Euteleostomi	ANCESTRAL SPECIES	200										ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34
Sarcopterygii	ANCESTRAL SPECIES	64	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000161542
Tetrapoda	ANCESTRAL SPECIES	48	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000161542
Amniota	ANCESTRAL SPECIES	16	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000161542
Mammalia	ANCESTRAL SPECIES	56	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36
Theria	ANCESTRAL SPECIES	20	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Eutheria	ANCESTRAL SPECIES	18	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Boreoeutheria	ANCESTRAL SPECIES	20	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Laurasiatheria	ANCESTRAL SPECIES	19	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Felidae	ANCESTRAL SPECIES	20	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Panthera	ANCESTRAL SPECIES	28	ENSGT00730000111247	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Panthera_a	ANCESTRAL SPECIES	30	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000014814.a.b.a.b.a.a.a #17	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
leopard	MODERN SPECIES	50	TAOK3 (ENSPPRG00000001325) #7	ENSPPRG00000023142 #8	VSIG10 (ENSPPRG00000023355) #9	WSB2 (ENSPPRG00000023660) #10	RFC5 (ENSPPRG00000019410) #11	KSR2 (ENSPPRG00000015997) #12	NOS1 (ENSPPRG00000012064) #13	FBXO21 (ENSPPRG00000006289) #14	TESC (ENSPPRG00000005904) #15	FBXW8 (ENSPPRG00000004859) #16	ENSPPRG00000020490 #17	HRK (ENSPPRG00000020477) #18	RNFT2 (ENSPPRG00000003778) #19	SPRING1 (ENSPPRG00000003188) #20	MED13L (ENSPPRG00000002400) #21	TBX3 (ENSPPRG00000001317) #22	TBX5 (ENSPPRG00000000841) #23	RBM19 (ENSPPRG00000023027) #24	LHX5 (ENSPPRG00000023665) #25	SDSL (ENSPPRG00000024048) #26	SDS (ENSPPRG00000024195) #27	PLBD2 (ENSPPRG00000021714) #28	SLC8B1 (ENSPPRG00000015650) #29	TPCN1 (ENSPPRG00000012227) #30	IQCD (ENSPPRG00000006777) #31	RITA1 (ENSPPRG00000006056) #32	DDX54 (ENSPPRG00000005223) #33	CFAP73 (ENSPPRG00000000949) #34	RASAL1 (ENSPPRG00000022770) #35	DTX1 (ENSPPRG00000013704) #36	OAS2 (ENSPPRG00000012740) #37
lion	MODERN SPECIES	12	TAOK3 (ENSPLOG00000011599) #7	ENSPLOG00000011703 #8	VSIG10 (ENSPLOG00000011753) #9	WSB2 (ENSPLOG00000011842) #10	RFC5 (ENSPLOG00000011992) #11	KSR2 (ENSPLOG00000012116) #12	NOS1 (ENSPLOG00000012240) #13	FBXO21 (ENSPLOG00000012862) #14	TESC (ENSPLOG00000013015) #15	FBXW8 (ENSPLOG00000013118) #16	ENSPLOG00000013314 #17	HRK (ENSPLOG00000013331) #18	RNFT2 (ENSPLOG00000013357) #19	SPRING1 (ENSPLOG00000013419) #20	MED13L (ENSPLOG00000013492) #21	TBX3 (ENSPLOG00000013604) #22	TBX5 (ENSPLOG00000013788) #23	RBM19 (ENSPLOG00000014069) #24	LHX5 (ENSPLOG00000014147) #25	SDSL (ENSPLOG00000014210) #26	SDS (ENSPLOG00000014308) #27	PLBD2 (ENSPLOG00000014397) #28	SLC8B1 (ENSPLOG00000014523) #29	TPCN1 (ENSPLOG00000014719) #30	IQCD (ENSPLOG00000014801) #31	RITA1 (ENSPLOG00000014880) #32	DDX54 (ENSPLOG00000014959) #33	CFAP73 (ENSPLOG00000015047) #34	RASAL1 (ENSPLOG00000015153) #35	DTX1 (ENSPLOG00000015380) #36	OAS2 (ENSPLOG00000015485) #37
Cat	MODERN SPECIES	243	SUDS3 (ENSFCAG00000012316)	TAOK3 (ENSFCAG00000027996) #7	ENSFCAG00000039682 #8	VSIG10 (ENSFCAG00000002276) #9	WSB2 (ENSFCAG00000026080) #10	RFC5 (ENSFCAG00000002274) #11	KSR2 (ENSFCAG00000002273) #12	NOS1 (ENSFCAG00000023164) #13	FBXO21 (ENSFCAG00000002634) #14	TESC (ENSFCAG00000002633) #15	FBXW8 (ENSFCAG00000002632) #16	HRK (ENSFCAG00000043418) #18	RNFT2 (ENSFCAG00000000994) #19	SPRING1 (ENSFCAG00000000993) #20	MED13L (ENSFCAG00000007556) #21	TBX3 (ENSFCAG00000040223) #22	TBX5 (ENSFCAG00000005574) #23	RBM19 (ENSFCAG00000002962) #24	LHX5 (ENSFCAG00000005089) #25	SDSL (ENSFCAG00000005084) #26	SDS (ENSFCAG00000032375) #27	PLBD2 (ENSFCAG00000005078) #28	SLC8B1 (ENSFCAG00000000333) #29	IQCD (ENSFCAG00000000330) #31	TPCN1 (ENSFCAG00000032345) #30	DDX54 (ENSFCAG00000027806) #33	CFAP73 (ENSFCAG00000023634) #34	RASAL1 (ENSFCAG00000000323) #35	DTX1 (ENSFCAG00000022073) #36	OAS2 (ENSFCAG00000000322) #37	OAS3 (ENSFCAG00000000320) ##37
Caniformia	ANCESTRAL SPECIES	9	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Canidae	ANCESTRAL SPECIES	23	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Canis_lupus	ANCESTRAL SPECIES	25	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Dog	MODERN SPECIES	18	HSPB8 (ENSCAFG00845028809)	SRRM4 (ENSCAFG00845028729)	SUDS3 (ENSCAFG00845028294)	TAOK3 (ENSCAFG00845027827) #7	PEBP1 (ENSCAFG00845027706) #8	ENSCAFG00845027395 #10	RFC5 (ENSCAFG00845027138) #11	KSR2 (ENSCAFG00845027012) #12	NOS1 (ENSCAFG00845026722) #13	FBXO21 (ENSCAFG00845026625) #14	TESC (ENSCAFG00845026479) #15	FBXW8 (ENSCAFG00845026220) #16	RNFT2 (ENSCAFG00845025915) #19	C26H12orf49 (ENSCAFG00845025746) #20	MED13L (ENSCAFG00845025123) #21	TBX3 (ENSCAFG00845024752) #22	TBX5 (ENSCAFG00845024632) #23	RBM19 (ENSCAFG00845024316) #24	LHX5 (ENSCAFG00845024211) #25	SDSL (ENSCAFG00845024122) #26	SDS (ENSCAFG00845024052) #27	PLBD2 (ENSCAFG00845023926) #28	SLC8B1 (ENSCAFG00845023423) #29	TPCN1 (ENSCAFG00845023143) #30	IQCD (ENSCAFG00845023086) #31	RITA1 (ENSCAFG00845023030) #32	DDX54 (ENSCAFG00845022665) #33	CFAP73 (ENSCAFG00845022575) #34	RASAL1 (ENSCAFG00845022464) #35	DTX1 (ENSCAFG00845022372) #36	OAS2 (ENSCAFG00845022313) #37
Dingo	MODERN SPECIES	108	TAOK3 (ENSCAFG00020018460) #7	ENSCAFG00020018455 #8	VSIG10 (ENSCAFG00020018453) #9	WSB2 (ENSCAFG00020018447) #10	RFC5 (ENSCAFG00020018442) #11	KSR2 (ENSCAFG00020018393) #12	NOS1 (ENSCAFG00020018301) #13	FBXO21 (ENSCAFG00020018291) #14	TESC (ENSCAFG00020018288) #15	FBXW8 (ENSCAFG00020018218) #16	HRK (ENSCAFG00020018208) #18	ENSCAFG00020018205	RNFT2 (ENSCAFG00020018200) #19	ENSCAFG00020018197 #20	MED13L (ENSCAFG00020017923) #21	TBX3 (ENSCAFG00020017890) #22	TBX5 (ENSCAFG00020017877) #23	RBM19 (ENSCAFG00020017862) #24	LHX5 (ENSCAFG00020017852) #25	SDSL (ENSCAFG00020017846) #26	SDS (ENSCAFG00020017841) #27	PLBD2 (ENSCAFG00020017836) #28	SLC8B1 (ENSCAFG00020017774) #29	TPCN1 (ENSCAFG00020017666) #30	IQCD (ENSCAFG00020017648) #31	RITA1 (ENSCAFG00020017645) #32	DDX54 (ENSCAFG00020017643) #33	CFAP73 (ENSCAFG00020017641) #34	RASAL1 (ENSCAFG00020017636) #35	DTX1 (ENSCAFG00020017631) #36	OAS2 (ENSCAFG00020017625) #37
Red fox	MODERN SPECIES	118	ENSVVUG00000013305	TAOK3 (ENSVVUG00000013249) #7	PEBP1 (ENSVVUG00000013235) #8	VSIG10 (ENSVVUG00000013225) #9	WSB2 (ENSVVUG00000013187) #10	ENSVVUG00000013148 #11	KSR2 (ENSVVUG00000013076) #12	NOS1 (ENSVVUG00000013047) #13	FBXO21 (ENSVVUG00000013028) #14	TESC (ENSVVUG00000013020) #15	FBXW8 (ENSVVUG00000012974) #16	ENSVVUG00000012949	RNFT2 (ENSVVUG00000012906) #19	SPRING1 (ENSVVUG00000012899) #20	MED13L (ENSVVUG00000012842) #21	TBX3 (ENSVVUG00000012807) #22	TBX5 (ENSVVUG00000012784) #23
Caniformia_b	ANCESTRAL SPECIES	29	ENSGT00730000111247	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Mustelinae	ANCESTRAL SPECIES	34	ENSGT00730000111247	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Ferret	MODERN SPECIES	200	SRRM4 (ENSMPUG00000002930)	SUDS3 (ENSMPUG00000002878)	TAOK3 (ENSMPUG00000002869) #7	ENSMPUG00000002861 #8	VSIG10 (ENSMPUG00000002850) #9	WSB2 (ENSMPUG00000002848) #10	RFC5 (ENSMPUG00000002841) #11	KSR2 (ENSMPUG00000002832) #12	NOS1 (ENSMPUG00000002815) #13	FBXO21 (ENSMPUG00000002803) #14	TESC (ENSMPUG00000002796) #15	FBXW8 (ENSMPUG00000002766) #16	RNFT2 (ENSMPUG00000002734) #19	SPRING1 (ENSMPUG00000002731) #20	MED13L (ENSMPUG00000002724) #21	TBX3 (ENSMPUG00000002720) #22	TBX5 (ENSMPUG00000002715) #23	RBM19 (ENSMPUG00000002694) #24	LHX5 (ENSMPUG00000002688) #25	SDSL (ENSMPUG00000002646) #26	SDS (ENSMPUG00000002643) #27	PLBD2 (ENSMPUG00000002635) #28	SLC8B1 (ENSMPUG00000002625) #29	TPCN1 (ENSMPUG00000002608) #30	IQCD (ENSMPUG00000002587) #31	RITA1 (ENSMPUG00000002581) #32	DDX54 (ENSMPUG00000002574) #33	ENSMPUG00000002569	RASAL1 (ENSMPUG00000002562) #35	DTX1 (ENSMPUG00000002559) #36	ENSMPUG00000002558
American mink	MODERN SPECIES	69	SRRM4 (ENSNVIG00000013633)	SUDS3 (ENSNVIG00000013657)	TAOK3 (ENSNVIG00000013693) #7	ENSNVIG00000013756 #8	VSIG10 (ENSNVIG00000013772) #9	WSB2 (ENSNVIG00000013785) #10	RFC5 (ENSNVIG00000013801) #11	KSR2 (ENSNVIG00000013818) #12	NOS1 (ENSNVIG00000013864) #13	FBXO21 (ENSNVIG00000013994) #14	TESC (ENSNVIG00000014050) #15	FBXW8 (ENSNVIG00000014073) #16	RNFT2 (ENSNVIG00000014126) #19	SPRING1 (ENSNVIG00000014171) #20	MED13L (ENSNVIG00000014201) #21	TBX3 (ENSNVIG00000014364) #22	TBX5 (ENSNVIG00000014425) #23	RBM19 (ENSNVIG00000014477) #24	LHX5 (ENSNVIG00000014517) #25	SDSL (ENSNVIG00000014531) #26	SDS (ENSNVIG00000014552) #27	PLBD2 (ENSNVIG00000014570) #28	SLC8B1 (ENSNVIG00000014651) #29	TPCN1 (ENSNVIG00000015004) #30	IQCD (ENSNVIG00000015182) #31	RITA1 (ENSNVIG00000015210) #32	DDX54 (ENSNVIG00000015225) #33	CFAP73 (ENSNVIG00000015300) #34	RASAL1 (ENSNVIG00000015317) #35	DTX1 (ENSNVIG00000015371) #36	OAS2 (ENSNVIG00000015389) #37
Ursidae	ANCESTRAL SPECIES	34	ENSGT00730000111247	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Giant Panda	MODERN SPECIES	3	HSPB8 (ENSAMEG00000016068)	SRRM4 (ENSAMEG00000016072)	SUDS3 (ENSAMEG00000016079)	TAOK3 (ENSAMEG00000016107) #7	ENSAMEG00000016143 #8	VSIG10 (ENSAMEG00000016147) #9	WSB2 (ENSAMEG00000016150) #10	RFC5 (ENSAMEG00000016165) #11	KSR2 (ENSAMEG00000001072) #12	NOS1 (ENSAMEG00000012563) #13	FBXO21 (ENSAMEG00000012529) #14	TESC (ENSAMEG00000012517) #15	ENSAMEG00000012492 #19	SPRING1 (ENSAMEG00000024581) #20	MED13L (ENSAMEG00000012430) #21	TBX3 (ENSAMEG00000023704) #22	TBX5 (ENSAMEG00000001112) #23	RBM19 (ENSAMEG00000008544) #24	LHX5 (ENSAMEG00000008592) #25	SDSL (ENSAMEG00000008612) #26	SDS (ENSAMEG00000008632) #27	PLBD2 (ENSAMEG00000008644) #28	ENSAMEG00000023546 #29	TPCN1 (ENSAMEG00000008697) #30	IQCD (ENSAMEG00000008760) #31	RITA1 (ENSAMEG00000008770) #32	DDX54 (ENSAMEG00000008775) #33	CFAP73 (ENSAMEG00000008813) #34	RASAL1 (ENSAMEG00000008818) #35	DTX1 (ENSAMEG00000008870) #36	OAS2 (ENSAMEG00000008674) #37
Ursus	ANCESTRAL SPECIES	38			ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Polar bear	MODERN SPECIES	153			TAOK3 (ENSUMAG00000011914) #7	ENSUMAG00000011599 #8	VSIG10 (ENSUMAG00000011597) #9	WSB2 (ENSUMAG00000011588) #10	RFC5 (ENSUMAG00000011580) #11	KSR2 (ENSUMAG00000011462) #12	NOS1 (ENSUMAG00000011278) #13	FBXO21 (ENSUMAG00000010948) #14	TESC (ENSUMAG00000010920) #15	FBXW8 (ENSUMAG00000010896) #16	RNFT2 (ENSUMAG00000010877) #19	SPRING1 (ENSUMAG00000010868) #20	MED13L (ENSUMAG00000010839) #21	ENSUMAG00000010833 #22	TBX5 (ENSUMAG00000010829) #23	RBM19 (ENSUMAG00000010816) #24	SDSL (ENSUMAG00000010805) #26	SDS (ENSUMAG00000010800) #27	PLBD2 (ENSUMAG00000010761) #28	SLC8B1 (ENSUMAG00000010685) #29	TPCN1 (ENSUMAG00000010660) #30	IQCD (ENSUMAG00000010651) #31	RITA1 (ENSUMAG00000010648) #32	DDX54 (ENSUMAG00000010245) #33	CFAP73 (ENSUMAG00000010182) #34	RASAL1 (ENSUMAG00000010173) #35	ENSUMAG00000010156 #36	OAS2 (ENSUMAG00000010148) #37	OAS3 (ENSUMAG00000009998) ##37
American black bear	DUPLICATION
American black bear	MODERN SPECIES	9170																ENSUAMG00000000607 #22
American black bear	MODERN SPECIES	6927																ENSUAMG00000014147 #22
Laurasiatheria_c	ANCESTRAL SPECIES	21	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Chiroptera	ANCESTRAL SPECIES	18	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Megabat	MODERN SPECIES	670																TBX3 (ENSPVAG00000008090) #22
Microchiroptera	ANCESTRAL SPECIES	9	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Microbat	MODERN SPECIES	1163											FBXW8 (ENSMLUG00000011935) #16	RNFT2 (ENSMLUG00000011921) #19	ENSMLUG00000011912 #20	ENSMLUG00000023282	MED13L (ENSMLUG00000000740) #21	TBX3 (ENSMLUG00000007567) #22	TBX5 (ENSMLUG00000016530) #23	ENSMLUG00000025310	ENSMLUG00000029166	RBM19 (ENSMLUG00000015075) #24	ENSMLUG00000026858
Greater horseshoe bat	MODERN SPECIES	17	SUDS3 (ENSRFEG00010014068)	TAOK3 (ENSRFEG00010013925) #7	PEBP1 (ENSRFEG00010013879)	VSIG10 (ENSRFEG00010013815) #9	WSB2 (ENSRFEG00010013572) #10	RFC5 (ENSRFEG00010013366) #11	KSR2 (ENSRFEG00010013310) #12	NOS1 (ENSRFEG00010013221) #13	FBXO21 (ENSRFEG00010013116) #14	TESC (ENSRFEG00010012985) #15	FBXW8 (ENSRFEG00010012633) #16	HRK (ENSRFEG00010012609) #18	RNFT2 (ENSRFEG00010012531) #19	ENSRFEG00010012427 #20	MED13L (ENSRFEG00010012345) #21	TBX3 (ENSRFEG00010012101) #22	TBX5 (ENSRFEG00010011722) #23	RBM19 (ENSRFEG00010011645) #24	LHX5 (ENSRFEG00010011588) #25	SDSL (ENSRFEG00010011507) #26	SDS (ENSRFEG00010011450) #27	PLBD2 (ENSRFEG00010011357) #28	SLC8B1 (ENSRFEG00010011191) #29	TPCN1 (ENSRFEG00010011131) #30	IQCD (ENSRFEG00010011054) #31	RITA1 (ENSRFEG00010010954) #32	DDX54 (ENSRFEG00010010884) #33	CFAP73 (ENSRFEG00010010780) #34	RASAL1 (ENSRFEG00010010720) #35	DTX1 (ENSRFEG00010010649) #36	OAS2 (ENSRFEG00010010584) #37
Equus	ANCESTRAL SPECIES	38	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000163122	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Donkey	MODERN SPECIES	28	SUDS3 (ENSEASG00005008761)	TAOK3 (ENSEASG00005008815) #7	PEBP1 (ENSEASG00005035057)	VSIG10 (ENSEASG00005009276) #9	WSB2 (ENSEASG00005009280) #10	RFC5 (ENSEASG00005009285) #11	KSR2 (ENSEASG00005009288) #12	NOS1 (ENSEASG00005009309) #13	FBXO21 (ENSEASG00005009325) #14	ENSEASG00005009332 #15	FBXW8 (ENSEASG00005009346) #16	HRK (ENSEASG00005009380) #18	RNFT2 (ENSEASG00005009385) #19	SPRING1 (ENSEASG00005009390) #20	MED13L (ENSEASG00005009404) #21	TBX3 (ENSEASG00005009417) #22	TBX5 (ENSEASG00005009437) #23	RBM19 (ENSEASG00005009452) #24	LHX5 (ENSEASG00005009460) #25	SDSL (ENSEASG00005009461) #26	SDS (ENSEASG00005009462) #27	PLBD2 (ENSEASG00005009465) #28	ENSEASG00005009471 #29	TPCN1 (ENSEASG00005009481) #30	IQCD (ENSEASG00005009492) #31	RITA1 (ENSEASG00005034493) #32	DDX54 (ENSEASG00005009501) #33	CFAP73 (ENSEASG00005009509) #34	RASAL1 (ENSEASG00005009510) #35	DTX1 (ENSEASG00005009513) #36	OAS2 (ENSEASG00005009515) #37
Horse	MODERN SPECIES	29	SUDS3 (ENSECAG00000023366)	TAOK3 (ENSECAG00000006859) #7	PEBP1 (ENSECAG00000024564)	VSIG10 (ENSECAG00000002661) #9	WSB2 (ENSECAG00000007479) #10	RFC5 (ENSECAG00000015326) #11	KSR2 (ENSECAG00000004582) #12	NOS1 (ENSECAG00000009126) #13	FBXO21 (ENSECAG00000017124) #14	TESC (ENSECAG00000011177) #15	FBXW8 (ENSECAG00000008712) #16	RNFT2 (ENSECAG00000017907) #19	ENSECAG00000020684 #20	MED13L (ENSECAG00000023488) #21	ENSECAG00000046095	TBX3 (ENSECAG00000012861) #22	TBX5 (ENSECAG00000017114) #23	RBM19 (ENSECAG00000023716) #24	LHX5 (ENSECAG00000016915) #25	SDSL (ENSECAG00000022258) #26	SDS (ENSECAG00000024950) #27	PLBD2 (ENSECAG00000009317) #28	SLC8B1 (ENSECAG00000011361) #29	TPCN1 (ENSECAG00000016580) #30	IQCD (ENSECAG00000009388) #31	RITA1 (ENSECAG00000011558) #32	DDX54 (ENSECAG00000012890) #33	CFAP73 (ENSECAG00000009526) #34	RASAL1 (ENSECAG00000009544) #35	DTX1 (ENSECAG00000028399) #36	OAS2 (ENSECAG00000014422) #37
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36
Suina	ANCESTRAL SPECIES	20	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Chacoan peccary	MODERN SPECIES	812	TAOK3 (ENSCWAG00000019977) #7	ENSCWAG00000019965 #8	VSIG10 (ENSCWAG00000019930) #9	WSB2 (ENSCWAG00000019891) #10	RFC5 (ENSCWAG00000019845) #11	KSR2 (ENSCWAG00000019719) #12	NOS1 (ENSCWAG00000019498) #13	FBXO21 (ENSCWAG00000019406) #14	TESC (ENSCWAG00000019322) #15	FBXW8 (ENSCWAG00000019118) #16	HRK (ENSCWAG00000019089) #18	RNFT2 (ENSCWAG00000019061) #19	SPRING1 (ENSCWAG00000019028) #20	ENSCWAG00000019011	MED13L (ENSCWAG00000018938) #21	TBX3 (ENSCWAG00000018843) #22	TBX5 (ENSCWAG00000018802) #23	RBM19 (ENSCWAG00000018770) #24	ENSCWAG00000018743	LHX5 (ENSCWAG00000018709) #25	SDSL (ENSCWAG00000018668) #26	SDS (ENSCWAG00000018612) #27	PLBD2 (ENSCWAG00000018565) #28	DTX1 (ENSCWAG00000018496) #36	RASAL1 (ENSCWAG00000018387) #35	CFAP73 (ENSCWAG00000018332) #34	DDX54 (ENSCWAG00000018290) #33	RITA1 (ENSCWAG00000018231) #32	IQCD (ENSCWAG00000018165) #31	TPCN1 (ENSCWAG00000017970) #30	SLC8B1 (ENSCWAG00000017762) #29
Pig	MODERN SPECIES	5	ENSSSCG00000009851 #8	VSIG10 (ENSSSCG00000009852) #9	ENSSSCG00000050876	WSB2 (ENSSSCG00000009853) #10	RFC5 (ENSSSCG00000009854) #11	KSR2 (ENSSSCG00000009855) #12	NOS1 (ENSSSCG00000009856) #13	FBXO21 (ENSSSCG00000009858) #14	TESC (ENSSSCG00000009859) #15	FBXW8 (ENSSSCG00000009860) #16	HRK (ENSSSCG00000057182) #18	RNFT2 (ENSSSCG00000009862) #19	ENSSSCG00000032447	SPRING1 (ENSSSCG00000035873) #20	MED13L (ENSSSCG00000009864) #21	TBX3 (ENSSSCG00000009865) #22	ENSSSCG00000009866	TBX5 (ENSSSCG00000009867) #23	RBM19 (ENSSSCG00000009868) #24	LHX5 (ENSSSCG00000009869) #25	SDSL (ENSSSCG00000009870) #26	SDS (ENSSSCG00000036865) #27	PLBD2 (ENSSSCG00000009872) #28	DTX1 (ENSSSCG00000009873) #36	RASAL1 (ENSSSCG00000009874) #35	CFAP73 (ENSSSCG00000009875) #34	DDX54 (ENSSSCG00000009876) #33	RITA1 (ENSSSCG00000034479) #32	IQCD (ENSSSCG00000009877) #31	TPCN1 (ENSSSCG00000009879) #30	SLC8B1 (ENSSSCG00000009880) #29
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36
Camelidae	ANCESTRAL SPECIES	81	ENSGT00730000111247	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36
Arabian camel	MODERN SPECIES	25	SUDS3 (ENSCDRG00005017076)	TAOK3 (ENSCDRG00005016981) #7	ENSCDRG00005016952 #8	VSIG10 (ENSCDRG00005016919) #9	WSB2 (ENSCDRG00005016875) #10	RFC5 (ENSCDRG00005016832) #11	KSR2 (ENSCDRG00005016782) #12	NOS1 (ENSCDRG00005016703) #13	FBXO21 (ENSCDRG00005016480) #14	TESC (ENSCDRG00005016358) #15	FBXW8 (ENSCDRG00005015721) #16	RNFT2 (ENSCDRG00005015578) #19	SPRING1 (ENSCDRG00005015535) #20	MED13L (ENSCDRG00005015237) #21	ENSCDRG00005015209	TBX3 (ENSCDRG00005015059) #22	TBX5 (ENSCDRG00005014955) #23	RBM19 (ENSCDRG00005014843) #24	LHX5 (ENSCDRG00005014796) #25	SDSL (ENSCDRG00005014743) #26	SDS (ENSCDRG00005014689) #27	PLBD2 (ENSCDRG00005014620) #28	SLC8B1 (ENSCDRG00005014345) #29	TPCN1 (ENSCDRG00005014193) #30	IQCD (ENSCDRG00005014144) #31	RITA1 (ENSCDRG00005014093) #32	DDX54 (ENSCDRG00005013723) #33	CFAP73 (ENSCDRG00005013686) #34	RASAL1 (ENSCDRG00005013489) #35	DTX1 (ENSCDRG00005013422) #36	C12orf76 (ENSCDRG00005013381)
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Cetacea	ANCESTRAL SPECIES	11	ENSGT00940000155735 #7	ENSGT00940000157251.gb #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000155735 #7	ENSGT00940000157251.gb #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000155735 #7	ENSGT00940000157251.gb.b #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00940000155735 #7	ENSGT00940000157251.gb.b #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00940000163122	ENSGT01010000222890.a.b	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Narwhal	MODERN SPECIES	295	PEBP1 (ENSMMNG00015002271)	ENSMMNG00015002252	VSIG10 (ENSMMNG00015002227) #9	WSB2 (ENSMMNG00015002200) #10	RFC5 (ENSMMNG00015002158) #11	KSR2 (ENSMMNG00015002079) #12	NOS1 (ENSMMNG00015001930) #13	FBXO21 (ENSMMNG00015001831) #14	TESC (ENSMMNG00015001780) #15	FBXW8 (ENSMMNG00015001698) #16	HRK (ENSMMNG00015001673) #18	ENSMMNG00015001657	RNFT2 (ENSMMNG00015001639) #19	SPRING1 (ENSMMNG00015001605) #20	MED13L (ENSMMNG00015001518) #21	TBX3 (ENSMMNG00015001443) #22	TBX5 (ENSMMNG00015001391) #23	RBM19 (ENSMMNG00015001340) #24	LHX5 (ENSMMNG00015001300) #25	SDSL (ENSMMNG00015001275) #26	SDS (ENSMMNG00015001242) #27	PLBD2 (ENSMMNG00015001197) #28	DTX1 (ENSMMNG00015001175) #36	RASAL1 (ENSMMNG00015001118) #35	CFAP73 (ENSMMNG00015001081) #34	DDX54 (ENSMMNG00015001030) #33	RITA1 (ENSMMNG00015000996) #32	IQCD (ENSMMNG00015000965) #31	TPCN1 (ENSMMNG00015000924) #30	SLC8B1 (ENSMMNG00015000851) #29	OAS2 (ENSMMNG00015000524) #37
Beluga whale	MODERN SPECIES	60	ENSDLEG00000007422 #8	ENSDLEG00000020771	VSIG10 (ENSDLEG00000020765) #9	WSB2 (ENSDLEG00000020761) #10	RFC5 (ENSDLEG00000020754) #11	KSR2 (ENSDLEG00000020734) #12	NOS1 (ENSDLEG00000020722) #13	TESC (ENSDLEG00000020713) #15	FBXO21 (ENSDLEG00000020696) #14	FBXW8 (ENSDLEG00000020679) #16	HRK (ENSDLEG00000020676) #18	ENSDLEG00000020672	RNFT2 (ENSDLEG00000020662) #19	CUNH12orf49 (ENSDLEG00000020651) #20	MED13L (ENSDLEG00000020632) #21	TBX3 (ENSDLEG00000020622) #22	TBX5 (ENSDLEG00000020610) #23	RBM19 (ENSDLEG00000020595) #24	LHX5 (ENSDLEG00000020582) #25	SDSL (ENSDLEG00000020575) #26	SDS (ENSDLEG00000020564) #27	PLBD2 (ENSDLEG00000020555) #28	DTX1 (ENSDLEG00000020549) #36	RASAL1 (ENSDLEG00000020505) #35	CFAP73 (ENSDLEG00000020500) #34	DDX54 (ENSDLEG00000020490) #33	RITA1 (ENSDLEG00000020482) #32	IQCD (ENSDLEG00000020479) #31	ENSDLEG00000020477 #29	TPCN1 (ENSDLEG00000020463) #30	ENSDLEG00000020455 #29
Vaquita	MODERN SPECIES	5	ENSPSNG00000016370 #8	VSIG10 (ENSPSNG00000016222) #9	WSB2 (ENSPSNG00000016085) #10	RFC5 (ENSPSNG00000015898) #11	KSR2 (ENSPSNG00000015398) #12	NOS1 (ENSPSNG00000014581) #13	FBXO21 (ENSPSNG00000014177) #14	TESC (ENSPSNG00000013925) #15	FBXW8 (ENSPSNG00000013514) #16	HRK (ENSPSNG00000013461) #18	ENSPSNG00000013414	RNFT2 (ENSPSNG00000013366) #19	SPRING1 (ENSPSNG00000013295) #20	MED13L (ENSPSNG00000013151) #21	ENSPSNG00000013116	TBX3 (ENSPSNG00000013018) #22	TBX5 (ENSPSNG00000012739) #23	RBM19 (ENSPSNG00000010700) #24	LHX5 (ENSPSNG00000010348) #25	SDSL (ENSPSNG00000010254) #26	SDS (ENSPSNG00000010159) #27	PLBD2 (ENSPSNG00000010071) #28	DTX1 (ENSPSNG00000009946) #36	RASAL1 (ENSPSNG00000009321) #35	ENSPSNG00000009137	DDX54 (ENSPSNG00000009086) #33	RITA1 (ENSPSNG00000009034) #32	IQCD (ENSPSNG00000009007) #31	TPCN1 (ENSPSNG00000008966) #30	SLC8B1 (ENSPSNG00000008811) #29	ENSPSNG00000008727 #37
Dolphin	MODERN SPECIES	422																TBX3 (ENSTTRG00000003216) #22
Sperm whale	MODERN SPECIES	854																TBX3 (ENSPCTG00005019561) #22
Blue whale	MODERN SPECIES	5	ENSBMSG00010015755 #8	VSIG10 (ENSBMSG00010015776) #9	ENSBMSG00010015807	WSB2 (ENSBMSG00010015825) #10	RFC5 (ENSBMSG00010015880) #11	KSR2 (ENSBMSG00010015924) #12	NOS1 (ENSBMSG00010016066) #13	FBXO21 (ENSBMSG00010016354) #14	TESC (ENSBMSG00010016432) #15	FBXW8 (ENSBMSG00010016520) #16	HRK (ENSBMSG00010016605) #18	ENSBMSG00010016622	RNFT2 (ENSBMSG00010016637) #19	SPRING1 (ENSBMSG00010016699) #20	MED13L (ENSBMSG00010016783) #21	TBX3 (ENSBMSG00010017076) #22	TBX5 (ENSBMSG00010017170) #23	RBM19 (ENSBMSG00010017256) #24	LHX5 (ENSBMSG00010017275) #25	SDSL (ENSBMSG00010017309) #26	SDS (ENSBMSG00010017352) #27	PLBD2 (ENSBMSG00010017390) #28	DTX1 (ENSBMSG00010017430) #36	RASAL1 (ENSBMSG00010017483) #35	CFAP73 (ENSBMSG00010017801) #34	DDX54 (ENSBMSG00010017844) #33	RITA1 (ENSBMSG00010017883) #32	IQCD (ENSBMSG00010017912) #31	TPCN1 (ENSBMSG00010017969) #30	SLC8B1 (ENSBMSG00010018183) #29	ENSBMSG00010018254
Pecora	ANCESTRAL SPECIES	14	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Yarkand deer	MODERN SPECIES	28	ENSCHYG00000001776 #9	WSB2 (ENSCHYG00000001732) #10	ENSCHYG00000001686 #11	KSR2 (ENSCHYG00000001636) #12	NOS1 (ENSCHYG00000001525) #13	FBXO21 (ENSCHYG00000001435) #14	ENSCHYG00000001393	TESC (ENSCHYG00000001343) #15	HRK (ENSCHYG00000001314) #18	ENSCHYG00000001301	ENSCHYG00000001144 #19	ENSCHYG00000001079 #20	ENSCHYG00000001041	MED13L (ENSCHYG00000000917) #21	ENSCHYG00000000868	TBX3 (ENSCHYG00000000836) #22	TBX5 (ENSCHYG00000000797) #23	RBM19 (ENSCHYG00000000734) #24	ENSCHYG00000000696 ##17	LHX5 (ENSCHYG00000000682) #25	SDSL (ENSCHYG00000000665) #26	SDS (ENSCHYG00000000646) #27	PLBD2 (ENSCHYG00000000615) #28	DTX1 (ENSCHYG00000000601) #36	RASAL1 (ENSCHYG00000000531) #35	CFAP73 (ENSCHYG00000000491) #34	DDX54 (ENSCHYG00000000366) #33	RITA1 (ENSCHYG00000000330) #32	ENSCHYG00000000317 #31	TPCN1 (ENSCHYG00000000285) #30	SLC8B1 (ENSCHYG00000000213) #29
Percora_a	ANCESTRAL SPECIES	17	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Siberian musk deer	MODERN SPECIES	1175	SUDS3 (ENSMMSG00000020439)	TAOK3 (ENSMMSG00000020380) #7	ENSMMSG00000020362 #8	VSIG10 (ENSMMSG00000020331) #9	WSB2 (ENSMMSG00000020204) #10	RFC5 (ENSMMSG00000020129) #11	KSR2 (ENSMMSG00000020005) #12	NOS1 (ENSMMSG00000019709) #13	FBXO21 (ENSMMSG00000019649) #14	TESC (ENSMMSG00000019593) #15	FBXW8 (ENSMMSG00000019538) #16	HRK (ENSMMSG00000019523) #18	RNFT2 (ENSMMSG00000019445) #19	SPRING1 (ENSMMSG00000019408) #20	MED13L (ENSMMSG00000019318) #21	TBX3 (ENSMMSG00000019228) #22	ENSMMSG00000019209	TBX5 (ENSMMSG00000019164) #23	ENSMMSG00000019110	RBM19 (ENSMMSG00000019072) #24	LHX5 (ENSMMSG00000019024) #25	SDSL (ENSMMSG00000018970) #26	SDS (ENSMMSG00000018945) #27	PLBD2 (ENSMMSG00000018894) #28	DTX1 (ENSMMSG00000018853) #36	RASAL1 (ENSMMSG00000018718) #35	CFAP73 (ENSMMSG00000018652) #34	DDX54 (ENSMMSG00000018478) #33	RITA1 (ENSMMSG00000018441) #32	IQCD (ENSMMSG00000018420) #31	TPCN1 (ENSMMSG00000018292) #30
Bovidae	ANCESTRAL SPECIES	17	ENSGT00940000155735 #7	ENSGT00940000157251.kb.a #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Caprinae	ANCESTRAL SPECIES	17	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251.kb.a #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Rambouillet Sheep	MODERN SPECIES	8	HSPB8 (ENSOARG00020010063)	SRRM4 (ENSOARG00020010126)	SUDS3 (ENSOARG00020010261)	ENSOARG00020010362 #7	ENSOARG00020010604 #8	VSIG10 (ENSOARG00020010738) #9	WSB2 (ENSOARG00020010900) #10	RFC5 (ENSOARG00020011072) #11	KSR2 (ENSOARG00020011563) #12	NOS1 (ENSOARG00020011936) #13	FBXO21 (ENSOARG00020012804) #14	TESC (ENSOARG00020012942) #15	HRK (ENSOARG00020013030) #18	C12orf49 (ENSOARG00020013064) #20	MED13L (ENSOARG00020013227) #21	TBX3 (ENSOARG00020014491) #22	TBX5 (ENSOARG00020014733) #23	RBM19 (ENSOARG00020015024) #24	LHX5 (ENSOARG00020015360) #25	SDSL (ENSOARG00020015407) #26	SDS (ENSOARG00020015481) #27	PLBD2 (ENSOARG00020015615) #28	DTX1 (ENSOARG00020015882) #36	CFAP73 (ENSOARG00020016081) #34	DDX54 (ENSOARG00020016141) #33	RITA1 (ENSOARG00020016329) #32	IQCD (ENSOARG00020016405) #31	TPCN1 (ENSOARG00020016480) #30	SLC8B1 (ENSOARG00020017327) #29	OAS2 (ENSOARG00020017574) #37	ENSOARG00020017761 ##37
Goat	MODERN SPECIES	8	ENSCHIG00000017044 #8	ENSCHIG00000005694	VSIG10 (ENSCHIG00000017491) #9	WSB2 (ENSCHIG00000011456) #10	RFC5 (ENSCHIG00000016947) #11	KSR2 (ENSCHIG00000023716) #12	NOS1 (ENSCHIG00000025391) #13	FBXO21 (ENSCHIG00000013377) #14	ENSCHIG00000019388	TESC (ENSCHIG00000026339) #15	FBXW8 (ENSCHIG00000020348) #16	HRK (ENSCHIG00000008647) #18	RNFT2 (ENSCHIG00000022406) #19	SPRING1 (ENSCHIG00000017588) #20	MED13L (ENSCHIG00000017300) #21	TBX3 (ENSCHIG00000012328) #22	TBX5 (ENSCHIG00000023939) #23	RBM19 (ENSCHIG00000014917) #24	LHX5 (ENSCHIG00000022961) #25	SDSL (ENSCHIG00000012156) #26	SDS (ENSCHIG00000021911) #27	PLBD2 (ENSCHIG00000025113) #28	DTX1 (ENSCHIG00000018624) #36	RASAL1 (ENSCHIG00000010017) #35	CFAP73 (ENSCHIG00000013401) #34	DDX54 (ENSCHIG00000026798) #33	RITA1 (ENSCHIG00000010968) #32	IQCD (ENSCHIG00000017847) #31	TPCN1 (ENSCHIG00000027241) #30	SLC8B1 (ENSCHIG00000025545) #29	ENSCHIG00000023778 #37
Bovinae	ANCESTRAL SPECIES	13	ENSGT00940000157251.kb.a #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00970000197126	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Bos	ANCESTRAL SPECIES	14	ENSGT00940000157251.kb.a #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00970000197126	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Bos_a	ANCESTRAL SPECIES	14	ENSGT00940000155735 #7	ENSGT00940000157251.kb.a #8	ENSGT00940000163122	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Domestic yak	MODERN SPECIES	7	SUDS3 (ENSBGRG00000017204)	TAOK3 (ENSBGRG00000017791) #7	ENSBGRG00000018498 #8	ENSBGRG00000018570 #10	RFC5 (ENSBGRG00000010710) #11	KSR2 (ENSBGRG00000011154) #12	NOS1 (ENSBGRG00000011775) #13	FBXO21 (ENSBGRG00000012215) #14	TESC (ENSBGRG00000012499) #15	FBXW8 (ENSBGRG00000012799) #16	HRK (ENSBGRG00000013442) #18	RNFT2 (ENSBGRG00000013482) #19	SPRING1 (ENSBGRG00000013613) #20	MED13L (ENSBGRG00000013849) #21	ENSBGRG00000015091	TBX3 (ENSBGRG00000015175) #22	TBX5 (ENSBGRG00000015496) #23	RBM19 (ENSBGRG00000015721) #24	LHX5 (ENSBGRG00000015862) #25	SDSL (ENSBGRG00000015962) #26	SDS (ENSBGRG00000016001) #27	PLBD2 (ENSBGRG00000016096) #28	DTX1 (ENSBGRG00000016518) #36	RASAL1 (ENSBGRG00000016591) #35	CFAP73 (ENSBGRG00000016833) #34	DDX54 (ENSBGRG00000016939) #33	RITA1 (ENSBGRG00000017024) #32	IQCD (ENSBGRG00000017100) #31	TPCN1 (ENSBGRG00000017228) #30	SLC8B1 (ENSBGRG00000018280) #29	OAS2 (ENSBGRG00000018710) #37
Wild yak	MODERN SPECIES	737																TBX3 (ENSBMUG00000004036) #22	TBX5 (ENSBMUG00000004084) #23	RBM19 (ENSBMUG00000004157) #24
Bos_b	ANCESTRAL SPECIES	13	ENSGT00940000157251.kb.a #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00970000197126	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00940000157433 #29	ENSGT00510000046406.f.b.a.a.d #37
Cow	MODERN SPECIES	8	SUDS3 (ENSBTAG00000019757)	TAOK3 (ENSBTAG00000012550) #7	PEBP1 (ENSBTAG00000018115) #8	WSB2 (ENSBTAG00000007139) #9	RFC5 (ENSBTAG00000007137) #11	KSR2 (ENSBTAG00000044119) #12	NOS1 (ENSBTAG00000002023) #13	FBXO21 (ENSBTAG00000032097) #14	TESC (ENSBTAG00000044078) #15	ENSBTAG00000053074	FBXW8 (ENSBTAG00000036183) #16	ENSBTAG00000037415	RNFT2 (ENSBTAG00000043976) #19	SPRING1 (ENSBTAG00000047139) #20	MED13L (ENSBTAG00000001888) #21	TBX3 (ENSBTAG00000021706) #22	TBX5 (ENSBTAG00000011384) #23	RBM19 (ENSBTAG00000031824) #24	LHX5 (ENSBTAG00000003107) #25	SDSL (ENSBTAG00000008945) #26	SDS (ENSBTAG00000031814) #27	PLBD2 (ENSBTAG00000019040) #28	DTX1 (ENSBTAG00000016738) #36	RASAL1 (ENSBTAG00000016739) #35	CFAP73 (ENSBTAG00000011924) #34	DDX54 (ENSBTAG00000011930) #33	RITA1 (ENSBTAG00000011937) #32	IQCD (ENSBTAG00000001806) #31	TPCN1 (ENSBTAG00000011102) #30	SLC8B1 (ENSBTAG00000011103) #29	OAS2 (ENSBTAG00000014628) #37
Hybrid Bos Indicus	MODERN SPECIES	8	TAOK3 (ENSBIXG00005023697) #7	ENSBIXG00005023724 #8	ENSBIXG00005023844 #10	RFC5 (ENSBIXG00005024039) #11	KSR2 (ENSBIXG00005004124) #12	NOS1 (ENSBIXG00005024235) #13	FBXO21 (ENSBIXG00005024317) #14	TESC (ENSBIXG00005007579) #15	FBXW8 (ENSBIXG00005024524) #16	HRK (ENSBIXG00005024550) #18	ENSBIXG00005024570	RNFT2 (ENSBIXG00005024660) #19	SPRING1 (ENSBIXG00005024707) #20	MED13L (ENSBIXG00005024913) #21	ENSBIXG00005024963	TBX3 (ENSBIXG00005025053) #22	TBX5 (ENSBIXG00005025163) #23	RBM19 (ENSBIXG00005006068) #24	LHX5 (ENSBIXG00005004308) #25	SDSL (ENSBIXG00005004317) #26	SDS (ENSBIXG00005025428) #27	PLBD2 (ENSBIXG00005004336) #28	ENSBIXG00005025488	DTX1 (ENSBIXG00005025525) #36	RASAL1 (ENSBIXG00005025553) #35	CFAP73 (ENSBIXG00005025597) #34	DDX54 (ENSBIXG00005025638) #33	RITA1 (ENSBIXG00005025655) #32	IQCD (ENSBIXG00005004376) #31	TPCN1 (ENSBIXG00005025891) #30	SLC8B1 (ENSBIXG00005026028) #29
