Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000156801 #22
Gnathostomata	ANCESTRAL SPECIES	100	ENSGT00390000002932	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000156526.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000156733 #23	ENSGT00940000158403 #21	ENSGT00940000156801 #22
Euteleostomi	ANCESTRAL SPECIES	13	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000156526.b	ENSGT00940000182021	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Sarcopterygii	ANCESTRAL SPECIES	18	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000182021	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000010494	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Amniota	ANCESTRAL SPECIES	2	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Mammalia	ANCESTRAL SPECIES	1	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Theria	ANCESTRAL SPECIES	6	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Eutheria	ANCESTRAL SPECIES	2	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Glires	ANCESTRAL SPECIES	8	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Rodentia	ANCESTRAL SPECIES	13	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Myomorpha	ANCESTRAL SPECIES	41	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Muroidea	ANCESTRAL SPECIES	56	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00950000182886.a.a.b #7	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37
Murinae	ANCESTRAL SPECIES	15	ENSGT00950000182886.a.a.b #7	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37
Mus	ANCESTRAL SPECIES	6	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863 #16	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37
Shrew mouse	MODERN SPECIES	12	Tecr (MGP_PahariEiJ_G0022878) #7	Ndufb7 (MGP_PahariEiJ_G0022877) #8	Or10k2 (MGP_PahariEiJ_G0022876) #9	MGP_PahariEiJ_G0022875 #10	Clgn (MGP_PahariEiJ_G0022874) #11	Mgat4d (MGP_PahariEiJ_G0022873) #12	Elmod2 (MGP_PahariEiJ_G0022872) #13	Ucp1 (MGP_PahariEiJ_G0022871) #14	Tbc1d9 (MGP_PahariEiJ_G0022870) #15	MGP_PahariEiJ_G0022869 #16	Rnf150 (MGP_PahariEiJ_G0022868) #17	Zfp330 (MGP_PahariEiJ_G0022867) #18	Il15 (MGP_PahariEiJ_G0022866) #19	Inpp4b (MGP_PahariEiJ_G0022865) #20	Usp38 (MGP_PahariEiJ_G0022864) #21	Gab1 (MGP_PahariEiJ_G0022863) #22	Smarca5 (MGP_PahariEiJ_G0022862) #23	MGP_PahariEiJ_G0022861 #24	Gypa (MGP_PahariEiJ_G0022860) #25	Hhip (MGP_PahariEiJ_G0022859) #26	Anapc10 (MGP_PahariEiJ_G0022858) #27	Abce1 (MGP_PahariEiJ_G0022857) #28	MGP_PahariEiJ_G0022856 #29	Smad1 (MGP_PahariEiJ_G0022855) #30	Mmaa (MGP_PahariEiJ_G0022854) #31	1700011L22Rik (MGP_PahariEiJ_G0022853) #32	MGP_PahariEiJ_G0022852 #33	Lsm6 (MGP_PahariEiJ_G0022851) #34	Slc10a7 (MGP_PahariEiJ_G0022850) #35	MGP_PahariEiJ_G0022849 #36	Pou4f2 (MGP_PahariEiJ_G0022848) #37
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863 #16	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863 #16	ENSGT00940000156171 #17	ENSGT00390000017043.j #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37
Mouse	MODERN SPECIES	17	Dnajb1 (ENSMUSG00000005483)	Tecr (ENSMUSG00000031708) #7	Ndufb7 (ENSMUSG00000033938) #8	Or10k2 (ENSMUSG00000047286) #9	Scoc (ENSMUSG00000063253) #10	Clgn (ENSMUSG00000002190) #11	Mgat4d (ENSMUSG00000035057) #12	Elmod2 (ENSMUSG00000035151) #13	Ucp1 (ENSMUSG00000031710) #14	Tbc1d9 (ENSMUSG00000031709) #15	Rnf150 (ENSMUSG00000047747) #17	Zfp330 (ENSMUSG00000031711) #18	Il15 (ENSMUSG00000031712) #19	Inpp4b (ENSMUSG00000037940) #20	Usp38 (ENSMUSG00000038250) #21	Gab1 (ENSMUSG00000031714) #22	Smarca5 (ENSMUSG00000031715) #23	Frem3 (ENSMUSG00000042353) #24	Gypa (ENSMUSG00000051839) #25	Hhip (ENSMUSG00000064325) #26	Anapc10 (ENSMUSG00000036977) #27	Abce1 (ENSMUSG00000058355) #28	Otud4 (ENSMUSG00000036990)	Smad1 (ENSMUSG00000031681) #30	Mmaa (ENSMUSG00000037022) #31	1700011L22Rik (ENSMUSG00000031682) #32	Zfp827 (ENSMUSG00000071064) #33	Lsm6 (ENSMUSG00000031683) #34	Slc10a7 (ENSMUSG00000031684) #35	Rbmxl1 (ENSMUSG00000037070) #36	Pou4f2 (ENSMUSG00000031688) #37
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863 #16	ENSGT00940000156171 #17	ENSGT00390000017043.j #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37
Steppe mouse	MODERN SPECIES	3219												Il15 (ENSMSIG00000028262) #19	Inpp4b (ENSMSIG00000028134) #20	ENSMSIG00000028125	Usp38 (ENSMSIG00000028091) #21	Gab1 (ENSMSIG00000028070) #22	Smarca5 (ENSMSIG00000028055) #23	Frem3 (ENSMSIG00000028048) #24	Gypa (ENSMSIG00000028045) #25	ENSMSIG00000028035	ENSMSIG00000028033	Hhip (ENSMSIG00000028023) #26	Anapc10 (ENSMSIG00000028017) #27	Abce1 (ENSMSIG00000028007) #28	ENSMSIG00000028006	Otud4 (ENSMSIG00000027970)
spretus	MODERN SPECIES	17	Dnajb1 (MGP_SPRETEiJ_G0032392)	Tecr (MGP_SPRETEiJ_G0032391) #7	Ndufb7 (MGP_SPRETEiJ_G0032390) #8	Or10k2 (MGP_SPRETEiJ_G0032389) #9	Clgn (MGP_SPRETEiJ_G0032388) #11	Mgat4d (MGP_SPRETEiJ_G0032387) #12	Elmod2 (MGP_SPRETEiJ_G0032386) #13	Ucp1 (MGP_SPRETEiJ_G0032385) #14	Tbc1d9 (MGP_SPRETEiJ_G0032384) #15	MGP_SPRETEiJ_G0032383 #16	Rnf150 (MGP_SPRETEiJ_G0032382) #17	MGP_SPRETEiJ_G0032381 #18	Il15 (MGP_SPRETEiJ_G0032380) #19	Inpp4b (MGP_SPRETEiJ_G0032379) #20	Usp38 (MGP_SPRETEiJ_G0032378) #21	Gab1 (MGP_SPRETEiJ_G0032377) #22	Smarca5 (MGP_SPRETEiJ_G0032376) #23	Frem3 (MGP_SPRETEiJ_G0032375) #24	Gypa (MGP_SPRETEiJ_G0032374) #25	Hhip (MGP_SPRETEiJ_G0032373) #26	Anapc10 (MGP_SPRETEiJ_G0032372) #27	Abce1 (MGP_SPRETEiJ_G0032371) #28	Otud4 (MGP_SPRETEiJ_G0032370)	Smad1 (MGP_SPRETEiJ_G0032369) #30	Mmaa (MGP_SPRETEiJ_G0032368) #31	1700011L22Rik (MGP_SPRETEiJ_G0032367) #32	MGP_SPRETEiJ_G0032366 #33	Lsm6 (MGP_SPRETEiJ_G0032365) #34	Slc10a7 (MGP_SPRETEiJ_G0032364) #35	Pou4f2 (MGP_SPRETEiJ_G0032363) #37	Ttc29 (MGP_SPRETEiJ_G0032362)
Ryukyu mouse	MODERN SPECIES	17	Tecr (MGP_CAROLIEiJ_G0031272) #7	Ndufb7 (MGP_CAROLIEiJ_G0031271) #8	Or10k2 (MGP_CAROLIEiJ_G0031270) #9	MGP_CAROLIEiJ_G0031269 #10	MGP_CAROLIEiJ_G0031268 #11	Mgat4d (MGP_CAROLIEiJ_G0031267) #12	Elmod2 (MGP_CAROLIEiJ_G0031266) #13	Ucp1 (MGP_CAROLIEiJ_G0031265) #14	Tbc1d9 (MGP_CAROLIEiJ_G0031264) #15	MGP_CAROLIEiJ_G0031263	Rnf150 (MGP_CAROLIEiJ_G0031262) #17	Zfp330 (MGP_CAROLIEiJ_G0031261) #18	Il15 (MGP_CAROLIEiJ_G0031260) #19	Inpp4b (MGP_CAROLIEiJ_G0031259) #20	Usp38 (MGP_CAROLIEiJ_G0031258) #21	Gab1 (MGP_CAROLIEiJ_G0031257) #22	MGP_CAROLIEiJ_G0031256 #23	Frem3 (MGP_CAROLIEiJ_G0031255) #24	Gypa (MGP_CAROLIEiJ_G0031254) #25	Hhip (MGP_CAROLIEiJ_G0031253) #26	Anapc10 (MGP_CAROLIEiJ_G0031252) #27	Abce1 (MGP_CAROLIEiJ_G0031251) #28	Otud4 (MGP_CAROLIEiJ_G0031250)	Smad1 (MGP_CAROLIEiJ_G0031249) #30	Mmaa (MGP_CAROLIEiJ_G0031248) #31	1700011L22Rik (MGP_CAROLIEiJ_G0031247) #32	MGP_CAROLIEiJ_G0031246 #33	Lsm6 (MGP_CAROLIEiJ_G0031245) #34	Slc10a7 (MGP_CAROLIEiJ_G0031244) #35	MGP_CAROLIEiJ_G0031243 #36	Pou4f2 (MGP_CAROLIEiJ_G0031242) #37
Rat	MODERN SPECIES	10	Tecr (ENSRNOG00000021808) #7	Ndufb7 (ENSRNOG00000028717) #8	Or10k2 (ENSRNOG00000028439) #9	Scoc (ENSRNOG00000003853) #10	Clgn (ENSRNOG00000003755) #11	Elmod2 (ENSRNOG00000028176) #13	Ucp1 (ENSRNOG00000003580) #14	Tbc1d9 (ENSRNOG00000003496) #15	Rnf150 (ENSRNOG00000003479) #17	Zfp330 (ENSRNOG00000003461) #18	LOC688712 (ENSRNOG00000033819)	Il15 (ENSRNOG00000003439) #19	Inpp4b (ENSRNOG00000018382) #20	AABR07043598.1 (ENSRNOG00000028320)	Usp38 (ENSRNOG00000026880) #21	Gab1 (ENSRNOG00000017879) #22	Smarca5 (ENSRNOG00000018149) #23	Frem3 (ENSRNOG00000039152) #24	ENSRNOG00000063111	Gypa (ENSRNOG00000062794)	Hhip (ENSRNOG00000018268) #26	Anapc10 (ENSRNOG00000018296) #27	Abce1 (ENSRNOG00000018345) #28	Otud4 (ENSRNOG00000018477)	Smad1 (ENSRNOG00000018483) #30	Mmaa (ENSRNOG00000011618) #31	LOC498933 (ENSRNOG00000011671) #32	Zfp827 (ENSRNOG00000011697) #33	Slc10a7 (ENSRNOG00000011991) #35	Rbmxl1 (ENSRNOG00000062375) #36	AABR07043626.1 (ENSRNOG00000033487)
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000160312	ENSGT00950000182886.a.a.b #7	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Cricetinae	ANCESTRAL SPECIES	40	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b #7	ENSGT00390000018759 #8	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	226	Scoc (ENSCGRG00001016489) #10	Clgn (ENSCGRG00001017080) #11	Mgat4d (ENSCGRG00001018073) #12	Elmod2 (ENSCGRG00001019628) #13	Ucp1 (ENSCGRG00001020013) #14	Tbc1d9 (ENSCGRG00001021936) #15	ENSCGRG00001016473 #16	ENSCGRG00001022655	Rnf150 (ENSCGRG00001022877) #17	ENSCGRG00001023417	ENSCGRG00001014103	Zfp330 (ENSCGRG00001001331) #18	Il15 (ENSCGRG00001010668) #19	Inpp4b (ENSCGRG00001016742) #20	Usp38 (ENSCGRG00001008922) #21	Gab1 (ENSCGRG00001010681) #22	Smarca5 (ENSCGRG00001012719) #23	Hhip (ENSCGRG00001017452) #26	ENSCGRG00001017973 #27	Abce1 (ENSCGRG00001000394) #28	Otud4 (ENSCGRG00001004451)	ENSCGRG00001006596 #30	Mmaa (ENSCGRG00001013056) #31	ENSCGRG00001014492	1700011L22Rik (ENSCGRG00001015849) #32	Zfp827 (ENSCGRG00001020514) #33	Lsm6 (ENSCGRG00001017142) #34	Slc10a7 (ENSCGRG00001018803) #35	ENSCGRG00001013716 #36	Pou4f2 (ENSCGRG00001001534) #37	Ttc29 (ENSCGRG00001003512)
Golden Hamster	MODERN SPECIES	692				Tecr (ENSMAUG00000016937) #7	Ndufb7 (ENSMAUG00000000462) #8	ENSMAUG00000011485	Clgn (ENSMAUG00000018981) #11	Mgat4d (ENSMAUG00000008813) #12	Elmod2 (ENSMAUG00000017426) #13	Ucp1 (ENSMAUG00000001700) #14	Tbc1d9 (ENSMAUG00000007342) #15	ENSMAUG00000000314 #18	ENSMAUG00000003125	Inpp4b (ENSMAUG00000006303) #20	Usp38 (ENSMAUG00000015498) #21	Gab1 (ENSMAUG00000009430) #22	Smarca5 (ENSMAUG00000015902) #23	Hhip (ENSMAUG00000012341) #26	ENSMAUG00000014510 #27	ENSMAUG00000006512 #28	Otud4 (ENSMAUG00000000475)	ENSMAUG00000020567	Smad1 (ENSMAUG00000020113) #30	Mmaa (ENSMAUG00000014130) #31	1700011L22Rik (ENSMAUG00000016201) #32	Zfp827 (ENSMAUG00000012963) #33	Lsm6 (ENSMAUG00000014938) #34	Slc10a7 (ENSMAUG00000019575) #35	ENSMAUG00000016659 #36	Pou4f2 (ENSMAUG00000018882) #37	Ttc29 (ENSMAUG00000010655)
