Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00950000185140	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Glires	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00950000185140	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Rodentia	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Muroidea	ANCESTRAL SPECIES	34	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Northern American deer mouse	MODERN SPECIES	17	Neb (ENSPEMG00000011241) #7	ENSPEMG00000010335 #8	Cacnb4 (ENSPEMG00000000044) #9	Stam2 (ENSPEMG00000012476) #10	Fmnl2 (ENSPEMG00000021308) #11	Prpf40a (ENSPEMG00000020838) #12	Arl6ip6 (ENSPEMG00000001460) #13	Rprm (ENSPEMG00000014265) #14	ENSPEMG00000013797 #15	Galnt13 (ENSPEMG00000015185) #16	ENSPEMG00000012843 #17	Kcnj3 (ENSPEMG00000015278) #18	ENSPEMG00000027901 #19	Nr4a2 (ENSPEMG00000000011) #20	ENSPEMG00000027857 #21	Gpd2 (ENSPEMG00000020267) #22	Galnt5 (ENSPEMG00000020201) #23	Ermn (ENSPEMG00000026555) #24	Cytip (ENSPEMG00000010824) #25	Acvr1c (ENSPEMG00000008762) #26	Acvr1 (ENSPEMG00000008567) #27	ENSPEMG00000029209 #28	Upp2 (ENSPEMG00000004188) #29	Ccdc148 (ENSPEMG00000016298) #30	Pkp4 (ENSPEMG00000015348) #31	Dapl1 (ENSPEMG00000016737) #32	ENSPEMG00000008774 #33	ENSPEMG00000024402 #34	Tanc1 (ENSPEMG00000006898) #35	Wdsub1 (ENSPEMG00000013163) #36	Baz2b (ENSPEMG00000011049) #37
Prairie vole	MODERN SPECIES	12	Rbm43 (ENSMOCG00000007686)	ENSMOCG00000011562	Tnfaip6 (ENSMOCG00000003915)	Rif1 (ENSMOCG00000009381)	Neb (ENSMOCG00000022729) #7	Arl5a (ENSMOCG00000019795) #8	Cacnb4 (ENSMOCG00000022468) #9	Stam2 (ENSMOCG00000003177) #10	Fmnl2 (ENSMOCG00000022812) #11	Prpf40a (ENSMOCG00000009517) #12	Arl6ip6 (ENSMOCG00000016947) #13	Rprm (ENSMOCG00000002172) #14	Galnt13 (ENSMOCG00000014596) #16	Kcnj3 (ENSMOCG00000020988) #18	Nr4a2 (ENSMOCG00000004312) #20	Gpd2 (ENSMOCG00000022538) #22	Galnt5 (ENSMOCG00000018686) #23	Ermn (ENSMOCG00000022625) #24	Cytip (ENSMOCG00000016003) #25	Acvr1c (ENSMOCG00000021159) #26	Acvr1 (ENSMOCG00000014737) #27	Upp2 (ENSMOCG00000013921) #29	Ccdc148 (ENSMOCG00000003566) #30	ENSMOCG00000005550	Pkp4 (ENSMOCG00000015021) #31	Dapl1 (ENSMOCG00000022472) #32	Tanc1 (ENSMOCG00000008681) #35	Wdsub1 (ENSMOCG00000021664) #36	Baz2b (ENSMOCG00000004160) #37	Marchf7 (ENSMOCG00000005095)	Cd302 (ENSMOCG00000020178)