American bison	MODERN SPECIES	3351	TAOK3 (ENSBBBG00000003337) #7	PEBP1 (ENSBBBG00000003313)	VSIG10 (ENSBBBG00000014404) #9	WSB2 (ENSBBBG00000014396) #10	RFC5 (ENSBBBG00000014376) #11	KSR2 (ENSBBBG00000014353) #12	NOS1 (ENSBBBG00000009115) #13	FBXO21 (ENSBBBG00000002887) #14	TESC (ENSBBBG00000001445) #15	ENSBBBG00000014180	FBXW8 (ENSBBBG00000014176) #16	HRK (ENSBBBG00000014164) #18	RNFT2 (ENSBBBG00000006988) #19	SPRING1 (ENSBBBG00000014144) #20	MED13L (ENSBBBG00000003188) #21	ENSBBBG00000007982 #22	TBX5 (ENSBBBG00000003168) #23	RBM19 (ENSBBBG00000007074) #24	LHX5 (ENSBBBG00000003132) #25	SDSL (ENSBBBG00000003128) #26	SDS (ENSBBBG00000003119) #27	PLBD2 (ENSBBBG00000003114) #28	ENSBBBG00000014016 #36	RASAL1 (ENSBBBG00000014008) #35	CFAP73 (ENSBBBG00000013966) #34	DDX54 (ENSBBBG00000003054) #33	RITA1 (ENSBBBG00000003034) #32	IQCD (ENSBBBG00000007073) #31	TPCN1 (ENSBBBG00000013906) #30	SLC8B1 (ENSBBBG00000002979) #29	OAS2 (ENSBBBG00000002953) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158066 #22
Hedgehog	MODERN SPECIES	15418																TBX3 (ENSEEUG00000008506) #22
Euarchontoglires	ANCESTRAL SPECIES	20	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Primates	ANCESTRAL SPECIES	22	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Haplorrhini	ANCESTRAL SPECIES	38	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Tarsier	MODERN SPECIES	6872																TBX3 (ENSTSYG00000008994) #22
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Cebidae	ANCESTRAL SPECIES	2	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953.c #24	ENSGT00840000129953.d #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36
Marmoset	MODERN SPECIES	21	KSR2 (ENSCJAG00000009402) #12	NOS1 (ENSCJAG00000009419) #13	FBXO21 (ENSCJAG00000009509) #14	FBXW8 (ENSCJAG00000009513) #16	HRK (ENSCJAG00000038480) #18	RNFT2 (ENSCJAG00000009540) #19	SPRING1 (ENSCJAG00000038586) #20	ENSCJAG00000054270	ENSCJAG00000079564	ENSCJAG00000070165	ENSCJAG00000079162	ENSCJAG00000077109	ENSCJAG00000069182	ENSCJAG00000073606	MED13L (ENSCJAG00000009580) #21	TBX3 (ENSCJAG00000009716) #22	TBX5 (ENSCJAG00000009744) #23	RBM19 (ENSCJAG00000009798) #24	LHX5 (ENSCJAG00000009813) #25	ENSCJAG00000086130	SDSL (ENSCJAG00000038341) #26	SDS (ENSCJAG00000057048) #27	PLBD2 (ENSCJAG00000009859) #28	SLC8B1 (ENSCJAG00000009862) #29	TPCN1 (ENSCJAG00000009898) #30	IQCD (ENSCJAG00000009998) #31	RITA1 (ENSCJAG00000043916) #32	DDX54 (ENSCJAG00000010039) #33	CFAP73 (ENSCJAG00000012751) #34	RASAL1 (ENSCJAG00000012690) #35	DTX1 (ENSCJAG00000037126) #36
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845.b.a #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953.d #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Capuchin	MODERN SPECIES	59	ENSCCAG00000020148 #8	VSIG10 (ENSCCAG00000037355) #9	WSB2 (ENSCCAG00000025279) #10	RFC5 (ENSCCAG00000038027) #11	ENSCCAG00000028521	KSR2 (ENSCCAG00000025231) #12	ENSCCAG00000036678	NOS1 (ENSCCAG00000010156) #13	FBXO21 (ENSCCAG00000028485) #14	ENSCCAG00000030439 #15	FBXW8 (ENSCCAG00000021657) #16	HRK (ENSCCAG00000018280) #18	RNFT2 (ENSCCAG00000030585) #19	SPRING1 (ENSCCAG00000025047) #20	MED13L (ENSCCAG00000037611) #21	TBX3 (ENSCCAG00000021634) #22	TBX5 (ENSCCAG00000025478) #23	ENSCCAG00000028479	SULT4A1 (ENSCCAG00000037619)	PNPLA5 (ENSCCAG00000032715)	PNPLA3 (ENSCCAG00000029754)	SAMM50 (ENSCCAG00000037122)	PARVB (ENSCCAG00000037401)	PARVG (ENSCCAG00000029519)	SHISAL1 (ENSCCAG00000037934)	RTL6 (ENSCCAG00000020482)	PRR5 (ENSCCAG00000027041)	ARHGAP8 (ENSCCAG00000037511)	PHF21B (ENSCCAG00000021660)	NUP50 (ENSCCAG00000030289)	KIAA0930 (ENSCCAG00000035840)
Bolivian squirrel monkey	MODERN SPECIES	90	SUDS3 (ENSSBOG00000034907)	TAOK3 (ENSSBOG00000032744) #7	PEBP1 (ENSSBOG00000025736)	VSIG10 (ENSSBOG00000036249) #9	WSB2 (ENSSBOG00000025618) #10	RFC5 (ENSSBOG00000030812) #11	ENSSBOG00000026256	KSR2 (ENSSBOG00000033625) #12	NOS1 (ENSSBOG00000009305) #13	FBXO21 (ENSSBOG00000030663) #14	TESC (ENSSBOG00000027843) #15	FBXW8 (ENSSBOG00000026849) #16	RNFT2 (ENSSBOG00000027445) #19	SPRING1 (ENSSBOG00000027268) #20	MED13L (ENSSBOG00000029205) #21	TBX3 (ENSSBOG00000029505) #22	TBX5 (ENSSBOG00000025834) #23	ENSSBOG00000021434 #24	LHX5 (ENSSBOG00000029868) #25	SDSL (ENSSBOG00000033491) #26	SDS (ENSSBOG00000029121) #27	PLBD2 (ENSSBOG00000013245) #28	SLC8B1 (ENSSBOG00000024101) #29	TPCN1 (ENSSBOG00000002434) #30	IQCD (ENSSBOG00000030489) #31	RITA1 (ENSSBOG00000029773) #32	DDX54 (ENSSBOG00000028194) #33	CFAP73 (ENSSBOG00000026833) #34	RASAL1 (ENSSBOG00000031546) #35	DTX1 (ENSSBOG00000030409) #36	OAS2 (ENSSBOG00000031252) #37
Mas night monkey	MODERN SPECIES	844	VSIG10 (ENSANAG00000018909) #9	WSB2 (ENSANAG00000029894) #10	RFC5 (ENSANAG00000019333) #11	KSR2 (ENSANAG00000025472) #12	ENSANAG00000036271	ENSANAG00000025506	NOS1 (ENSANAG00000019988) #13	ENSANAG00000031777	FBXO21 (ENSANAG00000024224) #14	TESC (ENSANAG00000033973) #15	FBXW8 (ENSANAG00000028891) #16	HRK (ENSANAG00000012663) #18	RNFT2 (ENSANAG00000028485) #19	SPRING1 (ENSANAG00000034406) #20	MED13L (ENSANAG00000031595) #21	TBX3 (ENSANAG00000030492) #22	TBX5 (ENSANAG00000012808) #23	RBM19 (ENSANAG00000024136) #24	LHX5 (ENSANAG00000006862) #25	SDSL (ENSANAG00000034530) #26	SDS (ENSANAG00000031984) #27	PLBD2 (ENSANAG00000031492) #28	SLC8B1 (ENSANAG00000035804) #29	TPCN1 (ENSANAG00000034915) #30	IQCD (ENSANAG00000013957) #31	RITA1 (ENSANAG00000020137) #32	ENSANAG00000032761 #33	CFAP73 (ENSANAG00000036527) #34	RASAL1 (ENSANAG00000037236) #35	DTX1 (ENSANAG00000020051) #36	OAS2 (ENSANAG00000029234) #37
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00990000205314	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Gorilla	MODERN SPECIES	3	VSIG10 (ENSGGOG00000012229) #9	ENSGGOG00000027267	WSB2 (ENSGGOG00000002578) #10	RFC5 (ENSGGOG00000002574) #11	KSR2 (ENSGGOG00000009740) #12	NOS1 (ENSGGOG00000007481) #13	FBXO21 (ENSGGOG00000010676) #14	TESC (ENSGGOG00000002737) #15	ENSGGOG00000002732	FBXW8 (ENSGGOG00000002728) #16	HRK (ENSGGOG00000006158) #18	ENSGGOG00000044207	RNFT2 (ENSGGOG00000000139) #19	SPRING1 (ENSGGOG00000015690) #20	MED13L (ENSGGOG00000011098) #21	TBX3 (ENSGGOG00000004238) #22	TBX5 (ENSGGOG00000013775) #23	RBM19 (ENSGGOG00000007371) #24	LHX5 (ENSGGOG00000010583) #25	SDSL (ENSGGOG00000010575) #26	SDS (ENSGGOG00000007318) #27	PLBD2 (ENSGGOG00000014649) #28	SLC8B1 (ENSGGOG00000009725) #29	TPCN1 (ENSGGOG00000010443) #30	IQCD (ENSGGOG00000010439) #31	RITA1 (ENSGGOG00000010436) #32	DDX54 (ENSGGOG00000010414) #33	CFAP73 (ENSGGOG00000010405) #34	RASAL1 (ENSGGOG00000010388) #35	DTX1 (ENSGGOG00000010380) #36	ENSGGOG00000040498
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000155735 #7	ENSGT00940000163122.g.a	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Pan	ANCESTRAL SPECIES	4	ENSGT00940000155735 #7	ENSGT00940000163122.g.a	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Chimpanzee	MODERN SPECIES	3	TAOK3 (ENSPTRG00000005513) #7	PEBP1 (ENSPTRG00000005512)	VSIG10 (ENSPTRG00000005511) #9	ENSPTRG00000046998	WSB2 (ENSPTRG00000005510) #10	RFC5 (ENSPTRG00000005509) #11	KSR2 (ENSPTRG00000005507) #12	NOS1 (ENSPTRG00000005506) #13	FBXO21 (ENSPTRG00000005505) #14	TESC (ENSPTRG00000005504) #15	FBXW8 (ENSPTRG00000005503) #16	HRK (ENSPTRG00000005502) #18	RNFT2 (ENSPTRG00000005501) #19	SPRING1 (ENSPTRG00000005500) #20	MED13L (ENSPTRG00000005499) #21	TBX3 (ENSPTRG00000023749) #22	TBX5 (ENSPTRG00000005496) #23	RBM19 (ENSPTRG00000005494) #24	LHX5 (ENSPTRG00000005493) #25	SDSL (ENSPTRG00000005492) #26	SDS (ENSPTRG00000005491) #27	PLBD2 (ENSPTRG00000005490) #28	SLC8B1 (ENSPTRG00000005489) #29	TPCN1 (ENSPTRG00000005486) #30	IQCD (ENSPTRG00000005485) #31	RITA1 (ENSPTRG00000005484) #32	DDX54 (ENSPTRG00000005483) #33	CFAP73 (ENSPTRG00000005482) #34	RASAL1 (ENSPTRG00000005481) #35	DTX1 (ENSPTRG00000005480) #36	ENSPTRG00000046865
Bonobo	MODERN SPECIES	3	TAOK3 (ENSPPAG00000019342) #7	PEBP1 (ENSPPAG00000041904)	VSIG10 (ENSPPAG00000038988) #9	ENSPPAG00000020714	WSB2 (ENSPPAG00000029019) #10	RFC5 (ENSPPAG00000043958) #11	KSR2 (ENSPPAG00000033924) #12	NOS1 (ENSPPAG00000043877) #13	FBXO21 (ENSPPAG00000010881) #14	TESC (ENSPPAG00000043592) #15	FBXW8 (ENSPPAG00000030077) #16	RNFT2 (ENSPPAG00000037001) #19	SPRING1 (ENSPPAG00000033564) #20	ENSPPAG00000008532	MED13L (ENSPPAG00000034928) #21	TBX3 (ENSPPAG00000028666) #22	TBX5 (ENSPPAG00000029451) #23	RBM19 (ENSPPAG00000043712) #24	LHX5 (ENSPPAG00000033715) #25	SDSL (ENSPPAG00000040087) #26	SDS (ENSPPAG00000031571) #27	PLBD2 (ENSPPAG00000027446) #28	SLC8B1 (ENSPPAG00000037307) #29	TPCN1 (ENSPPAG00000035600) #30	IQCD (ENSPPAG00000028542) #31	RITA1 (ENSPPAG00000028844) #32	DDX54 (ENSPPAG00000042178) #33	CFAP73 (ENSPPAG00000030507) #34	RASAL1 (ENSPPAG00000034459) #35	DTX1 (ENSPPAG00000032215) #36	ENSPPAG00000039057
Human	MODERN SPECIES	3	TAOK3 (ENSG00000135090) #7	PEBP1 (ENSG00000089220)	VSIG10 (ENSG00000176834) #9	WSB2 (ENSG00000176871) #10	RFC5 (ENSG00000111445) #11	KSR2 (ENSG00000171435) #12	NOS1 (ENSG00000089250) #13	FBXO21 (ENSG00000135108) #14	TESC (ENSG00000088992) #15	FBXW8 (ENSG00000174989) #16	HRK (ENSG00000135116) #18	RNFT2 (ENSG00000135119) #19	SPRING1 (ENSG00000111412) #20	MAP1LC3B2 (ENSG00000258102)	MED13L (ENSG00000123066) #21	TBX3 (ENSG00000135111) #22	TBX5 (ENSG00000089225) #23	RBM19 (ENSG00000122965) #24	LHX5 (ENSG00000089116) #25	SDSL (ENSG00000139410) #26	SDS (ENSG00000135094) #27	PLBD2 (ENSG00000151176) #28	SLC8B1 (ENSG00000089060) #29	TPCN1 (ENSG00000186815) #30	IQCD (ENSG00000166578) #31	RITA1 (ENSG00000139405) #32	DDX54 (ENSG00000123064) #33	CFAP73 (ENSG00000186710) #34	RASAL1 (ENSG00000111344) #35	DTX1 (ENSG00000135144) #36	OAS2 (ENSG00000111335) #37
Orangutan	MODERN SPECIES	3	PEBP1 (ENSPPYG00000005011)	VSIG10 (ENSPPYG00000005010) #9	WSB2 (ENSPPYG00000005008) #10	RFC5 (ENSPPYG00000005007) #11	KSR2 (ENSPPYG00000005006) #12	NOS1 (ENSPPYG00000005005) #13	ENSPPYG00000005004 #14	ENSPPYG00000005002	FBXW8 (ENSPPYG00000005001) #16	HRK (ENSPPYG00000005000) #18	ENSPPYG00000035428	RNFT2 (ENSPPYG00000004999) #19	SPRING1 (ENSPPYG00000004998) #20	ENSPPYG00000040786	MED13L (ENSPPYG00000004996) #21	TBX3 (ENSPPYG00000004995) #22	ENSPPYG00000007628	TBX5 (ENSPPYG00000004994) #23	RBM19 (ENSPPYG00000004993) #24	ENSPPYG00000034600	LHX5 (ENSPPYG00000004992) #25	SDSL (ENSPPYG00000004991) #26	SDS (ENSPPYG00000004990) #27	PLBD2 (ENSPPYG00000004989) #28	SLC8B1 (ENSPPYG00000004988) #29	TPCN1 (ENSPPYG00000004987) #30	IQCD (ENSPPYG00000004986) #31	RITA1 (ENSPPYG00000004985) #32	DDX54 (ENSPPYG00000004984) #33	CFAP73 (ENSPPYG00000004982) #34	RASAL1 (ENSPPYG00000004981) #35
Gibbon	MODERN SPECIES		TAOK3 (ENSNLEG00000000325) #7	PEBP1 (ENSNLEG00000000322)	VSIG10 (ENSNLEG00000000319) #9	ENSNLEG00000035147	WSB2 (ENSNLEG00000000316) #10	RFC5 (ENSNLEG00000000310) #11	KSR2 (ENSNLEG00000000305) #12	NOS1 (ENSNLEG00000000297) #13	FBXO21 (ENSNLEG00000000288) #14	TESC (ENSNLEG00000000282) #15	FBXW8 (ENSNLEG00000000280) #16	HRK (ENSNLEG00000000278) #18	RNFT2 (ENSNLEG00000000271) #19	SPRING1 (ENSNLEG00000028783) #20	MED13L (ENSNLEG00000000232) #21	TBX3 (ENSNLEG00000000224) #22	TBX5 (ENSNLEG00000000216) #23	RBM19 (ENSNLEG00000000190) #24	ENSNLEG00000000189 #25	SDSL (ENSNLEG00000000185) #26	ENSNLEG00000000183 #27	PLBD2 (ENSNLEG00000000182) #28	ENSNLEG00000033495 #29	ENSNLEG00000000173 #30	IQCD (ENSNLEG00000000171) #31	ENSNLEG00000000169 #32	DDX54 (ENSNLEG00000000162) #33	ENSNLEG00000000161 #34	RASAL1 (ENSNLEG00000000147) #35	DTX1 (ENSNLEG00000000143) #36	OAS2 (ENSNLEG00000000137) #37
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b.e #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Rhinopithecus	ANCESTRAL SPECIES	9	ENSGT00940000155735 #7	ENSGT00940000157251.`b.b #8	ENSGT00940000159876 #9	ENSGT00890000139406.b.e #10	ENSGT00910000147113	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000006788.a.a	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00550000075025.`b.b.a
Golden snub-nosed monkey	MODERN SPECIES	2196									NOS1 (ENSRROG00000030169) #13	FBXO21 (ENSRROG00000043045) #14	TESC (ENSRROG00000031510) #15	FBXW8 (ENSRROG00000043621) #16	RNFT2 (ENSRROG00000029804) #19	SPRING1 (ENSRROG00000043408) #20	MED13L (ENSRROG00000042781) #21	TBX3 (ENSRROG00000038424) #22	TBX5 (ENSRROG00000040458) #23
Black snub-nosed monkey	MODERN SPECIES	1320							RUNX1T1 (ENSRBIG00000038431)	TRIQK (ENSRBIG00000036626)	CIBAR1 (ENSRBIG00000034177)	RBM12B (ENSRBIG00000035046)	TMEM67 (ENSRBIG00000036988)	ENSRBIG00000037246	PDP1 (ENSRBIG00000040244)	CDH17 (ENSRBIG00000039486)	GEM (ENSRBIG00000028966)	TBX3 (ENSRBIG00000033935) #22	TBX5 (ENSRBIG00000033482) #23	RBM19 (ENSRBIG00000041419) #24	LHX5 (ENSRBIG00000044370) #25	SDSL (ENSRBIG00000044033) #26	SDS (ENSRBIG00000032749) #27	PLBD2 (ENSRBIG00000031710) #28	SLC8B1 (ENSRBIG00000029229) #29	TPCN1 (ENSRBIG00000027732) #30	IQCD (ENSRBIG00000019694) #31	RITA1 (ENSRBIG00000037328) #32	DDX54 (ENSRBIG00000032535) #33	CFAP73 (ENSRBIG00000035976) #34
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b.e #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Vervet Monkey	MODERN SPECIES	2	SUDS3 (ENSCSAG00000002303)	TAOK3 (ENSCSAG00000002305) #7	ENSCSAG00000002311 #8	VSIG10 (ENSCSAG00000002314) #9	WSB2 (ENSCSAG00000002316) #10	RFC5 (ENSCSAG00000002317) #11	KSR2 (ENSCSAG00000002318) #12	NOS1 (ENSCSAG00000002321) #13	FBXO21 (ENSCSAG00000002324) #14	TESC (ENSCSAG00000002325) #15	FBXW8 (ENSCSAG00000002326) #16	HRK (ENSCSAG00000018945) #18	RNFT2 (ENSCSAG00000002330) #19	SPRING1 (ENSCSAG00000002334) #20	MED13L (ENSCSAG00000002340) #21	TBX3 (ENSCSAG00000002344) #22	TBX5 (ENSCSAG00000002347) #23	RBM19 (ENSCSAG00000002352) #24	LHX5 (ENSCSAG00000002361) #25	SDSL (ENSCSAG00000002366) #26	SDS (ENSCSAG00000002369) #27	PLBD2 (ENSCSAG00000002390) #28	SLC8B1 (ENSCSAG00000002409) #29	TPCN1 (ENSCSAG00000002421) #30	IQCD (ENSCSAG00000002424) #31	RITA1 (ENSCSAG00000002426) #32	DDX54 (ENSCSAG00000002432) #33	CFAP73 (ENSCSAG00000002435) #34	RASAL1 (ENSCSAG00000002444) #35	DTX1 (ENSCSAG00000002451) #36	OAS2 (ENSCSAG00000002459) #37
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b.e #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b.e #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Olive baboon	MODERN SPECIES	19	NOS1 (ENSPANG00000011448) #13	FBXO21 (ENSPANG00000015722) #14	TESC (ENSPANG00000035302) #15	FBXW8 (ENSPANG00000005792) #16	HRK (ENSPANG00000011294) #18	RNFT2 (ENSPANG00000017080) #19	SPRING1 (ENSPANG00000020756) #20	ENSPANG00000038054	ENSPANG00000040027	ENSPANG00000048811	ENSPANG00000044688	MED13L (ENSPANG00000011475) #21	ENSPANG00000045896	ENSPANG00000040045	ENSPANG00000048645	TBX3 (ENSPANG00000008730) #22	TBX5 (ENSPANG00000016891) #23	ENSPANG00000048733	RBM19 (ENSPANG00000004795) #24	LHX5 (ENSPANG00000019666) #25	SDSL (ENSPANG00000008708) #26	SDS (ENSPANG00000007048) #27	PLBD2 (ENSPANG00000005793) #28	SLC8B1 (ENSPANG00000018414) #29	TPCN1 (ENSPANG00000022958) #30	IQCD (ENSPANG00000017166) #31	RITA1 (ENSPANG00000005344) #32	DDX54 (ENSPANG00000008883) #33	CFAP73 (ENSPANG00000023466) #34	RASAL1 (ENSPANG00000007320) #35	DTX1 (ENSPANG00000009637) #36
Cercopithecinae_d	ANCESTRAL SPECIES	5	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00910000147113	ENSGT00890000139406.b.e #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Sooty mangabey	MODERN SPECIES	192	ENSCATG00000040290	SUDS3 (ENSCATG00000031160)	TAOK3 (ENSCATG00000030311) #7	VSIG10 (ENSCATG00000000876) #9	ENSCATG00000042308 #10	RFC5 (ENSCATG00000013333) #11	KSR2 (ENSCATG00000044499) #12	NOS1 (ENSCATG00000038284) #13	FBXO21 (ENSCATG00000029719) #14	TESC (ENSCATG00000020468) #15	FBXW8 (ENSCATG00000044602) #16	HRK (ENSCATG00000018993) #18	RNFT2 (ENSCATG00000026327) #19	SPRING1 (ENSCATG00000028116) #20	MED13L (ENSCATG00000036337) #21	TBX3 (ENSCATG00000037486) #22	TBX5 (ENSCATG00000030516) #23	RBM19 (ENSCATG00000035841) #24	LHX5 (ENSCATG00000034758) #25	SDSL (ENSCATG00000021932) #26
Drill	MODERN SPECIES	1533																TBX3 (ENSMLEG00000005402) #22	TBX5 (ENSMLEG00000030420) #23
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b.e #10	ENSGT00910000147113	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00910000147486	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Pig-tailed macaque	MODERN SPECIES	78	ENSMNEG00000005092 #8	VSIG10 (ENSMNEG00000032552) #9	ENSMNEG00000031985 #10	ENSMNEG00000043527	RFC5 (ENSMNEG00000030558) #11	KSR2 (ENSMNEG00000043429) #12	NOS1 (ENSMNEG00000035883) #13	FBXO21 (ENSMNEG00000036614) #14	TESC (ENSMNEG00000028592) #15	FBXW8 (ENSMNEG00000031676) #16	HRK (ENSMNEG00000019862) #18	RNFT2 (ENSMNEG00000032083) #19	SPRING1 (ENSMNEG00000022924) #20	ENSMNEG00000025896	MED13L (ENSMNEG00000045568) #21	TBX3 (ENSMNEG00000007721) #22	ENSMNEG00000030416	TBX5 (ENSMNEG00000032669) #23
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b.e #10	ENSGT00550000075072 #11	ENSGT00940000161627.a.a.a.b.b.b.b.a.a.a.a.a.a.a.b.b.b.a.a	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00910000147486	ENSGT00390000013680.a #21	ENSGT01100000263539.a.a.a.a.a.a	ENSGT00940000158066 #22	ENSGT00980000202068.a.a.a	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36
Rhesus	MODERN SPECIES	2	VSIG10 (ENSMMUG00000047499) #9	ENSMMUG00000010236 #10	RFC5 (ENSMMUG00000010235) #11	ENSMMUG00000051051	KSR2 (ENSMMUG00000005421) #12	NOS1 (ENSMMUG00000014027) #13	FBXO21 (ENSMMUG00000017479) #14	TESC (ENSMMUG00000017478) #15	FBXW8 (ENSMMUG00000017475) #16	ENSMMUG00000052329	RNFT2 (ENSMMUG00000001238) #19	SPRING1 (ENSMMUG00000018247) #20	ENSMMUG00000056279	MED13L (ENSMMUG00000001906) #21	ENSMMUG00000062495	TBX3 (ENSMMUG00000015070) #22	ENSMMUG00000062014	ENSMMUG00000053872	TBX5 (ENSMMUG00000016202) #23	RBM19 (ENSMMUG00000010496) #24	LHX5 (ENSMMUG00000061944) #25	SDSL (ENSMMUG00000020665) #26	SDS (ENSMMUG00000004208) #27	PLBD2 (ENSMMUG00000004205) #28	SLC8B1 (ENSMMUG00000006723) #29	TPCN1 (ENSMMUG00000004435) #30	IQCD (ENSMMUG00000001128) #31	RITA1 (ENSMMUG00000056457) #32	DDX54 (ENSMMUG00000021795) #33	CFAP73 (ENSMMUG00000021794) #34	RASAL1 (ENSMMUG00000021793) #35
Crab-eating macaque	MODERN SPECIES	2	VSIG10 (ENSMFAG00000023995) #9	ENSMFAG00000036105 #10	RFC5 (ENSMFAG00000044172) #11	ENSMFAG00000064659	KSR2 (ENSMFAG00000042933) #12	NOS1 (ENSMFAG00000000922) #13	FBXO21 (ENSMFAG00000031531) #14	TESC (ENSMFAG00000046337) #15	FBXW8 (ENSMFAG00000035404) #16	RNFT2 (ENSMFAG00000033209) #19	ENSMFAG00000049963	SPRING1 (ENSMFAG00000055297) #20	ENSMFAG00000048176	MED13L (ENSMFAG00000035438) #21	ENSMFAG00000062014	TBX3 (ENSMFAG00000039129) #22	ENSMFAG00000057740	TBX5 (ENSMFAG00000044723) #23	RBM19 (ENSMFAG00000046091) #24	LHX5 (ENSMFAG00000036692) #25	SDSL (ENSMFAG00000045838) #26	SDS (ENSMFAG00000041743) #27	PLBD2 (ENSMFAG00000040031) #28	SLC8B1 (ENSMFAG00000037941) #29	TPCN1 (ENSMFAG00000035454) #30	IQCD (ENSMFAG00000001483) #31	RITA1 (ENSMFAG00000043305) #32	DDX54 (ENSMFAG00000043636) #33	CFAP73 (ENSMFAG00000032424) #34	RASAL1 (ENSMFAG00000016595) #35	DTX1 (ENSMFAG00000003369) #36
Strepsirrhini	ANCESTRAL SPECIES	19	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Bushbaby	MODERN SPECIES	153	SUDS3 (ENSOGAG00000000226)	TAOK3 (ENSOGAG00000000223) #7	ENSOGAG00000001740 #8	VSIG10 (ENSOGAG00000008203) #9	WSB2 (ENSOGAG00000008202) #10	RFC5 (ENSOGAG00000008195) #11	KSR2 (ENSOGAG00000005825) #12	NOS1 (ENSOGAG00000012381) #13	FBXO21 (ENSOGAG00000012377) #14	TESC (ENSOGAG00000012373) #15	FBXW8 (ENSOGAG00000012368) #16	HRK (ENSOGAG00000033664) #18	RNFT2 (ENSOGAG00000012361) #19	SPRING1 (ENSOGAG00000011926) #20	MED13L (ENSOGAG00000014346) #21	TBX3 (ENSOGAG00000016212) #22	TBX5 (ENSOGAG00000016204) #23	RBM19 (ENSOGAG00000000602) #24	ENSOGAG00000009881	LHX5 (ENSOGAG00000003519) #25	SDSL (ENSOGAG00000015452) #26	SDS (ENSOGAG00000015447) #27	PLBD2 (ENSOGAG00000029910) #28	SLC8B1 (ENSOGAG00000026353) #29	TPCN1 (ENSOGAG00000015440) #30	ENSOGAG00000033479	IQCD (ENSOGAG00000032287) #31	RITA1 (ENSOGAG00000004214) #32	DDX54 (ENSOGAG00000004210) #33	CFAP73 (ENSOGAG00000033970) #34	RASAL1 (ENSOGAG00000004208) #35
Lemuriformes	ANCESTRAL SPECIES	20	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Mouse lemur	MODERN SPECIES	13	TAOK3 (ENSMICG00000005918) #7	ENSMICG00000034007 #8	VSIG10 (ENSMICG00000043987) #9	ENSMICG00000005913 #10	RFC5 (ENSMICG00000005909) #11	KSR2 (ENSMICG00000011038) #12	NOS1 (ENSMICG00000011010) #13	FBXO21 (ENSMICG00000011004) #14	TESC (ENSMICG00000010998) #15	FBXW8 (ENSMICG00000010992) #16	HRK (ENSMICG00000028697) #18	ENSMICG00000034069	RNFT2 (ENSMICG00000010987) #19	SPRING1 (ENSMICG00000010981) #20	MED13L (ENSMICG00000010953) #21	TBX3 (ENSMICG00000046966) #22	TBX5 (ENSMICG00000038251) #23	RBM19 (ENSMICG00000014423) #24	LHX5 (ENSMICG00000046634) #25	SDSL (ENSMICG00000013524) #26	SDS (ENSMICG00000012898) #27	PLBD2 (ENSMICG00000012882) #28	SLC8B1 (ENSMICG00000012282) #29	TPCN1 (ENSMICG00000012265) #30	IQCD (ENSMICG00000029504) #31	RITA1 (ENSMICG00000043183) #32	DDX54 (ENSMICG00000012217) #33	CFAP73 (ENSMICG00000012210) #34	RASAL1 (ENSMICG00000008546) #35	DTX1 (ENSMICG00000008538) #36	OAS2 (ENSMICG00000008532) #37
Lemuriformes_a	ANCESTRAL SPECIES	44								ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Greater bamboo lemur	MODERN SPECIES	81																TBX3 (ENSPSMG00000002316) #22	TBX5 (ENSPSMG00000002243) #23	RBM19 (ENSPSMG00000002054) #24	LHX5 (ENSPSMG00000001923) #25	SDSL (ENSPSMG00000001916) #26	SDS (ENSPSMG00000001905) #27	PLBD2 (ENSPSMG00000001777) #28	SLC8B1 (ENSPSMG00000001728) #29	TPCN1 (ENSPSMG00000001677) #30	IQCD (ENSPSMG00000001610) #31	RITA1 (ENSPSMG00000001600) #32	DDX54 (ENSPSMG00000001555) #33	CFAP73 (ENSPSMG00000001474) #34	RASAL1 (ENSPSMG00000001457) #35	DTX1 (ENSPSMG00000001408) #36	OAS2 (ENSPSMG00000001389) #37
Coquerels sifaka	MODERN SPECIES	933															MED13L (ENSPCOG00000028793) #21	ENSPCOG00000013594 #22	TBX5 (ENSPCOG00000017720) #23	RBM19 (ENSPCOG00000016190) #24	LHX5 (ENSPCOG00000028401) #25	SDSL (ENSPCOG00000028388) #26	SDS (ENSPCOG00000021902) #27	PLBD2 (ENSPCOG00000015183) #28	SLC8B1 (ENSPCOG00000012983) #29	TPCN1 (ENSPCOG00000025194) #30	IQCD (ENSPCOG00000025788) #31	RITA1 (ENSPCOG00000013158) #32	DDX54 (ENSPCOG00000006050) #33	CFAP73 (ENSPCOG00000020698) #34	RASAL1 (ENSPCOG00000020870) #35	DTX1 (ENSPCOG00000013719) #36	OAS2 (ENSPCOG00000023904) #37
Euarchontoglires_A	ANCESTRAL SPECIES	18	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Tree shrew	MODERN SPECIES	7934																TBX3 (ENSTBEG00000014612) #22
Glires	ANCESTRAL SPECIES	19	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Rodentia	ANCESTRAL SPECIES	20	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Rodentia_A	ANCESTRAL SPECIES	19	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Sciuridae	ANCESTRAL SPECIES	24	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000163122	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072.j #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Marmotini	ANCESTRAL SPECIES	52	ENSGT00390000018566	ENSGT00950000183174.A	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072.j #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT01070000255591	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23
Marmotini_b	ANCESTRAL SPECIES	51	ENSGT00390000018566	ENSGT00950000183174.A	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072.j #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT01070000255591	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23
Squirrel	MODERN SPECIES	158	ENSSTOG00000025548	TMEM116 (ENSSTOG00000012686)	ERP29 (ENSSTOG00000024615)	NAA25 (ENSSTOG00000012699)	VSIG10 (ENSSTOG00000025641) #9	WSB2 (ENSSTOG00000004036) #10	RFC5 (ENSSTOG00000004654) #11	KSR2 (ENSSTOG00000022344) #12	NOS1 (ENSSTOG00000028824) #13	FBXO21 (ENSSTOG00000008177) #14	TESC (ENSSTOG00000010300) #15	FBXW8 (ENSSTOG00000015018) #16	RNFT2 (ENSSTOG00000015366) #19	ENSSTOG00000032893 #20	MED13L (ENSSTOG00000016086) #21	TBX3 (ENSSTOG00000009817) #22	TBX5 (ENSSTOG00000003231) #23
Arctic ground squirrel	MODERN SPECIES	42	ERP29 (ENSUPAG00010007062)	NAA25 (ENSUPAG00010007071)	VSIG10 (ENSUPAG00010007113) #9	ENSUPAG00010007120 #10	RFC5 (ENSUPAG00010007126) #11	KSR2 (ENSUPAG00010007146) #12	NOS1 (ENSUPAG00010007188) #13	FBXO21 (ENSUPAG00010007402) #14	TESC (ENSUPAG00010007437) #15	FBXW8 (ENSUPAG00010007448) #16	HRK (ENSUPAG00010007471) #18	RNFT2 (ENSUPAG00010007473) #19	SPRING1 (ENSUPAG00010007486) #20	MED13L (ENSUPAG00010007504) #21	ENSUPAG00010010720	TBX3 (ENSUPAG00010010726) #22	TBX5 (ENSUPAG00010010782) #23	AJAP1 (ENSUPAG00010010794)	NPHP4 (ENSUPAG00010010807)	KCNAB2 (ENSUPAG00010010857)	CHD5 (ENSUPAG00010011025)	ENSUPAG00010011110	RNF207 (ENSUPAG00010011118)	ENSUPAG00010011133	HES3 (ENSUPAG00010011138)	GPR153 (ENSUPAG00010011146)	ACOT7 (ENSUPAG00010011148)	HES2 (ENSUPAG00010011178)	ESPN (ENSUPAG00010011184)	TNFRSF25 (ENSUPAG00010011370)	PLEKHG5 (ENSUPAG00010011398)
Alpin marmot	MODERN SPECIES	82	ERP29 (ENSMMMG00000005343)	NAA25 (ENSMMMG00000005354)	VSIG10 (ENSMMMG00000005386) #9	WSB2 (ENSMMMG00000005407) #10	RFC5 (ENSMMMG00000005433) #11	KSR2 (ENSMMMG00000005476) #12	NOS1 (ENSMMMG00000005518) #13	FBXO21 (ENSMMMG00000005698) #14	TESC (ENSMMMG00000005721) #15	FBXW8 (ENSMMMG00000005735) #16	ENSMMMG00000005782	RNFT2 (ENSMMMG00000005795) #19	ENSMMMG00000005819 #20	ENSMMMG00000005833	ENSMMMG00000005843 #21	TBX3 (ENSMMMG00000005859) #22	TBX5 (ENSMMMG00000005919) #23
Eurasian red squirrel	MODERN SPECIES	17	SUDS3 (ENSSVLG00005010109)	TAOK3 (ENSSVLG00005010141) #7	PEBP1 (ENSSVLG00005010178)	ENSSVLG00005010202	VSIG10 (ENSSVLG00005010212) #9	ENSSVLG00005010243 #10	RFC5 (ENSSVLG00005010328) #11	KSR2 (ENSSVLG00005010417) #12	NOS1 (ENSSVLG00005010751) #13	FBXO21 (ENSSVLG00005011305) #14	TESC (ENSSVLG00005011403) #15	FBXW8 (ENSSVLG00005011652) #16	RNFT2 (ENSSVLG00005011993) #19	SPRING1 (ENSSVLG00005012053) #20	MED13L (ENSSVLG00005012133) #21	TBX3 (ENSSVLG00005012227) #22	TBX5 (ENSSVLG00005012333) #23	RBM19 (ENSSVLG00005012615) #24	LHX5 (ENSSVLG00005012880) #25	SDSL (ENSSVLG00005012957) #26	SDS (ENSSVLG00005013056) #27	PLBD2 (ENSSVLG00005013215) #28	SLC8B1 (ENSSVLG00005013561) #29	TPCN1 (ENSSVLG00005013723) #30	ENSSVLG00005013847 #31	RITA1 (ENSSVLG00005013896) #32	DDX54 (ENSSVLG00005013954) #33	CFAP73 (ENSSVLG00005014031) #34	RASAL1 (ENSSVLG00005014197) #35	DTX1 (ENSSVLG00005014966) #36	OAS2 (ENSSVLG00005015095) #37
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251.l #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251.l #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23
Guinea pig	MODERN SPECIES	4	SUDS3 (ENSCPOG00000009189)	TAOK3 (ENSCPOG00000027606) #7	ENSCPOG00000038781 #8	VSIG10 (ENSCPOG00000007016) #9	WSB2 (ENSCPOG00000014155) #10	RFC5 (ENSCPOG00000022189) #11	KSR2 (ENSCPOG00000000817) #12	NOS1 (ENSCPOG00000009581) #13	ENSCPOG00000003610 #14	TESC (ENSCPOG00000012005) #15	FBXW8 (ENSCPOG00000005448) #16	ENSCPOG00000020843	RNFT2 (ENSCPOG00000014145) #19	SPRING1 (ENSCPOG00000032153) #20	MED13L (ENSCPOG00000012651) #21	TBX3 (ENSCPOG00000003952) #22	TBX5 (ENSCPOG00000014558) #23
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251.l #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23
Degu	DUPLICATION
Degu	MODERN SPECIES	120	WSB2 (ENSODEG00000004964) #10	RFC5 (ENSODEG00000006557) #11	KSR2 (ENSODEG00000005196) #12	ENSODEG00000007540	FBXO21 (ENSODEG00000005327) #14	TESC (ENSODEG00000005224) #15	ENSODEG00000019176	ENSODEG00000006431	FBXW8 (ENSODEG00000006534) #16	HRK (ENSODEG00000019361) #18	RNFT2 (ENSODEG00000005740) #19	SPRING1 (ENSODEG00000005513) #20	MED13L (ENSODEG00000005109) #21	ENSODEG00000005807	ENSODEG00000005715	ENSODEG00000019256 #22	ENSODEG00000005546 #22	TBX5 (ENSODEG00000004966) #23
Degu	MODERN SPECIES	120	RFC5 (ENSODEG00000006557) #11	KSR2 (ENSODEG00000005196) #12	ENSODEG00000007540	FBXO21 (ENSODEG00000005327) #14	TESC (ENSODEG00000005224) #15	ENSODEG00000019176	ENSODEG00000006431	FBXW8 (ENSODEG00000006534) #16	HRK (ENSODEG00000019361) #18	RNFT2 (ENSODEG00000005740) #19	SPRING1 (ENSODEG00000005513) #20	MED13L (ENSODEG00000005109) #21	ENSODEG00000005807	ENSODEG00000005715	ENSODEG00000019256 #22	ENSODEG00000005546 #22	TBX5 (ENSODEG00000004966) #23
Long-tailed chinchilla	MODERN SPECIES	162	SRRM4 (ENSCLAG00000009764)	SUDS3 (ENSCLAG00000012870)	TAOK3 (ENSCLAG00000014513) #7	ENSCLAG00000016201 #8	VSIG10 (ENSCLAG00000010336) #9	WSB2 (ENSCLAG00000011974) #10	RFC5 (ENSCLAG00000009944) #11	KSR2 (ENSCLAG00000011576) #12	NOS1 (ENSCLAG00000017357) #13	FBXO21 (ENSCLAG00000012659) #14	TESC (ENSCLAG00000010333) #15	FBXW8 (ENSCLAG00000010936) #16	RNFT2 (ENSCLAG00000010555) #19	SPRING1 (ENSCLAG00000010468) #20	MED13L (ENSCLAG00000012004) #21	TBX3 (ENSCLAG00000013301) #22	TBX5 (ENSCLAG00000011665) #23
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000017873	ENSHGLG00000032275	NOS1 (ENSHGLG00000014607) #13	FBXO21 (ENSHGLG00000017895) #14	TESC (ENSHGLG00000018228) #15	ENSHGLG00000009839	ENSHGLG00000009495 #16	HRK (ENSHGLG00000032396) #18	ENSHGLG00000011047 #19	SPRING1 (ENSHGLG00000018586) #20	ENSHGLG00000019986	ENSHGLG00000049195	MED13L (ENSHGLG00000015908) #21	ENSHGLG00000042829	ENSHGLG00000011364	ENSHGLG00000018712 #22	TBX5 (ENSHGLG00000016202) #23	RBM19 (ENSHGLG00000010899) #24	LHX5 (ENSHGLG00000006590) #25	SDSL (ENSHGLG00000007693) #26	SDS (ENSHGLG00000009006) #27	PLBD2 (ENSHGLG00000009980) #28	SLC8B1 (ENSHGLG00000013801) #29	TPCN1 (ENSHGLG00000012159) #30	IQCD (ENSHGLG00000015686) #31	RITA1 (ENSHGLG00000011650) #32	DDX54 (ENSHGLG00000014411) #33	CFAP73 (ENSHGLG00000010195) #34	RASAL1 (ENSHGLG00000013250) #35	DTX1 (ENSHGLG00000035722) #36	OAS2 (ENSHGLG00000016098) #37
Rodentia_B	ANCESTRAL SPECIES	22	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Myomorpha	ANCESTRAL SPECIES	30	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Muroidea	ANCESTRAL SPECIES	28	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Chinese hamster chok1gshd	MODERN SPECIES	130	Suds3 (ENSCGRG00001018235)	Taok3 (ENSCGRG00001023031) #7	ENSCGRG00001019504 #8	Vsig10 (ENSCGRG00001018184) #9	Wsb2 (ENSCGRG00001003338) #10	Rfc5 (ENSCGRG00001000176) #11	Ksr2 (ENSCGRG00001000530) #12	Nos1 (ENSCGRG00001005808) #13	Fbxo21 (ENSCGRG00001014358) #14	Tesc (ENSCGRG00001012767) #15	Fbxw8 (ENSCGRG00001024978) #16	Hrk (ENSCGRG00001011723) #18	Rnft2 (ENSCGRG00001006644) #19	Spring1 (ENSCGRG00001002352) #20	Med13l (ENSCGRG00001023619) #21	Tbx3 (ENSCGRG00001018279) #22	Tbx5 (ENSCGRG00001014603) #23	Rbm19 (ENSCGRG00001000323) #24	Lhx5 (ENSCGRG00001014215) #25	Sdsl (ENSCGRG00001000164) #26	Sds (ENSCGRG00001021709) #27	Plbd2 (ENSCGRG00001020051) #28	ENSCGRG00001008704	Slc8b1 (ENSCGRG00001013787) #29	Tpcn1 (ENSCGRG00001018401) #30	Iqcd (ENSCGRG00001016537) #31	Rita1 (ENSCGRG00001021987) #32	Ddx54 (ENSCGRG00001014803) #33	Cfap73 (ENSCGRG00001022018) #34	Rasal1 (ENSCGRG00001001819) #35	Dtx1 (ENSCGRG00001018544) #36
