Glires	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00950000185140	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Rodentia	ANCESTRAL SPECIES	14	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d.f #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d.f #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Hystricomorpha_b	ANCESTRAL SPECIES	24															ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d.f #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Long-tailed chinchilla	MODERN SPECIES	156															NR4A2 (ENSCLAG00000003290) #21	GPD2 (ENSCLAG00000002866) #22	GALNT5 (ENSCLAG00000003428) #23	ERMN (ENSCLAG00000003341) #24	CYTIP (ENSCLAG00000003247) #25	ACVR1C (ENSCLAG00000003034) #26	ACVR1 (ENSCLAG00000004342) #27	UPP2 (ENSCLAG00000003919) #28	CCDC148 (ENSCLAG00000003622) #29	PKP4 (ENSCLAG00000005831) #30	DAPL1 (ENSCLAG00000004812) #31	TANC1 (ENSCLAG00000004542) #32	ENSCLAG00000007913 #33	BAZ2B (ENSCLAG00000006190) #34	ENSCLAG00000009790 #35	MARCHF7 (ENSCLAG00000009318) #36	CD302 (ENSCLAG00000012904) #37
Degu	MODERN SPECIES	73											ENSODEG00000014301	ENSODEG00000014644	ENSODEG00000020160	ENSODEG00000014372	NR4A2 (ENSODEG00000014223) #21	GPD2 (ENSODEG00000013945) #22	ENSODEG00000014559	GALNT5 (ENSODEG00000014096) #23	ERMN (ENSODEG00000014133) #24	ENSODEG00000014529 #25	ACVR1C (ENSODEG00000013991) #26	ACVR1 (ENSODEG00000014264) #27	UPP2 (ENSODEG00000014593) #28	CCDC148 (ENSODEG00000014894) #29	ENSODEG00000020204	PKP4 (ENSODEG00000014779) #30	DAPL1 (ENSODEG00000014464) #31	TANC1 (ENSODEG00000014910) #32	WDSUB1 (ENSODEG00000014178) #33	BAZ2B (ENSODEG00000014127) #34	ENSODEG00000015125
Guinea pig	MODERN SPECIES	3	NMI (ENSCPOG00000013053)	TNFAIP6 (ENSCPOG00000007974)	ENSCPOG00000038795	RIF1 (ENSCPOG00000037898)	NEB (ENSCPOG00000005161)	ARL5A (ENSCPOG00000005209)	CACNB4 (ENSCPOG00000026052)	STAM2 (ENSCPOG00000002847)	FMNL2 (ENSCPOG00000013482)	PRPF40A (ENSCPOG00000013494)	RPRM (ENSCPOG00000005597)	GALNT13 (ENSCPOG00000013115)	ENSCPOG00000005051	ENSCPOG00000034740	NR4A2 (ENSCPOG00000008225) #21	GPD2 (ENSCPOG00000000193) #22	GALNT5 (ENSCPOG00000000913) #23	CYTIP (ENSCPOG00000034296) #25	ACVR1C (ENSCPOG00000007111) #26	ACVR1 (ENSCPOG00000008791) #27	UPP2 (ENSCPOG00000003006) #28	CCDC148 (ENSCPOG00000004172) #29	PKP4 (ENSCPOG00000012130) #30	DAPL1 (ENSCPOG00000033811) #31	TANC1 (ENSCPOG00000008679) #32	WDSUB1 (ENSCPOG00000008696) #33	BAZ2B (ENSCPOG00000015233) #34	MARCHF7 (ENSCPOG00000003969) #36	CD302 (ENSCPOG00000003976) #37	LY75 (ENSCPOG00000008372) ##37	PLA2R1 (ENSCPOG00000008394) ##37