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000160312	ENSGT00950000182886.a.a.b #7	ENSGT00390000018759 #8	ENSGT00940000161377 #9	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000153425.a.a.b.a #36	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Northern American deer mouse	MODERN SPECIES	18	Or10k2 (ENSPEMG00000027328) #9	Scoc (ENSPEMG00000024835) #10	Clgn (ENSPEMG00000023114) #11	Mgat4d (ENSPEMG00000022918) #12	Elmod2 (ENSPEMG00000028361) #13	Ucp1 (ENSPEMG00000022488) #14	ENSPEMG00000024217	Tbc1d9 (ENSPEMG00000024048) #15	ENSPEMG00000026256	ENSPEMG00000030162	Rnf150 (ENSPEMG00000008599) #17	Zfp330 (ENSPEMG00000022167) #18	Il15 (ENSPEMG00000029894) #19	Inpp4b (ENSPEMG00000005790) #20	Usp38 (ENSPEMG00000017993) #21	Gab1 (ENSPEMG00000011664) #22	Smarca5 (ENSPEMG00000008060) #23	Hhip (ENSPEMG00000020265) #26	ENSPEMG00000027237	Anapc10 (ENSPEMG00000020210) #27	ENSPEMG00000025681	Abce1 (ENSPEMG00000020086) #28	Otud4 (ENSPEMG00000000203)	Smad1 (ENSPEMG00000018411) #30	Mmaa (ENSPEMG00000017778) #31	1700011L22Rik (ENSPEMG00000017156) #32	Zfp827 (ENSPEMG00000014314) #33	Lsm6 (ENSPEMG00000012410) #34	Slc10a7 (ENSPEMG00000009109) #35	ENSPEMG00000006082 #36	Pou4f2 (ENSPEMG00000027953) #37
Prairie vole	MODERN SPECIES	134			Tmem184c (ENSMOCG00000000751)	Scoc (ENSMOCG00000017671) #10	Clgn (ENSMOCG00000016553) #11	Mgat4d (ENSMOCG00000002514) #12	Elmod2 (ENSMOCG00000011005) #13	Ucp1 (ENSMOCG00000010167) #14	Tbc1d9 (ENSMOCG00000005207) #15	Rnf150 (ENSMOCG00000000137) #17	Zfp330 (ENSMOCG00000020520) #18	ENSMOCG00000013054	Inpp4b (ENSMOCG00000010527) #20	ENSMOCG00000003479	Usp38 (ENSMOCG00000000267) #21	Gab1 (ENSMOCG00000013817) #22
Upper Galilee mountains blind mole rat	MODERN SPECIES	1233	Mgst2 (ENSNGAG00000017878)	Maml3 (ENSNGAG00000020253)	Scoc (ENSNGAG00000011163) #10	Clgn (ENSNGAG00000013400) #11	Mgat4d (ENSNGAG00000019938) #12	Elmod2 (ENSNGAG00000001153) #13	Ucp1 (ENSNGAG00000003442) #14	Tbc1d9 (ENSNGAG00000007389) #15	Rnf150 (ENSNGAG00000018575) #17	ENSNGAG00000001858	Zfp330 (ENSNGAG00000004253) #18	ENSNGAG00000003516	Inpp4b (ENSNGAG00000004652) #20	ENSNGAG00000017839	Usp38 (ENSNGAG00000020013) #21	Gab1 (ENSNGAG00000015926) #22	Smarca5 (ENSNGAG00000000441) #23	ENSNGAG00000009664	Fstl5 (ENSNGAG00000018141)
Lesser Egyptian jerboa	MODERN SPECIES	57	Noct (ENSJJAG00000019776)	Elf2 (ENSJJAG00000001703)	Rab33b (ENSJJAG00000023756)	Setd7 (ENSJJAG00000006328)	Mgst2 (ENSJJAG00000009542)	Maml3 (ENSJJAG00000021946)	Mgat4d (ENSJJAG00000009209) #12	Elmod2 (ENSJJAG00000018795) #13	Ucp1 (ENSJJAG00000019452) #14	Tbc1d9 (ENSJJAG00000012857) #15	Rnf150 (ENSJJAG00000016691) #17	ENSJJAG00000023235 #18	Il15 (ENSJJAG00000000182) #19	Inpp4b (ENSJJAG00000011391) #20	ENSJJAG00000017034	Gab1 (ENSJJAG00000023862) #22	Smarca5 (ENSJJAG00000014965) #23	ENSJJAG00000016555	Ednra (ENSJJAG00000019465)	Ttc29 (ENSJJAG00000021357)	ENSJJAG00000020665	Pou4f2 (ENSJJAG00000022187) #37	Slc10a7 (ENSJJAG00000020694) #35	ENSJJAG00000013845 #34	ENSJJAG00000019609 #33	Mmaa (ENSJJAG00000012406) #31	ENSJJAG00000019141 #30	Otud4 (ENSJJAG00000011777)	Hhip (ENSJJAG00000012058) #26	Prmt9 (ENSJJAG00000022258)	Arhgap10 (ENSJJAG00000024127)
Kangaroo rat	MODERN SPECIES	438	Rab33b (ENSDORG00000023618)	Setd7 (ENSDORG00000004857)	Mgst2 (ENSDORG00000009124)	ENSDORG00000009125	Scoc (ENSDORG00000028512) #10	Clgn (ENSDORG00000000175) #11	Elmod2 (ENSDORG00000026741) #13	Ucp1 (ENSDORG00000001952) #14	Tbc1d9 (ENSDORG00000001961) #15	Rnf150 (ENSDORG00000012239) #17	Zfp330 (ENSDORG00000010322) #18	Il15 (ENSDORG00000014153) #19	Inpp4b (ENSDORG00000014154) #20	ENSDORG00000023817	Usp38 (ENSDORG00000004940) #21	Gab1 (ENSDORG00000015902) #22	Smarca5 (ENSDORG00000003466) #23	Hhip (ENSDORG00000016419) #26	ENSDORG00000016690 #27	Abce1 (ENSDORG00000016691) #28	Otud4 (ENSDORG00000016692)	Smad1 (ENSDORG00000008067) #30	ENSDORG00000008070 #31	Zfp827 (ENSDORG00000008073) #33	Lsm6 (ENSDORG00000000933) #34	Slc10a7 (ENSDORG00000001306) #35	Pou4f2 (ENSDORG00000004448) #37	Ttc29 (ENSDORG00000001176)	Ednra (ENSDORG00000014305)	ENSDORG00000028284	Prmt9 (ENSDORG00000010111)
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Hystricomorpha	ANCESTRAL SPECIES	38										ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00510000047351.b	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722.a.a #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b.d
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000160791.A	ENSGT00940000155694	ENSGT00390000018433.s.b	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000154895.a.a	ENSGT00390000010038	ENSGT00940000159333	ENSGT00940000159559	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00510000047351.b	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722.a.a #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b.d
Hystricomorpha_b	ANCESTRAL SPECIES	89	ENSGT00940000160791.A	ENSGT00940000155694	ENSGT00390000018433.s.b	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000154895.a.a	ENSGT00390000010038	ENSGT00940000159333	ENSGT00940000159559	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22
Long-tailed chinchilla	MODERN SPECIES	178	MAB21L2 (ENSCLAG00000017837)	LRBA (ENSCLAG00000009578)	DCLK2 (ENSCLAG00000009217)	IQCM (ENSCLAG00000008040)	NR3C2 (ENSCLAG00000007723)	ARHGAP10 (ENSCLAG00000007081)	ENSCLAG00000006732	LRAT (ENSCLAG00000006584)	ENSCLAG00000005907	TBC1D9 (ENSCLAG00000005220) #15	RNF150 (ENSCLAG00000004503) #17	ZNF330 (ENSCLAG00000004258) #18	IL15 (ENSCLAG00000004056) #19	INPP4B (ENSCLAG00000007216) #20	USP38 (ENSCLAG00000014109) #21	GAB1 (ENSCLAG00000005522) #22
Degu	MODERN SPECIES	301											RNF150 (ENSODEG00000001391) #17	ENSODEG00000000107 #18	IL15 (ENSODEG00000000125) #19	INPP4B (ENSODEG00000000245) #20	USP38 (ENSODEG00000000359) #21	GAB1 (ENSODEG00000000395) #22
Guinea pig	MODERN SPECIES	7	PRSS48 (ENSCPOG00000000281)	SH3D19 (ENSCPOG00000008883)	RPS3A (ENSCPOG00000015569)	MAB21L2 (ENSCPOG00000034419)	LRBA (ENSCPOG00000008202)	DCLK2 (ENSCPOG00000008193)	IQCM (ENSCPOG00000022670)	NR3C2 (ENSCPOG00000007770)	ARHGAP10 (ENSCPOG00000007759)	TBC1D9 (ENSCPOG00000007373) #15	RNF150 (ENSCPOG00000004096) #17	ZNF330 (ENSCPOG00000011875) #18	IL15 (ENSCPOG00000008232) #19	INPP4B (ENSCPOG00000026234) #20	USP38 (ENSCPOG00000008971) #21	GAB1 (ENSCPOG00000031770) #22	LRAT (ENSCPOG00000034177)	FREM3 (ENSCPOG00000038428) #24	HHIP (ENSCPOG00000023375) #26	ENSCPOG00000031256	ANAPC10 (ENSCPOG00000032592) #27	ABCE1 (ENSCPOG00000007367) #28	OTUD4 (ENSCPOG00000007371)	SMAD1 (ENSCPOG00000009073) #30	MMAA (ENSCPOG00000004149) #31	ZNF827 (ENSCPOG00000009087) #33	LSM6 (ENSCPOG00000032655) #34	SLC10A7 (ENSCPOG00000015391) #35	POU4F2 (ENSCPOG00000013770) #37	TTC29 (ENSCPOG00000007443)	ENSCPOG00000040663
Naked mole-rat female	MODERN SPECIES	22	RNF150 (ENSHGLG00000000594) #17	ENSHGLG00000048416	ZNF330 (ENSHGLG00000000725) #18	ENSHGLG00000042945	ENSHGLG00000007865	IL15 (ENSHGLG00000038275) #19	ENSHGLG00000047631	ENSHGLG00000001548	ENSHGLG00000019770	ENSHGLG00000049550	ENSHGLG00000042451	ENSHGLG00000000870 #20	ENSHGLG00000049616	ENSHGLG00000001875 #21	ENSHGLG00000038593	ENSHGLG00000002344 #22	ENSHGLG00000032409	LRAT (ENSHGLG00000045268)	ENSHGLG00000000458	ENSHGLG00000000499 #26	ENSHGLG00000001008	ENSHGLG00000041757	ENSHGLG00000048241	ANAPC10 (ENSHGLG00000038398) #27	ABCE1 (ENSHGLG00000001909) #28	ENSHGLG00000046999	ENSHGLG00000050361	ENSHGLG00000000238 #30	MMAA (ENSHGLG00000043526) #31	ZNF827 (ENSHGLG00000002037) #33	ENSHGLG00000032143
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00960000191551	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Marmotini	ANCESTRAL SPECIES	45	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00960000191551	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Marmotini_b	ANCESTRAL SPECIES	115	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828.bb.a.a #10	ENSGT00390000008828.bb.a.b #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00960000191551	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Arctic ground squirrel	MODERN SPECIES	107															USP38 (ENSUPAG00010000887) #21	GAB1 (ENSUPAG00010000769) #22	ENSUPAG00010000759	SMARCA5 (ENSUPAG00010000746) #23	FREM3 (ENSUPAG00010000720) #24	ENSUPAG00010000702	HHIP (ENSUPAG00010000675) #26	ANAPC10 (ENSUPAG00010000613) #27	ABCE1 (ENSUPAG00010000589) #28	OTUD4 (ENSUPAG00010000528)	ENSUPAG00010000524	SMAD1 (ENSUPAG00010000470) #30	MMAA (ENSUPAG00010000442) #31	ZNF827 (ENSUPAG00010000383) #33	LSM6 (ENSUPAG00010000353) #34	REELD1 (ENSUPAG00010000334)	SLC10A7 (ENSUPAG00010000172) #35
Squirrel	MODERN SPECIES	135	RAB33B (ENSSTOG00000027511)	SETD7 (ENSSTOG00000004420)	MGST2 (ENSSTOG00000004437)	MAML3 (ENSSTOG00000004454)	ENSSTOG00000028529 #10	CLGN (ENSSTOG00000003055) #11	MGAT4D (ENSSTOG00000030895) #12	ELMOD2 (ENSSTOG00000022401) #13	UCP1 (ENSSTOG00000003104) #14	TBC1D9 (ENSSTOG00000001453) #15	RNF150 (ENSSTOG00000029908) #17	ZNF330 (ENSSTOG00000002498) #18	IL15 (ENSSTOG00000005776) #19	INPP4B (ENSSTOG00000005582) #20	USP38 (ENSSTOG00000025902) #21	GAB1 (ENSSTOG00000027891) #22	SMARCA5 (ENSSTOG00000010683) #23	FREM3 (ENSSTOG00000026754) #24	HHIP (ENSSTOG00000006708) #26	ENSSTOG00000022563	ANAPC10 (ENSSTOG00000007739) #27	ABCE1 (ENSSTOG00000004621) #28	OTUD4 (ENSSTOG00000004649)	SMAD1 (ENSSTOG00000010836) #30	MMAA (ENSSTOG00000010843) #31	ZNF827 (ENSSTOG00000007761) #33	LSM6 (ENSSTOG00000002678) #34	ENSSTOG00000030757	SLC10A7 (ENSSTOG00000023850) #35	POU4F2 (ENSSTOG00000021113) #37	TTC29 (ENSSTOG00000003372)