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Chinese hamster chok1gshd	MODERN SPECIES	188	Rbm43 (ENSCGRG00001011129)	Nmi (ENSCGRG00001000480)	Tnfaip6 (ENSCGRG00001024845)	Rif1 (ENSCGRG00001024589)	Neb (ENSCGRG00001022624) #7	Arl5a (ENSCGRG00001024645) #8	Cacnb4 (ENSCGRG00001023366) #9	Stam2 (ENSCGRG00001023878) #10	Fmnl2 (ENSCGRG00001024179) #11	Prpf40a (ENSCGRG00001022526) #12	Arl6ip6 (ENSCGRG00001021408) #13	Rprm (ENSCGRG00001009462) #14	Galnt13 (ENSCGRG00001004190) #16	Kcnj3 (ENSCGRG00001000982) #18	Nr4a2 (ENSCGRG00001001426) #20	Gpd2 (ENSCGRG00001024452) #22	Galnt5 (ENSCGRG00001004718) #23	Ermn (ENSCGRG00001016956) #24	Cytip (ENSCGRG00001024713) #25	Acvr1c (ENSCGRG00001023713) #26	Acvr1 (ENSCGRG00001023684) #27	Upp2 (ENSCGRG00001011463) #29	Ccdc148 (ENSCGRG00001023650) #30	Pkp4 (ENSCGRG00001024825) #31	ENSCGRG00001008878 #32	Tanc1 (ENSCGRG00001015684) #35	Baz2b (ENSCGRG00001011640) #37	Marchf7 (ENSCGRG00001024547)	Cd302 (ENSCGRG00001000797)	Ly75 (ENSCGRG00001024055)	Pla2r1 (ENSCGRG00001024467)
Golden Hamster	MODERN SPECIES	633	Rnd3 (ENSMAUG00000011617)	Rbm43 (ENSMAUG00000012908)	Nmi (ENSMAUG00000011421)	Rif1 (ENSMAUG00000013158)	Neb (ENSMAUG00000004953) #7	Arl5a (ENSMAUG00000011769) #8	Cacnb4 (ENSMAUG00000014567) #9	Stam2 (ENSMAUG00000000322) #10	Fmnl2 (ENSMAUG00000013048) #11	Prpf40a (ENSMAUG00000020074) #12	Arl6ip6 (ENSMAUG00000001987) #13	Rprm (ENSMAUG00000018060) #14	Galnt13 (ENSMAUG00000007643) #16	ENSMAUG00000018084 #18	Nr4a2 (ENSMAUG00000009371) #20	Gpd2 (ENSMAUG00000015110) #22	Galnt5 (ENSMAUG00000015690) #23	Ermn (ENSMAUG00000017936) #24	Cytip (ENSMAUG00000018649) #25	Acvr1c (ENSMAUG00000018969) #26	Upp2 (ENSMAUG00000000231) #29	Ccdc148 (ENSMAUG00000000409) #30	Pkp4 (ENSMAUG00000019677) #31	Dapl1 (ENSMAUG00000007222) #32	Tanc1 (ENSMAUG00000016219) #35	Wdsub1 (ENSMAUG00000002168) #36	ENSMAUG00000007486 #37	ENSMAUG00000008617 #37	Ly75 (ENSMAUG00000015663)	Pla2r1 (ENSMAUG00000002027)	Itgb6 (ENSMAUG00000013668)
Murinae	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Mus	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a
Mus_A	ANCESTRAL SPECIES		ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a
Mus_C	ANCESTRAL SPECIES		ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a
spretus	MODERN SPECIES	11	Rbm43 (MGP_SPRETEiJ_G0024473)	Nmi (MGP_SPRETEiJ_G0024474)	Tnfaip6 (MGP_SPRETEiJ_G0024475)	Rif1 (MGP_SPRETEiJ_G0024476)	Neb (MGP_SPRETEiJ_G0024477) #7	Arl5a (MGP_SPRETEiJ_G0024478) #8	Cacnb4 (MGP_SPRETEiJ_G0024479) #9	Stam2 (MGP_SPRETEiJ_G0024480) #10	Fmnl2 (MGP_SPRETEiJ_G0024481) #11	Prpf40a (MGP_SPRETEiJ_G0024482) #12	Arl6ip6 (MGP_SPRETEiJ_G0024483) #13	Rprm (MGP_SPRETEiJ_G0024484) #14	Galnt13 (MGP_SPRETEiJ_G0024485) #16	Kcnj3 (MGP_SPRETEiJ_G0024486) #18	Nr4a2 (MGP_SPRETEiJ_G0024487) #20	Gpd2 (MGP_SPRETEiJ_G0024488) #22	Galnt5 (MGP_SPRETEiJ_G0024489) #23	Ermn (MGP_SPRETEiJ_G0024490) #24	Cytip (MGP_SPRETEiJ_G0024491) #25	