoninae_a	ANCESTRAL SPECIES	84	ENSGT00940000153662.A.h.b	ENSGT00990000203830.b	ENSGT00510000052596.b.a	ENSGT00510000052942.c.a	ENSGT00950000183012.A.b.a	ENSGT00940000158942.a.c	ENSGT00390000002721.d	ENSGT01030000234532.B.e.a.a.b.e	ENSGT00390000004237.q.a.b.b	ENSGT01100000264182	ENSGT00940000164807.E.a.a.a.a.a.b.a	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a #15	ENSGT00940000153676.a.w.b #16	ENSGT01030000234566.e.b.a.a.a.a.a #18	ENSGT00940000156167.b.d #22	ENSGT00390000009223.nb #23	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602 #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368.f.b #30	ENSGT00390000006915.d.i #27	ENSGT00940000158368.e #30	ENSGT00940000154593.a.b.e #31	ENSGT00390000009873.c.a #32	ENSGT00940000158356 #33	ENSGT00940000160772.c #34	ENSGT00390000009191.a.a	ENSGT00940000154466.ec #36	ENSGT00390000009191.b	ENSGT00940000154466.dc.b #36
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000153246.a.a.b.c	ENSGT00940000155244.d.e.a.d.c	ENSGT00940000154658.b.i.b.c.b	ENSGT01100000263491.a.b.a.a.a.b.b.b.a.b.b.a.b.a.b.a.a	ENSGT01100000264182	ENSGT00940000164807.E.a.a.a.a.a.b.a	ENSGT01100000263505.b.b.a.a.a.a.b.b.b.b.b.a.b.b.a.b.a	ENSGT01040000240808	ENSGT00390000002721.d	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a.a #15	ENSGT00410000025556.a.a.a.b.c.b.a.a #15	ENSGT00940000153676.a.w.b #16	ENSGT01030000234566.e.b.a.a.a.a.a.b #18	ENSGT01030000234566.e.b.a.a.a.a.a.a #18	ENSGT00940000156167.b.d #22	ENSGT00390000009223.nb #23	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.p #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368.e.a #30	ENSGT00940000154593.a.b.e.c #31	ENSGT00390000009873.c.a #32	ENSGT00940000158356.i.a #33	ENSGT00940000160772.c #34	ENSGT00390000009191.a.a.a	ENSGT00940000154466.dc.b.a #36	ENSGT00940000158105.o #37	ENSGT00940000155038.sc.b	ENSGT01080000257488.e	ENSGT00940000177316.g
Oncorhynchus_a	ANCESTRAL SPECIES	104																ENSGT00940000156167.b.d #22	ENSGT00390000009223.nb #23	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.p #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368.e.a #30	ENSGT00940000154593.a.b.e.c #31	ENSGT00390000009873.c.a #32	ENSGT00940000158356.i.a #33	ENSGT00940000160772.c #34	ENSGT00390000009191.a.a.a	ENSGT00940000154466.dc.b.a.a #36	ENSGT00940000158105.o #37	ENSGT00940000155038.sc.b	ENSGT01080000257488.e	ENSGT00940000177316.g
Chinook salmon	MODERN SPECIES	68																vegfc (ENSOTSG00005034248) #22	spcs3 (ENSOTSG00005034242) #23	asb5b (ENSOTSG00005034238)	wdr17 (ENSOTSG00005034019) #26
Coho salmon	MODERN SPECIES	27	ENSOKIG00005010795	ENSOKIG00005010792	ENSOKIG00005010789	ENSOKIG00005010787	ENSOKIG00005010767	ENSOKIG00005010748	ENSOKIG00005010738	ENSOKIG00005010731	saraf (ENSOKIG00005010717)	WWC2 (ENSOKIG00005010645) #15	ENSOKIG00005010634	dctd (ENSOKIG00005010629) #16	TENM3 (ENSOKIG00005010263) #18	ENSOKIG00005010193	ENSOKIG00005010192	vegfc (ENSOKIG00005010178) #22	spcs3 (ENSOKIG00005010167) #23	asb5b (ENSOKIG00005010139)	wdr17 (ENSOKIG00005008293) #26	GPM6A (ENSOKIG00005008116) #27	ENSOKIG00005008099	ENSOKIG00005008095	glra3 (ENSOKIG00005007473) #30	hpgd (ENSOKIG00005007435) #31	cep44 (ENSOKIG00005007428) #32	fbxo8 (ENSOKIG00005007411) #33	hand2 (ENSOKIG00005007398) #34	SCRG1 (ENSOKIG00005007387)	hmgb2a (ENSOKIG00005007373) #36	galnt7 (ENSOKIG00005006633) #37	galntl6 (ENSOKIG00005006403)
Rainbow trout	MODERN SPECIES	10	ENSOMYG00000005632	ENSOMYG00000005841	ENSOMYG00000070022	ENSOMYG00000005716	ENSOMYG00000005726	ENSOMYG00000061762	ENSOMYG00000005565	ENSOMYG00000005417	ENSOMYG00000060158	ENSOMYG00000005411	ENSOMYG00000020629	ENSOMYG00000020621	WWC2 (ENSOMYG00000020577) #15	dctd (ENSOMYG00000073078) #16	TENM3 (ENSOMYG00000019844) #18	vegfc (ENSOMYG00000019522) #22	ENSOMYG00000065035	spcs3 (ENSOMYG00000019520) #23	asb5b (ENSOMYG00000019512)	wdr17 (ENSOMYG00000017900) #26	ENSOMYG00000067119	gpm6ab (ENSOMYG00000017609) #27	glra3 (ENSOMYG00000017336) #30	hpgd (ENSOMYG00000017310) #31	cep44 (ENSOMYG00000017279) #32	fbxo8 (ENSOMYG00000017247) #33	ENSOMYG00000048016	hand2 (ENSOMYG00000017232) #34	SCRG1 (ENSOMYG00000017225)	hmgb2a (ENSOMYG00000017209) #36	galnt7 (ENSOMYG00000016502) #37
Salmo	ANCESTRAL SPECIES	116										ENSGT01030000234576.D.a.b.b.f.a	ENSGT00390000002721.d.d	ENSGT00390000013419	ENSGT00410000025556.a.a.a.b.c.a.a #15	ENSGT00940000153676.a.w.b #16	ENSGT01030000234566.e.b.a.a.a.a.a #18	ENSGT00940000156167.b.d #22	ENSGT00390000009223.nb.a #23	ENSGT00940000165059.A.i.b.a	ENSGT00940000158602.m #26	ENSGT00390000006915.d.j.a.e #27	ENSGT00940000158368.f.b #30	ENSGT00940000154593.a.b.e.b #31	ENSGT00390000009873.c.a #32	ENSGT00940000158356.g #33	ENSGT00940000160772.d #34	ENSGT00390000009191.a.b	ENSGT00940000154466.dc.a #36	ENSGT00940000158105.q.b #37	ENSGT00940000155038.sc.b	ENSGT01080000257488.d	ENSGT00940000154986.b.d
River trout	MODERN SPECIES	2	ENSSTUG00000026639	ENSSTUG00000026642	ENSSTUG00000026647	ENSSTUG00000026656	ENSSTUG00000026732	ENSSTUG00000026738	ENSSTUG00000026744	ENSSTUG00000026748	ENSSTUG00000026754	xpa (ENSSTUG00000026759)	saraf (ENSSTUG00000026768)	WWC2 (ENSSTUG00000026786) #15	dctd (ENSSTUG00000026843) #16	ENSSTUG00000026874	TENM3 (ENSSTUG00000026979) #18	vegfc (ENSSTUG00000031965) #22	spcs3 (ENSSTUG00000031980) #23	asb5b (ENSSTUG00000031996)	wdr17 (ENSSTUG00000032125) #26	GPM6A (ENSSTUG00000034275) #27	glra3 (ENSSTUG00000034335) #30	hpgd (ENSSTUG00000034473) #31	cep44 (ENSSTUG00000034489) #32	fbxo8 (ENSSTUG00000034503) #33	hand2 (ENSSTUG00000034578) #34	SCRG1 (ENSSTUG00000034605)	hmgb2a (ENSSTUG00000034628) #36	galnt7 (ENSSTUG00000034671) #37	galntl6 (ENSSTUG00000034992)	ENSSTUG00000035124	tmem154 (ENSSTUG00000035130)
Atlantic salmon	MODERN SPECIES	27	ENSSSAG00000106134	ENSSSAG00000115667	ENSSSAG00000117267	ZO20 (ENSSSAG00000063544)	ENSSSAG00000039802	ENSSSAG00000091541	ENSSSAG00000096711	ENSSSAG00000095452	ENSSSAG00000102489	ENSSSAG00000063566	saraf (ENSSSAG00000063573)	WWC2 (ENSSSAG00000063590) #15	ENSSSAG00000037804 #16	ENSSSAG00000097282	TENM3 (ENSSSAG00000039668) #18	vegfc (ENSSSAG00000098022) #22	spcs3 (ENSSSAG00000063898) #23	asb5b (ENSSSAG00000063906)	wdr17 (ENSSSAG00000063973) #26	ENSSSAG00000062493	GPM6A (ENSSSAG00000068042) #27	glra3 (ENSSSAG00000068071) #30	PGDH (ENSSSAG00000069326) #31	cep44 (ENSSSAG00000069330) #32	fbxo8 (ENSSSAG00000115162) #33	hand2 (ENSSSAG00000106585) #34	SCRG1 (ENSSSAG00000054575)	hmgb2a (ENSSSAG00000109524) #36	galnt7 (ENSSSAG00000054259) #37	galntl6 (ENSSSAG00000053665)	tmem154 (ENSSSAG00000053643)
Huchen	DUPLICATION
Huchen	MODERN SPECIES	3574																vegfc (ENSHHUG00000040718) #22
Huchen	MODERN SPECIES	1280															ENSHHUG00000041206	vegfc (ENSHHUG00000041211) #22	spcs3 (ENSHHUG00000041221) #23	asb5b (ENSHHUG00000041225)	wdr17 (ENSHHUG00000041232) #26	GPM6A (ENSHHUG00000041278) #27
Northern pike	MODERN SPECIES	24	ENSELUG00000030401	ENSELUG00000000827	ENSELUG00000019425	ENSELUG00000030937	b4galt1l (ENSELUG00000019368)	abca1a (ENSELUG00000019335)	ENSELUG00000019185	ENSELUG00000032305	ENSELUG00000019144	xpa (ENSELUG00000019135)	ENSELUG00000001458	WWC2 (ENSELUG00000019077) #15	dctd (ENSELUG00000018934) #16	ENSELUG00000016425	TENM3 (ENSELUG00000018852) #18	vegfc (ENSELUG00000018700) #22	spcs3 (ENSELUG00000030400) #23	asb5b (ENSELUG00000018654)	wdr17 (ENSELUG00000018578) #26	GPM6A (ENSELUG00000018445) #27	ATP1A1 (ENSELUG00000018410)	ENSELUG00000018338	ENSELUG00000034594	ENSELUG00000031566	ENSELUG00000025867	ENSELUG00000031385	ENSELUG00000028834	ENSELUG00000033774	ENSELUG00000033827	ENSELUG00000012354	ENSELUG00000026853
Acanthomorphata	ANCESTRAL SPECIES	202											ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT01030000234566.e.b.a.a.b #18	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000013419	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000158105 #37	ENSGT00390000002918.a.a	ENSGT00940000156950.b	ENSGT00940000156344.a
Euacanthomorphacea	ANCESTRAL SPECIES	97										ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT00940000166667	ENSGT00940000158602 #26	ENSGT01030000234566.e.b.a.a.b #18	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00940000159851 #24	ENSGT00390000009223 #23
Percomorphaceae	ANCESTRAL SPECIES	75	ENSGT00510000052942	ENSGT00510000052596.b	ENSGT00990000203830	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00940000159851 #24	ENSGT00390000009223 #23
Tiger tail seahorse	MODERN SPECIES	282			p2rx3b (ENSHCOG00000001522)	pold4 (ENSHCOG00000001529)	zdhhc5a (ENSHCOG00000001541)	ENSHCOG00000001563	ENSHCOG00000001576	ENSHCOG00000001581	ddt (ENSHCOG00000001586)	vps37c (ENSHCOG00000001594)	ENSHCOG00000001602	galnt7 (ENSHCOG00000001612) #37	kdm2aa (ENSHCOG00000001626)	spcs3 (ENSHCOG00000001636) #23	stx3a (ENSHCOG00000001649)	vegfc (ENSHCOG00000001658) #22	ENSHCOG00000001675	ENSHCOG00000001683 ##18	ENSHCOG00000001689	ENSHCOG00000001711 #18	dctd (ENSHCOG00000001730) #16	ENSHCOG00000001738 #32	fbxo8 (ENSHCOG00000001746) #33	hand2 (ENSHCOG00000001752) #34	GPM6A (ENSHCOG00000001758) #27	ENSHCOG00000001764	GLRA3 (ENSHCOG00000001778) #30	wdr17 (ENSHCOG00000001805) #26	hmgb2a (ENSHCOG00000001815) #36	pmm2 (ENSHCOG00000001822)	mtmr7b (ENSHCOG00000001833)
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00940000159851 #24	ENSGT00390000009223 #23	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00990000203830	ENSGT00510000052596.b	ENSGT00510000052942
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00940000159851 #24	ENSGT00390000009223 #23	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00990000203830	ENSGT00510000052596.b	ENSGT00510000052942	ENSGT00610000087490
Atherinomorphae	ANCESTRAL SPECIES	38	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00940000159851 #24	ENSGT00390000009223 #23	ENSGT00940000155484.b	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00510000052942	ENSGT00610000087490	ENSGT00950000183012.A.b	ENSGT01100000263491.a.b.a.a.a.b.a
Cyprinodontiformes	ANCESTRAL SPECIES	38	ENSGT00390000011698.c.a.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00940000159851 #24	ENSGT00390000009223 #23	ENSGT00940000155484.b
Aplocheiloidei	ANCESTRAL SPECIES	384															ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT00390000009873 #32
Mangrove rivulus	MODERN SPECIES	507																vegfc (ENSKMAG00000011113) #22	ENSKMAG00000011123
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015010608	ENSNFUG00015010577	ENSNFUG00015010545	ENSNFUG00015010536	ENSNFUG00015010308	ubn2a (ENSNFUG00015010270)	ttc26 (ENSNFUG00015009736)	ENSNFUG00015009658	ENSNFUG00015009653	ENSNFUG00015009632	slc25a38b (ENSNFUG00015009527)	myh9a (ENSNFUG00015009053)	map2k7 (ENSNFUG00015023878)	ENSNFUG00015023858	ENSNFUG00015023837	vegfc (ENSNFUG00015023829) #22	ENSNFUG00015023826 ##18	ENSNFUG00015023825	ENSNFUG00015023717	dctd (ENSNFUG00015023704) #16	ENSNFUG00015023701	ENSNFUG00015023698 #32	FBXO8 (ENSNFUG00015023694) #33	KCNH1 (ENSNFUG00015023684)	ENSNFUG00015023678	rcor3 (ENSNFUG00015023643)	TAF5L (ENSNFUG00015023630)	capn9 (ENSNFUG00015023606)	COMMD1 (ENSNFUG00015023593)	ENSNFUG00015023583	ENSNFUG00015023575
Cyprinodontoidei	ANCESTRAL SPECIES	58		ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00940000159851 #24	ENSGT00390000009223 #23
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000154196.b	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a.e #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000159851 #24	ENSGT00390000009223 #23	ENSGT00940000155484.b
Poecilia	ANCESTRAL SPECIES	64	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT01030000234893.b.a.a.b.b.a	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a.e #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000159851 #24	ENSGT00390000009223 #23	ENSGT00940000155484.b
Guppy	MODERN SPECIES	439	ENSPREG00000022688	ENSPREG00000022665	slc43a1b (ENSPREG00000022651)	zdhhc5a (ENSPREG00000022645)	tmx2b (ENSPREG00000022631)	ENSPREG00000022617	ENSPREG00000022613	ENSPREG00000022610	ENSPREG00000022603	ENSPREG00000022596	ENSPREG00000022591	ENSPREG00000022585	ENSPREG00000022575	ENSPREG00000022558	ENSPREG00000022551	vegfc (ENSPREG00000022543) #22	TENM3 (ENSPREG00000022337) #18	dctd (ENSPREG00000022221) #16	fbxo8 (ENSPREG00000022197) #33	hand2 (ENSPREG00000022192) #34	ENSPREG00000022169	ENSPREG00000022154	ndufs8a (ENSPREG00000022139)	glrba (ENSPREG00000022117)	GRIA2 (ENSPREG00000022050)	ENSPREG00000022021	galnt7 (ENSPREG00000022007) #37	ENSPREG00000021996	spcs3 (ENSPREG00000021991) #23	kdm2aa (ENSPREG00000021962)	stx3a (ENSPREG00000021940)
NAME_6	ANCESTRAL SPECIES	78	ENSGT00940000160591.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.cb.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT01030000234893.b.a.a.b.b.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a.e #18	ENSGT00940000153676.a #16	ENSGT00390000009873.g #32	ENSGT00390000009873.h #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01050000244806.b.b	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000159851 #24	ENSGT00390000009223 #23
Amazon molly	MODERN SPECIES	414	irf2bp2b (ENSPFOG00000011387)	p2rx3b (ENSPFOG00000011264)	pold4 (ENSPFOG00000011260)	ENSPFOG00000010995	slc43a1b (ENSPFOG00000010986)	zdhhc5a (ENSPFOG00000010983)	tmx2b (ENSPFOG00000010938)	ENSPFOG00000010874	ENSPFOG00000010867	ENSPFOG00000010818	ENSPFOG00000010787	ENSPFOG00000010740	ENSPFOG00000010729	ENSPFOG00000022568	ENSPFOG00000010705	vegfc (ENSPFOG00000010660) #22	TENM3 (ENSPFOG00000009694) #18	ENSPFOG00000021807 #32	ENSPFOG00000023938 #18	dctd (ENSPFOG00000010583) #16	ENSPFOG00000009625 #32	fbxo8 (ENSPFOG00000009550) #33	hand2 (ENSPFOG00000009546) #34	ENSPFOG00000009530	ndufs8a (ENSPFOG00000009410)	glrba (ENSPFOG00000009313)	GRIA2 (ENSPFOG00000008549)
Platyfish	MODERN SPECIES	19	rcor3 (ENSXMAG00000013784)	irf2bp2b (ENSXMAG00000026835)	p2rx3b (ENSXMAG00000013768)	pold4 (ENSXMAG00000013767)	ENSXMAG00000013750	slc43a1b (ENSXMAG00000013740)	zdhhc5a (ENSXMAG00000013732)	tmx2b (ENSXMAG00000013723)	ENSXMAG00000013714	ENSXMAG00000021497	ENSXMAG00000023872	ENSXMAG00000013701	ENSXMAG00000013687	ENSXMAG00000028168	ENSXMAG00000011494	vegfc (ENSXMAG00000011488) #22	TENM3 (ENSXMAG00000015765) #18	ENSXMAG00000021802	dctd (ENSXMAG00000015859) #16	cep44 (ENSXMAG00000017542) #32	fbxo8 (ENSXMAG00000017544) #33	hand2 (ENSXMAG00000023432) #34	si:dkey-102c8.3 (ENSXMAG00000015872)	ENSXMAG00000015875	ndufs8a (ENSXMAG00000015877)	glrba (ENSXMAG00000015884)	GRIA2 (ENSXMAG00000015901)	saraf (ENSXMAG00000015951)	galnt7 (ENSXMAG00000015957) #37	ASB5 (ENSXMAG00000015975) #24	spcs3 (ENSXMAG00000015996) #23
NAME_4	ANCESTRAL SPECIES	397											ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22
Mummichog	MODERN SPECIES	574												ENSFHEG00000015936	ENSFHEG00000015895	ENSFHEG00000015835	ENSFHEG00000015808	vegfc (ENSFHEG00000000387) #22	ENSFHEG00000015797