Alpin marmot	MODERN SPECIES	14					MGAT4D (ENSMMMG00000000565) #12	ELMOD2 (ENSMMMG00000000593) #13	UCP1 (ENSMMMG00000000628) #14	TBC1D9 (ENSMMMG00000000662) #15	RNF150 (ENSMMMG00000000771) #17	ZNF330 (ENSMMMG00000000807) #18	IL15 (ENSMMMG00000000844) #19	INPP4B (ENSMMMG00000000910) #20	ENSMMMG00000001088	ENSMMMG00000001108	USP38 (ENSMMMG00000001127) #21	GAB1 (ENSMMMG00000001157) #22	ENSMMMG00000001200	SMARCA5 (ENSMMMG00000001227) #23	FREM3 (ENSMMMG00000001322) #24	ENSMMMG00000001356	HHIP (ENSMMMG00000001370) #26	ANAPC10 (ENSMMMG00000001410) #27	ABCE1 (ENSMMMG00000001426) #28	OTUD4 (ENSMMMG00000001476)	SMAD1 (ENSMMMG00000001530) #30	MMAA (ENSMMMG00000001552) #31	ZNF827 (ENSMMMG00000001587) #33	LSM6 (ENSMMMG00000001638) #34	REELD1 (ENSMMMG00000001660)	SLC10A7 (ENSMMMG00000001688) #35	ENSMMMG00000001799
Eurasian red squirrel	MODERN SPECIES	18	NAA15 (ENSSVLG00005007200)	RAB33B (ENSSVLG00005007228)	SETD7 (ENSSVLG00005007262)	MAML3 (ENSSVLG00005007329)	SCOC (ENSSVLG00005007378) #10	CLGN (ENSSVLG00005007446) #11	MGAT4D (ENSSVLG00005007541) #12	ELMOD2 (ENSSVLG00005007698) #13	UCP1 (ENSSVLG00005007755) #14	TBC1D9 (ENSSVLG00005007825) #15	RNF150 (ENSSVLG00005007968) #17	ZNF330 (ENSSVLG00005008101) #18	IL15 (ENSSVLG00005008140) #19	INPP4B (ENSSVLG00005008272) #20	USP38 (ENSSVLG00005008534) #21	GAB1 (ENSSVLG00005008645) #22	SMARCA5 (ENSSVLG00005008713) #23	FREM3 (ENSSVLG00005008764) #24	ENSSVLG00005008869	HHIP (ENSSVLG00005009063) #26	ANAPC10 (ENSSVLG00005009144) #27	ENSSVLG00005009213 #28	ENSSVLG00005009329	ENSSVLG00005009597 #30	ENSSVLG00005009634	MMAA (ENSSVLG00005009664) #31	C4orf51 (ENSSVLG00005009715) #32	ZNF827 (ENSSVLG00005009794) #33	LSM6 (ENSSVLG00005009971) #34	REELD1 (ENSSVLG00005010007)	SLC10A7 (ENSSVLG00005010105) #35
Lagomorpha	ANCESTRAL SPECIES	69	ENSGT00950000183174.B.a	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Rabbit	MODERN SPECIES	6	ENSOCUG00000023227	ENSOCUG00000006591 #10	CLGN (ENSOCUG00000006597) #11	MGAT4D (ENSOCUG00000006809) #12	ELMOD2 (ENSOCUG00000006810) #13	UCP1 (ENSOCUG00000002297) #14	TBC1D9 (ENSOCUG00000005559) #15	RNF150 (ENSOCUG00000013467) #17	ZNF330 (ENSOCUG00000014580) #18	ENSOCUG00000038390	IL15 (ENSOCUG00000008827) #19	ENSOCUG00000036398	INPP4B (ENSOCUG00000005896) #20	ENSOCUG00000033027	USP38 (ENSOCUG00000011524) #21	GAB1 (ENSOCUG00000003271) #22	SMARCA5 (ENSOCUG00000013042) #23	FREM3 (ENSOCUG00000017497) #24	ENSOCUG00000022208	ENSOCUG00000038022	ENSOCUG00000025017	ENSOCUG00000022002	HHIP (ENSOCUG00000004959) #26	ANAPC10 (ENSOCUG00000001819) #27	ENSOCUG00000001821 #28	OTUD4 (ENSOCUG00000014569)	SMAD1 (ENSOCUG00000017920) #30	MMAA (ENSOCUG00000016139) #31	ZNF827 (ENSOCUG00000002055) #33	LSM6 (ENSOCUG00000017495) #34	REELD1 (ENSOCUG00000034608)
Pika	MODERN SPECIES	165																GAB1 (ENSOPRG00000015330) #22
Tree shrew	MODERN SPECIES	295																GAB1 (ENSTBEG00000005121) #22	ENSTBEG00000006048
Primates	ANCESTRAL SPECIES	10	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Haplorrhini	ANCESTRAL SPECIES	20	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00390000008403.z	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722.m.a #27	ENSGT00390000015089.c #28	ENSGT00940000160512.a	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00390000008403.z	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277
Hominidae	ANCESTRAL SPECIES	12	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722.m.a #27	ENSGT00390000015089.c #28	ENSGT00940000160512.a	ENSGT00940000154391.a.a #30	ENSGT00390000008403.z	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214.b #25	ENSGT00550000075214.a #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722.m.a #27	ENSGT00390000015089.c.c #28	ENSGT00940000160512.a	ENSGT00940000154391.a.a #30	ENSGT00390000008403.z	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214.b.b #25	ENSGT00550000075214.b.a #25	ENSGT00550000075214.a #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722.m.a #27	ENSGT00390000015089.c.c #28	ENSGT00940000160512.a	ENSGT00940000154391.a.a #30	ENSGT00390000008403.z	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33
Pan	ANCESTRAL SPECIES	7	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214.b.b #25	ENSGT00550000075214.b.a #25	ENSGT00550000075214.a.a #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722.m.a #27	ENSGT00390000015089.c.c #28	ENSGT00940000160512.a	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00390000008403.z	ENSGT00520000060562 #32	ENSGT00940000156063 #33
Chimpanzee	MODERN SPECIES	17	ENSPTRG00000051753	MGST2 (ENSPTRG00000016457)	MAML3 (ENSPTRG00000016459)	SCOC (ENSPTRG00000016460) #10	ENSPTRG00000045152	CLGN (ENSPTRG00000049174) #11	MGAT4D (ENSPTRG00000031089) #12	ELMOD2 (ENSPTRG00000016462) #13	UCP1 (ENSPTRG00000016463) #14	TBC1D9 (ENSPTRG00000016464) #15	RNF150 (ENSPTRG00000016465) #17	ZNF330 (ENSPTRG00000016466) #18	IL15 (ENSPTRG00000016467) #19	INPP4B (ENSPTRG00000016469) #20	USP38 (ENSPTRG00000016470) #21	GAB1 (ENSPTRG00000016471) #22	ENSPTRG00000044130	SMARCA5 (ENSPTRG00000016472) #23	FREM3 (ENSPTRG00000016474) #24	ENSPTRG00000038865 #25	ENSPTRG00000046937	ENSPTRG00000034083 #25	ENSPTRG00000047026 #25	GYPA (ENSPTRG00000016478) #25	HHIP (ENSPTRG00000016479) #26	ANAPC10 (ENSPTRG00000016480) #27	ABCE1 (ENSPTRG00000016481) #28	OTUD4 (ENSPTRG00000016482)	ENSPTRG00000041132	SMAD1 (ENSPTRG00000016485) #30	MMAA (ENSPTRG00000016486) #31
Bonobo	MODERN SPECIES	17	MGST2 (ENSPPAG00000034504)	MAML3 (ENSPPAG00000002376)	ENSPPAG00000042997 #10	ENSPPAG00000033463	CLGN (ENSPPAG00000040396) #11	MGAT4D (ENSPPAG00000036062) #12	ELMOD2 (ENSPPAG00000042771) #13	UCP1 (ENSPPAG00000027664) #14	TBC1D9 (ENSPPAG00000029993) #15	RNF150 (ENSPPAG00000032316) #17	ZNF330 (ENSPPAG00000040018) #18	IL15 (ENSPPAG00000043501) #19	ENSPPAG00000041816	INPP4B (ENSPPAG00000042739) #20	USP38 (ENSPPAG00000041444) #21	GAB1 (ENSPPAG00000039393) #22	ENSPPAG00000039385	SMARCA5 (ENSPPAG00000028523) #23	FREM3 (ENSPPAG00000029454) #24	GYPB (ENSPPAG00000042513) #25	GYPA (ENSPPAG00000042526) #25	HHIP (ENSPPAG00000032784) #26	ENSPPAG00000034777	ANAPC10 (ENSPPAG00000034191) #27	ABCE1 (ENSPPAG00000011660) #28	OTUD4 (ENSPPAG00000025977)	ENSPPAG00000027561	SMAD1 (ENSPPAG00000027603) #30	MMAA (ENSPPAG00000031747) #31	ENSPPAG00000023693	C4orf51 (ENSPPAG00000040867) #32
Human	MODERN SPECIES	16	RAB33B (ENSG00000172007)	SETD7 (ENSG00000145391)	MGST2 (ENSG00000085871)	MAML3 (ENSG00000196782)	SCOC (ENSG00000153130) #10	CLGN (ENSG00000153132) #11	MGAT4D (ENSG00000205301) #12	ELMOD2 (ENSG00000179387) #13	UCP1 (ENSG00000109424) #14	TBC1D9 (ENSG00000109436) #15	RNF150 (ENSG00000170153) #17	ZNF330 (ENSG00000109445) #18	IL15 (ENSG00000164136) #19	INPP4B (ENSG00000109452) #20	USP38 (ENSG00000170185) #21	GAB1 (ENSG00000109458) #22	SMARCA5 (ENSG00000153147) #23	FREM3 (ENSG00000183090) #24	GYPE (ENSG00000197465) #25	GYPB (ENSG00000250361) #25	GYPA (ENSG00000170180) #25	HHIP (ENSG00000164161) #26	ANAPC10 (ENSG00000164162) #27	ABCE1 (ENSG00000164163) #28	OTUD4 (ENSG00000164164)	SMAD1 (ENSG00000170365) #30	MMAA (ENSG00000151611) #31	C4orf51 (ENSG00000237136) #32	ZNF827 (ENSG00000151612) #33	LSM6 (ENSG00000164167) #34	REELD1 (ENSG00000250673)
Gorilla	MODERN SPECIES	17	ENSGGOG00000044183	ENSGGOG00000040366	MGST2 (ENSGGOG00000004989)	ENSGGOG00000010453	ENSGGOG00000028186 #10	CLGN (ENSGGOG00000006153) #11	MGAT4D (ENSGGOG00000027687) #12	ELMOD2 (ENSGGOG00000024299) #13	UCP1 (ENSGGOG00000023085) #14	TBC1D9 (ENSGGOG00000006878) #15	RNF150 (ENSGGOG00000023601) #17	ZNF330 (ENSGGOG00000006078) #18	IL15 (ENSGGOG00000011285) #19	INPP4B (ENSGGOG00000027193) #20	USP38 (ENSGGOG00000002044) #21	GAB1 (ENSGGOG00000000020) #22	SMARCA5 (ENSGGOG00000012595) #23	FREM3 (ENSGGOG00000008352) #24	GYPA (ENSGGOG00000015552) #25	HHIP (ENSGGOG00000013359) #26	ENSGGOG00000038059	ANAPC10 (ENSGGOG00000025091) #27	ABCE1 (ENSGGOG00000022726) #28	ENSGGOG00000002462	SMAD1 (ENSGGOG00000022121) #30	MMAA (ENSGGOG00000002558) #31	C4orf51 (ENSGGOG00000038659) #32	ZNF827 (ENSGGOG00000004696) #33	LSM6 (ENSGGOG00000001310) #34	REELD1 (ENSGGOG00000043474)	ENSGGOG00000034808 #35
Orangutan	MODERN SPECIES	17	SETD7 (ENSPPYG00000015073)	ENSPPYG00000038857	MGST2 (ENSPPYG00000015074)	MAML3 (ENSPPYG00000015075)	ENSPPYG00000033334 #10	CLGN (ENSPPYG00000015078) #11	MGAT4D (ENSPPYG00000015079) #12	ELMOD2 (ENSPPYG00000015080) #13	UCP1 (ENSPPYG00000015081) #14	TBC1D9 (ENSPPYG00000015082) #15	RNF150 (ENSPPYG00000015083) #17	ZNF330 (ENSPPYG00000015084) #18	IL15 (ENSPPYG00000015085) #19	INPP4B (ENSPPYG00000015086) #20	USP38 (ENSPPYG00000015088) #21	GAB1 (ENSPPYG00000015090) #22	SMARCA5 (ENSPPYG00000015091) #23	FREM3 (ENSPPYG00000015093) #24	ENSPPYG00000015094 #25	HHIP (ENSPPYG00000015095) #26	ANAPC10 (ENSPPYG00000037049) #27	ABCE1 (ENSPPYG00000015097) #28	OTUD4 (ENSPPYG00000015098)	ENSPPYG00000038758	SMAD1 (ENSPPYG00000038063) #30	MMAA (ENSPPYG00000015103) #31	C4orf51 (ENSPPYG00000032371) #32	ENSPPYG00000015104 #33	LSM6 (ENSPPYG00000031358) #34	REELD1 (ENSPPYG00000038439)	SLC10A7 (ENSPPYG00000015106) #35
Gibbon	MODERN SPECIES	22	MGST2 (ENSNLEG00000005071)	ENSNLEG00000029158	MAML3 (ENSNLEG00000005077)	ENSNLEG00000034591	ENSNLEG00000028161 #10	ENSNLEG00000033539	CLGN (ENSNLEG00000005101) #11	ELMOD2 (ENSNLEG00000005149) #13	UCP1 (ENSNLEG00000005170) #14	TBC1D9 (ENSNLEG00000005185) #15	RNF150 (ENSNLEG00000005230) #17	ZNF330 (ENSNLEG00000033135) #18	IL15 (ENSNLEG00000005257) #19	INPP4B (ENSNLEG00000005284) #20	USP38 (ENSNLEG00000005343) #21	GAB1 (ENSNLEG00000005366) #22	SMARCA5 (ENSNLEG00000005383) #23	FREM3 (ENSNLEG00000005425) #24	ENSNLEG00000032234 #25	HHIP (ENSNLEG00000005430) #26	ANAPC10 (ENSNLEG00000005453) #27	ENSNLEG00000005460 #28	OTUD4 (ENSNLEG00000005494)	SMAD1 (ENSNLEG00000005537) #30	MMAA (ENSNLEG00000032493) #31	ENSNLEG00000029298	ENSNLEG00000018924	C4orf51 (ENSNLEG00000005557) #32	ZNF827 (ENSNLEG00000005560) #33	LSM6 (ENSNLEG00000005584) #34	REELD1 (ENSNLEG00000035386)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00390000008403.z	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.i.b #34	ENSGT00940000163277