Golden Hamster	MODERN SPECIES	704	Srrm4 (ENSMAUG00000013203)	Suds3 (ENSMAUG00000017338)	Taok3 (ENSMAUG00000018083) #7	ENSMAUG00000012785	Vsig10 (ENSMAUG00000000299) #9	Wsb2 (ENSMAUG00000006596) #10	Ksr2 (ENSMAUG00000015972) #12	ENSMAUG00000016929	Fbxo21 (ENSMAUG00000018464) #14	Tesc (ENSMAUG00000020503) #15	Fbxw8 (ENSMAUG00000002768) #16	Hrk (ENSMAUG00000005733) #18	Rnft2 (ENSMAUG00000000588) #19	Spring1 (ENSMAUG00000017699) #20	Med13l (ENSMAUG00000001308) #21	ENSMAUG00000017673 #22	Tbx5 (ENSMAUG00000003178) #23	Rbm19 (ENSMAUG00000019290) #24	Lhx5 (ENSMAUG00000000241) #25	Sdsl (ENSMAUG00000000523) #26	Plbd2 (ENSMAUG00000001393) #28	Slc8b1 (ENSMAUG00000000908) #29	Tpcn1 (ENSMAUG00000014956) #30	Rita1 (ENSMAUG00000014551) #32	Iqcd (ENSMAUG00000007727) #31	Ddx54 (ENSMAUG00000011051) #33	Cfap73 (ENSMAUG00000011569) #34	ENSMAUG00000012354 #35	Dtx1 (ENSMAUG00000011103) #36	Oas2 (ENSMAUG00000009993) #37	ENSMAUG00000014013 ##37
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00730000111247	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Northern American deer mouse	MODERN SPECIES	15	Suds3 (ENSPEMG00000008610)	Taok3 (ENSPEMG00000011978) #7	Pebp1 (ENSPEMG00000005130) #8	ENSPEMG00000026518	Wsb2 (ENSPEMG00000018736) #10	Rfc5 (ENSPEMG00000008196) #11	Ksr2 (ENSPEMG00000010439) #12	Nos1 (ENSPEMG00000011114) #13	Fbxo21 (ENSPEMG00000017871) #14	Tesc (ENSPEMG00000018927) #15	Fbxw8 (ENSPEMG00000017735) #16	ENSPEMG00000024650	Rnft2 (ENSPEMG00000007901) #19	Spring1 (ENSPEMG00000025379) #20	Med13l (ENSPEMG00000009671) #21	Tbx3 (ENSPEMG00000007253) #22	Tbx5 (ENSPEMG00000018951) #23	Rbm19 (ENSPEMG00000018058) #24	Lhx5 (ENSPEMG00000016892) #25	Sdsl (ENSPEMG00000007497) #26	Sds (ENSPEMG00000006682) #27	Plbd2 (ENSPEMG00000016740) #28	Slc8b1 (ENSPEMG00000018347) #29	Tpcn1 (ENSPEMG00000018993) #30	Iqcd (ENSPEMG00000007862) #31	Rita1 (ENSPEMG00000006879) #32	Ddx54 (ENSPEMG00000016701) #33	Cfap73 (ENSPEMG00000018586) #34	Rasal1 (ENSPEMG00000007719) #35	Dtx1 (ENSPEMG00000016244) #36	Oas2 (ENSPEMG00000031163) #37
Prairie vole	MODERN SPECIES	7	Suds3 (ENSMOCG00000001519)	Taok3 (ENSMOCG00000015684) #7	ENSMOCG00000001486 #8	Vsig10 (ENSMOCG00000014068) #9	Wsb2 (ENSMOCG00000021973) #10	Rfc5 (ENSMOCG00000013450) #11	Ksr2 (ENSMOCG00000016878) #12	Nos1 (ENSMOCG00000000970) #13	Fbxo21 (ENSMOCG00000011172) #14	Tesc (ENSMOCG00000013995) #15	Fbxw8 (ENSMOCG00000020447) #16	Rnft2 (ENSMOCG00000022819) #19	Spring1 (ENSMOCG00000013278) #20	ENSMOCG00000007524	Med13l (ENSMOCG00000019989) #21	Tbx3 (ENSMOCG00000008343) #22	Tbx5 (ENSMOCG00000002931) #23	Tmem132c (ENSMOCG00000008690)	ENSMOCG00000013681	ENSMOCG00000021870	Tmem132b (ENSMOCG00000021824)	Aacs (ENSMOCG00000013751)	Bri3bp (ENSMOCG00000014929)	Dhx37 (ENSMOCG00000003143)	Scarb1 (ENSMOCG00000020522)	Ncor2 (ENSMOCG00000020712)	Rflna (ENSMOCG00000015532)	Zfp664 (ENSMOCG00000001606)	Ccdc92 (ENSMOCG00000009569)	Dnah10 (ENSMOCG00000012111)	Atp6v0a2 (ENSMOCG00000021235)
Murinae	ANCESTRAL SPECIES	20	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Mus	ANCESTRAL SPECIES	17	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Mus_A	ANCESTRAL SPECIES	6	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Mus_B	ANCESTRAL SPECIES	4	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Mouse	MODERN SPECIES	14	Suds3 (ENSMUSG00000066900)	Taok3 (ENSMUSG00000061288) #7	Pebp1 (ENSMUSG00000032959) #8	Vsig10 (ENSMUSG00000066894) #9	Wsb2 (ENSMUSG00000029364) #10	Rfc5 (ENSMUSG00000029363) #11	Ksr2 (ENSMUSG00000061578) #12	Nos1 (ENSMUSG00000029361) #13	Fbxo21 (ENSMUSG00000032898) #14	Tesc (ENSMUSG00000029359) #15	Fbxw8 (ENSMUSG00000032867) #16	Hrk (ENSMUSG00000046607) #18	Rnft2 (ENSMUSG00000032850) #19	Spring1 (ENSMUSG00000032840) #20	Med13l (ENSMUSG00000018076) #21	Tbx3 (ENSMUSG00000018604) #22	Tbx5 (ENSMUSG00000018263) #23	Rbm19 (ENSMUSG00000029594) #24	Lhx5 (ENSMUSG00000029595) #25	Sdsl (ENSMUSG00000029596) #26	Sds (ENSMUSG00000029597) #27	Plbd2 (ENSMUSG00000029598) #28	Slc8b1 (ENSMUSG00000032754) #29	Tpcn1 (ENSMUSG00000032741) #30	Iqcd (ENSMUSG00000029601) #31	Rita1 (ENSMUSG00000029600) #32	Ddx54 (ENSMUSG00000029599) #33	Cfap73 (ENSMUSG00000094282) #34	Rasal1 (ENSMUSG00000029602) #35	Dtx1 (ENSMUSG00000029603) #36	Oas2 (ENSMUSG00000032690) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Steppe mouse	MODERN SPECIES	2793																Tbx3 (ENSMSIG00000002404) #22
spretus	MODERN SPECIES	14	Suds3 (MGP_SPRETEiJ_G0028638)	Taok3 (MGP_SPRETEiJ_G0028639) #7	Pebp1 (MGP_SPRETEiJ_G0028640) #8	Vsig10 (MGP_SPRETEiJ_G0028641) #9	Wsb2 (MGP_SPRETEiJ_G0028642) #10	Rfc5 (MGP_SPRETEiJ_G0028643) #11	Ksr2 (MGP_SPRETEiJ_G0028644) #12	Nos1 (MGP_SPRETEiJ_G0028645) #13	Fbxo21 (MGP_SPRETEiJ_G0028646) #14	Tesc (MGP_SPRETEiJ_G0028647) #15	Fbxw8 (MGP_SPRETEiJ_G0028648) #16	Hrk (MGP_SPRETEiJ_G0028649) #18	Rnft2 (MGP_SPRETEiJ_G0028650) #19	Spring1 (MGP_SPRETEiJ_G0028651) #20	Med13l (MGP_SPRETEiJ_G0028652) #21	Tbx3 (MGP_SPRETEiJ_G0028653) #22	Tbx5 (MGP_SPRETEiJ_G0028654) #23	MGP_SPRETEiJ_G0028655	Rbm19 (MGP_SPRETEiJ_G0028656) #24	Lhx5 (MGP_SPRETEiJ_G0028657) #25	Sdsl (MGP_SPRETEiJ_G0028658) #26	Sds (MGP_SPRETEiJ_G0028659) #27	Plbd2 (MGP_SPRETEiJ_G0028660) #28	Slc8b1 (MGP_SPRETEiJ_G0028661) #29	Tpcn1 (MGP_SPRETEiJ_G0028662) #30	Iqcd (MGP_SPRETEiJ_G0028663) #31	Rita1 (MGP_SPRETEiJ_G0028664) #32	Ddx54 (MGP_SPRETEiJ_G0028665) #33	Cfap73 (MGP_SPRETEiJ_G0028666) #34	Rasal1 (MGP_SPRETEiJ_G0028667) #35	Dtx1 (MGP_SPRETEiJ_G0028668) #36
Ryukyu mouse	MODERN SPECIES	14	Suds3 (MGP_CAROLIEiJ_G0027639)	Taok3 (MGP_CAROLIEiJ_G0027640) #7	Pebp1 (MGP_CAROLIEiJ_G0027641) #8	Vsig10 (MGP_CAROLIEiJ_G0027642) #9	Wsb2 (MGP_CAROLIEiJ_G0027643) #10	Rfc5 (MGP_CAROLIEiJ_G0027644) #11	Ksr2 (MGP_CAROLIEiJ_G0027645) #12	Nos1 (MGP_CAROLIEiJ_G0027646) #13	Fbxo21 (MGP_CAROLIEiJ_G0027647) #14	Tesc (MGP_CAROLIEiJ_G0027648) #15	Fbxw8 (MGP_CAROLIEiJ_G0027649) #16	Hrk (MGP_CAROLIEiJ_G0027650) #18	Rnft2 (MGP_CAROLIEiJ_G0027651) #19	Spring1 (MGP_CAROLIEiJ_G0027652) #20	Med13l (MGP_CAROLIEiJ_G0027653) #21	Tbx3 (MGP_CAROLIEiJ_G0027654) #22	Tbx5 (MGP_CAROLIEiJ_G0027655) #23	Rbm19 (MGP_CAROLIEiJ_G0027656) #24	Lhx5 (MGP_CAROLIEiJ_G0027657) #25	Sdsl (MGP_CAROLIEiJ_G0027658) #26	Sds (MGP_CAROLIEiJ_G0027659) #27	Plbd2 (MGP_CAROLIEiJ_G0027660) #28	Slc8b1 (MGP_CAROLIEiJ_G0027661) #29	Tpcn1 (MGP_CAROLIEiJ_G0027662) #30	Iqcd (MGP_CAROLIEiJ_G0027663) #31	Rita1 (MGP_CAROLIEiJ_G0027664) #32	Ddx54 (MGP_CAROLIEiJ_G0027665) #33	Cfap73 (MGP_CAROLIEiJ_G0027666) #34	Rasal1 (MGP_CAROLIEiJ_G0027667) #35	Dtx1 (MGP_CAROLIEiJ_G0027668) #36	Oas2 (MGP_CAROLIEiJ_G0027669) #37
Shrew mouse	MODERN SPECIES	15	Taok3 (MGP_PahariEiJ_G0024221) #7	Pebp1 (MGP_PahariEiJ_G0024222) #8	MGP_PahariEiJ_G0024223 #9	Wsb2 (MGP_PahariEiJ_G0024224) #10	Rfc5 (MGP_PahariEiJ_G0024225) #11	Ksr2 (MGP_PahariEiJ_G0024226) #12	Nos1 (MGP_PahariEiJ_G0024227) #13	Fbxo21 (MGP_PahariEiJ_G0024228) #14	Tesc (MGP_PahariEiJ_G0024229) #15	Fbxw8 (MGP_PahariEiJ_G0024230) #16	Hrk (MGP_PahariEiJ_G0024231) #18	Rnft2 (MGP_PahariEiJ_G0024232) #19	Spring1 (MGP_PahariEiJ_G0024233) #20	Med13l (MGP_PahariEiJ_G0024234) #21	Hmgb3 (MGP_PahariEiJ_G0024235)	Tbx3 (MGP_PahariEiJ_G0024236) #22	Tbx5 (MGP_PahariEiJ_G0024237) #23	Rbm19 (MGP_PahariEiJ_G0024238) #24	Lhx5 (MGP_PahariEiJ_G0024239) #25	MGP_PahariEiJ_G0024240 #26	MGP_PahariEiJ_G0024241 #27	Plbd2 (MGP_PahariEiJ_G0024242) #28	Slc8b1 (MGP_PahariEiJ_G0024243) #29	Tpcn1 (MGP_PahariEiJ_G0024244) #30	Iqcd (MGP_PahariEiJ_G0024245) #31	Rita1 (MGP_PahariEiJ_G0024246) #32	Ddx54 (MGP_PahariEiJ_G0024247) #33	Cfap73 (MGP_PahariEiJ_G0024248) #34	Rasal1 (MGP_PahariEiJ_G0024249) #35	Dtx1 (MGP_PahariEiJ_G0024250) #36	MGP_PahariEiJ_G0024251 #37
Rat	MODERN SPECIES	3	Suds3 (ENSRNOG00000001139)	Taok3 (ENSRNOG00000001138) #7	Pebp1 (ENSRNOG00000001136) #8	Vsig10 (ENSRNOG00000022698) #9	Wsb2 (ENSRNOG00000001135) #10	Rfc5 (ENSRNOG00000001134) #11	AABR07036498.1 (ENSRNOG00000030813)	Ksr2 (ENSRNOG00000028630) #12	Nos1 (ENSRNOG00000001130) #13	Fbxo21 (ENSRNOG00000001129) #14	Tesc (ENSRNOG00000001128) #15	Fbxw8 (ENSRNOG00000001126) #16	Rnft2 (ENSRNOG00000001124) #19	Spring1 (ENSRNOG00000001123) #20	Med13l (ENSRNOG00000001120) #21	Tbx3 (ENSRNOG00000008706) #22	Tbx5 (ENSRNOG00000001399) #23	ENSRNOG00000070135	Rbm19 (ENSRNOG00000001397) #24	Lhx5 (ENSRNOG00000001392) #25	Sdsl (ENSRNOG00000001391) #26	Sds (ENSRNOG00000001388) #27	Plbd2 (ENSRNOG00000001385) #28	Slc8b1 (ENSRNOG00000001383) #29	Tpcn1 (ENSRNOG00000059344) #30	Rita1 (ENSRNOG00000037720) #32	Ddx54 (ENSRNOG00000001377) #33	Cfap73 (ENSRNOG00000056407) #34	Rasal1 (ENSRNOG00000001374) #35	Dtx1 (ENSRNOG00000050848) #36	Oas2 (ENSRNOG00000049282) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1386				Vsig10 (ENSNGAG00000005218) #9	Wsb2 (ENSNGAG00000004326) #10	Rfc5 (ENSNGAG00000000302) #11	Ksr2 (ENSNGAG00000000182) #12	Nos1 (ENSNGAG00000003367) #13	Fbxo21 (ENSNGAG00000017659) #14	Tesc (ENSNGAG00000011449) #15	Fbxw8 (ENSNGAG00000019558) #16	Rnft2 (ENSNGAG00000002814) #19	Spring1 (ENSNGAG00000004139) #20	Med13l (ENSNGAG00000014188) #21	ENSNGAG00000014908	Tbx3 (ENSNGAG00000017444) #22	Tbx5 (ENSNGAG00000000809) #23	Rbm19 (ENSNGAG00000009076) #24	Lhx5 (ENSNGAG00000015426) #25	Sdsl (ENSNGAG00000011921) #26	Sds (ENSNGAG00000011312) #27	Plbd2 (ENSNGAG00000020254) #28	Slc8b1 (ENSNGAG00000020511) #29	Tpcn1 (ENSNGAG00000017962) #30	Iqcd (ENSNGAG00000016178) #31	Rita1 (ENSNGAG00000019490) #32	Ddx54 (ENSNGAG00000021313) #33	Cfap73 (ENSNGAG00000021091) #34	Rasal1 (ENSNGAG00000021435) #35	Dtx1 (ENSNGAG00000015637) #36	Oas2 (ENSNGAG00000000513) #37
Lesser Egyptian jerboa	MODERN SPECIES	109	Srrm4 (ENSJJAG00000016448)	ENSJJAG00000000401	ENSJJAG00000021003 #7	ENSJJAG00000024022 #7	Pebp1 (ENSJJAG00000018822) #8	Wsb2 (ENSJJAG00000021913) #10	Rfc5 (ENSJJAG00000018010) #11	Ksr2 (ENSJJAG00000009784) #12	ENSJJAG00000021583	Fbxo21 (ENSJJAG00000012755) #14	Tesc (ENSJJAG00000009941) #15	Fbxw8 (ENSJJAG00000015787) #16	Rnft2 (ENSJJAG00000008639) #19	ENSJJAG00000003166 #20	Med13l (ENSJJAG00000019734) #21	ENSJJAG00000010887 #22	Tbx5 (ENSJJAG00000017899) #23
Kangaroo rat	MODERN SPECIES	342	Hspb8 (ENSDORG00000013686)	Srrm4 (ENSDORG00000015243)	Suds3 (ENSDORG00000003983)	Taok3 (ENSDORG00000001342) #7	Pbp2 (ENSDORG00000027183)	Wsb2 (ENSDORG00000011782) #10	Rfc5 (ENSDORG00000011777) #11	Ksr2 (ENSDORG00000001105) #12	Nos1 (ENSDORG00000009177) #13	Fbxo21 (ENSDORG00000009176) #14	Tesc (ENSDORG00000011444) #15	Fbxw8 (ENSDORG00000011437) #16	Rnft2 (ENSDORG00000010318) #19	Spring1 (ENSDORG00000029451) #20	Med13l (ENSDORG00000003685) #21	ENSDORG00000030043 #22	Tbx5 (ENSDORG00000009322) #23	Rbm19 (ENSDORG00000008549) #24	Lhx5 (ENSDORG00000002125) #25	Sdsl (ENSDORG00000028231) #26	Sds (ENSDORG00000007412) #27	Plbd2 (ENSDORG00000007411) #28	ENSDORG00000007409	Tpcn1 (ENSDORG00000007405) #30	Iqcd (ENSDORG00000029332) #31	ENSDORG00000024957	Ddx54 (ENSDORG00000003399) #33	ENSDORG00000003398	ENSDORG00000014091 #35	Grem1 (ENSDORG00000027382)	Fmn1 (ENSDORG00000010291)
Lagomorpha	ANCESTRAL SPECIES	65															ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT01040000240683	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	13	SRSF9 (ENSOCUG00000024603)	ENSOCUG00000039563	ENSOCUG00000017806	COQ5 (ENSOCUG00000014871)	ENSOCUG00000035991	RNF10 (ENSOCUG00000014880)	POP5 (ENSOCUG00000006537)	ENSOCUG00000008358	MLEC (ENSOCUG00000008367)	ACADS (ENSOCUG00000008379)	ENSOCUG00000034268	ENSOCUG00000031717	SPPL3 (ENSOCUG00000007496)	MED13L (ENSOCUG00000017525) #21	ENSOCUG00000014595 #22	ENSOCUG00000033172 #22	TBX5 (ENSOCUG00000012715) #23	RBM19 (ENSOCUG00000009398) #24	LHX5 (ENSOCUG00000009321) #25	SDSL (ENSOCUG00000012353) #26	SDS (ENSOCUG00000022168) #27	PLBD2 (ENSOCUG00000007851) #28	SLC8B1 (ENSOCUG00000003827) #29	TPCN1 (ENSOCUG00000023629) #30	IQCD (ENSOCUG00000016029) #31	RITA1 (ENSOCUG00000022772) #32	RASAL1 (ENSOCUG00000016015) #35	OAS2 (ENSOCUG00000015823) #37	OAS3 (ENSOCUG00000027849) ##37	OAS1 (ENSOCUG00000034782) ##37	RPH3A (ENSOCUG00000020936)
Rabbit	MODERN SPECIES	13	ENSOCUG00000009867	SRSF9 (ENSOCUG00000024603)	ENSOCUG00000039563	ENSOCUG00000017806	COQ5 (ENSOCUG00000014871)	ENSOCUG00000035991	RNF10 (ENSOCUG00000014880)	POP5 (ENSOCUG00000006537)	ENSOCUG00000008358	MLEC (ENSOCUG00000008367)	ACADS (ENSOCUG00000008379)	ENSOCUG00000034268	ENSOCUG00000031717	SPPL3 (ENSOCUG00000007496)	MED13L (ENSOCUG00000017525) #21	ENSOCUG00000014595 #22	ENSOCUG00000033172 #22	TBX5 (ENSOCUG00000012715) #23	RBM19 (ENSOCUG00000009398) #24	LHX5 (ENSOCUG00000009321) #25	SDSL (ENSOCUG00000012353) #26	SDS (ENSOCUG00000022168) #27	PLBD2 (ENSOCUG00000007851) #28	SLC8B1 (ENSOCUG00000003827) #29	TPCN1 (ENSOCUG00000023629) #30	IQCD (ENSOCUG00000016029) #31	RITA1 (ENSOCUG00000022772) #32	RASAL1 (ENSOCUG00000016015) #35	OAS2 (ENSOCUG00000015823) #37	OAS3 (ENSOCUG00000027849) ##37	OAS1 (ENSOCUG00000034782) ##37
Pika	MODERN SPECIES	4869																ENSOPRG00000004462 #22
Atlantogenata	ANCESTRAL SPECIES	28	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000163122	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000158066 #22
Armadillo	MODERN SPECIES	1858										HRK (ENSDNOG00000042252) #18	RNFT2 (ENSDNOG00000041818) #19	SPRING1 (ENSDNOG00000031305) #20	ENSDNOG00000047330	MED13L (ENSDNOG00000019383) #21	ENSDNOG00000036626	TBX3 (ENSDNOG00000044358) #22
Afrotheria	ANCESTRAL SPECIES	61	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Tenrec	MODERN SPECIES	3070																ENSETEG00000008128 #22
Afrotheria_a	ANCESTRAL SPECIES	58	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Hyrax	MODERN SPECIES	2510																TBX3 (ENSPCAG00000009570) #22
Elephant	MODERN SPECIES	527	SUDS3 (ENSLAFG00000001274)	TAOK3 (ENSLAFG00000015482) #7	ENSLAFG00000015477 #8	VSIG10 (ENSLAFG00000011273) #9	WSB2 (ENSLAFG00000011263) #10	RFC5 (ENSLAFG00000011258) #11	KSR2 (ENSLAFG00000010691) #12	NOS1 (ENSLAFG00000010157) #13	FBXO21 (ENSLAFG00000010154) #14	TESC (ENSLAFG00000018271) #15	ENSLAFG00000013605 #16	HRK (ENSLAFG00000027617) #18	RNFT2 (ENSLAFG00000013391) #19	SPRING1 (ENSLAFG00000005131) #20	MED13L (ENSLAFG00000012322) #21	TBX3 (ENSLAFG00000002948) #22	TBX5 (ENSLAFG00000010125) #23	RBM19 (ENSLAFG00000004187) #24	LHX5 (ENSLAFG00000015121) #25	SDSL (ENSLAFG00000031864) #26	SDS (ENSLAFG00000004429) #27	PLBD2 (ENSLAFG00000016249) #28	SLC8B1 (ENSLAFG00000032670) #29	TPCN1 (ENSLAFG00000009454) #30	IQCD (ENSLAFG00000009451) #31	RITA1 (ENSLAFG00000009448) #32	DDX54 (ENSLAFG00000027782) #33	CFAP73 (ENSLAFG00000009442) #34	RASAL1 (ENSLAFG00000014078) #35	DTX1 (ENSLAFG00000014074) #36	OAS2 (ENSLAFG00000014069) #37
Marsupialia	ANCESTRAL SPECIES	16	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Marsupialia_b	ANCESTRAL SPECIES	17	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Tasmanian devil	MODERN SPECIES		ENSSHAG00000030593	SUDS3 (ENSSHAG00000022381)	TAOK3 (ENSSHAG00000014419) #7	ENSSHAG00000030061 #8	VSIG10 (ENSSHAG00000014120) #9	WSB2 (ENSSHAG00000013963) #10	RFC5 (ENSSHAG00000013889) #11	KSR2 (ENSSHAG00000028330) #12	NOS1 (ENSSHAG00000008403) #13	FBXO21 (ENSSHAG00000007583) #14	ENSSHAG00000021498 #15	FBXW8 (ENSSHAG00000023969) #16	RNFT2 (ENSSHAG00000026282) #19	SPRING1 (ENSSHAG00000028657) #20	MED13L (ENSSHAG00000011306) #21	ENSSHAG00000023107 #22	ENSSHAG00000029879 #23	ENSSHAG00000010782	ENSSHAG00000011574	ENSSHAG00000012256 #24	LHX5 (ENSSHAG00000014761) #25	SDSL (ENSSHAG00000014890) #26	SDS (ENSSHAG00000015020) #27	PLBD2 (ENSSHAG00000030023) #28	SLC8B1 (ENSSHAG00000015349) #29	TPCN1 (ENSSHAG00000015451) #30	RITA1 (ENSSHAG00000021558) #32	DDX54 (ENSSHAG00000015646) #33	ENSSHAG00000015698 #34	RASAL1 (ENSSHAG00000015786) #35	DTX1 (ENSSHAG00000015903) #36
Diprotodontia	ANCESTRAL SPECIES	22	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
Wallaby	MODERN SPECIES	4087																TBX3 (ENSMEUG00000013490) #22
Diprotodontia_a	ANCESTRAL SPECIES	22	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00510000046406.f.b.a.a.d #37
koala	MODERN SPECIES	126	TAOK3 (ENSPCIG00000000190) #7	ENSPCIG00000000221 #8	VSIG10 (ENSPCIG00000000287) #9	WSB2 (ENSPCIG00000000323) #10	RFC5 (ENSPCIG00000000342) #11	KSR2 (ENSPCIG00000012309) #12	NOS1 (ENSPCIG00000004626) #13	FBXO21 (ENSPCIG00000011762) #14	TESC (ENSPCIG00000011761) #15	FBXW8 (ENSPCIG00000011759) #16	HRK (ENSPCIG00000009324) #18	RNFT2 (ENSPCIG00000009245) #19	SPRING1 (ENSPCIG00000009246) #20	MED13L (ENSPCIG00000030006) #21	ENSPCIG00000010562	TBX3 (ENSPCIG00000010556) #22	TBX5 (ENSPCIG00000035786) #23
Common wonbat	MODERN SPECIES	52	VSIG10 (ENSVURG00010006052) #9	WSB2 (ENSVURG00010006024) #10	RFC5 (ENSVURG00010006004) #11	ENSVURG00010005989	ENSVURG00010005984	KSR2 (ENSVURG00010005627) #12	NOS1 (ENSVURG00010005542) #13	FBXO21 (ENSVURG00010005525) #14	ENSVURG00010005511	TESC (ENSVURG00010005485) #15	FBXW8 (ENSVURG00010005132) #16	HRK (ENSVURG00010005111) #18	RNFT2 (ENSVURG00010005083) #19	SPRING1 (ENSVURG00010005068) #20	MED13L (ENSVURG00010004979) #21	TBX3 (ENSVURG00010004928) #22	ENSVURG00010004916	TBX5 (ENSVURG00010004906) #23	ENSVURG00010004879	ENSVURG00010004851 #24	LHX5 (ENSVURG00010004820) #25	SDSL (ENSVURG00010004791) #26	SDS (ENSVURG00010004779) #27	PLBD2 (ENSVURG00010004764) #28	SLC8B1 (ENSVURG00010004734) #29	TPCN1 (ENSVURG00010004683) #30	IQCD (ENSVURG00010004666) #31	RITA1 (ENSVURG00010004656) #32	DDX54 (ENSVURG00010004607) #33	ENSVURG00010004581 #34	RASAL1 (ENSVURG00010004535) #35
Opossum	MODERN SPECIES	2	UNC119B (ENSMODG00000003021)	ENSMODG00000003051	POP5 (ENSMODG00000003066)	RNF10 (ENSMODG00000003111)	COQ5 (ENSMODG00000003124)	ENSMODG00000045676	ENSMODG00000003133	SRSF9 (ENSMODG00000003146)	ENSMODG00000044919	TRIAP1 (ENSMODG00000003157)	COX6A1 (ENSMODG00000003168)	MSI1 (ENSMODG00000003189)	PLA2G1B (ENSMODG00000003205)	MED13L (ENSMODG00000012109) #21	ENSMODG00000041838	TBX3 (ENSMODG00000012059) #22	TBX5 (ENSMODG00000012045) #23	ENSMODG00000012024	ENSMODG00000012002	ENSMODG00000038680	ENSMODG00000012015	ENSMODG00000011981	ENSMODG00000042761	ENSMODG00000036995	ENSMODG00000011998	ENSMODG00000011986	ENSMODG00000048854	ENSMODG00000048371	ENSMODG00000037521	ENSMODG00000044469	ENSMODG00000040037
Platypus	MODERN SPECIES	11	HSPB8 (ENSOANG00000044731)	TAOK3 (ENSOANG00000043939) #7	ENSOANG00000045461	ENSOANG00000031377 #9	WSB2 (ENSOANG00000042725) #10	RFC5 (ENSOANG00000019819) #11	KSR2 (ENSOANG00000037345) #12	NOS1 (ENSOANG00000021943) #13	FBXO21 (ENSOANG00000012062) #14	TESC (ENSOANG00000044898) #15	ENSOANG00000050663 #16	ENSOANG00000044314	RNFT2 (ENSOANG00000038527) #19	ENSOANG00000039977 #20	MED13L (ENSOANG00000007288) #21	TBX3 (ENSOANG00000007095) #22	TBX5 (ENSOANG00000047518) #23	RBM19 (ENSOANG00000049137) #24	LHX5 (ENSOANG00000042742) #25	SDSL (ENSOANG00000037171) #26	SDS (ENSOANG00000044882) #27	PLBD2 (ENSOANG00000039394) #28	SLC8B1 (ENSOANG00000007379) #29	TPCN1 (ENSOANG00000036598) #30	ENSOANG00000038000 #31	DDX54 (ENSOANG00000046705) #33	RASAL1 (ENSOANG00000004409) #35	DTX1 (ENSOANG00000045201) #36	RAB26 (ENSOANG00000045984)	TRAF7 (ENSOANG00000036750)	CASKIN1 (ENSOANG00000038157)
Sauria	ANCESTRAL SPECIES	11	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000161716
Archelosauria	ANCESTRAL SPECIES	14	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000161542
Archosauria	ANCESTRAL SPECIES	37						ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000161542
Aves	ANCESTRAL SPECIES	19						ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
African ostrich	MODERN SPECIES	610									KSR2 (ENSSCUG00000009619) #12	NOS1 (ENSSCUG00000009616) #13	FBXO21 (ENSSCUG00000009610) #14	FBXW8 (ENSSCUG00000009609) #16	RNFT2 (ENSSCUG00000009606) #19	SPRING1 (ENSSCUG00000009605) #20	MED13L (ENSSCUG00000009602) #21	TBX3 (ENSSCUG00000009599) #22	TBX5 (ENSSCUG00000009596) #23	RBM19 (ENSSCUG00000009591) #24	ENSSCUG00000009589 #25
Neognathae	ANCESTRAL SPECIES	15	ENSGT00940000154191	ENSGT00940000161716	ENSGT00940000161542	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Galloanserae	DUPLICATION
Galloanserae	ANCESTRAL SPECIES	13	ENSGT00940000154849.b	ENSGT00940000154191	ENSGT00940000161542	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066.g #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT01040000240683	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Phasianidae	ANCESTRAL SPECIES	13	ENSGT00940000154849.b	ENSGT00940000154191	ENSGT00940000161542	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066.g #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30
Japanese quail	MODERN SPECIES	6	AP1B1 (ENSCJPG00005015643)	GAS2L1 (ENSCJPG00005015645)	EWSR1 (ENSCJPG00005015649)	EMID1 (ENSCJPG00005015653)	DTX1 (ENSCJPG00005015655) #36	RASAL1 (ENSCJPG00005015656) #35	WSB2 (ENSCJPG00005015657) #10	KSR2 (ENSCJPG00005015661) #12	NOS1 (ENSCJPG00005015666) #13	FBXO21 (ENSCJPG00005015667) #14	TESC (ENSCJPG00005015668) #15	FBXW8 (ENSCJPG00005015669) #16	RNFT2 (ENSCJPG00005015670) #19	SPRING1 (ENSCJPG00005015671) #20	MED13L (ENSCJPG00005015673) #21	TBX3 (ENSCJPG00005015680) #22	TBX5 (ENSCJPG00005015681) #23	RBM19 (ENSCJPG00005015683) #24	LHX5 (ENSCJPG00005015684) #25	SDSL (ENSCJPG00005015685) #26	PLBD2 (ENSCJPG00005015686) #28	SLC8B1 (ENSCJPG00005015687) #29	TPCN1 (ENSCJPG00005015688) #30	ENSCJPG00005015689	ENSCJPG00005015690	ENSCJPG00005015691	ENSCJPG00005015692
Phasianidae_b	ANCESTRAL SPECIES	13	ENSGT00940000154849.b	ENSGT00940000154191	ENSGT00940000161542	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066.g #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30
Chicken	MODERN SPECIES	6	EWSR1 (ENSGALG00010000341)	EMID1 (ENSGALG00010000366)	DTX1 (ENSGALG00010000387) #36	RASAL1 (ENSGALG00010000404) #35	WSB2 (ENSGALG00010000407) #10	RFC5 (ENSGALG00010000412) #11	KSR2 (ENSGALG00010000196) #12	NOS1 (ENSGALG00010000576) #13	FBXO21 (ENSGALG00010000466) #14	TESC (ENSGALG00010000468) #15	FBXW8 (ENSGALG00010000470) #16	RNFT2 (ENSGALG00010000475) #19	C12orf49 (ENSGALG00010000479) #20	ENSGALG00010000481	MED13L (ENSGALG00010000485) #21	TBX3 (ENSGALG00010000443) #22	TBX5 (ENSGALG00010000151) #23	RBM19 (ENSGALG00010000444) #24	LHX5 (ENSGALG00010000445) #25	SDSL (ENSGALG00010000447) #26	PLBD2 (ENSGALG00010000449) #28	SLC8B1 (ENSGALG00010000452) #29	CATSPER4 (ENSGALG00010000457) #30	ENSGALG00010000462
Turkey	MODERN SPECIES	8	ENSMGAG00000016054	ENSMGAG00000010667	ENSMGAG00000010659	ATF1 (ENSMGAG00000010646)	DIP2B (ENSMGAG00000010609)	LARP4 (ENSMGAG00000010598)	LIMA1 (ENSMGAG00000010583)	CERS5 (ENSMGAG00000022719)	GPD1 (ENSMGAG00000017534)	SMARCD1 (ENSMGAG00000010566)	ASIC1 (ENSMGAG00000010535)	ENSMGAG00000010511	ENSMGAG00000010494	ENSMGAG00000010087 #24	ENSMGAG00000010075 #23	ENSMGAG00000022682 #22	ENSMGAG00000010084 #22	ENSMGAG00000010026 #21	ENSMGAG00000010021 #20	ENSMGAG00000010007 #19	ENSMGAG00000009977 #15	ENSMGAG00000009993 #16	FBXO21 (ENSMGAG00000009965) #14	ENSMGAG00000009947 #13	ENSMGAG00000022725	ENSMGAG00000010154 #30	ENSMGAG00000020665 #26	ENSMGAG00000021599 #25
Anatidae	ANCESTRAL SPECIES	39	ENSGT00940000155991	ENSGT00940000154849.b	ENSGT00940000154191.a	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066.g #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000160713.c #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00550000075100 #33	ENSGT01040000240683	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247	ENSGT00940000160605	ENSGT00940000162372
Pink-footed goose	MODERN SPECIES	83	ENSABRG00000019084	EWSR1 (ENSABRG00000019067)	ENSABRG00000019056	DTX1 (ENSABRG00000019024) #36	RASAL1 (ENSABRG00000019009) #35	WSB2 (ENSABRG00000019003) #10	RFC5 (ENSABRG00000018993) #11	KSR2 (ENSABRG00000018920) #12	NOS1 (ENSABRG00000018890) #13	FBXO21 (ENSABRG00000018879) #14	TESC (ENSABRG00000018871) #15	FBXW8 (ENSABRG00000018862) #16	RNFT2 (ENSABRG00000018853) #19	SPRING1 (ENSABRG00000018847) #20	MED13L (ENSABRG00000018816) #21	TBX3 (ENSABRG00000018787) #22	ENSABRG00000018782	TBX5 (ENSABRG00000018773) #23	RBM19 (ENSABRG00000018742) #24	SDSL (ENSABRG00000018724) #26	PLBD2 (ENSABRG00000018661) #28	SLC8B1 (ENSABRG00000018639) #29	TPCN1 (ENSABRG00000018437) #30	DDX54 (ENSABRG00000018394) #33	ENSABRG00000018387	VSIG10 (ENSABRG00000018380) #9	ENSABRG00000018376 #8	TAOK3 (ENSABRG00000018354) #7	SUDS3 (ENSABRG00000018345)	SRRM4 (ENSABRG00000018329)	HSPB8 (ENSABRG00000018319)
Galloanserae	ANCESTRAL SPECIES																	ENSGT00940000158066.h #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00940000158066.h #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00940000158066.h #22
Turkey	MODERN SPECIES	8	ENSMGAG00000010667	ENSMGAG00000010659	ATF1 (ENSMGAG00000010646)	DIP2B (ENSMGAG00000010609)	LARP4 (ENSMGAG00000010598)	LIMA1 (ENSMGAG00000010583)	CERS5 (ENSMGAG00000022719)	GPD1 (ENSMGAG00000017534)	SMARCD1 (ENSMGAG00000010566)	ASIC1 (ENSMGAG00000010535)	ENSMGAG00000010511	ENSMGAG00000010494	ENSMGAG00000010087 #24	ENSMGAG00000010075 #23	ENSMGAG00000022682 #22	ENSMGAG00000010084 #22	ENSMGAG00000010026 #21	ENSMGAG00000010021 #20	ENSMGAG00000010007 #19	ENSMGAG00000009977 #15	ENSMGAG00000009993 #16	FBXO21 (ENSMGAG00000009965) #14	ENSMGAG00000009947 #13	ENSMGAG00000022725	ENSMGAG00000010154 #30	ENSMGAG00000020665 #26	ENSMGAG00000021599 #25
Neognathae_b	ANCESTRAL SPECIES	31	ENSGT00940000154849.b	ENSGT00940000154191	ENSGT00940000161716	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Neognathae_c	ANCESTRAL SPECIES	16	ENSGT00940000167381	ENSGT00940000161716	ENSGT00940000161542	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Golden eagle	MODERN SPECIES	25	DTX1 (ENSACCG00020001500) #36	ENSACCG00020001476 #35	ENSACCG00020001457 #35	ENSACCG00020001440 #10	ENSACCG00020001421 #10	RFC5 (ENSACCG00020001397) #11	KSR2 (ENSACCG00020001348) #12	ENSACCG00020001320	NOS1 (ENSACCG00020001093) #13	FBXO21 (ENSACCG00020000851) #14	TESC (ENSACCG00020000805) #15	FBXW8 (ENSACCG00020000766) #16	RNFT2 (ENSACCG00020000740) #19	SPRING1 (ENSACCG00020000722) #20	MED13L (ENSACCG00020000684) #21	TBX3 (ENSACCG00020000651) #22	TBX5 (ENSACCG00020000621) #23	RBM19 (ENSACCG00020000596) #24	LHX5 (ENSACCG00020000567) #25	SDSL (ENSACCG00020000528) #26	PLBD2 (ENSACCG00020000509) #28	SLC8B1 (ENSACCG00020000484) #29	TPCN1 (ENSACCG00020000462) #30	RITA1 (ENSACCG00020008347) #32	DDX54 (ENSACCG00020008332) #33	CFAP73 (ENSACCG00020008307) #34	VSIG10 (ENSACCG00020008297) #9	ENSACCG00020008288 #8	TAOK3 (ENSACCG00020008260) #7	SUDS3 (ENSACCG00020008230)	SRRM4 (ENSACCG00020008212)
Kakapo	MODERN SPECIES	3	AP1B1 (ENSSHBG00005017059)	GAS2L1 (ENSSHBG00005017036)	EWSR1 (ENSSHBG00005017027)	EMID1 (ENSSHBG00005017019)	DTX1 (ENSSHBG00005017011) #36	WSB2 (ENSSHBG00005017005) #10	RFC5 (ENSSHBG00005016999) #11	KSR2 (ENSSHBG00005016995) #12	NOS1 (ENSSHBG00005016373) #13	FBXO21 (ENSSHBG00005016294) #14	TESC (ENSSHBG00005016280) #15	FBXW8 (ENSSHBG00005016275) #16	RNFT2 (ENSSHBG00005016262) #19	SPRING1 (ENSSHBG00005016259) #20	MED13L (ENSSHBG00005016242) #21	TBX3 (ENSSHBG00005016232) #22	TBX5 (ENSSHBG00005016217) #23	RBM19 (ENSSHBG00005016204) #24	ENSSHBG00005016190	LHX5 (ENSSHBG00005016179) #25	SDSL (ENSSHBG00005016172) #26	PLBD2 (ENSSHBG00005016160) #28	SLC8B1 (ENSSHBG00005016138) #29	TPCN1 (ENSSHBG00005016070) #30	RITA1 (ENSSHBG00005016025) #32	DDX54 (ENSSHBG00005016009) #33	ENSSHBG00005016000	VSIG10 (ENSSHBG00005015991) #9	ENSSHBG00005015985 #8	TAOK3 (ENSSHBG00005015972) #7	SUDS3 (ENSSHBG00005015958)
Passeriformes	ANCESTRAL SPECIES	15	ENSGT00940000153654	ENSGT00940000159978	ENSGT00550000074798.a.a	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856	ENSGT00390000008325.a	ENSGT00940000165952	ENSGT00940000162536	ENSGT00390000009387	ENSGT00390000017655	ENSGT00940000162972	ENSGT00940000153120.n.b.e.a.d.b.a	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT01040000242701	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Great tit	MODERN SPECIES	6	SNAP29 (ENSPMJG00000016805)	CLTCL1 (ENSPMJG00000016816)	SLC25A1 (ENSPMJG00000017282)	ENSPMJG00000017283	GSC2 (ENSPMJG00000017284)	ESS2 (ENSPMJG00000017285)	DGCR2 (ENSPMJG00000017286)	ENSPMJG00000017287	ENSPMJG00000017288	ENSPMJG00000017289	ENSPMJG00000017290	ENSPMJG00000017291	ENSPMJG00000017292	ENSPMJG00000017293	MED13L (ENSPMJG00000017294) #21	TBX3 (ENSPMJG00000017299) #22	TBX5 (ENSPMJG00000017301) #23	RBM19 (ENSPMJG00000017304) #24	ENSPMJG00000017305	LHX5 (ENSPMJG00000017306) #25	SDSL (ENSPMJG00000017307) #26	PLBD2 (ENSPMJG00000017308) #28	SLC8B1 (ENSPMJG00000017309) #29	TPCN1 (ENSPMJG00000017310) #30	DDX54 (ENSPMJG00000017313) #33	RITA1 (ENSPMJG00000017336) #32	ENSPMJG00000017337	VSIG10 (ENSPMJG00000017338) #9	ENSPMJG00000017339 #8	TAOK3 (ENSPMJG00000017340) #7	SUDS3 (ENSPMJG00000017341)
Passeriformes_d	ANCESTRAL SPECIES	14	ENSGT00940000153654	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.a	ENSGT00950000182843.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856	ENSGT00390000008325.a	ENSGT00940000165952	ENSGT00940000162536	ENSGT00390000009387	ENSGT00390000017655	ENSGT00940000162972	ENSGT00940000153120.n.b.e.a.c.a.b	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT01040000242701	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Flycatcher	MODERN SPECIES	6	SNAP29 (ENSFALG00000027386)	CLTCL1 (ENSFALG00000007848)	SLC25A1 (ENSFALG00000023073)	GSC2 (ENSFALG00000007838)	ESS2 (ENSFALG00000023144)	DGCR2 (ENSFALG00000028353)	ENSFALG00000007829	ENSFALG00000007828	ENSFALG00000025510	ENSFALG00000026038	ENSFALG00000023474	ENSFALG00000028778	ENSFALG00000028369	ENSFALG00000023845	MED13L (ENSFALG00000007810) #21	TBX3 (ENSFALG00000007792) #22	ENSFALG00000026464	TBX5 (ENSFALG00000007778) #23	RBM19 (ENSFALG00000007768) #24	SDSL (ENSFALG00000007755) #26	ENSFALG00000027487	LHX5 (ENSFALG00000007758) #25	PLBD2 (ENSFALG00000007752) #28	SLC8B1 (ENSFALG00000007750) #29	TPCN1 (ENSFALG00000007741) #30	ENSFALG00000007737 #33	ENSFALG00000028306 #32	ENSFALG00000028240	VSIG10 (ENSFALG00000007725) #9	ENSFALG00000028551 #8	TAOK3 (ENSFALG00000007713) #7