Acvr1c (MGP_SPRETEiJ_G0024492) #26	Acvr1 (MGP_SPRETEiJ_G0024493) #27	MGP_SPRETEiJ_G0024494	Upp2 (MGP_SPRETEiJ_G0024495) #29	Ccdc148 (MGP_SPRETEiJ_G0024496) #30	MGP_SPRETEiJ_G0024497	Pkp4 (MGP_SPRETEiJ_G0024498) #31	Dapl1 (MGP_SPRETEiJ_G0024499) #32	Tanc1 (MGP_SPRETEiJ_G0024500) #35	Wdsub1 (MGP_SPRETEiJ_G0024501) #36	Baz2b (MGP_SPRETEiJ_G0024502) #37	Marchf7 (MGP_SPRETEiJ_G0024503)
Steppe mouse	MODERN SPECIES	2744															Nr4a2 (ENSMSIG00000032191) #20	Gpd2 (ENSMSIG00000032187) #22
Mouse	MODERN SPECIES	11	Rbm43 (ENSMUSG00000036249)	Nmi (ENSMUSG00000026946)	Tnfaip6 (ENSMUSG00000053475)	Rif1 (ENSMUSG00000036202)	Neb (ENSMUSG00000026950) #7	Arl5a (ENSMUSG00000036093) #8	Cacnb4 (ENSMUSG00000017412) #9	Stam2 (ENSMUSG00000055371) #10	Fmnl2 (ENSMUSG00000036053) #11	Prpf40a (ENSMUSG00000061136) #12	Arl6ip6 (ENSMUSG00000026960) #13	Rprm (ENSMUSG00000075334) #14	Galnt13 (ENSMUSG00000060988) #16	Kcnj3 (ENSMUSG00000026824) #18	Nr4a2 (ENSMUSG00000026826) #20	Gpd2 (ENSMUSG00000026827) #22	Galnt5 (ENSMUSG00000026828) #23	Ermn (ENSMUSG00000026830) #24	Cytip (ENSMUSG00000026832) #25	Acvr1c (ENSMUSG00000026834) #26	Acvr1 (ENSMUSG00000026836) #27	Upp2 (ENSMUSG00000026839) #29	Ccdc148 (ENSMUSG00000036641) #30	Pkp4 (ENSMUSG00000026991) #31	Dapl1 (ENSMUSG00000026989) #32	Tanc1 (ENSMUSG00000035168) #35	Wdsub1 (ENSMUSG00000026988) #36	Baz2b (ENSMUSG00000026987) #37	Marchf7 (ENSMUSG00000026977)	Cd302 (ENSMUSG00000060703)	Ly75 (ENSMUSG00000026980)
Ryukyu mouse	MODERN SPECIES	11	Rbm43 (MGP_CAROLIEiJ_G0023552)	Nmi (MGP_CAROLIEiJ_G0023553)	Tnfaip6 (MGP_CAROLIEiJ_G0023554)	Rif1 (MGP_CAROLIEiJ_G0023555)	MGP_CAROLIEiJ_G0023556 #7	Arl5a (MGP_CAROLIEiJ_G0023557) #8	Cacnb4 (MGP_CAROLIEiJ_G0023558) #9	Stam2 (MGP_CAROLIEiJ_G0023559) #10	Fmnl2 (MGP_CAROLIEiJ_G0023560) #11	Prpf40a (MGP_CAROLIEiJ_G0023561) #12	Arl6ip6 (MGP_CAROLIEiJ_G0023562) #13	Rprm (MGP_CAROLIEiJ_G0023563) #14	Galnt13 (MGP_CAROLIEiJ_G0023564) #16	Kcnj3 (MGP_CAROLIEiJ_G0023565) #18	Nr4a2 (MGP_CAROLIEiJ_G0023566) #20	Gpd2 (MGP_CAROLIEiJ_G0023567) #22	Galnt5 (MGP_CAROLIEiJ_G0023568) #23	Ermn (MGP_CAROLIEiJ_G0023569) #24	Cytip (MGP_CAROLIEiJ_G0023570) #25	Acvr1c (MGP_CAROLIEiJ_G0023571) #26	Acvr1 (MGP_CAROLIEiJ_G0023572) #27	MGP_CAROLIEiJ_G0023573	Upp2 (MGP_CAROLIEiJ_G0023574) #29	Ccdc148 (MGP_CAROLIEiJ_G0023575) #30	Pkp4 (MGP_CAROLIEiJ_G0023576) #31	Dapl1 (MGP_CAROLIEiJ_G0023577) #32	Tanc1 (MGP_CAROLIEiJ_G0023578) #35	Wdsub1 (MGP_CAROLIEiJ_G0023579) #36	Baz2b (MGP_CAROLIEiJ_G0023580) #37	Marchf7 (MGP_CAROLIEiJ_G0023581)	Cd302 (MGP_CAROLIEiJ_G0023582)