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00390000008403.z	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.i.b #34	ENSGT00940000163277
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00390000003582.f.c	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00390000002615.o.b	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00390000008403.z	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.i.b #34
Macaca	ANCESTRAL SPECIES	18	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00390000003582.f.c	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00390000001958.t.a.h	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00390000002615.o.b	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00390000008403.z	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.i.b #34
Pig-tailed macaque	MODERN SPECIES	201	MGST2 (ENSMNEG00000035368)	MAML3 (ENSMNEG00000040179)	SCOC (ENSMNEG00000045271) #10	CLGN (ENSMNEG00000026848) #11	MGAT4D (ENSMNEG00000031956) #12	ELMOD2 (ENSMNEG00000000643) #13	UCP1 (ENSMNEG00000034442) #14	ENSMNEG00000037749	TBC1D9 (ENSMNEG00000041392) #15	ENSMNEG00000036378	RNF150 (ENSMNEG00000042816) #17	ZNF330 (ENSMNEG00000034157) #18	IL15 (ENSMNEG00000040041) #19	INPP4B (ENSMNEG00000033774) #20	USP38 (ENSMNEG00000034149) #21	GAB1 (ENSMNEG00000032328) #22	SMARCA5 (ENSMNEG00000031916) #23
Macaca_a	ANCESTRAL SPECIES	12	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00390000003582.e.c.c.b	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00390000001958.t.a.h	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.b.b	ENSGT00940000154978.i.b #34	ENSGT00940000163277
Crab-eating macaque	MODERN SPECIES	15	ENSMFAG00000058013	ENSMFAG00000001579 #10	CLGN (ENSMFAG00000044499) #11	MGAT4D (ENSMFAG00000036899) #12	ENSMFAG00000052917 #13	ELMOD2 (ENSMFAG00000046408) #13	UCP1 (ENSMFAG00000043786) #14	TBC1D9 (ENSMFAG00000046063) #15	ENSMFAG00000051743	RNF150 (ENSMFAG00000041541) #17	ZNF330 (ENSMFAG00000030809) #18	IL15 (ENSMFAG00000043515) #19	INPP4B (ENSMFAG00000004754) #20	ENSMFAG00000048249	USP38 (ENSMFAG00000031506) #21	GAB1 (ENSMFAG00000044011) #22	SMARCA5 (ENSMFAG00000043649) #23	FREM3 (ENSMFAG00000038207) #24	ENSMFAG00000003962 #25	HHIP (ENSMFAG00000040378) #26	ENSMFAG00000053399	ANAPC10 (ENSMFAG00000001142) #27	ABCE1 (ENSMFAG00000038310) #28	OTUD4 (ENSMFAG00000045984)	ENSMFAG00000058203	SMAD1 (ENSMFAG00000037774) #30	MMAA (ENSMFAG00000032212) #31	ENSMFAG00000050038	C4orf51 (ENSMFAG00000062382) #32	ZNF827 (ENSMFAG00000038497) #33	ENSMFAG00000065069
Rhesus	MODERN SPECIES	15	MGST2 (ENSMMUG00000021999)	MAML3 (ENSMMUG00000021998)	ENSMMUG00000063075	ENSMMUG00000053045 #10	CLGN (ENSMMUG00000022355) #11	MGAT4D (ENSMMUG00000030139) #12	ELMOD2 (ENSMMUG00000015242) #13	UCP1 (ENSMMUG00000015244) #14	TBC1D9 (ENSMMUG00000015246) #15	ENSMMUG00000054844	RNF150 (ENSMMUG00000010444) #17	ZNF330 (ENSMMUG00000060157) #18	IL15 (ENSMMUG00000019092) #19	INPP4B (ENSMMUG00000003697) #20	USP38 (ENSMMUG00000000827) #21	GAB1 (ENSMMUG00000000828) #22	SMARCA5 (ENSMMUG00000000829) #23	FREM3 (ENSMMUG00000003319) #24	ENSMMUG00000044429 #25	ENSMMUG00000014173	HHIP (ENSMMUG00000007968) #26	ANAPC10 (ENSMMUG00000004432) #27	ABCE1 (ENSMMUG00000004433) #28	OTUD4 (ENSMMUG00000004437)	ENSMMUG00000064578	SMAD1 (ENSMMUG00000018384) #30	MMAA (ENSMMUG00000005382) #31	C5H4orf51 (ENSMMUG00000039875) #32	ZNF827 (ENSMMUG00000005380) #33	ENSMMUG00000050323	LSM6 (ENSMMUG00000057637) #34
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00390000003582.f.c	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00390000002615.o.b	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.i.b #34	ENSGT00940000163277
Cercopithecinae_d	ANCESTRAL SPECIES	21	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000007888.c.b.g.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00390000003582.f.c	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000005727.a.b.a.a.d	ENSGT00390000013722 #27	ENSGT00390000015089.c #28	ENSGT00940000160512	ENSGT00390000002615.o.b	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.i.b #34	ENSGT00940000163277
Drill	MODERN SPECIES	945															USP38 (ENSMLEG00000035914) #21	GAB1 (ENSMLEG00000032401) #22	SMARCA5 (ENSMLEG00000042393) #23	FREM3 (ENSMLEG00000029008) #24	ENSMLEG00000029837 #25	HHIP (ENSMLEG00000029460) #26	ENSMLEG00000036343	ANAPC10 (ENSMLEG00000041302) #27	ABCE1 (ENSMLEG00000038260) #28	OTUD4 (ENSMLEG00000019778)	ENSMLEG00000029260	SMAD1 (ENSMLEG00000033974) #30	MMAA (ENSMLEG00000025474) #31	C4orf51 (ENSMLEG00000037874) #32	ZNF827 (ENSMLEG00000032085) #33	LSM6 (ENSMLEG00000035153) #34	REELD1 (ENSMLEG00000039176)
Sooty mangabey	MODERN SPECIES	575	MGST2 (ENSCATG00000044814)	MAML3 (ENSCATG00000029477)	ENSCATG00000035949	SCOC (ENSCATG00000045036) #10	CLGN (ENSCATG00000034016) #11	MGAT4D (ENSCATG00000030864) #12	ELMOD2 (ENSCATG00000028878) #13	UCP1 (ENSCATG00000039147) #14	TBC1D9 (ENSCATG00000027992) #15	ENSCATG00000033922	RNF150 (ENSCATG00000036670) #17	ZNF330 (ENSCATG00000035879) #18	IL15 (ENSCATG00000042052) #19	INPP4B (ENSCATG00000042835) #20	USP38 (ENSCATG00000040394) #21	GAB1 (ENSCATG00000018732) #22	SMARCA5 (ENSCATG00000044917) #23	FREM3 (ENSCATG00000039679) #24	ENSCATG00000036237 #25	HHIP (ENSCATG00000035139) #26	ENSCATG00000034430	ANAPC10 (ENSCATG00000038918) #27	ABCE1 (ENSCATG00000036545) #28	OTUD4 (ENSCATG00000030428)	ENSCATG00000044949	SMAD1 (ENSCATG00000040644) #30	MMAA (ENSCATG00000031114) #31	C4orf51 (ENSCATG00000019996) #32	ZNF827 (ENSCATG00000042669) #33	ENSCATG00000016631	LSM6 (ENSCATG00000002770) #34
Olive baboon	MODERN SPECIES	13	MGST2 (ENSPANG00000012875)	MAML3 (ENSPANG00000023379)	ENSPANG00000047009	SCOC (ENSPANG00000033516) #10	CLGN (ENSPANG00000012438) #11	MGAT4D (ENSPANG00000021633) #12	ELMOD2 (ENSPANG00000022482) #13	UCP1 (ENSPANG00000019036) #14	TBC1D9 (ENSPANG00000016781) #15	ENSPANG00000030921	RNF150 (ENSPANG00000009678) #17	ZNF330 (ENSPANG00000039505) #18	IL15 (ENSPANG00000009677) #19	INPP4B (ENSPANG00000009842) #20	USP38 (ENSPANG00000008197) #21	GAB1 (ENSPANG00000009676) #22	SMARCA5 (ENSPANG00000001175) #23	FREM3 (ENSPANG00000006696) #24	ENSPANG00000021918 #25	ENSPANG00000044664	ENSPANG00000046087	ENSPANG00000045820	HHIP (ENSPANG00000012434) #26	ENSPANG00000048321	ANAPC10 (ENSPANG00000004188) #27	ABCE1 (ENSPANG00000005888) #28	OTUD4 (ENSPANG00000002435)	ENSPANG00000038099	SMAD1 (ENSPANG00000016688) #30	MMAA (ENSPANG00000010647) #31	C4orf51 (ENSPANG00000020589) #32
Vervet Monkey	MODERN SPECIES	26	NAA15 (ENSCSAG00000003534)	RAB33B (ENSCSAG00000003531)	SETD7 (ENSCSAG00000003529)	MGST2 (ENSCSAG00000003527)	MAML3 (ENSCSAG00000003524)	CLGN (ENSCSAG00000003520) #11	MGAT4D (ENSCSAG00000003516) #12	ELMOD2 (ENSCSAG00000003509) #13	UCP1 (ENSCSAG00000003508) #14	TBC1D9 (ENSCSAG00000003505) #15	ENSCSAG00000000390	ZNF330 (ENSCSAG00000003500) #18	IL15 (ENSCSAG00000003496) #19	INPP4B (ENSCSAG00000003489) #20	USP38 (ENSCSAG00000003455) #21	GAB1 (ENSCSAG00000003452) #22	SMARCA5 (ENSCSAG00000003448) #23	FREM3 (ENSCSAG00000003444) #24	ENSCSAG00000003442 #25	HHIP (ENSCSAG00000003439) #26	ANAPC10 (ENSCSAG00000003438) #27	ABCE1 (ENSCSAG00000003437) #28	OTUD4 (ENSCSAG00000003435)	SMAD1 (ENSCSAG00000003430) #30	MMAA (ENSCSAG00000003428) #31	C4orf51 (ENSCSAG00000003424) #32	ZNF827 (ENSCSAG00000003422) #33	LSM6 (ENSCSAG00000003421) #34	ENSCSAG00000003416	SLC10A7 (ENSCSAG00000003414) #35	POU4F2 (ENSCSAG00000003411) #37
Rhinopithecus	ANCESTRAL SPECIES	628															ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00910000147797	ENSGT01090000260070.A
Golden snub-nosed monkey	MODERN SPECIES	3122															USP38 (ENSRROG00000036566) #21	GAB1 (ENSRROG00000030069) #22	SMARCA5 (ENSRROG00000029591) #23	ENSRROG00000039590	ENSRROG00000030176
Black snub-nosed monkey	MODERN SPECIES	1727															USP38 (ENSRBIG00000034798) #21	GAB1 (ENSRBIG00000039258) #22	SMARCA5 (ENSRBIG00000044644) #23	FREM3 (ENSRBIG00000043128) #24	ENSRBIG00000035543	ENSRBIG00000013183	ENSRBIG00000036198 #25	ENSRBIG00000013900
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00830000128422.b	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722.`b.a #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.h.b #34	ENSGT00940000154978.h.a #34	ENSGT00940000163277	ENSGT00390000011932 #35
Cebidae	ANCESTRAL SPECIES	4	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00830000128422.b	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722.`b.a #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.h.b #34	ENSGT00940000154978.h.a #34	ENSGT00940000163277	ENSGT00390000011932 #35
Marmoset	MODERN SPECIES	15	ENSCJAG00000039765 #12	ELMOD2 (ENSCJAG00000003032) #13	UCP1 (ENSCJAG00000003017) #14	TBC1D9 (ENSCJAG00000002968) #15	RNF150 (ENSCJAG00000002960) #17	ZNF330 (ENSCJAG00000002931) #18	ENSCJAG00000069761	IL15 (ENSCJAG00000002909) #19	ENSCJAG00000065977	INPP4B (ENSCJAG00000002842) #20	ENSCJAG00000080009	ENSCJAG00000071544	USP38 (ENSCJAG00000002831) #21	ENSCJAG00000064145	ENSCJAG00000085872	GAB1 (ENSCJAG00000002803) #22	SMARCA5 (ENSCJAG00000002735) #23	FREM3 (ENSCJAG00000002729) #24	ENSCJAG00000086880	ENSCJAG00000002707 #25	HHIP (ENSCJAG00000002666) #26	ENSCJAG00000085953	ANAPC10 (ENSCJAG00000002663) #27	ABCE1 (ENSCJAG00000002636) #28	OTUD4 (ENSCJAG00000002563)	ENSCJAG00000068375	ENSCJAG00000071603	SMAD1 (ENSCJAG00000002542) #30	ENSCJAG00000054004	ENSCJAG00000053976	MMAA (ENSCJAG00000002525) #31
Cebidae_a	ANCESTRAL SPECIES	49	ENSGT00910000146867	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00830000128422.b	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722.`b.a #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.g #34	ENSGT00940000154978.h.a #34	ENSGT00940000163277	ENSGT00390000011932 #35