Passeriformes_g	ANCESTRAL SPECIES	14	ENSGT00550000074798.a.a	ENSGT00950000182843.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856	ENSGT00390000008325.a	ENSGT00940000165952	ENSGT00940000162536	ENSGT00390000009387	ENSGT00390000017655	ENSGT00940000162972	ENSGT00940000153120.n.b.e.a.c.a.b.a.b	ENSGT00940000153120.n.b.e.a.c.a.a.a.b	ENSGT00940000153120.n.b.e.a.c.b.a.b.a	ENSGT00940000153120.n.b.e.b	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT01040000242701	ENSGT00940000159876 #9	ENSGT00940000157251 #8	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Passeroidea	ANCESTRAL SPECIES	14	ENSGT00940000158664	ENSGT00550000074798.a.a	ENSGT00950000182843.a.b	ENSGT00950000183166.a.b	ENSGT00550000074856	ENSGT00940000165952	ENSGT00940000162536	ENSGT00390000009387	ENSGT00390000017655	ENSGT00940000162972	ENSGT00940000153120.n.b.e.a.c.a.b.a.b	ENSGT00940000153120.n.b.e.a.c.a.a.a.b	ENSGT00940000153120.n.b.e.a.c.b.a.b.a	ENSGT00940000153120.n.b.e.b	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT01040000242701	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00940000155735 #7	ENSGT00910000144281	ENSGT00730000111247
Common canary	MODERN SPECIES	18	SLC25A1 (ENSSCAG00000004558)	ENSSCAG00000004546	GSC2 (ENSSCAG00000004541)	ESS2 (ENSSCAG00000004539)	DGCR2 (ENSSCAG00000004535)	ENSSCAG00000004528	ENSSCAG00000004525	ENSSCAG00000004516	ENSSCAG00000004507	ENSSCAG00000004501	ENSSCAG00000004498	ENSSCAG00000004493	ENSSCAG00000004483	ENSSCAG00000004474	MED13L (ENSSCAG00000004463) #21	TBX3 (ENSSCAG00000004454) #22	TBX5 (ENSSCAG00000004449) #23	RBM19 (ENSSCAG00000004436) #24	ENSSCAG00000004433 #25	SDSL (ENSSCAG00000004412) #26	PLBD2 (ENSSCAG00000004401) #28	SLC8B1 (ENSSCAG00000004351) #29	TPCN1 (ENSSCAG00000004320) #30	DDX54 (ENSSCAG00000004313) #33	ENSSCAG00000004309	VSIG10 (ENSSCAG00000004306) #9	ENSSCAG00000004300 #8	TAOK3 (ENSSCAG00000004289) #7	SUDS3 (ENSSCAG00000004272)	SRRM4 (ENSSCAG00000004257)	HSPB8 (ENSSCAG00000004250)
Zebra finch	MODERN SPECIES	6	SNAP29 (ENSTGUG00000026457)	CLTCL1 (ENSTGUG00000008809)	SLC25A1 (ENSTGUG00000008870)	ENSTGUG00000018891	GSC2 (ENSTGUG00000028452)	ESS2 (ENSTGUG00000008886)	DGCR2 (ENSTGUG00000008905)	ENSTGUG00000008926	ENSTGUG00000008939	ENSTGUG00000029452	ENSTGUG00000025515	ENSTGUG00000008960	ENSTGUG00000018175	ENSTGUG00000028479	MED13L (ENSTGUG00000008964) #21	TBX3 (ENSTGUG00000020925) #22	TBX5 (ENSTGUG00000009001) #23	RBM19 (ENSTGUG00000009017) #24	LHX5 (ENSTGUG00000029257) #25	SDSL (ENSTGUG00000028861) #26	PLBD2 (ENSTGUG00000009057) #28	SLC8B1 (ENSTGUG00000009070) #29	TPCN1 (ENSTGUG00000009086) #30	RITA1 (ENSTGUG00000022233) #32	DDX54 (ENSTGUG00000009126) #33	ENSTGUG00000009154	PEBP1 (ENSTGUG00000009158) #8	TAOK3 (ENSTGUG00000009171) #7	SUDS3 (ENSTGUG00000024175)	SRRM4 (ENSTGUG00000009228)	HSPB8 (ENSTGUG00000009236)
Medium ground finch	MODERN SPECIES	33	ENSGFOG00000000559	GSC2 (ENSGFOG00000000594)	ESS2 (ENSGFOG00000000603)	DGCR2 (ENSGFOG00000000612)	ENSGFOG00000000641	ENSGFOG00000000746	ENSGFOG00000000978	ENSGFOG00000000990	ENSGFOG00000001023	ENSGFOG00000001031	ENSGFOG00000001049	ENSGFOG00000001104	ENSGFOG00000001133	ENSGFOG00000001142	MED13L (ENSGFOG00000001158) #21	TBX3 (ENSGFOG00000001177) #22	TBX5 (ENSGFOG00000001184) #23	RBM19 (ENSGFOG00000001193) #24	ENSGFOG00000001214	ENSGFOG00000001219 #25	SDSL (ENSGFOG00000001227) #26	SLC8B1 (ENSGFOG00000001257) #29	TPCN1 (ENSGFOG00000001353) #30	DDX54 (ENSGFOG00000001372) #33	ENSGFOG00000001386 #9	ENSGFOG00000001390 #8	TAOK3 (ENSGFOG00000001397) #7	SUDS3 (ENSGFOG00000001422)	SRRM4 (ENSGFOG00000001436)	HSPB8 (ENSGFOG00000001446)	PRKAB1 (ENSGFOG00000001458)
Australian saltwater crocodile	MODERN SPECIES	40									NOS1 (ENSCPRG00005007404) #13	FBXO21 (ENSCPRG00005007393) #14	TESC (ENSCPRG00005007383) #15	FBXW8 (ENSCPRG00005007377) #16	RNFT2 (ENSCPRG00005007365) #19	SPRING1 (ENSCPRG00005007362) #20	MED13L (ENSCPRG00005007331) #21	TBX3 (ENSCPRG00005007295) #22	TBX5 (ENSCPRG00005007290) #23	RBM19 (ENSCPRG00005007248) #24	LHX5 (ENSCPRG00005007231) #25	SDSL (ENSCPRG00005007215) #26	SDS (ENSCPRG00005007203) #27	PLBD2 (ENSCPRG00005007195) #28	SLC8B1 (ENSCPRG00005007182) #29	TPCN1 (ENSCPRG00005007128) #30	IQCD (ENSCPRG00005007121) #31	RITA1 (ENSCPRG00005007119) #32	DDX54 (ENSCPRG00005007112) #33	CFAP73 (ENSCPRG00005007106) #34	RASAL1 (ENSCPRG00005007045) #35	DTX1 (ENSCPRG00005007030) #36	ENSCPRG00005007017
Cryptodira	ANCESTRAL SPECIES	34	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00940000160448	ENSGT00940000154297.B	ENSGT00940000154637	ENSGT00390000017663	ENSGT00950000183101.b	ENSGT00390000006265.b
Testudinoidea	ANCESTRAL SPECIES	31	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00940000160448	ENSGT00940000153899.b.a	ENSGT00940000154637	ENSGT00390000017663.h	ENSGT00950000183101.b	ENSGT00390000006265.b
Emydidae	ANCESTRAL SPECIES	44	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00960000192527	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00940000160448	ENSGT00940000153899.b.a	ENSGT00940000154637	ENSGT00390000017663.h	ENSGT00950000183101.b	ENSGT00390000006265.b
Three-toed box turtle	MODERN SPECIES	410	SUDS3 (ENSTMTG00000006533)	TAOK3 (ENSTMTG00000006495) #7	ENSTMTG00000006482 #8	VSIG10 (ENSTMTG00000006461) #9	WSB2 (ENSTMTG00000006441) #10	RFC5 (ENSTMTG00000006404) #11	KSR2 (ENSTMTG00000006357) #12	NOS1 (ENSTMTG00000006267) #13	FBXO21 (ENSTMTG00000006231) #14	TESC (ENSTMTG00000006111) #15	FBXW8 (ENSTMTG00000006063) #16	ENSTMTG00000006050	RNFT2 (ENSTMTG00000005928) #19	SPRING1 (ENSTMTG00000005899) #20	MED13L (ENSTMTG00000005823) #21	TBX3 (ENSTMTG00000005799) #22	TBX5 (ENSTMTG00000005770) #23	RBM19 (ENSTMTG00000005728) #24	LHX5 (ENSTMTG00000005702) #25	SDSL (ENSTMTG00000005681) #26	SDS (ENSTMTG00000005642) #27	PLBD2 (ENSTMTG00000005606) #28	SLC8B1 (ENSTMTG00000005560) #29	TPCN1 (ENSTMTG00000005493) #30	IQCD (ENSTMTG00000005460) #31	AIFM3 (ENSTMTG00000005406)	ENSTMTG00000005389	SLC7A4 (ENSTMTG00000005370)	ENSTMTG00000005359	ENSTMTG00000005349	SCARF2 (ENSTMTG00000005330)
painted turtle	MODERN SPECIES	769	SRRM4 (ENSCPBG00000012293)	SUDS3 (ENSCPBG00000012287)	TAOK3 (ENSCPBG00000012282) #7	ENSCPBG00000012280 #8	VSIG10 (ENSCPBG00000012275) #9	WSB2 (ENSCPBG00000012270) #10	RFC5 (ENSCPBG00000012264) #11	KSR2 (ENSCPBG00000012248) #12	NOS1 (ENSCPBG00000012237) #13	FBXO21 (ENSCPBG00000012228) #14	TESC (ENSCPBG00000012225) #15	FBXW8 (ENSCPBG00000012037) #16	RNFT2 (ENSCPBG00000012028) #19	SPRING1 (ENSCPBG00000012024) #20	MED13L (ENSCPBG00000012017) #21	TBX3 (ENSCPBG00000012012) #22	TBX5 (ENSCPBG00000012002) #23	RBM19 (ENSCPBG00000011990) #24	LHX5 (ENSCPBG00000011984) #25	SDSL (ENSCPBG00000011975) #26	SDS (ENSCPBG00000011973) #27	PLBD2 (ENSCPBG00000011959) #28	SLC8B1 (ENSCPBG00000011952) #29	TPCN1 (ENSCPBG00000011937) #30	IQCD (ENSCPBG00000011929) #31	AIFM3 (ENSCPBG00000011920)	ENSCPBG00000011904	ENSCPBG00000011897
Testudinidae	ANCESTRAL SPECIES	40	ENSGT00910000144281	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00390000007050 #18	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00940000160448	ENSGT00940000153899.b.a	ENSGT00940000154637	ENSGT00390000017663.h	ENSGT00950000183101.b	ENSGT00390000006265.b
Goode s thornscrub tortoise	MODERN SPECIES	4	SUDS3 (ENSGEVG00005019885)	TAOK3 (ENSGEVG00005019894) #7	ENSGEVG00005019907 #8	VSIG10 (ENSGEVG00005019911) #9	WSB2 (ENSGEVG00005019920) #10	RFC5 (ENSGEVG00005019933) #11	KSR2 (ENSGEVG00005019942) #12	NOS1 (ENSGEVG00005019969) #13	FBXO21 (ENSGEVG00005019986) #14	TESC (ENSGEVG00005019993) #15	FBXW8 (ENSGEVG00005019997) #16	HRK (ENSGEVG00005020001) #18	RNFT2 (ENSGEVG00005020005) #19	SPRING1 (ENSGEVG00005020019) #20	MED13L (ENSGEVG00005020031) #21	TBX3 (ENSGEVG00005020071) #22	TBX5 (ENSGEVG00005020077) #23	RBM19 (ENSGEVG00005020099) #24	LHX5 (ENSGEVG00005020133) #25	SDSL (ENSGEVG00005007452) #26	SDS (ENSGEVG00005007522) #27	PLBD2 (ENSGEVG00005007605) #28	ENSGEVG00005008059 #29	TPCN1 (ENSGEVG00005008135) #30	IQCD (ENSGEVG00005008213) #31	AIFM3 (ENSGEVG00005008351)	ENSGEVG00005008571	SLC7A4 (ENSGEVG00005008634)	ENSGEVG00005008661	SCARF2 (ENSGEVG00005008693)	ENSGEVG00005009298
Abingdon island giant tortoise	MODERN SPECIES	2130	TAOK3 (ENSCABG00000001483) #7	ENSCABG00000001491 #8	VSIG10 (ENSCABG00000001493) #9	WSB2 (ENSCABG00000001495) #10	RFC5 (ENSCABG00000001504) #11	KSR2 (ENSCABG00000001507) #12	ENSCABG00000001511	NOS1 (ENSCABG00000001518) #13	FBXO21 (ENSCABG00000001533) #14	TESC (ENSCABG00000001541) #15	FBXW8 (ENSCABG00000001552) #16	ENSCABG00000001707	RNFT2 (ENSCABG00000001712) #19	SPRING1 (ENSCABG00000001732) #20	MED13L (ENSCABG00000001733) #21	TBX3 (ENSCABG00000001749) #22	TBX5 (ENSCABG00000001751) #23	RBM19 (ENSCABG00000001809) #24
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1070																ENSPSIG00000006299 #22
Chinese turtle	MODERN SPECIES	813																ENSPSIG00000004533 #22
Lepidosauria	ANCESTRAL SPECIES	13	ENSGT00940000155735 #7	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00960000192527	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000161542
Episquamata	ANCESTRAL SPECIES	10	ENSGT00940000154179.bb.a.a.c	ENSGT00940000153120.m.a.b	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000163122
Laterata	ANCESTRAL SPECIES	12		ENSGT00940000161345	ENSGT00940000157251.h #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00950000183203.d.e.b	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000157251.g #8
Common wall lizard	MODERN SPECIES	7	CHCHD10 (ENSPMRG00000021968)	ENSPMRG00000021974 #8	VSIG10 (ENSPMRG00000021988) #9	WSB2 (ENSPMRG00000022010) #10	RFC5 (ENSPMRG00000022062) #11	ENSPMRG00000022070	KSR2 (ENSPMRG00000022085) #12	NOS1 (ENSPMRG00000022223) #13	FBXO21 (ENSPMRG00000022405) #14	TESC (ENSPMRG00000022412) #15	FBXW8 (ENSPMRG00000022414) #16	RNFT2 (ENSPMRG00000022420) #19	SPRING1 (ENSPMRG00000022424) #20	ENSPMRG00000022428	MED13L (ENSPMRG00000022450) #21	TBX3 (ENSPMRG00000022485) #22	ENSPMRG00000022491	TBX5 (ENSPMRG00000022493) #23	RBM19 (ENSPMRG00000022518) #24	ENSPMRG00000022563	LHX5 (ENSPMRG00000022567) #25	SDSL (ENSPMRG00000022573) #26	ENSPMRG00000022578 #27	ENSPMRG00000022581 #27	PLBD2 (ENSPMRG00000022585) #28	SLC8B1 (ENSPMRG00000022593) #29	TPCN1 (ENSPMRG00000022600) #30	IQCD (ENSPMRG00000022607) #31	RITA1 (ENSPMRG00000022611) #32	DDX54 (ENSPMRG00000022614) #33	CFAP73 (ENSPMRG00000022636) #34
Argentine black and white tegu	MODERN SPECIES	41	CHCHD10 (ENSSMRG00000014499)	ENSSMRG00000014500 #8	VSIG10 (ENSSMRG00000014501) #9	WSB2 (ENSSMRG00000014502) #10	RFC5 (ENSSMRG00000014504) #11	KSR2 (ENSSMRG00000014505) #12	NOS1 (ENSSMRG00000014507) #13	FBXO21 (ENSSMRG00000014508) #14	TESC (ENSSMRG00000014510) #15	FBXW8 (ENSSMRG00000014511) #16	ENSSMRG00000014512	RNFT2 (ENSSMRG00000014513) #19	SPRING1 (ENSSMRG00000014515) #20	MED13L (ENSSMRG00000014517) #21	ENSSMRG00000014518	TBX3 (ENSSMRG00000014522) #22	TBX5 (ENSSMRG00000014525) #23	RBM19 (ENSSMRG00000014527) #24	LHX5 (ENSSMRG00000014530) #25	SDSL (ENSSMRG00000014531) #26	SDS (ENSSMRG00000014532) #27	PLBD2 (ENSSMRG00000014533) #28	SLC8B1 (ENSSMRG00000014534) #29	TPCN1 (ENSSMRG00000014535) #30	IQCD (ENSSMRG00000014536) #31	RITA1 (ENSSMRG00000014537) #32	DDX54 (ENSSMRG00000014538) #33	CFAP73 (ENSSMRG00000014539) #34	DTX1 (ENSSMRG00000014540) #36	TAOK3 (ENSSMRG00000014541) #7	SUDS3 (ENSSMRG00000014542)
Toxicofera	ANCESTRAL SPECIES	11	ENSGT00940000161517.C	ENSGT00940000161345	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000163122
Elapidae	ANCESTRAL SPECIES	39	ENSGT00940000161517.C	ENSGT00940000161345	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000169488.b	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000155735 #7
Indian cobra	MODERN SPECIES	16	ENSNNAG00000004485	CHCHD10 (ENSNNAG00000004474)	ENSNNAG00000004456 #8	VSIG10 (ENSNNAG00000004436) #9	ENSNNAG00000004418 #10	ENSNNAG00000004396 #10	RFC5 (ENSNNAG00000004380) #11	ENSNNAG00000004346	KSR2 (ENSNNAG00000004266) #12	NOS1 (ENSNNAG00000003992) #13	TESC (ENSNNAG00000003884) #15	FBXW8 (ENSNNAG00000003843) #16	RNFT2 (ENSNNAG00000003823) #19	SPRING1 (ENSNNAG00000003803) #20	MED13L (ENSNNAG00000018881) #21	TBX3 (ENSNNAG00000018869) #22	TBX5 (ENSNNAG00000018866) #23	RBM19 (ENSNNAG00000018856) #24	LHX5 (ENSNNAG00000018847) #25	SDSL (ENSNNAG00000018842) #26	SDS (ENSNNAG00000018836) #27	SLC8B1 (ENSNNAG00000018830) #29	TPCN1 (ENSNNAG00000018808) #30	IQCD (ENSNNAG00000018795) #31	RITA1 (ENSNNAG00000018792) #32	DDX54 (ENSNNAG00000018786) #33	CFAP73 (ENSNNAG00000018782) #34	RASAL1 (ENSNNAG00000018774) #35	DTX1 (ENSNNAG00000018766) #36	TAOK3 (ENSNNAG00000018763) #7	SUDS3 (ENSNNAG00000018761)
Elapidae_a	ANCESTRAL SPECIES	72	ENSGT00940000153120.m.a.b	ENSGT00940000161517.C	ENSGT00940000161345	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000155735 #7
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	3133																ENSLLTG00000017884 #22	ENSLLTG00000017885 #22
Blue-lipped sea krait	MODERN SPECIES	3133															ENSLLTG00000017884 #22	ENSLLTG00000017885 #22
Acanthophiinae	ANCESTRAL SPECIES	68	ENSGT00940000153120.m.a.b	ENSGT00940000161517.C	ENSGT00940000161345	ENSGT00940000157251 #8	ENSGT00940000159876 #9	ENSGT00890000139406.b #10	ENSGT00550000075072 #11	ENSGT00940000158519 #12	ENSGT00940000159357 #13	ENSGT00390000005653 #14	ENSGT00940000155845 #15	ENSGT00390000017221 #16	ENSGT00940000158419 #19	ENSGT00390000008031 #20	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00390000013005 #32	ENSGT00550000075100 #33	ENSGT00940000153110.D #34	ENSGT00940000158715 #35	ENSGT00940000160943 #36	ENSGT00940000155735 #7
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	1088																ENSPTXG00000017116 #22
Eastern brown snake	MODERN SPECIES	1087																ENSPTXG00000017115 #22
Mainland tiger snake	MODERN SPECIES	569																TBX3 (ENSNSUG00000017624) #22	TBX5 (ENSNSUG00000017622) #23
Anura	ANCESTRAL SPECIES	4	ENSGT00940000161685.B	ENSGT00940000155991	ENSGT00940000165465	ENSGT00940000154849.b	ENSGT00940000154191	ENSGT00390000013711	ENSGT00940000164061	ENSGT00940000160943 #36	ENSGT00940000158715 #35	ENSGT00940000153110.D #34	ENSGT00550000075100 #33	ENSGT00390000013005 #32	ENSGT00730000111354 #31	ENSGT00940000158958 #30	ENSGT00390000013680.a #21	ENSGT00940000158066 #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00390000008873	ENSGT00900000141107	ENSGT00390000015813	ENSGT00390000017134	ENSGT00940000156488	ENSGT00940000156133	ENSGT00390000018635.d	ENSGT00940000155403.a
Frog	MODERN SPECIES		GAS2L1 (ENSXETG00000016415)	ENSXETG00000043443	ewsr1 (ENSXETG00000024796)	rhbdd3 (ENSXETG00000024797)	emid1 (ENSXETG00000016414)	dtx1 (ENSXETG00000016413) #36	rasal1 (ENSXETG00000016412) #35	cfap73 (ENSXETG00000016411) #34	ddx54 (ENSXETG00000016410) #33	rita1 (ENSXETG00000016409) #32	iqcd (ENSXETG00000016407) #31	TPCN1 (ENSXETG00000037276) #30	med13l (ENSXETG00000006581) #21	mgc75582 (ENSXETG00000027434)	ENSXETG00000034687	tbx3 (ENSXETG00000006579) #22	tbx5 (ENSXETG00000017688) #23	rbm19 (ENSXETG00000017668) #24	lhx5 (ENSXETG00000017665) #25	sdsl (ENSXETG00000017659) #26	sds (ENSXETG00000017653) #27	plbd2 (ENSXETG00000017657) #28	slc8b1 (ENSXETG00000017655) #29	ficd (ENSXETG00000017652)	sart3 (ENSXETG00000017645)	iscu (ENSXETG00000027428)	tmem119 (ENSXETG00000042242)	coro1c (ENSXETG00000022312)	ssh1 (ENSXETG00000022310)	dao (ENSXETG00000022308)	svop (ENSXETG00000022304)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000002876	DTX1 (ENSLLEG00000002857) #36	RASAL1 (ENSLLEG00000002812) #35	CFAP73 (ENSLLEG00000002791) #34	DDX54 (ENSLLEG00000002769) #33	RITA1 (ENSLLEG00000002750) #32	IQCD (ENSLLEG00000002734) #31	TPCN1 (ENSLLEG00000002589) #30	ENSLLEG00000002553	ENSLLEG00000002544	ENSLLEG00000002541	ENSLLEG00000002522	MED13L (ENSLLEG00000002466) #21	ENSLLEG00000002449	ENSLLEG00000002446	TBX3 (ENSLLEG00000002424) #22	ENSLLEG00000002403	ENSLLEG00000002398	ENSLLEG00000002381	TBX5 (ENSLLEG00000002351) #23	RBM19 (ENSLLEG00000002300) #24	ENSLLEG00000002281	ENSLLEG00000002270	ENSLLEG00000002259	LHX5 (ENSLLEG00000002244) #25	ENSLLEG00000002197	ENSLLEG00000002188	SDSL (ENSLLEG00000002140) #26	SDS (ENSLLEG00000002090) #27	PLBD2 (ENSLLEG00000002058) #28	SLC8B1 (ENSLLEG00000002026) #29
Coelacanth	MODERN SPECIES	1806																TBX3 (ENSLACG00000006293) #22	TBX5 (ENSLACG00000002339) #23
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000158066.o #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000158066.o #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000158066.o #22
Clupeocephala	ANCESTRAL SPECIES	29	ENSGT00390000013158	ENSGT00390000018644	ENSGT00960000188057	ENSGT00940000156763.b.b	ENSGT00390000000459.c	ENSGT00940000164721.a	ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Euteleosteomorpha	ANCESTRAL SPECIES	15	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00390000000459.c	ENSGT00940000164721.a	ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a	ENSGT00770000121827	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Acanthomorphata	ANCESTRAL SPECIES	46	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT01010000224027	ENSGT00390000000459.c	ENSGT00940000164721.a	ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a	ENSGT00770000121827	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Euacanthomorphacea	ANCESTRAL SPECIES	22	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00390000000459.c	ENSGT00940000164721.a	ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a	ENSGT00770000121827	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00390000000459.c	ENSGT00940000164721.a	ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a	ENSGT00770000121827	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00770000121827	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000156516	ENSGT00740000116886	ENSGT00940000160018	ENSGT00940000155771.d	ENSGT00730000110989.c.b	ENSGT00490000043395	ENSGT00940000165661	ENSGT00390000012355.A.a.a.a	ENSGT00530000063681.b.a	ENSGT00390000012710.a.b.g.a	ENSGT00390000012710.a.b.g.b	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00940000166509	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Tetraodontidae	ANCESTRAL SPECIES	24	ENSGT00390000008529	ENSGT00940000164254.a.a	ENSGT00940000159598	ENSGT00940000164226.a.a	ENSGT00940000154314.b	ENSGT00940000160547	ENSGT00940000155860.a	ENSGT00940000160296	ENSGT00720000108860	ENSGT00430000031027.a	ENSGT00390000017892	ENSGT00940000156117.e.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419	ENSGT00940000153974.B	ENSGT00940000157488.g
Tetraodon	MODERN SPECIES	3	CABIN1 (ENSTNIG00000011486)	tbx16 (ENSTNIG00000011487)	KLHL22 (ENSTNIG00000011488)	npy8br (ENSTNIG00000011489)	ENSTNIG00000001458	kctd9a (ENSTNIG00000011490)	ankrd39 (ENSTNIG00000011491)	fgfr1a (ENSTNIG00000018850)	lgi3 (ENSTNIG00000018851)	chmp7 (ENSTNIG00000018852)	ccdc92 (ENSTNIG00000018853)	ptar1 (ENSTNIG00000018854)	mamdc2a (ENSTNIG00000018855)	zfr (ENSTNIG00000018856)	lman2lb (ENSTNIG00000018857)	ENSTNIG00000018858 #22	tm2d2 (ENSTNIG00000018859)	loxl2b (ENSTNIG00000018860)	ENSTNIG00000018861	sfrp1a (ENSTNIG00000018862)	ZMAT4 (ENSTNIG00000018863)	tcima (ENSTNIG00000000600)	adam28 (ENSTNIG00000018864)	ppp3cca (ENSTNIG00000018865)	vps37ba (ENSTNIG00000000344)	abcb9 (ENSTNIG00000018866)	zgc:113436 (ENSTNIG00000000394)	ogfod2 (ENSTNIG00000018867)	SLC4A5 (ENSTNIG00000018868)	zgc:110329 (ENSTNIG00000018869)	TACR1 (ENSTNIG00000018870)
Fugu	MODERN SPECIES	13	tbx16 (ENSTRUG00000016468)	KLHL22 (ENSTRUG00000016481)	npy8br (ENSTRUG00000016504)	ENSTRUG00000016506	kctd9a (ENSTRUG00000016510)	ankrd39 (ENSTRUG00000016523)	fgfr1a (ENSTRUG00000016527)	lgi3 (ENSTRUG00000016585)	chmp7 (ENSTRUG00000016602)	ccdc92 (ENSTRUG00000031979)	ptar1 (ENSTRUG00000029822)	mamdc2a (ENSTRUG00000016613)	zfr (ENSTRUG00000016620)	ENSTRUG00000030419	lman2lb (ENSTRUG00000016637)	ENSTRUG00000021387 #22	tm2d2 (ENSTRUG00000016646)	KCNIP3 (ENSTRUG00000016652)	SLC23A2 (ENSTRUG00000016666)	rassf2a (ENSTRUG00000021635)	ENSTRUG00000016699	prp2 (ENSTRUG00000016701)	ENSTRUG00000021560	ENSTRUG00000025467	mrps36 (ENSTRUG00000033470)	pdxp (ENSTRUG00000016711)	UGT3A2 (ENSTRUG00000016713)	spef2 (ENSTRUG00000016716)	lifra (ENSTRUG00000016730)	ENSTRUG00000016733	cdo1 (ENSTRUG00000020607)
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00940000158884	ENSGT00940000156516	ENSGT00740000116886	ENSGT00940000160018	ENSGT00940000155771.d	ENSGT00730000110989.c.b	ENSGT00490000043395	ENSGT00940000165661	ENSGT00390000012355.A.a.a.a	ENSGT00530000063681.b.a	ENSGT00390000012710.a.b.h	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00940000166509	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Ballan wrasse	MODERN SPECIES	9	zgc:64051 (ENSLBEG00000001290)	araf (ENSLBEG00000001185)	imp4 (ENSLBEG00000001068)	RABL6 (ENSLBEG00000001014)	TRAF2 (ENSLBEG00000000965)	tncb (ENSLBEG00000000477)	ENSLBEG00000000417	ENSLBEG00000000409	ENSLBEG00000000383	ENSLBEG00000000338	nsmfb (ENSLBEG00000000235)	ENSLBEG00000000217	ENSLBEG00000027445	ENSLBEG00000027435	lman2lb (ENSLBEG00000027421)	ENSLBEG00000027392 #22	tm2d2 (ENSLBEG00000027358)	ENSLBEG00000027318	ENSLBEG00000027288	UNC5D (ENSLBEG00000027217)	hdr (ENSLBEG00000027177)	cyb561a3a (ENSLBEG00000027165)	loxl2b (ENSLBEG00000027152)	GOLGA7 (ENSLBEG00000027132)	sfrp1a (ENSLBEG00000027112)	ENSLBEG00000027088	pdgfab (ENSLBEG00000027063)	prkar1b (ENSLBEG00000027034)	DNAAF5 (ENSLBEG00000027004)	GDE1 (ENSLBEG00000026990)	MCRIP2 (ENSLBEG00000026979)
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT01030000234983	ENSGT00940000158884	ENSGT00940000156516	ENSGT00740000116886	ENSGT00940000160018	ENSGT00940000155771.d	ENSGT00730000110989.c.b	ENSGT00490000043395	ENSGT00940000165661	ENSGT00390000012355.A.a.a.a	ENSGT00530000063681.b.a	ENSGT00940000155290.C	ENSGT01030000234773	ENSGT00940000166509	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Perciformes	ANCESTRAL SPECIES	6						ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Cottioidei	ANCESTRAL SPECIES	58	ENSGT00940000156820.a.a.f	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458
Lumpfish	MODERN SPECIES	24	ENSCLMG00005004970	ptar1 (ENSCLMG00005004969)	APBA1 (ENSCLMG00005004967)	adam28 (ENSCLMG00005004964)	ppp3cca (ENSCLMG00005004235)	vps37ba (ENSCLMG00005004228)	abcb9 (ENSCLMG00005004226)	RABL6 (ENSCLMG00005004221)	TRAF2 (ENSCLMG00005004208)	tncb (ENSCLMG00005002270)	ENSCLMG00005002251	ENSCLMG00005002246	nsmfb (ENSCLMG00005002243)	ENSCLMG00005002238	lman2lb (ENSCLMG00005002235)	ENSCLMG00005002233 #22	tm2d2 (ENSCLMG00005002230)	ENSCLMG00005002181	ENSCLMG00005002175	ENSCLMG00005002173	UNC5D (ENSCLMG00005002056)	hdr (ENSCLMG00005002046)	cyb561a3a (ENSCLMG00005002043)	loxl2b (ENSCLMG00005001138)	GOLGA7 (ENSCLMG00005001132)	sfrp1a (ENSCLMG00005001131)	ENSCLMG00005001130	ENSCLMG00005001129	rpl35 (ENSCLMG00005001127)	RPL35 (ENSCLMG00005001125)	golga1 (ENSCLMG00005001114)
Perciformes_a	ANCESTRAL SPECIES	31	ENSGT00390000005811	ENSGT00940000155305.b.a	ENSGT00940000159721.g	ENSGT00510000048902.a.e	ENSGT00940000155290.C	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22
Channel bull blenny	MODERN SPECIES	23	FUT7 (ENSCGOG00000005798)	ABCA2 (ENSCGOG00000005859)	ENSCGOG00000008545	PIP5KL1 (ENSCGOG00000008552)	ENSCGOG00000008560	ppm1f (ENSCGOG00000008563)	TOP3B (ENSCGOG00000008598)	ENSCGOG00000009230	sdf2l1 (ENSCGOG00000009234)	marveld2b (ENSCGOG00000009237)	oclnb (ENSCGOG00000009240)	gtf2h2 (ENSCGOG00000009256)	dhfr (ENSCGOG00000009774)	fam151b (ENSCGOG00000009776)	lman2lb (ENSCGOG00000009784)	ENSCGOG00000009807 #22	ENSCGOG00000009812	ENSCGOG00000009815
Pike perch	MODERN SPECIES	386											ENSSLUG00000006202	nsmfb (ENSSLUG00000006155)	ENSSLUG00000006144	ENSSLUG00000006136	lman2lb (ENSSLUG00000006131)	ENSSLUG00000006122 #22	DONSON (ENSSLUG00000006116)
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Carangaria	ANCESTRAL SPECIES	9	ENSGT00940000156763.b.b	ENSGT00390000013158	ENSGT00390000018644	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00940000156763.b.b	ENSGT00390000013158	ENSGT00390000018644	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Seriola	ANCESTRAL SPECIES	7	ENSGT00940000156763.b.b	ENSGT00390000013158	ENSGT00390000018644	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT01010000224027	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000164419	ENSGT00940000153974.B
Yellowtail amberjack	MODERN SPECIES	3287	PIP5KL1 (ENSSLDG00000011958)	PNPLA7 (ENSSLDG00000011990)	dph7 (ENSSLDG00000012074)	mrpl41 (ENSSLDG00000012096)	zgc:64051 (ENSSLDG00000012110)	araf (ENSSLDG00000012136)	imp4 (ENSSLDG00000012188)	RABL6 (ENSSLDG00000012208)	TRAF2 (ENSSLDG00000012317)	tncb (ENSSLDG00000012406)	ENSSLDG00000012497	ENSSLDG00000012532	nsmfb (ENSSLDG00000012595)	ENSSLDG00000012685	lman2lb (ENSSLDG00000012701)	ENSSLDG00000012719 #22	tm2d2 (ENSSLDG00000012733)	ENSSLDG00000012755	UNC5D (ENSSLDG00000012783)	hdr (ENSSLDG00000012820)	cyb561a3a (ENSSLDG00000012850)	loxl2b (ENSSLDG00000012869)	GOLGA7 (ENSSLDG00000012903)	sfrp1a (ENSSLDG00000012926)	ZMAT4 (ENSSLDG00000012934)	tcima (ENSSLDG00000012948)	adam28 (ENSSLDG00000012971)	ppp3cca (ENSSLDG00000013023)	vps37ba (ENSSLDG00000013072)	ENSSLDG00000013084	zgc:113436 (ENSSLDG00000013104)
Barramundi perch	MODERN SPECIES	95	ENSLCAG00010027304	sh3glb2a (ENSLCAG00010027311)	zfr (ENSLCAG00010027324)	ENSLCAG00010027333	ENSLCAG00010027334	npr3 (ENSLCAG00010027335)	ENSLCAG00010027337	ENSLCAG00010027345	TRAF2 (ENSLCAG00010027349)	tncb (ENSLCAG00010027360)	ENSLCAG00010027370	ENSLCAG00010027372	nsmfb (ENSLCAG00010027375)	ENSLCAG00010027377	lman2lb (ENSLCAG00010027379)	ENSLCAG00010027380 #22	tm2d2 (ENSLCAG00010027383)	HTRA4 (ENSLCAG00010027384)	UNC5D (ENSLCAG00010027395)	hdr (ENSLCAG00010027423)	cyb561a3a (ENSLCAG00010027428)	loxl2b (ENSLCAG00010027448)	GOLGA7 (ENSLCAG00010027472)	sfrp1a (ENSLCAG00010027475)	ZMAT4 (ENSLCAG00010027477)	tcima (ENSLCAG00010027480)	adam28 (ENSLCAG00010027484)	ppp3cca (ENSLCAG00010027529)	vps37ba (ENSLCAG00010027566)	abcb9 (ENSLCAG00010027567)	zgc:113436 (ENSLCAG00010027572)
Pleuronectoidei	ANCESTRAL SPECIES	8																ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Turbot	MODERN SPECIES	21	isl1a (ENSSMAG00000000228)	ENSSMAG00000023073	ccdc125 (ENSSMAG00000021971)	ENSSMAG00000024431	zgc:86811 (ENSSMAG00000023550)	ENSSMAG00000034299	ENSSMAG00000021713	ENSSMAG00000035488	ENSSMAG00000016781	ENSSMAG00000016993	mamdc2a (ENSSMAG00000017071)	PTAR1 (ENSSMAG00000017170)	APBA1 (ENSSMAG00000017237)	FXN (ENSSMAG00000031712)	ENSSMAG00000017306	ENSSMAG00000017449 #22	tm2d2 (ENSSMAG00000026737)	ENSSMAG00000034039	ENSSMAG00000017502	ENSSMAG00000017524	ENSSMAG00000017529	hdr (ENSSMAG00000017565)	ENSSMAG00000020158	cyb561a3a (ENSSMAG00000017569)	loxl2b (ENSSMAG00000017593)	ENSSMAG00000017648	GOLGA7 (ENSSMAG00000017659)	sfrp1a (ENSSMAG00000017680)	ZMAT4 (ENSSMAG00000017693)	ENSSMAG00000012645	tcima (ENSSMAG00000017751)
Anabantaria	ANCESTRAL SPECIES	4	ENSGT01060000248544.b	ENSGT00940000155841.c.a	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00940000158884	ENSGT01090000260180	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b.d	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Climbing perch	MODERN SPECIES	22	ENSATEG00000028639	ENSATEG00000011767	dph7 (ENSATEG00000011800)	ENSATEG00000011838	PNPLA7 (ENSATEG00000011876)	zgc:64051 (ENSATEG00000011926)	araf (ENSATEG00000011967)	imp4 (ENSATEG00000012019)	ENSATEG00000012055	ENSATEG00000012127	tncb (ENSATEG00000012176)	ENSATEG00000012193	ENSATEG00000012208	nsmfb (ENSATEG00000012227)	lman2lb (ENSATEG00000028704)	ENSATEG00000012297 #22	tm2d2 (ENSATEG00000026282)	ENSATEG00000012343	ENSATEG00000012371	hdr (ENSATEG00000012419)	cyb561a3a (ENSATEG00000012429)	loxl2b (ENSATEG00000012506)	GOLGA7 (ENSATEG00000028606)	sfrp1a (ENSATEG00000012617)	ZMAT4 (ENSATEG00000012630)	tcima (ENSATEG00000012681)	adam28 (ENSATEG00000012712)	ppp3cca (ENSATEG00000012726)	vps37ba (ENSATEG00000012792)	abcb9 (ENSATEG00000012815)	abcb9 (ENSATEG00000028830)
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000021054	paxx (ENSBSLG00000021020)	dph7 (ENSBSLG00000020973)	mrpl41 (ENSBSLG00000020926)	PNPLA7 (ENSBSLG00000019851)	zgc:64051 (ENSBSLG00000019782)	araf (ENSBSLG00000019495)	imp4 (ENSBSLG00000019440)	RABL6 (ENSBSLG00000019406)	TRAF2 (ENSBSLG00000018804)	tncb (ENSBSLG00000017538)	ENSBSLG00000017454	ENSBSLG00000017382	nsmfb (ENSBSLG00000016800)	lman2lb (ENSBSLG00000016685)	ENSBSLG00000016622 #22	tm2d2 (ENSBSLG00000016590)	ENSBSLG00000015713	ENSBSLG00000015654	noxa1 (ENSBSLG00000015647)	ENSBSLG00000015643	dpp7 (ENSBSLG00000015370)	ENSBSLG00000015340	ENSBSLG00000015241	ENSBSLG00000015228	ENSBSLG00000015227	ENSBSLG00000015220	ENSBSLG00000015200
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00770000121827	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00770000121827	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00770000121827	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00770000121827	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00770000121827	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b.a.a	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Platyfish	MODERN SPECIES	3	ranbp1 (ENSXMAG00000002443)	trmt2a (ENSXMAG00000002434)	ENSXMAG00000022575	dgcr8 (ENSXMAG00000002426)	tango2 (ENSXMAG00000002411)	arvcfb (ENSXMAG00000002404)	TXNRD2 (ENSXMAG00000002378)	gnb1l (ENSXMAG00000002374)	tbx1 (ENSXMAG00000002370)	sema4c (ENSXMAG00000002351)	ENSXMAG00000022670	kat6a (ENSXMAG00000010515)	ENSXMAG00000026852	lman2lb (ENSXMAG00000024814)	ENSXMAG00000021698	ENSXMAG00000021702 #22	tm2d2 (ENSXMAG00000010513)	ENSXMAG00000028799	UNC5D (ENSXMAG00000010494)	ENSXMAG00000023255	hdr (ENSXMAG00000010490)	cyb561a3a (ENSXMAG00000010489)	loxl2b (ENSXMAG00000010470)	ENSXMAG00000010467	sfrp1a (ENSXMAG00000010463)	ENSXMAG00000010461	ppp3cca (ENSXMAG00000010337)	adam28 (ENSXMAG00000010382)	vps37ba (ENSXMAG00000029334)	abcb9 (ENSXMAG00000010308)	zgc:113436 (ENSXMAG00000010305)
Poecilia	ANCESTRAL SPECIES	3	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00770000121827	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b.a.a	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Guppy	MODERN SPECIES	461	ENSPREG00000013677	dph7 (ENSPREG00000013831)	mrpl41 (ENSPREG00000013847)	PNPLA7 (ENSPREG00000013878)	araf (ENSPREG00000013979)	zgc:64051 (ENSPREG00000014053)	imp4 (ENSPREG00000014067)	RABL6 (ENSPREG00000014116)	TRAF2 (ENSPREG00000014280)	tncb (ENSPREG00000014329)	ENSPREG00000014565	ENSPREG00000014597	nsmfb (ENSPREG00000014675)	ENSPREG00000014693	ENSPREG00000014710	ENSPREG00000014717 #22	tm2d2 (ENSPREG00000014733)	ENSPREG00000014740	UNC5D (ENSPREG00000014773)	hdr (ENSPREG00000014807)	cyb561a3a (ENSPREG00000014820)	loxl2b (ENSPREG00000014843)	GOLGA7 (ENSPREG00000014883)	sfrp1a (ENSPREG00000014903)	ENSPREG00000014914	ENSPREG00000014925	tcima (ENSPREG00000014933)	adam28 (ENSPREG00000014950)	ppp3cca (ENSPREG00000014983)	vps37ba (ENSPREG00000015058)	abcb9 (ENSPREG00000015084)