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000037717	ENSHGLG00000047580	ENSHGLG00000036357	ARL6IP6 (ENSHGLG00000047268)	ENSHGLG00000041758	ENSHGLG00000041977	ENSHGLG00000034456	RPRM (ENSHGLG00000020667)	GALNT13 (ENSHGLG00000008663)	ENSHGLG00000041709	ENSHGLG00000048169	ENSHGLG00000043622 ##24	ENSHGLG00000032785	ENSHGLG00000005496	ENSHGLG00000004699 #21	ENSHGLG00000004553 #22	ENSHGLG00000035939	ENSHGLG00000025302	GALNT5 (ENSHGLG00000040944) #23	ERMN (ENSHGLG00000044020) #24	CYTIP (ENSHGLG00000049755) #25	ACVR1C (ENSHGLG00000007777) #26	ACVR1 (ENSHGLG00000006379) #27	UPP2 (ENSHGLG00000004451) #28	CCDC148 (ENSHGLG00000004309) #29	ENSHGLG00000007575 #30	ENSHGLG00000004955	ENSHGLG00000009016 #31	ENSHGLG00000048160	TANC1 (ENSHGLG00000014465) #32	WDSUB1 (ENSHGLG00000014132) #33
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000045770	ARHGEF6 (ENSHGLG00000004195)	ENSHGLG00000011055	GPR101 (ENSHGLG00000044397)	ENSHGLG00000033794	ENSHGLG00000041497	ENSHGLG00000010972	ENSHGLG00000046515	ENSHGLG00000040882	ENSHGLG00000007629	ENSHGLG00000033865	ENSHGLG00000034873	ENSHGLG00000034867	F9 (ENSHGLG00000050058)	MCF2 (ENSHGLG00000013161)	ENSHGLG00000009095 #22	ATP11C (ENSHGLG00000007759)	ENSHGLG00000047068	SOX3 (ENSHGLG00000039208)	ENSHGLG00000039059	ENSHGLG00000004407	ENSHGLG00000037583	ENSHGLG00000036529	ENSHGLG00000049672	ENSHGLG00000038876	ENSHGLG00000032750	ENSHGLG00000035566	SLITRK2 (ENSHGLG00000007935)	ENSHGLG00000045634	ENSHGLG00000040472	FMR1 (ENSHGLG00000000576)
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714.fb.a	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Marmotini	ANCESTRAL SPECIES	2	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714.fb.a	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714.fb.a	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Arctic ground squirrel	MODERN SPECIES	247															NR4A2 (ENSUPAG00010002498) #21	GPD2 (ENSUPAG00010002450) #22	GALNT5 (ENSUPAG00010002439) #23	ERMN (ENSUPAG00010002433) #24	CYTIP (ENSUPAG00010002402) #25	ACVR1C (ENSUPAG00010002309) #26	ACVR1 (ENSUPAG00010002272) #27	CCDC148 (ENSUPAG00010002234) #29	PKP4 (ENSUPAG00010001863) #30	DAPL1 (ENSUPAG00010001849) #31	TANC1 (ENSUPAG00010001635) #32	WDSUB1 (ENSUPAG00010001603) #33	BAZ2B (ENSUPAG00010001347) #34