Shrew mouse	MODERN SPECIES	16	Rbm43 (MGP_PahariEiJ_G0025003)	Nmi (MGP_PahariEiJ_G0025004)	Tnfaip6 (MGP_PahariEiJ_G0025005)	Rif1 (MGP_PahariEiJ_G0025006)	MGP_PahariEiJ_G0025007 #7	Arl5a (MGP_PahariEiJ_G0025008) #8	Cacnb4 (MGP_PahariEiJ_G0025009) #9	Stam2 (MGP_PahariEiJ_G0025010) #10	Fmnl2 (MGP_PahariEiJ_G0025011) #11	Prpf40a (MGP_PahariEiJ_G0025012) #12	Arl6ip6 (MGP_PahariEiJ_G0025013) #13	Rprm (MGP_PahariEiJ_G0025014) #14	Galnt13 (MGP_PahariEiJ_G0025015) #16	Kcnj3 (MGP_PahariEiJ_G0025016) #18	Nr4a2 (MGP_PahariEiJ_G0025017) #20	Gpd2 (MGP_PahariEiJ_G0025018) #22	Galnt5 (MGP_PahariEiJ_G0025019) #23	Ermn (MGP_PahariEiJ_G0025020) #24	Cytip (MGP_PahariEiJ_G0025021) #25	Acvr1c (MGP_PahariEiJ_G0025022) #26	Acvr1 (MGP_PahariEiJ_G0025023) #27	MGP_PahariEiJ_G0025024	Upp2 (MGP_PahariEiJ_G0025025) #29	Ccdc148 (MGP_PahariEiJ_G0025026) #30	Pkp4 (MGP_PahariEiJ_G0025027) #31	Dapl1 (MGP_PahariEiJ_G0025028) #32	Tanc1 (MGP_PahariEiJ_G0025029) #35	Wdsub1 (MGP_PahariEiJ_G0025030) #36	Baz2b (MGP_PahariEiJ_G0025031) #37	Marchf7 (MGP_PahariEiJ_G0025032)	Cd302 (MGP_PahariEiJ_G0025033)
Rat	MODERN SPECIES	13	AABR07052125.1 (ENSRNOG00000006829)	Arl5a (ENSRNOG00000006839) #8	Cacnb4 (ENSRNOG00000007666) #9	Stam2 (ENSRNOG00000027447) #10	Ndufa2-ps1 (ENSRNOG00000064291)	Dppa5 (ENSRNOG00000029793)	Fmnl2 (ENSRNOG00000055567) #11	Prpf40a (ENSRNOG00000004864) #12	Arl6ip6 (ENSRNOG00000005074) #13	Micos10-ps2 (ENSRNOG00000065751)	Rprm (ENSRNOG00000005109) #14	Galnt13 (ENSRNOG00000005335) #16	ENSRNOG00000065543	Kcnj3 (ENSRNOG00000005369) #18	Nr4a2 (ENSRNOG00000005600) #20	Gpd2 (ENSRNOG00000033824) #22	Galnt5 (ENSRNOG00000004645) #23	Ermn (ENSRNOG00000021472) #24	Cytip (ENSRNOG00000004772) #25	Acvr1c (ENSRNOG00000004828) #26	Acvr1 (ENSRNOG00000005033) #27	Gapdh-ps1 (ENSRNOG00000071205)	Upp2 (ENSRNOG00000005341) #29	Ccdc148 (ENSRNOG00000057740) #30	Pkp4 (ENSRNOG00000005504) #31	Dapl1 (ENSRNOG00000005743) #32	ENSRNOG00000064239	Tanc1 (ENSRNOG00000025394) #35	Wdsub1 (ENSRNOG00000005990) #36	Baz2b (ENSRNOG00000056984) #37	LOC100361645 (ENSRNOG00000031951)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1170															Nr4a2 (ENSNGAG00000001664) #20	Gpd2 (ENSNGAG00000006795) #22	Galnt5 (ENSNGAG00000011264) #23	Ermn (ENSNGAG00000016602) #24	Cytip (ENSNGAG00000017542) #25	Acvr1c (ENSNGAG00000020794) #26	Acvr1 (ENSNGAG00000003562) #27