Sheepshead minnow	MODERN SPECIES	1634																vegfc (ENSCVAG00000003154) #22
Oryzias	ANCESTRAL SPECIES	15	ENSGT00860000134050	ENSGT00980000198902	ENSGT00940000156184.a	ENSGT00390000000909	ENSGT00940000157732.f.a	ENSGT00940000156696.B	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT00940000176858	ENSGT00940000155062.a	ENSGT00940000157122.b.b	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00940000157622.a.a	ENSGT00940000163186	ENSGT00940000177894	ENSGT00940000167646	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00940000157090.h	ENSGT00950000183174.B.a.e	ENSGT00870000137155	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00950000182915.a.a.b	ENSGT00950000183130.A
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00940000156184.a	ENSGT00390000000909	ENSGT00940000157732.f.a	ENSGT00940000156696.B	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT00940000176858	ENSGT00940000155062.a	ENSGT00940000157122.b.b	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00940000157622.a.a	ENSGT00940000163186	ENSGT00940000177894	ENSGT00940000167646	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00940000157090.h	ENSGT00950000183174.B.a.e	ENSGT00870000137155	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00950000182915.a.a.b	ENSGT00950000183130.A
Indian medaka	MODERN SPECIES	21	dtd1 (ENSOMEG00000020384)	ENSOMEG00000020399	stn1 (ENSOMEG00000020439)	slkb (ENSOMEG00000020542)	SH3PXD2A (ENSOMEG00000020700)	neurl1aa (ENSOMEG00000020787)	ENSOMEG00000020906	ENSOMEG00000021072	ENSOMEG00000021107	RPS6KB2 (ENSOMEG00000021168)	ENSOMEG00000021212	ENSOMEG00000021220	ENSOMEG00000021246	ENSOMEG00000000562	ENSOMEG00000021322	vegfc (ENSOMEG00000021355) #22	ENSOMEG00000021371	TENM3 (ENSOMEG00000021448) #18	dctd (ENSOMEG00000021534) #16	slc43a3a (ENSOMEG00000021570)	ENSOMEG00000021588	ENSOMEG00000021602	NOCT (ENSOMEG00000021625)	elf2b (ENSOMEG00000021691)	ENSOMEG00000021726	naa15b (ENSOMEG00000021786)	ENSOMEG00000021806	ENSOMEG00000021819	scoca (ENSOMEG00000000577)	clgn (ENSOMEG00000021923)	exosc9 (ENSOMEG00000021965)
Javanese ricefish	MODERN SPECIES		dtd1 (ENSOJAG00000014567)	slkb (ENSOJAG00000014646)	stn1 (ENSOJAG00000016081)	SH3PXD2A (ENSOJAG00000016104)	neurl1aa (ENSOJAG00000016314)	ENSOJAG00000016384	ENSOJAG00000016780	ENSOJAG00000016816	ENSOJAG00000017045	RPS6KB2 (ENSOJAG00000017187)	ENSOJAG00000018416	ENSOJAG00000018743	ENSOJAG00000018773	ENSOJAG00000018795	ENSOJAG00000018807	vegfc (ENSOJAG00000018818) #22	TENM3 (ENSOJAG00000019297) #18	atf1 (ENSOJAG00000022043)	dctd (ENSOJAG00000022053) #16	ENSOJAG00000022066	ENSOJAG00000022075	NOCT (ENSOJAG00000022083)	elf2b (ENSOJAG00000022092)	RAB33B (ENSOJAG00000022099)	naa15b (ENSOJAG00000022103)	ENSOJAG00000022138	ENSOJAG00000022141	ENSOJAG00000022145	scoca (ENSOJAG00000003640)	clgn (ENSOJAG00000004056)	exosc9 (ENSOJAG00000006174)
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00860000134050	ENSGT00980000198902	ENSGT00940000156184.a	ENSGT00390000000909	ENSGT00940000157732.f.a	ENSGT00940000156696.B	ENSGT01030000234563.b.a.b.a.b.a.d	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT00940000176858	ENSGT00940000155062.a	ENSGT00940000157122.b.b	ENSGT01040000240400.c.a.b.a.b.a.b	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00940000157622.a.a	ENSGT00940000163186	ENSGT00940000155249.g	ENSGT00940000154953.b	ENSGT00940000157090.h	ENSGT00950000183174.B.a.e	ENSGT00870000137155	ENSGT00950000183201.b.a.b	ENSGT00390000008828.fb.b	ENSGT00950000182915.a.a.b	ENSGT00950000183130.A	ENSGT00940000163234.a.b.h.a.b	ENSGT00950000183035.b.f
Japanese Medaka HdrR	MODERN SPECIES		ENSORLG00000026837	ENSORLG00000026615	ENSORLG00000028680	ENSORLG00000029043	ENSORLG00000030303	ENSORLG00000026236	ENSORLG00000027842	RPS6KB2 (ENSORLG00000002272)	ENSORLG00000023252	ENSORLG00000002249	ENSORLG00000028979	ENSORLG00000002209	ENSORLG00000022778	ENSORLG00000002191	ENSORLG00000029382	vegfc (ENSORLG00000002180) #22	ENSORLG00000002165 #18	dctd (ENSORLG00000002127) #16	slc43a3a (ENSORLG00000002116)	ENSORLG00000023189	NOCT (ENSORLG00000002100)	elf2b (ENSORLG00000002091)	ENSORLG00000002071	naa15b (ENSORLG00000002063)	ENSORLG00000025469	ENSORLG00000028392	scoca (ENSORLG00000002015)	clgn (ENSORLG00000002011)	exosc9 (ENSORLG00000001989)	slc47a2.2 (ENSORLG00000001967)	ENSORLG00000025638
Chinese medaka	MODERN SPECIES	218									ENSOSIG00000018609	RPS6KB2 (ENSOSIG00000016911)	ENSOSIG00000016843	ENSOSIG00000016841	ENSOSIG00000016840	ENSOSIG00000016837	ENSOSIG00000016832	vegfc (ENSOSIG00000016830) #22	ENSOSIG00000016828	TENM3 (ENSOSIG00000007174) #18	dctd (ENSOSIG00000007102) #16	slc43a3a (ENSOSIG00000007099)	ENSOSIG00000007098	NOCT (ENSOSIG00000007097)	elf2b (ENSOSIG00000007093)	RAB33B (ENSOSIG00000007092)	naa15b (ENSOSIG00000005351)	ENSOSIG00000005335	scoca (ENSOSIG00000005334)	ENSOSIG00000004632	exosc9 (ENSOSIG00000004619)	slc47a2.1 (ENSOSIG00000004605)	ENSOSIG00000004600
Ovalentaria_B	ANCESTRAL SPECIES	54	ENSGT00940000166931	ENSGT00940000161345	ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT00940000158942.a	ENSGT00950000183012.A.b	ENSGT00510000052942	ENSGT00510000052596.b	ENSGT00990000203830	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223 #23	ENSGT00940000165522.b	ENSGT00940000158105 #37	ENSGT00390000013419	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.b #18	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b
Cichlidae	ANCESTRAL SPECIES	198															ENSGT00390000004697	ENSGT00940000156167.b #22
Pseudocrenilabrinae	ANCESTRAL SPECIES	227															ENSGT00390000004697	ENSGT00940000156167.b #22
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	225															ENSGT00390000004697	ENSGT00940000156167.b #22
Haplochromini	ANCESTRAL SPECIES	225															ENSGT00390000004697	ENSGT00940000156167.b #22
Burton s mouthbrooder	MODERN SPECIES	883															ENSHBUG00000002404	vegfc (ENSHBUG00000002394) #22
Haplochromini_A	ANCESTRAL SPECIES	228															ENSGT00390000004697	ENSGT00940000156167.b #22
P. nyererei	MODERN SPECIES	653																vegfc (ENSPNYG00000024258) #22
Haplochromini_B	ANCESTRAL SPECIES	47	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r	ENSGT00530000063498.A	ENSGT00400000025126	ENSGT00940000155557.jc.b	ENSGT00390000005535	ENSGT00390000018879	ENSGT00940000155246	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314.b	ENSGT00940000159590	ENSGT00940000164531	ENSGT00390000014512.d	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT00940000154348.c.b.b.a.b.d.b.h.a.a.a.b.a.a	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000174164	ENSGT00940000168028	ENSGT00940000165127.a	ENSGT00390000008711.h	ENSGT00940000178757	ENSGT00940000157807.g.b	ENSGT00390000003751.a	ENSGT00940000156001.c	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005005463	WIPF2 (ENSMZEG00005005474)	ENSMZEG00005005496	zgc:77929 (ENSMZEG00005005509)	npepps (ENSMZEG00005005520)	mrpl45 (ENSMZEG00005005556)	ENSMZEG00005005586	socs7 (ENSMZEG00005005686)	sp2 (ENSMZEG00005005694)	ENSMZEG00005005711	ENSMZEG00005005733	ENSMZEG00005005753	mrpl4 (ENSMZEG00005005809)	ENSMZEG00005005830	ENSMZEG00005005836	vegfc (ENSMZEG00005005849) #22	ENSMZEG00005005898	ENSMZEG00005005910	ENSMZEG00005005925 #18	ENSMZEG00005005950 #18	ENSMZEG00005005967	RAC2 (ENSMZEG00005005981)	ENSMZEG00005005992	ENSMZEG00005006001	ENSMZEG00005006017	CUTA (ENSMZEG00005006039)	CACNG2 (ENSMZEG00005006049)	IFT27 (ENSMZEG00005006059)	SYNGR1 (ENSMZEG00005006066)	TAB1 (ENSMZEG00005006074)	MGAT3 (ENSMZEG00005006095)
Eastern happy	MODERN SPECIES	18	cdc6 (ENSACLG00000016546)	ENSACLG00000016574	WIPF2 (ENSACLG00000016646)	ENSACLG00000016665	zgc:77929 (ENSACLG00000016671)	npepps (ENSACLG00000016681)	mrpl45 (ENSACLG00000016765)	ENSACLG00000016799	socs7 (ENSACLG00000016817)	sp2 (ENSACLG00000016868)	ENSACLG00000016925	ENSACLG00000017009	mrpl4 (ENSACLG00000017038)	ENSACLG00000017092	ENSACLG00000017133	vegfc (ENSACLG00000017154) #22	ENSACLG00000017161	ENSACLG00000017165	ENSACLG00000017209	TENM3 (ENSACLG00000017323) #18	dctd (ENSACLG00000017470) #16	fbxo8 (ENSACLG00000017521) #33	hand2 (ENSACLG00000017592) #34	ENSACLG00000017600	ENSACLG00000017613	ENSACLG00000017678	ENSACLG00000017800	ENSACLG00000017809	ENSACLG00000017914	ENSACLG00000017924	tmx2b (ENSACLG00000017930)
Lyretail cichlid	MODERN SPECIES	434															ENSNBRG00000009348	vegfc (ENSNBRG00000009361) #22	ENSNBRG00000009420 #18	TENM3 (ENSNBRG00000009457) #18	fbxo8 (ENSNBRG00000009579) #33	hand2 (ENSNBRG00000009601) #34
Nile tilapia	MODERN SPECIES	18	cdc6 (ENSONIG00000000068)	ENSONIG00000024001	ENSONIG00000017072	ENSONIG00000031717	nup133 (ENSONIG00000000063)	taf5l (ENSONIG00000042576)	capn9 (ENSONIG00000000043)	ltv1 (ENSONIG00000000042)	ifngr1 (ENSONIG00000000041)	ENSONIG00000000863	pus10 (ENSONIG00000000036)	cct4 (ENSONIG00000000029)	ENSONIG00000029539	ENSONIG00000031693	XPO1 (ENSONIG00000000019)	vegfc (ENSONIG00000020065) #22	ENSONIG00000027232	ENSONIG00000029018	ENSONIG00000034718	ENSONIG00000042250	ENSONIG00000036356	ENSONIG00000010902	ENSONIG00000041316	ENSONIG00000010912	ENSONIG00000027241	ENSONIG00000034089	tmx2b (ENSONIG00000010916)	ENSONIG00000028344	zdhhc5a (ENSONIG00000010920)	ENSONIG00000031025	ENSONIG00000027993
Midas cichlid	MODERN SPECIES	861																vegfc (ENSACIG00000008173) #22
Pomacentridae	ANCESTRAL SPECIES	221															ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.b #18	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34
Pomacentridae_A	ANCESTRAL SPECIES	250															ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34
Amphiprion	ANCESTRAL SPECIES	93							ENSGT00940000177045.b.b	ENSGT00390000009223 #23	ENSGT00940000165522.b	ENSGT00940000158105 #37	ENSGT00390000013419	ENSGT00390000010980	ENSGT01100000263495.A.a.a	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00530000067736	ENSGT00390000002789	ENSGT00940000177040	ENSGT00940000158966	ENSGT00940000153342.b	ENSGT01090000260226	ENSGT00730000111912.A.b	ENSGT00390000011529	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000003512.r
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000003660	ENSAPEG00000003765	ENSAPEG00000003786	ENSAPEG00000003999	ENSAPEG00000004117	ENSAPEG00000004139	ENSAPEG00000004150	spcs3 (ENSAPEG00000004172) #23	ENSAPEG00000004204	galnt7 (ENSAPEG00000004270) #37	ENSAPEG00000004391	zgc:153146 (ENSAPEG00000004404)	ENSAPEG00000004427	ENSAPEG00000004442	ENSAPEG00000004453	vegfc (ENSAPEG00000004465) #22	ENSAPEG00000004475	ENSAPEG00000004485	TENM3 (ENSAPEG00000004567) #18	dctd (ENSAPEG00000004793) #16	ENSAPEG00000004816 #32	fbxo8 (ENSAPEG00000004845) #33	dctd (ENSAPEG00000004901) #16	ENSAPEG00000004928 #32	hand2 (ENSAPEG00000004952) #34	ENSAPEG00000004997	ltv1 (ENSAPEG00000005031)	ENSAPEG00000005070	capn9 (ENSAPEG00000005095)	taf5l (ENSAPEG00000005137)	ENSAPEG00000005156
Clown anemonefish	MODERN SPECIES	3556					ENSAOCG00000003393	ENSAOCG00000003402	ENSAOCG00000003418	spcs3 (ENSAOCG00000003428) #23	ENSAOCG00000003430	galnt7 (ENSAOCG00000003472) #37	ENSAOCG00000003482	zgc:153146 (ENSAOCG00000003487)	ENSAOCG00000003494	ENSAOCG00000003507	ENSAOCG00000003518	vegfc (ENSAOCG00000001855) #22	ENSAOCG00000003544
Spiny chromis	MODERN SPECIES	2280																ENSAPOG00000021195 #22
Bicolor damselfish	MODERN SPECIES	669													AXIN2 (ENSSPAG00000023482)	ENSSPAG00000023478	ENSSPAG00000023475	vegfc (ENSSPAG00000023474) #22
Percomorphaceae_C	ANCESTRAL SPECIES	25	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000003049.b.a	ENSGT00940000174164	ENSGT00390000011272	ENSGT00390000013419	ENSGT00940000158105 #37	ENSGT00940000165522.b	ENSGT00390000009223 #23	ENSGT00940000155484.b
Eupercaria	ANCESTRAL SPECIES	39		ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b
Tetraodontidae	ANCESTRAL SPECIES	324															ENSGT00390000004697	ENSGT00940000156167.b #22
Fugu	MODERN SPECIES	8	gga3a (ENSTRUG00000012928)	jpt1a (ENSTRUG00000027712)	ENSTRUG00000023566	septin9b (ENSTRUG00000012787)	ENSTRUG00000012583	ENSTRUG00000025813	znf207b (ENSTRUG00000021140)	rhbdl3 (ENSTRUG00000012487)	rhot1b (ENSTRUG00000012264)	ENSTRUG00000012247	tefm (ENSTRUG00000012221)	suz12b (ENSTRUG00000012137)	utp6 (ENSTRUG00000012005)	rab11fip4b (ENSTRUG00000011924)	ENSTRUG00000011908	vegfc (ENSTRUG00000011792) #22	scpp3c (ENSTRUG00000010197)	dctd (ENSTRUG00000010985) #16	cisd2 (ENSTRUG00000010955)	ENSTRUG00000010782	bdh2 (ENSTRUG00000010690)	tacr3 (ENSTRUG00000017556)	cnga1a (ENSTRUG00000010274)	scpp5 (ENSTRUG00000010241)	scpp4 (ENSTRUG00000010217)	scpp3b (ENSTRUG00000010211)	ENSTRUG00000031165	scpp2 (ENSTRUG00000010164)	ENSTRUG00000009856	scpp1 (ENSTRUG00000009840)	aptx (ENSTRUG00000009794)
Tetraodon	MODERN SPECIES	26	KCNJ10 (ENSTNIG00000006226)	tppp2 (ENSTNIG00000006227)	ENSTNIG00000006228	ENSTNIG00000003230	rhot1b (ENSTNIG00000003231)	ENSTNIG00000003232	tefm (ENSTNIG00000003233)	suz12b (ENSTNIG00000003234)	utp6 (ENSTNIG00000003235)	rab11fip4b (ENSTNIG00000003236)	ENSTNIG00000001660	ENSTNIG00000004178	ENSTNIG00000004177	znf207b (ENSTNIG00000003722)	rhbdl3 (ENSTNIG00000003721)	vegfc (ENSTNIG00000003882) #22	CDH8 (ENSTNIG00000010135)	phospho2 (ENSTNIG00000010134)	SYAP1 (ENSTNIG00000010133)	ENSTNIG00000010132	slc7a6 (ENSTNIG00000010131)	slc7a6os (ENSTNIG00000010130)	ENSTNIG00000010129	MMP15 (ENSTNIG00000010128)	dhcr7 (ENSTNIG00000010127)	ENSTNIG00000014203	DPY19L3 (ENSTNIG00000004332)	ZNF507 (ENSTNIG00000003653)	tshz3b (ENSTNIG00000004737)	ENSTNIG00000001818	ptrh2 (ENSTNIG00000000826)
Eupecaria_A	ANCESTRAL SPECIES	36		ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b
Eupecaria_B	ANCESTRAL SPECIES	34		ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT01100000263495.A.a.a.n
Eupecaria_C	ANCESTRAL SPECIES	22	ENSGT00940000166507.i.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT01100000263495.A.a.a.n
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	21	ENSGT00940000166507.i.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT01100000263495.A.a.a.n
Large yellow croaker	MODERN SPECIES	481	ENSLCRG00005021283	DNAH2 (ENSLCRG00005021278)	ENSLCRG00005021276	ENSLCRG00005021275	p2rx3b (ENSLCRG00005021270)	pold4 (ENSLCRG00005021268)	ENSLCRG00005020894	slc43a1b (ENSLCRG00005020883)	zdhhc5a (ENSLCRG00005020872)	tmx2b (ENSLCRG00005020868)	TESK1 (ENSLCRG00005020864)	ENSLCRG00005020863	ENSLCRG00005020862	ENSLCRG00005020861	ENSLCRG00005020860	vegfc (ENSLCRG00005020858) #22	ENSLCRG00005020857	ENSLCRG00005020856	ENSLCRG00005020854	TENM3 (ENSLCRG00005017609) #18	dctd (ENSLCRG00005017545) #16	ENSLCRG00005017543	cep44 (ENSLCRG00005017541) #32	fbxo8 (ENSLCRG00005017537) #33	hand2 (ENSLCRG00005017535) #34	ENSLCRG00005017532	PLPPR5 (ENSLCRG00005017528)	tyw3 (ENSLCRG00005017527)	ENSLCRG00005017525	ENSLCRG00005017523	ttpa (ENSLCRG00005017518)