NAME_4	ANCESTRAL SPECIES	43	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00390000016002.p	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419	ENSGT00940000153974.B
Mummichog	MODERN SPECIES	236	mrpl41 (ENSFHEG00000022081)	PNPLA7 (ENSFHEG00000022113)	zgc:64051 (ENSFHEG00000022136)	araf (ENSFHEG00000022191)	imp4 (ENSFHEG00000022246)	RABL6 (ENSFHEG00000022285)	ENSFHEG00000022302	TRAF2 (ENSFHEG00000022358)	ENSFHEG00000022378	tncb (ENSFHEG00000022409)	ENSFHEG00000022419	ENSFHEG00000022486	nsmfb (ENSFHEG00000022577)	ENSFHEG00000022586	lman2lb (ENSFHEG00000022592)	ENSFHEG00000022601 #22	tm2d2 (ENSFHEG00000022610)	ENSFHEG00000022628	UNC5D (ENSFHEG00000022678)	hdr (ENSFHEG00000022690)	cyb561a3a (ENSFHEG00000022724)	loxl2b (ENSFHEG00000022797)	GOLGA7 (ENSFHEG00000022830)	sfrp1a (ENSFHEG00000022843)	ENSFHEG00000022872	tcima (ENSFHEG00000022911)	adam28 (ENSFHEG00000022932)	ppp3cca (ENSFHEG00000022988)	ENSFHEG00000023003	vps37ba (ENSFHEG00000023017)	abcb9 (ENSFHEG00000023024)
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00940000155841.c.a	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.k	ENSGT00940000160760.b.l.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a
Pomacentridae	ANCESTRAL SPECIES		ENSGT00940000155841.c.a	ENSGT00390000018644	ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.l.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Bicolor damselfish	MODERN SPECIES	2473																ENSSPAG00000011664 #22	tm2d2 (ENSSPAG00000011685)	ENSSPAG00000011712
Pomacentridae_A	ANCESTRAL SPECIES	166					ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.l.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888
Amphiprion	ANCESTRAL SPECIES	40	ENSGT00940000156763.b.b	ENSGT00940000158049.g.b.a	ENSGT00940000160404	ENSGT00940000160570	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.l.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00940000156771.h	ENSGT00940000159010.b	ENSGT00940000153189.A	ENSGT00940000153710.a	ENSGT00940000157986	ENSGT00390000018806
Orange clownfish	MODERN SPECIES	19	pomt1 (ENSAPEG00000017036)	ENSAPEG00000017092	ENSAPEG00000017108	ENSAPEG00000017120	zgc:64051 (ENSAPEG00000017133)	araf (ENSAPEG00000017172)	imp4 (ENSAPEG00000017240)	RABL6 (ENSAPEG00000017278)	TRAF2 (ENSAPEG00000017341)	tncb (ENSAPEG00000017434)	ENSAPEG00000017757	ENSAPEG00000017768	nsmfb (ENSAPEG00000017812)	ENSAPEG00000017959	lman2lb (ENSAPEG00000017966)	ENSAPEG00000017997 #22	tm2d2 (ENSAPEG00000018039)	ENSAPEG00000018061	UNC5D (ENSAPEG00000018218)	hdr (ENSAPEG00000018288)	cyb561a3a (ENSAPEG00000018362)	loxl2b (ENSAPEG00000018430)	GOLGA7 (ENSAPEG00000018465)	sfrp1a (ENSAPEG00000018503)	ENSAPEG00000018537	ENSAPEG00000018565	mapk1 (ENSAPEG00000018577)	ENSAPEG00000018640	ppil2 (ENSAPEG00000018672)	stambpb (ENSAPEG00000018691)	slc39a14 (ENSAPEG00000018729)
Cichlidae	ANCESTRAL SPECIES	29	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000158049	ENSGT00940000160404	ENSGT00940000160570	ENSGT00940000153246.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.k	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Pseudocrenilabrinae	ANCESTRAL SPECIES	26	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000158049	ENSGT00940000160404	ENSGT00940000160570	ENSGT00940000153246.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.k	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716.`b	ENSGT00940000156716.ab	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	28	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a	ENSGT00940000155188.B.b	ENSGT00940000158049	ENSGT00940000160404	ENSGT00940000160570	ENSGT00940000153246.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.k	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716.`b	ENSGT00940000156716.ab	ENSGT00940000166302	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a.f
Lyretail cichlid	MODERN SPECIES	340	PNPLA7 (ENSNBRG00000012640)	zgc:64051 (ENSNBRG00000012598)	araf (ENSNBRG00000012554)	imp4 (ENSNBRG00000012538)	RABL6 (ENSNBRG00000012512)	TRAF2 (ENSNBRG00000012483)	tncb (ENSNBRG00000012283)	pomt1 (ENSNBRG00000012227)	ENSNBRG00000012213	CARD9 (ENSNBRG00000012184)	ENSNBRG00000012172	ENSNBRG00000012148	nsmfb (ENSNBRG00000012120)	ENSNBRG00000012089	lman2lb (ENSNBRG00000012077)	ENSNBRG00000012066 #22	tm2d2 (ENSNBRG00000012052)	ENSNBRG00000012020	ENSNBRG00000012007	UNC5D (ENSNBRG00000011962)	hdr (ENSNBRG00000011941)	cyb561a3a (ENSNBRG00000011925)	loxl2b (ENSNBRG00000011908)	GOLGA7 (ENSNBRG00000011888)	sfrp1a (ENSNBRG00000011863)	ZMAT4 (ENSNBRG00000011844)	tcima (ENSNBRG00000011831)	adam28 (ENSNBRG00000011780)	ppp3cca (ENSNBRG00000011730)	vps37ba (ENSNBRG00000011718)	ENSNBRG00000011710
Haplochromini	ANCESTRAL SPECIES	69	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a.c	ENSGT00940000156621.e.a.d.b	ENSGT00940000155188.B.b	ENSGT00940000158049	ENSGT00940000160404	ENSGT00940000160570	ENSGT00940000153246.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.k
Burton s mouthbrooder	MODERN SPECIES	550						ENSHBUG00000011138	tncb (ENSHBUG00000011114)	pomt1 (ENSHBUG00000011067)	ENSHBUG00000010998	CARD9 (ENSHBUG00000010978)	ENSHBUG00000010972	ENSHBUG00000010957	nsmfb (ENSHBUG00000010901)	ENSHBUG00000010856	lman2lb (ENSHBUG00000010848)	ENSHBUG00000010837 #22	tm2d2 (ENSHBUG00000010783)	ENSHBUG00000010763	ENSHBUG00000010718
Haplochromini_A	ANCESTRAL SPECIES	75	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a.c	ENSGT00940000156621.e.a.d.b	ENSGT00940000155188.B.b	ENSGT00940000158049	ENSGT00940000160404	ENSGT00940000160570	ENSGT00940000153246.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.k
Haplochromini_B	ANCESTRAL SPECIES	92	ENSGT00940000159669.a	ENSGT00940000159633	ENSGT00940000153231.A	ENSGT00390000016002.o.a	ENSGT00940000156621.e.a.c	ENSGT00940000155188.B.b	ENSGT00940000158049	ENSGT00940000160404	ENSGT00940000160570	ENSGT00940000153246.b	ENSGT00940000164876.a	ENSGT00940000164721.a	ENSGT00390000000459.c	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b.k
Eastern happy	MODERN SPECIES	3	imp4 (ENSACLG00000006695)	RABL6 (ENSACLG00000006704)	ENSACLG00000006707	TRAF2 (ENSACLG00000006712)	ENSACLG00000006730	tncb (ENSACLG00000006752)	pomt1 (ENSACLG00000007029)	snapc4 (ENSACLG00000007077)	ENSACLG00000007092	ENSACLG00000007094	ENSACLG00000007122	ENSACLG00000007164	nsmfb (ENSACLG00000007216)	ENSACLG00000007304	lman2lb (ENSACLG00000007784)	ENSACLG00000007800 #22	tm2d2 (ENSACLG00000007809)	ENSACLG00000007816	ENSACLG00000007824	ENSACLG00000007874	ENSACLG00000007878	ENSACLG00000007883	ENSACLG00000008147	ENSACLG00000008155	ENSACLG00000008185	ENSACLG00000008725	ENSACLG00000008726	mthfd2l (ENSACLG00000008731)	slc20a2 (ENSACLG00000008750)	KCMF1 (ENSACLG00000008781)	lipg (ENSACLG00000008808)
Zebra mbuna	MODERN SPECIES	1094	zgc:64051 (ENSMZEG00005003993)	araf (ENSMZEG00005003981)	imp4 (ENSMZEG00005003966)	RABL6 (ENSMZEG00005003942)	TRAF2 (ENSMZEG00005003895)	tncb (ENSMZEG00005003820)	pomt1 (ENSMZEG00005003751)	snapc4 (ENSMZEG00005003547)	CARD9 (ENSMZEG00005003518)	ENSMZEG00005003513	ENSMZEG00005003487	nsmfb (ENSMZEG00005003444)	ENSMZEG00005003412	ENSMZEG00005003406	lman2lb (ENSMZEG00005003388)	ENSMZEG00005003343 #22	tm2d2 (ENSMZEG00005003319)	ENSMZEG00005003288	ENSMZEG00005003139	ENSMZEG00005003095	vamp5 (ENSMZEG00005003085)	GCN1 (ENSMZEG00005002952)	rab35b (ENSMZEG00005002918)	BICDL1 (ENSMZEG00005002886)	CIT (ENSMZEG00005002785)	mtmr3 (ENSMZEG00005002720)	CUX2 (ENSMZEG00005002664)	ENSMZEG00005002643	myl2b (ENSMZEG00005002627)	PPP1CA (ENSMZEG00005002592)	ENSMZEG00005002573
P. nyererei	MODERN SPECIES	462	dph7 (ENSPNYG00000019652)	PNPLA7 (ENSPNYG00000019575)	zgc:64051 (ENSPNYG00000019560)	araf (ENSPNYG00000019508)	imp4 (ENSPNYG00000019489)	RABL6 (ENSPNYG00000019458)	ENSPNYG00000019450	ENSPNYG00000019438	tncb (ENSPNYG00000019203)	pomt1 (ENSPNYG00000019095)	ENSPNYG00000019072	ENSPNYG00000019054	ENSPNYG00000019013	nsmfb (ENSPNYG00000018932)	lman2lb (ENSPNYG00000018901)	ENSPNYG00000018864 #22	tm2d2 (ENSPNYG00000018846)	ENSPNYG00000018797	ENSPNYG00000018752
Nile tilapia	MODERN SPECIES	3	zgc:64051 (ENSONIG00000010427)	araf (ENSONIG00000010417)	imp4 (ENSONIG00000010414)	ENSONIG00000038832	RABL6 (ENSONIG00000010408)	TRAF2 (ENSONIG00000010405)	tncb (ENSONIG00000011931)	pomt1 (ENSONIG00000011936)	snapc4 (ENSONIG00000011941)	ENSONIG00000011944	ENSONIG00000011947	ENSONIG00000011948	nsmfb (ENSONIG00000011951)	ENSONIG00000011954	lman2lb (ENSONIG00000011956)	ENSONIG00000011959 #22	tm2d2 (ENSONIG00000039000)	ENSONIG00000011960	ENSONIG00000036645	ENSONIG00000029519	ENSONIG00000028641	ENSONIG00000031873	WHRN (ENSONIG00000031031)	noxa1 (ENSONIG00000020211)	dpp7 (ENSONIG00000020212)	ENSONIG00000032953	ppp6c (ENSONIG00000011254)	golga1 (ENSONIG00000020214)	rpl35 (ENSONIG00000034874)	ENSONIG00000041333	olfml2a (ENSONIG00000020216)
Midas cichlid	MODERN SPECIES	439	mrpl41 (ENSACIG00000010909)	PNPLA7 (ENSACIG00000010839)	zgc:64051 (ENSACIG00000010813)	araf (ENSACIG00000010783)	imp4 (ENSACIG00000010761)	RABL6 (ENSACIG00000010721)	TRAF2 (ENSACIG00000010693)	tncb (ENSACIG00000010489)	pomt1 (ENSACIG00000010429)	ENSACIG00000010386	ENSACIG00000010368	ENSACIG00000010358	ENSACIG00000010343	nsmfb (ENSACIG00000010301)	lman2lb (ENSACIG00000010276)	ENSACIG00000010255 #22	tm2d2 (ENSACIG00000010238)	ENSACIG00000010021	ENSACIG00000009988
Protacanthopterygii	ANCESTRAL SPECIES	93		ENSGT00390000013158	ENSGT00940000156763.b.b	ENSGT01010000224027	ENSGT00390000000459.c	ENSGT00940000164721.a	ENSGT00940000164876.a	ENSGT00940000155188.B.b	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00390000000134.b.a	ENSGT00940000159875	ENSGT00940000156888	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302.c	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a	ENSGT00940000164419
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	37	ENSGT00940000160266.i	ENSGT00390000013158.f	ENSGT00940000156763.b.b.e	ENSGT01010000224027	ENSGT00390000000459.c.e	ENSGT00940000164721.a.e	ENSGT00940000164876.a	ENSGT00940000155188.B.b.f	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a.w	ENSGT00940000153231.A.f	ENSGT00940000159633.q	ENSGT00940000159669.a.d	ENSGT00940000159669.b	ENSGT00940000155596.q.g	ENSGT00940000158066.o.a #22	ENSGT00730000111181.f	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h.c	ENSGT00940000165531.b.a.f	ENSGT00950000183197.b.a.a.f	ENSGT00940000155874.a.g	ENSGT00390000000134.b.a.a	ENSGT00940000159875.c	ENSGT00940000156888.e	ENSGT00390000003458.f	ENSGT00940000156716.db	ENSGT00940000166302.c.a	ENSGT00950000183012.A.a.c.b.c	ENSGT00940000155431.a.c	ENSGT00940000164419.e
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000160266.i	ENSGT00390000013158.f	ENSGT00940000156763.b.b.e	ENSGT01010000224027	ENSGT00390000000459.c.e	ENSGT00940000164721.a.e	ENSGT00940000164876.a	ENSGT00940000155188.B.b.f	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a.w	ENSGT00940000153231.A.f	ENSGT00940000159633.q	ENSGT00940000159669.a.d	ENSGT00940000159669.b	ENSGT00940000155596.q.g	ENSGT00940000158066.o.a #22	ENSGT00730000111181.f	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h.c	ENSGT00940000165531.b.a.f	ENSGT00950000183197.b.a.a.f	ENSGT00940000155874.a.g	ENSGT00390000000134.b.a.a	ENSGT00940000159875.c	ENSGT00940000156888.e	ENSGT00390000003458.f	ENSGT00940000156716.db	ENSGT00940000166302.c.a	ENSGT00950000183012.A.a.c.b.c	ENSGT00940000155431.a.c	ENSGT00940000164419.e
Salmo	ANCESTRAL SPECIES		ENSGT00940000161328	ENSGT00940000160266.i	ENSGT00390000013158.f	ENSGT00940000156763.b.b.e	ENSGT00390000000459.c.e	ENSGT00940000164721.a.e	ENSGT00940000164876.a	ENSGT00940000155188.B.b.f	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a.w	ENSGT00940000153231.A.f	ENSGT00940000159633.q	ENSGT00940000159669.a.d	ENSGT00940000159669.b	ENSGT00940000155596.q.g	ENSGT00940000158066.o.a #22	ENSGT00730000111181.f	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h.c	ENSGT00940000165531.b.a.f	ENSGT00950000183197.b.a.a.f	ENSGT00940000155874.a.g	ENSGT00390000000134.b.a.a	ENSGT00940000159875.c	ENSGT00940000156888.e	ENSGT00390000003458.f	ENSGT00940000156716.db	ENSGT00940000166302.c.a	ENSGT00950000183012.A.a.c.b.c	ENSGT00940000155431.a.c	ENSGT00940000164419.e
Atlantic salmon	MODERN SPECIES	16	DHB3 (ENSSSAG00000068439)	RM41 (ENSSSAG00000068453)	ENSSSAG00000068507	ENSSSAG00000116094	nsmfb (ENSSSAG00000069217)	ENSSSAG00000069221	ENSSSAG00000069226	tncb (ENSSSAG00000069292)	ENSSSAG00000070573	ENSSSAG00000090393	ENSSSAG00000071354	imp4 (ENSSSAG00000071363)	araf (ENSSSAG00000008477)	ENSSSAG00000071444	lman2lb (ENSSSAG00000071456)	ENSSSAG00000097240 #22	tm2d2 (ENSSSAG00000083017)	ENSSSAG00000071502	ENSSSAG00000071587	hdr (ENSSSAG00000085667)	cyb561a3a (ENSSSAG00000073084)	loxl2b (ENSSSAG00000073121)	GOLGA7 (ENSSSAG00000105336)	sfrp1a (ENSSSAG00000074486)	ZMAT4 (ENSSSAG00000074490)	tcima (ENSSSAG00000093836)	adam28 (ENSSSAG00000074523)	ppp3cca (ENSSSAG00000075817)	vps37ba (ENSSSAG00000089977)	abcb9 (ENSSSAG00000080327)	zgc:113436 (ENSSSAG00000092467)
River trout	MODERN SPECIES	19	hsd17b3 (ENSSTUG00000004775)	PNPLA7 (ENSSTUG00000004952)	mrpl41 (ENSSTUG00000008788)	nsmfb (ENSSTUG00000008796)	ENSSTUG00000008805	ENSSTUG00000008838	tncb (ENSSTUG00000008917)	TRAF2 (ENSSTUG00000011600)	rpl8 (ENSSTUG00000011976)	RABL6 (ENSSTUG00000011997)	imp4 (ENSSTUG00000012034)	araf (ENSSTUG00000012067)	zgc:64051 (ENSSTUG00000012353)	ENSSTUG00000012375	lman2lb (ENSSTUG00000012383)	ENSSTUG00000012418 #22	tm2d2 (ENSSTUG00000012437)	ENSSTUG00000012455	UNC5D (ENSSTUG00000012557)	hdr (ENSSTUG00000014186)	ENSSTUG00000014202	loxl2b (ENSSTUG00000014246)	GOLGA7 (ENSSTUG00000015352)	sfrp1a (ENSSTUG00000015365)	ZMAT4 (ENSSTUG00000015370)	tcima (ENSSTUG00000015378)	adam28 (ENSSTUG00000015402)	ppp3cca (ENSSTUG00000016692)	vps37ba (ENSSTUG00000017161)	abcb9 (ENSSTUG00000017190)	zgc:113436 (ENSSTUG00000017444)
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00940000161328	ENSGT00940000160266.i	ENSGT00390000013158.f	ENSGT00940000156763.b.b.e	ENSGT01010000224027	ENSGT00390000000459.c.e	ENSGT00940000164721.a.e	ENSGT00940000164876.a	ENSGT00940000155188.B.b.f	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a.w	ENSGT00940000153231.A.f	ENSGT00940000159633.q	ENSGT00940000159669.b	ENSGT00940000155596.q.g	ENSGT00940000158066.o.a #22	ENSGT00730000111181.f	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h.c	ENSGT00940000165531.b.a.f	ENSGT01000000220351	ENSGT00940000155874.a.g	ENSGT00390000000134.b.a.a	ENSGT00940000159875.c	ENSGT00940000156888.e	ENSGT00390000003458.f	ENSGT00940000156716.db	ENSGT00940000166302.c.a	ENSGT00950000183012.A.a.c.b.c	ENSGT00940000155431.a.c	ENSGT00940000164419.e
Rainbow trout	MODERN SPECIES	27	hsd17b3 (ENSOMYG00000024401)	MRPL41 (ENSOMYG00000024394)	ENSOMYG00000023357	ENSOMYG00000022925	nsmfb (ENSOMYG00000022858)	ENSOMYG00000022807	ENSOMYG00000048615	tncb (ENSOMYG00000021072)	ENSOMYG00000020606	ENSOMYG00000020549	imp4 (ENSOMYG00000020506)	araf (ENSOMYG00000020464)	cd53 (ENSOMYG00000020432)	ENSOMYG00000061360	lman2lb (ENSOMYG00000020388)	ENSOMYG00000020380 #22	tm2d2 (ENSOMYG00000020349)	ENSOMYG00000020341	ENSOMYG00000076087	ENSOMYG00000062287	ENSOMYG00000051389	ENSOMYG00000019631	ENSOMYG00000053069	hdr (ENSOMYG00000019473)	ENSOMYG00000019452	loxl2b (ENSOMYG00000017705)	GOLGA7 (ENSOMYG00000017473)	sfrp1a (ENSOMYG00000017455)	ZMAT4 (ENSOMYG00000017439)	tcima (ENSOMYG00000017435)	adam28 (ENSOMYG00000016749)
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000161328	ENSGT00940000160266.i	ENSGT00390000013158.f	ENSGT00940000156763.b.b.e	ENSGT00390000000459.c.e	ENSGT00940000164721.a.e	ENSGT00940000164876.a	ENSGT00940000155188.B.b.f	ENSGT00940000156621.e.a	ENSGT00390000016002.o.a.w	ENSGT00940000153231.A.f	ENSGT00940000159633.q	ENSGT00940000159669.a.d	ENSGT00940000159669.b	ENSGT00940000155596.q.g	ENSGT00940000158066.o.a #22	ENSGT00730000111181.f	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h.c	ENSGT00940000165531.b.a.f	ENSGT01000000220351	ENSGT00940000155874.a.g	ENSGT00390000000134.b.a.a	ENSGT00940000159875.c	ENSGT00940000156888.e	ENSGT00390000003458.f	ENSGT00940000156716.db	ENSGT00940000166302.c.a	ENSGT00950000183012.A.a.c.b.c	ENSGT00940000155431.a.c	ENSGT00940000164419.e
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	28	ercc6l2 (ENSOTSG00005034944)	hsd17b3 (ENSOTSG00005034939)	mrpl41 (ENSOTSG00005034938)	ENSOTSG00005034823	nsmfb (ENSOTSG00005034819)	ENSOTSG00005034817	ENSOTSG00005034816	tncb (ENSOTSG00005034079)	TRAF2 (ENSOTSG00005033934)	RABL6 (ENSOTSG00005033932)	imp4 (ENSOTSG00005033923)	araf (ENSOTSG00005033919)	ENSOTSG00005033918	ENSOTSG00005033915	lman2lb (ENSOTSG00005033914)	ENSOTSG00005033912 #22	tm2d2 (ENSOTSG00005033910)	ENSOTSG00005033909	UNC5D (ENSOTSG00005033580)	hdr (ENSOTSG00005033577)	ENSOTSG00005033576	ENSOTSG00005033575	loxl2b (ENSOTSG00005031575)	GOLGA7 (ENSOTSG00005031571)	sfrp1a (ENSOTSG00005031570)	ZMAT4 (ENSOTSG00005031568)	tcima (ENSOTSG00005031567)	adam28 (ENSOTSG00005031165)	ppp3cca (ENSOTSG00005026816)	vps37ba (ENSOTSG00005026807)	abcb9 (ENSOTSG00005026774)
Chinook salmon	MODERN SPECIES	28	mrpl41 (ENSOTSG00005029250)	ENSOTSG00005029166	nsmfb (ENSOTSG00005029160)	ENSOTSG00005029159	ENSOTSG00005029158	ENSOTSG00005029156	tncb (ENSOTSG00005028575)	TRAF2 (ENSOTSG00005028393)	RABL6 (ENSOTSG00005028390)	imp4 (ENSOTSG00005028389)	araf (ENSOTSG00005028382)	zgc:64051 (ENSOTSG00005028377)	ENSOTSG00005028376	ENSOTSG00005028375	lman2lb (ENSOTSG00005028369)	ENSOTSG00005028367 #22	tm2d2 (ENSOTSG00005028366)	ENSOTSG00005028363	UNC5D (ENSOTSG00005028332)	hdr (ENSOTSG00005028331)	ENSOTSG00005028329	loxl2b (ENSOTSG00005027818)	GOLGA7 (ENSOTSG00005027810)	sfrp1a (ENSOTSG00005027739)	ZMAT4 (ENSOTSG00005027697)	tcima (ENSOTSG00005046492)	adam28 (ENSOTSG00005046461)	ppp3cca (ENSOTSG00005046045)	vps37ba (ENSOTSG00005046044)	abcb9 (ENSOTSG00005045675)	zgc:113436 (ENSOTSG00005045674)
Coho salmon	MODERN SPECIES	22	PTCH1 (ENSOKIG00005017718)	ercc6l2 (ENSOKIG00005017634)	hsd17b3 (ENSOKIG00005017561)	mrpl41 (ENSOKIG00005017546)	PNPLA7 (ENSOKIG00005014858)	nsmfb (ENSOKIG00005014665)	ENSOKIG00005014624	tncb (ENSOKIG00005014123)	TRAF2 (ENSOKIG00005013883)	RABL6 (ENSOKIG00005013833)	imp4 (ENSOKIG00005013798)	araf (ENSOKIG00005013737)	zgc:64051 (ENSOKIG00005013712)	ENSOKIG00005013706	lman2lb (ENSOKIG00005013677)	ENSOKIG00005013664 #22	tm2d2 (ENSOKIG00005013633)	ENSOKIG00005013628	UNC5D (ENSOKIG00005012908)	hdr (ENSOKIG00005012867)	ENSOKIG00005012851	loxl2b (ENSOKIG00005012632)	GOLGA7 (ENSOKIG00005012585)	sfrp1a (ENSOKIG00005012572)	ZMAT4 (ENSOKIG00005012557)	tcima (ENSOKIG00005012552)	adam28 (ENSOKIG00005008179)	ppp3cca (ENSOKIG00005007503)	vps37ba (ENSOKIG00005007457)	abcb9 (ENSOKIG00005006573)	zgc:113436 (ENSOKIG00005006505)
Huchen	MODERN SPECIES	244	hsd17b3 (ENSHHUG00000047463)	mrpl41 (ENSHHUG00000047469)	PNPLA7 (ENSHHUG00000047474)	ENSHHUG00000047541	nsmfb (ENSHHUG00000047543)	ENSHHUG00000047548	ENSHHUG00000047577	tncb (ENSHHUG00000047580)	TRAF2 (ENSHHUG00000047682)	RABL6 (ENSHHUG00000047694)	imp4 (ENSHHUG00000047707)	araf (ENSHHUG00000047711)	zgc:64051 (ENSHHUG00000047759)	ENSHHUG00000047784	lman2lb (ENSHHUG00000047788)	ENSHHUG00000047838 #22	tm2d2 (ENSHHUG00000047849)	ENSHHUG00000047855
Salmoninae	ANCESTRAL SPECIES	188							ENSGT00940000153116.C.a	ENSGT00390000000459.c.f	ENSGT00940000164721.a.f	ENSGT00940000155188.B.b.e	ENSGT00390000016002.o.a.x	ENSGT00940000153231.A.e	ENSGT00940000159633.r	ENSGT00940000159669.a.c	ENSGT00940000155596.q.h	ENSGT00940000158066.o.b #22	ENSGT00730000111181.e	ENSGT00950000182815.a.a.b.h.d	ENSGT00940000165531.b.a.e	ENSGT00950000183197.b.a.a.e	ENSGT00940000155874.a.h	ENSGT00390000000134.b.a.b	ENSGT00940000159875.d	ENSGT00940000156888.f	ENSGT00390000003458.e	ENSGT00940000156716.eb	ENSGT00940000166302.c.b	ENSGT00950000183012.A.a.c.b.d	ENSGT00940000155431.a.d	ENSGT00940000164419.f	ENSGT00940000153974.B.h
Huchen	MODERN SPECIES	1126								ENSHHUG00000020506	tncb (ENSHHUG00000020200)	RABL6 (ENSHHUG00000020186)	imp4 (ENSHHUG00000020156)	araf (ENSHHUG00000020067)	zgc:64051 (ENSHHUG00000020047)	ENSHHUG00000020037	lman2lb (ENSHHUG00000019991)	ENSHHUG00000019872 #22	tm2d2 (ENSHHUG00000019845)
Salmoninae_a	ANCESTRAL SPECIES	31	ENSGT00640000091523	ENSGT00940000155876.jb	ENSGT00940000159011.k.b	ENSGT00940000160266.j	ENSGT00390000013158.e	ENSGT00940000156763.b.b.f	ENSGT00940000153116.C.a	ENSGT00390000000459.c.f	ENSGT00940000164721.a.f	ENSGT00940000155188.B.b.e	ENSGT00390000016002.o.a.x	ENSGT00940000153231.A.e	ENSGT00940000159633.r	ENSGT00940000159669.a.c	ENSGT00940000155596.q.h	ENSGT00940000158066.o.b #22	ENSGT00730000111181.e	ENSGT00950000182815.a.a.b.h.d	ENSGT00940000165531.b.a.e	ENSGT00950000183197.b.a.a.e	ENSGT00940000155874.a.h	ENSGT00390000000134.b.a.b	ENSGT00940000159875.d	ENSGT00940000156888.f	ENSGT00390000003458.e	ENSGT00940000156716.eb	ENSGT00940000166302.c.b	ENSGT00950000183012.A.a.c.b.d	ENSGT00940000155431.a.d	ENSGT00940000164419.f	ENSGT00940000153974.B.h
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT00640000091523	ENSGT00940000155876.jb.a	ENSGT00940000159011.k.b	ENSGT00940000160266.j	ENSGT00390000013158.e	ENSGT00940000156763.b.b.f	ENSGT00940000153116.C.a	ENSGT00390000000459.c.f	ENSGT00940000164721.a.f	ENSGT00940000155188.B.b.e	ENSGT00390000016002.o.a.x	ENSGT00940000153231.A.e	ENSGT00940000159633.r	ENSGT00940000159669.a.c	ENSGT00940000155596.q.h	ENSGT00940000158066.o.b #22	ENSGT00730000111181.e	ENSGT00950000182815.a.a.b.h.d	ENSGT00940000165531.b.a.e	ENSGT00950000183197.b.a.a.e	ENSGT00940000155874.a.h	ENSGT00390000000134.b.a.b	ENSGT00940000159875.d	ENSGT00940000156888.f	ENSGT00390000003458.e	ENSGT00940000156716.eb	ENSGT00940000166302.c.b	ENSGT00950000183012.A.a.c.b.d	ENSGT00940000155431.a.d	ENSGT00940000164419.f	ENSGT00940000153974.B.h
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000062134	ENSOMYG00000008349	ENSOMYG00000003400	ENSOMYG00000003171	MRPL41 (ENSOMYG00000044228)	ENSOMYG00000044205	ENSOMYG00000044195	NSMF (ENSOMYG00000044194)	ENSOMYG00000044189	ENSOMYG00000042447	ENSOMYG00000042254	imp4 (ENSOMYG00000042234)	araf (ENSOMYG00000041997)	zgc:64051 (ENSOMYG00000041908)	lman2lb (ENSOMYG00000041948)	ENSOMYG00000041923 #22	tm2d2 (ENSOMYG00000051659)	ENSOMYG00000041212	ENSOMYG00000056901	hdr (ENSOMYG00000041128)	ENSOMYG00000069082	cyb561a3a (ENSOMYG00000041125)	loxl2b (ENSOMYG00000041020)	sfrp1a (ENSOMYG00000040981)	ENSOMYG00000053915	ENSOMYG00000040973	tcima (ENSOMYG00000040971)	adam28 (ENSOMYG00000040395)	ppp3cca (ENSOMYG00000039597)	ENSOMYG00000053106	ENSOMYG00000072942
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT00640000091523	ENSGT00940000155876.jb.a	ENSGT00940000159011.k.b	ENSGT00940000160266.j	ENSGT00390000013158.e	ENSGT00940000156763.b.b.f	ENSGT00940000153116.C.a	ENSGT00390000000459.c.f	ENSGT00940000164721.a.f	ENSGT00940000155188.B.b.e	ENSGT00390000016002.o.a.x	ENSGT00940000153231.A.e	ENSGT00940000159633.r	ENSGT00940000159669.a.c	ENSGT00940000155596.q.h	ENSGT00940000158066.o.b #22	ENSGT00730000111181.e	ENSGT00950000182815.a.a.b.h.d	ENSGT00940000165531.b.a.e	ENSGT00950000183197.b.a.a.e	ENSGT00940000155874.a.h	ENSGT00390000000134.b.a.b	ENSGT00940000159875.d	ENSGT00940000156888.f	ENSGT00390000003458.e	ENSGT00940000156716.eb	ENSGT00940000166302.c.b	ENSGT00950000183012.A.a.c.b.d	ENSGT00940000155431.a.d	ENSGT00940000164419.f	ENSGT00940000153974.B.h
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	3	ENSOTSG00005029104	PTCH1 (ENSOTSG00005029113)	ENSOTSG00005029193	hsd17b3 (ENSOTSG00005029195)	mrpl41 (ENSOTSG00005029201)	ENSOTSG00005029219	ENSOTSG00005029235	nsmfb (ENSOTSG00005029236)	ENSOTSG00005029238	tncb (ENSOTSG00005029320)	RABL6 (ENSOTSG00005037947)	imp4 (ENSOTSG00005037950)	araf (ENSOTSG00005037955)	zgc:64051 (ENSOTSG00005038199)	lman2lb (ENSOTSG00005038200)	ENSOTSG00005038201 #22	tm2d2 (ENSOTSG00005038202)	UNC5D (ENSOTSG00005038211)	hdr (ENSOTSG00005040908)	cyb561a3a (ENSOTSG00005040910)	loxl2b (ENSOTSG00005040921)	GOLGA7 (ENSOTSG00005041111)	sfrp1a (ENSOTSG00005041113)	ZMAT4 (ENSOTSG00005041114)	tcima (ENSOTSG00005041116)	adam28 (ENSOTSG00005041117)	ppp3cca (ENSOTSG00005041207)	vps37ba (ENSOTSG00005045126)	abcb9 (ENSOTSG00005045127)	zgc:113436 (ENSOTSG00005045128)	ogfod2 (ENSOTSG00005045129)
Chinook salmon	MODERN SPECIES	4	trip12 (ENSOTSG00005007162)	dner (ENSOTSG00005024034)	ENSOTSG00005024035	hsd17b3 (ENSOTSG00005024039)	mrpl41 (ENSOTSG00005024044)	ENSOTSG00005024077	ENSOTSG00005030594	nsmfb (ENSOTSG00005030598)	ENSOTSG00005030600	tncb (ENSOTSG00005030642)	RABL6 (ENSOTSG00005040152)	imp4 (ENSOTSG00005040153)	araf (ENSOTSG00005040154)	zgc:64051 (ENSOTSG00005040383)	lman2lb (ENSOTSG00005040388)	ENSOTSG00005040393 #22	tm2d2 (ENSOTSG00005040394)	UNC5D (ENSOTSG00005040398)	hdr (ENSOTSG00005040430)	cyb561a3a (ENSOTSG00005040431)	loxl2b (ENSOTSG00005040434)	sfrp1a (ENSOTSG00005041275)	ZMAT4 (ENSOTSG00005041276)	tcima (ENSOTSG00005041277)	adam28 (ENSOTSG00005041281)	ppp3cca (ENSOTSG00005041341)	vps37ba (ENSOTSG00005045148)	abcb9 (ENSOTSG00005045149)	zgc:113436 (ENSOTSG00005045151)	ogfod2 (ENSOTSG00005045152)	SLC4A5 (ENSOTSG00005045153)
Coho salmon	MODERN SPECIES	28	ENSOKIG00005045549	PTCH1 (ENSOKIG00005045591)	ENSOKIG00005045747	MRPL41 (ENSOKIG00005045842)	ENSOKIG00005045876	ENSOKIG00005046002	NSMF (ENSOKIG00005046011)	ENSOKIG00005046019	ENSOKIG00005046165	ENSOKIG00005047085	RABL6 (ENSOKIG00005047092)	imp4 (ENSOKIG00005047098)	araf (ENSOKIG00005047114)	zgc:64051 (ENSOKIG00005047173)	lman2lb (ENSOKIG00005047193)	ENSOKIG00005047262 #22	tm2d2 (ENSOKIG00005001742)	ENSOKIG00005001752	UNC5D (ENSOKIG00005001881)	hdr (ENSOKIG00005002476)	cyb561a3a (ENSOKIG00005002488)	loxl2b (ENSOKIG00005002528)	sfrp1a (ENSOKIG00005002663)	ZMAT4 (ENSOKIG00005002679)	tcima (ENSOKIG00005002685)	adam28 (ENSOKIG00005002748)	ppp3cca (ENSOKIG00005003172)	vps37ba (ENSOKIG00005003297)	abcb9 (ENSOKIG00005003311)	zgc:113436 (ENSOKIG00005003408)	SLC4A5 (ENSOKIG00005003582)
Salmo	ANCESTRAL SPECIES	19	ENSGT00640000091523	ENSGT00940000155876.jb	ENSGT00940000159011.k.b	ENSGT00940000160266.j	ENSGT00390000013158.e	ENSGT00940000156763.b.b.f	ENSGT00940000153116.C.a	ENSGT00390000000459.c.f	ENSGT00940000164721.a.f	ENSGT00940000155188.B.b.e	ENSGT00390000016002.o.a.x	ENSGT00940000153231.A.e	ENSGT00940000159633.r	ENSGT00940000159669.a.c	ENSGT00940000155596.q.h	ENSGT00940000158066.o.b #22	ENSGT00730000111181.e	ENSGT00950000182815.a.a.b.h.d	ENSGT00940000165531.b.a.e	ENSGT00950000183197.b.a.a.e	ENSGT00940000155874.a.h	ENSGT00390000000134.b.a.b	ENSGT00940000159875.d	ENSGT00940000156888.f	ENSGT00390000003458.e	ENSGT00940000156716.eb	ENSGT00940000166302.c.b	ENSGT00950000183012.A.a.c.b.d	ENSGT00940000155431.a.d	ENSGT00940000164419.f	ENSGT00940000153974.B.h
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000067498	ENSSSAG00000054296	ENSSSAG00000108347	ENSSSAG00000054053	MRPL41 (ENSSSAG00000087739)	ENSSSAG00000053645	ENSSSAG00000053596	NSMF (ENSSSAG00000053560)	ENSSSAG00000109823	ENSSSAG00000018238	ENSSSAG00000015774	imp4 (ENSSSAG00000015727)	araf (ENSSSAG00000071383)	zgc:64051 (ENSSSAG00000008396)	lman2lb (ENSSSAG00000008372)	ENSSSAG00000008361 #22	tm2d2 (ENSSSAG00000008352)	ENSSSAG00000007492	hdr (ENSSSAG00000084117)	cyb561a3a (ENSSSAG00000007441)	loxl2b (ENSSSAG00000006368)	GOLGA7 (ENSSSAG00000006229)	sfrp1a (ENSSSAG00000006176)	ZMAT4 (ENSSSAG00000006161)	tcima (ENSSSAG00000106467)	adam28 (ENSSSAG00000080414)	ENSSSAG00000108559	ENSSSAG00000109903	ppp3cca (ENSSSAG00000080349)	vp37b (ENSSSAG00000084172)	abcb9 (ENSSSAG00000078384)
River trout	MODERN SPECIES	39	PTCH1 (ENSSTUG00000012394)	ENSSTUG00000012341	ENSSTUG00000012335	hsd17b3 (ENSSTUG00000012297)	mrpl41 (ENSSTUG00000012291)	ENSSTUG00000008645	ENSSTUG00000008577	nsmfb (ENSSTUG00000008562)	ENSSTUG00000008540	tncb (ENSSTUG00000005495)	RABL6 (ENSSTUG00000005344)	imp4 (ENSSTUG00000005326)	araf (ENSSTUG00000005167)	zgc:64051 (ENSSTUG00000005134)	lman2lb (ENSSTUG00000005059)	ENSSTUG00000004988 #22	tm2d2 (ENSSTUG00000004976)	ENSSTUG00000004972	UNC5D (ENSSTUG00000003878)	hdr (ENSSTUG00000003823)	cyb561a3a (ENSSTUG00000003805)	loxl2b (ENSSTUG00000002637)	GOLGA7 (ENSSTUG00000002564)	sfrp1a (ENSSTUG00000002554)	ZMAT4 (ENSSTUG00000002546)	tcima (ENSSTUG00000002543)	adam28 (ENSSTUG00000002143)	ppp3cca (ENSSTUG00000001771)	vps37ba (ENSSTUG00000001734)	abcb9 (ENSSTUG00000001665)	zgc:113436 (ENSSTUG00000001655)
Northern pike	MODERN SPECIES	12	PNPLA7 (ENSELUG00000004035)	ENSELUG00000004056	nsmfb (ENSELUG00000004102)	ENSELUG00000004159	ENSELUG00000004183	tncb (ENSELUG00000004262)	ENSELUG00000027576	TRAF2 (ENSELUG00000004384)	ENSELUG00000033195	RABL6 (ENSELUG00000004448)	imp4 (ENSELUG00000004487)	araf (ENSELUG00000004516)	cd53 (ENSELUG00000004637)	ENSELUG00000004666	lman2lb (ENSELUG00000004713)	ENSELUG00000004782 #22	tm2d2 (ENSELUG00000004828)	ENSELUG00000004850	ENSELUG00000030461	UNC5D (ENSELUG00000004904)	hdr (ENSELUG00000004929)	ENSELUG00000004940	cyb561a3a (ENSELUG00000004953)	loxl2b (ENSELUG00000004975)	GOLGA7 (ENSELUG00000005025)	sfrp1a (ENSELUG00000005064)	ZMAT4 (ENSELUG00000005097)	ppp3cca (ENSELUG00000005227)	adam28 (ENSELUG00000005155)	vps37ba (ENSELUG00000005261)	abcb9 (ENSELUG00000005281)
Otomorpha	ANCESTRAL SPECIES	97									ENSGT00390000016002.o.a	ENSGT00770000121827	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00940000155874.a	ENSGT00940000175215.a.b	ENSGT00390000003458	ENSGT00940000153974.B	ENSGT00940000157488.g	ENSGT00940000165233	ENSGT00940000153745.a.a	ENSGT00390000004149	ENSGT00940000160325.b	ENSGT00730000111371
Otophysi	ANCESTRAL SPECIES	94	ENSGT00390000013711	ENSGT00940000154191.k.a	ENSGT00940000154849.b	ENSGT00940000155991	ENSGT00940000165465	ENSGT00940000157987	ENSGT00730000112955	ENSGT00390000005772	ENSGT00530000063370.b	ENSGT00390000016002.o.a	ENSGT00770000121827	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00950000183089.c.b	ENSGT00940000155874.a	ENSGT00940000175215.a.b	ENSGT00390000003458	ENSGT00940000153974.B	ENSGT00940000157488.g	ENSGT00940000165233	ENSGT00940000153745.a.a	ENSGT00390000004149	ENSGT00940000160325.b
Characiphysae	ANCESTRAL SPECIES	141	ENSGT00530000063811.B.a	ENSGT00940000158615	ENSGT00940000155182.b	ENSGT01070000253909	ENSGT00940000156383.b.c	ENSGT00950000182928.A.b	ENSGT00940000164250	ENSGT00940000156871.o	ENSGT00390000018351	ENSGT00940000162007	ENSGT00940000161539	ENSGT00550000075075	ENSGT00940000159633.l	ENSGT00940000159669.a	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00390000013867.bc.a.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT01060000248528.b.l	ENSGT00950000183089.c.b	ENSGT00940000155874.a	ENSGT00940000159875	ENSGT00940000156888.c.a	ENSGT00940000156888.d	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000154115.d