Bolivian squirrel monkey	MODERN SPECIES	68	ENSSBOG00000028958	MGST2 (ENSSBOG00000022825)	MAML3 (ENSSBOG00000035958)	SCOC (ENSSBOG00000029458) #10	CLGN (ENSSBOG00000030802) #11	MGAT4D (ENSSBOG00000028510) #12	ELMOD2 (ENSSBOG00000021628) #13	UCP1 (ENSSBOG00000026412) #14	TBC1D9 (ENSSBOG00000033747) #15	RNF150 (ENSSBOG00000021561) #17	ZNF330 (ENSSBOG00000033260) #18	IL15 (ENSSBOG00000023289) #19	INPP4B (ENSSBOG00000026274) #20	ENSSBOG00000029349	USP38 (ENSSBOG00000029166) #21	GAB1 (ENSSBOG00000036042) #22	SMARCA5 (ENSSBOG00000036257) #23	FREM3 (ENSSBOG00000024738) #24	ENSSBOG00000031076 #25	HHIP (ENSSBOG00000031611) #26	ANAPC10 (ENSSBOG00000028340) #27	ABCE1 (ENSSBOG00000026731) #28	OTUD4 (ENSSBOG00000026181)	SMAD1 (ENSSBOG00000032640) #30	MMAA (ENSSBOG00000024471) #31	C4orf51 (ENSSBOG00000033422) #32	ZNF827 (ENSSBOG00000021214) #33	ENSSBOG00000020157	ENSSBOG00000021229 #34	REELD1 (ENSSBOG00000016008)	SLC10A7 (ENSSBOG00000026776) #35
Capuchin	MODERN SPECIES	4	ENSCCAG00000020402	SCOC (ENSCCAG00000037302) #10	CLGN (ENSCCAG00000019261) #11	MGAT4D (ENSCCAG00000030185) #12	ELMOD2 (ENSCCAG00000028648) #13	UCP1 (ENSCCAG00000037986) #14	TBC1D9 (ENSCCAG00000032177) #15	RNF150 (ENSCCAG00000020786) #17	ZNF330 (ENSCCAG00000028900) #18	IL15 (ENSCCAG00000034837) #19	INPP4B (ENSCCAG00000036276) #20	ENSCCAG00000017228	ENSCCAG00000031159	USP38 (ENSCCAG00000036444) #21	ENSCCAG00000017579	GAB1 (ENSCCAG00000027991) #22	SMARCA5 (ENSCCAG00000027215) #23	FREM3 (ENSCCAG00000027764) #24	ENSCCAG00000035001 #25	HHIP (ENSCCAG00000026649) #26	ANAPC10 (ENSCCAG00000022970) #27	ENSCCAG00000021838	ABCE1 (ENSCCAG00000022952) #28	OTUD4 (ENSCCAG00000019901)	ENSCCAG00000035581	SMAD1 (ENSCCAG00000031698) #30	MMAA (ENSCCAG00000016061) #31	C4orf51 (ENSCCAG00000028054) #32	ZNF827 (ENSCCAG00000029509) #33	LSM6 (ENSCCAG00000036437) #34	REELD1 (ENSCCAG00000022602)
Mas night monkey	MODERN SPECIES	1091											IL15 (ENSANAG00000022052) #19	INPP4B (ENSANAG00000026584) #20	ENSANAG00000022060	ENSANAG00000022956	USP38 (ENSANAG00000027226) #21	GAB1 (ENSANAG00000029852) #22	SMARCA5 (ENSANAG00000019345) #23	ENSANAG00000030304 #25	HHIP (ENSANAG00000029482) #26	ENSANAG00000033809 #27	ENSANAG00000023180 #28	OTUD4 (ENSANAG00000025997)	SMAD1 (ENSANAG00000035908) #30	MMAA (ENSANAG00000027872) #31	C4orf51 (ENSANAG00000025562) #32	ZNF827 (ENSANAG00000030225) #33	ENSANAG00000030568 #34	REELD1 (ENSANAG00000025603)	SLC10A7 (ENSANAG00000025194) #35	POU4F2 (ENSANAG00000032317) #37	TTC29 (ENSANAG00000035099)
Tarsier	MODERN SPECIES	3963																GAB1 (ENSTSYG00000007295) #22
Strepsirrhini	ANCESTRAL SPECIES	32	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Lemuriformes	ANCESTRAL SPECIES	38	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.n #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Mouse lemur	MODERN SPECIES	5	MGST2 (ENSMICG00000007060)	MAML3 (ENSMICG00000033333)	SCOC (ENSMICG00000007077) #10	CLGN (ENSMICG00000007083) #11	MGAT4D (ENSMICG00000003973) #12	ELMOD2 (ENSMICG00000030808) #13	UCP1 (ENSMICG00000008999) #14	ENSMICG00000034102	TBC1D9 (ENSMICG00000009012) #15	RNF150 (ENSMICG00000009057) #17	ENSMICG00000044516	ZNF330 (ENSMICG00000027897) #18	IL15 (ENSMICG00000003154) #19	INPP4B (ENSMICG00000006762) #20	USP38 (ENSMICG00000035652) #21	GAB1 (ENSMICG00000009956) #22	SMARCA5 (ENSMICG00000003971) #23	FREM3 (ENSMICG00000046112) #24	ENSMICG00000033671	HHIP (ENSMICG00000003993) #26	ANAPC10 (ENSMICG00000048106) #27	ABCE1 (ENSMICG00000015343) #28	OTUD4 (ENSMICG00000031430)	SMAD1 (ENSMICG00000000562) #30	MMAA (ENSMICG00000000564) #31	C4orf51 (ENSMICG00000045099) #32	ZNF827 (ENSMICG00000000567) #33	LSM6 (ENSMICG00000042599) #34	REELD1 (ENSMICG00000043534)	SLC10A7 (ENSMICG00000000572) #35	POU4F2 (ENSMICG00000034755) #37
Lemuriformes_a	ANCESTRAL SPECIES	61	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.n #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Greater bamboo lemur	MODERN SPECIES	559													IL15 (ENSPSMG00000016752) #19	INPP4B (ENSPSMG00000016845) #20	USP38 (ENSPSMG00000016880) #21	GAB1 (ENSPSMG00000016944) #22	SMARCA5 (ENSPSMG00000017072) #23	FREM3 (ENSPSMG00000017259) #24	ENSPSMG00000017284 #25	HHIP (ENSPSMG00000017317) #26	ANAPC10 (ENSPSMG00000017344) #27	ABCE1 (ENSPSMG00000017393) #28	OTUD4 (ENSPSMG00000017444)	SMAD1 (ENSPSMG00000017518) #30	MMAA (ENSPSMG00000017593) #31	C4orf51 (ENSPSMG00000017600) #32	ZNF827 (ENSPSMG00000017648) #33
Coquerels sifaka	MODERN SPECIES	267			ADGRE2 (ENSPCOG00000027244)	ZNF333 (ENSPCOG00000016442)	ADGRE3 (ENSPCOG00000014538)	ENSPCOG00000014152	ENSPCOG00000024825	NDUFB7 (ENSPCOG00000024695) #8	TECR (ENSPCOG00000023638) #7	RNF150 (ENSPCOG00000016876) #17	ZNF330 (ENSPCOG00000019805) #18	IL15 (ENSPCOG00000020910) #19	INPP4B (ENSPCOG00000015413) #20	ENSPCOG00000013141 #20	USP38 (ENSPCOG00000027643) #21	GAB1 (ENSPCOG00000018531) #22	SMARCA5 (ENSPCOG00000026744) #23	FREM3 (ENSPCOG00000028758) #24	ENSPCOG00000020754	HHIP (ENSPCOG00000019323) #26	ANAPC10 (ENSPCOG00000019031) #27	ABCE1 (ENSPCOG00000028022) #28	OTUD4 (ENSPCOG00000024062)
Bushbaby	MODERN SPECIES	156	SETD7 (ENSOGAG00000012216)	MGST2 (ENSOGAG00000006051)	MAML3 (ENSOGAG00000033459)	SCOC (ENSOGAG00000026414) #10	CLGN (ENSOGAG00000012402) #11	ELMOD2 (ENSOGAG00000006803) #13	UCP1 (ENSOGAG00000006807) #14	TBC1D9 (ENSOGAG00000006809) #15	ENSOGAG00000027660	RNF150 (ENSOGAG00000006816) #17	ZNF330 (ENSOGAG00000011993) #18	IL15 (ENSOGAG00000011090) #19	ENSOGAG00000011094 #20	ENSOGAG00000031567 #20	USP38 (ENSOGAG00000003985) #21	GAB1 (ENSOGAG00000003737) #22	SMARCA5 (ENSOGAG00000009702) #23	FREM3 (ENSOGAG00000030589) #24	HHIP (ENSOGAG00000006900) #26	ANAPC10 (ENSOGAG00000006902) #27	ABCE1 (ENSOGAG00000006906) #28	OTUD4 (ENSOGAG00000006907)	SMAD1 (ENSOGAG00000000150) #30	MMAA (ENSOGAG00000012507) #31	ZNF827 (ENSOGAG00000005635) #33	ENSOGAG00000026665 #34	SLC10A7 (ENSOGAG00000008690) #35	POU4F2 (ENSOGAG00000028626) #37	TTC29 (ENSOGAG00000010351)	EDNRA (ENSOGAG00000015817)	TMEM184C (ENSOGAG00000015819)
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156801 #22
Hedgehog	MODERN SPECIES	1211																GAB1 (ENSEEUG00000006825) #22
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Mustelinae	ANCESTRAL SPECIES	82	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B	ENSGT00510000049722	ENSGT00940000158614	ENSGT00940000158299	ENSGT00940000157269.a.a	ENSGT00940000160868	ENSGT01030000234597.a.b.a	ENSGT00390000000378.d.b.db.b	ENSGT00940000159105	ENSGT01030000234527.A.a.b.a.a	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.q.b	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00960000188301	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Ferret	MODERN SPECIES	369	CLU (ENSMPUG00000000903)	ENSMPUG00000000883	EPHX2 (ENSMPUG00000000882)	CHRNA2 (ENSMPUG00000000876)	PTK2B (ENSMPUG00000000875)	TRIM35 (ENSMPUG00000000873)	ENSMPUG00000000872	STMN4 (ENSMPUG00000000871)	ENSMPUG00000000868	ADRA1A (ENSMPUG00000000865)	DPYSL2 (ENSMPUG00000000862)	ENSMPUG00000018484	PNMA2 (ENSMPUG00000018482)	ENSMPUG00000000829	USP38 (ENSMPUG00000000827) #21	GAB1 (ENSMPUG00000000823) #22
American mink	MODERN SPECIES	197										ENSNVIG00000007896	ADRA1A (ENSNVIG00000007921)	DPYSL2 (ENSNVIG00000007952)	PNMA2 (ENSNVIG00000008000)	ENSNVIG00000008003	UBP38 (ENSNVIG00000008015) #21	GAB1 (ENSNVIG00000008071) #22	SMARCA5 (ENSNVIG00000008216) #23	FREM3 (ENSNVIG00000008272) #24	ENSNVIG00000008308	HHIP (ENSNVIG00000008323) #26	D6RA92 (ENSNVIG00000008368) #27	ABCE1 (ENSNVIG00000008435) #28	OTUD4 (ENSNVIG00000008469)	SMAD1 (ENSNVIG00000008529) #30	MMAA (ENSNVIG00000008585) #31	C4orf51 (ENSNVIG00000008623) #32	ZNF827 (ENSNVIG00000008646) #33	ENSNVIG00000008816 #34	REELD1 (ENSNVIG00000008846)	NTCP7 (ENSNVIG00000008869) #35	POU4F2 (ENSNVIG00000008980) #37
Ursidae	ANCESTRAL SPECIES	17	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Ursus	ANCESTRAL SPECIES	68	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00390000008611	ENSGT01100000263512.a.a.b
American black bear	MODERN SPECIES	1800															USP38 (ENSUAMG00000023510) #21	GAB1 (ENSUAMG00000023502) #22	SMARCA5 (ENSUAMG00000023495) #23
Polar bear	MODERN SPECIES	122	RAB33B (ENSUMAG00000014975)	SETD7 (ENSUMAG00000014983)	MGST2 (ENSUMAG00000014995)	ENSUMAG00000015003 #10	CLGN (ENSUMAG00000015013) #11	MGAT4D (ENSUMAG00000015104) #12	ELMOD2 (ENSUMAG00000015111) #13	UCP1 (ENSUMAG00000015121) #14	TBC1D9 (ENSUMAG00000015143) #15	RNF150 (ENSUMAG00000015188) #17	ZNF330 (ENSUMAG00000015225) #18	IL15 (ENSUMAG00000015241) #19	INPP4B (ENSUMAG00000015269) #20	ENSUMAG00000015290 #21	ENSUMAG00000015293 #21	GAB1 (ENSUMAG00000015305) #22	SMARCA5 (ENSUMAG00000015324) #23	FREM3 (ENSUMAG00000015339) #24	ENSUMAG00000015349 #25	HHIP (ENSUMAG00000015358) #26	ANAPC10 (ENSUMAG00000015370) #27	ABCE1 (ENSUMAG00000015377) #28	OTUD4 (ENSUMAG00000015403)	SMAD1 (ENSUMAG00000015575) #30	MMAA (ENSUMAG00000015592) #31	ZNF827 (ENSUMAG00000015618) #33	LSM6 (ENSUMAG00000015727) #34	REELD1 (ENSUMAG00000015729)	SLC10A7 (ENSUMAG00000015740) #35	TTC29 (ENSUMAG00000015756)	EDNRA (ENSUMAG00000015775)
Giant Panda	MODERN SPECIES	15	RAB33B (ENSAMEG00000025425)	SETD7 (ENSAMEG00000010974)	MGST2 (ENSAMEG00000010971)	MAML3 (ENSAMEG00000010963)	ENSAMEG00000010957 #10	CLGN (ENSAMEG00000010915) #11	MGAT4D (ENSAMEG00000029626) #12	ELMOD2 (ENSAMEG00000002850) #13	UCP1 (ENSAMEG00000002869) #14	TBC1D9 (ENSAMEG00000002883) #15	RNF150 (ENSAMEG00000002953) #17	ZNF330 (ENSAMEG00000002960) #18	IL15 (ENSAMEG00000008060) #19	INPP4B (ENSAMEG00000008050) #20	USP38 (ENSAMEG00000009698) #21	GAB1 (ENSAMEG00000009676) #22	SMARCA5 (ENSAMEG00000009585) #23	FREM3 (ENSAMEG00000016565) #24	ENSAMEG00000024386	HHIP (ENSAMEG00000016574) #26	ANAPC10 (ENSAMEG00000016589) #27	ABCE1 (ENSAMEG00000016596) #28	OTUD4 (ENSAMEG00000016621)	ENSAMEG00000019876	SMAD1 (ENSAMEG00000016645) #30	MMAA (ENSAMEG00000016655) #31	C4orf51 (ENSAMEG00000024155) #32	ZNF827 (ENSAMEG00000016667) #33	LSM6 (ENSAMEG00000016671) #34	REELD1 (ENSAMEG00000028424)	SLC10A7 (ENSAMEG00000016674) #35