Squirrel	MODERN SPECIES	69	RBM43 (ENSSTOG00000016311)	NMI (ENSSTOG00000028659)	TNFAIP6 (ENSSTOG00000016314)	RIF1 (ENSSTOG00000020712)	NEB (ENSSTOG00000016315)	ARL5A (ENSSTOG00000016326)	CACNB4 (ENSSTOG00000016328)	STAM2 (ENSSTOG00000025023)	FMNL2 (ENSSTOG00000001614)	PRPF40A (ENSSTOG00000001642)	ARL6IP6 (ENSSTOG00000001658)	RPRM (ENSSTOG00000026311)	GALNT13 (ENSSTOG00000011628)	KCNJ3 (ENSSTOG00000014395)	NR4A2 (ENSSTOG00000002966) #21	GPD2 (ENSSTOG00000005221) #22	ENSSTOG00000021734 #23	ERMN (ENSSTOG00000006613) #24	CYTIP (ENSSTOG00000009143) #25	ACVR1C (ENSSTOG00000009159) #26	ACVR1 (ENSSTOG00000004704) #27	UPP2 (ENSSTOG00000030477) #28	CCDC148 (ENSSTOG00000016271) #29	PKP4 (ENSSTOG00000007684) #30	DAPL1 (ENSSTOG00000007725) #31	TANC1 (ENSSTOG00000009738) #32	WDSUB1 (ENSSTOG00000009762) #33	BAZ2B (ENSSTOG00000009772) #34	MARCHF7 (ENSSTOG00000024765) #36	CD302 (ENSSTOG00000030907) #37	LY75 (ENSSTOG00000015933) ##37
Alpin marmot	MODERN SPECIES	5	RIF1 (ENSMMMG00000021851)	NEB (ENSMMMG00000021921)	ENSMMMG00000022061	CACNB4 (ENSMMMG00000022074)	STAM2 (ENSMMMG00000022104)	ENSMMMG00000022120	FMNL2 (ENSMMMG00000022132)	PRPF40A (ENSMMMG00000022291)	ARL6IP6 (ENSMMMG00000022320)	ENSMMMG00000022335	ENSMMMG00000022338	ENSMMMG00000022342	ENSMMMG00000022354	KCNJ3 (ENSMMMG00000022368)	NR4A2 (ENSMMMG00000022388) #21	GPD2 (ENSMMMG00000022395) #22	ENSMMMG00000022423 #23	ENSMMMG00000022427 #23	ERMN (ENSMMMG00000022432) #24	CYTIP (ENSMMMG00000022447) #25	ACVR1C (ENSMMMG00000022458) #26	ACVR1 (ENSMMMG00000022485) #27	UPP2 (ENSMMMG00000022512) #28	CCDC148 (ENSMMMG00000022526) #29	PKP4 (ENSMMMG00000022548) #30	DAPL1 (ENSMMMG00000022578) #31	TANC1 (ENSMMMG00000022589) #32	WDSUB1 (ENSMMMG00000022608) #33	BAZ2B (ENSMMMG00000022620) #34	MARCHF7 (ENSMMMG00000022639) #36	CD302 (ENSMMMG00000022645) #37
Eurasian red squirrel	MODERN SPECIES	12	RIF1 (ENSSVLG00005003716)	NEB (ENSSVLG00005004118)	ENSSVLG00005004729	ENSSVLG00005004741	CACNB4 (ENSSVLG00005005336)	ENSSVLG00005007179	STAM2 (ENSSVLG00005007197)	FMNL2 (ENSSVLG00005007277)	ENSSVLG00005007428	PRPF40A (ENSSVLG00005007429)	ENSSVLG00005007524	RPRM (ENSSVLG00005007559)	ENSSVLG00005007594	KCNJ3 (ENSSVLG00005007729)	NR4A2 (ENSSVLG00005007787) #21	GPD2 (ENSSVLG00005007886) #22	ENSSVLG00005008042 #23	ERMN (ENSSVLG00005008084) #24	CYTIP (ENSSVLG00005008173) #25	ACVR1C (ENSSVLG00005008270) #26	ACVR1 (ENSSVLG00005008490) #27	ENSSVLG00005008520	UPP2 (ENSSVLG00005008546) #28	CCDC148 (ENSSVLG00005008598) #29	PKP4 (ENSSVLG00005008751) #30	ENSSVLG00005008811	DAPL1 (ENSSVLG00005008852) #31	TANC1 (ENSSVLG00005009095) #32	WDSUB1 (ENSSVLG00005010265) #33	BAZ2B (ENSSVLG00005010334) #34	MARCHF7 (ENSSVLG00005010418) #36