European seabass	MODERN SPECIES	20	ENSDLAG00005028328	p2rx3b (ENSDLAG00005014004)	pold4 (ENSDLAG00005030456)	ENSDLAG00005011599	slc43a1b (ENSDLAG00005011401)	ENSDLAG00005026455	ENSDLAG00005011372	ENSDLAG00005011312	ENSDLAG00005011297	ENSDLAG00005011282	ENSDLAG00005011278	ENSDLAG00005011264	ENSDLAG00005011216	ENSDLAG00005028809	ENSDLAG00005011196	ENSDLAG00005034844 #22	ENSDLAG00005030132 #16	ENSDLAG00005010255 #18	cep44 (ENSDLAG00005008903) #32	ENSDLAG00005030601 #33	hand2 (ENSDLAG00005008932) #34	ENSDLAG00005008934	ENSDLAG00005008941	ENSDLAG00005009068	ENSDLAG00005026375	ENSDLAG00005010249	ENSDLAG00005028393	ENSDLAG00005003170	ENSDLAG00005032186	ENSDLAG00005030918	ENSDLAG00005028125
Gilthead seabream	MODERN SPECIES		ENSSAUG00010003895	ENSSAUG00010003890	GPM6A (ENSSAUG00010003880) #27	NDUFS8 (ENSSAUG00010003862)	zdhhc5a (ENSSAUG00010003847)	ENSSAUG00010020498	TMX2 (ENSSAUG00010020495)	ENSSAUG00010020493	ENSSAUG00010020490	ENSSAUG00010020488	ENSSAUG00010020486	ENSSAUG00010020485	ENSSAUG00010020483	ENSSAUG00010020482	ENSSAUG00010020476	vegfc (ENSSAUG00010020470) #22	dhrs12 (ENSSAUG00010020429)	ENSSAUG00010020420	ENSSAUG00010020418	ENSSAUG00010020415	TENM3 (ENSSAUG00010013265) #18	dctd (ENSSAUG00010013213) #16	dctd (ENSSAUG00010013210) #16	dctd (ENSSAUG00010013206) #16	dctd (ENSSAUG00010013208) #16	gria2a (ENSSAUG00010012962)	ENSSAUG00010012937	slkb (ENSSAUG00010008906)	stn1 (ENSSAUG00010008836)	SH3PXD2A (ENSSAUG00010008689)	neurl1aa (ENSSAUG00010008681)
Perciformes	ANCESTRAL SPECIES	45		ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223 #23	ENSGT00940000165522.b	ENSGT00940000158105 #37	ENSGT00390000013419	ENSGT00390000011272	ENSGT00390000003049.b.a
Perciformes_a	ANCESTRAL SPECIES	52	ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.n	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000153322.B.c	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223 #23	ENSGT00940000165522.b	ENSGT00940000158105 #37	ENSGT00390000013419	ENSGT00390000011272	ENSGT00390000003049.b.a
Channel bull blenny	MODERN SPECIES		ddt (ENSCGOG00000001222)	chchd10 (ENSCGOG00000001225)	ENSCGOG00000001230	p2rx3b (ENSCGOG00000001240)	pold4 (ENSCGOG00000001322)	ENSCGOG00000001541	slc43a1b (ENSCGOG00000007195)	zdhhc5a (ENSCGOG00000007444)	tmx2b (ENSCGOG00000007447)	ENSCGOG00000007556	ADISSP (ENSCGOG00000007559)	ENSCGOG00000007560	ENSCGOG00000007561	ENSCGOG00000007562	ENSCGOG00000007570	vegfc (ENSCGOG00000007575) #22	ENSCGOG00000007576	ENSCGOG00000007578	ENSCGOG00000007580	TENM3 (ENSCGOG00000007717) #18	dctd (ENSCGOG00000013980) #16	cep44 (ENSCGOG00000013986) #32	fbxo8 (ENSCGOG00000013990) #33	hand2 (ENSCGOG00000013992) #34	stx3a (ENSCGOG00000013994)	kdm2aa (ENSCGOG00000013996)	spcs3 (ENSCGOG00000014087) #23	ENSCGOG00000014092	ENSCGOG00000014094	galnt7 (ENSCGOG00000014102) #37	saraf (ENSCGOG00000014509)
Pike perch	MODERN SPECIES	359															ENSSLUG00000005812	vegfc (ENSSLUG00000005821) #22
Cottioidei	ANCESTRAL SPECIES	3	ENSGT01030000234563.b.a.b.a.a.c.a	ENSGT00940000176858	ENSGT00940000155062.a	ENSGT00940000157122.b.b	ENSGT00940000153576.c.a.a.b	ENSGT00940000165861	ENSGT00390000005096	ENSGT01020000230351.B.j.a	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01030000234627.a.b.a.a.b.a	ENSGT00940000155484.b	ENSGT00390000009223 #23	ENSGT00940000165522.b	ENSGT00940000158105 #37	ENSGT00390000013419	ENSGT00390000003049.b.a	ENSGT00520000055649.a	ENSGT00940000163551.i.b	ENSGT00950000183026.A.a.a.b
Stickleback	MODERN SPECIES	4	ENSGACG00000016319	ENSGACG00000016322	RPS6KB2 (ENSGACG00000016324)	ENSGACG00000016328	slc43a1b (ENSGACG00000016335)	ENSGACG00000016342	p2rx3b (ENSGACG00000016347)	zdhhc5a (ENSGACG00000016361)	tmx2b (ENSGACG00000016364)	TESK1 (ENSGACG00000016374)	ENSGACG00000016375	ENSGACG00000016377	ENSGACG00000016379	ENSGACG00000016382	ENSGACG00000016383	vegfc (ENSGACG00000016386) #22	TENM3 (ENSGACG00000016390) #18	dctd (ENSGACG00000016400) #16	fbxo8 (ENSGACG00000016412) #33	hand2 (ENSGACG00000016418) #34	stx3a (ENSGACG00000016420)	kdm2aa (ENSGACG00000016421)	spcs3 (ENSGACG00000016427) #23	ENSGACG00000016432	galnt7 (ENSGACG00000016436) #37	saraf (ENSGACG00000016440)	ndufs8a (ENSGACG00000016442)	patl1 (ENSGACG00000016448)	ENSGACG00000016455	ENSGACG00000016459	mtmr7b (ENSGACG00000016465)
Lumpfish	MODERN SPECIES														ENSCLMG00005000009	ENSCLMG00005000015	ENSCLMG00005000018	vegfc (ENSCLMG00005000028) #22	ENSCLMG00005000037	ENSCLMG00005000038	TENM3 (ENSCLMG00005000572) #18	dctd (ENSCLMG00005018167) #16	ENSCLMG00005018168 #32	fbxo8 (ENSCLMG00005018169) #33	hand2 (ENSCLMG00005018173) #34	ENSCLMG00005018192	ENSCLMG00005018227	ENSCLMG00005018229	spcs3 (ENSCLMG00005018231) #23	ENSCLMG00005018232	galnt7 (ENSCLMG00005018234) #37	saraf (ENSCLMG00005018254)	ndufs8a (ENSCLMG00005018255)
Ballan wrasse	MODERN SPECIES	105	ENSLBEG00000019992	ENSLBEG00000020008	ENSLBEG00000020025	ENSLBEG00000020037	ENSLBEG00000020051	ENSLBEG00000020068	ENSLBEG00000020126	ENSLBEG00000020145	ENSLBEG00000020212	ENSLBEG00000020305	ENSLBEG00000020312	ENSLBEG00000020320	ENSLBEG00000020344	ENSLBEG00000020383	ENSLBEG00000020414	vegfc (ENSLBEG00000020429) #22	TENM3 (ENSLBEG00000020476) #18	cep44 (ENSLBEG00000020625) #32	fbxo8 (ENSLBEG00000020645) #33	hand2 (ENSLBEG00000020681) #34	ENSLBEG00000020712	ENSLBEG00000020747	ENSLBEG00000020758
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT01100000263491.a.b.a.a.a.b.a	ENSGT00940000161345	ENSGT00940000166931	ENSGT00940000163205.d	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a #27	ENSGT00940000155980.B	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31
Anabantaria	ANCESTRAL SPECIES	48					ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00390000013973.A.a.c.b.a	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34
Zig-zag eel	MODERN SPECIES		ENSMAMG00000002731	ENSMAMG00000002740	ENSMAMG00000002807	ENSMAMG00000002866	ENSMAMG00000002930	ENSMAMG00000002950	ENSMAMG00000002998	slc43a1b (ENSMAMG00000003012)	ENSMAMG00000003057	pold4 (ENSMAMG00000003177)	ENSMAMG00000003194	ENSMAMG00000003204	ENSMAMG00000003226	ENSMAMG00000003247	ENSMAMG00000003269	ENSMAMG00000003298 #22	ENSMAMG00000003330	ENSMAMG00000003364 #18	ENSMAMG00000003495 #16	cep44 (ENSMAMG00000003510) #32	ENSMAMG00000026096 #33	hand2 (ENSMAMG00000003557) #34	ENSMAMG00000028518	ENSMAMG00000003580 #27	ENSMAMG00000026834 #27	ENSMAMG00000027721	glra3 (ENSMAMG00000003626) #30	hpgd (ENSMAMG00000026813) #31	wdr17 (ENSMAMG00000003713) #26	ENSMAMG00000003816 #36	ENSMAMG00000003832
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000013419	ENSGT00390000011272	ENSGT00390000003049.b.a	ENSGT01100000263495.A.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000006833	ENSBSLG00000006722	ENSBSLG00000006468	ENSBSLG00000005753	ENSBSLG00000005739	ENSBSLG00000005555	acot8 (ENSBSLG00000004970)	acot8 (ENSBSLG00000000289)	ENSBSLG00000000282	ENSBSLG00000000275	ENSBSLG00000000261	RPE65 (ENSBSLG00000000251)	ENSBSLG00000000194	ENSBSLG00000000158	ENSBSLG00000000125	vegfc (ENSBSLG00000023591) #22	ENSBSLG00000023584	vegfc (ENSBSLG00000023549) #22	ENSBSLG00000023543	ENSBSLG00000023530	ENSBSLG00000023488	ENSBSLG00000023480	ENSBSLG00000023472	ENSBSLG00000023348	ENSBSLG00000023318	TENM3 (ENSBSLG00000018093) #18	dctd (ENSBSLG00000017363) #16	ENSBSLG00000017312	AXIN2 (ENSBSLG00000017284)	prf1.2 (ENSBSLG00000017225)	ENSBSLG00000017195
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000006468	ENSBSLG00000005753	ENSBSLG00000005739	ENSBSLG00000005555	acot8 (ENSBSLG00000004970)	acot8 (ENSBSLG00000000289)	ENSBSLG00000000282	ENSBSLG00000000275	ENSBSLG00000000261	RPE65 (ENSBSLG00000000251)	ENSBSLG00000000194	ENSBSLG00000000158	ENSBSLG00000000125	vegfc (ENSBSLG00000023591) #22	ENSBSLG00000023584	vegfc (ENSBSLG00000023549) #22	ENSBSLG00000023543	ENSBSLG00000023530	ENSBSLG00000023488	ENSBSLG00000023480	ENSBSLG00000023472	ENSBSLG00000023348	ENSBSLG00000023318	TENM3 (ENSBSLG00000018093) #18	dctd (ENSBSLG00000017363) #16	ENSBSLG00000017312	AXIN2 (ENSBSLG00000017284)	prf1.2 (ENSBSLG00000017225)	ENSBSLG00000017195	TEX2 (ENSBSLG00000017156)	ENSBSLG00000017037
Climbing perch	MODERN SPECIES						p2rx3b (ENSATEG00000003860)	pold4 (ENSATEG00000026596)	ENSATEG00000003700	slc43a1b (ENSATEG00000003687)	ENSATEG00000003675	ENSATEG00000003616	ENSATEG00000003607	ENSATEG00000003583	ENSATEG00000003550	ENSATEG00000026424	ENSATEG00000003514	ENSATEG00000003508 #22	ENSATEG00000003278 #18	ENSATEG00000025497 #16	cep44 (ENSATEG00000003246) #32	ENSATEG00000003189 #33	hand2 (ENSATEG00000003171) #34	ENSATEG00000003140	ENSATEG00000003079	ENSATEG00000002976 #37	ENSATEG00000002966 #24	ENSATEG00000029485 #23	ENSATEG00000002928	ENSATEG00000002880	ENSATEG00000002868	ENSATEG00000029716	ENSATEG00000002857
Carangaria	ANCESTRAL SPECIES		ENSGT01100000263495.A.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00940000165823.d	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000163205.d	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a #27	ENSGT00940000155980.B	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00940000158602 #26	ENSGT00940000154466 #36	ENSGT00390000002918.a.a
Carangaria_A	ANCESTRAL SPECIES	62	ENSGT00390000003049.b.a	ENSGT01100000263495.A.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT01100000263483.E.b.b.j	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a #27	ENSGT00940000155980.B	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00940000158602 #26	ENSGT00940000154466 #36	ENSGT00390000002918.a.a	ENSGT00940000155777.b
Barramundi perch	MODERN SPECIES	226										ENSLCAG00010015310	ENSLCAG00010015314	ENSLCAG00010015316	ENSLCAG00010015319	ENSLCAG00010015321	ENSLCAG00010015332	vegfc (ENSLCAG00010015342) #22	TENM3 (ENSLCAG00010015461) #18
Seriola	ANCESTRAL SPECIES	11	ENSGT00940000174164	ENSGT00390000003049.b.a	ENSGT01100000263495.A.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165127.a	ENSGT00940000168028	ENSGT01020000230338.a.b.b.a.a.b.a.a.a	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT00990000203726	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34	ENSGT00940000157122.b.b	ENSGT00980000200302	ENSGT00940000156344.a	ENSGT00940000156950.b	ENSGT00390000006915.d.j.a #27	ENSGT00940000155980.B	ENSGT00940000158368 #30	ENSGT00940000154593.a.b #31	ENSGT00940000158602 #26
Greater amberjack	MODERN SPECIES	93	ndufs8a (ENSSDUG00000006551)	ENSSDUG00000006540	ENSSDUG00000006529	p2rx3b (ENSSDUG00000006439)	pold4 (ENSSDUG00000006401)	ENSSDUG00000006297	slc43a1b (ENSSDUG00000006234)	zdhhc5a (ENSSDUG00000006208)	tmx2b (ENSSDUG00000006174)	ENSSDUG00000006145	ADISSP (ENSSDUG00000006122)	ENSSDUG00000006084	ENSSDUG00000006043	ENSSDUG00000006003	ENSSDUG00000005987	vegfc (ENSSDUG00000005963) #22	ENSSDUG00000005946	ENSSDUG00000005924	ENSSDUG00000005910 #18	TENM3 (ENSSDUG00000005581) #18	dctd (ENSSDUG00000005527) #16	cep44 (ENSSDUG00000005496) #32	fbxo8 (ENSSDUG00000005461) #33	hand2 (ENSSDUG00000005437) #34	ENSSDUG00000005378	ENSSDUG00000005355	glrba (ENSSDUG00000005332)	gria2a (ENSSDUG00000005301)	GPM6A (ENSSDUG00000005279) #27	ENSSDUG00000005260	glra3 (ENSSDUG00000004967) #30
Yellowtail amberjack	MODERN SPECIES	3281	ENSSLDG00000020175	ENSSLDG00000020160	p2rx3b (ENSSLDG00000020142)	ENSSLDG00000020133	ENSSLDG00000020100	slc43a1b (ENSSLDG00000020034)	zdhhc5a (ENSSLDG00000020012)	tmx2b (ENSSLDG00000019982)	ENSSLDG00000019956	TESK1 (ENSSLDG00000019934)	ADISSP (ENSSLDG00000019910)	ENSSLDG00000019870	ENSSLDG00000019793	ENSSLDG00000019775	ENSSLDG00000019761	vegfc (ENSSLDG00000019755) #22	ENSSLDG00000019742	ENSSLDG00000019723 #18	ENSSLDG00000019705 #18	ENSSLDG00000019690 #18	dctd (ENSSLDG00000019653) #16	cep44 (ENSSLDG00000019636) #32	fbxo8 (ENSSLDG00000019619) #33	hand2 (ENSSLDG00000019601) #34	ENSSLDG00000019546	ENSSLDG00000019526
Pleuronectoidei	ANCESTRAL SPECIES	76	ENSGT00390000011272	ENSGT00390000003049.b.a	ENSGT01100000263495.A.a.a	ENSGT01020000230351.B.j.a	ENSGT00390000005096	ENSGT00940000165861	ENSGT00940000153576.c.a.a.b	ENSGT00940000156001.c	ENSGT00390000003751.a	ENSGT00940000157807.g.b	ENSGT00390000008711.h	ENSGT00940000165823.d	ENSGT00940000168028	ENSGT00940000153322.B.c	ENSGT00390000004697	ENSGT00940000156167.b #22	ENSGT01030000234566.e.b.a.a.a.a #18	ENSGT00940000153676.a #16	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772 #34
Tongue sole	MODERN SPECIES	19	DNAH6 (ENSCSEG00000011087)	SCLT1 (ENSCSEG00000011046)	zgc:77739 (ENSCSEG00000011038)	ENSCSEG00000011028	pcdh10a (ENSCSEG00000011010)	pcdh18a (ENSCSEG00000010994)	ENSCSEG00000010986	ENSCSEG00000010979	ENSCSEG00000010974	ENSCSEG00000010963	PTGDR2 (ENSCSEG00000010959)	cabp2a (ENSCSEG00000010944)	ENSCSEG00000010935	ENSCSEG00000010923	ENSCSEG00000010914	vegfc (ENSCSEG00000010904) #22	TENM3 (ENSCSEG00000010849) #18	ENSCSEG00000010831 #32	dctd (ENSCSEG00000010821) #16	CCSAP (ENSCSEG00000010817)	ACTA1 (ENSCSEG00000010802)	ENSCSEG00000010795	nup133 (ENSCSEG00000010705)	taf5l (ENSCSEG00000010683)	capn9 (ENSCSEG00000010637)	ENSCSEG00000010630	ltv1 (ENSCSEG00000010617)	ifngr1 (ENSCSEG00000010604)	ENSCSEG00000010124	ENSCSEG00000010083	vps54 (ENSCSEG00000010003)
Turbot	MODERN SPECIES	20	ENSSMAG00000016110	hmx4 (ENSSMAG00000016154)	hmx1 (ENSSMAG00000016158)	adra2c (ENSSMAG00000016188)	lrpap1 (ENSSMAG00000016192)	rgs12b (ENSSMAG00000016246)	htt (ENSSMAG00000016361)	ENSSMAG00000016536	ENSSMAG00000016589	ENSSMAG00000016601	GET3 (ENSSMAG00000016622)	ENSSMAG00000016640	JUNB (ENSSMAG00000016696)	ENSSMAG00000024275	ENSSMAG00000033239	ENSSMAG00000016738 #22
Pinecone sodierfish	MODERN SPECIES		ENSMMDG00005021108	ENSMMDG00005000122	slc43a1b (ENSMMDG00005000228)	tmx2b (ENSMMDG00005000324)	zdhhc5a (ENSMMDG00005000340)	ENSMMDG00005000357	ENSMMDG00005000374	ENSMMDG00005000389	ENSMMDG00005000407	ENSMMDG00005000428	ENSMMDG00005000450	ENSMMDG00005000455	ENSMMDG00005000457	ENSMMDG00005000462	ENSMMDG00005000465	vegfc (ENSMMDG00005000467) #22	TENM3 (ENSMMDG00005000508) #18	dctd (ENSMMDG00005000595) #16	wdr17 (ENSMMDG00005000651) #26	hmgb2a (ENSMMDG00005000877) #36	hand2 (ENSMMDG00005000878) #34	fbxo8 (ENSMMDG00005000879) #33	ENSMMDG00005000882 #32	hpgd (ENSMMDG00005000883) #31	glra3 (ENSMMDG00005000886) #30	pmm2 (ENSMMDG00005000890)	GRIA2 (ENSMMDG00005000901)	ENSMMDG00005000918	ENSMMDG00005000919	glrba (ENSMMDG00005000921)	ENSMMDG00005000922 #27
Cod	MODERN SPECIES	16	ENSGMOG00000012813	ENSGMOG00000036651	ENSGMOG00000022916	ENSGMOG00000033914	ENSGMOG00000031520	ENSGMOG00000022234	ENSGMOG00000035318	ENSGMOG00000029127	ENSGMOG00000027315	ENSGMOG00000033772	ENSGMOG00000036124	ENSGMOG00000037207	ENSGMOG00000022623	ENSGMOG00000033515	ENSGMOG00000003175	ENSGMOG00000016705 #22	ENSGMOG00000022571	ENSGMOG00000029049	ENSGMOG00000004795 #18	ENSGMOG00000004894 #16	ENSGMOG00000004905	ENSGMOG00000004927	ENSGMOG00000024328	ENSGMOG00000026931	ENSGMOG00000007088 #27	ENSGMOG00000016486 #26	glra3 (ENSGMOG00000005468) #30	hpgd (ENSGMOG00000001937) #31	cep44 (ENSGMOG00000001932) #32	ENSGMOG00000030231	fbxo8 (ENSGMOG00000001920) #33