Canidae	ANCESTRAL SPECIES	61	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828.l #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000012647.b	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000185087	ENSGT00940000158403 #21	ENSGT00940000156801 #22
Canis_lupus	ANCESTRAL SPECIES	48	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828.l #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000012647.b	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22
Dingo	MODERN SPECIES	120	ENSCAFG00020020876	ENSCAFG00020020879	ENSCAFG00020020881 #10	CLGN (ENSCAFG00020020884) #11	MGAT4D (ENSCAFG00020020893) #12	ELMOD2 (ENSCAFG00020020899) #13	UCP1 (ENSCAFG00020020904) #14	TBC1D9 (ENSCAFG00020020922) #15	RNF150 (ENSCAFG00020020931) #17	ZNF330 (ENSCAFG00020020936) #18	ENSCAFG00020020939	IL15 (ENSCAFG00020020943) #19	INPP4B (ENSCAFG00020020999) #20	ENSCAFG00020021166	USP38 (ENSCAFG00020021169) #21	GAB1 (ENSCAFG00020021176) #22
Dog	MODERN SPECIES	10	MGST2 (ENSCAFG00845021915)	MAML3 (ENSCAFG00845021815)	SCOC (ENSCAFG00845021519) #10	CLGN (ENSCAFG00845021226) #11	MGAT4D (ENSCAFG00845020851) #12	ELMOD2 (ENSCAFG00845020750) #13	UCP1 (ENSCAFG00845020627) #14	TBC1D9 (ENSCAFG00845020204) #15	RNF150 (ENSCAFG00845019931) #17	ZNF330 (ENSCAFG00845019797) #18	ENSCAFG00845019765	IL15 (ENSCAFG00845019627) #19	INPP4B (ENSCAFG00845019237) #20	ENSCAFG00845019092	USP38 (ENSCAFG00845018979) #21	GAB1 (ENSCAFG00845018786) #22
Red fox	MODERN SPECIES	270														ENSVVUG00000008095	USP38 (ENSVVUG00000008134) #21	GAB1 (ENSVVUG00000008140) #22
Felidae	ANCESTRAL SPECIES	4	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00960000188301	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Panthera	ANCESTRAL SPECIES	5	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00960000188301	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Tiger	MODERN SPECIES	367	RAB33B (ENSPTIG00000007518)	SETD7 (ENSPTIG00000007276)	MGST2 (ENSPTIG00000007125)	ENSPTIG00000010071	SCOC (ENSPTIG00000006565) #10	CLGN (ENSPTIG00000006432) #11	MGAT4D (ENSPTIG00000005940) #12	ELMOD2 (ENSPTIG00000005825) #13	UCP1 (ENSPTIG00000005728) #14	TBC1D9 (ENSPTIG00000005564) #15	RNF150 (ENSPTIG00000005145) #17	ZNF330 (ENSPTIG00000004314) #18	IL15 (ENSPTIG00000001825) #19	INPP4B (ENSPTIG00000000345) #20	USP38 (ENSPTIG00000021206) #21	GAB1 (ENSPTIG00000021050) #22	SMARCA5 (ENSPTIG00000020959) #23	FREM3 (ENSPTIG00000020850) #24	ENSPTIG00000020826	HHIP (ENSPTIG00000020696) #26	ENSPTIG00000020677 #27	ENSPTIG00000020565 #27	ABCE1 (ENSPTIG00000020422) #28	OTUD4 (ENSPTIG00000020267)	SMAD1 (ENSPTIG00000020242) #30	MMAA (ENSPTIG00000020116) #31	C4orf51 (ENSPTIG00000019914) #32	ZNF827 (ENSPTIG00000019818) #33	LSM6 (ENSPTIG00000019769) #34	REELD1 (ENSPTIG00000019736)	SLC10A7 (ENSPTIG00000018877) #35
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00960000188301	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
leopard	MODERN SPECIES	3	RAB33B (ENSPPRG00000006119)	SETD7 (ENSPPRG00000005792)	MGST2 (ENSPPRG00000004911)	MAML3 (ENSPPRG00000003719)	ENSPPRG00000002856 #10	CLGN (ENSPPRG00000001604) #11	MGAT4D (ENSPPRG00000001104) #12	ELMOD2 (ENSPPRG00000000147) #13	UCP1 (ENSPPRG00000022839) #14	TBC1D9 (ENSPPRG00000022937) #15	RNF150 (ENSPPRG00000023447) #17	ZNF330 (ENSPPRG00000015737) #18	IL15 (ENSPPRG00000012086) #19	INPP4B (ENSPPRG00000009054) #20	USP38 (ENSPPRG00000006892) #21	GAB1 (ENSPPRG00000005605) #22	SMARCA5 (ENSPPRG00000004925) #23	FREM3 (ENSPPRG00000002995) #24	ENSPPRG00000017780	ENSPPRG00000002255	HHIP (ENSPPRG00000001593) #26	ANAPC10 (ENSPPRG00000000631) #27	ABCE1 (ENSPPRG00000022963) #28	OTUD4 (ENSPPRG00000023451)	SMAD1 (ENSPPRG00000024576) #30	MMAA (ENSPPRG00000018308) #31	C4orf51 (ENSPPRG00000014494) #32	ZNF827 (ENSPPRG00000013768) #33	LSM6 (ENSPPRG00000012806) #34	REELD1 (ENSPPRG00000012290)	SLC10A7 (ENSPPRG00000011455) #35
lion	MODERN SPECIES	4	ENSPLOG00000007887	SETD7 (ENSPLOG00000007858)	MGST2 (ENSPLOG00000007800)	MAML3 (ENSPLOG00000007702)	ENSPLOG00000007535 #10	CLGN (ENSPLOG00000014259) #11	MGAT4D (ENSPLOG00000014004) #12	ELMOD2 (ENSPLOG00000013886) #13	UCP1 (ENSPLOG00000013796) #14	TBC1D9 (ENSPLOG00000013580) #15	RNF150 (ENSPLOG00000013378) #17	ZNF330 (ENSPLOG00000013327) #18	IL15 (ENSPLOG00000013278) #19	INPP4B (ENSPLOG00000013206) #20	USP38 (ENSPLOG00000013115) #21	GAB1 (ENSPLOG00000012927) #22	SMARCA5 (ENSPLOG00000012828) #23	FREM3 (ENSPLOG00000012733) #24	ENSPLOG00000012702	HHIP (ENSPLOG00000012505) #26	ANAPC10 (ENSPLOG00000012426) #27	ABCE1 (ENSPLOG00000012370) #28	OTUD4 (ENSPLOG00000012289)	SMAD1 (ENSPLOG00000012243) #30	MMAA (ENSPLOG00000012175) #31	C4orf51 (ENSPLOG00000012109) #32	ZNF827 (ENSPLOG00000011513) #33	LSM6 (ENSPLOG00000011387) #34	REELD1 (ENSPLOG00000011324)	SLC10A7 (ENSPLOG00000011188) #35	POU4F2 (ENSPLOG00000011107) #37
Cat	MODERN SPECIES	235	SETD7 (ENSFCAG00000015075)	MGST2 (ENSFCAG00000028794)	MAML3 (ENSFCAG00000036439)	ENSFCAG00000045955 #10	CLGN (ENSFCAG00000018363) #11	MGAT4D (ENSFCAG00000025557) #12	ELMOD2 (ENSFCAG00000030559) #13	UCP1 (ENSFCAG00000008906) #14	TBC1D9 (ENSFCAG00000000874) #15	RNF150 (ENSFCAG00000033343) #17	ZNF330 (ENSFCAG00000025166) #18	IL15 (ENSFCAG00000030158) #19	INPP4B (ENSFCAG00000026268) #20	ENSFCAG00000049302	USP38 (ENSFCAG00000024468) #21	GAB1 (ENSFCAG00000027102) #22	SMARCA5 (ENSFCAG00000004544) #23	FREM3 (ENSFCAG00000022741) #24	ENSFCAG00000048627	ENSFCAG00000041204	HHIP (ENSFCAG00000018108) #26	ANAPC10 (ENSFCAG00000030108) #27	ABCE1 (ENSFCAG00000030441) #28	OTUD4 (ENSFCAG00000022224)	SMAD1 (ENSFCAG00000004136) #30	MMAA (ENSFCAG00000030592) #31	C4orf51 (ENSFCAG00000045664) #32	ZNF827 (ENSFCAG00000004139) #33	LSM6 (ENSFCAG00000003047) #34	REELD1 (ENSFCAG00000046759)	ENSFCAG00000028577
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Equus	ANCESTRAL SPECIES	24	ENSGT00390000004827	ENSGT00940000160288.d	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000170855	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35
Donkey	MODERN SPECIES	22	SETD7 (ENSEASG00005007862)	ENSEASG00005007860	MAML3 (ENSEASG00005007858)	ENSEASG00005033815 #10	CLGN (ENSEASG00005007852) #11	MGAT4D (ENSEASG00005007849) #12	ELMOD2 (ENSEASG00005007845) #13	UCP1 (ENSEASG00005007842) #14	TBC1D9 (ENSEASG00005007836) #15	RNF150 (ENSEASG00005007830) #17	ZNF330 (ENSEASG00005007822) #18	IL15 (ENSEASG00005036963) #19	ENSEASG00005007814	INPP4B (ENSEASG00005007803) #20	USP38 (ENSEASG00005005319) #21	GAB1 (ENSEASG00005005314) #22	SMARCA5 (ENSEASG00005001866) #23	ENSEASG00005027902 #25	HHIP (ENSEASG00005001609) #26	ANAPC10 (ENSEASG00005036814) #27	ABCE1 (ENSEASG00005001594) #28	OTUD4 (ENSEASG00005001588)	ENSEASG00005001582	SMAD1 (ENSEASG00005001575) #30	MMAA (ENSEASG00005001563) #31	C4orf51 (ENSEASG00005027855) #32	ZNF827 (ENSEASG00005001543) #33	LSM6 (ENSEASG00005001533) #34	REELD1 (ENSEASG00005001529)	SLC10A7 (ENSEASG00005001510) #35	POU4F2 (ENSEASG00005001506) #37
Horse	MODERN SPECIES	11	ENSECAG00000030092 #10	ENSECAG00000047277 #11	CLGN (ENSECAG00000017686) #11	MGAT4D (ENSECAG00000017651) #12	ELMOD2 (ENSECAG00000017466) #13	UCP1 (ENSECAG00000026962) #14	TBC1D9 (ENSECAG00000015440) #15	ENSECAG00000049272	RNF150 (ENSECAG00000015385) #17	ZNF330 (ENSECAG00000014441) #18	IL15 (ENSECAG00000014406) #19	INPP4B (ENSECAG00000010327) #20	ENSECAG00000054413	USP38 (ENSECAG00000009333) #21	ENSECAG00000059675	GAB1 (ENSECAG00000008570) #22	SMARCA5 (ENSECAG00000002676) #23	FREM3 (ENSECAG00000024518) #24	ENSECAG00000024514 #25	HHIP (ENSECAG00000024485) #26	ENSECAG00000044723	ANAPC10 (ENSECAG00000024416) #27	ABCE1 (ENSECAG00000023648) #28	OTUD4 (ENSECAG00000023403)	ENSECAG00000053592	ENSECAG00000050002	SMAD1 (ENSECAG00000022649) #30	MMAA (ENSECAG00000021810) #31	ENSECAG00000058529 #31	C4orf51 (ENSECAG00000034055) #32	ZNF827 (ENSECAG00000021655) #33
Chiroptera	ANCESTRAL SPECIES	36	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Megabat	MODERN SPECIES	3966																GAB1 (ENSPVAG00000006481) #22	SMARCA5 (ENSPVAG00000006482) #23
Microchiroptera	ANCESTRAL SPECIES	38	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Greater horseshoe bat	MODERN SPECIES	9	SETD7 (ENSRFEG00010012204)	MGST2 (ENSRFEG00010012252)	MAML3 (ENSRFEG00010012335)	SCOC (ENSRFEG00010012423) #10	ENSRFEG00010012509	MGAT4D (ENSRFEG00010012579) #12	ELMOD2 (ENSRFEG00010012962) #13	UCP1 (ENSRFEG00010013035) #14	TBC1D9 (ENSRFEG00010013080) #15	RNF150 (ENSRFEG00010013446) #17	ZNF330 (ENSRFEG00010013528) #18	IL15 (ENSRFEG00010013629) #19	INPP4B (ENSRFEG00010013805) #20	USP38 (ENSRFEG00010013936) #21	ENSRFEG00010014017	GAB1 (ENSRFEG00010014081) #22	SMARCA5 (ENSRFEG00010014236) #23	ENSRFEG00010014311	HHIP (ENSRFEG00010014382) #26	ENSRFEG00010014457 #27	ABCE1 (ENSRFEG00010014545) #28	OTUD4 (ENSRFEG00010014600)	SMAD1 (ENSRFEG00010014733) #30	MMAA (ENSRFEG00010014780) #31	C4orf51 (ENSRFEG00010014824) #32	ZNF827 (ENSRFEG00010014952) #33	LSM6 (ENSRFEG00010015332) #34	SLC10A7 (ENSRFEG00010015418) #35	POU4F2 (ENSRFEG00010015642) #37	TTC29 (ENSRFEG00010015692)	EDNRA (ENSRFEG00010016295)