Channel catfish	MODERN SPECIES	14	gda (ENSIPUG00000021777)	c22h9orf85 (ENSIPUG00000021788)	abhd17b (ENSIPUG00000021793)	tmem2 (ENSIPUG00000021806)	TRPM3 (ENSIPUG00000021867)	klf9 (ENSIPUG00000021891)	fam219ab (ENSIPUG00000021897)	ENSIPUG00000021906	ENSIPUG00000021910	ela3l (ENSIPUG00000021915)	pxmp2 (ENSIPUG00000021933)	usp30 (ENSIPUG00000021944)	araf (ENSIPUG00000021951)	zgc:64051 (ENSIPUG00000022000)	lman2lb (ENSIPUG00000022004)	ENSIPUG00000022015 #22	tm2d2 (ENSIPUG00000022019)	htra4 (ENSIPUG00000022028)	ENSIPUG00000022036	ENSIPUG00000022039	ENSIPUG00000022047	unc5d (ENSIPUG00000022086)	hdr (ENSIPUG00000022162)	cyb561a3 (ENSIPUG00000022173)	ENSIPUG00000022189	histh1l1 (ENSIPUG00000022196)	loxl2b (ENSIPUG00000022206)	sfrp1 (ENSIPUG00000022229)	zmat4 (ENSIPUG00000022248)	c22h8orf4 (ENSIPUG00000022272)	ENSIPUG00000022280
Characiphysae_b	ANCESTRAL SPECIES	138	ENSGT00530000063811.B.a	ENSGT00940000158615	ENSGT00940000155182.b	ENSGT01070000253909	ENSGT00940000156383.b.c	ENSGT00950000182928.A.b	ENSGT00940000164250	ENSGT00940000156871.o	ENSGT00390000018351	ENSGT00940000162007	ENSGT00940000161539	ENSGT00550000075075	ENSGT00940000159633.l	ENSGT00940000159669.a	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00390000013867.bc.a.a	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT01060000248528.b.l	ENSGT01100000263506.a.d	ENSGT00950000183089.c.b	ENSGT00940000155874.a	ENSGT00940000159875	ENSGT00940000156888.d	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000154115.d
Characoidei	ANCESTRAL SPECIES	152	ENSGT00530000063811.B.a	ENSGT00940000158615	ENSGT00940000155182.b	ENSGT01070000253909	ENSGT00940000156383.b.c	ENSGT00950000182928.A.b	ENSGT00940000164250	ENSGT00940000156871.o	ENSGT00390000018351	ENSGT00940000162007	ENSGT00940000161539	ENSGT00550000075075	ENSGT00940000159633.l	ENSGT00940000159669.a	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00390000013867.bc.a.a.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT01060000248528.b.l	ENSGT00950000183089.c.b	ENSGT00940000155874.a	ENSGT00940000159875	ENSGT00940000156888.d	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b
Mexicana tetra	MODERN SPECIES	61	tchp (ENSAMXG00000004358)	GIT2 (ENSAMXG00000004320)	ankrd13a (ENSAMXG00000004307)	ENSAMXG00000004296	slc6a4b (ENSAMXG00000004268)	gatc (ENSAMXG00000004252)	ENSAMXG00000030334	ENSAMXG00000035639	ENSAMXG00000029458	ENSAMXG00000039531	pxmp2 (ENSAMXG00000033317)	usp30 (ENSAMXG00000037958)	araf (ENSAMXG00000004222)	zgc:64051 (ENSAMXG00000034030)	lman2lb (ENSAMXG00000040231)	ENSAMXG00000034593 #22	ENSAMXG00000039212	cmklr1 (ENSAMXG00000040831)	CMKLR1 (ENSAMXG00000037742)	wscd2 (ENSAMXG00000030661)	ENSAMXG00000019109	klf9 (ENSAMXG00000019111)	TRPM3 (ENSAMXG00000019114)	cemip2 (ENSAMXG00000006374)	abhd17b (ENSAMXG00000031149)	zgc:101016 (ENSAMXG00000034842)	gda (ENSAMXG00000033218)	zfand5a (ENSAMXG00000030833)	TMC1 (ENSAMXG00000006254)	tmc2b (ENSAMXG00000037325)	cyp1d1 (ENSAMXG00000037995)
Red-bellied piranha	MODERN SPECIES	153	tchp (ENSPNAG00000001191)	ENSPNAG00000005710	GIT2 (ENSPNAG00000001199)	ankrd13a (ENSPNAG00000008810)	slc6a4b (ENSPNAG00000001216)	ENSPNAG00000008897	gatc (ENSPNAG00000001239)	ENSPNAG00000001243	ENSPNAG00000001261	ENSPNAG00000008951	pxmp2 (ENSPNAG00000008960)	usp30 (ENSPNAG00000009013)	araf (ENSPNAG00000009065)	zgc:64051 (ENSPNAG00000009084)	lman2lb (ENSPNAG00000001293)	ENSPNAG00000009101 #22	tm2d2 (ENSPNAG00000009123)	ENSPNAG00000009163	ENSPNAG00000009191	ENSPNAG00000009253	ENSPNAG00000009263	UNC5D (ENSPNAG00000009379)	hdr (ENSPNAG00000009412)	ENSPNAG00000009432	cyb561a3a (ENSPNAG00000009506)	histh1l1 (ENSPNAG00000009524)	loxl2b (ENSPNAG00000009552)	sfrp1a (ENSPNAG00000009565)	ENSPNAG00000009585	ZMAT4 (ENSPNAG00000009604)
Electric eel	MODERN SPECIES	618	tchp (ENSEEEG00000020637)	GIT2 (ENSEEEG00000020634)	ankrd13a (ENSEEEG00000020624)	slc6a4b (ENSEEEG00000020619)	ENSEEEG00000020611	gatc (ENSEEEG00000020610)	ENSEEEG00000020608	ENSEEEG00000020607	ENSEEEG00000020606	ENSEEEG00000020604	pxmp2 (ENSEEEG00000020600)	usp30 (ENSEEEG00000020592)	araf (ENSEEEG00000020461)	zgc:64051 (ENSEEEG00000020459)	lman2lb (ENSEEEG00000020456)	ENSEEEG00000020455 #22	tm2d2 (ENSEEEG00000020453)	HTRA4 (ENSEEEG00000020420)
Cyprinoidei	ANCESTRAL SPECIES	48	ENSGT00940000159086	ENSGT01030000234598.b.b	ENSGT00940000157027.n.a	ENSGT00390000012733	ENSGT01030000234578.A.b.a.a.b.c	ENSGT00940000160552	ENSGT00730000112955	ENSGT00390000005772	ENSGT00530000063370.b	ENSGT00390000016002.o.a	ENSGT00770000121827	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00950000183089.c.b	ENSGT00940000155874.a	ENSGT00940000159875	ENSGT00940000156888.c.a	ENSGT00940000156888.c.b	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES									ENSGT00390000005772.j	ENSGT00530000063370.b.g	ENSGT00390000016002.o.a.b	ENSGT00770000121827	ENSGT00940000153231.A.d	ENSGT00940000159633.j	ENSGT00940000159669.a.b	ENSGT00940000155596.q.a	ENSGT00940000158066.o.c #22	ENSGT00730000111181.b	ENSGT00940000160760.b.g	ENSGT00950000182815.a.a.b.h.b	ENSGT00940000165531.b.a.a	ENSGT00950000183197.b.a.a.c	ENSGT00950000183089.c.b.k	ENSGT00940000157037.b.a	ENSGT00940000155874.a.b	ENSGT00940000159875.e.a	ENSGT00940000156888.c.a.b	ENSGT00390000003458.m.b	ENSGT00940000156716.gb	ENSGT00940000166302.b	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a.a
Goldfish	MODERN SPECIES	3271	gtf2h2 (ENSCARG00000066059)	erap1b (ENSCARG00000065841)	ENSCARG00000065819	arvcfb (ENSCARG00000063234)	ENSCARG00000063124	tango2 (ENSCARG00000063101)	tmem150aa (ENSCARG00000063065)	ENSCARG00000063040	ccdc117 (ENSCARG00000063019)	tcn2 (ENSCARG00000062959)	RABL6 (ENSCARG00000062934)	ENSCARG00000062918	araf (ENSCARG00000059610)	zgc:64051 (ENSCARG00000059435)	lman2lb (ENSCARG00000059414)	ENSCARG00000059371 #22	tm2d2 (ENSCARG00000059355)	ENSCARG00000059267	UNC5D (ENSCARG00000057910)	cyb561a3a (ENSCARG00000057835)	ENSCARG00000057815	histh1l1 (ENSCARG00000057811)	drd7 (ENSCARG00000057806)	loxl2b (ENSCARG00000056346)	sfrp1a (ENSCARG00000056275)	ZMAT4 (ENSCARG00000056265)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00730000110989.c.b.b	ENSGT00490000043395.o	ENSGT00940000159086.o.a	ENSGT01030000234598.b.b.f	ENSGT00940000157027.n.a.f	ENSGT00390000012733.l	ENSGT01030000234578.A.b.a.a.b.c.b	ENSGT00940000160552	ENSGT00530000063370.b.g	ENSGT00390000016002.o.a.b	ENSGT00770000121827	ENSGT00940000153231.A.d	ENSGT00940000159633.j	ENSGT00940000159669.a.b	ENSGT00940000155596.q.a	ENSGT00940000158066.o.c #22	ENSGT00730000111181.b	ENSGT00940000160760.b.g	ENSGT00950000182815.a.a.b.h.b	ENSGT00940000165531.b.a.a	ENSGT00950000183197.b.a.a.c	ENSGT00950000183089.c.b.k	ENSGT00940000157037.b.a	ENSGT00940000155874.a.b	ENSGT00940000159875.e.a	ENSGT00940000156888.c.a.b	ENSGT00390000003458.m.b	ENSGT00940000156716.gb	ENSGT00940000166302.b	ENSGT00950000183012.A.a.c.b	ENSGT00940000155431.a.a
Common carp reference	MODERN SPECIES	7	zgc:86811 (ENSCCRG00000079444)	marveld2b (ENSCCRG00000003357)	oclnb (ENSCCRG00000059341)	gtf2h2 (ENSCCRG00000002382)	erap1b (ENSCCRG00000056077)	arvcfb (ENSCCRG00000052725)	tango2 (ENSCCRG00000054245)	tmem150aa (ENSCCRG00000055631)	rnf181 (ENSCCRG00000017981)	ENSCCRG00000032468	si:ch211-102c2.4 (ENSCCRG00000079019)	imp4 (ENSCCRG00000017774)	araf (ENSCCRG00000017701)	zgc:64051 (ENSCCRG00000052386)	lman2lb (ENSCCRG00000029893)	ENSCCRG00000066325 #22	tm2d2 (ENSCCRG00000029899)	ENSCCRG00000059033	ENSCCRG00000082516	cyb561a3a (ENSCCRG00000000573)	histh1l1 (ENSCCRG00000082418)	drd7 (ENSCCRG00000024322)	loxl2b (ENSCCRG00000024345)	sfrp1a (ENSCCRG00000073087)	ENSCCRG00000053917	tcima (ENSCCRG00000055493)	adam28 (ENSCCRG00000000679)	ppp3cca (ENSCCRG00000001103)	ENSCCRG00000023017	zgc:113436 (ENSCCRG00000065256)	ogfod2 (ENSCCRG00000023009)
Golden-line barbel	MODERN SPECIES	151	erap1b (ENSSGRG00000044999)	naaladl1 (ENSSGRG00000045178)	arvcfb (ENSSGRG00000045194)	ENSSGRG00000045342	tango2 (ENSSGRG00000045343)	tmem150aa (ENSSGRG00000045377)	tmem150aa (ENSSGRG00000045383)	rnf181 (ENSSGRG00000045384)	tcn2 (ENSSGRG00000045394)	RABL6 (ENSSGRG00000045397)	imp4 (ENSSGRG00000045402)	araf (ENSSGRG00000045484)	zgc:64051 (ENSSGRG00000046671)	ENSSGRG00000046673	lman2lb (ENSSGRG00000046675)	ENSSGRG00000046683 #22	tm2d2 (ENSSGRG00000046686)	ENSSGRG00000046696	ENSSGRG00000046706
Cyprininae	ANCESTRAL SPECIES	31	ENSGT00730000110989.c.b.b	ENSGT00490000043395.o	ENSGT00940000159086.o.a	ENSGT01030000234598.b.b.f	ENSGT00940000157027.n.a.f	ENSGT00390000012733.l	ENSGT01030000234578.A.b.a.a.b.c.b	ENSGT00940000160552	ENSGT00390000005772.i	ENSGT00530000063370.b.h	ENSGT00390000016002.o.a.a	ENSGT00940000153231.A.c	ENSGT00940000159633.i	ENSGT00940000159669.a.a	ENSGT00940000155596.q.b	ENSGT00940000158066.o.d #22	ENSGT00730000111181.a	ENSGT00940000160760.b.h	ENSGT00950000182815.a.a.b.h.a	ENSGT00940000165531.b.a.b	ENSGT00950000183197.b.a.a.d	ENSGT00950000183089.c.b.l	ENSGT00940000155874.a.a	ENSGT00940000159875.e.b	ENSGT00940000156888.c.a.a	ENSGT00390000003458.m.a	ENSGT00940000156716.fb	ENSGT00940000166302.a	ENSGT00980000199093
Cyprininae_a	ANCESTRAL SPECIES	305	ENSGT00730000110989.c.b.a	ENSGT00490000043395.p	ENSGT00940000159086.o.b	ENSGT01030000234598.b.b.e	ENSGT00940000157027.n.a.e	ENSGT00390000012733.k	ENSGT01030000234578.A.b.a.a.b.c.a	ENSGT00940000165973	ENSGT00390000005772.i	ENSGT00530000063370.b.h	ENSGT00390000016002.o.a.a	ENSGT00940000153231.A.c	ENSGT00940000159633.i	ENSGT00940000159669.a.a	ENSGT00940000155596.q.b	ENSGT00940000158066.o.d #22	ENSGT00730000111181.a	ENSGT00940000160760.b.h	ENSGT00950000182815.a.a.b.h.a	ENSGT00940000165531.b.a.b	ENSGT00950000183197.b.a.a.d	ENSGT00950000183089.c.b.l	ENSGT00940000155874.a.a	ENSGT00940000159875.e.b	ENSGT00940000156888.c.a.a	ENSGT00390000003458.m.a	ENSGT00940000156716.fb	ENSGT00940000166302.a	ENSGT00980000199093
Common carp reference	MODERN SPECIES	15	gtf2h2 (ENSCCRG00000001764)	erap1b (ENSCCRG00000069973)	naaladl1 (ENSCCRG00000080454)	arvcfb (ENSCCRG00000001177)	ENSCCRG00000058749	tango2 (ENSCCRG00000052723)	ENSCCRG00000080082	tmem150aa (ENSCCRG00000017989)	ccdc117 (ENSCCRG00000062003)	tcn2 (ENSCCRG00000017727)	ENSCCRG00000017723	imp4 (ENSCCRG00000017715)	araf (ENSCCRG00000017614)	zgc:64051 (ENSCCRG00000052719)	lman2lb (ENSCCRG00000052717)	ENSCCRG00000066931 #22	tm2d2 (ENSCCRG00000076382)	ENSCCRG00000070501	ENSCCRG00000066865	ENSCCRG00000040793	hdr (ENSCCRG00000016914)	cyb561a3a (ENSCCRG00000016911)	ENSCCRG00000079757	histh1l1 (ENSCCRG00000067427)	loxl2b (ENSCCRG00000017755)	sfrp1a (ENSCCRG00000000546)	ENSCCRG00000080719	tcima (ENSCCRG00000053288)	adam28 (ENSCCRG00000006572)	ppp3cca (ENSCCRG00000065565)	vps37ba (ENSCCRG00000067031)
Goldfish	MODERN SPECIES	23	marveld2b (ENSCARG00000008679)	oclnb (ENSCARG00000008688)	gtf2h2 (ENSCARG00000008707)	erap1b (ENSCARG00000008841)	naaladl1 (ENSCARG00000010549)	arvcfb (ENSCARG00000010668)	tango2 (ENSCARG00000010839)	tcn2 (ENSCARG00000010864)	rnf181 (ENSCARG00000010881)	ccdc117 (ENSCARG00000010889)	RABL6 (ENSCARG00000010904)	imp4 (ENSCARG00000010917)	araf (ENSCARG00000010937)	zgc:64051 (ENSCARG00000010955)	lman2lb (ENSCARG00000010960)	ENSCARG00000010971 #22	tm2d2 (ENSCARG00000010998)	ENSCARG00000011005	UNC5D (ENSCARG00000011057)	hdr (ENSCARG00000011720)	ENSCARG00000011747	histh1l1 (ENSCARG00000011756)	loxl2b (ENSCARG00000011792)	sfrp1a (ENSCARG00000012072)	ZMAT4 (ENSCARG00000012079)	tcima (ENSCARG00000012084)	ATP2A3 (ENSCARG00000012171)	ZZEF1 (ENSCARG00000012655)	cyb5d2 (ENSCARG00000013081)	ankfy1 (ENSCARG00000013104)	ube2g1a (ENSCARG00000013141)
Zebrafish	MODERN SPECIES	20	erap1b (ENSDARG00000021859)	naaladl1 (ENSDARG00000020952)	arvcfb (ENSDARG00000061688)	tango2 (ENSDARG00000056550)	tmem150aa (ENSDARG00000068227)	rnf181 (ENSDARG00000023958)	ENSDARG00000093823	ccdc117 (ENSDARG00000091872)	tcn2 (ENSDARG00000036481)	RABL6 (ENSDARG00000077653)	si:ch211-102c2.4 (ENSDARG00000079387)	imp4 (ENSDARG00000054540)	araf (ENSDARG00000054533)	zgc:64051 (ENSDARG00000068233)	lman2lb (ENSDARG00000088663)	ENSDARG00000061509 #22	tm2d2 (ENSDARG00000035515)	ENSDARG00000005943	UNC5D (ENSDARG00000061541)	hdr (ENSDARG00000004392)	ENSDARG00000115201	cyb561a3a (ENSDARG00000056281)	zgc:153409 (ENSDARG00000061547)	histh1l1 (ENSDARG00000035519)	loxl2b (ENSDARG00000044074)	drd7 (ENSDARG00000056284)	sfrp1a (ENSDARG00000035521)	ZMAT4 (ENSDARG00000092987)	tcima (ENSDARG00000079497)	adam28 (ENSDARG00000035514)	ppp3cca (ENSDARG00000014962)
Clupeiformes	ANCESTRAL SPECIES	40										ENSGT00390000016002.o.a	ENSGT00940000153231.A	ENSGT00940000159633	ENSGT00940000159669.a	ENSGT00940000159669.b	ENSGT00940000155596.q	ENSGT00940000158066.o #22	ENSGT00730000111181	ENSGT00940000160760.b	ENSGT00950000182815.a.a.b.h	ENSGT00940000165531.b.a	ENSGT00950000183197.b.a.a	ENSGT00950000183089.c.b	ENSGT00940000155874.a	ENSGT00940000156888.c.a	ENSGT00390000003458	ENSGT00940000156716	ENSGT00940000166302	ENSGT00940000154115.d	ENSGT00950000182850.a.b.b.b.b	ENSGT00390000016333	ENSGT00940000153139.B.a
Atlantic herring	MODERN SPECIES	23	ENSCHAG00000020952	ENSCHAG00000020932	ENSCHAG00000020928	rhobtb4 (ENSCHAG00000020760)	wdr54 (ENSCHAG00000020723)	ENSCHAG00000020719	ENSCHAG00000020707	aqp3a (ENSCHAG00000020687)	nol6 (ENSCHAG00000020209)	RABL6 (ENSCHAG00000020179)	imp4 (ENSCHAG00000020166)	araf (ENSCHAG00000019976)	zgc:64051 (ENSCHAG00000019956)	ENSCHAG00000019904	lman2lb (ENSCHAG00000019868)	ENSCHAG00000019846 #22	tm2d2 (ENSCHAG00000019835)	ENSCHAG00000019653	ENSCHAG00000019629	UNC5D (ENSCHAG00000018289)	hdr (ENSCHAG00000018230)	cyb561a3a (ENSCHAG00000018220)	histh1l1 (ENSCHAG00000018193)	loxl2b (ENSCHAG00000017766)	sfrp1a (ENSCHAG00000017740)	ENSCHAG00000017714	tcima (ENSCHAG00000017708)	adam28 (ENSCHAG00000017025)	ppp3cca (ENSCHAG00000015838)	VPS37B (ENSCHAG00000015801)	abcb9 (ENSCHAG00000015679)
Denticle herring	MODERN SPECIES	2	ENSDCDG00000030947	tubb2b (ENSDCDG00000030948)	ENSDCDG00000030951	ENSDCDG00000030952	ENSDCDG00000030954	ccn1l2 (ENSDCDG00000030956)	FKBP15 (ENSDCDG00000030964)	stambpb (ENSDCDG00000030983)	dnase2 (ENSDCDG00000030985)	nfu1 (ENSDCDG00000030987)	RABL6 (ENSDCDG00000030989)	imp4 (ENSDCDG00000030997)	araf (ENSDCDG00000031008)	zgc:64051 (ENSDCDG00000031200)	lman2lb (ENSDCDG00000031201)	ENSDCDG00000031206 #22	tm2d2 (ENSDCDG00000031208)	ENSDCDG00000031211	UNC5D (ENSDCDG00000031227)	hdr (ENSDCDG00000031327)	hdr (ENSDCDG00000031336)	ENSDCDG00000031340	cyb561a3a (ENSDCDG00000031350)	loxl2b (ENSDCDG00000031378)	sfrp1a (ENSDCDG00000031498)	ENSDCDG00000031499	ENSDCDG00000014718	tcima (ENSDCDG00000014728)	adam28 (ENSDCDG00000014828)	adam28 (ENSDCDG00000017123)	ppp3cca (ENSDCDG00000017352)
Actinopterygii	ANCESTRAL SPECIES	51	ENSGT00940000165466	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000165952	ENSGT00940000162536	ENSGT00390000009387	ENSGT00940000162226	ENSGT00940000163130	ENSGT00390000017655	ENSGT00940000162972	ENSGT00940000155794	ENSGT00940000154601	ENSGT00940000164235	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00840000129953 #24	ENSGT00940000161536 #25	ENSGT00940000160713 #26	ENSGT00940000160172 #27	ENSGT00530000063509.B #28	ENSGT00940000157433 #29	ENSGT00940000158958 #30	ENSGT00730000111354 #31	ENSGT00550000075100 #33	ENSGT00940000153110.D #34
Reedfish	MODERN SPECIES	9										ENSECRG00000018843	MN1 (ENSECRG00000018858)	pitpnb (ENSECRG00000018882)	TTC28 (ENSECRG00000018934)	ENSECRG00000019003	MED13L (ENSECRG00000019031) #21	tbx3a (ENSECRG00000019092) #22	tbx5a (ENSECRG00000019695) #23	rbm19 (ENSECRG00000019738) #24	LHX5 (ENSECRG00000019793) #25	sdsl (ENSECRG00000019814) #26	SDS (ENSECRG00000019829) #27	plbd2 (ENSECRG00000019852) #28	SLC8B1 (ENSECRG00000019882) #29	TPCN1 (ENSECRG00000019924) #30	zgc:193801 (ENSECRG00000020011)	NEFH (ENSECRG00000020040)	thoc5 (ENSECRG00000020053)	ENSECRG00000020096	mtmr3 (ENSECRG00000020122)	ascc2 (ENSECRG00000020163)	RNF215 (ENSECRG00000020203)
Neopterygii	ANCESTRAL SPECIES	14	ENSGT00390000009387	ENSGT00940000162226	ENSGT00940000163130	ENSGT00390000017655	ENSGT00940000162972	ENSGT00940000155794	ENSGT00940000154601	ENSGT00940000164235	ENSGT00390000018674	ENSGT00390000012719.b	ENSGT00940000154717	ENSGT00390000015354.d.a.a	ENSGT00390000004019	ENSGT01030000234567.A.b	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23
Spotted gar	MODERN SPECIES	659	pptc7a (ENSLOCG00000007322)	TCTN1 (ENSLOCG00000007337)	hvcn1 (ENSLOCG00000007346)	ENSLOCG00000007358	CCDC63 (ENSLOCG00000007375)	myl2b (ENSLOCG00000007405)	ENSLOCG00000007417	mtmr3 (ENSLOCG00000007446)	ascc2 (ENSLOCG00000007474)	ENSLOCG00000007489	sec14l8 (ENSLOCG00000007503)	MTFP1 (ENSLOCG00000007521)	ENSLOCG00000007546	ENSLOCG00000007560	MED13L (ENSLOCG00000007571) #21	tbx3a (ENSLOCG00000007598) #22	tbx5a (ENSLOCG00000007616) #23	ENSLOCG00000007625	RPH3A (ENSLOCG00000007638)	ptpn11a (ENSLOCG00000007663)	rpl6 (ENSLOCG00000007680)	ENSLOCG00000007695	HECTD4 (ENSLOCG00000007711)	SDS (ENSLOCG00000007734) #27	sdsl (ENSLOCG00000007758) #26	ENSLOCG00000007784	TTC28 (ENSLOCG00000007797)	pitpnb (ENSLOCG00000007813)	MN1 (ENSLOCG00000007833)	zgc:153044 (ENSLOCG00000018156)	INPP5J (ENSLOCG00000007855)
Osteoglossocephalai	ANCESTRAL SPECIES	324							ENSGT00940000154308.C	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT01030000234567.A.b.c	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	35	ENSGT00530000064035.b	ENSGT00510000049510	ENSGT00390000006998	ENSGT00940000176908	ENSGT00730000111276	ENSGT00940000166276.g	ENSGT00940000165151	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p.a #22	ENSGT00940000156506.b.c #23	ENSGT00550000075100 #33	ENSGT00940000158958 #30	ENSGT00940000159789.b	ENSGT00940000154143.b.b	ENSGT00940000162790.b	ENSGT00940000159718.g	ENSGT00950000183161.a.b.s	ENSGT00940000157147.b	ENSGT00390000018059.a	ENSGT00940000153253.b.b	ENSGT00940000159244.b	ENSGT00940000160316.h	ENSGT00940000154667.a.b	ENSGT00940000158325.a
P. kingsleyae	MODERN SPECIES	169	alad (ENSPKIG00000017469)	ENSPKIG00000017507	fbxw5 (ENSPKIG00000017528)	ENSPKIG00000017553	bspry (ENSPKIG00000017584)	zmynd19 (ENSPKIG00000017618)	tmem141 (ENSPKIG00000017663)	SAPCD2 (ENSPKIG00000017704)	ENSPKIG00000017781	ENSPKIG00000017901	ARL3 (ENSPKIG00000017974)	wbp1 (ENSPKIG00000018008)	lman2la (ENSPKIG00000018038)	MTFP1 (ENSPKIG00000018083)	MED13L (ENSPKIG00000018117) #21	tbx3a (ENSPKIG00000018198) #22	tbx5a (ENSPKIG00000018233) #23	ddx54 (ENSPKIG00000018272) #33	TPCN1 (ENSPKIG00000018355) #30	RXRA (ENSPKIG00000018422)	wdr5 (ENSPKIG00000018481)	brd3a (ENSPKIG00000018511)	VAV2 (ENSPKIG00000018599)	PRRC2B (ENSPKIG00000018815)	PLPP7 (ENSPKIG00000018871)	fam78ab (ENSPKIG00000018882)	ENSPKIG00000018901	ENSPKIG00000018950
Asian bonytongue	MODERN SPECIES	21	alad (ENSSFOG00015024894)	ENSSFOG00015009254	fbxw5 (ENSSFOG00015009197)	ENSSFOG00015009277	bspry (ENSSFOG00015009306)	zmynd19 (ENSSFOG00015009314)	tmem141 (ENSSFOG00015009336)	SAPCD2 (ENSSFOG00015025215)	ENSSFOG00015015384	PAX8 (ENSSFOG00015015363)	arl3b (ENSSFOG00015015338)	wbp1 (ENSSFOG00015015317)	lman2la (ENSSFOG00015024643)	MTFP1 (ENSSFOG00015015246)	MED13L (ENSSFOG00015015197) #21	tbx3a (ENSSFOG00015015160) #22	tbx5a (ENSSFOG00015015110) #23	ddx54 (ENSSFOG00015014981) #33	TPCN1 (ENSSFOG00015014935) #30	ENSSFOG00015014928	RXRA (ENSSFOG00015014907)	ENSSFOG00015014856	ENSSFOG00015014658	VAV2 (ENSSFOG00015014468)	EDF1 (ENSSFOG00015014414)	PRRC2B (ENSSFOG00015014208)	ENSSFOG00015029331	fam78ab (ENSSFOG00015025314)	NUP214 (ENSSFOG00015014005)	NACC2 (ENSSFOG00015026693)	LHX3 (ENSSFOG00015029075)
Osteoglossiformes	ANCESTRAL SPECIES	716																ENSGT00940000158066.p.b #22	ENSGT00940000156506.b.d #23
Asian bonytongue	MODERN SPECIES	13	ENSSFOG00015026746	entr1 (ENSSFOG00015013020)	LRRC8A (ENSSFOG00015012990)	PPIL3 (ENSSFOG00015012944)	zgc:101858 (ENSSFOG00015012915)	ENSSFOG00015012908	ENSSFOG00015033295	ENSSFOG00015026117	ENSSFOG00015025734	ENSSFOG00015026856	ENSSFOG00015004922	ENSSFOG00015005321	ENSSFOG00015025034	ENSSFOG00015024506	ENSSFOG00015030810	TBX3 (ENSSFOG00015005471) #22	TBX5 (ENSSFOG00015005463) #23	ENSSFOG00015032129	ENSSFOG00015005407 #31	ENSSFOG00015005370 #31	SLC8B1 (ENSSFOG00015005358) #29	ENSSFOG00015005313	morc2 (ENSSFOG00015005258)	ENSSFOG00015005212	plbd2 (ENSSFOG00015005171) #28	ENSSFOG00015032593	LHX5 (ENSSFOG00015005143) #25	rbm19 (ENSSFOG00015005124) #24	NEFH (ENSSFOG00015024597)	thoc5 (ENSSFOG00015005005)	epg5 (ENSSFOG00015004976)
Clupeocephala	ANCESTRAL SPECIES	4	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000179483	ENSGT00940000160428.b.b	ENSGT00390000014476	ENSGT00940000159729	ENSGT00940000155591.i	ENSGT00940000155178	ENSGT00940000155434	ENSGT00940000155670	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00940000161616.c	ENSGT00940000156744.p	ENSGT00390000004524
Otomorpha	ANCESTRAL SPECIES	40	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT01030000234567.A.b.c.h	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000004524	ENSGT00530000064123.g	ENSGT00940000165981	ENSGT00390000001761	ENSGT00440000039084.a.b	ENSGT00940000155214.k.a	ENSGT00530000062932	ENSGT00390000014634	ENSGT00940000154787	ENSGT00940000158763	ENSGT00940000154416.C.c.a.a.a
Clupeiformes	ANCESTRAL SPECIES	3	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT01030000234567.A.b.c.h	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000155434	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00940000161616.c	ENSGT00940000156744.p	ENSGT00390000004524	ENSGT00530000064123.g	ENSGT00940000165981	ENSGT00390000001761	ENSGT00440000039084.a.b	ENSGT00940000155214.k.a	ENSGT00530000062932
Atlantic herring	MODERN SPECIES	3	ENSCHAG00000001482	ENSCHAG00000001582	ENSCHAG00000001618	ENSCHAG00000001655	ENSCHAG00000001671	ENSCHAG00000001730	ENSCHAG00000001764	ENSCHAG00000001768	PAX8 (ENSCHAG00000001777)	ARL3 (ENSCHAG00000001914)	wbp1 (ENSCHAG00000001967)	lman2la (ENSCHAG00000001987)	MTFP1 (ENSCHAG00000002108)	ENSCHAG00000002122	MED13L (ENSCHAG00000002320) #21	tbx3a (ENSCHAG00000006952) #22	tbx5a (ENSCHAG00000007003) #23	ddx54 (ENSCHAG00000007106) #33	ENSCHAG00000009974	ENSCHAG00000010000	ABL1 (ENSCHAG00000010052)	exosc2 (ENSCHAG00000010731)	PRDM12 (ENSCHAG00000010752)	fubp3 (ENSCHAG00000010803)	ASS1 (ENSCHAG00000011711)	si:ch211-165i18.2 (ENSCHAG00000012008)	surf4 (ENSCHAG00000012029)	surf2 (ENSCHAG00000012159)	pcyox1 (ENSCHAG00000012204)	slc20a1b (ENSCHAG00000012219)	ENSCHAG00000012273
Denticle herring	MODERN SPECIES	13	fbxw5 (ENSDCDG00000015782)	ENSDCDG00000015756	coq4 (ENSDCDG00000015746)	bspry (ENSDCDG00000015741)	zmynd19 (ENSDCDG00000015734)	ENSDCDG00000015722	ENSDCDG00000015707	ENSDCDG00000015697	PAX8 (ENSDCDG00000015684)	ARL3 (ENSDCDG00000015681)	wbp1 (ENSDCDG00000015680)	lman2la (ENSDCDG00000015676)	MTFP1 (ENSDCDG00000015673)	ENSDCDG00000015666	MED13L (ENSDCDG00000004883) #21	tbx3a (ENSDCDG00000004670) #22	tbx5a (ENSDCDG00000004659) #23	ddx54 (ENSDCDG00000003941) #33	ENSDCDG00000003902	ABL1 (ENSDCDG00000003881)	exosc2 (ENSDCDG00000003865)	PRDM12 (ENSDCDG00000003860)	fubp3 (ENSDCDG00000003578)	ASS1 (ENSDCDG00000003503)	surf4 (ENSDCDG00000003364)	surf2 (ENSDCDG00000003328)	bbln (ENSDCDG00000003323)	ENSDCDG00000003313	dnm1a (ENSDCDG00000001817)	golga2 (ENSDCDG00000001706)	haus4 (ENSDCDG00000001699)
Otophysi	ANCESTRAL SPECIES	14	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT01030000234567.A.b.c.h	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000155135	ENSGT00940000158503	ENSGT00390000004511.c.b.f	ENSGT00940000159579	ENSGT00950000183161.a.b	ENSGT00940000157147.c.b	ENSGT00940000157147.c.a	ENSGT00390000018059.a.b	ENSGT00940000165854
Characiphysae	ANCESTRAL SPECIES	74	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT01030000234567.A.b.c.h	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000159729	ENSGT00940000155591.i	ENSGT00940000155178	ENSGT00940000155434	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000158503	ENSGT00390000004511.c.b.f	ENSGT00940000159579	ENSGT00950000182879.a.b.a.a.b.b.a.a	ENSGT00940000161002
Channel catfish	MODERN SPECIES	20	FBXW5 (ENSIPUG00000016258)	traf2 (ENSIPUG00000016229)	coq4 (ENSIPUG00000016212)	bspry (ENSIPUG00000016180)	zmynd19 (ENSIPUG00000016166)	tmem141 (ENSIPUG00000016086)	sapcd2 (ENSIPUG00000016069)	znf596 (ENSIPUG00000016009)	ENSIPUG00000015992	pax8 (ENSIPUG00000015952)	wbp1 (ENSIPUG00000015925)	lman2l (ENSIPUG00000015914)	mtfp1 (ENSIPUG00000015900)	ENSIPUG00000015882	med13l (ENSIPUG00000015779) #21	tbx3 (ENSIPUG00000015749) #22	tbx5a (ENSIPUG00000015736) #23	Ddx54 (ENSIPUG00000015556) #33	ENSIPUG00000015525	abl1 (ENSIPUG00000015464)	exosc2 (ENSIPUG00000015397)	spra (ENSIPUG00000015366)	smyd1 (ENSIPUG00000015286)	thnsl2 (ENSIPUG00000015261)	NEU1 (ENSIPUG00000015242)	DQX1 (ENSIPUG00000015152)	EDF1 (ENSIPUG00000015092)	ganaba (ENSIPUG00000014865)	zfpl1 (ENSIPUG00000014814)	cdca5-a (ENSIPUG00000014770)	rom1a (ENSIPUG00000014759)
Characiphysae_b	ANCESTRAL SPECIES	83	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT01030000234567.A.b.c.h	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000158503	ENSGT00390000004511.c.b.f	ENSGT00940000159579	ENSGT00950000182879.a.b.a.a.b.b.a.a	ENSGT00940000161002	ENSGT00940000159139.b.a	ENSGT00940000162660.b.b.b.a	ENSGT00390000009753	ENSGT00390000010028
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	367														MED13L (ENSEEEG00000005348) #21	ENSEEEG00000005395 #22	ENSEEEG00000005397 #22	tbx5a (ENSEEEG00000005398) #23	ddx54 (ENSEEEG00000005409) #33	ENSEEEG00000005412	ABL1 (ENSEEEG00000005415)	exosc2 (ENSEEEG00000005420)	spra (ENSEEEG00000005425)	smyd1a (ENSEEEG00000005433)	camkk1a (ENSEEEG00000005437)	p2rx1 (ENSEEEG00000005457)
Electric eel	MODERN SPECIES	367															MED13L (ENSEEEG00000005348) #21	ENSEEEG00000005395 #22	ENSEEEG00000005397 #22	tbx5a (ENSEEEG00000005398) #23	ddx54 (ENSEEEG00000005409) #33	ENSEEEG00000005412	ABL1 (ENSEEEG00000005415)	exosc2 (ENSEEEG00000005420)	spra (ENSEEEG00000005425)	smyd1a (ENSEEEG00000005433)	camkk1a (ENSEEEG00000005437)	p2rx1 (ENSEEEG00000005457)
Characoidei	ANCESTRAL SPECIES	39	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT01030000234567.A.b.c.h	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000155135	ENSGT00940000158503	ENSGT00390000004511.c.b.f	ENSGT00940000159579	ENSGT00950000182879.a.b.a.a.b.b.a.a.b	ENSGT00940000161002	ENSGT00940000159139.b.a	ENSGT00940000162660.b.b.b.a	ENSGT00390000009753
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	687															tbx3a (ENSPNAG00000017391) #22	tbx3a (ENSPNAG00000017425) #22
Red-bellied piranha	MODERN SPECIES	687															tbx3a (ENSPNAG00000017425) #22	tbx3a (ENSPNAG00000017391) #22
Mexicana tetra	MODERN SPECIES	137	coq4 (ENSAMXG00000009257)	bspry (ENSAMXG00000036206)	zmynd19 (ENSAMXG00000029967)	tmem141 (ENSAMXG00000036871)	ENSAMXG00000038015	ENSAMXG00000035349	PAX8 (ENSAMXG00000009227)	ENSAMXG00000009234	ARL3 (ENSAMXG00000034370)	wbp1 (ENSAMXG00000043721)	lman2la (ENSAMXG00000009221)	ENSAMXG00000031194	MTFP1 (ENSAMXG00000040858)	ENSAMXG00000029819	MED13L (ENSAMXG00000009206) #21	tbx3a (ENSAMXG00000033991) #22	tbx5a (ENSAMXG00000009196) #23	ENSAMXG00000036680	ddx54 (ENSAMXG00000009189) #33	ENSAMXG00000040126	ABL1 (ENSAMXG00000034241)	exosc2 (ENSAMXG00000042605)	spra (ENSAMXG00000009174)	smyd1a (ENSAMXG00000042102)	fabp1a (ENSAMXG00000032364)	thnsl2 (ENSAMXG00000030378)	oxt (ENSAMXG00000034160)	DQX1 (ENSAMXG00000009153)	EDF1 (ENSAMXG00000030984)	ENSAMXG00000029602	SLC25A45 (ENSAMXG00000009151)
Cyprinoidei	ANCESTRAL SPECIES	78								ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00940000158066.p #22	ENSGT01030000234567.A.b.c.h	ENSGT00390000013680.a #21	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00440000033609.w	ENSGT00940000156114.c	ENSGT00940000155135	ENSGT00940000158503	ENSGT00390000004511.c.b.f	ENSGT00940000159579	ENSGT00950000183161.a.b	ENSGT00940000157147.c.a	ENSGT00390000018059.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	267										ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b.j	ENSGT00940000161868.d.b	ENSGT00950000183109.c.b.a	ENSGT00390000004019.b	ENSGT00940000158066.p.g #22	ENSGT00940000156506.b.i.b #23	ENSGT00550000075100.i.a #33	ENSGT00940000155178.i.a	ENSGT00940000153838.a.n	ENSGT00940000156114.c.j	ENSGT00940000155135.eb.a.a	ENSGT00390000004511.c.b.f.a	ENSGT00940000156317.w.b.a.b	ENSGT00530000063691.a.h	ENSGT00950000183162.a.b.i.b.b	ENSGT00940000165501.c.b	ENSGT00940000159446.a.b	ENSGT00940000159299.b	ENSGT00950000182787.C.l	ENSGT01070000253744.b.a.a.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	262										ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b.b	ENSGT00940000155061.b.j	ENSGT00940000161868.d.b	ENSGT00950000183109.c.b.a	ENSGT00390000004019.b	ENSGT00940000158066.p.g #22	ENSGT00940000156506.b.i.b #23	ENSGT00550000075100.i.a #33	ENSGT00940000155178.i.a	ENSGT00940000153838.a.n	ENSGT00940000156114.c.j	ENSGT00940000155135.eb.a.a	ENSGT00390000004511.c.b.f.a	ENSGT00940000156317.w.b.a.b	ENSGT00530000063691.a.h	ENSGT00950000183162.a.b.i.b.b	ENSGT00940000165501.c.b	ENSGT00940000159446.a.b	ENSGT00940000159299.b	ENSGT00950000182787.C.l	ENSGT01070000253744.b.a.a.a.b.b
Golden-line barbel	MODERN SPECIES	1103										ENSSGRG00000013063	ENSSGRG00000013067	ENSSGRG00000013069	ENSSGRG00000013070	wbp1 (ENSSGRG00000013072)	MTFP1 (ENSSGRG00000013074)	tbx3a (ENSSGRG00000013077) #22	tbx5a (ENSSGRG00000013095) #23	ddx54 (ENSSGRG00000013096) #33	rab14l (ENSSGRG00000013097)	ABL1 (ENSSGRG00000013225)	oxt (ENSSGRG00000013538)
Common carp reference	MODERN SPECIES	15										ENSCCRG00000056779	ENSCCRG00000014895	ENSCCRG00000014881	ENSCCRG00000014873	wbp1 (ENSCCRG00000060447)	ENSCCRG00000047350	tbx3a (ENSCCRG00000034962) #22	tbx5a (ENSCCRG00000043225) #23	ddx54 (ENSCCRG00000022390) #33	rab14l (ENSCCRG00000053093)	ENSCCRG00000000515	ENSCCRG00000000379	ENSCCRG00000000364	ENSCCRG00000058700	ENSCCRG00000071340	ENSCCRG00000058879	ENSCCRG00000056776	ENSCCRG00000032514	zgc:65851 (ENSCCRG00000058685)	ENSCCRG00000066495	add2 (ENSCCRG00000031781)	ENSCCRG00000052303
