Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00910000148666	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37
Glires	ANCESTRAL SPECIES	1	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00910000148666	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37
Rodentia	ANCESTRAL SPECIES	1	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00910000148666	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00910000148666	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Degu	MODERN SPECIES	121	BCL9L (ENSODEG00000008521) #7	UPK2 (ENSODEG00000007788) #8	ENSODEG00000007420 #9	CENATAC (ENSODEG00000009222) #10	ENSODEG00000007617 #11	ENSODEG00000007434 #12	SLC37A4 (ENSODEG00000008086) #13	HYOU1 (ENSODEG00000008854) #14	VPS11 (ENSODEG00000007999) #15	HMBS (ENSODEG00000009459) #16	ENSODEG00000019651 #17	ENSODEG00000010500 #18	C2CD2L (ENSODEG00000008352) #19	ENSODEG00000007762 #20	HINFP (ENSODEG00000011292) #21	ABCG4 (ENSODEG00000008192) #22	NLRX1 (ENSODEG00000007636) #23	NHERF4 (ENSODEG00000007000) #24	CCDC153 (ENSODEG00000008452) #25	ENSODEG00000007893 #26	ENSODEG00000007290 #27	MCAM (ENSODEG00000008067) #28	RNF26 (ENSODEG00000007188) #29	C1QTNF5 (ENSODEG00000006895) #30	MFRP (ENSODEG00000007223) #31	ENSODEG00000008794 #32	THY1 (ENSODEG00000008554) #33	ENSODEG00000006811 #34	NECTIN1 (ENSODEG00000006611) #35	TRIM29 (ENSODEG00000008046) #36	OAF (ENSODEG00000007327) #37
Long-tailed chinchilla	MODERN SPECIES	119	CXCR5 (ENSCLAG00000014587)	BCL9L (ENSCLAG00000016475) #7	UPK2 (ENSCLAG00000014907) #8	FOXR1 (ENSCLAG00000017051) #9	CENATAC (ENSCLAG00000014684) #10	RPS25 (ENSCLAG00000011816)	TRAPPC4 (ENSCLAG00000015643) #12	SLC37A4 (ENSCLAG00000015915) #13	HYOU1 (ENSCLAG00000014893) #14	VPS11 (ENSCLAG00000014546) #15	HMBS (ENSCLAG00000012728) #16	H2AX (ENSCLAG00000017944)	DPAGT1 (ENSCLAG00000015469) #18	C2CD2L (ENSCLAG00000014509) #19	HINFP (ENSCLAG00000015648) #21	ABCG4 (ENSCLAG00000012102) #22	NLRX1 (ENSCLAG00000013967) #23	NHERF4 (ENSCLAG00000013388) #24	CCDC153 (ENSCLAG00000014523) #25	CBL (ENSCLAG00000015904) #27	MCAM (ENSCLAG00000016437) #28	C1QTNF5 (ENSCLAG00000013955) #30	RNF26 (ENSCLAG00000017073) #29	MFRP (ENSCLAG00000015767) #31	USP2 (ENSCLAG00000013003)	THY1 (ENSCLAG00000013561) #33	ENSCLAG00000012333 #34	NECTIN1 (ENSCLAG00000012784) #35	TRIM29 (ENSCLAG00000015449) #36	OAF (ENSCLAG00000014022) #37	POU2F3 (ENSCLAG00000014931)
Guinea pig	MODERN SPECIES	19	DDX6 (ENSCPOG00000010587)	CXCR5 (ENSCPOG00000039191)	BCL9L (ENSCPOG00000009787) #7	UPK2 (ENSCPOG00000002222) #8	ENSCPOG00000001855 #9	CENATAC (ENSCPOG00000013290) #10	ENSCPOG00000013298	TRAPPC4 (ENSCPOG00000013301) #12	SLC37A4 (ENSCPOG00000035396) #13	HYOU1 (ENSCPOG00000006451) #14	VPS11 (ENSCPOG00000006459) #15	HMBS (ENSCPOG00000006469) #16	DPAGT1 (ENSCPOG00000006480) #18	C2CD2L (ENSCPOG00000006484) #19	HINFP (ENSCPOG00000006488) #21	ABCG4 (ENSCPOG00000006495) #22	NLRX1 (ENSCPOG00000006501) #23	NHERF4 (ENSCPOG00000022891) #24	CCDC153 (ENSCPOG00000014080) #25	CBL (ENSCPOG00000001063) #27	MCAM (ENSCPOG00000026038) #28	RNF26 (ENSCPOG00000004509) #29	C1QTNF5 (ENSCPOG00000032489) #30	MFRP (ENSCPOG00000004515) #31	USP2 (ENSCPOG00000004520)	THY1 (ENSCPOG00000012275) #33	ENSCPOG00000022924 #34	NECTIN1 (ENSCPOG00000001254) #35	TRIM29 (ENSCPOG00000005979) #36	OAF (ENSCPOG00000037745) #37	POU2F3 (ENSCPOG00000010476)