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Muroidea	ANCESTRAL SPECIES	34	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Chinese hamster chok1gshd	MODERN SPECIES	188	Rbm43 (ENSCGRG00001011129)	Nmi (ENSCGRG00001000480)	Tnfaip6 (ENSCGRG00001024845)	Rif1 (ENSCGRG00001024589)	Neb (ENSCGRG00001022624)	Arl5a (ENSCGRG00001024645)	Cacnb4 (ENSCGRG00001023366)	Stam2 (ENSCGRG00001023878)	Fmnl2 (ENSCGRG00001024179)	Prpf40a (ENSCGRG00001022526)	Arl6ip6 (ENSCGRG00001021408)	Rprm (ENSCGRG00001009462)	Galnt13 (ENSCGRG00001004190)	Kcnj3 (ENSCGRG00001000982)	Nr4a2 (ENSCGRG00001001426) #21	Gpd2 (ENSCGRG00001024452) #22	Galnt5 (ENSCGRG00001004718) #23	Ermn (ENSCGRG00001016956) #24	Cytip (ENSCGRG00001024713) #25	Acvr1c (ENSCGRG00001023713) #26	Acvr1 (ENSCGRG00001023684) #27	Upp2 (ENSCGRG00001011463) #28	Ccdc148 (ENSCGRG00001023650) #29	Pkp4 (ENSCGRG00001024825) #30	ENSCGRG00001008878 #31	Tanc1 (ENSCGRG00001015684) #32	Baz2b (ENSCGRG00001011640) #34	Marchf7 (ENSCGRG00001024547) #36	Cd302 (ENSCGRG00001000797) #37	Ly75 (ENSCGRG00001024055) ##37	Pla2r1 (ENSCGRG00001024467) ##37
Golden Hamster	MODERN SPECIES	633	Rnd3 (ENSMAUG00000011617)	Rbm43 (ENSMAUG00000012908)	Nmi (ENSMAUG00000011421)	Rif1 (ENSMAUG00000013158)	Neb (ENSMAUG00000004953)	Arl5a (ENSMAUG00000011769)	Cacnb4 (ENSMAUG00000014567)	Stam2 (ENSMAUG00000000322)	Fmnl2 (ENSMAUG00000013048)	Prpf40a (ENSMAUG00000020074)	Arl6ip6 (ENSMAUG00000001987)	Rprm (ENSMAUG00000018060)	Galnt13 (ENSMAUG00000007643)	ENSMAUG00000018084	Nr4a2 (ENSMAUG00000009371) #21	Gpd2 (ENSMAUG00000015110) #22	Galnt5 (ENSMAUG00000015690) #23	Ermn (ENSMAUG00000017936) #24	Cytip (ENSMAUG00000018649) #25	Acvr1c (ENSMAUG00000018969) #26	Upp2 (ENSMAUG00000000231) #28	Ccdc148 (ENSMAUG00000000409) #29	Pkp4 (ENSMAUG00000019677) #30	Dapl1 (ENSMAUG00000007222) #31	Tanc1 (ENSMAUG00000016219) #32	Wdsub1 (ENSMAUG00000002168) #33	ENSMAUG00000007486 #34	ENSMAUG00000008617 #34	Ly75 (ENSMAUG00000015663) ##37	Pla2r1 (ENSMAUG00000002027) ##37	Itgb6 (ENSMAUG00000013668)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Prairie vole	MODERN SPECIES	12	Rbm43 (ENSMOCG00000007686)	ENSMOCG00000011562	Tnfaip6 (ENSMOCG00000003915)	Rif1 (ENSMOCG00000009381)	Neb (ENSMOCG00000022729)	Arl5a (ENSMOCG00000019795)	Cacnb4 (ENSMOCG00000022468)	Stam2 (ENSMOCG00000003177)	Fmnl2 (ENSMOCG00000022812)	Prpf40a (ENSMOCG00000009517)	Arl6ip6 (ENSMOCG00000016947)	Rprm (ENSMOCG00000002172)	Galnt13 (ENSMOCG00000014596)	Kcnj3 (ENSMOCG00000020988)	Nr4a2 (ENSMOCG00000004312) #21	Gpd2 (ENSMOCG00000022538) #22	Galnt5 (ENSMOCG00000018686) #23	Ermn (ENSMOCG00000022625) #24	Cytip (ENSMOCG00000016003) #25	Acvr1c (ENSMOCG00000021159) #26	Acvr1 (ENSMOCG00000014737) #27	Upp2 (ENSMOCG00000013921) #28	Ccdc148 (ENSMOCG00000003566) #29	ENSMOCG00000005550	Pkp4 (ENSMOCG00000015021) #30	Dapl1 (ENSMOCG00000022472) #31	Tanc1 (ENSMOCG00000008681) #32	Wdsub1 (ENSMOCG00000021664) #33	Baz2b (ENSMOCG00000004160) #34	Marchf7 (ENSMOCG00000005095) #36	Cd302 (ENSMOCG00000020178) #37