Osteoglossiformes	ANCESTRAL SPECIES	220														ENSGT00410000025556.a.a.a.b #15	ENSGT01030000234566.e.b.a.a.d.b #18	ENSGT00940000156167.b #22	ENSGT00390000009223 #23	ENSGT00940000165059.A	ENSGT00940000158602 #26	ENSGT00390000006915.d.j.a #27	ENSGT00940000158368.i #30	ENSGT00940000154593.a.b #31	ENSGT00390000009873 #32	ENSGT00940000158356 #33	ENSGT00940000160772.i #34	ENSGT00390000009191	ENSGT00940000154466 #36	ENSGT00940000158105.i #37	ENSGT00940000155038.tc	ENSGT00390000000973.a.b.i	ENSGT00510000046908.a.b
Asian bonytongue	MODERN SPECIES	7	SNX25 (ENSSFOG00015020775)	cfap97 (ENSSFOG00015030570)	slc25a4 (ENSSFOG00015005428)	helt (ENSSFOG00015024516)	acsl1b (ENSSFOG00015020657)	primpol (ENSSFOG00015020632)	ENSSFOG00015028201	casp3a (ENSSFOG00015020608) #7	ENSSFOG00015020576 ##7	IRF2 (ENSSFOG00015032334) #8	STOX2 (ENSSFOG00015020536) #10	ENSSFOG00015020518	trappc11 (ENSSFOG00015020365) #11	WWC2 (ENSSFOG00015020303) #15	TENM3 (ENSSFOG00015020254) #18	vegfc (ENSSFOG00015020236) #22	spcs3 (ENSSFOG00015020226) #23	asb5b (ENSSFOG00015027571)	wdr17 (ENSSFOG00015020006) #26	GPM6A (ENSSFOG00015019961) #27	glra3 (ENSSFOG00015019945) #30	hpgd (ENSSFOG00015019878) #31	cep44 (ENSSFOG00015019847) #32	fbxo8 (ENSSFOG00015025727) #33	hand2 (ENSSFOG00015019807) #34	SCRG1 (ENSSFOG00015029537)	hmgb2a (ENSSFOG00015019784) #36	galnt7 (ENSSFOG00015019762) #37	galntl6 (ENSSFOG00015019733)	FAM193A (ENSSFOG00015019654)	TNIP2 (ENSSFOG00015019632)
P. kingsleyae	MODERN SPECIES	149	necap1 (ENSPKIG00000001526)	aicda (ENSPKIG00000001499)	nat14 (ENSPKIG00000001489)	ENSPKIG00000001476	ENSPKIG00000001446	rasip1 (ENSPKIG00000001398)	cox6b2 (ENSPKIG00000001372)	GBP1 (ENSPKIG00000001343)	ENSPKIG00000001311	has1 (ENSPKIG00000001273)	ENSPKIG00000001253 #15	ENSPKIG00000001231 #15	ENSPKIG00000001218 #15	TENM3 (ENSPKIG00000001176) #18	ENSPKIG00000001157 #18	vegfc (ENSPKIG00000001136) #22	spcs3 (ENSPKIG00000001115) #23	ENSPKIG00000001073	ENSPKIG00000001058	DCTN1 (ENSPKIG00000000855)	ENSPKIG00000000767	ENSPKIG00000000758	CPXM1 (ENSPKIG00000000727)	si:dkey-33c12.12 (ENSPKIG00000000701)	si:dkey-33c12.3 (ENSPKIG00000000695)	ENSPKIG00000000681	fgf24 (ENSPKIG00000000666)	PCGF1 (ENSPKIG00000000641)	lbx2 (ENSPKIG00000000628)	nanos1 (ENSPKIG00000000617)
Spotted gar	MODERN SPECIES	670	ENSLOCG00000013756	primpol (ENSLOCG00000013749)	casp3a (ENSLOCG00000013742) #7	irf2 (ENSLOCG00000013738) #8	enpp6 (ENSLOCG00000013730) #9	STOX2 (ENSLOCG00000013723) #10	ENSLOCG00000013715	trappc11 (ENSLOCG00000013704) #11	rwdd (ENSLOCG00000013699) #12	ENSLOCG00000013696	WWC2 (ENSLOCG00000013682) #15	dctd (ENSLOCG00000013678) #16	TENM3 (ENSLOCG00000013649) #18	aga (ENSLOCG00000013645) #20	neil3 (ENSLOCG00000013638) #21	vegfc (ENSLOCG00000013634) #22	spcs3 (ENSLOCG00000013631) #23	ASB5 (ENSLOCG00000013627) #24	spata4 (ENSLOCG00000013625) #25	wdr17 (ENSLOCG00000013618) #26	gpm6aa (ENSLOCG00000013615) #27	glra3 (ENSLOCG00000013603) #30	hpgd (ENSLOCG00000013597) #31	cep44 (ENSLOCG00000013590) #32	fbxo8 (ENSLOCG00000013587) #33	hand2 (ENSLOCG00000013581) #34	hmgb2a (ENSLOCG00000013578) #36	galnt7 (ENSLOCG00000013565) #37	galntl6 (ENSLOCG00000013556)	FAM193A (ENSLOCG00000013548)	ENSLOCG00000013545
Reedfish	MODERN SPECIES	27																vegfc (ENSECRG00000017065) #22	spcs3 (ENSECRG00000017031) #23	ASB5 (ENSECRG00000016987) #24	spata4 (ENSECRG00000016967) #25	wdr17 (ENSECRG00000016860) #26	gpm6aa (ENSECRG00000016736) #27	glra3 (ENSECRG00000016525) #30	hpgd (ENSECRG00000016454) #31	cep44 (ENSECRG00000016427) #32	fbxo8 (ENSECRG00000016398) #33	hand2 (ENSECRG00000016377) #34	SCRG1 (ENSECRG00000016365)	hmgb2a (ENSECRG00000016345) #36	galnt7 (ENSECRG00000015660) #37	ENSECRG00000015568	galntl6 (ENSECRG00000015478)
Elephant shark	MODERN SPECIES	1528											dctd (ENSCMIG00000002345) #16	ENSCMIG00000002357	TENM3 (ENSCMIG00000002539) #18	aga (ENSCMIG00000003129) #20	neil3 (ENSCMIG00000003137) #21	vegfc (ENSCMIG00000003140) #22	spcs3 (ENSCMIG00000003145) #23	ASB5 (ENSCMIG00000003152) #24	ENSCMIG00000003160 #25	wdr17 (ENSCMIG00000003311) #26	gpm6aa (ENSCMIG00000003614) #27	glra3 (ENSCMIG00000003633) #30	hpgd (ENSCMIG00000003712) #31	ENSCMIG00000003714 ##31	CEP44 (ENSCMIG00000003718) #32	fbxo8 (ENSCMIG00000003723) #33	hand2 (ENSCMIG00000003727) #34	SCRG1 (ENSCMIG00000003731)	SAP30 (ENSCMIG00000003733) #35	hmgb2 (ENSCMIG00000003737) #36	galnt7 (ENSCMIG00000003756) #37
Gnathostomata	ANCESTRAL SPECIES	1131																ENSGT00940000156167.a ##22	ENSGT00390000006983	ENSGT00390000001803
Euteleostomi	ANCESTRAL SPECIES	43	ENSGT00390000007586.b	ENSGT00390000006954	ENSGT00390000002792	ENSGT00950000183027.a.a	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703	ENSGT00390000008961	ENSGT00730000111382	ENSGT00940000157656.a	ENSGT00940000155150.b.b	ENSGT00940000160823	ENSGT00940000164078.a	ENSGT00940000157138	ENSGT00940000155506	ENSGT00940000156167.a ##22	ENSGT00390000006983
Actinopterygii	ANCESTRAL SPECIES	30	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00990000205617	ENSGT00940000153727.a	ENSGT00940000153727.b	ENSGT00390000006178	ENSGT00390000008104	ENSGT00730000111382	ENSGT00940000157656.a	ENSGT00940000155150.b.b	ENSGT00940000160823	ENSGT00940000164078.a.b	ENSGT00940000164078.a.a	ENSGT00940000157138	ENSGT00940000155506	ENSGT00940000156167.a ##22	ENSGT00390000006983.b	ENSGT00390000001803	ENSGT00390000000002.a.a.b	ENSGT00390000007844	ENSGT00950000182827.F	ENSGT00390000005689	ENSGT00390000008961	ENSGT00390000000703	ENSGT00940000157857	ENSGT00390000002792	ENSGT00950000183027.a.a
Neopterygii	ANCESTRAL SPECIES	105	ENSGT00390000005922.b	ENSGT00990000205617	ENSGT00940000153727.a	ENSGT00940000153727.b	ENSGT00390000006178	ENSGT00390000008104	ENSGT01060000249180	ENSGT00730000111382	ENSGT00940000157656.a	ENSGT00940000155150.b.b	ENSGT00940000160823	ENSGT00940000164078.a.b	ENSGT00940000164078.a.a	ENSGT00940000157138	ENSGT00940000155506	ENSGT00940000156167.a ##22	ENSGT00390000006983.b	ENSGT00390000001803	ENSGT00390000000002.a.a.b	ENSGT00390000007844	ENSGT00950000182827.F	ENSGT00390000005689	ENSGT00940000171010	ENSGT00390000008961	ENSGT00390000000703	ENSGT00940000157857	ENSGT00390000002792	ENSGT00950000183027.a.a	ENSGT00940000165461	ENSGT00940000153664.A.b.b	ENSGT00940000164577
Osteoglossocephalai	ANCESTRAL SPECIES	122	ENSGT00940000153727.b	ENSGT00390000006178	ENSGT00390000008104	ENSGT01060000249180	ENSGT00730000111382	ENSGT00940000157656.a	ENSGT00940000159769.a.b	ENSGT00940000164078.a.b.b	ENSGT00940000164078.a.a	ENSGT00940000157138.a	ENSGT00940000155506.e	ENSGT00940000155150.b.b	ENSGT00940000164078.a.b.a.a	ENSGT00940000157138.b	ENSGT00940000155506.f	ENSGT00940000156167.a ##22	ENSGT00390000001803	ENSGT00390000006983.b	ENSGT00390000000002.a.a.b	ENSGT00390000007844.b	ENSGT00940000180773	ENSGT00390000000537.y	ENSGT00990000205168	ENSGT00390000000537.z	ENSGT00940000156413	ENSGT00940000158327	ENSGT00950000183015.E	ENSGT00940000161005	ENSGT00940000165778	ENSGT00940000166182	ENSGT00940000154461
Clupeocephala	ANCESTRAL SPECIES	74	ENSGT01060000248594.e.a	ENSGT00940000159922.a.a	ENSGT00390000001134.b.ab	ENSGT00950000182994.A	ENSGT00940000157482.f	ENSGT00940000165810	ENSGT00940000174470	ENSGT00940000153727.b	ENSGT00390000006178	ENSGT01060000249180	ENSGT00940000166125	ENSGT00940000155150.b.b	ENSGT00940000164078.a.b.a.a	ENSGT00940000157138.b	ENSGT00940000155506.f	ENSGT00940000156167.a ##22	ENSGT00390000001803	ENSGT00390000000002.a.a.b	ENSGT00940000180773	ENSGT00390000000703	ENSGT00940000157857	ENSGT00390000002792	ENSGT00950000183027.a.a.b	ENSGT00940000165461	ENSGT00940000153664.A.b.b	ENSGT00940000177027	ENSGT00940000164577.b	ENSGT00940000166254.a	ENSGT00940000178677	ENSGT00950000183177.a.a.a.a.g	ENSGT00940000164356.b
Euteleosteomorpha	ANCESTRAL SPECIES	189			ENSGT00390000001134.b.`b.a	ENSGT00950000182994.A	ENSGT00940000157482.f	ENSGT00940000165810	ENSGT00940000174470	ENSGT00940000153727.b	ENSGT00390000006178	ENSGT01060000249180	ENSGT00940000166125	ENSGT00940000155150.b.b	ENSGT00940000164078.a.b.a.a	ENSGT00940000157138.b	ENSGT00940000155506.f	ENSGT00940000156167.a ##22	ENSGT00390000001803	ENSGT00390000000002.a.a.b	ENSGT00940000169140	ENSGT00390000000703	ENSGT00950000183027.a.a.a	ENSGT00940000164577.a	ENSGT00940000166254.b	ENSGT00950000183177.a.a.a.a.h	ENSGT00940000164356.a	ENSGT00940000158978.a.b	ENSGT00940000156647.b	ENSGT00390000000537.y	ENSGT00940000159722	ENSGT00940000163514.C	ENSGT00940000165066.i.a.a
Protacanthopterygii	ANCESTRAL SPECIES	28	ENSGT00510000052596.a	ENSGT00390000002866.b	ENSGT00950000182987.c.b	ENSGT00390000001610.c.a	ENSGT01000000215456	ENSGT00390000008104	ENSGT00940000157656.a	ENSGT01100000264352	ENSGT00940000164078.a.a	ENSGT00940000157138.a	ENSGT00940000155506.e	ENSGT00390000006983.b	ENSGT00940000164078.a.b.a.a.b	ENSGT00940000157138.b	ENSGT00940000155506.f	ENSGT00940000156167.a ##22	ENSGT00390000001803	ENSGT00390000000002.a.a.b	ENSGT00390000007844.b	ENSGT00950000182827.F	ENSGT00390000008961	ENSGT00940000157857	ENSGT00390000002792	ENSGT00950000183027.a.a.b	ENSGT00940000165461	ENSGT00940000153664.A.b.b	ENSGT00940000164577.b	ENSGT00940000166254.a	ENSGT00950000183177.a.a.a.a.g	ENSGT00940000164356.b	ENSGT00940000176098
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	99									ENSGT00940000157424.m.a.b	ENSGT00390000006178.a	ENSGT00940000166125.a	ENSGT00940000155150.b.b.c	ENSGT00940000164078.a.b.a.a.b	ENSGT00940000157138.b	ENSGT00940000155506.f.a	ENSGT00940000156167.a.a ##22	ENSGT00390000001803.g	ENSGT00390000000002.a.a.b.i.a	ENSGT00390000007844.b.e.a	ENSGT00940000180773	ENSGT00390000000703.bb	ENSGT00940000157857.i.a	ENSGT00390000002792.a.a	ENSGT00940000164577.a.d	ENSGT00940000166254.b.c	ENSGT00950000183177.a.a.a.a.h.f	ENSGT00940000164356.a.a	ENSGT00940000158978.a.b.c	ENSGT00940000156647.b.c	ENSGT00390000000537.y.c	ENSGT00950000183015.E.i.a
Salmoninae_a	ANCESTRAL SPECIES	94	ENSGT00940000159922.a.a.a	ENSGT00390000001134.b.ab.i.a	ENSGT00950000182994.A	ENSGT00390000001134.b.`b.b.i.a	ENSGT00940000158972	ENSGT00940000157904.b.e.a	ENSGT00940000166658.a.g	ENSGT00940000157482.f.b.b	ENSGT00940000157424.m.a.b	ENSGT00390000006178.a	ENSGT00940000166125.a	ENSGT00940000155150.b.b.c	ENSGT00940000164078.a.b.a.a.b	ENSGT00940000157138.b	ENSGT00940000155506.f.a	ENSGT00940000156167.a.a ##22	ENSGT00390000001803.g	ENSGT00390000000002.a.a.b.i.a	ENSGT00390000007844.b.e.a	ENSGT00390000000703.bb	ENSGT00940000157857.i.a	ENSGT00390000002792.a.a	ENSGT00940000164577.a.d	ENSGT00940000166254.b.c	ENSGT00950000183177.a.a.a.a.h.f	ENSGT00940000164356.a.a	ENSGT00940000158978.a.b.c	ENSGT00940000156647.b.c	ENSGT00390000000537.y.c	ENSGT00950000183015.E.i.a	ENSGT00940000159722
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000159922.a.a.a	ENSGT00390000001134.b.ab.i.a	ENSGT00950000182994.A	ENSGT00390000001134.b.`b.b.i.a	ENSGT00940000158972	ENSGT00940000157904.b.e.a	ENSGT00940000166658.a.g	ENSGT00940000157482.f.a.a.a	ENSGT00940000157424.m.a.b	ENSGT00390000006178.a	ENSGT00940000166125.a	ENSGT00940000155150.b.b.c	ENSGT00940000164078.a.b.a.a.b	ENSGT00940000157138.b	ENSGT00940000155506.f.a	ENSGT00940000156167.a.a ##22	ENSGT00390000001803.g	ENSGT00390000000002.a.a.b.i.a	ENSGT00390000007844.b.e.a	ENSGT00390000000703.bb	ENSGT00940000157857.i.a	ENSGT00390000002792.a.a	ENSGT00940000164577.a.d	ENSGT00940000166254.b.c	ENSGT00940000164356.a.a	ENSGT00940000158978.a.b.c	ENSGT00940000156647.b.c	ENSGT00390000000537.y.c	ENSGT00950000183015.E.i.a	ENSGT00940000159722	ENSGT00940000163648.a.a.a.a.b.b.b
Oncorhynchus_a	ANCESTRAL SPECIES	76	ENSGT01060000248594.e.a.n.b.a	ENSGT00940000159922.a.a.a	ENSGT00390000001134.b.ab.i.a	ENSGT00950000182994.A	ENSGT00940000158972	ENSGT00940000157904.b.e.a	ENSGT00940000166658.a.g	ENSGT00940000157482.f.a.a.a	ENSGT00940000157424.m.a.b	ENSGT00390000006178.a	ENSGT00940000166125.a	ENSGT00940000155150.b.b.c	ENSGT00940000164078.a.b.a.a.b	ENSGT00940000157138.b	ENSGT00940000155506.f.a	ENSGT00940000156167.a.a ##22	ENSGT00390000001803.g	ENSGT00390000000002.a.a.b.i.a	ENSGT00390000007844.b.e.a	ENSGT00390000000703.bb	ENSGT00940000157857.i.a	ENSGT00390000002792.a.a	ENSGT00940000164577.a.d	ENSGT00940000166254.b.c	ENSGT00940000164356.a.a	ENSGT00940000158978.a.b.c	ENSGT00940000156647.b.c	ENSGT00390000000537.y.c	ENSGT00950000183015.E.i.a	ENSGT00940000159722	ENSGT00940000163648.a.a.a.a.b.b.b
Chinook salmon	MODERN SPECIES	23	TRPC5 (ENSOTSG00005022771)	alg13 (ENSOTSG00005022770)	dacha (ENSOTSG00005022768)	chm (ENSOTSG00005022728)	ENSOTSG00005022722	stk26 (ENSOTSG00005022702)	map4k6 (ENSOTSG00005016850)	ENSOTSG00005016831	ENSOTSG00005016830	ndufa2 (ENSOTSG00005016829)	ENSOTSG00005016828	camk2a (ENSOTSG00005016006)	cdx1b (ENSOTSG00005016001)	PDGFRB (ENSOTSG00005016000)	CSF1R (ENSOTSG00005013698)	ENSOTSG00005013687 ##22	sra1 (ENSOTSG00005013684)	APBB3 (ENSOTSG00005013678)	ENSOTSG00005013676	rps14 (ENSOTSG00005013672)	ndst1b (ENSOTSG00005013281)	rbm22 (ENSOTSG00005013269)	arl3l1 (ENSOTSG00005013262)	ENSOTSG00005013261	adra2db (ENSOTSG00005013260)	cnot6a (ENSOTSG00005013241)	ADAMTS2 (ENSOTSG00005013202)	zgc:123105 (ENSOTSG00005013195)	ENSOTSG00005013194	clk4b (ENSOTSG00005013191)	cldn3d (ENSOTSG00005013190)
Coho salmon	MODERN SPECIES	20	alg13 (ENSOKIG00005047132)	dacha (ENSOKIG00005047156)	chm (ENSOKIG00005047171)	frmd7 (ENSOKIG00005047232)	frmd7 (ENSOKIG00005047239)	stk26 (ENSOKIG00005047280)	map4k6 (ENSOKIG00005047555)	ENSOKIG00005048129	ENSOKIG00005048143	NDUFA2 (ENSOKIG00005048160)	CAMK2A (ENSOKIG00005048184)	ENSOKIG00005038049	ENSOKIG00005038087	CSF1R (ENSOKIG00005038265)	ENSOKIG00005039815	ENSOKIG00005039840 ##22	APBB3 (ENSOKIG00005039860)	ENSOKIG00005039885	rps14 (ENSOKIG00005039896)	ndst1b (ENSOKIG00005039923)	rbm22 (ENSOKIG00005039952)	arl3l1 (ENSOKIG00005039981)	ENSOKIG00005040115	adra2db (ENSOKIG00005040171)	cnot6a (ENSOKIG00005040188)	ADAMTS2 (ENSOKIG00005040340)	zgc:123105 (ENSOKIG00005041961)	ENSOKIG00005041970	clk4b (ENSOKIG00005041985)	ENSOKIG00005042101	ENSOKIG00005042198
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000046431	ENSOMYG00000046437	alg13 (ENSOMYG00000046447)	dacha (ENSOMYG00000046464)	chm (ENSOMYG00000046491)	ENSOMYG00000046500	ENSOMYG00000046521	ENSOMYG00000046788	rtn3 (ENSOMYG00000047026)	ENSOMYG00000047033	ENSOMYG00000047045	ENSOMYG00000047058	ENSOMYG00000047068	ENSOMYG00000047089	ENSOMYG00000047152	ENSOMYG00000047252 ##22	ENSOMYG00000047258	ENSOMYG00000047260	rps14 (ENSOMYG00000047264)	ENSOMYG00000047276	rbm22 (ENSOMYG00000047284)	ENSOMYG00000047291	arl3l1 (ENSOMYG00000047301)	adra2db (ENSOMYG00000047303)	cnot6a (ENSOMYG00000047323)	ENSOMYG00000047514	zgc:123105 (ENSOMYG00000047584)	ENSOMYG00000047586	ENSOMYG00000047587	ENSOMYG00000044583	ENSOMYG00000047590