Lesser Egyptian jerboa	MODERN SPECIES	46	Neb (ENSJJAG00000012568) #7	ENSJJAG00000015512 #8	Cacnb4 (ENSJJAG00000016900) #9	Stam2 (ENSJJAG00000009817) #10	Fmnl2 (ENSJJAG00000021375) #11	Prpf40a (ENSJJAG00000004636) #12	Arl6ip6 (ENSJJAG00000019266) #13	ENSJJAG00000023428	Rprm (ENSJJAG00000012518) #14	ENSJJAG00000002819	Galnt13 (ENSJJAG00000010483) #16	Kcnj3 (ENSJJAG00000007165) #18	ENSJJAG00000022824	Nr4a2 (ENSJJAG00000018362) #20	ENSJJAG00000022660	ENSJJAG00000018801 #22	Galnt5 (ENSJJAG00000004437) #23	Ermn (ENSJJAG00000017224) #24	Cytip (ENSJJAG00000015679) #25	Acvr1c (ENSJJAG00000000840) #26	Acvr1 (ENSJJAG00000021757) #27	Upp2 (ENSJJAG00000019359) #29	Ccdc148 (ENSJJAG00000012594) #30	Pkp4 (ENSJJAG00000010175) #31	Dapl1 (ENSJJAG00000008272) #32	Tanc1 (ENSJJAG00000015166) #35	Wdsub1 (ENSJJAG00000017632) #36	Baz2b (ENSJJAG00000021770) #37	ENSJJAG00000001578	Marchf7 (ENSJJAG00000019998)	Cd302 (ENSJJAG00000020650)
Kangaroo rat	MODERN SPECIES	324	Nmi (ENSDORG00000024973)	ENSDORG00000028394	Tnfaip6 (ENSDORG00000016446)	Neb (ENSDORG00000004258) #7	ENSDORG00000003082 #8	Cacnb4 (ENSDORG00000007926) #9	Stam2 (ENSDORG00000007927) #10	Fmnl2 (ENSDORG00000029929) #11	Prpf40a (ENSDORG00000006757) #12	Arl6ip6 (ENSDORG00000006761) #13	ENSDORG00000028417	Rprm (ENSDORG00000003407) #14	Galnt13 (ENSDORG00000011932) #16	Kcnj3 (ENSDORG00000005402) #18	Nr4a2 (ENSDORG00000007987) #20	Gpd2 (ENSDORG00000004451) #22	Galnt5 (ENSDORG00000003518) #23	Ermn (ENSDORG00000003519) #24	ENSDORG00000023938	Cytip (ENSDORG00000015983) #25	Acvr1c (ENSDORG00000010112) #26	Acvr1 (ENSDORG00000013457) #27	Upp2 (ENSDORG00000005683) #29	Ccdc148 (ENSDORG00000008724) #30	Pkp4 (ENSDORG00000007017) #31	Dapl1 (ENSDORG00000009147) #32	Tanc1 (ENSDORG00000010962) #35	Wdsub1 (ENSDORG00000005593) #36	Baz2b (ENSDORG00000005595) #37	Marchf7 (ENSDORG00000006639)	Cd302 (ENSDORG00000006643)
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714.fb.a #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Marmotini	ANCESTRAL SPECIES	2	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714.fb.a #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714.fb.a #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Arctic ground squirrel	MODERN SPECIES	247															NR4A2 (ENSUPAG00010002498) #20	GPD2 (ENSUPAG00010002450) #22	GALNT5 (ENSUPAG00010002439) #23	ERMN (ENSUPAG00010002433) #24	CYTIP (ENSUPAG00010002402) #25	ACVR1C (ENSUPAG00010002309) #26	ACVR1 (ENSUPAG00010002272) #27	CCDC148 (ENSUPAG00010002234) #30	PKP4 (ENSUPAG00010001863) #31	DAPL1 (ENSUPAG00010001849) #32	TANC1 (ENSUPAG00010001635) #35	WDSUB1 (ENSUPAG00010001603) #36	BAZ2B (ENSUPAG00010001347) #37