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000050799	UPK2 (ENSHGLG00000004740) #8	FOXR1 (ENSHGLG00000005140) #9	CENATAC (ENSHGLG00000005504) #10	ENSHGLG00000005841	SLC37A4 (ENSHGLG00000006518) #13	ENSHGLG00000006198 #12	HYOU1 (ENSHGLG00000006941) #14	VPS11 (ENSHGLG00000007268) #15	HMBS (ENSHGLG00000007590) #16	ENSHGLG00000037141	H2AX (ENSHGLG00000048849)	DPAGT1 (ENSHGLG00000008229) #18	C2CD2L (ENSHGLG00000008561) #19	HINFP (ENSHGLG00000008906) #21	ABCG4 (ENSHGLG00000017291) #22	NLRX1 (ENSHGLG00000016390) #23	NHERF4 (ENSHGLG00000016411) #24	CCDC153 (ENSHGLG00000016435) #25	CBL (ENSHGLG00000016461) #27	MCAM (ENSHGLG00000016479) #28	C1QTNF5 (ENSHGLG00000017303) #30	RNF26 (ENSHGLG00000041550) #29	MFRP (ENSHGLG00000016623) #31	USP2 (ENSHGLG00000014829)	THY1 (ENSHGLG00000014880) #33	PVRL1 (ENSHGLG00000043579) #35	TRIM29 (ENSHGLG00000014267) #36	OAF (ENSHGLG00000033618) #37	POU2F3 (ENSHGLG00000014398)	ENSHGLG00000013373
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00910000148666	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Marmotini	ANCESTRAL SPECIES	20	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00910000148666	ENSGT00940000155838 #28	ENSGT00390000016584.o #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Marmotini_b	ANCESTRAL SPECIES	43	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00910000148666	ENSGT00940000155838 #28	ENSGT00390000016584.o #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Squirrel	MODERN SPECIES	142	CXCR5 (ENSSTOG00000025389)	BCL9L (ENSSTOG00000021546) #7	UPK2 (ENSSTOG00000014318) #8	FOXR1 (ENSSTOG00000014321) #9	CENATAC (ENSSTOG00000014325) #10	RPS25 (ENSSTOG00000020783)	TRAPPC4 (ENSSTOG00000014340) #12	SLC37A4 (ENSSTOG00000014345) #13	HYOU1 (ENSSTOG00000014355) #14	VPS11 (ENSSTOG00000014376) #15	HMBS (ENSSTOG00000014409) #16	H2AX (ENSSTOG00000014429)	DPAGT1 (ENSSTOG00000014431) #18	ENSSTOG00000014438 #19	HINFP (ENSSTOG00000014457) #21	ABCG4 (ENSSTOG00000014465) #22	NLRX1 (ENSSTOG00000014477) #23	CCDC153 (ENSSTOG00000014500) #25	CBL (ENSSTOG00000005298) #27	MCAM (ENSSTOG00000019932) #28	ENSSTOG00000026036 #29	C1QTNF5 (ENSSTOG00000022915) #30	MFRP (ENSSTOG00000005406) #31	USP2 (ENSSTOG00000005428)	THY1 (ENSSTOG00000005455) #33	NECTIN1 (ENSSTOG00000029172) #35	TRIM29 (ENSSTOG00000001978) #36	OAF (ENSSTOG00000026759) #37	POU2F3 (ENSSTOG00000015839)	TLCD5 (ENSSTOG00000022791)	ARHGEF12 (ENSSTOG00000015856)
Arctic ground squirrel	MODERN SPECIES	291									HYOU1 (ENSUPAG00010018291) #14	VPS11 (ENSUPAG00010018354) #15	HMBS (ENSUPAG00010018365) #16	H2AX (ENSUPAG00010018395)	DPAGT1 (ENSUPAG00010018397) #18	C2CD2L (ENSUPAG00010018410) #19	HINFP (ENSUPAG00010018430) #21	ABCG4 (ENSUPAG00010018446) #22	NLRX1 (ENSUPAG00010018469) #23	NHERF4 (ENSUPAG00010018496) #24	CCDC153 (ENSUPAG00010018519) #25	CBL (ENSUPAG00010018560) #27	ENSUPAG00010018655	MCAM (ENSUPAG00010018664) #28	ENSUPAG00010018736 #29	C1QTNF5 (ENSUPAG00010018740) #30	MFRP (ENSUPAG00010018750) #31	USP2 (ENSUPAG00010018785)	THY1 (ENSUPAG00010018968) #33	NECTIN1 (ENSUPAG00010018985) #35	TRIM29 (ENSUPAG00010018992) #36	OAF (ENSUPAG00010019004) #37	POU2F3 (ENSUPAG00010019015)