Salmo	ANCESTRAL SPECIES	18	ENSGT01060000248594.e.a.n.b.a	ENSGT00940000159922.a.a.a	ENSGT00390000001134.b.ab.i.a	ENSGT00950000182994.A	ENSGT00940000158972	ENSGT00940000157904.b.e.a	ENSGT00940000166658.a.g	ENSGT00940000157482.f.b.b	ENSGT00940000157424.m.a.b	ENSGT00390000006178.a	ENSGT00940000166125.a	ENSGT00940000155150.b.b.c	ENSGT00940000164078.a.b.a.a.b	ENSGT00940000157138.b.a	ENSGT00940000155506.f.a	ENSGT00940000156167.a.a ##22	ENSGT00390000001803.g	ENSGT00390000000002.a.a.b.i.a	ENSGT00390000007844.b.e.a	ENSGT00390000000703.bb	ENSGT00940000157857.i.a	ENSGT00390000002792.a.a	ENSGT00940000164577.a.d	ENSGT00940000166254.b.c	ENSGT00950000183177.a.a.a.a.h.f	ENSGT00940000164356.a.a	ENSGT00940000158978.a.b.c	ENSGT00940000156647.b.c	ENSGT00390000000537.y.c	ENSGT00950000183015.E.i.a	ENSGT00940000165778.d
River trout	MODERN SPECIES	10	alg13 (ENSSTUG00000036825)	dacha (ENSSTUG00000036846)	chm (ENSSTUG00000036884)	frmd7 (ENSSTUG00000036940)	stk26 (ENSSTUG00000036982)	map4k6 (ENSSTUG00000037448)	ENSSTUG00000039020	ENSSTUG00000039043	ndufa2 (ENSSTUG00000039064)	ENSSTUG00000039073	camk2a (ENSSTUG00000039085)	cdx1b (ENSSTUG00000039158)	ENSSTUG00000039175	CSF1R (ENSSTUG00000039586)	sra1 (ENSSTUG00000042471)	ENSSTUG00000042563 ##22	APBB3 (ENSSTUG00000042590)	ENSSTUG00000042754	rps14 (ENSSTUG00000042781)	ndst1b (ENSSTUG00000042906)	rbm22 (ENSSTUG00000043801)	arl3l1 (ENSSTUG00000043823)	ENSSTUG00000043835	ENSSTUG00000043853	adra2db (ENSSTUG00000043861)	cnot6a (ENSSTUG00000043879)	ADAMTS2 (ENSSTUG00000043954)	zgc:123105 (ENSSTUG00000044310)	ENSSTUG00000044318	ENSSTUG00000044342	ENSSTUG00000044410
Huchen	MODERN SPECIES	606									ENSHHUG00000019943	ndufa2 (ENSHHUG00000019928)	ENSHHUG00000019925	camk2a (ENSHHUG00000016663)	ENSHHUG00000016614	PDGFRB (ENSHHUG00000016586)	CSF1R (ENSHHUG00000015676)	ENSHHUG00000015646 ##22	sra1 (ENSHHUG00000015631)	APBB3 (ENSHHUG00000015568)	ENSHHUG00000015558	ENSHHUG00000015544	rps14 (ENSHHUG00000015513)	ndst1b (ENSHHUG00000015236)	rbm22 (ENSHHUG00000015201)	arl3l1 (ENSHHUG00000015194)	ENSHHUG00000015163	adra2db (ENSHHUG00000015155)
Salmoninae	ANCESTRAL SPECIES	290															ENSGT00940000155506.f.b	ENSGT00940000156167.a.b ##22	ENSGT00390000001803.h.a.b	ENSGT00390000001803.h.b	ENSGT00390000000002.a.a.b.i.b	ENSGT00390000007844.b.e.b	ENSGT00940000169140	ENSGT00390000000703.cb	ENSGT00940000157857.i.b	ENSGT00390000002792.a.b	ENSGT00950000183027.a.a.a	ENSGT00940000164577.a.c	ENSGT00940000166254.b.d	ENSGT00950000183177.a.a.a.a.h.e	ENSGT00940000164356.a.b	ENSGT00940000158978.a.b.d	ENSGT00940000156647.b.d
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT01060000248594.e.a.n.b.b	ENSGT00940000159922.a.a.b	ENSGT00390000001134.b.ab.j	ENSGT00940000157904.b.e.b	ENSGT00940000166658.a.h	ENSGT00940000157482.f.b.a	ENSGT00940000165810	ENSGT00940000157424.m.a.a	ENSGT00940000153727.b	ENSGT00390000006178.b	ENSGT01060000249180	ENSGT00940000166125.b	ENSGT00940000155150.b.b.d	ENSGT00940000164078.a.b.a.a.a	ENSGT00940000155506.f.b	ENSGT00940000156167.a.b ##22	ENSGT00390000001803.h.b	ENSGT00390000000002.a.a.b.i.b	ENSGT00390000007844.b.e.b	ENSGT00940000169140	ENSGT00390000000703.cb	ENSGT00940000157857.i.b	ENSGT00390000002792.a.b	ENSGT00950000183027.a.a.a	ENSGT00940000164577.a.c	ENSGT00940000166254.b.d	ENSGT00950000183177.a.a.a.a.h.e	ENSGT00940000164356.a.b	ENSGT00940000158978.a.b.d	ENSGT00940000156647.b.d	ENSGT00390000000537.y.d
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT01060000248594.e.a.n.b.b	ENSGT00940000159922.a.a.b	ENSGT00390000001134.b.ab.j	ENSGT00940000157904.b.e.b	ENSGT00940000166658.a.h	ENSGT00940000157482.f.b.a	ENSGT00940000165810	ENSGT00940000157424.m.a.a	ENSGT00940000153727.b	ENSGT00390000006178.b	ENSGT01060000249180	ENSGT00940000166125.b	ENSGT00940000155150.b.b.d	ENSGT00940000164078.a.b.a.a.a	ENSGT00940000155506.f.b	ENSGT00940000156167.a.b ##22	ENSGT00390000001803.h.a.a	ENSGT00390000000002.a.a.b.j	ENSGT00390000000002.a.a.b.i.b	ENSGT00390000007844.b.e.b	ENSGT00940000169140	ENSGT00390000000703.cb	ENSGT00940000157857.i.b	ENSGT00390000002792.a.b	ENSGT00950000183027.a.a.a	ENSGT00940000164577.a.c	ENSGT00950000183177.a.a.a.a.h.e	ENSGT00940000164356.a.b	ENSGT00940000158978.a.b.d	ENSGT00940000156647.b.d	ENSGT00390000000537.y.d
Rainbow trout	MODERN SPECIES	364	ENSOMYG00000045163	ENSOMYG00000051620	ENSOMYG00000060325	ENSOMYG00000045155	ENSOMYG00000045146	ENSOMYG00000075176	coro6 (ENSOMYG00000070043)	ENSOMYG00000045137	ssh2b (ENSOMYG00000045134)	ENSOMYG00000048947	nsrp1 (ENSOMYG00000049467)	ENSOMYG00000051902	ENSOMYG00000063823	ENSOMYG00000041026	ENSOMYG00000041192	ENSOMYG00000042627 ##22	ENSOMYG00000042636	ENSOMYG00000069946	ENSOMYG00000073758	cd74b (ENSOMYG00000042652)	rs14 (ENSOMYG00000042616)	ENSOMYG00000052514	ndst1b (ENSOMYG00000042693)	rbm22 (ENSOMYG00000042749)	ENSOMYG00000068917	arl3l1 (ENSOMYG00000042769)	ENSOMYG00000056029	ENSOMYG00000042825	adra2db (ENSOMYG00000042974)	ENSOMYG00000069637	cnot6a (ENSOMYG00000042989)
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT01060000248594.e.a.n.b.b	ENSGT00940000159922.a.a.b	ENSGT00390000001134.b.ab.i.b.a.b	ENSGT00940000157904.b.e.b	ENSGT00940000166658.a.h	ENSGT00940000157482.f.b.a	ENSGT00940000165810	ENSGT00940000157424.m.a.a	ENSGT00940000153727.b	ENSGT00390000006178.b	ENSGT01060000249180	ENSGT00940000166125.b	ENSGT00940000159769.a.b.v	ENSGT00940000164078.a.b.a.a.a	ENSGT00940000155506.f.b	ENSGT00940000156167.a.b ##22	ENSGT00390000001803.h.a.a	ENSGT00390000000002.a.a.b.i.b	ENSGT00390000007844.b.e.b	ENSGT00940000169140	ENSGT00390000000703.cb	ENSGT00940000157857.i.b	ENSGT00940000163701.b.a.a.a.b.a.a	ENSGT00940000163701.b.a.a.a.b.b	ENSGT00940000166282.B	ENSGT00940000160629.a.b	ENSGT00940000166176.h	ENSGT00940000158048.d.e	ENSGT00940000165390.b.c.a.d	ENSGT00940000165390.b.c.a.c	ENSGT00990000212312
Coho salmon	MODERN SPECIES	21	alg13 (ENSOKIG00005037929)	dacha (ENSOKIG00005037906)	ENSOKIG00005037236	ENSOKIG00005036655	ENSOKIG00005036554	ENSOKIG00005050448	ENSOKIG00005050440	ik (ENSOKIG00005050384)	ndufa2 (ENSOKIG00005050358)	ENSOKIG00005050335	ENSOKIG00005050328	ENSOKIG00005050326	ENSOKIG00005050312	cdx1b (ENSOKIG00005050303)	ENSOKIG00005050227	ENSOKIG00005050183 ##22	SRA1 (ENSOKIG00005050178)	APBB3 (ENSOKIG00005050169)	ENSOKIG00005050165	ENSOKIG00005050159	rps14 (ENSOKIG00005050146)	ENSOKIG00005050109	ENSOKIG00005050083	ugt5g2 (ENSOKIG00005050080)	tlx3b (ENSOKIG00005050076)	npm1a (ENSOKIG00005050064)	kcnip1b (ENSOKIG00005050048)	ENSOKIG00005050033	ENSOKIG00005050023	ENSOKIG00005050013	ENSOKIG00005050009
Chinook salmon	MODERN SPECIES	26	map4k6 (ENSOTSG00005005870)	ENSOTSG00005005868	ENSOTSG00005005865	ENSOTSG00005005863	ik (ENSOTSG00005005845)	ndufa2 (ENSOTSG00005005842)	ENSOTSG00005005838	ENSOTSG00005005837	ENSOTSG00005005835	ENSOTSG00005005832	ENSOTSG00005005830	ENSOTSG00005005827	cdx1b (ENSOTSG00005005825)	ENSOTSG00005004888	ENSOTSG00005004864	ENSOTSG00005004862 ##22	ENSOTSG00005004861	ENSOTSG00005004859	ENSOTSG00005004858	ENSOTSG00005004857	ENSOTSG00005004856	rps14 (ENSOTSG00005004853)	ndst1b (ENSOTSG00005003121)	ENSOTSG00005003090	ENSOTSG00005003086	ugt5g2 (ENSOTSG00005003083)	tlx3b (ENSOTSG00005003081)	npm1a (ENSOTSG00005003077)	kcnip1b (ENSOTSG00005003070)	ENSOTSG00005003066	ENSOTSG00005003064
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000159922.a.a.b	ENSGT00390000001134.b.ab.j	ENSGT00940000157904.b.e.b	ENSGT00940000166658.a.h	ENSGT00940000157482.f.b.a	ENSGT00940000165810	ENSGT00940000157424.m.a.a	ENSGT00940000153727.b	ENSGT00390000006178.b	ENSGT01060000249180	ENSGT00940000166125.b	ENSGT00940000155150.b.b.d	ENSGT00940000164078.a.b.a.a.a	ENSGT00940000157138.b.b	ENSGT00940000155506.f.b	ENSGT00940000156167.a.b ##22	ENSGT00390000001803.h.b	ENSGT00390000000002.a.a.b.i.b	ENSGT00390000007844.b.e.b	ENSGT00940000169140	ENSGT00390000000703.cb	ENSGT00940000157857.i.b	ENSGT00390000002792.a.b	ENSGT00950000183027.a.a.a	ENSGT00940000164577.a.c	ENSGT00940000166254.b.d	ENSGT00950000183177.a.a.a.a.h.e	ENSGT00940000164356.a.b	ENSGT00940000158978.a.b.d	ENSGT00940000156647.b.d	ENSGT00390000000537.y.d
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000046622	ENSSSAG00000047138	ENSSSAG00000047159	ENSSSAG00000047255	ENSSSAG00000094745	ENSSSAG00000047282	NDUA2 (ENSSSAG00000047339)	ENSSSAG00000047345	ENSSSAG00000120268	CAMK2A (ENSSSAG00000047455)	ENSSSAG00000087278	ENSSSAG00000111654	ENSSSAG00000061309	CSF1R (ENSSSAG00000061479)	SRA1 (ENSSSAG00000062625)	ENSSSAG00000062603 ##22	ENSSSAG00000062677	ENSSSAG00000001517	ENSSSAG00000062736	rps14 (ENSSSAG00000062741)	ndst1b (ENSSSAG00000062825)	rbm22 (ENSSSAG00000065075)	ENSSSAG00000065087	arl3l1 (ENSSSAG00000065099)	ENSSSAG00000065109	ENSSSAG00000065132	cnot6a (ENSSSAG00000110728)	ENSSSAG00000065664	zgc:123105 (ENSSSAG00000065739)	gfpt2 (ENSSSAG00000065788)	ENSSSAG00000068679
River trout	MODERN SPECIES	3	alg13 (ENSSTUG00000018797)	ENSSTUG00000018822	stk26 (ENSSTUG00000018843)	map4k6 (ENSSTUG00000019157)	ENSSTUG00000019434	ENSSTUG00000019500	ENSSTUG00000019653	ik (ENSSTUG00000019692)	ndufa2 (ENSSTUG00000019964)	ENSSTUG00000019978	ENSSTUG00000020030	CAMK2A (ENSSTUG00000020321)	ENSSTUG00000024926	cdx1b (ENSSTUG00000024936)	ENSSTUG00000024980	ENSSTUG00000025816 ##22	sra1 (ENSSTUG00000025823)	APBB3 (ENSSTUG00000025833)	ENSSTUG00000025870	ENSSTUG00000025887	rps14 (ENSSTUG00000025947)	ndst1b (ENSSTUG00000026014)	ENSSTUG00000026552	rbm22 (ENSSTUG00000026558)	ENSSTUG00000026591	arl3l1 (ENSSTUG00000026616)	ENSSTUG00000026630	SLC34A1 (ENSSTUG00000026693)	adra2db (ENSSTUG00000026925)	cnot6a (ENSSTUG00000026939)	ENSSTUG00000027153
Huchen	MODERN SPECIES	814															ENSHHUG00000049687	ENSHHUG00000049660 ##22	ENSHHUG00000049651	APBB3 (ENSHHUG00000049638)	ENSHHUG00000049637	ENSHHUG00000049624	rps14 (ENSHHUG00000049611)	ndst1b (ENSHHUG00000049584)	rbm22 (ENSHHUG00000049572)	ENSHHUG00000049571	arl3l1 (ENSHHUG00000049570)	ENSHHUG00000049568	ENSHHUG00000049566	SLC34A1 (ENSHHUG00000049559)	adra2db (ENSHHUG00000049557)	ENSHHUG00000049556	ENSHHUG00000049552
Northern pike	MODERN SPECIES	6	map4k6 (ENSELUG00000004292)	ENSELUG00000004236	ENSELUG00000004192	ENSELUG00000034155	ENSELUG00000004168	ik (ENSELUG00000004120)	ndufa2 (ENSELUG00000034535)	ENSELUG00000004055	ENSELUG00000026627	camk2a (ENSELUG00000004019)	ENSELUG00000032141	ENSELUG00000027186	cdx1b (ENSELUG00000024354)	ENSELUG00000024474	CSF1R (ENSELUG00000024581)	ENSELUG00000028975 ##22	sra1 (ENSELUG00000004809)	APBB3 (ENSELUG00000004820)	ENSELUG00000004837	ENSELUG00000004849	rps14 (ENSELUG00000031410)	ndst1b (ENSELUG00000004939)	ENSELUG00000003915	arl3l1 (ENSELUG00000003904)	ENSELUG00000003882	ENSELUG00000029537	SLC34A1 (ENSELUG00000003849)	SLC34A1 (ENSELUG00000024938)	adra2db (ENSELUG00000003833)	cnot6a (ENSELUG00000024580)	ADAMTS2 (ENSELUG00000024520)
Acanthomorphata	ANCESTRAL SPECIES	196																ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a	ENSGT01030000234555.b
Euacanthomorphacea	ANCESTRAL SPECIES	26	ENSGT01030000234765	ENSGT00940000159870	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a	ENSGT01030000234555.b
Percomorphaceae	ANCESTRAL SPECIES	55	ENSGT00940000164013	ENSGT00940000159870	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a	ENSGT01030000234555.b
Tiger tail seahorse	MODERN SPECIES	514	ENSHCOG00000004479	sypa (ENSHCOG00000004501)	cacna1fb (ENSHCOG00000010548)	cdk20 (ENSHCOG00000010897)	ENSHCOG00000010920	CXXC1 (ENSHCOG00000011061)	ENSHCOG00000011210	FGD1 (ENSHCOG00000011257)	ENSHCOG00000011281	ACAP3 (ENSHCOG00000011504)	ENSHCOG00000011542	ENSHCOG00000011593	rfc2 (ENSHCOG00000011613)	USP11 (ENSHCOG00000011722)	zgc:86609 (ENSHCOG00000011756)	ENSHCOG00000011814 ##22	ENSHCOG00000011826	ENSHCOG00000011862
Percomorphaceae_B	ANCESTRAL SPECIES	22	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Percomorphaceae_C	ANCESTRAL SPECIES	23	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT01060000248909	ENSGT01060000248713	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b
Eupercaria	ANCESTRAL SPECIES	23	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b
Tetraodontidae	ANCESTRAL SPECIES	22	ENSGT00390000016929	ENSGT00940000155466.e.a	ENSGT00940000159870	ENSGT00940000159602	ENSGT00690000103830	ENSGT00940000159255	ENSGT00390000000447	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365.k	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00940000164706.a	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a	ENSGT01030000234555.b	ENSGT00940000166665	ENSGT00940000153309	ENSGT00390000016794.d
Tetraodon	MODERN SPECIES	18	HECW2 (ENSTNIG00000013257)	ENSTNIG00000013256	ENSTNIG00000013255	runx1 (ENSTNIG00000018690)	ENSTNIG00000008302	chn1 (ENSTNIG00000008303)	ENSTNIG00000008304	FARP1 (ENSTNIG00000008305)	ggact.3 (ENSTNIG00000000384)	arl13b (ENSTNIG00000008306)	NCAM2 (ENSTNIG00000008307)	gart (ENSTNIG00000008308)	n6amt1 (ENSTNIG00000008309)	ENSTNIG00000001311	ENSTNIG00000001235	ENSTNIG00000001430 ##22	cbsa (ENSTNIG00000008310)	u2af1 (ENSTNIG00000008311)	zgc:172122 (ENSTNIG00000008312)	ENSTNIG00000001234	gemin8 (ENSTNIG00000001453)	ENSTNIG00000008313 ##27	RAB9A (ENSTNIG00000001956)	TCEANC (ENSTNIG00000000978)	PRPS2 (ENSTNIG00000008314)	ENSTNIG00000008315	aamp (ENSTNIG00000008316)	ENSTNIG00000000457	ENSTNIG00000008317	ENSTNIG00000008318	arpc2 (ENSTNIG00000008319)
Fugu	MODERN SPECIES	20	ENSTRUG00000012478	ENSTRUG00000033438	runx1 (ENSTRUG00000012611)	ENSTRUG00000012751	chn1 (ENSTRUG00000012830)	FARP1 (ENSTRUG00000012915)	ggact.3 (ENSTRUG00000013029)	arl13b (ENSTRUG00000013035)	ENSTRUG00000027813	NCAM2 (ENSTRUG00000013097)	n6amt1 (ENSTRUG00000013586)	ENSTRUG00000013620	ENSTRUG00000028009	ENSTRUG00000032340	ENSTRUG00000023883	ENSTRUG00000013644 ##22	ENSTRUG00000013705	cbsa (ENSTRUG00000013728)	u2af1 (ENSTRUG00000013815)	ENSTRUG00000013871	ENSTRUG00000013877	gemin8 (ENSTRUG00000022129)	ENSTRUG00000013892 ##27	rab9a (ENSTRUG00000013963)	ENSTRUG00000013966	PRPS2 (ENSTRUG00000013967)	ENSTRUG00000014035	aamp (ENSTRUG00000014278)	ENSTRUG00000014320	ENSTRUG00000030023	ENSTRUG00000030729
Eupecaria_A	ANCESTRAL SPECIES	23	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b
Ballan wrasse	MODERN SPECIES	775															pomca (ENSLBEG00000025105)	ENSLBEG00000025085 ##22	ENSLBEG00000025025	cbsa (ENSLBEG00000024961)	u2af1 (ENSLBEG00000024932)	ENSLBEG00000024913	ENSLBEG00000024886	zgc:172122 (ENSLBEG00000024860)	ENSLBEG00000024844	ENSLBEG00000024829	ENSLBEG00000024819	ENSLBEG00000024796