Goldfish	MODERN SPECIES	23	ENSCARG00000029683	oxt (ENSCARG00000029688)	ENSCARG00000029692	ckap2l (ENSCARG00000029702)	ENSCARG00000029715	ENSCARG00000029756	add2 (ENSCARG00000029763)	hk2 (ENSCARG00000029914)	ENSCARG00000030911	ENSCARG00000030945	PAX8 (ENSCARG00000030966)	wbp1 (ENSCARG00000031100)	MTFP1 (ENSCARG00000031126)	ENSCARG00000031142	ENSCARG00000031156	tbx3a (ENSCARG00000031161) #22	tbx5a (ENSCARG00000031175) #23	ddx54 (ENSCARG00000031240) #33	ABL1 (ENSCARG00000032578)	smyd1a (ENSCARG00000033231)	fabp1a (ENSCARG00000033295)	ENSCARG00000033325	add2 (ENSCARG00000033338)	ENSCARG00000033583	sema4c (ENSCARG00000038403)	si:ch211-244o22.2 (ENSCARG00000038436)	ENSCARG00000038497	ZNRF3 (ENSCARG00000038512)	kremen1 (ENSCARG00000038589)	SUSD2 (ENSCARG00000038702)	slc39a14 (ENSCARG00000039039)
Cyprininae	ANCESTRAL SPECIES	105	ENSGT00640000091486.b	ENSGT01030000234567.B.a.b.a.b.a	ENSGT01030000234567.B.a.b.b	ENSGT00950000182988.a.b.b.b	ENSGT00940000154895.a.b	ENSGT00940000153594.c.e.a	ENSGT00940000154308.C	ENSGT00940000155061.b.i	ENSGT00940000161868.d.a	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019.a	ENSGT01030000234567.A.b.c.h.a	ENSGT00390000013680.a #21	ENSGT00940000158066.p.h #22	ENSGT00940000156506.b.i.a #23	ENSGT00550000075100.i.b #33	ENSGT00940000155178.i.b	ENSGT00940000153838.a.m	ENSGT00940000153596.B	ENSGT00440000033609.w	ENSGT00940000156114.c.i	ENSGT00940000155135.eb.a.b	ENSGT00940000158503	ENSGT00390000004511.c.b.f.b	ENSGT00940000159579	ENSGT00390000008519.bc	ENSGT00950000183161.a.b.k	ENSGT00940000157147.c.a.b	ENSGT00390000018059.a.b.b
Cyprininae_a	ANCESTRAL SPECIES	19				ENSGT00950000182988.a.b.b.b	ENSGT00940000154895.a.b	ENSGT00940000153594.c.e.a	ENSGT01100000263556.a.a.q.c.b.b.a	ENSGT00940000155061.b.i	ENSGT00940000161868.d.a	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b.b	ENSGT00940000155596.r	ENSGT00390000004019.a	ENSGT01030000234567.A.b.c.h.a	ENSGT00390000013680.a #21	ENSGT00940000158066.p.h #22	ENSGT00940000156506.b.i.a #23	ENSGT00550000075100.i.b #33	ENSGT00940000155178.i.b	ENSGT00940000153838.a.m	ENSGT00940000153596.B	ENSGT00440000033609.w	ENSGT00940000156114.c.i	ENSGT00940000155135.eb.a.b	ENSGT00940000158503	ENSGT00390000004511.c.b.f.b	ENSGT00940000159579	ENSGT00390000008519.bc	ENSGT00950000183161.a.b.k	ENSGT00940000157147.c.a.b	ENSGT00390000018059.a.b.b
Common carp reference	MODERN SPECIES	7	ENSCCRG00000032277	ENSCCRG00000070815	ENSCCRG00000023116	ENSCCRG00000074973	ENSCCRG00000023652	ENSCCRG00000023643	ENSCCRG00000047363	ENSCCRG00000059293	ENSCCRG00000078309	lman2la (ENSCCRG00000074883)	ENSCCRG00000069573	ENSCCRG00000004407	ENSCCRG00000025913	MED13L (ENSCCRG00000021719) #21	ENSCCRG00000068731	tbx3a (ENSCCRG00000026753) #22	tbx5a (ENSCCRG00000035582) #23	ENSCCRG00000026487 #33	ENSCCRG00000069023	ENSCCRG00000017461	rab14l (ENSCCRG00000018390)	ENSCCRG00000018594	exosc2 (ENSCCRG00000020189)	spra (ENSCCRG00000059807)	smyd1a (ENSCCRG00000020141)	fabp1a (ENSCCRG00000020112)	thnsl2 (ENSCCRG00000020108)	oxt (ENSCCRG00000081432)	ENSCCRG00000047995	ENSCCRG00000047989	ENSCCRG00000068778
Golden-line barbel	MODERN SPECIES	240												hcrtr2 (ENSSGRG00000042995)	ENSSGRG00000042996	ENSSGRG00000042998	MED13L (ENSSGRG00000043073) #21	tbx3a (ENSSGRG00000044308) #22	ENSSGRG00000044309 ##23	ddx54 (ENSSGRG00000044310) #33	ENSSGRG00000044312 #33	rab14l (ENSSGRG00000044316)	ENSSGRG00000044446	ABL1 (ENSSGRG00000044454)	exosc2 (ENSSGRG00000044539)	spra (ENSSGRG00000044541)	smyd1a (ENSSGRG00000044543)	fabp1a (ENSSGRG00000044628)	thnsl2 (ENSSGRG00000044632)	oxt (ENSSGRG00000044634)	DQX1 (ENSSGRG00000044640)	ENSSGRG00000044645	PRRC2B (ENSSGRG00000044653)
Goldfish	MODERN SPECIES	44	PAK3 (ENSCARG00000032035)	ENSCARG00000032257	ENSCARG00000032261	ENSCARG00000032270	hip1rb (ENSCARG00000032319)	ENSCARG00000033043	ENSCARG00000033061	PAX8 (ENSCARG00000033084)	ARL3 (ENSCARG00000033157)	ENSCARG00000033166	lman2la (ENSCARG00000033177)	MTFP1 (ENSCARG00000033196)	ENSCARG00000033219	ENSCARG00000033225	MED13L (ENSCARG00000033392) #21	tbx3a (ENSCARG00000034847) #22	tbx5a (ENSCARG00000034876) #23	rab14l (ENSCARG00000034917)	ABL1 (ENSCARG00000034989)	exosc2 (ENSCARG00000035437)	spra (ENSCARG00000035492)	smyd1a (ENSCARG00000035505)	brinp1 (ENSCARG00000035614)	ENSCARG00000035655	ENSCARG00000035663	ENSCARG00000035673	MYL4 (ENSCARG00000035692)	ASTN2 (ENSCARG00000000370)	ENSCARG00000000494	ENSCARG00000000498	ENSCARG00000000500
Zebrafish	MODERN SPECIES	20												PAX8 (ENSDARG00000015879)	wbp1 (ENSDARG00000098583)	lman2la (ENSDARG00000102657)	MTFP1 (ENSDARG00000099908)	tbx3a (ENSDARG00000002216) #22	tbx5a (ENSDARG00000024894) #23	ddx54 (ENSDARG00000105286) #33	rab14l (ENSDARG00000035188)	ABL1 (ENSDARG00000035187)	exosc2 (ENSDARG00000028688)	spra (ENSDARG00000004406)	fabp1a (ENSDARG00000019357)	smyd1a (ENSDARG00000009280)	thnsl2 (ENSDARG00000032584)	oxt (ENSDARG00000042845)	DQX1 (ENSDARG00000059455)	PRRC2B (ENSDARG00000079639)	PLPP7 (ENSDARG00000109568)	fam78ab (ENSDARG00000088222)	ENSDARG00000016212
Euteleosteomorpha	ANCESTRAL SPECIES	57	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00940000161616.c	ENSGT00940000156744.p	ENSGT00390000004524	ENSGT00530000064123	ENSGT00940000165981	ENSGT00390000001761	ENSGT00440000039084.a.b	ENSGT00940000155214.l.a.a	ENSGT00970000198035	ENSGT00940000155214.k.a
Protacanthopterygii	ANCESTRAL SPECIES	16	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000155434	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00940000161616.c	ENSGT00940000156744.p	ENSGT00390000004524	ENSGT00530000064123.i	ENSGT00940000165981	ENSGT00390000001761	ENSGT00440000039084.a.b	ENSGT00970000198035	ENSGT00940000155214.k.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	84	ENSGT00940000176908	ENSGT00730000111276.k	ENSGT00940000166276.a	ENSGT00390000003828.f	ENSGT00940000165151.a.e	ENSGT00940000153820.b.a.b	ENSGT00390000008072.n	ENSGT01100000263556.a.a.q.c.b.b.d	ENSGT00940000155061.b.h	ENSGT00940000161868.g.a	ENSGT00940000155737.a.a.b	ENSGT00950000183109.c.b.c	ENSGT00940000155596.r.a	ENSGT00390000004019.d.b	ENSGT00390000013680.a.e #21	ENSGT00940000158066.p.i #22	ENSGT00940000156506.b.e #23	ENSGT00550000075100.b #33	ENSGT00940000155178.be.b	ENSGT00940000153838.a.p	ENSGT00940000153596.B.a	ENSGT00940000161616.c.q.b	ENSGT00940000156744.p.h	ENSGT00390000004524.`b.a	ENSGT00530000064123.i.b	ENSGT00940000165981.d	ENSGT00390000001761.k	ENSGT00440000039084.a.b.c	ENSGT00940000155214.k.a.b	ENSGT00530000062932.w.b	ENSGT00940000154787.i
Salmoninae_a	ANCESTRAL SPECIES	12	ENSGT00940000176908	ENSGT00730000111276.k	ENSGT00940000166276.a	ENSGT00390000003828.f	ENSGT00940000165151.a.e	ENSGT00940000153820.b.a.b	ENSGT00390000008072.n	ENSGT01100000263556.a.a.q.c.b.b.d	ENSGT00940000155061.b.h	ENSGT00940000161868.g.a	ENSGT00940000155737.a.a.b	ENSGT00950000183109.c.b.c	ENSGT00940000155596.r.a	ENSGT00390000004019.d.b	ENSGT00390000013680.a.e #21	ENSGT00940000158066.p.i #22	ENSGT00940000156506.b.e #23	ENSGT00550000075100.b #33	ENSGT00940000155178.be.b	ENSGT00940000153838.a.p	ENSGT00940000153596.B.a	ENSGT00940000161616.c.q.b	ENSGT00940000156744.p.h	ENSGT00390000004524.`b.a	ENSGT00530000064123.i.b	ENSGT00940000165981.d	ENSGT00390000001761.k	ENSGT00440000039084.a.b.c	ENSGT00940000155214.k.a.b	ENSGT00530000062932.w.b	ENSGT00940000154787.i
Salmo	ANCESTRAL SPECIES	1	ENSGT00730000111276.k	ENSGT00940000166276.a	ENSGT00390000003828.f	ENSGT00940000165151.a.e	ENSGT00940000153820.b.a.b	ENSGT00390000008072.n	ENSGT01100000263556.a.a.q.c.b.b.d	ENSGT00940000155061.b.h	ENSGT00940000161976	ENSGT00940000161868.g.a	ENSGT00940000155737.a.a.b	ENSGT00950000183109.c.b.c	ENSGT00940000155596.r.a	ENSGT00390000004019.d.b	ENSGT00390000013680.a.e #21	ENSGT00940000158066.p.i #22	ENSGT00940000156506.b.e #23	ENSGT00550000075100.b #33	ENSGT00940000155178.be.b	ENSGT00940000153838.a.p	ENSGT00940000153596.B.a	ENSGT00940000161616.c.q.b	ENSGT00940000156744.p.h	ENSGT00390000004524.`b.a	ENSGT00530000064123.i.b	ENSGT00940000165981.d	ENSGT00390000001761.k	ENSGT00440000039084.a.b.c	ENSGT00940000155214.k.a.b	ENSGT00530000062932.w.b	ENSGT00940000154787.i
Atlantic salmon	MODERN SPECIES	2	fbxw5 (ENSSSAG00000045642)	ENSSSAG00000045688	ENSSSAG00000110412	coq4 (ENSSSAG00000093761)	bspry (ENSSSAG00000116160)	zmynd19 (ENSSSAG00000103900)	ENSSSAG00000045846	ENSSSAG00000045860	ENSSSAG00000045867	ENSSSAG00000045905	ENSSSAG00000046313	wbp1 (ENSSSAG00000097666)	lman2l (ENSSSAG00000046353)	ENSSSAG00000046705	MED13L (ENSSSAG00000046800) #21	tbx3a (ENSSSAG00000051503) #22	tbx5a (ENSSSAG00000051541) #23	ddx54 (ENSSSAG00000051599) #33	ENSSSAG00000090542	ENSSSAG00000113831	ABL1 (ENSSSAG00000052199)	exos2 (ENSSSAG00000053553)	PRDM12 (ENSSSAG00000053567)	FUBP3 (ENSSSAG00000053592)	ass1 (ENSSSAG00000053906)	bbln (ENSSSAG00000092999)	surf4 (ENSSSAG00000054039)	ciz1 (ENSSSAG00000054368)	dnm1a (ENSSSAG00000054415)	golga2 (ENSSSAG00000054568)	ENSSSAG00000054646
River trout	MODERN SPECIES	3	ENSSTUG00000040971	ENSSTUG00000040994	coq4 (ENSSTUG00000041136)	ENSSTUG00000041211	bspry (ENSSTUG00000041216)	zmynd19 (ENSSTUG00000041224)	ENSSTUG00000041269	ENSSTUG00000014015	ENSSTUG00000014017	PAX8 (ENSSTUG00000014036)	ARL3 (ENSSTUG00000014254)	wbp1 (ENSSTUG00000014258)	lman2la (ENSSTUG00000014261)	MTFP1 (ENSSTUG00000014350)	MED13L (ENSSTUG00000014456) #21	tbx3a (ENSSTUG00000016362) #22	tbx5a (ENSSTUG00000016397) #23	ddx54 (ENSSTUG00000016460) #33	ENSSTUG00000018496	ABL1 (ENSSTUG00000018521)	exosc2 (ENSSTUG00000018647)	ENSSTUG00000018691	prdm12b (ENSSTUG00000018697)	fubp3 (ENSSTUG00000018711)	ASS1 (ENSSTUG00000018795)	surf4 (ENSSTUG00000018933)	surf2 (ENSSTUG00000019170)	bbln (ENSSTUG00000019193)	ENSSTUG00000019203	dnm1a (ENSSTUG00000019236)	golga2 (ENSSTUG00000019387)
Oncorhynchus	ANCESTRAL SPECIES	18	ENSGT00940000176908	ENSGT00730000111276.k	ENSGT00940000166276.a	ENSGT00390000003828.f	ENSGT00940000165151.a.e	ENSGT00940000153820.b.a.b	ENSGT00390000008072.n	ENSGT01100000263556.a.a.q.c.b.b.d	ENSGT00940000155061.b.h	ENSGT00940000161868.g.a	ENSGT00940000155737.a.a.b	ENSGT00950000183109.c.b.c	ENSGT00940000155596.r.a	ENSGT00970000197823	ENSGT00390000013680.a.e #21	ENSGT00940000158066.p.i #22	ENSGT00940000156506.b.e #23	ENSGT00550000075100.b #33	ENSGT00940000155178.be.b	ENSGT00940000153838.a.p	ENSGT00940000153596.B.a	ENSGT00940000161616.c.q.b	ENSGT00940000156744.p.h	ENSGT00390000004524.`b.a	ENSGT00530000064123.i.b	ENSGT00940000165981.d	ENSGT00390000001761.k	ENSGT00440000039084.a.b.c	ENSGT00940000155214.k.a.b	ENSGT00530000062932.w.b.a	ENSGT00940000154787.i
Oncorhynchus_a	ANCESTRAL SPECIES	20	ENSGT00940000176908	ENSGT00730000111276.k	ENSGT00940000166276.a	ENSGT00390000003828.f	ENSGT00940000165151.a.e	ENSGT00940000153820.b.a.b	ENSGT00390000008072.n	ENSGT01100000263556.a.a.q.c.b.b.d	ENSGT00940000155061.b.h	ENSGT00940000161868.g.a	ENSGT00940000155737.a.a.b	ENSGT00950000183109.c.b.c	ENSGT00940000155596.r.a	ENSGT00970000197823	ENSGT00390000013680.a.e #21	ENSGT00940000158066.p.i #22	ENSGT00940000156506.b.e #23	ENSGT00550000075100.b #33	ENSGT00940000155178.be.b	ENSGT00940000153838.a.p	ENSGT00940000153596.B.a	ENSGT00940000161616.c.q.b	ENSGT00940000156744.p.h	ENSGT00390000004524.`b.a	ENSGT00530000064123.i.b	ENSGT00940000165981.d	ENSGT00390000001761.k	ENSGT00440000039084.a.b.c	ENSGT00940000155214.k.a.b	ENSGT00530000062932.w.b.a	ENSGT00940000154787.i
Chinook salmon	MODERN SPECIES	2953																tbx3a (ENSOTSG00005041438) #22
Coho salmon	MODERN SPECIES	21	fbxw5 (ENSOKIG00005025516)	ENSOKIG00005025541	ENSOKIG00005025565	coq4 (ENSOKIG00005025610)	bspry (ENSOKIG00005025646)	zmynd19 (ENSOKIG00005025657)	ENSOKIG00005025700	ENSOKIG00005025711	ENSOKIG00005025719	PAX8 (ENSOKIG00005025754)	ARL3 (ENSOKIG00005026102)	wbp1 (ENSOKIG00005026112)	lman2la (ENSOKIG00005026125)	ENSOKIG00005026166	MED13L (ENSOKIG00005026243) #21	tbx3a (ENSOKIG00005028148) #22	tbx5a (ENSOKIG00005028169) #23	ddx54 (ENSOKIG00005028229) #33	ENSOKIG00005029288	ABL1 (ENSOKIG00005029339)	exosc2 (ENSOKIG00005029559)	PRDM12 (ENSOKIG00005029614)	FUBP3 (ENSOKIG00005029639)	ASS1 (ENSOKIG00005029918)	surf4 (ENSOKIG00005031106)	surf2 (ENSOKIG00005031210)	bbln (ENSOKIG00005031230)	ENSOKIG00005031240	dnm1a (ENSOKIG00005031310)	golga2 (ENSOKIG00005031579)	hspa5 (ENSOKIG00005031789)
Rainbow trout	MODERN SPECIES	364	ENSOMYG00000050581	bspry (ENSOMYG00000073906)	zmynd19 (ENSOMYG00000055076)	ENSOMYG00000033880	ENSOMYG00000033888	ENSOMYG00000033906	ENSOMYG00000033937	ENSOMYG00000033962	ENSOMYG00000074189	wbp1 (ENSOMYG00000066567)	lman2la (ENSOMYG00000034022)	ENSOMYG00000034051	ENSOMYG00000052187	MED13L (ENSOMYG00000034266) #21	ENSOMYG00000074980	tbx3a (ENSOMYG00000036807) #22	tbx5a (ENSOMYG00000036825) #23	ddx54 (ENSOMYG00000037010) #33	ENSOMYG00000038917	ABL1 (ENSOMYG00000039096)	exosc2 (ENSOMYG00000039850)	PRDM12 (ENSOMYG00000039879)	FUBP3 (ENSOMYG00000039912)	ASS1 (ENSOMYG00000040078)	surf4 (ENSOMYG00000040699)	surf2 (ENSOMYG00000040840)	bbln (ENSOMYG00000040844)	ENSOMYG00000040847	dnm1a (ENSOMYG00000040884)	ENSOMYG00000040907	golga2 (ENSOMYG00000040912)
Huchen	MODERN SPECIES	164																tbx3a (ENSHHUG00000011597) #22	tbx5a (ENSHHUG00000011584) #23	ddx54 (ENSHHUG00000011390) #33	ENSHHUG00000011285	ABL1 (ENSHHUG00000011163)	exosc2 (ENSHHUG00000011111)	prdm12b (ENSHHUG00000011103)	fubp3 (ENSHHUG00000010885)	ASS1 (ENSHHUG00000010806)	surf4 (ENSHHUG00000010544)	surf2 (ENSHHUG00000010481)	bbln (ENSHHUG00000010474)	ENSHHUG00000010466	dnm1a (ENSHHUG00000010209)	ENSHHUG00000010175	ENSHHUG00000010152
Salmoninae	ANCESTRAL SPECIES	79	ENSGT00730000111276.l.a	ENSGT00940000166276.b	ENSGT00390000003828.e	ENSGT00940000165151.a.f	ENSGT00940000153820.b.a.a	ENSGT00940000153116.D	ENSGT00390000008072.m	ENSGT01100000263556.a.a.q.c.b.b.c	ENSGT00940000155061.b.g	ENSGT00940000161868.g.b	ENSGT00950000183109.c.b.d	ENSGT00940000155596.r.b	ENSGT00390000004019.c	ENSGT00390000004019.d.a	ENSGT00390000013680.a.f #21	ENSGT00940000158066.p.j #22	ENSGT00940000156506.b.f #23	ENSGT00550000075100.a #33	ENSGT00940000155178.be.a	ENSGT00940000153838.a.o	ENSGT00940000153596.B.b	ENSGT00940000161616.c.q.a	ENSGT00940000156744.p.g	ENSGT00390000004524.`b.b	ENSGT00530000064123.i.a	ENSGT00940000165981.c	ENSGT00390000001761.l	ENSGT00440000039084.a.b.d	ENSGT00970000198035	ENSGT00940000155214.k.a.a	ENSGT00530000062932.w.a
Salmoninae_a	ANCESTRAL SPECIES	7	ENSGT00730000111276.l.a	ENSGT00940000166276.b	ENSGT00390000003828.e	ENSGT00940000165151.a.f	ENSGT00940000153820.b.a.a	ENSGT00940000153116.D	ENSGT00390000008072.m	ENSGT01100000263556.a.a.q.c.b.b.c	ENSGT00940000155061.b.g	ENSGT00940000161868.g.b	ENSGT00950000183109.c.b.d	ENSGT00940000155596.r.b	ENSGT00390000004019.c	ENSGT00390000004019.d.a	ENSGT00390000013680.a.f #21	ENSGT00940000158066.p.j #22	ENSGT00940000156506.b.f #23	ENSGT00550000075100.a #33	ENSGT00940000155178.be.a	ENSGT00940000153838.a.o	ENSGT00940000153596.B.b	ENSGT00940000161616.c.q.a	ENSGT00940000156744.p.g	ENSGT00390000004524.`b.b	ENSGT00530000064123.i.a	ENSGT00940000165981.c	ENSGT00390000001761.l	ENSGT00440000039084.a.b.d	ENSGT00940000155214.k.a.a	ENSGT00530000062932.w.a	ENSGT00390000014634
Salmo	ANCESTRAL SPECIES		ENSGT00390000006998.h.a	ENSGT00730000111276.l.a	ENSGT00940000166276.b	ENSGT00390000003828.e	ENSGT00940000165151.a.f	ENSGT00940000153820.b.a.a	ENSGT00940000153116.D	ENSGT00390000008072.m	ENSGT01100000263556.a.a.q.c.b.b.c	ENSGT00940000155061.b.g	ENSGT00940000161868.g.b	ENSGT00950000183109.c.b.d	ENSGT00940000155596.r.b	ENSGT00390000004019.d.a	ENSGT00390000013680.a.f #21	ENSGT00940000158066.p.j #22	ENSGT00940000156506.b.f #23	ENSGT00550000075100.a #33	ENSGT00940000155178.be.a	ENSGT00940000153838.a.o	ENSGT00940000153596.B.b	ENSGT00940000161616.c.q.a	ENSGT00940000156744.p.g	ENSGT00390000004524.`b.b	ENSGT00530000064123.i.a	ENSGT00940000165981.c	ENSGT00990000211885	ENSGT00440000039084.a.b.d	ENSGT00940000155214.k.a.a	ENSGT00530000062932.w.a	ENSGT00390000014634.c
Atlantic salmon	MODERN SPECIES		alad (ENSSSAG00000046917)	fbxw5 (ENSSSAG00000046876)	traf2 (ENSSSAG00000046864)	coq4 (ENSSSAG00000099892)	zmynd19 (ENSSSAG00000114135)	bspry (ENSSSAG00000046851)	ENSSSAG00000085679	ENSSSAG00000082784	ENSSSAG00000083874	ENSSSAG00000046569	ENSSSAG00000108201	wbp1 (ENSSSAG00000118623)	ENSSSAG00000046506	ENSSSAG00000119392	MED13L (ENSSSAG00000045379) #21	tbx3a (ENSSSAG00000045305) #22	tbx5a (ENSSSAG00000098747) #23	RAB14 (ENSSSAG00000044909)	ABL1 (ENSSSAG00000044669)	exosc2 (ENSSSAG00000044601)	PRDM12 (ENSSSAG00000044522)	FUBP3 (ENSSSAG00000044217)	ENSSSAG00000104543	ENSSSAG00000044036	surf4 (ENSSSAG00000043718)	surf2 (ENSSSAG00000043669)	ENSSSAG00000043657	ENSSSAG00000043645	dnm1a (ENSSSAG00000042952)	golga2 (ENSSSAG00000042813)	ENSSSAG00000101792
River trout	MODERN SPECIES	15	ENSSTUG00000009546	ENSSTUG00000009535	coq4 (ENSSTUG00000009521)	bspry (ENSSTUG00000009515)	zmynd19 (ENSSTUG00000009505)	tmem141 (ENSSTUG00000009497)	ENSSTUG00000009481	ENSSTUG00000009477	ENSSTUG00000009469	ENSSTUG00000009463	PAX8 (ENSSTUG00000009418)	wbp1 (ENSSTUG00000009414)	lman2la (ENSSTUG00000009399)	MTFP1 (ENSSTUG00000009394)	MED13L (ENSSTUG00000008836) #21	tbx3a (ENSSTUG00000008807) #22	tbx5a (ENSSTUG00000008782) #23	ddx54 (ENSSTUG00000008778) #33	ENSSTUG00000008762	ABL1 (ENSSTUG00000008699)	exosc2 (ENSSTUG00000008679)	prdm12b (ENSSTUG00000008671)	fubp3 (ENSSTUG00000007715)	ASS1 (ENSSTUG00000007486)	surf4 (ENSSTUG00000007353)	surf2 (ENSSTUG00000007334)	ENSSTUG00000007308	ENSSTUG00000007291	dnm1a (ENSSTUG00000006910)	golga2 (ENSSTUG00000006666)	haus4 (ENSSTUG00000006642)
Oncorhynchus	ANCESTRAL SPECIES	19	ENSGT00390000006998.h.a	ENSGT00730000111276.l.a	ENSGT00940000166276.b	ENSGT00390000003828.e	ENSGT00940000165151.a.f	ENSGT00940000153820.b.a.a	ENSGT00940000153116.D	ENSGT00390000008072.m	ENSGT01100000263556.a.a.q.c.b.b.c	ENSGT00940000155061.b.g	ENSGT00940000161868.g.b	ENSGT00950000183109.c.b.d	ENSGT00940000155596.r.b	ENSGT00390000004019.c	ENSGT00390000013680.a.f #21	ENSGT00940000158066.p.j #22	ENSGT00940000156506.b.f #23	ENSGT00550000075100.a #33	ENSGT00940000155178.be.a	ENSGT00940000153838.a.o	ENSGT00940000153596.B.b	ENSGT00940000161616.c.q.a	ENSGT00940000156744.p.g	ENSGT00390000004524.`b.b	ENSGT00530000064123.i.a	ENSGT00940000165981.c	ENSGT00390000001761.l	ENSGT00440000039084.a.b.d	ENSGT00940000155214.k.a.a	ENSGT00530000062932.w.a	ENSGT00390000014634
Oncorhynchus_a	ANCESTRAL SPECIES	12	ENSGT00510000049510.a	ENSGT00390000006998.h.a	ENSGT00940000166276.b	ENSGT00390000003828.e	ENSGT00940000165151.a.f	ENSGT00940000153820.b.a.a	ENSGT00940000153116.D	ENSGT00390000008072.m	ENSGT01100000263556.a.a.q.c.b.b.c	ENSGT00940000155061.b.g	ENSGT00940000161868.g.b	ENSGT00950000183109.c.b.d	ENSGT00940000155596.r.b	ENSGT00390000004019.c	ENSGT00390000013680.a.f #21	ENSGT00940000158066.p.j #22	ENSGT00940000156506.b.f #23	ENSGT00550000075100.a #33	ENSGT00940000155178.be.a	ENSGT00940000153838.a.o	ENSGT00940000153596.B.b	ENSGT00940000161616.c.q.a	ENSGT00940000156744.p.g	ENSGT00390000004524.`b.b	ENSGT00530000064123.i.a	ENSGT00940000165981.c	ENSGT00390000001761.l	ENSGT00440000039084.a.b.d	ENSGT00940000155214.k.a.a	ENSGT00530000062932.w.a	ENSGT00390000014634
Coho salmon	MODERN SPECIES	15	tmem203 (ENSOKIG00005006661)	alad (ENSOKIG00005006261)	ENSOKIG00005006095	coq4 (ENSOKIG00005020095)	zmynd19 (ENSOKIG00005020069)	tmem141 (ENSOKIG00005020063)	ENSOKIG00005020053	ENSOKIG00005020044	ENSOKIG00005019979	PAX8 (ENSOKIG00005019779)	wbp1 (ENSOKIG00005019771)	lman2la (ENSOKIG00005019749)	MTFP1 (ENSOKIG00005019740)	MED13L (ENSOKIG00005017715) #21	ENSOKIG00005017617	tbx3a (ENSOKIG00005017594) #22	tbx5a (ENSOKIG00005017576) #23	ENSOKIG00005017522	ABL1 (ENSOKIG00005017372)	exosc2 (ENSOKIG00005017346)	PRDM12 (ENSOKIG00005017338)	fubp3 (ENSOKIG00005016569)	ASS1 (ENSOKIG00005016442)	surf4 (ENSOKIG00005016412)	surf2 (ENSOKIG00005016402)	bbln (ENSOKIG00005016378)	ENSOKIG00005016365	dnm1a (ENSOKIG00005011964)	golga2 (ENSOKIG00005011523)	ENSOKIG00005011463	HSPA5 (ENSOKIG00005011438)
Chinook salmon	MODERN SPECIES	318																tbx3a (ENSOTSG00005017757) #22	tbx5a (ENSOTSG00005017765) #23	ddx54 (ENSOTSG00005017766) #33
Rainbow trout	MODERN SPECIES	26	alad (ENSOMYG00000041869)	fbxw5 (ENSOMYG00000074041)	ENSOMYG00000042133	coq4 (ENSOMYG00000042156)	bspry (ENSOMYG00000042162)	zmynd19 (ENSOMYG00000042184)	tmem141 (ENSOMYG00000066784)	ENSOMYG00000042202	ENSOMYG00000051805	ENSOMYG00000042220	ENSOMYG00000042268	wbp1 (ENSOMYG00000042607)	lman2la (ENSOMYG00000042614)	ENSOMYG00000042631	MED13L (ENSOMYG00000042837) #21	tbx3a (ENSOMYG00000044386) #22	tbx5a (ENSOMYG00000044392) #23	ddx54 (ENSOMYG00000044398) #33	ENSOMYG00000061663	ENSOMYG00000054603	ABL1 (ENSOMYG00000027335)	ENSOMYG00000061507	exosc2 (ENSOMYG00000027435)	PRDM12 (ENSOMYG00000027478)	FUBP3 (ENSOMYG00000027630)	ENSOMYG00000028364	surf4 (ENSOMYG00000028434)	surf2 (ENSOMYG00000069864)	ENSOMYG00000029139	ENSOMYG00000029150	dnm1a (ENSOMYG00000029184)
Huchen	MODERN SPECIES	128	alad (ENSHHUG00000001753)	ENSHHUG00000002066	ENSHHUG00000002073	ENSHHUG00000002079	coq4 (ENSHHUG00000002095)	bspry (ENSHHUG00000002106)	zmynd19 (ENSHHUG00000002112)	tmem141 (ENSHHUG00000002131)	ENSHHUG00000002135	ENSHHUG00000002141	ENSHHUG00000002144	ENSHHUG00000002154	wbp1 (ENSHHUG00000002220)	lman2la (ENSHHUG00000002227)	MTFP1 (ENSHHUG00000002301)	tbx3a (ENSHHUG00000002721) #22	tbx5a (ENSHHUG00000002743) #23	ddx54 (ENSHHUG00000002778) #33	ENSHHUG00000003123	ABL1 (ENSHHUG00000003184)	exosc2 (ENSHHUG00000003239)	prdm12b (ENSHHUG00000003269)	fubp3 (ENSHHUG00000003292)	ASS1 (ENSHHUG00000003324)	surf4 (ENSHHUG00000003378)	surf2 (ENSHHUG00000003482)	bbln (ENSHHUG00000003511)	ENSHHUG00000003515	ENSHHUG00000003521	dnm1a (ENSHHUG00000003533)	golga2 (ENSHHUG00000003612)
Northern pike	MODERN SPECIES	13	fbxw5 (ENSELUG00000012852)	ENSELUG00000012878	coq4 (ENSELUG00000012896)	bspry (ENSELUG00000012914)	zmynd19 (ENSELUG00000012955)	tmem141 (ENSELUG00000012978)	SAPCD2 (ENSELUG00000000472)	ENSELUG00000012986	ENSELUG00000012993	PAX8 (ENSELUG00000013067)	ARL3 (ENSELUG00000013130)	wbp1 (ENSELUG00000013160)	lman2la (ENSELUG00000013212)	MTFP1 (ENSELUG00000013236)	MED13L (ENSELUG00000013395) #21	tbx3a (ENSELUG00000000490) #22	tbx5a (ENSELUG00000000495) #23	ddx54 (ENSELUG00000013533) #33	ENSELUG00000013571	ABL1 (ENSELUG00000013603)	exosc2 (ENSELUG00000013641)	prdm12b (ENSELUG00000013674)	fubp3 (ENSELUG00000013808)	ASS1 (ENSELUG00000013912)	surf4 (ENSELUG00000013950)	ENSELUG00000030214	surf2 (ENSELUG00000013966)	bbln (ENSELUG00000013980)	ENSELUG00000014004	dnm1a (ENSELUG00000014271)	golga2 (ENSELUG00000014460)
Acanthomorphata	ANCESTRAL SPECIES	43	ENSGT00940000176908	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00940000161616.c	ENSGT00940000156744.p	ENSGT00390000004524	ENSGT00530000064123	ENSGT00940000165981	ENSGT00390000001761	ENSGT00440000039084.a.b	ENSGT00940000155214.k.a	ENSGT00530000062932	ENSGT00940000154787
Cod	DUPLICATION
Cod	MODERN SPECIES	17	ENSGMOG00000036431	ENSGMOG00000022581	ENSGMOG00000027087	ENSGMOG00000006680	ENSGMOG00000026857	ENSGMOG00000025626	ENSGMOG00000014165	ENSGMOG00000031833	ENSGMOG00000011083	ENSGMOG00000033463	lman2la (ENSGMOG00000014980)	ENSGMOG00000033321	ENSGMOG00000009237	MED13L (ENSGMOG00000009244) #21	ENSGMOG00000023111	tbx3a (ENSGMOG00000011728) #22	tbx5a (ENSGMOG00000011740) #23	ENSGMOG00000036374	ENSGMOG00000029665	ddx54 (ENSGMOG00000011746) #33	ENSGMOG00000011766	ABL1 (ENSGMOG00000011771)	exosc2 (ENSGMOG00000011785)	PRDM12 (ENSGMOG00000011797)	FUBP3 (ENSGMOG00000017047)	ASS1 (ENSGMOG00000017022)	ENSGMOG00000016991	ENSGMOG00000016983	ENSGMOG00000014888	ENSGMOG00000014912	ENSGMOG00000014970
Cod	MODERN SPECIES	2	rtn4r (ENSGMOG00000015478)	ENSGMOG00000015487	ENSGMOG00000015613	ENSGMOG00000023142	zgc:112294 (ENSGMOG00000002785)	ENSGMOG00000008029	ENSGMOG00000018399	ENSGMOG00000020511	ENSGMOG00000013720	ENSGMOG00000011730	ENSGMOG00000033737	imp4 (ENSGMOG00000013522)	araf (ENSGMOG00000012642)	zgc:64051 (ENSGMOG00000031208)	lman2lb (ENSGMOG00000012637)	ENSGMOG00000023031 #22	tm2d2 (ENSGMOG00000034939)	ENSGMOG00000012656	hdr (ENSGMOG00000001903)	cyb561a3a (ENSGMOG00000001763)	loxl2b (ENSGMOG00000009845)	GOLGA7 (ENSGMOG00000008951)	sfrp1a (ENSGMOG00000032784)	ENSGMOG00000031662	ENSGMOG00000034244	ENSGMOG00000037010	tcima (ENSGMOG00000004303)	adam28 (ENSGMOG00000004307)	ppp3cca (ENSGMOG00000019285)	vps37ba (ENSGMOG00000025735)	abcb9 (ENSGMOG00000014194)
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00940000176908	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00940000161616.c	ENSGT00940000156744.p	ENSGT00390000004524	ENSGT00530000064123	ENSGT00940000165981	ENSGT00390000001761	ENSGT00440000039084.a.b	ENSGT00940000155214.k.a	ENSGT00530000062932	ENSGT00940000154787
Pinecone sodierfish	MODERN SPECIES	3	ENSMMDG00005012409	coq4 (ENSMMDG00005012410)	bspry (ENSMMDG00005012413)	zmynd19 (ENSMMDG00005012417)	tmem141 (ENSMMDG00005012418)	SAPCD2 (ENSMMDG00005012420)	ENSMMDG00005012421	ENSMMDG00005012424	ENSMMDG00005012426	PAX8 (ENSMMDG00005012430)	ENSMMDG00005012434	wbp1 (ENSMMDG00005012435)	lman2la (ENSMMDG00005012436)	MTFP1 (ENSMMDG00005012441)	MED13L (ENSMMDG00005012448) #21	tbx3a (ENSMMDG00005012452) #22	tbx5a (ENSMMDG00005012460) #23	ddx54 (ENSMMDG00005012485) #33	rab14 (ENSMMDG00005013704)	ABL1 (ENSMMDG00005013709)	exosc2 (ENSMMDG00005013919)	prdm12b (ENSMMDG00005013922)	ASS1 (ENSMMDG00005013928)	surf4 (ENSMMDG00005013937)	surf2 (ENSMMDG00005013953)	bbln (ENSMMDG00005013954)	ENSMMDG00005013958	dnm1a (ENSMMDG00005013986)	golga2 (ENSMMDG00005016681)	hspa5 (ENSMMDG00005016686)	rabepk (ENSMMDG00005016701)
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00940000176908	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b
Tiger tail seahorse	MODERN SPECIES	143																tbx3a (ENSHCOG00000019347) #22	tbx5a (ENSHCOG00000019315) #23	ddx54 (ENSHCOG00000019287) #33	rab14 (ENSHCOG00000019224)	ABL1 (ENSHCOG00000019180)	exosc2 (ENSHCOG00000019130)	RIC1 (ENSHCOG00000019095)	ERMP1 (ENSHCOG00000019022)	oaz1b (ENSHCOG00000019012)	UHRF2 (ENSHCOG00000018996)	ENSHCOG00000018984	MLANA (ENSHCOG00000018979)	ENSHCOG00000018966	ENSHCOG00000018934	ENSHCOG00000018930	nup155 (ENSHCOG00000018914)
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00940000176177	ENSGT00390000010427.c.s.a	ENSGT00390000016532
Pomacentridae	ANCESTRAL SPECIES	12	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Pomacentridae_A	ANCESTRAL SPECIES	10	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Amphiprion	ANCESTRAL SPECIES	5	ENSGT00730000111276	ENSGT00940000166276.c	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000016532	ENSGT00730000112225.a	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Clown anemonefish	MODERN SPECIES	1699																tbx3a (ENSAOCG00000002366) #22	tbx5a (ENSAOCG00000008366) #23	ddx54 (ENSAOCG00000008449) #33	rab14 (ENSAOCG00000008492)	ABL1 (ENSAOCG00000008544)	exosc2 (ENSAOCG00000008577)
Orange clownfish	MODERN SPECIES	7	fbxw5 (ENSAPEG00000015014)	ENSAPEG00000014928	coq4 (ENSAPEG00000014905)	bspry (ENSAPEG00000014861)	zmynd19 (ENSAPEG00000014820)	tmem141 (ENSAPEG00000014790)	ENSAPEG00000014783	ENSAPEG00000014777	ENSAPEG00000014724	PAX8 (ENSAPEG00000014668)	ARL3 (ENSAPEG00000014648)	wbp1 (ENSAPEG00000014639)	lman2la (ENSAPEG00000014593)	MTFP1 (ENSAPEG00000014577)	MED13L (ENSAPEG00000014442) #21	tbx3a (ENSAPEG00000014398) #22	tbx5a (ENSAPEG00000014372) #23	ddx54 (ENSAPEG00000014287) #33	rab14 (ENSAPEG00000014246)	ABL1 (ENSAPEG00000014156)	exosc2 (ENSAPEG00000014088)	RIC1 (ENSAPEG00000013948)	ERMP1 (ENSAPEG00000013820)	oaz1b (ENSAPEG00000013799)	UHRF2 (ENSAPEG00000013724)	KIAA2026 (ENSAPEG00000013675)	MLANA (ENSAPEG00000013661)	ENSAPEG00000013035	nup155 (ENSAPEG00000012883)	ENSAPEG00000012876	ENSAPEG00000012806
Spiny chromis	MODERN SPECIES	37	NSMF (ENSAPOG00000000208)	ENSAPOG00000007815	clic3 (ENSAPOG00000007855)	fut7 (ENSAPOG00000007869)	pou5f3 (ENSAPOG00000007877)	npdc1a (ENSAPOG00000007885)	ENSAPOG00000007971	ENSAPOG00000007983	ENSAPOG00000008007	PAX8 (ENSAPOG00000008062)	ARL3 (ENSAPOG00000008070)	wbp1 (ENSAPOG00000008077)	lman2la (ENSAPOG00000008137)	MTFP1 (ENSAPOG00000000692)	MED13L (ENSAPOG00000008309) #21	tbx3a (ENSAPOG00000008347) #22	tbx5a (ENSAPOG00000008497) #23	ddx54 (ENSAPOG00000008602) #33	rab14 (ENSAPOG00000008641)	ABL1 (ENSAPOG00000008719)	exosc2 (ENSAPOG00000008861)	RIC1 (ENSAPOG00000009018)	ERMP1 (ENSAPOG00000009111)	oaz1b (ENSAPOG00000001045)	UHRF2 (ENSAPOG00000009269)	ENSAPOG00000009289	ENSAPOG00000009378	ENSAPOG00000010172	nup155 (ENSAPOG00000010371)	ENSAPOG00000010383	ENSAPOG00000010409
Bicolor damselfish	MODERN SPECIES	1313															MED13L (ENSSPAG00000008154) #21	tbx3a (ENSSPAG00000008106) #22	tbx5a (ENSSPAG00000008086) #23
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225
Haplochromini	ANCESTRAL SPECIES		ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.b	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225
Zebra mbuna	MODERN SPECIES	1110	nup155 (ENSMZEG00005018634)	ENSMZEG00005018651	ENSMZEG00005018663	MLANA (ENSMZEG00005018684)	KIAA2026 (ENSMZEG00005018687)	UHRF2 (ENSMZEG00005018695)	oaz1b (ENSMZEG00005018701)	ERMP1 (ENSMZEG00005018708)	RIC1 (ENSMZEG00005018724)	exosc2 (ENSMZEG00005018737)	ABL1 (ENSMZEG00005018744)	RAB14 (ENSMZEG00005018759)	ddx54 (ENSMZEG00005018773) #33	MTFP1 (ENSMZEG00005018780)	MED13L (ENSMZEG00005018789) #21	tbx3a (ENSMZEG00005018821) #22	tbx5a (ENSMZEG00005018829) #23	ENSMZEG00005018849	fbxw5 (ENSMZEG00005018853)	ENSMZEG00005018862	coq4 (ENSMZEG00005018877)	bspry (ENSMZEG00005018884)	zmynd19 (ENSMZEG00005018889)	tmem141 (ENSMZEG00005018893)	ENSMZEG00005018899	ENSMZEG00005018902	ENSMZEG00005018908	PAX8 (ENSMZEG00005018918)	ARL3 (ENSMZEG00005018934)	wbp1 (ENSMZEG00005019216)	lman2la (ENSMZEG00005019224)
Eastern happy	MODERN SPECIES	19	ENSACLG00000012032	coq4 (ENSACLG00000012074)	bspry (ENSACLG00000012152)	zmynd19 (ENSACLG00000012173)	tmem141 (ENSACLG00000012218)	ENSACLG00000012248	ENSACLG00000012251	ENSACLG00000012256	PAX8 (ENSACLG00000012277)	ARL3 (ENSACLG00000012519)	wbp1 (ENSACLG00000012561)	lman2la (ENSACLG00000012616)	ENSACLG00000012662	MTFP1 (ENSACLG00000012678)	MED13L (ENSACLG00000012703) #21	tbx3a (ENSACLG00000013104) #22	tbx5a (ENSACLG00000013144) #23	ddx54 (ENSACLG00000013176) #33	RAB14 (ENSACLG00000013505)	ABL1 (ENSACLG00000013533)	exosc2 (ENSACLG00000013613)	RIC1 (ENSACLG00000013629)	ENSACLG00000013674	ERMP1 (ENSACLG00000013682)	oaz1b (ENSACLG00000013736)	UHRF2 (ENSACLG00000013761)	ENSACLG00000013855	MLANA (ENSACLG00000013936)	ENSACLG00000013956	ENSACLG00000014104	nup155 (ENSACLG00000014123)