Alpin marmot	MODERN SPECIES	25	BCL9L (ENSMMMG00000022559) #7	ENSMMMG00000022558	UPK2 (ENSMMMG00000022555) #8	FOXR1 (ENSMMMG00000022553) #9	CENATAC (ENSMMMG00000022547) #10	ENSMMMG00000022541	ENSMMMG00000022537 #12	SLC37A4 (ENSMMMG00000022523) #13	HYOU1 (ENSMMMG00000022491) #14	VPS11 (ENSMMMG00000022484) #15	HMBS (ENSMMMG00000022472) #16	H2AX (ENSMMMG00000022469)	DPAGT1 (ENSMMMG00000022467) #18	C2CD2L (ENSMMMG00000022455) #19	HINFP (ENSMMMG00000022437) #21	ABCG4 (ENSMMMG00000022429) #22	NLRX1 (ENSMMMG00000022409) #23	NHERF4 (ENSMMMG00000022402) #24	CCDC153 (ENSMMMG00000022391) #25	CBL (ENSMMMG00000022366) #27	MCAM (ENSMMMG00000022337) #28	ENSMMMG00000022331 #29	C1QTNF5 (ENSMMMG00000022321) #30	MFRP (ENSMMMG00000022302) #31	USP2 (ENSMMMG00000022252)	THY1 (ENSMMMG00000022247) #33	NECTIN1 (ENSMMMG00000022229) #35	TRIM29 (ENSMMMG00000022209) #36	OAF (ENSMMMG00000022206) #37	POU2F3 (ENSMMMG00000022201)	TLCD5 (ENSMMMG00000022200)
Eurasian red squirrel	MODERN SPECIES	2	DDX6 (ENSSVLG00005014076)	CXCR5 (ENSSVLG00005014130)	BCL9L (ENSSVLG00005014178) #7	UPK2 (ENSSVLG00005014262) #8	FOXR1 (ENSSVLG00005014333) #9	ENSSVLG00005014434	ENSSVLG00005014518 #12	SLC37A4 (ENSSVLG00005014603) #13	HYOU1 (ENSSVLG00005014785) #14	VPS11 (ENSSVLG00005014920) #15	HMBS (ENSSVLG00005015185) #16	H2AX (ENSSVLG00005015472)	DPAGT1 (ENSSVLG00005015493) #18	C2CD2L (ENSSVLG00005015549) #19	HINFP (ENSSVLG00005015602) #21	ABCG4 (ENSSVLG00005015649) #22	NLRX1 (ENSSVLG00005015691) #23	NHERF4 (ENSSVLG00005015805) #24	CCDC153 (ENSSVLG00005016066) #25	CBL (ENSSVLG00005016142) #27	ENSSVLG00005016208	ENSSVLG00005016245	ENSSVLG00005016282	MCAM (ENSSVLG00005016303) #28	RNF26 (ENSSVLG00005016333) #29	C1QTNF5 (ENSSVLG00005016350) #30	MFRP (ENSSVLG00005016384) #31	USP2 (ENSSVLG00005016536)	THY1 (ENSSVLG00005016800) #33	ENSSVLG00005016845	NECTIN1 (ENSSVLG00005016885) #35
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Muroidea	ANCESTRAL SPECIES	29	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Cricetidae	ANCESTRAL SPECIES	4	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Cricetinae	ANCESTRAL SPECIES	6	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Golden Hamster	MODERN SPECIES	635	Cxcr5 (ENSMAUG00000009745)	Bcl9l (ENSMAUG00000010868) #7	Upk2 (ENSMAUG00000008297) #8	ENSMAUG00000007602 #9	Ccdc84 (ENSMAUG00000017579) #10	ENSMAUG00000015338	Trappc4 (ENSMAUG00000002801) #12	Slc37a4 (ENSMAUG00000014974) #13	Hyou1 (ENSMAUG00000013000) #14	Vps11 (ENSMAUG00000011609) #15	Hmbs (ENSMAUG00000020903) #16	H2ax (ENSMAUG00000009744)	Dpagt1 (ENSMAUG00000000991) #18	C2cd2l (ENSMAUG00000021418) #19	Hinfp (ENSMAUG00000003103) #21	Abcg4 (ENSMAUG00000009172) #22	Nherf4 (ENSMAUG00000016271) #24	Ccdc153 (ENSMAUG00000008442) #25	ENSMAUG00000022099 #27	Mcam (ENSMAUG00000018109) #28	C1qtnf5 (ENSMAUG00000002647) #30	Mfrp (ENSMAUG00000019232) #31	ENSMAUG00000021537	Thy1 (ENSMAUG00000012348) #33	Nectin1 (ENSMAUG00000008955) #35	Trim29 (ENSMAUG00000016385) #36	Oaf (ENSMAUG00000010047) #37	ENSMAUG00000010627	Pou2f3 (ENSMAUG00000016359)	Tlcd5 (ENSMAUG00000018827)	Arhgef12 (ENSMAUG00000013007)
