Rodentia_A ANCESTRAL SPECIES 21 ENSGT00940000153232.a.b ENSGT01050000246068 ENSGT00940000159063 #8 ENSGT00940000158457 #9 ENSGT00520000055589.d #10 ENSGT00390000006550 #11 ENSGT00390000015545 #12 ENSGT00940000158194 #13 ENSGT00940000158376 #14 ENSGT00940000162234 #15 ENSGT00410000025556.a.a.a.b #17 ENSGT00940000153676.a #18 ENSGT01030000234566.e.b.a.a #19 ENSGT00950000183045.C #20 ENSGT00940000153230.A #21 ENSGT00940000156167.b #22 ENSGT00390000009223 #24 ENSGT00940000159851 #25 ENSGT00910000144159.B #26 ENSGT00940000158602 #27 ENSGT00390000006915.d #29 ENSGT00940000163394 #31 ENSGT00940000158368 #32 ENSGT00940000154593.a.b #33 ENSGT00390000009873 #34 ENSGT00940000158356 #35 ENSGT00940000160772 #36 ENSGT00390000009191 #37 ENSGT00390000006633.b ENSGT00940000154466 ENSGT00940000158105 Sciuridae ANCESTRAL SPECIES 29 ENSGT00940000159063 #8 ENSGT00940000158457 #9 ENSGT00520000055589.d #10 ENSGT00390000006550 #11 ENSGT00390000015545 #12 ENSGT00940000158194 #13 ENSGT00940000158376 #14 ENSGT00940000162234.cb #15 ENSGT00940000162234.bb #16 ENSGT00940000161922.i.b ENSGT00410000025556.a.a.a.b #17 ENSGT00940000153676.a #18 ENSGT01030000234566.e.b.a.a #19 ENSGT00950000183045.C #20 ENSGT00940000153230.A #21 ENSGT00940000156167.b #22 ENSGT00390000009223 #24 ENSGT00940000159851 #25 ENSGT00910000144159.B #26 ENSGT00940000158602 #27 ENSGT00390000006915.d #29 ENSGT00940000163394 #31 ENSGT00940000158368 #32 ENSGT00940000154593.a.b #33 ENSGT00390000009873 #34 ENSGT00940000158356 #35 ENSGT00940000160772 #36 ENSGT00390000009191 #37 ENSGT00390000006633.b ENSGT00940000154466 ENSGT00940000158105 Eurasian red squirrel MODERN SPECIES 14 ENSSVLG00005003654 #7 IRF2 (ENSSVLG00005003630) #8 ENPP6 (ENSSVLG00005003610) #9 ENSSVLG00005003590 #10 TRAPPC11 (ENSSVLG00005003499) #11 RWDD4 (ENSSVLG00005003423) #12 ING2 (ENSSVLG00005003400) #13 CDKN2AIP (ENSSVLG00005003382) #14 ENSSVLG00005003376 #15 ENSSVLG00005003361 #16 WWC2 (ENSSVLG00005003319) #17 DCTD (ENSSVLG00005003300) #18 TENM3 (ENSSVLG00005003236) #19 AGA (ENSSVLG00005003168) #20 NEIL3 (ENSSVLG00005003141) #21 VEGFC (ENSSVLG00005003095) #22 ENSSVLG00005003081 #23 ENSSVLG00005003064 #24 ASB5 (ENSSVLG00005002993) #25 SPATA4 (ENSSVLG00005002939) #26 WDR17 (ENSSVLG00005002773) #27 ENSSVLG00005002719 #28 GPM6A (ENSSVLG00005002667) #29 ENSSVLG00005002637 #30 ENSSVLG00005002611 #31 GLRA3 (ENSSVLG00005002568) #32 ENSSVLG00005002462 #33 CEP44 (ENSSVLG00005002394) #34 ENSSVLG00005002353 #35 HAND2 (ENSSVLG00005002329) #36 SCRG1 (ENSSVLG00005002314) #37 Marmotini ANCESTRAL SPECIES 30 ENSGT00940000153232.a.b.y.a ENSGT00940000159063 #8 ENSGT00940000158457 #9 ENSGT00520000055589.d #10 ENSGT00390000006550 #11 ENSGT00390000015545.u #12 ENSGT00940000158194 #13 ENSGT00940000158376 #14 