Northern American deer mouse	MODERN SPECIES	17	Neb (ENSPEMG00000011241)	ENSPEMG00000010335	Cacnb4 (ENSPEMG00000000044)	Stam2 (ENSPEMG00000012476)	Fmnl2 (ENSPEMG00000021308)	Prpf40a (ENSPEMG00000020838)	Arl6ip6 (ENSPEMG00000001460)	Rprm (ENSPEMG00000014265)	ENSPEMG00000013797	Galnt13 (ENSPEMG00000015185)	ENSPEMG00000012843	Kcnj3 (ENSPEMG00000015278)	ENSPEMG00000027901	Nr4a2 (ENSPEMG00000000011) #21	ENSPEMG00000027857	Gpd2 (ENSPEMG00000020267) #22	Galnt5 (ENSPEMG00000020201) #23	Ermn (ENSPEMG00000026555) #24	Cytip (ENSPEMG00000010824) #25	Acvr1c (ENSPEMG00000008762) #26	Acvr1 (ENSPEMG00000008567) #27	ENSPEMG00000029209	Upp2 (ENSPEMG00000004188) #28	Ccdc148 (ENSPEMG00000016298) #29	Pkp4 (ENSPEMG00000015348) #30	Dapl1 (ENSPEMG00000016737) #31	ENSPEMG00000008774	ENSPEMG00000024402	Tanc1 (ENSPEMG00000006898) #32	Wdsub1 (ENSPEMG00000013163) #33	Baz2b (ENSPEMG00000011049) #34
Murinae	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Mus	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Mus_A	ANCESTRAL SPECIES		ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
Mus_C	ANCESTRAL SPECIES		ENSGT00530000063686.a.b	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00860000136335	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37
spretus	MODERN SPECIES	11	Rbm43 (MGP_SPRETEiJ_G0024473)	Nmi (MGP_SPRETEiJ_G0024474)	Tnfaip6 (MGP_SPRETEiJ_G0024475)	Rif1 (MGP_SPRETEiJ_G0024476)	Neb (MGP_SPRETEiJ_G0024477)	Arl5a (MGP_SPRETEiJ_G0024478)	Cacnb4 (MGP_SPRETEiJ_G0024479)	Stam2 (MGP_SPRETEiJ_G0024480)	Fmnl2 (MGP_SPRETEiJ_G0024481)	Prpf40a (MGP_SPRETEiJ_G0024482)	Arl6ip6 (MGP_SPRETEiJ_G0024483)	Rprm (MGP_SPRETEiJ_G0024484)	Galnt13 (MGP_SPRETEiJ_G0024485)	Kcnj3 (MGP_SPRETEiJ_G0024486)	Nr4a2 (MGP_SPRETEiJ_G0024487) #21	Gpd2 (MGP_SPRETEiJ_G0024488) #22	Galnt5 (MGP_SPRETEiJ_G0024489) #23	Ermn (MGP_SPRETEiJ_G0024490) #24	Cytip (MGP_SPRETEiJ_G0024491) #25	Acvr1c (MGP_SPRETEiJ_G0024492) #26	Acvr1 (MGP_SPRETEiJ_G0024493) #27	MGP_SPRETEiJ_G0024494	Upp2 (MGP_SPRETEiJ_G0024495) #28	Ccdc148 (MGP_SPRETEiJ_G0024496) #29	MGP_SPRETEiJ_G0024497	Pkp4 (MGP_SPRETEiJ_G0024498) #30	Dapl1 (MGP_SPRETEiJ_G0024499) #31	Tanc1 (MGP_SPRETEiJ_G0024500) #32	Wdsub1 (MGP_SPRETEiJ_G0024501) #33	Baz2b (MGP_SPRETEiJ_G0024502) #34	Marchf7 (MGP_SPRETEiJ_G0024503) #36
Steppe mouse	MODERN SPECIES	2744															Nr4a2 (ENSMSIG00000032191) #21	Gpd2 (ENSMSIG00000032187) #22