Chinese hamster chok1gshd	MODERN SPECIES	284	Treh (ENSCGRG00001023761)	Ddx6 (ENSCGRG00001023465)	Cxcr5 (ENSCGRG00001024674)	Bcl9l (ENSCGRG00001024818) #7	Upk2 (ENSCGRG00001014244) #8	Ccdc84 (ENSCGRG00001014231) #10	Rps25 (ENSCGRG00001019533)	Trappc4 (ENSCGRG00001017744) #12	Slc37a4 (ENSCGRG00001018650) #13	Hyou1 (ENSCGRG00001003994) #14	Vps11 (ENSCGRG00001005180) #15	Hmbs (ENSCGRG00001020303) #16	DPAGT1 (ENSCGRG00001004728) #18	C2cd2l (ENSCGRG00001011985) #19	Hinfp (ENSCGRG00001010851) #21	Abcg4 (ENSCGRG00001017119) #22	Nlrx1 (ENSCGRG00001006742) #23	Nherf4 (ENSCGRG00001021077) #24	Ccdc153 (ENSCGRG00001023411) #25	Cbl (ENSCGRG00001019559) #27	Mcam (ENSCGRG00001014043) #28	ENSCGRG00001005426 #29	C1qtnf5 (ENSCGRG00001016723) #30	Mfrp (ENSCGRG00001017647) #31	Usp2 (ENSCGRG00001016286)	Thy1 (ENSCGRG00001001406) #33	ENSCGRG00001011094 #34	Nectin1 (ENSCGRG00001008640) #35	Trim29 (ENSCGRG00001014242) #36	Oaf (ENSCGRG00001018323) #37	Pou2f3 (ENSCGRG00001012087)
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627	ENSGT00390000008162
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	13	Cxcr5 (ENSMOCG00000004685)	Bcl9l (ENSMOCG00000003894) #7	Upk2 (ENSMOCG00000017361) #8	Ccdc84 (ENSMOCG00000003483) #10	ENSMOCG00000004656	Trappc4 (ENSMOCG00000004337) #12	Slc37a4 (ENSMOCG00000018711) #13	Hyou1 (ENSMOCG00000006614) #14	Vps11 (ENSMOCG00000008967) #15	Hmbs (ENSMOCG00000021501) #16	H2ax (ENSMOCG00000019928)	Dpagt1 (ENSMOCG00000018226) #18	C2cd2l (ENSMOCG00000007032) #19	Hinfp (ENSMOCG00000021370) #21	ENSMOCG00000016515 #22	ENSMOCG00000021558 #22	Nlrx1 (ENSMOCG00000001642) #23	Nherf4 (ENSMOCG00000018814) #24	Ccdc153 (ENSMOCG00000016546) #25	Cbl (ENSMOCG00000008619) #27	Mcam (ENSMOCG00000020037) #28	C1qtnf5 (ENSMOCG00000016995) #30	Mfrp (ENSMOCG00000021315) #31	Usp2 (ENSMOCG00000011563)	Thy1 (ENSMOCG00000000954) #33	ENSMOCG00000012324 #34	Nectin1 (ENSMOCG00000005304) #35	Trim29 (ENSMOCG00000005539) #36	Oaf (ENSMOCG00000018469) #37	Pou2f3 (ENSMOCG00000015293)	Tlcd5 (ENSMOCG00000015604)
Prairie vole	MODERN SPECIES	13	ENSMOCG00000005250	Cxcr5 (ENSMOCG00000004685)	Bcl9l (ENSMOCG00000003894) #7	Upk2 (ENSMOCG00000017361) #8	Ccdc84 (ENSMOCG00000003483) #10	ENSMOCG00000004656	Trappc4 (ENSMOCG00000004337) #12	Slc37a4 (ENSMOCG00000018711) #13	Hyou1 (ENSMOCG00000006614) #14	Vps11 (ENSMOCG00000008967) #15	Hmbs (ENSMOCG00000021501) #16	H2ax (ENSMOCG00000019928)	Dpagt1 (ENSMOCG00000018226) #18	C2cd2l (ENSMOCG00000007032) #19	Hinfp (ENSMOCG00000021370) #21	ENSMOCG00000016515 #22	ENSMOCG00000021558 #22	Nlrx1 (ENSMOCG00000001642) #23	Nherf4 (ENSMOCG00000018814) #24	Ccdc153 (ENSMOCG00000016546) #25	Cbl (ENSMOCG00000008619) #27	Mcam (ENSMOCG00000020037) #28	C1qtnf5 (ENSMOCG00000016995) #30	Mfrp (ENSMOCG00000021315) #31	Usp2 (ENSMOCG00000011563)	Thy1 (ENSMOCG00000000954) #33	ENSMOCG00000012324 #34	Nectin1 (ENSMOCG00000005304) #35	Trim29 (ENSMOCG00000005539) #36	Oaf (ENSMOCG00000018469) #37	Pou2f3 (ENSMOCG00000015293)