P. nyererei	MODERN SPECIES	297	ENSPNYG00000009680	coq4 (ENSPNYG00000009707)	bspry (ENSPNYG00000009715)	zmynd19 (ENSPNYG00000009727)	tmem141 (ENSPNYG00000009747)	SAPCD2 (ENSPNYG00000009762)	ENSPNYG00000009786	ENSPNYG00000009803	PAX8 (ENSPNYG00000009826)	ARL3 (ENSPNYG00000009889)	wbp1 (ENSPNYG00000009988)	lman2la (ENSPNYG00000010005)	ENSPNYG00000010030	MTFP1 (ENSPNYG00000010041)	MED13L (ENSPNYG00000010063) #21	tbx3a (ENSPNYG00000010173) #22	tbx5a (ENSPNYG00000010202) #23
Burton s mouthbrooder	MODERN SPECIES	383	fbxw5 (ENSHBUG00000022935)	ENSHBUG00000022970	coq4 (ENSHBUG00000022977)	bspry (ENSHBUG00000022987)	zmynd19 (ENSHBUG00000023004)	tmem141 (ENSHBUG00000023028)	SAPCD2 (ENSHBUG00000023067)	ENSHBUG00000023077	ENSHBUG00000023095	PAX8 (ENSHBUG00000023143)	ARL3 (ENSHBUG00000023185)	wbp1 (ENSHBUG00000023237)	lman2la (ENSHBUG00000023532)	MTFP1 (ENSHBUG00000023562)	MED13L (ENSHBUG00000023579) #21	tbx3a (ENSHBUG00000001017) #22	tbx5a (ENSHBUG00000023661) #23
Lyretail cichlid	MODERN SPECIES	304	ENSNBRG00000006630	coq4 (ENSNBRG00000006617)	bspry (ENSNBRG00000006579)	zmynd19 (ENSNBRG00000006551)	tmem141 (ENSNBRG00000006502)	SAPCD2 (ENSNBRG00000006464)	ENSNBRG00000006445	ENSNBRG00000006139	PAX8 (ENSNBRG00000006034)	ARL3 (ENSNBRG00000005929)	wbp1 (ENSNBRG00000005883)	lman2la (ENSNBRG00000005853)	MTFP1 (ENSNBRG00000005835)	ENSNBRG00000005809 #21	ENSNBRG00000005763 #21	tbx3a (ENSNBRG00000005734) #22	tbx5a (ENSNBRG00000005703) #23	ddx54 (ENSNBRG00000005588) #33	RAB14 (ENSNBRG00000005542)	ABL1 (ENSNBRG00000005494)	exosc2 (ENSNBRG00000005453)	RIC1 (ENSNBRG00000005373)	ERMP1 (ENSNBRG00000005304)	oaz1b (ENSNBRG00000005283)	UHRF2 (ENSNBRG00000005231)	ENSNBRG00000005203	ENSNBRG00000004956	ENSNBRG00000004934	nup155 (ENSNBRG00000004838)	ENSNBRG00000004824	ENSNBRG00000004787
Nile tilapia	MODERN SPECIES	19	coq4 (ENSONIG00000002878)	ENSONIG00000030868	bspry (ENSONIG00000000222)	zmynd19 (ENSONIG00000028142)	ENSONIG00000037352	tmem141 (ENSONIG00000041760)	ENSONIG00000000212	ENSONIG00000000211	ENSONIG00000000208	PAX8 (ENSONIG00000000205)	ARL3 (ENSONIG00000000203)	wbp1 (ENSONIG00000027290)	lman2la (ENSONIG00000000196)	MTFP1 (ENSONIG00000041595)	MED13L (ENSONIG00000000189) #21	tbx3 (ENSONIG00000042332) #22	tbx5a (ENSONIG00000040090) #23	ddx54 (ENSONIG00000037082) #33	ddx54 (ENSONIG00000041332) #33	ddx54 (ENSONIG00000038587) #33	rab14 (ENSONIG00000036893)	ABL1 (ENSONIG00000014093)	exosc2 (ENSONIG00000014086)	RIC1 (ENSONIG00000014080)	ERMP1 (ENSONIG00000014077)	oaz1b (ENSONIG00000014076)	UHRF2 (ENSONIG00000014061)	ENSONIG00000014060	ENSONIG00000014053	nup155 (ENSONIG00000014046)	ENSONIG00000020400
Midas cichlid	MODERN SPECIES	75	ENSACIG00000019540	coq4 (ENSACIG00000019527)	bspry (ENSACIG00000019511)	zmynd19 (ENSACIG00000019495)	tmem141 (ENSACIG00000019464)	SAPCD2 (ENSACIG00000019450)	ENSACIG00000019447	ENSACIG00000019268	PAX8 (ENSACIG00000019236)	ARL3 (ENSACIG00000019225)	wbp1 (ENSACIG00000019203)	lman2la (ENSACIG00000019194)	MTFP1 (ENSACIG00000019186)	ENSACIG00000019174 #21	ENSACIG00000019151 #21	tbx3a (ENSACIG00000019135) #22	tbx5a (ENSACIG00000019128) #23	ddx54 (ENSACIG00000019104) #33	rab14 (ENSACIG00000019091)	ABL1 (ENSACIG00000019070)	exosc2 (ENSACIG00000019054)	RIC1 (ENSACIG00000019017)	ERMP1 (ENSACIG00000018992)	oaz1b (ENSACIG00000018980)	UHRF2 (ENSACIG00000018947)	ENSACIG00000018906	ENSACIG00000018846	ENSACIG00000018837	nup155 (ENSACIG00000018799)	ENSACIG00000018793	ENSACIG00000018765
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00940000176177
Oryzias	ANCESTRAL SPECIES	9	ENSGT00940000176908	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00730000111276	ENSGT00940000176908	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00390000010427.c.s.a	ENSGT00940000176177	ENSGT00390000016532
Indian medaka	MODERN SPECIES	30	fbxw5 (ENSOMEG00000004115)	ENSOMEG00000004101	ENSOMEG00000004081	coq4 (ENSOMEG00000004042)	bspry (ENSOMEG00000004022)	zmynd19 (ENSOMEG00000003996)	tmem141 (ENSOMEG00000003982)	ENSOMEG00000003971	ENSOMEG00000003949	PAX8 (ENSOMEG00000003907)	ARL3 (ENSOMEG00000003861)	wbp1 (ENSOMEG00000003832)	lman2la (ENSOMEG00000003804)	MTFP1 (ENSOMEG00000003760)	MED13L (ENSOMEG00000003740) #21	tbx3a (ENSOMEG00000003704) #22	tbx5a (ENSOMEG00000003688) #23	ddx54 (ENSOMEG00000003663) #33	rab14 (ENSOMEG00000003623)	ABL1 (ENSOMEG00000003602)	exosc2 (ENSOMEG00000003533)	RIC1 (ENSOMEG00000003478)	ERMP1 (ENSOMEG00000003427)	oaz1b (ENSOMEG00000003395)	UHRF2 (ENSOMEG00000003365)	ENSOMEG00000003312	ENSOMEG00000003288	ENSOMEG00000003269	ENSOMEG00000003253	nup155 (ENSOMEG00000003206)	ENSOMEG00000003115
Javanese ricefish	MODERN SPECIES	3	ENSOJAG00000009798	fbxw5 (ENSOJAG00000009766)	ENSOJAG00000009702	coq4 (ENSOJAG00000009686)	bspry (ENSOJAG00000009678)	zmynd19 (ENSOJAG00000009661)	tmem141 (ENSOJAG00000009651)	SAPCD2 (ENSOJAG00000009573)	ENSOJAG00000009564	PAX8 (ENSOJAG00000009455)	ARL3 (ENSOJAG00000009403)	wbp1 (ENSOJAG00000009366)	lman2la (ENSOJAG00000009292)	MTFP1 (ENSOJAG00000009271)	MED13L (ENSOJAG00000006889) #21	tbx3a (ENSOJAG00000006828) #22	tbx5a (ENSOJAG00000006790) #23	ddx54 (ENSOJAG00000006259) #33	rab14 (ENSOJAG00000006196)	ABL1 (ENSOJAG00000006145)	exosc2 (ENSOJAG00000005986)	RIC1 (ENSOJAG00000005894)	ERMP1 (ENSOJAG00000005824)	oaz1b (ENSOJAG00000005802)	UHRF2 (ENSOJAG00000005315)	KIAA2026 (ENSOJAG00000005246)	MLANA (ENSOJAG00000005239)	ENSOJAG00000004961	ENSOJAG00000004903	BMP10 (ENSOJAG00000004699)	smad4a (ENSOJAG00000004544)
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00940000176908	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b
Chinese medaka	MODERN SPECIES	489	fubp3 (ENSOSIG00000016185)	prdm12b (ENSOSIG00000016416)	fbxw5 (ENSOSIG00000016418)	ENSOSIG00000016421	bspry (ENSOSIG00000016424)	zmynd19 (ENSOSIG00000016426)	tmem141 (ENSOSIG00000016428)	ENSOSIG00000016430	ENSOSIG00000016434	PAX8 (ENSOSIG00000016436)	ARL3 (ENSOSIG00000016466)	wbp1 (ENSOSIG00000016467)	lman2la (ENSOSIG00000016469)	MTFP1 (ENSOSIG00000016497)	MED13L (ENSOSIG00000016571) #21	tbx3a (ENSOSIG00000019228) #22	tbx5a (ENSOSIG00000019232) #23	ddx54 (ENSOSIG00000000192) #33	rab14 (ENSOSIG00000000271)	ABL1 (ENSOSIG00000000316)	exosc2 (ENSOSIG00000000805)	RIC1 (ENSOSIG00000000883)	ERMP1 (ENSOSIG00000002812)	oaz1b (ENSOSIG00000002866)	UHRF2 (ENSOSIG00000002953)	ENSOSIG00000003071	ENSOSIG00000003125	ENSOSIG00000005494	ENSOSIG00000005495	BMP10 (ENSOSIG00000005497)	smad4a (ENSOSIG00000005505)
Japanese Medaka HdrR	MODERN SPECIES	3	ENSORLG00000027265	fbxw5 (ENSORLG00000007130)	ENSORLG00000007166	coq4 (ENSORLG00000007173)	bspry (ENSORLG00000007186)	zmynd19 (ENSORLG00000023521)	tmem141 (ENSORLG00000027516)	ENSORLG00000007205	ENSORLG00000007214	PAX8 (ENSORLG00000007225)	ENSORLG00000007235	wbp1 (ENSORLG00000007241)	lman2la (ENSORLG00000007255)	MTFP1 (ENSORLG00000007264)	MED13L (ENSORLG00000007298) #21	tbx3a (ENSORLG00000007316) #22	tbx5a (ENSORLG00000022701) #23	ddx54 (ENSORLG00000007385) #33	rab14 (ENSORLG00000007406)	ABL1 (ENSORLG00000007426)	exosc2 (ENSORLG00000007443)	RIC1 (ENSORLG00000007468)	ERMP1 (ENSORLG00000007495)	UHRF2 (ENSORLG00000007546)	oaz1b (ENSORLG00000007502)	ENSORLG00000026627	MLANA (ENSORLG00000007559)	ENSORLG00000007606	nup155 (ENSORLG00000007635)	ENSORLG00000028358	ENSORLG00000007651
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00390000016532
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000154615.i.a.a.c.b.a.b.b	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00390000016532
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000154615.i.a.a.c.b.a.b.b	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b
Poecilia	ANCESTRAL SPECIES	12	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000154615.i.a.a.c.b.a.b.b	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b
Guppy	DUPLICATION
Guppy	DUPLICATION
Guppy	MODERN SPECIES	64																ENSPREG00000008793 #22	ENSPREG00000008780 #22
Guppy	MODERN SPECIES	64															ENSPREG00000008793 #22	ENSPREG00000008780 #22
Guppy	MODERN SPECIES	442	ENSPREG00000015006	coq4 (ENSPREG00000014990)	bspry (ENSPREG00000014977)	zmynd19 (ENSPREG00000014965)	tmem141 (ENSPREG00000014928)	MFAP4 (ENSPREG00000014902)	SAPCD2 (ENSPREG00000014882)	ENSPREG00000014851	ENSPREG00000014833	PAX8 (ENSPREG00000014784)	ARL3 (ENSPREG00000014738)	wbp1 (ENSPREG00000014714)	lman2la (ENSPREG00000014686)	MTFP1 (ENSPREG00000014663)	MED13L (ENSPREG00000014561) #21	tbx3a (ENSPREG00000014513) #22	tbx5a (ENSPREG00000014440) #23	ddx54 (ENSPREG00000014372) #33	rab14 (ENSPREG00000014355)	ABL1 (ENSPREG00000014327)	exosc2 (ENSPREG00000014306)	RIC1 (ENSPREG00000014275)	ERMP1 (ENSPREG00000014257)	oaz1b (ENSPREG00000014246)	ENSPREG00000014220	ENSPREG00000014165	ENSPREG00000014082	ENSPREG00000014052	ENSPREG00000014046	nup155 (ENSPREG00000013997)	ENSPREG00000013943
NAME_6	ANCESTRAL SPECIES	12	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000154615.i.a.a.c.b.a.b.b	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00500000044904.a.b.e.a.l.d.b.a.b.a.a.a	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225
Amazon molly	MODERN SPECIES	258	coq4 (ENSPFOG00000019838)	bspry (ENSPFOG00000019837)	zmynd19 (ENSPFOG00000019836)	tmem141 (ENSPFOG00000019835)	MFAP4 (ENSPFOG00000019834)	ENSPFOG00000019833	ENSPFOG00000023048	ENSPFOG00000019832	ENSPFOG00000019831	PAX8 (ENSPFOG00000019830)	ARL3 (ENSPFOG00000019829)	wbp1 (ENSPFOG00000019828)	lman2la (ENSPFOG00000019827)	MTFP1 (ENSPFOG00000019826)	MED13L (ENSPFOG00000019825) #21	tbx3a (ENSPFOG00000024759) #22	tbx5a (ENSPFOG00000019824) #23	ENSPFOG00000019823	ddx54 (ENSPFOG00000019822) #33	RAB14 (ENSPFOG00000019821)	ABL1 (ENSPFOG00000019820)	exosc2 (ENSPFOG00000019819)	RIC1 (ENSPFOG00000019818)	ERMP1 (ENSPFOG00000019817)	oaz1b (ENSPFOG00000019816)	UHRF2 (ENSPFOG00000019815)	KIAA2026 (ENSPFOG00000019814)	MLANA (ENSPFOG00000019813)	ENSPFOG00000019812	nup155 (ENSPFOG00000019811)	ENSPFOG00000019953
Sailfin molly	MODERN SPECIES	103													ZNF462 (ENSPLAG00000004418)	RAD23B (ENSPLAG00000004424)	klf4 (ENSPLAG00000004432)	tbx3a (ENSPLAG00000004442) #22	tbx5a (ENSPLAG00000000814) #23	ENSPLAG00000004493	ddx54 (ENSPLAG00000004530) #33	RAB14 (ENSPLAG00000004551)	ABL1 (ENSPLAG00000004579)	exosc2 (ENSPLAG00000004605)	RIC1 (ENSPLAG00000004669)	ERMP1 (ENSPLAG00000004733)	oaz1b (ENSPLAG00000004747)	UHRF2 (ENSPLAG00000004783)	ENSPLAG00000004795	ENSPLAG00000004867	ENSPLAG00000004889	nup155 (ENSPLAG00000004934)	ENSPLAG00000004947
Platyfish	MODERN SPECIES	22	coq4 (ENSXMAG00000026738)	bspry (ENSXMAG00000005501)	zmynd19 (ENSXMAG00000005494)	tmem141 (ENSXMAG00000005492)	MFAP4 (ENSXMAG00000028191)	ENSXMAG00000005483	ENSXMAG00000022588	ENSXMAG00000020022	ENSXMAG00000005479	PAX8 (ENSXMAG00000005467)	wbp1 (ENSXMAG00000005449)	ARL3 (ENSXMAG00000022054)	lman2la (ENSXMAG00000005432)	MTFP1 (ENSXMAG00000022665)	MED13L (ENSXMAG00000005396) #21	tbx3a (ENSXMAG00000005372) #22	tbx5a (ENSXMAG00000005348) #23	ddx54 (ENSXMAG00000005312) #33	RAB14 (ENSXMAG00000005294)	ABL1 (ENSXMAG00000027567)	exosc2 (ENSXMAG00000005265)	RIC1 (ENSXMAG00000005243)	ERMP1 (ENSXMAG00000005226)	oaz1b (ENSXMAG00000028044)	UHRF2 (ENSXMAG00000005174)	ENSXMAG00000005170	ENSXMAG00000005171	ENSXMAG00000005119	ENSXMAG00000030005	nup155 (ENSXMAG00000005080)	ENSXMAG00000020021
NAME_4	ANCESTRAL SPECIES		ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000154615.i.a.a.c.b.a.b.b	ENSGT00940000167039	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000175928	ENSGT00390000010427.c.s.a	ENSGT00390000016532
Mummichog	MODERN SPECIES	2260			ENSFHEG00000017981	ENSFHEG00000017998	ENSFHEG00000018009	ENSFHEG00000018017	ENSFHEG00000018063	ENSFHEG00000018157	PAX8 (ENSFHEG00000018192)	ARL3 (ENSFHEG00000018216)	wbp1 (ENSFHEG00000018227)	lman2la (ENSFHEG00000018274)	MTFP1 (ENSFHEG00000018305)	MED13L (ENSFHEG00000018315) #21	ENSFHEG00000018326	tbx3a (ENSFHEG00000018347) #22	tbx5a (ENSFHEG00000018370) #23	ddx54 (ENSFHEG00000018425) #33	RAB14 (ENSFHEG00000018450)	ABL1 (ENSFHEG00000018524)	exosc2 (ENSFHEG00000018571)	RIC1 (ENSFHEG00000018706)	ERMP1 (ENSFHEG00000018835)	oaz1b (ENSFHEG00000018867)	UHRF2 (ENSFHEG00000018882)	ENSFHEG00000018962	ENSFHEG00000018991	ENSFHEG00000019424	nup155 (ENSFHEG00000019546)	ENSFHEG00000019556	ENSFHEG00000019571
Sheepshead minnow	MODERN SPECIES	330																tbx3a (ENSCVAG00000022426) #22	tbx5a (ENSCVAG00000022411) #23	ddx54 (ENSCVAG00000022404) #33	rab14 (ENSCVAG00000022353)	ABL1 (ENSCVAG00000022319)	exosc2 (ENSCVAG00000022260)	RIC1 (ENSCVAG00000022235)	ERMP1 (ENSCVAG00000022152)	ENSCVAG00000022105	UHRF2 (ENSCVAG00000022094)	ENSCVAG00000022010	MLANA (ENSCVAG00000021976)	ENSCVAG00000021971	ENSCVAG00000021961	nup155 (ENSCVAG00000021951)	ENSCVAG00000021874
Aplocheiloidei	ANCESTRAL SPECIES	5	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00390000008072	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000155596.q	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000010427.c.s.a	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b
Turquoise killifish	MODERN SPECIES	1611	COQ4 (ENSNFUG00015019693)	bspry (ENSNFUG00015019678)	ZMYND19 (ENSNFUG00015019669)	tmem141 (ENSNFUG00015019664)	ENSNFUG00015019658	ENSNFUG00015019647	ENSNFUG00015019630	PAX8 (ENSNFUG00015019611)	ARL3 (ENSNFUG00015019521)	Nfu_g_1_006652 (ENSNFUG00015019513)	LMAN2L (ENSNFUG00015019499)	MTFP1 (ENSNFUG00015019495)	ENSNFUG00015019493	ENSNFUG00015019384	ENSNFUG00015019381	tbx3a (ENSNFUG00015019378) #22	tbx5a (ENSNFUG00015019377) #23	DDX54 (ENSNFUG00015019083) #33	RAB14L (ENSNFUG00015019053)	ABL1 (ENSNFUG00015019045)	exosc2 (ENSNFUG00015019038)	ENSNFUG00015019036	KIAA1432 (ENSNFUG00015018957)	ERMP1 (ENSNFUG00015018927)	ENSNFUG00015018925	oaz1b (ENSNFUG00015018922)	UHRF2 (ENSNFUG00015016249)	ENSNFUG00015016134	ENSNFUG00015016114	ENSNFUG00015016110	ENSNFUG00015015999
Mangrove rivulus	DUPLICATION
Mangrove rivulus	MODERN SPECIES	9	klc1a (ENSKMAG00000018084)	coa8 (ENSKMAG00000018040)	bag5 (ENSKMAG00000018016)	trmt61a (ENSKMAG00000018005)	ckba (ENSKMAG00000017979)	mark3a (ENSKMAG00000017897)	eif5 (ENSKMAG00000017862)	vps29 (ENSKMAG00000017841)	ENSKMAG00000017818	ARL3 (ENSKMAG00000017791)	wbp1 (ENSKMAG00000017760)	lman2la (ENSKMAG00000017724)	MTFP1 (ENSKMAG00000017702)	MED13L (ENSKMAG00000017631) #21	ENSKMAG00000017611	tbx3a (ENSKMAG00000017582) #22	tbx5a (ENSKMAG00000017563) #23	ddx54 (ENSKMAG00000017520) #33	rab14 (ENSKMAG00000017487)	ABL1 (ENSKMAG00000017451)	exosc2 (ENSKMAG00000017397)	RIC1 (ENSKMAG00000017324)	ERMP1 (ENSKMAG00000017295)	oaz1b (ENSKMAG00000017282)	ENSKMAG00000017205	KIAA2026 (ENSKMAG00000017182)	MLANA (ENSKMAG00000017168)	ENSKMAG00000017076	zmynd19 (ENSKMAG00000017039)	bspry (ENSKMAG00000017015)	coq4 (ENSKMAG00000017001)
Mangrove rivulus	MODERN SPECIES	713															lman2lb (ENSKMAG00000004616)	ENSKMAG00000004672 #22
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225
Carangaria	ANCESTRAL SPECIES	17	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f
Seriola	ANCESTRAL SPECIES	19	ENSGT00940000176908	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f
Greater amberjack	MODERN SPECIES	216															ENSSDUG00000004352 #21	tbx3a (ENSSDUG00000004396) #22	tbx5a (ENSSDUG00000004425) #23	ddx54 (ENSSDUG00000004474) #33	rab14 (ENSSDUG00000004551)	ABL1 (ENSSDUG00000004590)	exosc2 (ENSSDUG00000004634)	RIC1 (ENSSDUG00000004672)	ERMP1 (ENSSDUG00000004729)	oaz1b (ENSSDUG00000004803)	UHRF2 (ENSSDUG00000004825)	ENSSDUG00000004895	ENSSDUG00000004924	ENSSDUG00000005001	nup155 (ENSSDUG00000005030)	ENSSDUG00000005179	ENSSDUG00000005185
Yellowtail amberjack	MODERN SPECIES	2993	ENSSLDG00000009654	ENSSLDG00000009677	coq4 (ENSSLDG00000009715)	bspry (ENSSLDG00000009739)	zmynd19 (ENSSLDG00000009755)	tmem141 (ENSSLDG00000009782)	ENSSLDG00000009803	ENSSLDG00000009821	ENSSLDG00000009845	PAX8 (ENSSLDG00000009885)	ARL3 (ENSSLDG00000009955)	wbp1 (ENSSLDG00000009987)	lman2la (ENSSLDG00000010011)	MTFP1 (ENSSLDG00000010055)	MED13L (ENSSLDG00000010110) #21	tbx3a (ENSSLDG00000010254) #22	tbx5a (ENSSLDG00000010300) #23	ddx54 (ENSSLDG00000010380) #33	rab14 (ENSSLDG00000010503)	ABL1 (ENSSLDG00000010560)	exosc2 (ENSSLDG00000010616)	RIC1 (ENSSLDG00000010673)	ERMP1 (ENSSLDG00000010736)	oaz1b (ENSSLDG00000010778)	UHRF2 (ENSSLDG00000010802)	ENSSLDG00000010851	ENSSLDG00000010900	ENSSLDG00000010985	nup155 (ENSSLDG00000011031)	ENSSLDG00000011179	ENSSLDG00000011205
Barramundi perch	MODERN SPECIES	269																tbx3a (ENSLCAG00010005685) #22	tbx5a (ENSLCAG00010005690) #23	ddx54 (ENSLCAG00010005700) #33	rab14 (ENSLCAG00010005704)	ABL1 (ENSLCAG00010005729)	exosc2 (ENSLCAG00010005872)	RIC1 (ENSLCAG00010005942)	ERMP1 (ENSLCAG00010006304)	ENSLCAG00010006334	oaz1b (ENSLCAG00010006337)	UHRF2 (ENSLCAG00010006354)	ENSLCAG00010006402	ENSLCAG00010006412	nup155 (ENSLCAG00010006449)	ENSLCAG00010006499	ARVCF (ENSLCAG00010006506)
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008372.A	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00970000194241	ENSGT00940000176177	ENSGT00390000016532	ENSGT00730000112225
Tongue sole	MODERN SPECIES	5	MYO1H (ENSCSEG00000015788)	ENSCSEG00000015829	SSH1 (ENSCSEG00000015850)	CORO1C (ENSCSEG00000015878)	ENSCSEG00000015908	TMEM119 (ENSCSEG00000015914)	iscub (ENSCSEG00000015917)	CMKLR1 (ENSCSEG00000015919)	rnf185 (ENSCSEG00000015930)	ENSCSEG00000015921	GSC2 (ENSCSEG00000015942)	ess2 (ENSCSEG00000015946)	dgcr2 (ENSCSEG00000015958)	car15 (ENSCSEG00000015989)	MED13L (ENSCSEG00000015994) #21	tbx3a (ENSCSEG00000016441) #22	tbx5a (ENSCSEG00000016451) #23	ddx54 (ENSCSEG00000016462) #33	rab14 (ENSCSEG00000016498)	ABL1 (ENSCSEG00000016527)	exosc2 (ENSCSEG00000016539)	exosc2 (ENSCSEG00000016547)	RIC1 (ENSCSEG00000016560)	ERMP1 (ENSCSEG00000016609)	oaz1b (ENSCSEG00000016651)	oaz1b (ENSCSEG00000016656)	ENSCSEG00000016668	ENSCSEG00000016706	MLANA (ENSCSEG00000016732)	ENSCSEG00000016736	ENSCSEG00000016739
Turbot	MODERN SPECIES	7	fbxw5 (ENSSMAG00000003725)	TRAF2 (ENSSMAG00000003707)	coq4 (ENSSMAG00000003693)	zmynd19 (ENSSMAG00000003656)	bspry (ENSSMAG00000030034)	ENSSMAG00000035043	ENSSMAG00000003632	ENSSMAG00000003594	ENSSMAG00000003558	ENSSMAG00000003527	ENSSMAG00000003506	wbp1 (ENSSMAG00000003482)	lman2la (ENSSMAG00000003448)	ENSSMAG00000026897	MED13L (ENSSMAG00000003366) #21	tbx3a (ENSSMAG00000003329) #22	tbx5a (ENSSMAG00000003299) #23	ddx54 (ENSSMAG00000003210) #33	ENSSMAG00000003166	ENSSMAG00000003144	exosc2 (ENSSMAG00000003112)	ENSSMAG00000003043	ENSSMAG00000003001	ENSSMAG00000002990	ENSSMAG00000002939	ENSSMAG00000002926	ENSSMAG00000002824	ENSSMAG00000002770	ENSSMAG00000002759	ENSSMAG00000002742	ENSSMAG00000002728
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f
Zig-zag eel	MODERN SPECIES	3	fbxw5 (ENSMAMG00000013169)	ENSMAMG00000013138	COQ4 (ENSMAMG00000027953)	bspry (ENSMAMG00000013084)	zmynd19 (ENSMAMG00000025065)	tmem141 (ENSMAMG00000026285)	ENSMAMG00000013046	ENSMAMG00000027224	ENSMAMG00000013009	ENSMAMG00000012962	ENSMAMG00000012951	wbp1 (ENSMAMG00000012931)	lman2la (ENSMAMG00000012904)	MTFP1 (ENSMAMG00000025995)	MED13L (ENSMAMG00000012829) #21	tbx3a (ENSMAMG00000012815) #22	tbx5a (ENSMAMG00000012799) #23	ddx54 (ENSMAMG00000012784) #33	ENSMAMG00000012750	ENSMAMG00000012709	ENSMAMG00000012627	ENSMAMG00000012491	ENSMAMG00000012466	ENSMAMG00000012458	ENSMAMG00000012395	ENSMAMG00000012373	ENSMAMG00000012172	ENSMAMG00000012098	ENSMAMG00000028079	ENSMAMG00000012047	ENSMAMG00000012033
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f
Siamese fighting fish	MODERN SPECIES	3	ENSBSLG00000015231	coq4 (ENSBSLG00000015207)	bspry (ENSBSLG00000015185)	zmynd19 (ENSBSLG00000015147)	tmem141 (ENSBSLG00000014987)	ENSBSLG00000014978	ENSBSLG00000014968	ENSBSLG00000014961	PAX8 (ENSBSLG00000014908)	ARL3 (ENSBSLG00000014889)	wbp1 (ENSBSLG00000014887)	lman2la (ENSBSLG00000014871)	MTFP1 (ENSBSLG00000014863)	ENSBSLG00000014852	MED13L (ENSBSLG00000014200) #21	tbx3a (ENSBSLG00000014066) #22	ENSBSLG00000013803	tbx5a (ENSBSLG00000013792) #23	ddx54 (ENSBSLG00000013310) #33	rab14 (ENSBSLG00000012526)	ABL1 (ENSBSLG00000012314)	exosc2 (ENSBSLG00000012167)	RIC1 (ENSBSLG00000011928)	ERMP1 (ENSBSLG00000011523)	oaz1b (ENSBSLG00000011504)	UHRF2 (ENSBSLG00000010819)	ENSBSLG00000010326	ENSBSLG00000010301	nup155 (ENSBSLG00000010054)	ENSBSLG00000010016	ENSBSLG00000010003
Climbing perch	MODERN SPECIES	3	fbxw5 (ENSATEG00000018044)	ENSATEG00000018082	coq4 (ENSATEG00000018127)	bspry (ENSATEG00000018141)	zmynd19 (ENSATEG00000027841)	tmem141 (ENSATEG00000029937)	ENSATEG00000018181	ENSATEG00000018195	ENSATEG00000018259	ENSATEG00000018296	ENSATEG00000018332	ENSATEG00000018387	lman2la (ENSATEG00000018394)	ENSATEG00000018433	MED13L (ENSATEG00000018446) #21	tbx3a (ENSATEG00000018471) #22	tbx5a (ENSATEG00000018495) #23	ddx54 (ENSATEG00000018529) #33	ENSATEG00000018600	ENSATEG00000018625	exosc2 (ENSATEG00000018680)	ENSATEG00000018719	ENSATEG00000018816	ENSATEG00000018879	ENSATEG00000018932	ENSATEG00000018999	ENSATEG00000019067	ENSATEG00000019247	ENSATEG00000019385	ENSATEG00000019396	ENSATEG00000019411
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532.l	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Fugu	MODERN SPECIES	18	ENSTRUG00000018661	coq4 (ENSTRUG00000026778)	bspry (ENSTRUG00000018663)	zmynd19 (ENSTRUG00000018664)	tmem141 (ENSTRUG00000025432)	ENSTRUG00000018665	ENSTRUG00000019940	ENSTRUG00000018666	PAX8 (ENSTRUG00000018667)	arl3b (ENSTRUG00000018668)	wbp1 (ENSTRUG00000018669)	lman2la (ENSTRUG00000018670)	MTFP1 (ENSTRUG00000021024)	MED13L (ENSTRUG00000015129) #21	ENSTRUG00000032869	tbx3a (ENSTRUG00000015097) #22	ddx54 (ENSTRUG00000014939) #33	rab14 (ENSTRUG00000032002)	ABL1 (ENSTRUG00000014808)	exosc2 (ENSTRUG00000022436)	RIC1 (ENSTRUG00000014728)	ERMP1 (ENSTRUG00000014672)	oaz1b (ENSTRUG00000014651)	ENSTRUG00000032035	UHRF2 (ENSTRUG00000014575)	ENSTRUG00000023033	ENSTRUG00000022114	ENSTRUG00000014488	nup155 (ENSTRUG00000014297)	ENSTRUG00000020119	ENSTRUG00000021607
Tetraodon	MODERN SPECIES	19	fubp3 (ENSTNIG00000009019)	prdm12b (ENSTNIG00000009020)	fbxw5 (ENSTNIG00000009021)	ENSTNIG00000009022	coq4 (ENSTNIG00000009023)	bspry (ENSTNIG00000009024)	zmynd19 (ENSTNIG00000009025)	tmem141 (ENSTNIG00000009026)	ENSTNIG00000009027	ENSTNIG00000009028	PAX8 (ENSTNIG00000009029)	ARL3 (ENSTNIG00000009030)	wbp1 (ENSTNIG00000009031)	lman2la (ENSTNIG00000009032)	MED13L (ENSTNIG00000009034) #21	tbx3a (ENSTNIG00000009035) #22	tbx5a (ENSTNIG00000009036) #23	ddx54 (ENSTNIG00000009037) #33	ENSTNIG00000009038	rab14 (ENSTNIG00000009039)	ABL1 (ENSTNIG00000009040)	RIC1 (ENSTNIG00000009041)	ERMP1 (ENSTNIG00000009042)	oaz1b (ENSTNIG00000001544)	ENSTNIG00000009043	ENSTNIG00000009044	ENSTNIG00000009045	nup155 (ENSTNIG00000009046)	ENSTNIG00000009047	ARVCF (ENSTNIG00000009048)	BMP10 (ENSTNIG00000009049)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Ballan wrasse	MODERN SPECIES	28	KDM2B (ENSLBEG00000020336)	morn3 (ENSLBEG00000020294)	orai1b (ENSLBEG00000020277)	tmem120b (ENSLBEG00000020216)	rhof (ENSLBEG00000020179)	setd1ba (ENSLBEG00000020113)	car15 (ENSLBEG00000020081)	dgcr2 (ENSLBEG00000019969)	ess2 (ENSLBEG00000019907)	GSC2 (ENSLBEG00000019891)	ENSLBEG00000019862	ENSLBEG00000019822	ENSLBEG00000019802	MTFP1 (ENSLBEG00000019772)	MED13L (ENSLBEG00000019632) #21	tbx3a (ENSLBEG00000019577) #22	tbx5a (ENSLBEG00000019549) #23	ddx54 (ENSLBEG00000019480) #33	rab14 (ENSLBEG00000019435)	ABL1 (ENSLBEG00000019337)	exosc2 (ENSLBEG00000019269)	RIC1 (ENSLBEG00000019176)	ERMP1 (ENSLBEG00000019097)	oaz1b (ENSLBEG00000019066)	UHRF2 (ENSLBEG00000018956)	ENSLBEG00000018934	ENSLBEG00000018855	ENSLBEG00000018699	ENSLBEG00000018683	nup155 (ENSLBEG00000018561)	ENSLBEG00000018492
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00730000111276	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Gilthead seabream	MODERN SPECIES	3	fbxw5 (ENSSAUG00010026148)	ENSSAUG00010026144	coq4 (ENSSAUG00010026142)	bspry (ENSSAUG00010026140)	zmynd19 (ENSSAUG00010026139)	tmem141 (ENSSAUG00010026138)	ENSSAUG00010026137	ENSSAUG00010026136	ENSSAUG00010026134	PAX8 (ENSSAUG00010026129)	ARL3 (ENSSAUG00010026128)	wbp1 (ENSSAUG00010026127)	lman2la (ENSSAUG00010026125)	MTFP1 (ENSSAUG00010026124)	MED13L (ENSSAUG00010025431) #21	tbx3a (ENSSAUG00010025409) #22	tbx5a (ENSSAUG00010025401) #23	ddx54 (ENSSAUG00010024869) #33	rab14 (ENSSAUG00010024847)	ABL1 (ENSSAUG00010024811)	exosc2 (ENSSAUG00010024796)	RIC1 (ENSSAUG00010024782)	ERMP1 (ENSSAUG00010024745)	oaz1b (ENSSAUG00010024738)	UHRF2 (ENSSAUG00010024681)	KIAA2026 (ENSSAUG00010024672)	MLANA (ENSSAUG00010024670)	ENSSAUG00010024585	nup155 (ENSSAUG00010024341)	ENSSAUG00010024333	ARVCF (ENSSAUG00010024329)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00940000176908	ENSGT00940000166276	ENSGT00390000003828	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Large yellow croaker	MODERN SPECIES	4	ENSLCRG00005013883	ENSLCRG00005013874	fbxw5 (ENSLCRG00005013868)	bspry (ENSLCRG00005013864)	zmynd19 (ENSLCRG00005013862)	tmem141 (ENSLCRG00005013859)	ENSLCRG00005013856	ENSLCRG00005013855	ENSLCRG00005013851	PAX8 (ENSLCRG00005013783)	ARL3 (ENSLCRG00005013778)	wbp1 (ENSLCRG00005013776)	lman2la (ENSLCRG00005013773)	MTFP1 (ENSLCRG00005013771)	MED13L (ENSLCRG00005012560) #21	tbx3a (ENSLCRG00005012545) #22	tbx5a (ENSLCRG00005012543) #23	ddx54 (ENSLCRG00005011592) #33	rab14 (ENSLCRG00005011551)	ABL1 (ENSLCRG00005011496)	exosc2 (ENSLCRG00005011489)	RIC1 (ENSLCRG00005011482)	ERMP1 (ENSLCRG00005011455)	oaz1b (ENSLCRG00005011446)	UHRF2 (ENSLCRG00005011361)	KIAA2026 (ENSLCRG00005011343)	MLANA (ENSLCRG00005011335)	ENSLCRG00005011233	nup155 (ENSLCRG00005011128)	ENSLCRG00005011119	ENSLCRG00005011118
European seabass	MODERN SPECIES	9	ENSDLAG00005028376	coq4 (ENSDLAG00005002266)	bspry (ENSDLAG00005027799)	zmynd19 (ENSDLAG00005002293)	tmem141 (ENSDLAG00005002309)	ENSDLAG00005002325	ENSDLAG00005002342	ENSDLAG00005002346	ENSDLAG00005002368	ENSDLAG00005002787	wbp1 (ENSDLAG00005028150)	lman2la (ENSDLAG00005031892)	ENSDLAG00005034988	MED13L (ENSDLAG00005003222) #21	ENSDLAG00005006851	tbx3a (ENSDLAG00005006894) #22	tbx5a (ENSDLAG00005006932) #23	ddx54 (ENSDLAG00005007003) #33	ENSDLAG00005008202	ENSDLAG00005008230	exosc2 (ENSDLAG00005008514)	ENSDLAG00005008555	ENSDLAG00005009689	ENSDLAG00005009941	ENSDLAG00005009969	ENSDLAG00005011109	ENSDLAG00005011169	ENSDLAG00005011338	ENSDLAG00005011767	ENSDLAG00005011755	ENSDLAG00005011789
Perciformes	ANCESTRAL SPECIES	16	ENSGT00940000166276	ENSGT00390000003828.c.b	ENSGT00390000003828.c.a	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00390000003828.c.b	ENSGT00390000003828.c.a	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT00390000008072	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b	ENSGT00940000156279.f
Channel bull blenny	MODERN SPECIES	3	fbxw5 (ENSCGOG00000005294)	ENSCGOG00000005300	coq4 (ENSCGOG00000005305)	bspry (ENSCGOG00000005328)	zmynd19 (ENSCGOG00000005330)	tmem141 (ENSCGOG00000005331)	ENSCGOG00000005332	ENSCGOG00000005333	ENSCGOG00000005337	PAX8 (ENSCGOG00000005349)	ARL3 (ENSCGOG00000005482)	wbp1 (ENSCGOG00000005495)	lman2la (ENSCGOG00000005501)	MTFP1 (ENSCGOG00000005540)	MED13L (ENSCGOG00000005576) #21	tbx3a (ENSCGOG00000006466) #22	tbx5a (ENSCGOG00000006469) #23	ddx54 (ENSCGOG00000006489) #33	rab14 (ENSCGOG00000006925)	ABL1 (ENSCGOG00000007126)	exosc2 (ENSCGOG00000007190)	RIC1 (ENSCGOG00000007380)	ERMP1 (ENSCGOG00000007891)	oaz1b (ENSCGOG00000007978)	UHRF2 (ENSCGOG00000008002)	ENSCGOG00000008669	ENSCGOG00000008729	nup155 (ENSCGOG00000011506)	ENSCGOG00000012730	ENSCGOG00000012732	ARVCF (ENSCGOG00000012737)
Pike perch	MODERN SPECIES	48	ENSSLUG00000012829	ENSSLUG00000012839	coq4 (ENSSLUG00000012847)	bspry (ENSSLUG00000012855)	zmynd19 (ENSSLUG00000012862)	tmem141 (ENSSLUG00000012873)	SAPCD2 (ENSSLUG00000012878)	ENSSLUG00000012888	ENSSLUG00000012893	PAX8 (ENSSLUG00000012900)	ARL3 (ENSSLUG00000012910)	wbp1 (ENSSLUG00000012912)	lman2la (ENSSLUG00000012917)	MTFP1 (ENSSLUG00000012925)	MED13L (ENSSLUG00000013022) #21	tbx3a (ENSSLUG00000014976) #22	tbx5a (ENSSLUG00000014999) #23	ddx54 (ENSSLUG00000015044) #33	rab14 (ENSSLUG00000015897)	ABL1 (ENSSLUG00000015925)	exosc2 (ENSSLUG00000016017)	RIC1 (ENSSLUG00000016075)	ERMP1 (ENSSLUG00000016162)	oaz1b (ENSSLUG00000016174)	UHRF2 (ENSSLUG00000016186)	ENSSLUG00000016357	ENSSLUG00000016379	nup155 (ENSSLUG00000016520)	ENSSLUG00000017131	ENSSLUG00000017136	ARVCF (ENSSLUG00000017152)
Cottioidei	ANCESTRAL SPECIES	18	ENSGT00390000003828.c.b	ENSGT00390000003828.d	ENSGT00390000003828.c.a	ENSGT00940000165151.a	ENSGT00940000153820.b.a	ENSGT00940000153116.D	ENSGT00940000167039	ENSGT01100000263556.a.a.q.c.b.b	ENSGT00940000155061.b	ENSGT00940000161868	ENSGT00940000155737.a.a	ENSGT00950000183109.c.b	ENSGT00940000155596.r	ENSGT00390000004019	ENSGT00390000013680.a #21	ENSGT00940000158066.p #22	ENSGT00940000156506.b #23	ENSGT00550000075100 #33	ENSGT00940000155178	ENSGT00940000153838.a	ENSGT00940000153596.B	ENSGT00390000002955	ENSGT00530000063839	ENSGT00940000166601	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00940000175928	ENSGT00390000016532	ENSGT00730000112225	ENSGT00940000158044.b	ENSGT00940000157027.n.b
Stickleback	MODERN SPECIES	13	fubp3 (ENSGACG00000016704)	prdm12b (ENSGACG00000016713)	fbxw5 (ENSGACG00000016714)	ENSGACG00000016724	coq4 (ENSGACG00000016728)	bspry (ENSGACG00000016732)	zmynd19 (ENSGACG00000016735)	SAPCD2 (ENSGACG00000016739)	ENSGACG00000016743	PAX8 (ENSGACG00000016747)	ARL3 (ENSGACG00000016756)	wbp1 (ENSGACG00000016766)	lman2la (ENSGACG00000016768)	MTFP1 (ENSGACG00000016771)	MED13L (ENSGACG00000016778) #21	tbx3a (ENSGACG00000016783) #22	tbx5a (ENSGACG00000016787) #23	ddx54 (ENSGACG00000016793) #33	RAB14 (ENSGACG00000016799)	ABL1 (ENSGACG00000016802)	exosc2 (ENSGACG00000016805)	RIC1 (ENSGACG00000016817)	ERMP1 (ENSGACG00000016822)	oaz1b (ENSGACG00000016830)	ENSGACG00000016831	ENSGACG00000016833	ENSGACG00000016835	nup155 (ENSGACG00000016842)	ENSGACG00000016849	ARVCF (ENSGACG00000016852)	BMP10 (ENSGACG00000016855)
Lumpfish	MODERN SPECIES	3	ENSCLMG00005012808	coq4 (ENSCLMG00005012818)	ENSCLMG00005012820	bspry (ENSCLMG00005012821)	zmynd19 (ENSCLMG00005012822)	tmem141 (ENSCLMG00005012824)	ENSCLMG00005012826	ENSCLMG00005012828	ENSCLMG00005012836	PAX8 (ENSCLMG00005012852)	ARL3 (ENSCLMG00005012854)	wbp1 (ENSCLMG00005012867)	lman2la (ENSCLMG00005012868)	MTFP1 (ENSCLMG00005012870)	MED13L (ENSCLMG00005012872) #21	tbx3a (ENSCLMG00005012883) #22	tbx5a (ENSCLMG00005012885) #23	ddx54 (ENSCLMG00005001515) #33	rab14 (ENSCLMG00005002289)	ABL1 (ENSCLMG00005002301)	exosc2 (ENSCLMG00005002457)	RIC1 (ENSCLMG00005002458)	ERMP1 (ENSCLMG00005002477)	oaz1b (ENSCLMG00005002514)	UHRF2 (ENSCLMG00005002519)	ENSCLMG00005002561	ENSCLMG00005002563	ENSCLMG00005002624	nup155 (ENSCLMG00005013612)	ENSCLMG00005013613	ENSCLMG00005013615