Mouse	MODERN SPECIES	11	Rbm43 (ENSMUSG00000036249)	Nmi (ENSMUSG00000026946)	Tnfaip6 (ENSMUSG00000053475)	Rif1 (ENSMUSG00000036202)	Neb (ENSMUSG00000026950)	Arl5a (ENSMUSG00000036093)	Cacnb4 (ENSMUSG00000017412)	Stam2 (ENSMUSG00000055371)	Fmnl2 (ENSMUSG00000036053)	Prpf40a (ENSMUSG00000061136)	Arl6ip6 (ENSMUSG00000026960)	Rprm (ENSMUSG00000075334)	Galnt13 (ENSMUSG00000060988)	Kcnj3 (ENSMUSG00000026824)	Nr4a2 (ENSMUSG00000026826) #21	Gpd2 (ENSMUSG00000026827) #22	Galnt5 (ENSMUSG00000026828) #23	Ermn (ENSMUSG00000026830) #24	Cytip (ENSMUSG00000026832) #25	Acvr1c (ENSMUSG00000026834) #26	Acvr1 (ENSMUSG00000026836) #27	Upp2 (ENSMUSG00000026839) #28	Ccdc148 (ENSMUSG00000036641) #29	Pkp4 (ENSMUSG00000026991) #30	Dapl1 (ENSMUSG00000026989) #31	Tanc1 (ENSMUSG00000035168) #32	Wdsub1 (ENSMUSG00000026988) #33	Baz2b (ENSMUSG00000026987) #34	Marchf7 (ENSMUSG00000026977) #36	Cd302 (ENSMUSG00000060703) #37	Ly75 (ENSMUSG00000026980) ##37
Ryukyu mouse	MODERN SPECIES	11	Rbm43 (MGP_CAROLIEiJ_G0023552)	Nmi (MGP_CAROLIEiJ_G0023553)	Tnfaip6 (MGP_CAROLIEiJ_G0023554)	Rif1 (MGP_CAROLIEiJ_G0023555)	MGP_CAROLIEiJ_G0023556	Arl5a (MGP_CAROLIEiJ_G0023557)	Cacnb4 (MGP_CAROLIEiJ_G0023558)	Stam2 (MGP_CAROLIEiJ_G0023559)	Fmnl2 (MGP_CAROLIEiJ_G0023560)	Prpf40a (MGP_CAROLIEiJ_G0023561)	Arl6ip6 (MGP_CAROLIEiJ_G0023562)	Rprm (MGP_CAROLIEiJ_G0023563)	Galnt13 (MGP_CAROLIEiJ_G0023564)	Kcnj3 (MGP_CAROLIEiJ_G0023565)	Nr4a2 (MGP_CAROLIEiJ_G0023566) #21	Gpd2 (MGP_CAROLIEiJ_G0023567) #22	Galnt5 (MGP_CAROLIEiJ_G0023568) #23	Ermn (MGP_CAROLIEiJ_G0023569) #24	Cytip (MGP_CAROLIEiJ_G0023570) #25	Acvr1c (MGP_CAROLIEiJ_G0023571) #26	Acvr1 (MGP_CAROLIEiJ_G0023572) #27	MGP_CAROLIEiJ_G0023573	Upp2 (MGP_CAROLIEiJ_G0023574) #28	Ccdc148 (MGP_CAROLIEiJ_G0023575) #29	Pkp4 (MGP_CAROLIEiJ_G0023576) #30	Dapl1 (MGP_CAROLIEiJ_G0023577) #31	Tanc1 (MGP_CAROLIEiJ_G0023578) #32	Wdsub1 (MGP_CAROLIEiJ_G0023579) #33	Baz2b (MGP_CAROLIEiJ_G0023580) #34	Marchf7 (MGP_CAROLIEiJ_G0023581) #36	Cd302 (MGP_CAROLIEiJ_G0023582) #37
Shrew mouse	MODERN SPECIES	16	Rbm43 (MGP_PahariEiJ_G0025003)	Nmi (MGP_PahariEiJ_G0025004)	Tnfaip6 (MGP_PahariEiJ_G0025005)	Rif1 (MGP_PahariEiJ_G0025006)	MGP_PahariEiJ_G0025007	Arl5a (MGP_PahariEiJ_G0025008)	Cacnb4 (MGP_PahariEiJ_G0025009)	Stam2 (MGP_PahariEiJ_G0025010)	Fmnl2 (MGP_PahariEiJ_G0025011)	Prpf40a (MGP_PahariEiJ_G0025012)	Arl6ip6 (MGP_PahariEiJ_G0025013)	Rprm (MGP_PahariEiJ_G0025014)	Galnt13 (MGP_PahariEiJ_G0025015)	Kcnj3 (MGP_PahariEiJ_G0025016)	Nr4a2 (MGP_PahariEiJ_G0025017) #21	Gpd2 (MGP_PahariEiJ_G0025018) #22	Galnt5 (MGP_PahariEiJ_G0025019) #23	Ermn (MGP_PahariEiJ_G0025020) #24	Cytip (MGP_PahariEiJ_G0025021) #25	Acvr1c (MGP_PahariEiJ_G0025022) #26	Acvr1 (MGP_PahariEiJ_G0025023) #27	MGP_PahariEiJ_G0025024	Upp2 (MGP_PahariEiJ_G0025025) #28	Ccdc148 (MGP_PahariEiJ_G0025026) #29	Pkp4 (MGP_PahariEiJ_G0025027) #30	Dapl1 (MGP_PahariEiJ_G0025028) #31	Tanc1 (MGP_PahariEiJ_G0025029) #32	Wdsub1 (MGP_PahariEiJ_G0025030) #33	Baz2b (MGP_PahariEiJ_G0025031) #34	Marchf7 (MGP_PahariEiJ_G0025032) #36	Cd302 (MGP_PahariEiJ_G0025033) #37
Rat	MODERN SPECIES	13	AABR07052125.1 (ENSRNOG00000006829)	Arl5a (ENSRNOG00000006839)	Cacnb4 (ENSRNOG00000007666)	Stam2 (ENSRNOG00000027447)	Ndufa2-ps1 (ENSRNOG00000064291)	Dppa5 (ENSRNOG00000029793)	Fmnl2 (ENSRNOG00000055567)	Prpf40a (ENSRNOG00000004864)	Arl6ip6 (ENSRNOG00000005074)	Micos10-ps2 (ENSRNOG00000065751)	Rprm (ENSRNOG00000005109)	Galnt13 (ENSRNOG00000005335)	ENSRNOG00000065543	Kcnj3 (ENSRNOG00000005369)	Nr4a2 (ENSRNOG00000005600) #21	Gpd2 (ENSRNOG00000033824) #22	Galnt5 (ENSRNOG00000004645) #23	Ermn (ENSRNOG00000021472) #24	Cytip (ENSRNOG00000004772) #25	Acvr1c (ENSRNOG00000004828) #26	Acvr1 (ENSRNOG00000005033) #27	Gapdh-ps1 (ENSRNOG00000071205)	Upp2 (ENSRNOG00000005341) #28	Ccdc148 (ENSRNOG00000057740) #29	Pkp4 (ENSRNOG00000005504) #30	Dapl1 (ENSRNOG00000005743) #31	ENSRNOG00000064239	Tanc1 (ENSRNOG00000025394) #32	Wdsub1 (ENSRNOG00000005990) #33	Baz2b (ENSRNOG00000056984) #34	LOC100361645 (ENSRNOG00000031951)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1170															Nr4a2 (ENSNGAG00000001664) #21	Gpd2 (ENSNGAG00000006795) #22	Galnt5 (ENSNGAG00000011264) #23	Ermn (ENSNGAG00000016602) #24	Cytip (ENSNGAG00000017542) #25	Acvr1c (ENSNGAG00000020794) #26	Acvr1 (ENSNGAG00000003562) #27
Lesser Egyptian jerboa	MODERN SPECIES	46	Neb (ENSJJAG00000012568)	ENSJJAG00000015512	Cacnb4 (ENSJJAG00000016900)	Stam2 (ENSJJAG00000009817)	Fmnl2 (ENSJJAG00000021375)	Prpf40a (ENSJJAG00000004636)	Arl6ip6 (ENSJJAG00000019266)	ENSJJAG00000023428	Rprm (ENSJJAG00000012518)	ENSJJAG00000002819	Galnt13 (ENSJJAG00000010483)	Kcnj3 (ENSJJAG00000007165)	ENSJJAG00000022824	Nr4a2 (ENSJJAG00000018362) #21	ENSJJAG00000022660	ENSJJAG00000018801 #22	Galnt5 (ENSJJAG00000004437) #23	Ermn (ENSJJAG00000017224) #24	Cytip (ENSJJAG00000015679) #25	Acvr1c (ENSJJAG00000000840) #26	Acvr1 (ENSJJAG00000021757) #27	Upp2 (ENSJJAG00000019359) #28	Ccdc148 (ENSJJAG00000012594) #29	Pkp4 (ENSJJAG00000010175) #30	Dapl1 (ENSJJAG00000008272) #31	Tanc1 (ENSJJAG00000015166) #32	Wdsub1 (ENSJJAG00000017632) #33	Baz2b (ENSJJAG00000021770) #34	ENSJJAG00000001578	Marchf7 (ENSJJAG00000019998) #36	Cd302 (ENSJJAG00000020650) #37