Northern American deer mouse	MODERN SPECIES	20	Cxcr5 (ENSPEMG00000001412)	Bcl9l (ENSPEMG00000024270) #7	Upk2 (ENSPEMG00000000692) #8	Foxr1 (ENSPEMG00000007335) #9	Ccdc84 (ENSPEMG00000016054) #10	Rps25 (ENSPEMG00000001128)	Trappc4 (ENSPEMG00000024221) #12	Slc37a4 (ENSPEMG00000014537) #13	Hyou1 (ENSPEMG00000009007) #14	Vps11 (ENSPEMG00000015418) #15	Hmbs (ENSPEMG00000002365) #16	H2ax (ENSPEMG00000027129)	Dpagt1 (ENSPEMG00000008668) #18	C2cd2l (ENSPEMG00000007030) #19	Hinfp (ENSPEMG00000024103) #21	Abcg4 (ENSPEMG00000013354) #22	Nlrx1 (ENSPEMG00000012665) #23	Nherf4 (ENSPEMG00000017700) #24	Ccdc153 (ENSPEMG00000007870) #25	Cbl (ENSPEMG00000023847) #27	Mcam (ENSPEMG00000003786) #28	C1qtnf5 (ENSPEMG00000010725) #30	Mfrp (ENSPEMG00000017956) #31	Usp2 (ENSPEMG00000024068)	Thy1 (ENSPEMG00000025576) #33	Nectin1 (ENSPEMG00000000009) #35	Trim29 (ENSPEMG00000020223) #36	Oaf (ENSPEMG00000019857) #37	Pou2f3 (ENSPEMG00000017517)	Tlcd5 (ENSPEMG00000028823)	Arhgef12 (ENSPEMG00000004297)
Murinae	ANCESTRAL SPECIES	3	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00390000012008 #37	ENSGT00940000157627
Mus	ANCESTRAL SPECIES	4	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00900000143378	ENSGT00390000012008 #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00900000143378	ENSGT00390000012008 #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00900000143378	ENSGT00390000012008 #37
Mus_C	ANCESTRAL SPECIES	8	ENSGT00730000110915.a #7	ENSGT00900000143762	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.a	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33	ENSGT00420000030019 #34	ENSGT00940000156933 #35	ENSGT00940000161416 #36	ENSGT00900000143378	ENSGT00390000012008 #37	ENSGT00940000157627
spretus	MODERN SPECIES	18	Cxcr5 (MGP_SPRETEiJ_G0033258)	Bcl9l (MGP_SPRETEiJ_G0033257) #7	Upk2 (MGP_SPRETEiJ_G0033256) #8	MGP_SPRETEiJ_G0033255 #9	Ccdc84 (MGP_SPRETEiJ_G0033254) #10	Rps25 (MGP_SPRETEiJ_G0033253)	Trappc4 (MGP_SPRETEiJ_G0033252) #12	Slc37a4 (MGP_SPRETEiJ_G0033251) #13	Hyou1 (MGP_SPRETEiJ_G0033250) #14	Vps11 (MGP_SPRETEiJ_G0033249) #15	Hmbs (MGP_SPRETEiJ_G0033248) #16	H2ax (MGP_SPRETEiJ_G0033247)	Dpagt1 (MGP_SPRETEiJ_G0033246) #18	C2cd2l (MGP_SPRETEiJ_G0033245) #19	Hinfp (MGP_SPRETEiJ_G0033244) #21	Abcg4 (MGP_SPRETEiJ_G0033243) #22	Nlrx1 (MGP_SPRETEiJ_G0033242) #23	Nherf4 (MGP_SPRETEiJ_G0033241) #24	Ccdc153 (MGP_SPRETEiJ_G0033240) #25	Cbl (MGP_SPRETEiJ_G0033239) #27	Mcam (MGP_SPRETEiJ_G0033238) #28	C1qtnf5 (MGP_SPRETEiJ_G0033237) #30	Mfrp (MGP_SPRETEiJ_G0033236) #31	Usp2 (MGP_SPRETEiJ_G0033235)	Thy1 (MGP_SPRETEiJ_G0033234) #33	MGP_SPRETEiJ_G0033233 #34	Nectin1 (MGP_SPRETEiJ_G0033232) #35	Trim29 (MGP_SPRETEiJ_G0033231) #36	MGP_SPRETEiJ_G0033230	Oaf (MGP_SPRETEiJ_G0033229) #37	Pou2f3 (MGP_SPRETEiJ_G0033228)
Steppe mouse	MODERN SPECIES	3372	Cxcr5 (ENSMSIG00000007607)	Bcl9l (ENSMSIG00000007566) #7	ENSMSIG00000007556	ENSMSIG00000007385 #8	Ccdc84 (ENSMSIG00000007313) #10	Rps25 (ENSMSIG00000007253)	Trappc4 (ENSMSIG00000007215) #12	Slc37a4 (ENSMSIG00000007152) #13	Hyou1 (ENSMSIG00000007085) #14	Vps11 (ENSMSIG00000007025) #15	Hmbs (ENSMSIG00000006985) #16	H2ax (ENSMSIG00000006973)	Dpagt1 (ENSMSIG00000006925) #18	C2cd2l (ENSMSIG00000006826) #19	Hinfp (ENSMSIG00000006782) #21	Abcg4 (ENSMSIG00000006744) #22	Nlrx1 (ENSMSIG00000006689) #23	Nherf4 (ENSMSIG00000006641) #24	ENSMSIG00000006533 #25	Cbl (ENSMSIG00000006132) #27	Mcam (ENSMSIG00000005960) #28	ENSMSIG00000005943	C1qtnf5 (ENSMSIG00000005880) #30	Mfrp (ENSMSIG00000005799) #31	Usp2 (ENSMSIG00000005680)	Thy1 (ENSMSIG00000005655) #33	ENSMSIG00000005646	Nectin1 (ENSMSIG00000005582) #35	Trim29 (ENSMSIG00000005545) #36	Oaf (ENSMSIG00000005521) #37	Pou2f3 (ENSMSIG00000005446)