Eupecaria_B	ANCESTRAL SPECIES	23	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000159144.A.f	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Perciformes	ANCESTRAL SPECIES	24	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b	ENSGT00530000063480.a	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a.i	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Perciformes_a	ANCESTRAL SPECIES	25	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b	ENSGT00530000063480.a	ENSGT00940000164501.a.a.b.a	ENSGT00940000163494.a.b.a	ENSGT00940000164501.a.a.a.a.b	ENSGT00940000164501.a.a.a.a.a	ENSGT00940000163149.a.a.i	ENSGT00940000163322.a.a.b	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Channel bull blenny	MODERN SPECIES	11	ENSCGOG00000003153	fam184aa (ENSCGOG00000002863)	ENSCGOG00000002835	SATB2 (ENSCGOG00000002805)	ENSCGOG00000002782	ENSCGOG00000002642	ENSCGOG00000021794	ENSCGOG00000021792	ENSCGOG00000021791	ENSCGOG00000021789	ENSCGOG00000021784	crygs3 (ENSCGOG00000021758)	etv5b (ENSCGOG00000021730)	ENSCGOG00000021729	stoml2 (ENSCGOG00000021682)	ENSCGOG00000021670 ##22	ENSCGOG00000021665	cbsa (ENSCGOG00000021085)	u2af1 (ENSCGOG00000021056)	ENSCGOG00000021054	ENSCGOG00000021053	zgc:172122 (ENSCGOG00000021051)	ENSCGOG00000021045	ENSCGOG00000021044	ENSCGOG00000021043	gemin8 (ENSCGOG00000021040)	ENSCGOG00000020996 ##27	rab9a (ENSCGOG00000020992)	ENSCGOG00000020991	ENSCGOG00000020989	ENSCGOG00000020657
Pike perch	MODERN SPECIES	9	ENSSLUG00000013332	ENSSLUG00000013321	fam184aa (ENSSLUG00000013307)	ENSSLUG00000013247	SATB2 (ENSSLUG00000013227)	ENSSLUG00000013211	crygm6 (ENSSLUG00000013185)	CRYGS (ENSSLUG00000013147)	ENSSLUG00000013133	ENSSLUG00000013131	ENSSLUG00000013127	ENSSLUG00000013121	ENSSLUG00000013106	ENSSLUG00000013075	stoml2 (ENSSLUG00000012763)	ENSSLUG00000012732 ##22	ENSSLUG00000012724	cbsa (ENSSLUG00000010237)	u2af1 (ENSSLUG00000010132)	zgc:172122 (ENSSLUG00000010125)	ENSSLUG00000010118	ENSSLUG00000010108	efhc1 (ENSSLUG00000010100)	ENSSLUG00000010095	gemin8 (ENSSLUG00000010089)	ENSSLUG00000010085 ##27	rab9a (ENSSLUG00000010084)	TCEANC (ENSSLUG00000010080)	ENSSLUG00000010071	ENSSLUG00000010060	HDAC4 (ENSSLUG00000009515)
Cottioidei	ANCESTRAL SPECIES	24	ENSGT00940000159196	ENSGT00940000154443.e	ENSGT00940000161679.b	ENSGT00940000158367	ENSGT00950000183302	ENSGT00390000002403	ENSGT00530000063669.b.b	ENSGT00940000165242.d	ENSGT00390000008096.B.e.b	ENSGT00530000063480.a	ENSGT00940000163494.a.b.a	ENSGT00940000163148.a.b.a	ENSGT00940000163494.a.a.c.a.d	ENSGT00940000165279.d	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01100000263663	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Lumpfish	MODERN SPECIES	11	ENSCLMG00005012182	SLC5A3 (ENSCLMG00005013268)	ENSCLMG00005013271	ENSCLMG00005013275	ENSCLMG00005013276	fam184aa (ENSCLMG00005013277)	ENSCLMG00005013515	SATB2 (ENSCLMG00005013536)	ENSCLMG00005013556	ENSCLMG00005013559	ENSCLMG00005013573	ENSCLMG00005013574	ENSCLMG00005013576	ENSCLMG00005013590	STOML2 (ENSCLMG00005013597)	ENSCLMG00005013667 ##22	ENSCLMG00005013670	cbsa (ENSCLMG00005013676)	U2AF1 (ENSCLMG00005015124)	zgc:172122 (ENSCLMG00005015130)	ENSCLMG00005015134	ENSCLMG00005015136	ENSCLMG00005015138	gemin8 (ENSCLMG00005015141)	ENSCLMG00005015142 ##27	RAB9A (ENSCLMG00005015144)	TCEANC (ENSCLMG00005015145)	ENSCLMG00005015148	ENSCLMG00005015149	HDAC4 (ENSCLMG00005015160)	aamp (ENSCLMG00005016669)
Stickleback	MODERN SPECIES		SEMA5B (ENSGACG00000014799)	CACNB4 (ENSGACG00000014790)	UNC80 (ENSGACG00000014773)	ENSGACG00000014770	acadl (ENSGACG00000014754)	ENSGACG00000014752	lancl1 (ENSGACG00000014735)	erbb4a (ENSGACG00000014727)	RAMP1 (ENSGACG00000014723)	si:ch211-93g23.2 (ENSGACG00000014722)	klf7a (ENSGACG00000014720)	CREB1 (ENSGACG00000014712)	mettl21a (ENSGACG00000014709)	CYP4F8 (ENSGACG00000014669)	stoml2 (ENSGACG00000014645)	ENSGACG00000014643 ##22	ENSGACG00000014641	cbsa (ENSGACG00000014627)	u2af1 (ENSGACG00000014605)	ENSGACG00000014601	zgc:172122 (ENSGACG00000014600)	ENSGACG00000014598	ENSGACG00000014596	ENSGACG00000014595	gemin8 (ENSGACG00000014592)	ENSGACG00000014580 ##27	rab9a (ENSGACG00000014578)	ENSGACG00000014576	ENSGACG00000014573	ENSGACG00000014564	aamp (ENSGACG00000014546)
Eupecaria_C	ANCESTRAL SPECIES	30	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Gilthead seabream	MODERN SPECIES	16	cyp20a1 (ENSSAUG00010023306)	abi2b (ENSSAUG00010023257)	ENSSAUG00010023249	chn1 (ENSSAUG00010022436)	FARP1 (ENSSAUG00010022320)	ggact.3 (ENSSAUG00010022301)	arl13b (ENSSAUG00010022298)	NCAM2 (ENSSAUG00010022207)	gart (ENSSAUG00010020550)	n6amt1 (ENSSAUG00010020507)	ENSSAUG00010020505	ENSSAUG00010020502	ENSSAUG00010020500	ENSSAUG00010020499	ENSSAUG00010020497	ENSSAUG00010020496 ##22	ENSSAUG00010020492	cbsa (ENSSAUG00010020410)	u2af1 (ENSSAUG00010020404)	ENSSAUG00010020401	ENSSAUG00010020399	ENSSAUG00010020398	ENSSAUG00010020395	ENSSAUG00010020394	ENSSAUG00010020393	ENSSAUG00010020390	ENSSAUG00010020389	ENSSAUG00010020388	ENSSAUG00010020387	ENSSAUG00010020385	ENSSAUG00010020384
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	41	ENSGT00390000005596.a	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a.t	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Large yellow croaker	MODERN SPECIES	58										n6amt1 (ENSLCRG00005006202)	ENSLCRG00005006201	ENSLCRG00005006199	ENSLCRG00005006198	ENSLCRG00005006196	stoml2 (ENSLCRG00005005995)	ENSLCRG00005005987 ##22	ENSLCRG00005005986	cbsa (ENSLCRG00005004246)	u2af1 (ENSLCRG00005004222)	ENSLCRG00005004221	zgc:172122 (ENSLCRG00005004216)	ENSLCRG00005004215	ENSLCRG00005004212	ENSLCRG00005004211	ENSLCRG00005004208	ENSLCRG00005004204	ENSLCRG00005004203	ENSLCRG00005004202	ENSLCRG00005004201	ENSLCRG00005004200	ENSLCRG00005004199
European seabass	MODERN SPECIES	15	jagn1b (ENSDLAG00005008710)	ENSDLAG00005008723	ENSDLAG00005008856	ENSDLAG00005008866	ENSDLAG00005033899	ENSDLAG00005034796	ENSDLAG00005008916	ENSDLAG00005009274	ENSDLAG00005031513	ENSDLAG00005009709	ENSDLAG00005010799	ENSDLAG00005033679	ENSDLAG00005033305	ENSDLAG00005011003	ENSDLAG00005011017	ENSDLAG00005033045 ##22	ENSDLAG00005011150	ENSDLAG00005011180	ENSDLAG00005011704	ENSDLAG00005011723	ENSDLAG00005011736	ENSDLAG00005027696	ENSDLAG00005033514	ENSDLAG00005004941	ENSDLAG00005011744	ENSDLAG00005018414	ENSDLAG00005004050	ENSDLAG00005011975	ENSDLAG00005002640	ENSDLAG00005030255	ENSDLAG00005029481
Percomorphaceae_D	ANCESTRAL SPECIES	23	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT01060000248909	ENSGT01060000248713	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b
Anabantaria	ANCESTRAL SPECIES	14	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT01060000248909	ENSGT01060000248713	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00950000182803.B.d.b
Anabantoidei	ANCESTRAL SPECIES	23	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b.d	ENSGT01050000244823.d.b.a.b.c	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT01060000248909	ENSGT00530000063970.f	ENSGT01060000248713	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01060000248750	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b
Climbing perch	MODERN SPECIES	11	ENSATEG00000028401	ENSATEG00000027904	ENSATEG00000017447	ENSATEG00000017469	ENSATEG00000017488	ENSATEG00000017546	ENSATEG00000017576	ENSATEG00000017586	ENSATEG00000017631	ENSATEG00000017677	ENSATEG00000029365	ENSATEG00000017819	ENSATEG00000017804	ENSATEG00000017836	ENSATEG00000017845	ENSATEG00000017868 ##22	ENSATEG00000026286	ENSATEG00000017884	ENSATEG00000017931	ENSATEG00000017936	ENSATEG00000017998	ENSATEG00000018188	ENSATEG00000026900	ENSATEG00000026773	ENSATEG00000029293	ENSATEG00000026939	ENSATEG00000018131	ENSATEG00000018117	ENSATEG00000028758	ENSATEG00000026873	ENSATEG00000018220
Siamese fighting fish	MODERN SPECIES	10	FARP1 (ENSBSLG00000001406)	ggact.3 (ENSBSLG00000001512)	arl13b (ENSBSLG00000001516)	ENSBSLG00000001576	gart (ENSBSLG00000002276)	n6amt1 (ENSBSLG00000002587)	ENSBSLG00000002591	ENSBSLG00000002596	ENSBSLG00000002600	ENSBSLG00000002606	ENSBSLG00000002614	ENSBSLG00000002621	ENSBSLG00000002631	ENSBSLG00000002641	ENSBSLG00000002649	ENSBSLG00000002652 ##22	ENSBSLG00000002665	cbsa (ENSBSLG00000002783)	u2af1 (ENSBSLG00000003093)	ENSBSLG00000003096	ENSBSLG00000003583	ENSBSLG00000003600	ENSBSLG00000003630	ENSBSLG00000003686	ENSBSLG00000003702	ENSBSLG00000003715	ENSBSLG00000003735	ENSBSLG00000003753	ENSBSLG00000003818	ENSBSLG00000003872	ENSBSLG00000003887
Zig-zag eel	MODERN SPECIES	11	ENSMAMG00000022082	ENSMAMG00000022070	ENSMAMG00000022065	ENSMAMG00000022055	ENSMAMG00000022052	ENSMAMG00000022048	ENSMAMG00000024548	ENSMAMG00000022041	ENSMAMG00000022033	ENSMAMG00000022027	ENSMAMG00000026438	ENSMAMG00000022028	ENSMAMG00000026122	ENSMAMG00000022029	ENSMAMG00000022022	ENSMAMG00000022018 ##22	ENSMAMG00000022014	ENSMAMG00000022007	ENSMAMG00000022001	ENSMAMG00000021999	ENSMAMG00000021995	ENSMAMG00000026683	ENSMAMG00000021992	ENSMAMG00000021991	ENSMAMG00000021990	ENSMAMG00000021985 ##27	ENSMAMG00000028582	ENSMAMG00000021982	ENSMAMG00000021977	ENSMAMG00000021971	ENSMAMG00000021963
Carangaria	ANCESTRAL SPECIES	23	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a
Carangaria_A	ANCESTRAL SPECIES	23	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT00940000159144.B	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.g	ENSGT00530000063970.f.h	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b
Seriola	ANCESTRAL SPECIES	44	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.g.a.a	ENSGT00530000063970.f.h	ENSGT00530000063970.f.g.b	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b
Greater amberjack	MODERN SPECIES	180								chn1 (ENSSDUG00000005739)	FARP1 (ENSSDUG00000005596)	ggact.3 (ENSSDUG00000005580)	arl13b (ENSSDUG00000005560)	NCAM2 (ENSSDUG00000005493)	gart (ENSSDUG00000005374)	n6amt1 (ENSSDUG00000005324)	stoml2 (ENSSDUG00000005298)	ENSSDUG00000005283 ##22	ENSSDUG00000005242	cbsa (ENSSDUG00000005197)	u2af1 (ENSSDUG00000005186)	ENSSDUG00000005165	zgc:172122 (ENSSDUG00000005152)	ENSSDUG00000005140	ENSSDUG00000005133	ENSSDUG00000005111	ENSSDUG00000005088	ENSSDUG00000005076	gemin8 (ENSSDUG00000005069)	gpm6ba (ENSSDUG00000005058) ##27	rab9a (ENSSDUG00000005037)	TCEANC (ENSSDUG00000005029)	tmsb4x (ENSSDUG00000005016)
Yellowtail amberjack	MODERN SPECIES	3005	acadl (ENSSLDG00000005722)	ENSSLDG00000005658	UNC80 (ENSSLDG00000005477)	gpd1c (ENSSLDG00000005420)	OSBPL11 (ENSSLDG00000005371)	ENSSLDG00000005335	ENSSLDG00000005306	LYPD1 (ENSSLDG00000005291)	actr3 (ENSSLDG00000005231)	ENSSLDG00000005209	pou3f3b (ENSSLDG00000005195)	mrps9 (ENSSLDG00000005169)	ENSSLDG00000005141	ENSSLDG00000004979	stoml2 (ENSSLDG00000004916)	ENSSLDG00000004890 ##22	ENSSLDG00000004843	cbsa (ENSSLDG00000004764)	u2af1 (ENSSLDG00000004576)	ENSSLDG00000004551	zgc:172122 (ENSSLDG00000004531)	ENSSLDG00000004521	ENSSLDG00000004505	ENSSLDG00000004486	ENSSLDG00000004469	gemin8 (ENSSLDG00000004417)	gpm6ba (ENSSLDG00000004387) ##27	rab9a (ENSSLDG00000004352)	TCEANC (ENSSLDG00000004330)	tmsb4x (ENSSLDG00000004315)	ENSSLDG00000004279
Barramundi perch	MODERN SPECIES	165												n6amt1 (ENSLCAG00010021353)	ENSLCAG00010021350	ENSLCAG00010021348	stoml2 (ENSLCAG00010021339)	ENSLCAG00010021337 ##22	ENSLCAG00010021335	cbsa (ENSLCAG00010021198)	u2af1 (ENSLCAG00010021177)	ENSLCAG00010021176	zgc:172122 (ENSLCAG00010021175)	ENSLCAG00010021174	ENSLCAG00010021173	ENSLCAG00010021172	ENSLCAG00010021171	ENSLCAG00010021167	ENSLCAG00010021163	gemin8 (ENSLCAG00010021161)	ENSLCAG00010021159 ##27	rab9a (ENSLCAG00010021156)	TCEANC (ENSLCAG00010021155)
Pleuronectoidei	ANCESTRAL SPECIES	62	ENSGT00940000158272.c.a	ENSGT00390000005596.a	ENSGT00940000153695.B	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00390000005130	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT01100000263663	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b	ENSGT00940000153648.a	ENSGT01030000234555.b
Turbot	MODERN SPECIES		ENSSMAG00000015752	ENSSMAG00000015714	ENSSMAG00000015740	ENSSMAG00000028514	ENSSMAG00000015699	ENSSMAG00000015691	ENSSMAG00000015648	ENSSMAG00000015522	ENSSMAG00000015508	ENSSMAG00000015450	ENSSMAG00000015271	ENSSMAG00000015184	ENSSMAG00000015250	ENSSMAG00000015160	ENSSMAG00000015150	ENSSMAG00000015146 ##22	ENSSMAG00000013794	ENSSMAG00000013849	ENSSMAG00000013890	ENSSMAG00000037353	ENSSMAG00000013923	ENSSMAG00000013955	ENSSMAG00000014019	ENSSMAG00000014038 ##27	ENSSMAG00000014078	ENSSMAG00000036683	ENSSMAG00000014091	ENSSMAG00000014104	ENSSMAG00000014149	ENSSMAG00000014439	ENSSMAG00000014634
Tongue sole	MODERN SPECIES	5	ENSCSEG00000001283	ENSCSEG00000001280	ENSCSEG00000001278	stom (ENSCSEG00000001276)	gsna (ENSCSEG00000001258)	ppp2r2ab (ENSCSEG00000001252)	bnip3lb (ENSCSEG00000001249)	dpysl2b (ENSCSEG00000001228)	ENSCSEG00000001221	tmem230a (ENSCSEG00000001217)	ENSCSEG00000001209	LRRTM4 (ENSCSEG00000001196)	DGKZ (ENSCSEG00000001180)	cryaa (ENSCSEG00000001151)	ENSCSEG00000001148	ENSCSEG00000001143 ##22	ENSCSEG00000001137	cbsa (ENSCSEG00000001129)	u2af1 (ENSCSEG00000001122)	zgc:172122 (ENSCSEG00000001113)	ENSCSEG00000001111	JAGN1 (ENSCSEG00000001103)	FAM171B (ENSCSEG00000001098)	ENSCSEG00000001091	ENSCSEG00000001088	ENSCSEG00000001086	ATP1A1 (ENSCSEG00000001076)	ENSCSEG00000001070	ENSCSEG00000001057	rpgrb (ENSCSEG00000001033)	si:ch211-114n24.6 (ENSCSEG00000001027)
Ovalentaria	ANCESTRAL SPECIES	23	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.f	ENSGT00940000159144.A.e.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT01060000248713	ENSGT00530000063970.f.eb	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b
Atherinomorphae	ANCESTRAL SPECIES	48							ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT01060000248713	ENSGT00530000063970.f.db.b	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b
Cyprinodontiformes	ANCESTRAL SPECIES	25							ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT01060000248713	ENSGT00530000063970.f.db.b	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b
Aplocheiloidei	ANCESTRAL SPECIES	37									ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.b	ENSGT00530000063970.f.db.a	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b
Mangrove rivulus	MODERN SPECIES	157									chn1 (ENSKMAG00000001169)	FARP1 (ENSKMAG00000001141)	ggact.3 (ENSKMAG00000001131)	arl13b (ENSKMAG00000001122)	NCAM2 (ENSKMAG00000001037)	gart (ENSKMAG00000000925)	n6amt1 (ENSKMAG00000000880)	ENSKMAG00000000870 ##22	ENSKMAG00000000861	ENSKMAG00000000774	cbsa (ENSKMAG00000000697)	u2af1 (ENSKMAG00000000639)	ENSKMAG00000000626	sc:d189 (ENSKMAG00000000615)	ENSKMAG00000000586	dapp1 (ENSKMAG00000000532)	lamtor3 (ENSKMAG00000000505)	dio2 (ENSKMAG00000000483)	ENSKMAG00000000438	nrxn3a (ENSKMAG00000000357)
Turquoise killifish	MODERN SPECIES	1615	tmem47 (ENSNFUG00015006165)	ENSNFUG00015006160	ENSNFUG00015006157	FARP1 (ENSNFUG00015006103)	CHN1 (ENSNFUG00015005845)	ggact.3 (ENSNFUG00015005825)	arl13b (ENSNFUG00015005821)	ENSNFUG00015005819	ENSNFUG00015005815	ENSNFUG00015005814	ENSNFUG00015005808	NCAM2 (ENSNFUG00015005740)	ENSNFUG00015024739	gart (ENSNFUG00015024733)	n6amt1 (ENSNFUG00015024729)	ENSNFUG00015024724 ##22	ccng1 (ENSNFUG00015024718)	ENSNFUG00015024716	CBS (ENSNFUG00015024685)	U2AF1 (ENSNFUG00015024683)	ENSNFUG00015024681	CD200 (ENSNFUG00015024678)	ENSNFUG00015024677	ENSNFUG00015024676	GEMIN8 (ENSNFUG00015024675)	GPM6B (ENSNFUG00015024671) ##27	rab9a (ENSNFUG00015024669)	ENSNFUG00015024668	ENSNFUG00015024666	OLA.15958 (ENSNFUG00015024660)	ENSNFUG00015024658