Microbat	MODERN SPECIES	938	MAML3 (ENSMLUG00000008845)	SCOC (ENSMLUG00000014087) #10	CLGN (ENSMLUG00000014092) #11	MGAT4D (ENSMLUG00000009542) #12	ELMOD2 (ENSMLUG00000009559) #13	UCP1 (ENSMLUG00000009574) #14	TBC1D9 (ENSMLUG00000009598) #15	ENSMLUG00000029642	RNF150 (ENSMLUG00000009658) #17	ZNF330 (ENSMLUG00000009684) #18	IL15 (ENSMLUG00000007618) #19	ENSMLUG00000017627 #20	ENSMLUG00000027792 #20	USP38 (ENSMLUG00000013423) #21	ENSMLUG00000029899	GAB1 (ENSMLUG00000000457) #22	SMARCA5 (ENSMLUG00000000468) #23	HHIP (ENSMLUG00000009326) #26	ANAPC10 (ENSMLUG00000008607) #27	ABCE1 (ENSMLUG00000008618) #28	OTUD4 (ENSMLUG00000008637)	SMAD1 (ENSMLUG00000012261) #30	MMAA (ENSMLUG00000008078) #31	ZNF827 (ENSMLUG00000008100) #33	LSM6 (ENSMLUG00000026355) #34	ENSMLUG00000022646 #35	ENSMLUG00000015165 #35	POU4F2 (ENSMLUG00000015174) #37	TTC29 (ENSMLUG00000015176)	EDNRA (ENSMLUG00000002880)	TMEM184C (ENSMLUG00000014055)
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Suina	ANCESTRAL SPECIES	22	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Pig	MODERN SPECIES	16	RAB33B (ENSSSCG00000020711)	SETD7 (ENSSSCG00000030396)	MGST2 (ENSSSCG00000031736)	ENSSSCG00000046543	MAML3 (ENSSSCG00000009060)	SCOC (ENSSSCG00000038550) #10	CLGN (ENSSSCG00000026360) #11	MGAT4D (ENSSSCG00000038236) #12	ELMOD2 (ENSSSCG00000009055) #13	TBC1D9 (ENSSSCG00000032741) #15	RNF150 (ENSSSCG00000009053) #17	ZNF330 (ENSSSCG00000009052) #18	IL15 (ENSSSCG00000009051) #19	INPP4B (ENSSSCG00000009050) #20	USP38 (ENSSSCG00000009049) #21	GAB1 (ENSSSCG00000009048) #22	SMARCA5 (ENSSSCG00000009047) #23	ENSSSCG00000009046 #25	HHIP (ENSSSCG00000009045) #26	ANAPC10 (ENSSSCG00000033871) #27	ABCE1 (ENSSSCG00000009043) #28	OTUD4 (ENSSSCG00000009042)	SMAD1 (ENSSSCG00000009040) #30	MMAA (ENSSSCG00000009039) #31	C4orf51 (ENSSSCG00000042317) #32	ZNF827 (ENSSSCG00000009037) #33	LSM6 (ENSSSCG00000035973) #34	REELD1 (ENSSSCG00000041625)	ENSSSCG00000048545	SLC10A7 (ENSSSCG00000009035) #35	POU4F2 (ENSSSCG00000026015) #37
Chacoan peccary	MODERN SPECIES	120	NAA15 (ENSCWAG00000021191)	RAB33B (ENSCWAG00000021204)	SETD7 (ENSCWAG00000021207)	MGST2 (ENSCWAG00000021227)	MAML3 (ENSCWAG00000021238)	SCOC (ENSCWAG00000021260) #10	CLGN (ENSCWAG00000021275) #11	MGAT4D (ENSCWAG00000007811) #12	ELMOD2 (ENSCWAG00000008046) #13	TBC1D9 (ENSCWAG00000008142) #15	RNF150 (ENSCWAG00000008342) #17	ZNF330 (ENSCWAG00000008534) #18	IL15 (ENSCWAG00000008557) #19	INPP4B (ENSCWAG00000008695) #20	USP38 (ENSCWAG00000009147) #21	GAB1 (ENSCWAG00000009243) #22	SMARCA5 (ENSCWAG00000009513) #23	ENSCWAG00000009655	HHIP (ENSCWAG00000009710) #26	ANAPC10 (ENSCWAG00000009870) #27	ABCE1 (ENSCWAG00000009941) #28	OTUD4 (ENSCWAG00000010007)	SMAD1 (ENSCWAG00000010148) #30	MMAA (ENSCWAG00000010198) #31	C4orf51 (ENSCWAG00000010248) #32	ZNF827 (ENSCWAG00000010322) #33	LSM6 (ENSCWAG00000010564) #34	REELD1 (ENSCWAG00000010608)	SLC10A7 (ENSCWAG00000010694) #35	POU4F2 (ENSCWAG00000011402) #37	TTC29 (ENSCWAG00000011446)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Cetacea	ANCESTRAL SPECIES	12	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00990000212162	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00990000212162	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Odontoceti_a	ANCESTRAL SPECIES	26	ENSGT00940000156660	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00990000212162	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Dolphin	MODERN SPECIES	1811															USP38 (ENSTTRG00000002912) #21	GAB1 (ENSTTRG00000002914) #22	SMARCA5 (ENSTTRG00000002915) #23
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000156660	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00990000212162	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000156660	ENSGT00390000016928	ENSGT00950000182864.a.b.b.a.b.a.a.b	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00990000212162	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Narwhal	MODERN SPECIES	307	WFS1 (ENSMMNG00015012919)	PPP2R2C (ENSMMNG00015012939)	SETD7 (ENSMMNG00015012957)	MGST2 (ENSMMNG00015013012)	MAML3 (ENSMMNG00015013033)	SCOC (ENSMMNG00015013055) #10	CLGN (ENSMMNG00015013069) #11	ELMOD2 (ENSMMNG00015013079) #13	TBC1D9 (ENSMMNG00015013089) #15	ENSMMNG00015013116	RNF150 (ENSMMNG00015015631) #17	ZNF330 (ENSMMNG00015015654) #18	IL15 (ENSMMNG00015015698) #19	INPP4B (ENSMMNG00015015936) #20	USP38 (ENSMMNG00015016230) #21	GAB1 (ENSMMNG00015016325) #22	SMARCA5 (ENSMMNG00015016399) #23	ENSMMNG00015016476	HHIP (ENSMMNG00015016532) #26	ENSMMNG00015016565 #27	ABCE1 (ENSMMNG00015016581) #28	OTUD4 (ENSMMNG00015016633)	SMAD1 (ENSMMNG00015016702) #30	MMAA (ENSMMNG00015016739) #31	C4orf51 (ENSMMNG00015016781) #32	ZNF827 (ENSMMNG00015016835) #33	REELD1 (ENSMMNG00015016914)	SLC10A7 (ENSMMNG00015016983) #35	POU4F2 (ENSMMNG00015017044) #37	TTC29 (ENSMMNG00015017062)	EDNRA (ENSMMNG00015017085)
Beluga whale	MODERN SPECIES	53										ENSDLEG00000007660 #17	ENSDLEG00000007657	ZNF330 (ENSDLEG00000007642) #18	IL15 (ENSDLEG00000007616) #19	INPP4B (ENSDLEG00000016217) #20	USP38 (ENSDLEG00000016185) #21	GAB1 (ENSDLEG00000016168) #22	SMARCA5 (ENSDLEG00000016112) #23	HHIP (ENSDLEG00000016095) #26	ANAPC10 (ENSDLEG00000016085) #27	ABCE1 (ENSDLEG00000016059) #28	OTUD4 (ENSDLEG00000016002)	SMAD1 (ENSDLEG00000015975) #30	MMAA (ENSDLEG00000015945) #31	ZNF827 (ENSDLEG00000015910) #33	LSM6 (ENSDLEG00000015899) #34	REELD1 (ENSDLEG00000015878)	SLC10A7 (ENSDLEG00000015846) #35	POU4F2 (ENSDLEG00000015837) #37	TTC29 (ENSDLEG00000015814)	EDNRA (ENSDLEG00000015808)	ENSDLEG00000015796
Vaquita	MODERN SPECIES	16	WFS1 (ENSPSNG00000016467)	PPP2R2C (ENSPSNG00000016392)	SETD7 (ENSPSNG00000016301)	ENSPSNG00000016177	ENSPSNG00000016125	MAML3 (ENSPSNG00000016048)	SCOC (ENSPSNG00000015865) #10	CLGN (ENSPSNG00000015754) #11	ELMOD2 (ENSPSNG00000015677) #13	TBC1D9 (ENSPSNG00000015613) #15	RNF150 (ENSPSNG00000015526) #17	ZNF330 (ENSPSNG00000015475) #18	IL15 (ENSPSNG00000015292) #19	INPP4B (ENSPSNG00000015200) #20	USP38 (ENSPSNG00000015085) #21	GAB1 (ENSPSNG00000014895) #22	SMARCA5 (ENSPSNG00000014782) #23	ENSPSNG00000014681	HHIP (ENSPSNG00000014618) #26	ENSPSNG00000014531 #27	ABCE1 (ENSPSNG00000014453) #28	OTUD4 (ENSPSNG00000014326)	SMAD1 (ENSPSNG00000014264) #30	MMAA (ENSPSNG00000014172) #31	ZNF827 (ENSPSNG00000013982) #33	LSM6 (ENSPSNG00000013905) #34	SLC10A7 (ENSPSNG00000013581) #35	POU4F2 (ENSPSNG00000013436) #37	TTC29 (ENSPSNG00000013058)	EDNRA (ENSPSNG00000012879)	TMEM184C (ENSPSNG00000012807)
Sperm whale	MODERN SPECIES	18	SETD7 (ENSPCTG00005000966)	ENSPCTG00005000987	ENSPCTG00005000996	MAML3 (ENSPCTG00005001012)	ENSPCTG00005001027	ENSPCTG00005001047 #10	CLGN (ENSPCTG00005001074) #11	ELMOD2 (ENSPCTG00005001098) #13	ENSPCTG00005001118 #14	TBC1D9 (ENSPCTG00005001153) #15	RNF150 (ENSPCTG00005001237) #17	ZNF330 (ENSPCTG00005001281) #18	IL15 (ENSPCTG00005001318) #19	INPP4B (ENSPCTG00005001389) #20	USP38 (ENSPCTG00005001450) #21	GAB1 (ENSPCTG00005001490) #22	SMARCA5 (ENSPCTG00005001535) #23	ENSPCTG00005001593	HHIP (ENSPCTG00005001627) #26	ANAPC10 (ENSPCTG00005001660) #27	ABCE1 (ENSPCTG00005001679) #28	OTUD4 (ENSPCTG00005001708)	SMAD1 (ENSPCTG00005001735) #30	MMAA (ENSPCTG00005001755) #31	ZNF827 (ENSPCTG00005001804) #33	LSM6 (ENSPCTG00005001901) #34	SLC10A7 (ENSPCTG00005001951) #35	POU4F2 (ENSPCTG00005002032) #37	TTC29 (ENSPCTG00005002054)	ENSPCTG00005002142	EDNRA (ENSPCTG00005002154)
Blue whale	MODERN SPECIES	16	MGST2 (ENSBMSG00010001835)	MAML3 (ENSBMSG00010001847)	ENSBMSG00010001855	SCOC (ENSBMSG00010001913) #10	CLGN (ENSBMSG00010001947) #11	MGAT4D (ENSBMSG00010001980) #12	ELMOD2 (ENSBMSG00010002040) #13	TBC1D9 (ENSBMSG00010002068) #15	RNF150 (ENSBMSG00010002115) #17	ZNF330 (ENSBMSG00010002166) #18	ENSBMSG00010002175	IL15 (ENSBMSG00010002198) #19	INPP4B (ENSBMSG00010002249) #20	ENSBMSG00010002305	USP38 (ENSBMSG00010002350) #21	GAB1 (ENSBMSG00010002430) #22	SMARCA5 (ENSBMSG00010002485) #23	ENSBMSG00010002557	HHIP (ENSBMSG00010002579) #26	ENSBMSG00010002597 #27	ABCE1 (ENSBMSG00010002608) #28	OTUD4 (ENSBMSG00010002625)	SMAD1 (ENSBMSG00010002652) #30	MMAA (ENSBMSG00010002665) #31	C4orf51 (ENSBMSG00010002687) #32	ZNF827 (ENSBMSG00010002746) #33	LSM6 (ENSBMSG00010003073) #34	REELD1 (ENSBMSG00010003085)	SLC10A7 (ENSBMSG00010003119) #35	POU4F2 (ENSBMSG00010003153) #37	TTC29 (ENSBMSG00010003177)
Pecora	ANCESTRAL SPECIES	14	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Percora_a	ANCESTRAL SPECIES	17	ENSGT00960000186868	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00950000186340	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Bovidae	ANCESTRAL SPECIES	17	ENSGT00960000186868	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00950000186340	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Caprinae	ANCESTRAL SPECIES	17	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00950000186340	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722.bb.a #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.y.b #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Rambouillet Sheep	MODERN SPECIES	8	SCOC (ENSOARG00020013497) #10	CLGN (ENSOARG00020013338) #11	MGAT4D (ENSOARG00020012924) #12	ENSOARG00020012870	ELMOD2 (ENSOARG00020012799) #13	UCP1 (ENSOARG00020012680) #14	TBC1D9 (ENSOARG00020012430) #15	RNF150 (ENSOARG00020012195) #17	ZNF330 (ENSOARG00020012126) #18	ENSOARG00020012074	IL15 (ENSOARG00020011892) #19	INPP4B (ENSOARG00020011132) #20	ENSOARG00020011060	USP38 (ENSOARG00020010864) #21	ENSOARG00020010806	GAB1 (ENSOARG00020010619) #22	SMARCA5 (ENSOARG00020010256) #23	FREM3 (ENSOARG00020010076) #24	HHIP (ENSOARG00020025042) #26	ANAPC10 (ENSOARG00020025021) #27	ABCE1 (ENSOARG00020024985) #28	OTUD4 (ENSOARG00020024925)	SMAD1 (ENSOARG00020024894) #30	MMAA (ENSOARG00020024857) #31	C4orf51 (ENSOARG00020024840) #32	ZNF827 (ENSOARG00020024616) #33	POU4F2 (ENSOARG00020024207) #37	TTC29 (ENSOARG00020024092)	EDNRA (ENSOARG00020024024)	TMEM184C (ENSOARG00020023997)	PRMT9 (ENSOARG00020023961)