Mouse	MODERN SPECIES	18	Cxcr5 (ENSMUSG00000047880)	Bcl9l (ENSMUSG00000063382) #7	Upk2 (ENSMUSG00000041523) #8	Foxr1 (ENSMUSG00000074397) #9	Ccdc84 (ENSMUSG00000043923) #10	Rps25 (ENSMUSG00000009927)	Trappc4 (ENSMUSG00000032112) #12	Slc37a4 (ENSMUSG00000032114) #13	Hyou1 (ENSMUSG00000032115) #14	Vps11 (ENSMUSG00000032127) #15	Hmbs (ENSMUSG00000032126) #16	H2ax (ENSMUSG00000049932)	Dpagt1 (ENSMUSG00000032123) #18	C2cd2l (ENSMUSG00000032120) #19	Hinfp (ENSMUSG00000032119) #21	Abcg4 (ENSMUSG00000032131) #22	Nlrx1 (ENSMUSG00000032109) #23	Nherf4 (ENSMUSG00000032105) #24	Ccdc153 (ENSMUSG00000070306) #25	Cbl (ENSMUSG00000034342) #27	Mcam (ENSMUSG00000032135) #28	C1qtnf5 (ENSMUSG00000079592) #30	Mfrp (ENSMUSG00000034739) #31	Rnf26 (ENSMUSG00000053128) #29	Usp2 (ENSMUSG00000032010)	Gm49380 (ENSMUSG00000111409) #29	Thy1 (ENSMUSG00000032011) #33	Nectin1 (ENSMUSG00000032012) #35	Trim29 (ENSMUSG00000032013) #36	Oaf (ENSMUSG00000032014) #37	Pou2f3 (ENSMUSG00000032015)
Ryukyu mouse	MODERN SPECIES	18	Cxcr5 (MGP_CAROLIEiJ_G0032121)	Bcl9l (MGP_CAROLIEiJ_G0032120) #7	Upk2 (MGP_CAROLIEiJ_G0032119) #8	MGP_CAROLIEiJ_G0032118 #9	Ccdc84 (MGP_CAROLIEiJ_G0032117) #10	MGP_CAROLIEiJ_G0032116	Trappc4 (MGP_CAROLIEiJ_G0032115) #12	Slc37a4 (MGP_CAROLIEiJ_G0032114) #13	MGP_CAROLIEiJ_G0032113 #14	Vps11 (MGP_CAROLIEiJ_G0032112) #15	Hmbs (MGP_CAROLIEiJ_G0032111) #16	H2ax (MGP_CAROLIEiJ_G0032110)	Dpagt1 (MGP_CAROLIEiJ_G0032109) #18	C2cd2l (MGP_CAROLIEiJ_G0032108) #19	Hinfp (MGP_CAROLIEiJ_G0032107) #21	Abcg4 (MGP_CAROLIEiJ_G0032106) #22	Nlrx1 (MGP_CAROLIEiJ_G0032105) #23	Nherf4 (MGP_CAROLIEiJ_G0032104) #24	Ccdc153 (MGP_CAROLIEiJ_G0032103) #25	Cbl (MGP_CAROLIEiJ_G0032102) #27	Mcam (MGP_CAROLIEiJ_G0032101) #28	MGP_CAROLIEiJ_G0032100 #29	C1qtnf5 (MGP_CAROLIEiJ_G0032099) #30	Mfrp (MGP_CAROLIEiJ_G0032098) #31	Usp2 (MGP_CAROLIEiJ_G0032097)	MGP_CAROLIEiJ_G0032096 #29	Thy1 (MGP_CAROLIEiJ_G0032095) #33	MGP_CAROLIEiJ_G0032094 #34	Nectin1 (MGP_CAROLIEiJ_G0032093) #35	Trim29 (MGP_CAROLIEiJ_G0032092) #36	MGP_CAROLIEiJ_G0032091
Shrew mouse	MODERN SPECIES	1	Cxcr5 (MGP_PahariEiJ_G0014990)	Bcl9l (MGP_PahariEiJ_G0014989) #7	Upk2 (MGP_PahariEiJ_G0014988) #8	MGP_PahariEiJ_G0014987 #9	Ccdc84 (MGP_PahariEiJ_G0014986) #10	MGP_PahariEiJ_G0014985	Trappc4 (MGP_PahariEiJ_G0014984) #12	Slc37a4 (MGP_PahariEiJ_G0014983) #13	Hyou1 (MGP_PahariEiJ_G0014982) #14	Vps11 (MGP_PahariEiJ_G0014981) #15	Hmbs (MGP_PahariEiJ_G0014980) #16	H2ax (MGP_PahariEiJ_G0014979)	Dpagt1 (MGP_PahariEiJ_G0014978) #18	C2cd2l (MGP_PahariEiJ_G0014977) #19	Hinfp (MGP_PahariEiJ_G0014976) #21	Abcg4 (MGP_PahariEiJ_G0014975) #22	Nlrx1 (MGP_PahariEiJ_G0014974) #23	Nherf4 (MGP_PahariEiJ_G0014973) #24	Ccdc153 (MGP_PahariEiJ_G0014972) #25	Cbl (MGP_PahariEiJ_G0014971) #27	Mcam (MGP_PahariEiJ_G0014970) #28	MGP_PahariEiJ_G0014969 #29	C1qtnf5 (MGP_PahariEiJ_G0014968) #30	Mfrp (MGP_PahariEiJ_G0014967) #31	Usp2 (MGP_PahariEiJ_G0014966)	MGP_PahariEiJ_G0014965 #29	Thy1 (MGP_PahariEiJ_G0014964) #33	MGP_PahariEiJ_G0014963 #34	Nectin1 (MGP_PahariEiJ_G0014962) #35	Trim29 (MGP_PahariEiJ_G0014961) #36	MGP_PahariEiJ_G0014960