Squirrel	MODERN SPECIES	69	RBM43 (ENSSTOG00000016311)	NMI (ENSSTOG00000028659)	TNFAIP6 (ENSSTOG00000016314)	RIF1 (ENSSTOG00000020712)	NEB (ENSSTOG00000016315) #7	ARL5A (ENSSTOG00000016326) #8	CACNB4 (ENSSTOG00000016328) #9	STAM2 (ENSSTOG00000025023) #10	FMNL2 (ENSSTOG00000001614) #11	PRPF40A (ENSSTOG00000001642) #12	ARL6IP6 (ENSSTOG00000001658) #13	RPRM (ENSSTOG00000026311) #14	GALNT13 (ENSSTOG00000011628) #16	KCNJ3 (ENSSTOG00000014395) #18	NR4A2 (ENSSTOG00000002966) #20	GPD2 (ENSSTOG00000005221) #22	ENSSTOG00000021734 #23	ERMN (ENSSTOG00000006613) #24	CYTIP (ENSSTOG00000009143) #25	ACVR1C (ENSSTOG00000009159) #26	ACVR1 (ENSSTOG00000004704) #27	UPP2 (ENSSTOG00000030477) #29	CCDC148 (ENSSTOG00000016271) #30	PKP4 (ENSSTOG00000007684) #31	DAPL1 (ENSSTOG00000007725) #32	TANC1 (ENSSTOG00000009738) #35	WDSUB1 (ENSSTOG00000009762) #36	BAZ2B (ENSSTOG00000009772) #37	MARCHF7 (ENSSTOG00000024765)	CD302 (ENSSTOG00000030907)	LY75 (ENSSTOG00000015933)
Alpin marmot	MODERN SPECIES	5	RIF1 (ENSMMMG00000021851)	NEB (ENSMMMG00000021921) #7	ENSMMMG00000022061 #8	CACNB4 (ENSMMMG00000022074) #9	STAM2 (ENSMMMG00000022104) #10	ENSMMMG00000022120	FMNL2 (ENSMMMG00000022132) #11	PRPF40A (ENSMMMG00000022291) #12	ARL6IP6 (ENSMMMG00000022320) #13	ENSMMMG00000022335 #16	ENSMMMG00000022338 #16	ENSMMMG00000022342 #16	ENSMMMG00000022354	KCNJ3 (ENSMMMG00000022368) #18	NR4A2 (ENSMMMG00000022388) #20	GPD2 (ENSMMMG00000022395) #22	ENSMMMG00000022423 #23	ENSMMMG00000022427 #23	ERMN (ENSMMMG00000022432) #24	CYTIP (ENSMMMG00000022447) #25	ACVR1C (ENSMMMG00000022458) #26	ACVR1 (ENSMMMG00000022485) #27	UPP2 (ENSMMMG00000022512) #29	CCDC148 (ENSMMMG00000022526) #30	PKP4 (ENSMMMG00000022548) #31	DAPL1 (ENSMMMG00000022578) #32	TANC1 (ENSMMMG00000022589) #35	WDSUB1 (ENSMMMG00000022608) #36	BAZ2B (ENSMMMG00000022620) #37	MARCHF7 (ENSMMMG00000022639)	CD302 (ENSMMMG00000022645)
Eurasian red squirrel	MODERN SPECIES	12	RIF1 (ENSSVLG00005003716)	NEB (ENSSVLG00005004118) #7	ENSSVLG00005004729	ENSSVLG00005004741 #8	CACNB4 (ENSSVLG00005005336) #9	ENSSVLG00005007179	STAM2 (ENSSVLG00005007197) #10	FMNL2 (ENSSVLG00005007277) #11	ENSSVLG00005007428	PRPF40A (ENSSVLG00005007429) #12	ENSSVLG00005007524 #13	RPRM (ENSSVLG00005007559) #14	ENSSVLG00005007594 #16	KCNJ3 (ENSSVLG00005007729) #18	NR4A2 (ENSSVLG00005007787) #20	GPD2 (ENSSVLG00005007886) #22	ENSSVLG00005008042 #23	ERMN (ENSSVLG00005008084) #24	CYTIP (ENSSVLG00005008173) #25	ACVR1C (ENSSVLG00005008270) #26	ACVR1 (ENSSVLG00005008490) #27	ENSSVLG00005008520	UPP2 (ENSSVLG00005008546) #29	CCDC148 (ENSSVLG00005008598) #30	PKP4 (ENSSVLG00005008751) #31	ENSSVLG00005008811	DAPL1 (ENSSVLG00005008852) #32	TANC1 (ENSSVLG00005009095) #35	WDSUB1 (ENSSVLG00005010265) #36	BAZ2B (ENSSVLG00005010334) #37	MARCHF7 (ENSSVLG00005010418)