Cyprinodontoidei	ANCESTRAL SPECIES	79							ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a.e.b	ENSGT00530000063970.f.db.b	ENSGT00530000063970.f.db.a.e.a	ENSGT01060000248713
Poeciliinae	ANCESTRAL SPECIES	23	ENSGT00530000063779.A.e.b	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.b.e	ENSGT00530000063970.f.db.b.f	ENSGT00530000063970.f.db.a.e.a	ENSGT01060000248713.b	ENSGT01060000248713.a	ENSGT00940000155021	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d
Poecilia	ANCESTRAL SPECIES	45	ENSGT00530000063779.A.e.b	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000155232.t.b.a	ENSGT00940000153931.b.b.c	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a.e.b	ENSGT01060000248713.b	ENSGT01060000248713.a	ENSGT00530000063970.f.db.b.e	ENSGT00530000063970.f.db.b.f	ENSGT00530000063970.f.db.a.e.a
NAME_6	ANCESTRAL SPECIES	126	ENSGT00950000183072.b.b.b	ENSGT00530000063779.A.e.b	ENSGT00940000156219.e.b	ENSGT00940000157564	ENSGT00940000158665.d	ENSGT00550000074800.a.b	ENSGT00940000163195.B.a	ENSGT00940000158859.f	ENSGT01030000234621.F.c	ENSGT00950000183071.a.a.a.e.b	ENSGT00940000156862	ENSGT00940000155232.t.a.b.b	ENSGT00940000166422	ENSGT00940000153931.b.b.c	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a.e.b
Amazon molly	MODERN SPECIES	425	CSRNP3 (ENSPFOG00000009847)	XIRP2 (ENSPFOG00000009897)	B3GALT1 (ENSPFOG00000020714)	ABCB11 (ENSPFOG00000010059)	ENSPFOG00000010942	atp5f1b (ENSPFOG00000010978)	ENSPFOG00000011040	klhl41b (ENSPFOG00000011375)	oxgr1a.2 (ENSPFOG00000011412)	HS6ST3 (ENSPFOG00000011414)	dzip1 (ENSPFOG00000011430)	ENSPFOG00000011477	ENSPFOG00000011516	abcc4 (ENSPFOG00000011529)	ENSPFOG00000020715	ENSPFOG00000011531 ##22	ENSPFOG00000011561	cbsa (ENSPFOG00000011625)	u2af1 (ENSPFOG00000011771)	ENSPFOG00000011788	zgc:172122 (ENSPFOG00000011797)	ENSPFOG00000022005	ENSPFOG00000023538	ENSPFOG00000024789	ENSPFOG00000011819
Sailfin molly	MODERN SPECIES	987										ENSPLAG00000024006	dzip1 (ENSPLAG00000024007)	ENSPLAG00000024008	ENSPLAG00000024009	abcc4 (ENSPLAG00000024010)	ENSPLAG00000024011	ENSPLAG00000024012 ##22	ENSPLAG00000024013	cbsa (ENSPLAG00000024014)	u2af1 (ENSPLAG00000024015)	ENSPLAG00000024016	zgc:172122 (ENSPLAG00000024017)	ENSPLAG00000024018	ENSPLAG00000024019
Guppy	MODERN SPECIES	450	B3GALT1 (ENSPREG00000013408)	ABCB11 (ENSPREG00000013322)	DHRS9 (ENSPREG00000013296)	atp5f1b (ENSPREG00000013275)	ENSPREG00000013248	klhl41b (ENSPREG00000013210)	ENSPREG00000013193	HS6ST3 (ENSPREG00000013183)	ENSPREG00000013164	ENSPREG00000013143	ENSPREG00000013127	cldn10a (ENSPREG00000013121)	abcc4 (ENSPREG00000013080)	ENSPREG00000013066	ENSPREG00000013059	ENSPREG00000013045 ##22	ENSPREG00000013023	cbsa (ENSPREG00000012990)	u2af1 (ENSPREG00000012953)	ENSPREG00000012936	zgc:172122 (ENSPREG00000012927)	ENSPREG00000012914	ENSPREG00000012877	ENSPREG00000012864	ENSPREG00000012850	ENSPREG00000012838	ENSPREG00000012830	ENSPREG00000012813	ENSPREG00000012805	ENSPREG00000012794	ENSPREG00000012788
Platyfish	MODERN SPECIES	16	ENSXMAG00000021141	XIRP2 (ENSXMAG00000013887)	B3GALT1 (ENSXMAG00000019775)	ABCB11 (ENSXMAG00000013890)	DHRS9 (ENSXMAG00000013915)	atp5f1b (ENSXMAG00000013918)	ENSXMAG00000013936	klhl41b (ENSXMAG00000013970)	oxgr1a.2 (ENSXMAG00000028642)	ENSXMAG00000013979	dzip1 (ENSXMAG00000013980)	ENSXMAG00000030015	ENSXMAG00000029026	cldn10a (ENSXMAG00000013996)	abcc4 (ENSXMAG00000005753)	ENSXMAG00000022345 ##22	ENSXMAG00000025680	cbsa (ENSXMAG00000008139)	u2af1 (ENSXMAG00000008127)	ENSXMAG00000025203	sc:d189 (ENSXMAG00000026119)	ENSXMAG00000024771	ENSXMAG00000025398	ENSXMAG00000017697	ENSXMAG00000022323	ENSXMAG00000027886	ENSXMAG00000021718	ENSXMAG00000022121	ENSXMAG00000028547	ENSXMAG00000028740	CYP4F8 (ENSXMAG00000008100)
NAME_4	ANCESTRAL SPECIES	356													ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00940000171594	ENSGT00940000164706.a
Sheepshead minnow	MODERN SPECIES	919														gart (ENSCVAG00000015441)	n6amt1 (ENSCVAG00000015389)	ENSCVAG00000015364 ##22	ENSCVAG00000015352	cbsa (ENSCVAG00000000393)	u2af1 (ENSCVAG00000015263)	zgc:172122 (ENSCVAG00000015241)	ENSCVAG00000015235
Mummichog	MODERN SPECIES	476													gart (ENSFHEG00000018839)	n6amt1 (ENSFHEG00000018883)	ENSFHEG00000018906	ENSFHEG00000018916 ##22	ENSFHEG00000019007	ENSFHEG00000019041	u2af1 (ENSFHEG00000019072)	ENSFHEG00000019084	zgc:172122 (ENSFHEG00000019093)	ENSFHEG00000019094	ENSFHEG00000019104
Oryzias	ANCESTRAL SPECIES	26				ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000155021	ENSGT00940000160883.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b
Oryzias_b	ANCESTRAL SPECIES	86				ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000155021	ENSGT00940000160883.a	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000154348.c.b.a.b.b	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b
Indian medaka	MODERN SPECIES	24	ENSOMEG00000010069	ENSOMEG00000010055	ENSOMEG00000010031	aamp (ENSOMEG00000010020)	HDAC4 (ENSOMEG00000009954)	PRPS2 (ENSOMEG00000009817)	ENSOMEG00000009728	ENSOMEG00000009715	rab9a (ENSOMEG00000009701)	ENSOMEG00000009671 ##27	gemin8 (ENSOMEG00000009646)	ENSOMEG00000009638	NCAM2 (ENSOMEG00000009610)	gart (ENSOMEG00000009525)	ENSOMEG00000009469	ENSOMEG00000009444 ##22	ENSOMEG00000009397	cbsa (ENSOMEG00000009353)	u2af1 (ENSOMEG00000009326)	ENSOMEG00000009304	zgc:172122 (ENSOMEG00000009289)	ENSOMEG00000009274	ENSOMEG00000009256	ENSOMEG00000009225	ENSOMEG00000009210	ENSOMEG00000000228	ENSOMEG00000000226	ENSOMEG00000000829	WHRN (ENSOMEG00000009151)	stxbp1b (ENSOMEG00000009138)	ABCA2 (ENSOMEG00000009062)
Javanese ricefish	MODERN SPECIES	11	ENSOJAG00000007408	ENSOJAG00000007400	SLC19A1 (ENSOJAG00000007390)	ENSOJAG00000007356	CYP4F8 (ENSOJAG00000007175)	ENSOJAG00000007141	ENSOJAG00000007131	chn1 (ENSOJAG00000006429)	FARP1 (ENSOJAG00000006308)	ggact.3 (ENSOJAG00000006282)	ENSOJAG00000006272	arl13b (ENSOJAG00000006254)	NCAM2 (ENSOJAG00000005974)	gart (ENSOJAG00000005857)	ENSOJAG00000005811	ENSOJAG00000005714 ##22	ENSOJAG00000005689	cbsa (ENSOJAG00000005110)	u2af1 (ENSOJAG00000005070)	ENSOJAG00000005053	zgc:172122 (ENSOJAG00000005034)	ENSOJAG00000005024	kpnb3 (ENSOJAG00000004960)	atg13 (ENSOJAG00000004745)	creb3l1 (ENSOJAG00000004635)	ENSOJAG00000004592	unc50 (ENSOJAG00000004033)	ENSOJAG00000004002	ENSOJAG00000003544	SOX1 (ENSOJAG00000003234)	nsfa (ENSOJAG00000003048)
Oryzias_a	ANCESTRAL SPECIES	28			ENSGT01050000244848.A.b.b	ENSGT00950000183022.b	ENSGT00610000086518.b.b	ENSGT00940000165189	ENSGT00940000179057	ENSGT00940000163254	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT00940000155502	ENSGT00390000007055	ENSGT00940000159848	ENSGT00940000166946	ENSGT00940000153514.b.m.b	ENSGT00390000018553	ENSGT00940000164275.f.d	ENSGT00940000157269.a.b	ENSGT00940000155360.B.k
Japanese Medaka HdrR	MODERN SPECIES	11	ENSORLG00000006480	SLC19A1 (ENSORLG00000006475)	ENSORLG00000025970	cyp4f3 (ENSORLG00000006454)	ENSORLG00000006418	ENSORLG00000029425	ENSORLG00000006397	FARP1 (ENSORLG00000006374)	ggact.3 (ENSORLG00000026452)	arl13b (ENSORLG00000006350)	ENSORLG00000025415	NCAM2 (ENSORLG00000006321)	gart (ENSORLG00000006275)	ENSORLG00000028237	ENSORLG00000006216	ENSORLG00000006210 ##22	ENSORLG00000024129	cbsa (ENSORLG00000006194)	ENSORLG00000006182	ENSORLG00000025289	zgc:172122 (ENSORLG00000006159)	ENSORLG00000006146	ENSORLG00000027164	kpnb3 (ENSORLG00000006133)	atg13 (ENSORLG00000006065)	creb3l1 (ENSORLG00000006015)	zgc:110699 (ENSORLG00000006012)	NDUFS1 (ENSORLG00000006003)	unc50 (ENSORLG00000005956)	ENSORLG00000023138	ENSORLG00000005884
Chinese medaka	MODERN SPECIES	1104															ENSOSIG00000013094	ENSOSIG00000013095 ##22	ENSOSIG00000013097	ENSOSIG00000013098	cbsa (ENSOSIG00000013099)	u2af1 (ENSOSIG00000013203)
Ovalentaria_B	ANCESTRAL SPECIES	22	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000175375	ENSGT00940000159144.A.e.a	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT01060000248909	ENSGT00530000063970.f.eb	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a ##27	ENSGT00940000158619.p	ENSGT00940000181836	ENSGT00940000162067	ENSGT00980000198599
Cichlidae	ANCESTRAL SPECIES	27	ENSGT01000000214434.B.a.b	ENSGT00390000013956	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.eb.a.a.b	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b	ENSGT00390000016794.d	ENSGT00940000153309	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00940000157440.m.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543.w	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b.a.b.b	ENSGT01050000244823.d.b.a.b.b	ENSGT01050000244823.d.b.a.b.a.b.a	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.eb.a.a.b	ENSGT00610000086518.b.b	ENSGT00950000183022.b	ENSGT01050000244848.A.b.b.a	ENSGT00390000016794.d	ENSGT00940000153309	ENSGT00940000166665	ENSGT01030000234555.b	ENSGT00940000153648.a	ENSGT00940000157440.m.b
Nile tilapia	MODERN SPECIES	14	GGACT (ENSONIG00000033293)	GGACT (ENSONIG00000035702)	GGACT (ENSONIG00000020836)	GGACT (ENSONIG00000033044)	ENSONIG00000042078	arl13b (ENSONIG00000001864)	ENSONIG00000034246	NCAM2 (ENSONIG00000001866)	gart (ENSONIG00000001876)	n6amt1 (ENSONIG00000001882)	ENSONIG00000032743	ENSONIG00000033380	ENSONIG00000039398	ENSONIG00000033453	ENSONIG00000043056	ENSONIG00000001890 ##22	ENSONIG00000001891	cbsa (ENSONIG00000001895)	u2af1 (ENSONIG00000001903)	ENSONIG00000028941	ENSONIG00000038376	zgc:172122 (ENSONIG00000001907)	ENSONIG00000030689	ENSONIG00000006631	ENSONIG00000001009	ENSONIG00000001911	ENSONIG00000001929	ENSONIG00000035135	ENSONIG00000020841	ENSONIG00000037246	ENSONIG00000001939
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	16	ENSGT00940000156877	ENSGT00940000178584	ENSGT00940000175375	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00940000178886	ENSGT00940000155318.b.b	ENSGT00390000010543.w	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b.a.b.b	ENSGT01050000244823.d.b.a.b.b	ENSGT01050000244823.d.b.a.b.a.b.a	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.eb.a.a.a.b.a.a.a.b	ENSGT00530000063970.f.eb.a.a.a.b.a.a.a.a
Haplochromini	ANCESTRAL SPECIES	38	ENSGT00940000175375	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000010543.w.a.a.a	ENSGT00940000155318.b.b	ENSGT00390000010543.w.a.a.b	ENSGT00940000177017	ENSGT00390000010543.w.b	ENSGT00940000156365	ENSGT00940000157860	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b.a.b.b	ENSGT01050000244823.d.b.a.b.b	ENSGT01050000244823.d.b.a.b.a.b.a	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.eb.a.a.a.b.a.a.a.b	ENSGT00530000063970.f.eb.a.a.a.b.a.a.a.a
Burton s mouthbrooder	MODERN SPECIES	880													gart (ENSHBUG00000002692)	n6amt1 (ENSHBUG00000002644)	ENSHBUG00000002630	ENSHBUG00000002619 ##22	ENSHBUG00000002583	cbsa (ENSHBUG00000002556)	u2af1 (ENSHBUG00000002538)	ENSHBUG00000002529
Haplochromini_A	ANCESTRAL SPECIES	42	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000010543.w.a.a.a	ENSGT00940000155318.b.b	ENSGT00390000010543.w.a.a.b	ENSGT00940000177017	ENSGT00390000010543.w.b	ENSGT00940000156365	ENSGT00940000157860	ENSGT00940000178792	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b.a.b.b	ENSGT01050000244823.d.b.a.b.b	ENSGT01050000244823.d.b.a.b.a.b.a	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.eb.a.a.a.b.a.a.a.b	ENSGT00530000063970.f.eb.a.a.a.b.a.a.a.a
Haplochromini_B	ANCESTRAL SPECIES	48	ENSGT00940000175375	ENSGT00940000163647	ENSGT01030000234635.a.b.a.b.a	ENSGT00390000010543.w.a.a.a	ENSGT00940000155318.b.b	ENSGT00390000010543.w.a.a.b	ENSGT00390000010543.w.b	ENSGT00940000156365	ENSGT00940000157860	ENSGT00940000178792	ENSGT00390000000292.B	ENSGT00390000013073	ENSGT01050000244823.d.b.a.b.a.b.b	ENSGT01050000244823.d.b.a.b.b	ENSGT01050000244823.d.b.a.b.a.b.a	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00940000164706.a	ENSGT01060000248713.f	ENSGT00530000063970.f.eb.a.a.a.b.a.a.a.a
Eastern happy	MODERN SPECIES	14	GGACT (ENSACLG00000024220)	GGACT (ENSACLG00000024222)	GGACT (ENSACLG00000024225)	arl13b (ENSACLG00000024227)	ENSACLG00000024338	ENSACLG00000024340	ENSACLG00000024343	NCAM2 (ENSACLG00000024511)	ENSACLG00000024546	ENSACLG00000024557	ENSACLG00000024568	gart (ENSACLG00000024571)	n6amt1 (ENSACLG00000024678)	ENSACLG00000024714	ENSACLG00000024728	ENSACLG00000024737 ##22	ENSACLG00000024758	cbsa (ENSACLG00000024806)	u2af1 (ENSACLG00000024829)	zgc:172122 (ENSACLG00000024843)	ENSACLG00000024876	ENSACLG00000024884	ENSACLG00000024889	ENSACLG00000024976	nop58 (ENSACLG00000024979)	wdr12 (ENSACLG00000025020)	ical1 (ENSACLG00000025046)	FAM117B (ENSACLG00000025083)	bmpr2a (ENSACLG00000025110)	ENSACLG00000025169	ENSACLG00000025179
Zebra mbuna	MODERN SPECIES	1105	ENSMZEG00005017911	chn1 (ENSMZEG00005017904)	GGACT (ENSMZEG00005017899)	FARP1 (ENSMZEG00005017864)	GGACT (ENSMZEG00005017844)	GGACT (ENSMZEG00005017840)	GGACT (ENSMZEG00005017836)	arl13b (ENSMZEG00005017827)	NCAM2 (ENSMZEG00005017818)	ENSMZEG00005017816	gart (ENSMZEG00005017801)	n6amt1 (ENSMZEG00005017792)	ENSMZEG00005017786	ENSMZEG00005017783	ENSMZEG00005017780	ENSMZEG00005017774 ##22	ENSMZEG00005017767	cbsa (ENSMZEG00005017757)	u2af1 (ENSMZEG00005017751)	zgc:172122 (ENSMZEG00005017744)	ENSMZEG00005017736	FILIP1L (ENSMZEG00005017728)	ENSMZEG00005017719	ccdc28a (ENSMZEG00005017709)	ENSMZEG00005017697	ENSMZEG00005017685	ATP1A1 (ENSMZEG00005017655)	ENSMZEG00005017652	ENSMZEG00005017648	ENSMZEG00005017639	ENSMZEG00005017626
P. nyererei	MODERN SPECIES	489									arl13b (ENSPNYG00000022879)	NCAM2 (ENSPNYG00000022890)	ENSPNYG00000022903	gart (ENSPNYG00000022915)	n6amt1 (ENSPNYG00000022936)	ENSPNYG00000022946	ENSPNYG00000022952	ENSPNYG00000022957 ##22	ENSPNYG00000022963	ENSPNYG00000022974	cbsa (ENSPNYG00000022991)	u2af1 (ENSPNYG00000023001)	ENSPNYG00000000411	zgc:172122 (ENSPNYG00000000421)	ENSPNYG00000000423	ENSPNYG00000000429
Lyretail cichlid	MODERN SPECIES	315	jagn1b (ENSNBRG00000004740)	ENSNBRG00000004673	ENSNBRG00000004655	MTRF1 (ENSNBRG00000004634)	ENSNBRG00000004614	ENSNBRG00000004607	chn1 (ENSNBRG00000004568)	ENSNBRG00000004547	FARP1 (ENSNBRG00000004166)	arl13b (ENSNBRG00000004078)	NCAM2 (ENSNBRG00000004009)	gart (ENSNBRG00000003935)	n6amt1 (ENSNBRG00000003897)	ENSNBRG00000003885	ENSNBRG00000003862	ENSNBRG00000003838 ##22	ENSNBRG00000003826	cbsa (ENSNBRG00000003769)	u2af1 (ENSNBRG00000003731)	zgc:172122 (ENSNBRG00000003719)	ENSNBRG00000003706	ENSNBRG00000003695