Rat	MODERN SPECIES	18	Bcl9l (ENSRNOG00000012420) #7	AC105645.5 (ENSRNOG00000059654)	Upk2 (ENSRNOG00000043324) #8	Foxr1 (ENSRNOG00000029089) #9	Cenatac (ENSRNOG00000012137) #10	Rps25 (ENSRNOG00000027503)	Trappc4 (ENSRNOG00000011904) #12	Slc37a4 (ENSRNOG00000011361) #13	Hyou1 (ENSRNOG00000010944) #14	Vps11 (ENSRNOG00000010733) #15	Hmbs (ENSRNOG00000010390) #16	H2ax (ENSRNOG00000010386)	Dpagt1 (ENSRNOG00000009799) #18	C2cd2l (ENSRNOG00000009719) #19	Hinfp (ENSRNOG00000009499) #21	Abcg4 (ENSRNOG00000008862) #22	Nlrx1 (ENSRNOG00000052386) #23	Nherf4 (ENSRNOG00000008526) #24	Ccdc153 (ENSRNOG00000039086) #25	Cbl (ENSRNOG00000008444) #27	Mcam (ENSRNOG00000007726) #28	C1qtnf5 (ENSRNOG00000007613) #30	Mfrp (ENSRNOG00000039107) #31	Usp2 (ENSRNOG00000006663)	Thy1 (ENSRNOG00000006604) #33	Nectin1 (ENSRNOG00000006403) #35	Trim29 (ENSRNOG00000021771) #36	Oaf (ENSRNOG00000009243) #37	Pou2f3 (ENSRNOG00000009118)	Tlcd5 (ENSRNOG00000021793)	Arhgef12 (ENSRNOG00000008924)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1889	Bcl9l (ENSNGAG00000013852) #7	ENSNGAG00000017530	Upk2 (ENSNGAG00000021655) #8	ENSNGAG00000024278 #9	Ccdc84 (ENSNGAG00000021133) #10	Rps25 (ENSNGAG00000012376)	Trappc4 (ENSNGAG00000008710) #12	Slc37a4 (ENSNGAG00000011986) #13	ENSNGAG00000012744 #14	Vps11 (ENSNGAG00000023765) #15	Hmbs (ENSNGAG00000016468) #16	H2ax (ENSNGAG00000014449)	Dpagt1 (ENSNGAG00000016347) #18	C2cd2l (ENSNGAG00000022260) #19	Hinfp (ENSNGAG00000001024) #21	Abcg4 (ENSNGAG00000023878) #22	Nlrx1 (ENSNGAG00000016377) #23	Nherf4 (ENSNGAG00000023370) #24	Ccdc153 (ENSNGAG00000020146) #25	Cbl (ENSNGAG00000021221) #27	Mcam (ENSNGAG00000022720) #28	C1qtnf5 (ENSNGAG00000023822) #30	Mfrp (ENSNGAG00000024285) #31	ENSNGAG00000022179 #32	Thy1 (ENSNGAG00000023265) #33	ENSNGAG00000023549 #34	Nectin1 (ENSNGAG00000018208) #35	Trim29 (ENSNGAG00000020925) #36	Oaf (ENSNGAG00000011846) #37	Pou2f3 (ENSNGAG00000012581)	Tlcd5 (ENSNGAG00000016671)
Lesser Egyptian jerboa	MODERN SPECIES	142	Ddx6 (ENSJJAG00000021630)	Cxcr5 (ENSJJAG00000021162)	Bcl9l (ENSJJAG00000020684) #7	Upk2 (ENSJJAG00000020399) #8	Ccdc84 (ENSJJAG00000019698) #10	ENSJJAG00000018883	Trappc4 (ENSJJAG00000018458) #12	Slc37a4 (ENSJJAG00000022735) #13	ENSJJAG00000022453 #14	Vps11 (ENSJJAG00000021923) #15	Hmbs (ENSJJAG00000021216) #16	H2ax (ENSJJAG00000014067)	Dpagt1 (ENSJJAG00000020408) #18	C2cd2l (ENSJJAG00000019350) #19	ENSJJAG00000018587 #21	Abcg4 (ENSJJAG00000018308) #22	Nlrx1 (ENSJJAG00000017225) #23	Nherf4 (ENSJJAG00000016131) #24	Ccdc153 (ENSJJAG00000015748) #25	Cbl (ENSJJAG00000015255) #27	Mcam (ENSJJAG00000014314) #28	C1qtnf5 (ENSJJAG00000014085) #30	Mfrp (ENSJJAG00000013394) #31	ENSJJAG00000012486 #32	Thy1 (ENSJJAG00000012028) #33	ENSJJAG00000014022	ENSJJAG00000016113 #34	Nectin1 (ENSJJAG00000015953) #35	Trim29 (ENSJJAG00000015693) #36	Oaf (ENSJJAG00000015119) #37	Pou2f3 (ENSJJAG00000014254)