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d.f #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d.f #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	24															ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d.f #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Long-tailed chinchilla	MODERN SPECIES	156															NR4A2 (ENSCLAG00000003290) #20	GPD2 (ENSCLAG00000002866) #22	GALNT5 (ENSCLAG00000003428) #23	ERMN (ENSCLAG00000003341) #24	CYTIP (ENSCLAG00000003247) #25	ACVR1C (ENSCLAG00000003034) #26	ACVR1 (ENSCLAG00000004342) #27	UPP2 (ENSCLAG00000003919) #29	CCDC148 (ENSCLAG00000003622) #30	PKP4 (ENSCLAG00000005831) #31	DAPL1 (ENSCLAG00000004812) #32	TANC1 (ENSCLAG00000004542) #35	ENSCLAG00000007913 #36	BAZ2B (ENSCLAG00000006190) #37	ENSCLAG00000009790	MARCHF7 (ENSCLAG00000009318)	CD302 (ENSCLAG00000012904)
Degu	MODERN SPECIES	73											ENSODEG00000014301	ENSODEG00000014644	ENSODEG00000020160	ENSODEG00000014372	NR4A2 (ENSODEG00000014223) #20	GPD2 (ENSODEG00000013945) #22	ENSODEG00000014559	GALNT5 (ENSODEG00000014096) #23	ERMN (ENSODEG00000014133) #24	ENSODEG00000014529 #25	ACVR1C (ENSODEG00000013991) #26	ACVR1 (ENSODEG00000014264) #27	UPP2 (ENSODEG00000014593) #29	CCDC148 (ENSODEG00000014894) #30	ENSODEG00000020204	PKP4 (ENSODEG00000014779) #31	DAPL1 (ENSODEG00000014464) #32	TANC1 (ENSODEG00000014910) #35	WDSUB1 (ENSODEG00000014178) #36	BAZ2B (ENSODEG00000014127) #37	ENSODEG00000015125
Guinea pig	MODERN SPECIES	3	NMI (ENSCPOG00000013053)	TNFAIP6 (ENSCPOG00000007974)	ENSCPOG00000038795	RIF1 (ENSCPOG00000037898)	NEB (ENSCPOG00000005161) #7	ARL5A (ENSCPOG00000005209) #8	CACNB4 (ENSCPOG00000026052) #9	STAM2 (ENSCPOG00000002847) #10	FMNL2 (ENSCPOG00000013482) #11	PRPF40A (ENSCPOG00000013494) #12	RPRM (ENSCPOG00000005597) #14	GALNT13 (ENSCPOG00000013115) #16	ENSCPOG00000005051 #18	ENSCPOG00000034740 #18	NR4A2 (ENSCPOG00000008225) #20	GPD2 (ENSCPOG00000000193) #22	GALNT5 (ENSCPOG00000000913) #23	CYTIP (ENSCPOG00000034296) #25	ACVR1C (ENSCPOG00000007111) #26	ACVR1 (ENSCPOG00000008791) #27	UPP2 (ENSCPOG00000003006) #29	CCDC148 (ENSCPOG00000004172) #30	PKP4 (ENSCPOG00000012130) #31	DAPL1 (ENSCPOG00000033811) #32	TANC1 (ENSCPOG00000008679) #35	WDSUB1 (ENSCPOG00000008696) #36	BAZ2B (ENSCPOG00000015233) #37	MARCHF7 (ENSCPOG00000003969)	CD302 (ENSCPOG00000003976)	LY75 (ENSCPOG00000008372)	PLA2R1 (ENSCPOG00000008394)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000037717	ENSHGLG00000047580	ENSHGLG00000036357	ARL6IP6 (ENSHGLG00000047268) #13	ENSHGLG00000041758	ENSHGLG00000041977	ENSHGLG00000034456	RPRM (ENSHGLG00000020667) #14	GALNT13 (ENSHGLG00000008663) #16	ENSHGLG00000041709	