Kangaroo rat	MODERN SPECIES	324	Nmi (ENSDORG00000024973)	ENSDORG00000028394	Tnfaip6 (ENSDORG00000016446)	Neb (ENSDORG00000004258)	ENSDORG00000003082	Cacnb4 (ENSDORG00000007926)	Stam2 (ENSDORG00000007927)	Fmnl2 (ENSDORG00000029929)	Prpf40a (ENSDORG00000006757)	Arl6ip6 (ENSDORG00000006761)	ENSDORG00000028417	Rprm (ENSDORG00000003407)	Galnt13 (ENSDORG00000011932)	Kcnj3 (ENSDORG00000005402)	Nr4a2 (ENSDORG00000007987) #21	Gpd2 (ENSDORG00000004451) #22	Galnt5 (ENSDORG00000003518) #23	Ermn (ENSDORG00000003519) #24	ENSDORG00000023938	Cytip (ENSDORG00000015983) #25	Acvr1c (ENSDORG00000010112) #26	Acvr1 (ENSDORG00000013457) #27	Upp2 (ENSDORG00000005683) #28	Ccdc148 (ENSDORG00000008724) #29	Pkp4 (ENSDORG00000007017) #30	Dapl1 (ENSDORG00000009147) #31	Tanc1 (ENSDORG00000010962) #32	Wdsub1 (ENSDORG00000005593) #33	Baz2b (ENSDORG00000005595) #34	Marchf7 (ENSDORG00000006639) #36	Cd302 (ENSDORG00000006643) #37
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00530000063686.a.a	ENSGT00940000157201	ENSGT00390000012204	ENSGT00940000154533.b.d	ENSGT00940000154714	ENSGT00950000182837.b.b	ENSGT00940000157055	ENSGT00940000155515.a.b.b	ENSGT00930000150980.a	ENSGT00950000185140	ENSGT00390000009987	ENSGT00390000010523.c.b	ENSGT00940000158904	ENSGT01080000257365.b.a.a.b.a	ENSGT00950000183038.a.b.b.b #21	ENSGT00390000001718 #22	ENSGT00940000159241 #23	ENSGT01090000260082.d.a.a.a.b #24	ENSGT00530000063734.a #25	ENSGT00940000158842 #26	ENSGT00940000160160 #27	ENSGT00940000161094 #28	ENSGT00940000153988.A #29	ENSGT00940000155773.b #30	ENSGT00940000154574.d #31	ENSGT00940000155655.B #32	ENSGT00940000157230 #33	ENSGT00940000155359 #34	ENSGT00530000063836.a #36	ENSGT01050000244842.a.b.a #37	ENSGT01050000244842.a.b.b.a.a.a ##37
Pika	MODERN SPECIES	393																GPD2 (ENSOPRG00000010713) #22
Rabbit	MODERN SPECIES	18	ENSOCUG00000035924	NEB (ENSOCUG00000017458)	ARL5A (ENSOCUG00000035346)	ENSOCUG00000000144	STAM2 (ENSOCUG00000000344)	ENSOCUG00000013216	ENSOCUG00000037766	ENSOCUG00000013239	ENSOCUG00000030282	ARL6IP6 (ENSOCUG00000013257)	RPRM (ENSOCUG00000001688)	GALNT13 (ENSOCUG00000017645)	KCNJ3 (ENSOCUG00000024206)	ENSOCUG00000013788	NR4A2 (ENSOCUG00000000784) #21	GPD2 (ENSOCUG00000009764) #22	ENSOCUG00000021063	GALNT5 (ENSOCUG00000009185) #23	ERMN (ENSOCUG00000009198) #24	CYTIP (ENSOCUG00000009200) #25	ACVR1C (ENSOCUG00000009208) #26	ENSOCUG00000032469	ENSOCUG00000039151	ACVR1 (ENSOCUG00000002439) #27	UPP2 (ENSOCUG00000008498) #28	ENSOCUG00000034761	ENSOCUG00000035971	ENSOCUG00000029444 #29	PKP4 (ENSOCUG00000013466) #30	ENSOCUG00000008620 #31	TANC1 (ENSOCUG00000015107) #32