Kangaroo rat	MODERN SPECIES	329	ENSDORG00000028223	Ddx6 (ENSDORG00000001037)	Cxcr5 (ENSDORG00000000979)	ENSDORG00000000980 #7	Upk2 (ENSDORG00000000985) #8	Ccdc84 (ENSDORG00000001963) #10	Rps25 (ENSDORG00000001968)	Trappc4 (ENSDORG00000001971) #12	Slc37a4 (ENSDORG00000001972) #13	ENSDORG00000025756 #14	Vps11 (ENSDORG00000001975) #15	Hmbs (ENSDORG00000001976) #16	Dpagt1 (ENSDORG00000001978) #18	ENSDORG00000001979 #19	Hinfp (ENSDORG00000001981) #21	Abcg4 (ENSDORG00000001982) #22	Nlrx1 (ENSDORG00000001985) #23	Nherf4 (ENSDORG00000001987) #24	Ccdc153 (ENSDORG00000001988) #25	ENSDORG00000026565 #27	Mcam (ENSDORG00000014625) #28	ENSDORG00000030084 #29	C1qtnf5 (ENSDORG00000014627) #30	Mfrp (ENSDORG00000014629) #31	ENSDORG00000024719 #32	Thy1 (ENSDORG00000028907) #33	ENSDORG00000023239 #34	Nectin1 (ENSDORG00000000398) #35	Trim29 (ENSDORG00000007322) #36	ENSDORG00000028006 #37	Pou2f3 (ENSDORG00000003563)
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT01050000244848.B.a.a	ENSGT00730000110915.a #7	ENSGT00390000006115 #8	ENSGT00940000162579 #9	ENSGT00390000007799 #10	ENSGT00390000004856.w.a.a.b.a.b	ENSGT00940000153761.B #12	ENSGT00730000111086 #13	ENSGT00940000157686 #14	ENSGT00940000153635.A #15	ENSGT00390000009083 #16	ENSGT01020000230360.c.a	ENSGT00390000011424 #18	ENSGT00530000063764.b #19	ENSGT00870000136508.c.a #21	ENSGT00940000157853 #22	ENSGT00940000159493 #23	ENSGT00950000182849.A.f.a #24	ENSGT00390000016289 #25	ENSGT00940000155772.b #27	ENSGT00940000155838 #28	ENSGT00940000165588	ENSGT00390000016584 #29	ENSGT00940000161353 #30	ENSGT00940000154525.b.b #31	ENSGT00940000161289	ENSGT00390000012352 #33
Rabbit	MODERN SPECIES	556	CXCR5 (ENSOCUG00000025048)	BCL9L (ENSOCUG00000027585) #7	UPK2 (ENSOCUG00000022756) #8	ENSOCUG00000016258 #9	CENATAC (ENSOCUG00000017244) #10	RPS25 (ENSOCUG00000017256)	ENSOCUG00000017261 #12	SLC37A4 (ENSOCUG00000017267) #13	HYOU1 (ENSOCUG00000004239) #14	VPS11 (ENSOCUG00000023621) #15	HMBS (ENSOCUG00000015161) #16	H2AX (ENSOCUG00000037138)	DPAGT1 (ENSOCUG00000023134) #18	C2CD2L (ENSOCUG00000010790) #19	HINFP (ENSOCUG00000010808) #21	ABCG4 (ENSOCUG00000016931) #22	NLRX1 (ENSOCUG00000024892) #23	NHERF4 (ENSOCUG00000016937) #24	CCDC153 (ENSOCUG00000016947) #25	CBL (ENSOCUG00000004808) #27	MCAM (ENSOCUG00000024055) #28	ENSOCUG00000035455	RNF26 (ENSOCUG00000000938) #29	C1QTNF5 (ENSOCUG00000022094) #30	MFRP (ENSOCUG00000027014) #31	USP2 (ENSOCUG00000007759)	THY1 (ENSOCUG00000007753) #33
Pika	MODERN SPECIES	535	CXCR5 (ENSOPRG00000016127)	BCL9L (ENSOPRG00000016129) #7	UPK2 (ENSOPRG00000016169) #8	ENSOPRG00000016177	ENSOPRG00000016181 #10	ENSOPRG00000016194	TRAPPC4 (ENSOPRG00000016204) #12	SLC37A4 (ENSOPRG00000016219) #13	HYOU1 (ENSOPRG00000016236) #14	VPS11 (ENSOPRG00000016268) #15	HMBS (ENSOPRG00000016287) #16	H2AX (ENSOPRG00000016300)	DPAGT1 (ENSOPRG00000016303) #18	C2CD2L (ENSOPRG00000016313) #19	HINFP (ENSOPRG00000016333) #21	ABCG4 (ENSOPRG00000016343) #22	NLRX1 (ENSOPRG00000016353) #23	NHERF4 (ENSOPRG00000016365) #24	ENSOPRG00000016377 #25	CBL (ENSOPRG00000016385) #27	MCAM (ENSOPRG00000016408) #28	ENSOPRG00000016427	USP2 (ENSOPRG00000016443)