ENSHGLG00000048169 #18	ENSHGLG00000043622 ##24	ENSHGLG00000032785	ENSHGLG00000005496	ENSHGLG00000004699 #20	ENSHGLG00000004553 #22	ENSHGLG00000035939	ENSHGLG00000025302	GALNT5 (ENSHGLG00000040944) #23	ERMN (ENSHGLG00000044020) #24	CYTIP (ENSHGLG00000049755) #25	ACVR1C (ENSHGLG00000007777) #26	ACVR1 (ENSHGLG00000006379) #27	UPP2 (ENSHGLG00000004451) #29	CCDC148 (ENSHGLG00000004309) #30	ENSHGLG00000007575 #31	ENSHGLG00000004955	ENSHGLG00000009016 #32	ENSHGLG00000048160	TANC1 (ENSHGLG00000014465) #35	WDSUB1 (ENSHGLG00000014132) #36
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000045770	ARHGEF6 (ENSHGLG00000004195)	ENSHGLG00000011055	GPR101 (ENSHGLG00000044397)	ENSHGLG00000033794	ENSHGLG00000041497	ENSHGLG00000010972	ENSHGLG00000046515	ENSHGLG00000040882	ENSHGLG00000007629	ENSHGLG00000033865	ENSHGLG00000034873	ENSHGLG00000034867	F9 (ENSHGLG00000050058)	MCF2 (ENSHGLG00000013161)	ENSHGLG00000009095 #22	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472	FMR1 (ENSHGLG00000000576)
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d #7	ENSGT00940000154714 #8	ENSGT00950000182837.b.b #9	ENSGT00940000157055 #10	ENSGT00940000155515.a.b.b #11	ENSGT00930000150980.a #12	ENSGT00950000185140	ENSGT00390000009987 #13	ENSGT00390000010523.c.b #14	ENSGT00940000158904 #16	ENSGT01080000257365.b.a.a.b.a #18	ENSGT00950000183038.a.b.b.b #20	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #29	ENSGT00940000153988.A #30	ENSGT00940000155773.b #31	ENSGT00940000154574.d #32	ENSGT00940000155655.B #35	ENSGT00940000157230 #36	ENSGT00940000155359 #37	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a
Pika	MODERN SPECIES	393																GPD2 (ENSOPRG00000010713) #22
Rabbit	MODERN SPECIES	18	ENSOCUG00000035924	NEB (ENSOCUG00000017458) #7	ARL5A (ENSOCUG00000035346) #8	ENSOCUG00000000144 #9	STAM2 (ENSOCUG00000000344) #10	ENSOCUG00000013216 #11	ENSOCUG00000037766 #12	ENSOCUG00000013239 #12	ENSOCUG00000030282	ARL6IP6 (ENSOCUG00000013257) #13	RPRM (ENSOCUG00000001688) #14	GALNT13 (ENSOCUG00000017645) #16	KCNJ3 (ENSOCUG00000024206) #18	ENSOCUG00000013788	NR4A2 (ENSOCUG00000000784) #20	GPD2 (ENSOCUG00000009764) #22	ENSOCUG00000021063	GALNT5 (ENSOCUG00000009185) #23	ERMN (ENSOCUG00000009198) #24	CYTIP (ENSOCUG00000009200) #25	ACVR1C (ENSOCUG00000009208) #26	ENSOCUG00000032469	ENSOCUG00000039151	ACVR1 (ENSOCUG00000002439) #27	UPP2 (ENSOCUG00000008498) #29	ENSOCUG00000034761	ENSOCUG00000035971	ENSOCUG00000029444 #30	PKP4 (ENSOCUG00000013466) #31	ENSOCUG00000008620 #32	TANC1 (ENSOCUG00000015107) #35
Tree shrew	MODERN SPECIES	596																GPD2 (ENSTBEG00000014623) #22