ENSGT00940000161922.i.b.f ENSGT00940000161922.i.b.e ENSGT00410000025556.a.a.a.b #17 ENSGT00940000153676.a #18 ENSGT01030000234566.e.b.a.a #19 ENSGT00950000183045.C #20 ENSGT00940000153230.A #21 ENSGT00940000156167.b #22 ENSGT00390000009223 #24 ENSGT00940000159851 #25 ENSGT00910000144159.B #26 ENSGT00940000158602 #27 ENSGT00390000006915.d #29 ENSGT00940000163394 #31 ENSGT00940000158368 #32 ENSGT00940000154593.a.b #33 ENSGT00390000009873 #34 ENSGT00940000158356 #35 ENSGT00940000160772 #36 ENSGT00390000009191 #37 ENSGT00390000006633.b ENSGT00940000154466 ENSGT00940000158105 Marmotini_b ANCESTRAL SPECIES 161 ENSGT00950000183045.C #20 ENSGT00940000153230.A #21 ENSGT00940000156167.b #22 ENSGT00390000009223 #24 ENSGT00940000159851 #25 ENSGT00910000144159.B #26 ENSGT00940000158602 #27 ENSGT00390000006915.d #29 ENSGT00940000163394 #31 ENSGT00940000158368 #32 ENSGT00940000154593.a.b #33 ENSGT00390000009873 #34 ENSGT00940000158356 #35 ENSGT00940000160772 #36 ENSGT00390000009191 #37 ENSGT00390000006633.b ENSGT00940000154466 ENSGT00940000158105 Squirrel MODERN SPECIES 116 ENSSTOG00000025042 AGA (ENSSTOG00000011875) #20 NEIL3 (ENSSTOG00000016245) #21 VEGFC (ENSSTOG00000002297) #22 SPCS3 (ENSSTOG00000013678) #24 ASB5 (ENSSTOG00000026375) #25 SPATA4 (ENSSTOG00000013667) #26 WDR17 (ENSSTOG00000013640) #27 GPM6A (ENSSTOG00000023117) #29 ADAM29 (ENSSTOG00000025632) #31 GLRA3 (ENSSTOG00000005897) #32 HPGD (ENSSTOG00000025253) #33 ENSSTOG00000030307 CEP44 (ENSSTOG00000012395) #34 FBXO8 (ENSSTOG00000012389) #35 HAND2 (ENSSTOG00000023020) #36 ENSSTOG00000021612 SCRG1 (ENSSTOG00000011513) #37 SAP30 (ENSSTOG00000027418) Arctic ground squirrel MODERN SPECIES 653 NEIL3 (ENSUPAG00010013811) #21 VEGFC (ENSUPAG00010013826) #22 Alpin marmot MODERN SPECIES 17 ENSMMMG00000012424 IRF2 (ENSMMMG00000012444) #8 ENPP6 (ENSMMMG00000012465) #9 STOX2 (ENSMMMG00000012483) #10 TRAPPC11 (ENSMMMG00000012528) #11 ENSMMMG00000012560 #12 ING2 (ENSMMMG00000012572) #13 CDKN2AIP (ENSMMMG00000012577) #14 ENSMMMG00000012586 ENSMMMG00000012589 WWC2 (ENSMMMG00000012593) #17 DCTD (ENSMMMG00000012615) #18 TENM3 (ENSMMMG00000012655) #19 AGA (ENSMMMG00000012785) #20 NEIL3 (ENSMMMG00000012802) #21 VEGFC (ENSMMMG00000012828) #22 ENSMMMG00000012853 #24 ASB5 (ENSMMMG00000012874) #25 SPATA4 (ENSMMMG00000012880) #26 WDR17 (ENSMMMG00000012914) #27 GPM6A (ENSMMMG00000013073) #29 ADAM29 (ENSMMMG00000013127) #31 ENSMMMG00000013158 GLRA3 (ENSMMMG00000013188) #32 HPGD (ENSMMMG00000014081) #33 CEP44 (ENSMMMG00000014097) #34 FBXO8 (ENSMMMG00000014117) #35 HAND2 (ENSMMMG00000014142) #36 SCRG1 (ENSMMMG00000014153) #37 SAP30 (ENSMMMG00000014160) ENSMMMG00000014173 Hystricomorpha ANCESTRAL SPECIES 21 ENSGT01050000246068 ENSGT00940000159063 #8 ENSGT00940000158457 #9 ENSGT00520000055589.d #10 ENSGT00390000006550 #11 ENSGT00390000015545 #12 ENSGT00940000158194 #13 ENSGT00940000158376.m #14 ENSGT00940000158376.n #14 ENSGT00940000162234 #15 ENSGT00410000025556.a.a.a.b #17 ENSGT00940000153676.a #18 ENSGT01030000234566.e.b.a.a #19 ENSGT00950000183045.C #20 ENSGT00940000153230.A #21 ENSGT00940000156167.b #22 ENSGT00390000009223 #24 ENSGT00940000159851 #25 ENSGT00910000144159.B #26 ENSGT00940000158602 #27 ENSGT00390000006915.d #29 ENSGT00940000163394 #31 ENSGT00940000158368 #32 ENSGT00940000154593.a.b #33 ENSGT00390000009873 #34 ENSGT00940000158356 #35 ENSGT00940000160772 #36 ENSGT00390000009191 #37 ENSGT00390000006633.b ENSGT00940000154466 ENSGT00940000158105 Hystricomorpha_a ANCESTRAL SPECIES 20 ENSGT00390000003901 ENSGT00940000153232.a.b ENSGT01050000246068 ENSGT00940000159063 #8 ENSGT00940000158457 #9 ENSGT00520000055589.d #10 ENSGT00390000006550 #11 ENSGT00390000015545 #12 ENSGT00940000158194 #13 ENSGT00940000158376.m #14 ENSGT00410000025556.a.a.a.b #17 ENSGT00940000153676.a #18 ENSGT01030000234566.e.b.a.a #19 ENSGT00950000183045.C #20 ENSGT00940000153230.A #21 ENSGT00940000156167.b #22 ENSGT00390000009223 #24 ENSGT00940000159851 #25 ENSGT00910000144159.B #26 ENSGT00940000158602 #27 ENSGT00390000006915.d #29 ENSGT00940000163394 #31 ENSGT00940000158368 #32 ENSGT00940000154593.a.b #33 ENSGT00390000009873 #34 ENSGT00940000158356 #35 ENSGT00940000160772 #36 ENSGT00390000009191 #37 ENSGT00390000006633.b ENSGT00940000154466 ENSGT00940000158105 Guinea pig MODERN SPECIES 36 Acsl1 (ENSCPOG00000002734) CENPU (ENSCPOG00000034557) PRIMPOL (ENSCPOG00000002732) ENSCPOG00000012511 IRF2 (ENSCPOG00000013097) #8 ENPP6 (ENSCPOG00000002554) #9 STOX2 (ENSCPOG00000036387) #10 TRAPPC11 (ENSCPOG00000011620) #11 ING2 (ENSCPOG00000012109) #13 CDKN2AIP (ENSCPOG00000035168) #14 WWC2 (ENSCPOG00000002473) #17 DCTD (ENSCPOG00000040207) #18 TENM3 (ENSCPOG00000009475) #19 AGA (ENSCPOG00000002674) #20 NEIL3 (ENSCPOG00000003297) #21 VEGFC (ENSCPOG00000035891) #22 SPCS3 (ENSCPOG00000008544) #24 ASB5 (ENSCPOG00000013084) #25 SPATA4 (ENSCPOG00000024215) #26 WDR17 (ENSCPOG00000019958) #27 GPM6A (ENSCPOG00000030014) #29 GLRA3 (ENSCPOG00000012157) #32 Hpgd (ENSCPOG00000001979) #33 CEP44 (ENSCPOG00000013247) #34 FBXO8 (ENSCPOG00000010347) #35 HAND2 (ENSCPOG00000036252) #36 SCRG1 (ENSCPOG00000001738) #37 SAP30 (ENSCPOG00000001736) HMGB2 (ENSCPOG00000003552) GALNT7 (ENSCPOG00000031800) GALNTL6 (ENSCPOG00000015730) Hystricomorpha_b ANCESTRAL SPECIES 30 ENSGT00390000003901 ENSGT00940000153232.a.b ENSGT01050000246068 ENSGT00940000159063 #8 ENSGT00940000158457 #9 ENSGT00520000055589.d #10 ENSGT00390000006550 #11 ENSGT00390000015545 #12 ENSGT00940000158194 #13 ENSGT00940000158376.m #14 ENSGT00410000025556.a.a.a.b #17 ENSGT00940000153676.a #18 ENSGT01030000234566.e.b.a.a #19 ENSGT00950000183045.C #20 ENSGT00940000153230.A #21 ENSGT00940000156167.b #22 ENSGT00390000009223 #24 ENSGT00940000159851 #25 ENSGT00910000144159.B #26 ENSGT00940000158602 #27 ENSGT00390000006915.d #29 ENSGT00940000163394 #31 ENSGT00940000158368 #32 ENSGT00940000154593.a.b #33 ENSGT00390000009873 #34 ENSGT00940000158356 #35 ENSGT00940000160772 #36 ENSGT00390000009191 #37 ENSGT00390000006633.b ENSGT00940000154466 ENSGT00940000158105 Long-tailed chinchilla MODERN SPECIES 110 CENPU (ENSCLAG00000011512) PRIMPOL (ENSCLAG00000012642) ENSCLAG00000014245 IRF2 (ENSCLAG00000015934) #8 ENPP6 (ENSCLAG00000012884) #9 STOX2 (ENSCLAG00000015001) #10 TRAPPC11 (ENSCLAG00000016148) #11 RWDD4 (ENSCLAG00000014148) #12 ING2 (ENSCLAG00000014843) #13 CDKN2AIP (ENSCLAG00000012072) #14 WWC2 (ENSCLAG00000012066) #17 DCTD (ENSCLAG00000012757) #18 TENM3 (ENSCLAG00000013736) #19 AGA (ENSCLAG00000014580) #20 NEIL3 (ENSCLAG00000015661) #21 VEGFC (ENSCLAG00000013066) #22 SPCS3 (ENSCLAG00000015410) #24 ASB5 (ENSCLAG00000011261) #25 SPATA4 (ENSCLAG00000011629) #26 WDR17 (ENSCLAG00000016000) #27 GPM6A (ENSCLAG00000017285) #29 ADAM29 (ENSCLAG00000017816) #31 GLRA3 (ENSCLAG00000014561) #32 HPGD (ENSCLAG00000015466) #33 CEP44 (ENSCLAG00000016227) #34 FBXO8 (ENSCLAG00000012922) #35 HAND2 (ENSCLAG00000014433) #36 SCRG1 (ENSCLAG00000014455) #37 SAP30 (ENSCLAG00000013849) HMGB2 (ENSCLAG00000011532) GALNT7 (ENSCLAG00000012394) Degu MODERN SPECIES 162 VEGFC (ENSODEG00000012246) #22 SPCS3 (ENSODEG00000011576) #24 ASB5 (ENSODEG00000012431) #25 SPATA4 (ENSODEG00000011174) #26 WDR17 (ENSODEG00000012341) #27 GPM6A (ENSODEG00000011825) #29 ADAM29 (ENSODEG00000011881) #31 GLRA3 (ENSODEG00000012317) #32 HPGD (ENSODEG00000011658) #33 ENSODEG00000011812 #34 FBXO8 (ENSODEG00000012698) #35 ENSODEG00000011991 HAND2 (ENSODEG00000013288) #36 SCRG1 (ENSODEG00000019896) #37 SAP30 (ENSODEG00000011600) GALNT7 (ENSODEG00000011574) Naked mole-rat female MODERN SPECIES 25 WWC2 (ENSHGLG00000018666) #17 DCTD (ENSHGLG00000018838) #18 ENSHGLG00000003748 ENSHGLG00000006389 #19 ADH5 (ENSHGLG00000036012) ENSHGLG00000000109 ENSHGLG00000005432 ENSHGLG00000020591 ENSHGLG00000034460 ENSHGLG00000036943 ENSHGLG00000008181 #20 ENSHGLG00000006643 #21 ENSHGLG00000020432 ENSHGLG00000021433 ENSHGLG00000040987 VEGFC (ENSHGLG00000010268) #22 ENSHGLG00000035994 SPCS3 (ENSHGLG00000007439) #24 ASB5 (ENSHGLG00000032188) #25 SPATA4 (ENSHGLG00000005881) #26 ENSHGLG00000042719 ENSHGLG00000038990 WDR17 (ENSHGLG00000013909) #27 ENSHGLG00000047046 GPM6A (ENSHGLG00000044374) #29 ENSHGLG00000038324 #31 GLRA3 (ENSHGLG00000010062) #32 HPGD (ENSHGLG00000006196) #33 CEP44 (ENSHGLG00000007002) #34 FBXO8 (ENSHGLG00000015555) #35 HAND2 (ENSHGLG00000044998) #36