Midas cichlid	MODERN SPECIES	1059						ENSACIG00000017699	chn1 (ENSACIG00000017667)	ENSACIG00000017657	FARP1 (ENSACIG00000017615)	ggact.3 (ENSACIG00000017606)	arl13b (ENSACIG00000017582)	NCAM2 (ENSACIG00000017103)	gart (ENSACIG00000017036)	n6amt1 (ENSACIG00000017021)	stoml2 (ENSACIG00000016978)	ENSACIG00000016950 ##22	ENSACIG00000016914	cbsa (ENSACIG00000016875)	u2af1 (ENSACIG00000016862)	ENSACIG00000016847	zgc:172122 (ENSACIG00000016822)	ENSACIG00000016810
Pomacentridae	ANCESTRAL SPECIES	133															ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a.j ##27	ENSGT00940000158619.p	ENSGT00940000181836	ENSGT00940000162067	ENSGT00980000198599	ENSGT00950000182803.B.d.b	ENSGT00940000157440.m.b
Pomacentridae_A	ANCESTRAL SPECIES	133															ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a.i	ENSGT01060000248909	ENSGT00530000063970.f.db.a.j	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a.j ##27	ENSGT00940000158619.p	ENSGT00940000181836	ENSGT00940000162067	ENSGT00980000198599
Amphiprion	ANCESTRAL SPECIES	164															ENSGT01030000234614.A.l.b	ENSGT00940000156167.a ##22	ENSGT00950000183034.A.g	ENSGT00510000047027.c.a	ENSGT00950000183152.B.c.a	ENSGT00940000171594	ENSGT00940000164706.a	ENSGT00530000063970.f.db.a.i	ENSGT01060000248909	ENSGT00530000063970.f.db.a.j	ENSGT00530000063970.e	ENSGT00390000013608	ENSGT00390000006915.c.c.a.j ##27	ENSGT00940000158619.p	ENSGT00940000181836	ENSGT00940000162067	ENSGT00980000198599
Clown anemonefish	MODERN SPECIES	1828															stoml2 (ENSAOCG00000012145)	ENSAOCG00000012095 ##22	ENSAOCG00000012084	cbsa (ENSAOCG00000012065)	u2af1 (ENSAOCG00000011990)	ENSAOCG00000011946	zgc:172122 (ENSAOCG00000011929)	ENSAOCG00000011910	ENSAOCG00000011868	ENSAOCG00000011849	gemin8 (ENSAOCG00000011833)	gpm6ba (ENSAOCG00000011795) ##27	rab9a (ENSAOCG00000011596)
Orange clownfish	MODERN SPECIES	16	ENSAPEG00000016452	ENSAPEG00000016440	ENSAPEG00000016426	TMEM163 (ENSAPEG00000016364)	ccnt2b (ENSAPEG00000016213)	ZRANB3 (ENSAPEG00000016183)	ENSAPEG00000016108	ENSAPEG00000016092	rnd3a (ENSAPEG00000016066)	mmadhca (ENSAPEG00000016004)	lypd6 (ENSAPEG00000015964)	pspc1 (ENSAPEG00000015927)	ENSAPEG00000015914	FDX1 (ENSAPEG00000015905)	ENSAPEG00000015872	ENSAPEG00000015856 ##22	ENSAPEG00000015843	cbsa (ENSAPEG00000015786)	u2af1 (ENSAPEG00000015747)	ENSAPEG00000015737	zgc:172122 (ENSAPEG00000015731)	ENSAPEG00000015717	ENSAPEG00000015704	ENSAPEG00000015688	gemin8 (ENSAPEG00000015680)	gpm6ba (ENSAPEG00000015673) ##27	rab9a (ENSAPEG00000015652)	ENSAPEG00000015640	ENSAPEG00000015617	tmsb4x (ENSAPEG00000015607)	ENSAPEG00000015588
Spiny chromis	MODERN SPECIES	2079											SLC19A1 (ENSAPOG00000002250)	ENSAPOG00000002227	CYP4F8 (ENSAPOG00000002201)	ENSAPOG00000000046	stoml2 (ENSAPOG00000002130)	ENSAPOG00000001080 ##22
Bicolor damselfish	MODERN SPECIES	731															stoml2 (ENSSPAG00000011475)	ENSSPAG00000011445 ##22	ENSSPAG00000011425	cbsa (ENSSPAG00000011350)	u2af1 (ENSSPAG00000011333)	ENSSPAG00000011318	zgc:172122 (ENSSPAG00000011296)	ENSSPAG00000011280	ENSSPAG00000011271	gemin8 (ENSSPAG00000011260)	ENSSPAG00000011244 ##27	rab9a (ENSSPAG00000011224)	TCEANC (ENSSPAG00000011216)	tmsb4x (ENSSPAG00000011207)	ENSSPAG00000011190	HDAC4 (ENSSPAG00000011141)	aamp (ENSSPAG00000011116)
Pinecone sodierfish	MODERN SPECIES	11	ENSMMDG00005007497	ENSMMDG00005006907	ENSMMDG00005006897	ENSMMDG00005006895	ENSMMDG00005006894	ENSMMDG00005006891	chn1 (ENSMMDG00005006516)	FARP1 (ENSMMDG00005006372)	ggact.3 (ENSMMDG00005006356)	arl13b (ENSMMDG00005006351)	NCAM2 (ENSMMDG00005006348)	gart (ENSMMDG00005006281)	n6amt1 (ENSMMDG00005006265)	ENSMMDG00005006262	stoml2 (ENSMMDG00005005130)	ENSMMDG00005005088 ##22	ENSMMDG00005005078	cbsa (ENSMMDG00005001061)	u2af1 (ENSMMDG00005001018)	zgc:172122 (ENSMMDG00005001014)	ENSMMDG00005001010	ENSMMDG00005001003	ENSMMDG00005000999	MOSPD2 (ENSMMDG00005000985)	gemin8 (ENSMMDG00005000982)	ENSMMDG00005000970 ##27	rab9a (ENSMMDG00005000966)	TCEANC (ENSMMDG00005000965)	ENSMMDG00005000964	ENSMMDG00005000962	HDAC4 (ENSMMDG00005000956)
Cod	MODERN SPECIES	17	f7l (ENSGMOG00000031577)	ENSGMOG00000024014	f10 (ENSGMOG00000005915)	ENSGMOG00000022259	ENSGMOG00000033090	ENSGMOG00000027687	ENSGMOG00000027536	ENSGMOG00000028263	ENSGMOG00000031280	ENSGMOG00000028906	ENSGMOG00000023064	stat1a (ENSGMOG00000012431)	ENSGMOG00000016353	nab1a (ENSGMOG00000000861)	ENSGMOG00000000752	ENSGMOG00000031767 ##22	ENSGMOG00000026608	ENSGMOG00000009627	ENSGMOG00000010229	ENSGMOG00000034784	ENSGMOG00000014770	ENSGMOG00000014799	ENSGMOG00000033773	ENSGMOG00000034786	ENSGMOG00000024879	ENSGMOG00000025711	ENSGMOG00000024440	ENSGMOG00000023411	ENSGMOG00000029265	ENSGMOG00000036147	ENSGMOG00000012913
Otomorpha	ANCESTRAL SPECIES	16	ENSGT00940000161111	ENSGT00390000006633.a ##35	ENSGT00940000156690	ENSGT00390000011576.b	ENSGT00940000157482.f	ENSGT00940000165810	ENSGT00940000174470	ENSGT00940000153727.b	ENSGT00390000006178	ENSGT01060000249180	ENSGT00940000166125	ENSGT00940000155150.b.b	ENSGT00940000164078.a.b.a.a	ENSGT00940000157138.b	ENSGT00940000155506.f	ENSGT00940000156167.a ##22	ENSGT00390000001803	ENSGT00390000000002.a.a.b	ENSGT00390000007844.b	ENSGT00390000008961.b	ENSGT00390000000703	ENSGT00940000157857	ENSGT00390000002792	ENSGT00950000183027.a.a.a	ENSGT00940000164577.a	ENSGT00940000166254.b	ENSGT00940000178677	ENSGT00950000183177.a.a.a.a.h	ENSGT00940000164356.a	ENSGT00940000158978.a.b	ENSGT00940000156647.b
Clupeiformes	ANCESTRAL SPECIES	289										ENSGT01030000234940.a	ENSGT00940000159769.a.b	ENSGT00940000164078.a.b.b	ENSGT00940000164078.a.b.a.a	ENSGT00940000157138.b	ENSGT00940000155506.f	ENSGT00940000156167.a ##22	ENSGT00390000001803	ENSGT00390000000002.a.a.b	ENSGT00940000169140	ENSGT00390000000703	ENSGT00940000157857	ENSGT00390000002792	ENSGT00950000183027.a.a.a	ENSGT00940000164577.a	ENSGT00940000166254.b	ENSGT00940000164356.a	ENSGT00940000158978.a.b	ENSGT00940000156647.b	ENSGT00390000000537.y
Denticle herring	MODERN SPECIES	16	sesn3 (ENSDCDG00000035456)	cwc15 (ENSDCDG00000035457)	ENSDCDG00000035458	ENSDCDG00000035460	ENSDCDG00000035468	ENSDCDG00000035496	ik (ENSDCDG00000035516)	ndufa2 (ENSDCDG00000035543)	ENSDCDG00000035546	ENSDCDG00000035550	ENSDCDG00000035581	ENSDCDG00000035598	cdx1b (ENSDCDG00000035601)	ENSDCDG00000035619	ENSDCDG00000035663	ENSDCDG00000035677 ##22	sra1 (ENSDCDG00000035683)	APBB3 (ENSDCDG00000035690)	ENSDCDG00000035694	cd74b (ENSDCDG00000013923)	rps14 (ENSDCDG00000013938)	ndst1b (ENSDCDG00000014310)	ENSDCDG00000018310	rbm22 (ENSDCDG00000018322)	ENSDCDG00000018339	arl3l1 (ENSDCDG00000018341)	ENSDCDG00000018344	ENSDCDG00000018350	SLC34A1 (ENSDCDG00000018358)	ENSDCDG00000018362	adra2db (ENSDCDG00000018364)
Atlantic herring	MODERN SPECIES	24	ENSCHAG00000002758	ENSCHAG00000002711	ENSCHAG00000002682	sesn3 (ENSCHAG00000002198)	ENSCHAG00000001631	ENSCHAG00000001210	ENSCHAG00000000873	ik (ENSCHAG00000011303)	haus4 (ENSCHAG00000011280)	ndufa2 (ENSCHAG00000011263)	ENSCHAG00000011254	camk2a (ENSCHAG00000009354)	cdx1b (ENSCHAG00000009295)	ENSCHAG00000008454	CSF1R (ENSCHAG00000008400)	ENSCHAG00000008379 ##22	SRA1 (ENSCHAG00000008355)	APBB3 (ENSCHAG00000008325)	ENSCHAG00000008317	ENSCHAG00000008297	rps14 (ENSCHAG00000008283)	ndst1b (ENSCHAG00000007522)	rbm22 (ENSCHAG00000007414)	ENSCHAG00000007366	arl3l1 (ENSCHAG00000007349)	ENSCHAG00000007330	ENSCHAG00000007321	SLC34A1 (ENSCHAG00000007122)	adra2db (ENSCHAG00000007110)	ENSCHAG00000007099	cnot6a (ENSCHAG00000007040)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	116	ENSGT00940000164430.a.a	ENSGT01080000257601	ENSGT00940000154901.C.b	ENSGT00950000183148.b.a.g.b	ENSGT00940000157258	ENSGT00940000164485.a	ENSGT00950000182950.A	ENSGT00940000165282.b	ENSGT00940000161460	ENSGT00940000153727.a	ENSGT00940000153727.b	ENSGT00390000006178	ENSGT00940000155150.b.b	ENSGT00940000164078.a.b.a.a	ENSGT00940000155506.f	ENSGT00940000156167.a.c ##22	ENSGT00390000001803	ENSGT00940000157857.h	ENSGT00390000002792.n	ENSGT00950000183027.a.a.a	ENSGT00940000164577.d	ENSGT00940000166254.b	ENSGT00940000158978.a.b	ENSGT00940000156647.b	ENSGT00390000000537.y	ENSGT00940000158327.k	ENSGT00950000183015.E.a	ENSGT00940000154735.c.h	ENSGT00940000157342.c.b	ENSGT00500000044831.a.a.b.b	ENSGT00940000159087
Asian bonytongue	MODERN SPECIES	19	ENSSFOG00015021850	otub1a (ENSSFOG00015031352)	ENSSFOG00015026442	slc22a6l (ENSSFOG00015021874)	pygma (ENSSFOG00015021894)	sf1 (ENSSFOG00015021978)	rbm4.2 (ENSSFOG00015030194)	cdc23 (ENSSFOG00015022009)	ENSSFOG00015022030	CDC25C (ENSSFOG00015022040)	ik (ENSSFOG00015022060)	ndufa2 (ENSSFOG00015022082)	CAMK2A (ENSSFOG00015022093)	cdx1b (ENSSFOG00015033312)	ENSSFOG00015022136	ENSSFOG00015022152 ##22	sra1 (ENSSFOG00015026447)	ENSSFOG00015031238	ENSSFOG00015022182	ENSSFOG00015022187	ENSSFOG00015027382	NDST1 (ENSSFOG00015022198)	rbm22 (ENSSFOG00015022259)	ENSSFOG00015032735	ENSSFOG00015022345	ENSSFOG00015022364	cnot6a (ENSSFOG00015030996)	ADAMTS2 (ENSSFOG00015022416)	zgc:123105 (ENSSFOG00015022453)	MAPK9 (ENSSFOG00015022465)	ENSSFOG00015022476
P. kingsleyae	MODERN SPECIES	102	ENSPKIG00000020907	slc22a6l (ENSPKIG00000020892)	pygma (ENSPKIG00000020850)	ENSPKIG00000020823	rbm4.2 (ENSPKIG00000020805)	cdc23 (ENSPKIG00000020734)	ENSPKIG00000020708	ENSPKIG00000020695	CDC25C (ENSPKIG00000020657)	wdr55 (ENSPKIG00000020607)	ik (ENSPKIG00000020532)	ndufa2 (ENSPKIG00000020504)	CAMK2A (ENSPKIG00000020422)	cdx1b (ENSPKIG00000020387)	ENSPKIG00000019823	ENSPKIG00000019503 ##22	sra1 (ENSPKIG00000019491)	APBB3 (ENSPKIG00000019465)	ENSPKIG00000019455	ENSPKIG00000019430	rps14 (ENSPKIG00000019412)	NDST1 (ENSPKIG00000019367)	rbm22 (ENSPKIG00000019326)	ENSPKIG00000019303	arl3l2 (ENSPKIG00000019284)	ENSPKIG00000019254	ADAMTS2 (ENSPKIG00000019150)	zgc:123105 (ENSPKIG00000019097)	MAPK9 (ENSPKIG00000019058)	ENSPKIG00000019023	ENSPKIG00000018992
Osteoglossiformes	ANCESTRAL SPECIES	33	ENSGT00390000008582	ENSGT00530000063652.a.b	ENSGT00940000166356.f	ENSGT00530000064262.pc.b	ENSGT00940000156931.c	ENSGT00940000165282.a	ENSGT00940000159225	ENSGT00390000005922.b	ENSGT00390000008104	ENSGT01060000249180	ENSGT00940000157656.a	ENSGT00940000159769.a.b	ENSGT00940000164078.a.b.b	ENSGT00940000157138.a	ENSGT00940000155506.e	ENSGT00940000156167.a.d ##22	ENSGT00390000006983.b	ENSGT00390000000002.a.a.b	ENSGT00390000007844.b	ENSGT00950000182827.F	ENSGT00940000174022	ENSGT00390000008961	ENSGT00390000000703	ENSGT00940000157857.g	ENSGT00390000002792.m	ENSGT00950000183027.a.a.b	ENSGT00940000177027	ENSGT00940000164577.c	ENSGT00940000166254.a	ENSGT00990000204195	ENSGT00950000183177.a.a.a.a.g
Asian bonytongue	MODERN SPECIES	4	ENSSFOG00015011534	brd8b (ENSSFOG00015011553)	kif20a (ENSSFOG00015011576)	gfra3 (ENSSFOG00015032912)	dnd1 (ENSSFOG00015011717)	hars (ENSSFOG00015011741)	ENSSFOG00015011824	tmco6 (ENSSFOG00015011913)	ENSSFOG00015029909	ARSI (ENSSFOG00015011993)	ENSSFOG00015012034	ENSSFOG00015027305	ENSSFOG00015024394	pdgfrb (ENSSFOG00015014672)	csf1ra (ENSSFOG00015014696)	ENSSFOG00015014760 ##22	HMGXB3 (ENSSFOG00015014769)	APBB3 (ENSSFOG00015014791)	ENSSFOG00015027334	SLC35A4 (ENSSFOG00015014809)	cd74a (ENSSFOG00015014822)	rps14 (ENSSFOG00015027181)	NDST1 (ENSSFOG00015014884)	rbm22 (ENSSFOG00015014955)	ENSSFOG00015031051	ENSSFOG00015014993	rgs14a (ENSSFOG00015015016)	SLC34A1 (ENSSFOG00015015061)	adra2da (ENSSFOG00015015084)	ENSSFOG00015015095	CNOT6 (ENSSFOG00015015133)
P. kingsleyae	MODERN SPECIES	289													ENSPKIG00000010014	pdgfrb (ENSPKIG00000009936)	csf1ra (ENSPKIG00000009778)	ENSPKIG00000009721 ##22	HMGXB3 (ENSPKIG00000009686)	APBB3 (ENSPKIG00000009659)	ENSPKIG00000009643	SLC35A4 (ENSPKIG00000009634)	ENSPKIG00000009624	cd74a (ENSPKIG00000009604)	rps14 (ENSPKIG00000009582)	hnrnph1 (ENSPKIG00000009532)	RUFY1 (ENSPKIG00000009483)	hbegfa (ENSPKIG00000009462)	ENSPKIG00000009446	C1QTNF2 (ENSPKIG00000009423)	slu7 (ENSPKIG00000009367)	ccnjl (ENSPKIG00000009322)	fabp6 (ENSPKIG00000009298)
Reedfish	MODERN SPECIES	2	ENSECRG00000011395	ENSECRG00000011487	zmat2 (ENSECRG00000011584)	DND1 (ENSECRG00000011600)	hars (ENSECRG00000011628)	ENSECRG00000013595	wdr55 (ENSECRG00000013620)	ik (ENSECRG00000013652)	ndufa2 (ENSECRG00000013696)	tmco6 (ENSECRG00000013730)	ARSI (ENSECRG00000013768)	camk2a (ENSECRG00000013873)	cdx1b (ENSECRG00000014111)	pdgfrb (ENSECRG00000014164)	csf1ra (ENSECRG00000014257)	ENSECRG00000014313 ##22	sumo3a (ENSECRG00000014340)	HMGXB3 (ENSECRG00000014406)	SRA1 (ENSECRG00000014471)	APBB3 (ENSECRG00000014499)	ENSECRG00000014538	SLC35A4 (ENSECRG00000014565)	TLR2 (ENSECRG00000014613)	rps14 (ENSECRG00000014674)	ndst1a (ENSECRG00000014727)	rbm22 (ENSECRG00000014868)	ENSECRG00000014951	ENSECRG00000015065	adra2da (ENSECRG00000015090)	ENSECRG00000015117	ENSECRG00000015199
Sarcopterygii	ANCESTRAL SPECIES	41	ENSGT00390000006954	ENSGT00390000002792	ENSGT00950000183027.a.a	ENSGT00950000183054.a.a.b	ENSGT00940000157857	ENSGT00390000000703	ENSGT00390000008961	ENSGT00730000111382	ENSGT00940000157656.a	ENSGT00940000159769.a.b	ENSGT00940000155150.b.b	ENSGT00940000160823	ENSGT00940000164078.a	ENSGT00940000157138	ENSGT00940000155506	ENSGT00940000156167.a ##22	ENSGT00390000006983	ENSGT00940000155973.a	ENSGT00940000158537	ENSGT00940000159358	ENSGT00940000157465	ENSGT00940000178460	ENSGT00940000158554	ENSGT00390000006124	ENSGT00390000002781	ENSGT00940000156526.a
Coelacanth	MODERN SPECIES	246	TNIP1 (ENSLACG00000017071)	gpx3 (ENSLACG00000017032)	ENSLACG00000016993	DCTN4 (ENSLACG00000016808)	MYOZ3 (ENSLACG00000016775)	SYNPO (ENSLACG00000016722)	ENSLACG00000016448	NDST1 (ENSLACG00000016258)	rps14 (ENSLACG00000016164)	CD74 (ENSLACG00000016022)	ARSI (ENSLACG00000015662)	CAMK2A (ENSLACG00000015235)	cdx1b (ENSLACG00000014957)	PDGFRB (ENSLACG00000014583)	CSF1R (ENSLACG00000014332)	ENSLACG00000014172 ##22	HMGXB3 (ENSLACG00000013957)	npy7r (ENSLACG00000013918)	ENSLACG00000013594	FLT4 (ENSLACG00000012631)	RNF130 (ENSLACG00000011973)	TBC1D9B (ENSLACG00000011446)
Elephant shark	MODERN SPECIES	1577													ENSCMIG00000001935	WWC1 (ENSCMIG00000001688) ##15	TENM2 (ENSCMIG00000001579) ##18	ENSCMIG00000001503 ##22	ENSCMIG00000001476	ENSCMIG00000001471	ENSCMIG00000001460	LARS1 (ENSCMIG00000000911)	ENSCMIG00000000760	ENSCMIG00000000757	GRXCR2 (ENSCMIG00000000746)	glra1 (ENSCMIG00000000617)	g3bp1 (ENSCMIG00000000548)	sparc (ENSCMIG00000000506)	ENSCMIG00000000490	FAT2 (ENSCMIG00000000471)	ENSCMIG00000000460	SLC36A1 (ENSCMIG00000000413)	GM2A (ENSCMIG00000000397)
Cyclostomata	ANCESTRAL SPECIES	1055																ENSGT00940000156167 #22	ENSGT00390000006983
Hagfish	MODERN SPECIES	231																ENSEBUG00000000340 #22	ENSEBUG00000015285	ENSEBUG00000009453	piga (ENSEBUG00000012335)	spcs3 (ENSEBUG00000011008) #23	ENSEBUG00000007786	ENSEBUG00000015636	ENSEBUG00000015620 ##27	ENSEBUG00000007436 ##27	ENSEBUG00000007316	ENSEBUG00000004029	med15 (ENSEBUG00000009354)	ENSEBUG00000008892	ENSEBUG00000004256	ENSEBUG00000004285	ENSEBUG00000000883