Goat	MODERN SPECIES	8	MGST2 (ENSCHIG00000013345)	ENSCHIG00000010711	ENSCHIG00000024566	SCOC (ENSCHIG00000024222) #10	CLGN (ENSCHIG00000015205) #11	MGAT4D (ENSCHIG00000015716) #12	ELMOD2 (ENSCHIG00000010724) #13	UCP1 (ENSCHIG00000011037) #14	TBC1D9 (ENSCHIG00000012014) #15	RNF150 (ENSCHIG00000025485) #17	ZNF330 (ENSCHIG00000009128) #18	ENSCHIG00000017067	IL15 (ENSCHIG00000024482) #19	INPP4B (ENSCHIG00000019789) #20	USP38 (ENSCHIG00000023190) #21	GAB1 (ENSCHIG00000024669) #22	ENSCHIG00000013730 #23	FREM3 (ENSCHIG00000016285) #24	ENSCHIG00000021322	HHIP (ENSCHIG00000005365) #26	ENSCHIG00000023676 #27	ABCE1 (ENSCHIG00000019274) #28	OTUD4 (ENSCHIG00000016816)	SMAD1 (ENSCHIG00000011281) #30	ENSCHIG00000012417	ENSCHIG00000016648	MMAA (ENSCHIG00000022132) #31	C4orf51 (ENSCHIG00000010712) #32	ZNF827 (ENSCHIG00000023405) #33	ENSCHIG00000010334 #34	SLC10A7 (ENSCHIG00000008543) #35
Bovinae	ANCESTRAL SPECIES	13	ENSGT00950000183201.b.b.a	ENSGT00390000008828.h #10	ENSGT00390000008828.g.a #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043.k #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00950000186340	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00970000194377.a	ENSGT00550000075214 #25	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.w.a #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Bos	ANCESTRAL SPECIES	14	ENSGT00940000160288	ENSGT00960000186868	ENSGT00950000183201.b.b.a	ENSGT00390000008828.g.b #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043.k #18	ENSGT00390000016264 #19	ENSGT00940000157587.e #20	ENSGT00940000158403 #21	ENSGT00950000186340	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00970000194377.a	ENSGT00970000194377.b	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908.a #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.w.a #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Bos_a	ANCESTRAL SPECIES	14	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828.g.a #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043.l.b #18	ENSGT00390000017043.k #18	ENSGT00390000016264 #19	ENSGT00940000157587.e #20	ENSGT00940000158403 #21	ENSGT00950000186340	ENSGT00940000156801 #22	ENSGT00940000156733 #23
Wild yak	MODERN SPECIES	1493												ENSBMUG00000000555 #20	ENSBMUG00000000576	USP38 (ENSBMUG00000000599) #21	ENSBMUG00000000611	GAB1 (ENSBMUG00000000723) #22
Domestic yak	MODERN SPECIES	7	ENSBGRG00000022257 #10	CLGN (ENSBGRG00000022178) #11	MGAT4D (ENSBGRG00000022069) #12	ELMOD2 (ENSBGRG00000022015) #13	UCP1 (ENSBGRG00000021984) #14	TBC1D9 (ENSBGRG00000021876) #15	RNF150 (ENSBGRG00000021671) #17	ENSBGRG00000021644	ENSBGRG00000021593 #18	ENSBGRG00000021569	IL15 (ENSBGRG00000021437) #19	ENSBGRG00000021418	INPP4B (ENSBGRG00000020985) #20	USP38 (ENSBGRG00000020903) #21	ENSBGRG00000020881	GAB1 (ENSBGRG00000020583) #22	SMARCA5 (ENSBGRG00000020282) #23	ENSBGRG00000020247	ENSBGRG00000020228	TMEM192 (ENSBGRG00000020095)	KLHL2 (ENSBGRG00000019657)	MSMO1 (ENSBGRG00000019539)	CPE (ENSBGRG00000019419)	ENSBGRG00000019274	TLL1 (ENSBGRG00000019182)	ENSBGRG00000019119	NPY2R (ENSBGRG00000019075)	RBM46 (ENSBGRG00000018958)	ENSBGRG00000018917	ENSBGRG00000018894	ENSBGRG00000018841
Bos_b	ANCESTRAL SPECIES	13	ENSGT00940000160288	ENSGT00960000186868	ENSGT00950000183201.b.b.a	ENSGT00390000008828.g.b #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043.k #18	ENSGT00390000016264 #19	ENSGT00940000157587.e #20	ENSGT00940000158403 #21	ENSGT00950000186340	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00970000194377.a	ENSGT00970000194377.b	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908.a #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978.w.a #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Hybrid Bos Indicus	MODERN SPECIES	8	ENSBIXG00005009516 #10	CLGN (ENSBIXG00005009427) #11	MGAT4D (ENSBIXG00005009367) #12	ELMOD2 (ENSBIXG00005009346) #13	UCP1 (ENSBIXG00005009326) #14	TBC1D9 (ENSBIXG00005009304) #15	RNF150 (ENSBIXG00005009250) #17	ENSBIXG00005000423 #18	IL15 (ENSBIXG00005000406) #19	INPP4B (ENSBIXG00005006091) #20	ENSBIXG00005009069	ENSBIXG00005009053	USP38 (ENSBIXG00005000366) #21	ENSBIXG00005009006	ENSBIXG00005009003	GAB1 (ENSBIXG00005006767) #22	SMARCA5 (ENSBIXG00005008943) #23	ENSBIXG00005008884	ENSBIXG00005006405	ENSBIXG00005008836	HHIP (ENSBIXG00005008793) #26	ANAPC10 (ENSBIXG00005008731) #27	ABCE1 (ENSBIXG00005008701) #28	OTUD4 (ENSBIXG00005008682)	SMAD1 (ENSBIXG00005008639) #30	MMAA (ENSBIXG00005008618) #31	C4orf51 (ENSBIXG00005006083) #32	ZNF827 (ENSBIXG00005008564) #33	ENSBIXG00005008497 #34	REELD1 (ENSBIXG00005008481)	SLC10A7 (ENSBIXG00005008458) #35
Cow	MODERN SPECIES	8	ENSBTAG00000049381	MGST2 (ENSBTAG00000021779)	MAML3 (ENSBTAG00000011373)	SCOC (ENSBTAG00000022109) #10	CLGN (ENSBTAG00000001580) #11	MGAT4D (ENSBTAG00000034281) #12	ELMOD2 (ENSBTAG00000014007) #13	UCP1 (ENSBTAG00000004647) #14	TBC1D9 (ENSBTAG00000018951) #15	RNF150 (ENSBTAG00000049010) #17	ZNF330 (ENSBTAG00000000297) #18	IL15 (ENSBTAG00000018200) #19	INPP4B (ENSBTAG00000014111) #20	USP38 (ENSBTAG00000001356) #21	ENSBTAG00000052695	GAB1 (ENSBTAG00000002813) #22	SMARCA5 (ENSBTAG00000003399) #23	GYPB (ENSBTAG00000047331)	GYPA (ENSBTAG00000039325) #25	HHIP (ENSBTAG00000016071) #26	ANAPC10 (ENSBTAG00000013326) #27	ABCE1 (ENSBTAG00000019854) #28	OTUD4 (ENSBTAG00000019857)	SMAD1 (ENSBTAG00000002835) #30	MMAA (ENSBTAG00000012800) #31	ENSBTAG00000049365 #32	ZNF827 (ENSBTAG00000012738) #33	LSM6 (ENSBTAG00000014060) #34	REELD1 (ENSBTAG00000054105)	SLC10A7 (ENSBTAG00000034522) #35	POU4F2 (ENSBTAG00000005648) #37
American bison	MODERN SPECIES	3262											INPP4B (ENSBBBG00000005899) #20	ENSBBBG00000022302	ENSBBBG00000022272	USP38 (ENSBBBG00000022265) #21	ENSBBBG00000022239	GAB1 (ENSBBBG00000022226) #22	SMARCA5 (ENSBBBG00000022167) #23	ENSBBBG00000022121	ENSBBBG00000005838
Siberian musk deer	MODERN SPECIES	198	ENSMMSG00000001780	MAML3 (ENSMMSG00000001791)	SCOC (ENSMMSG00000001826) #10	CLGN (ENSMMSG00000001862) #11	MGAT4D (ENSMMSG00000001904) #12	ELMOD2 (ENSMMSG00000001964) #13	UCP1 (ENSMMSG00000001989) #14	TBC1D9 (ENSMMSG00000002010) #15	RNF150 (ENSMMSG00000002074) #17	ENSMMSG00000002114	ZNF330 (ENSMMSG00000002124) #18	IL15 (ENSMMSG00000002153) #19	INPP4B (ENSMMSG00000002208) #20	USP38 (ENSMMSG00000002337) #21	ENSMMSG00000002368	GAB1 (ENSMMSG00000002392) #22	ENSMMSG00000002473 #23
Yarkand deer	MODERN SPECIES	28	ENSCHYG00000000146 #10	CLGN (ENSCHYG00000000178) #11	MGAT4D (ENSCHYG00000000222) #12	ELMOD2 (ENSCHYG00000000281) #13	ENSCHYG00000000307	UCP1 (ENSCHYG00000000315) #14	TBC1D9 (ENSCHYG00000000347) #15	RNF150 (ENSCHYG00000000469) #17	ZNF330 (ENSCHYG00000000564) #18	IL15 (ENSCHYG00000000606) #19	ENSCHYG00000000643	INPP4B (ENSCHYG00000000675) #20	ENSCHYG00000000800	USP38 (ENSCHYG00000000822) #21	ENSCHYG00000000861	GAB1 (ENSCHYG00000000879) #22	SMARCA5 (ENSCHYG00000000935) #23	FREM3 (ENSCHYG00000001026) #24	HHIP (ENSCHYG00000001103) #26	ANAPC10 (ENSCHYG00000001160) #27	ABCE1 (ENSCHYG00000001201) #28	OTUD4 (ENSCHYG00000001224)	SMAD1 (ENSCHYG00000001287) #30	MMAA (ENSCHYG00000001302) #31	C4orf51 (ENSCHYG00000001340) #32	ZNF827 (ENSCHYG00000001410) #33	ENSCHYG00000001720 #34	REELD1 (ENSCHYG00000001740)	SLC10A7 (ENSCHYG00000001854) #35	POU4F2 (ENSCHYG00000002171) #37	TTC29 (ENSCHYG00000002186)
Camelidae	ANCESTRAL SPECIES	20	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000185087	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Arabian camel	MODERN SPECIES	11	MGST2 (ENSCDRG00005001316)	MAML3 (ENSCDRG00005001298)	SCOC (ENSCDRG00005001274) #10	CLGN (ENSCDRG00005001251) #11	MGAT4D (ENSCDRG00005001126) #12	ELMOD2 (ENSCDRG00005001082) #13	UCP1 (ENSCDRG00005001056) #14	ENSCDRG00005001035	TBC1D9 (ENSCDRG00005000929) #15	RNF150 (ENSCDRG00005000887) #17	ZNF330 (ENSCDRG00005000859) #18	IL15 (ENSCDRG00005000841) #19	INPP4B (ENSCDRG00005000441) #20	ENSCDRG00005000327	USP38 (ENSCDRG00005000298) #21	GAB1 (ENSCDRG00005000265) #22	ENSCDRG00005000246	SMARCA5 (ENSCDRG00005000105) #23	FREM3 (ENSCDRG00005000076) #24	HHIP (ENSCDRG00005000052) #26	ANAPC10 (ENSCDRG00005000035) #27	ABCE1 (ENSCDRG00005000029) #28	OTUD4 (ENSCDRG00005000022)	SMAD1 (ENSCDRG00005000018) #30	MMAA (ENSCDRG00005020233) #31	C4orf51 (ENSCDRG00005020225) #32	ZNF827 (ENSCDRG00005020126) #33	LSM6 (ENSCDRG00005020097) #34	REELD1 (ENSCDRG00005020091)	SLC10A7 (ENSCDRG00005020015) #35	POU4F2 (ENSCDRG00005019973) #37
Alpaca	MODERN SPECIES	3508																GAB1 (ENSVPAG00000008795) #22
Atlantogenata	ANCESTRAL SPECIES	49	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Xenarthra	ANCESTRAL SPECIES	87	ENSGT00940000157090	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00950000183201.b.a.b	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23
Armadillo	MODERN SPECIES	2885	MGST2 (ENSDNOG00000034606)	MAML3 (ENSDNOG00000002937)	ENSDNOG00000046815	SCOC (ENSDNOG00000030600) #10	CLGN (ENSDNOG00000004054) #11	ENSDNOG00000038747 #12	ELMOD2 (ENSDNOG00000035842) #13	TBC1D9 (ENSDNOG00000005384) #15	RNF150 (ENSDNOG00000038812) #17	ZNF330 (ENSDNOG00000048527) #18	ENSDNOG00000041774	IL15 (ENSDNOG00000034678) #19	INPP4B (ENSDNOG00000046642) #20	USP38 (ENSDNOG00000043607) #21	ENSDNOG00000045535	GAB1 (ENSDNOG00000019599) #22	SMARCA5 (ENSDNOG00000009158) #23
Sloth	MODERN SPECIES	959																GAB1 (ENSCHOG00000004704) #22
Afrotheria	ANCESTRAL SPECIES	93											ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472
Afrotheria_a	ANCESTRAL SPECIES	97											ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201	ENSGT00940000158472
Elephant	MODERN SPECIES	436											RNF150 (ENSLAFG00000002690) #17	ZNF330 (ENSLAFG00000002230) #18	IL15 (ENSLAFG00000008638) #19	INPP4B (ENSLAFG00000017626) #20	USP38 (ENSLAFG00000015972) #21	GAB1 (ENSLAFG00000002429) #22	SMARCA5 (ENSLAFG00000007795) #23	HHIP (ENSLAFG00000010367) #26	ANAPC10 (ENSLAFG00000009176) #27	ABCE1 (ENSLAFG00000017970) #28	OTUD4 (ENSLAFG00000011317)	SMAD1 (ENSLAFG00000018345) #30	MMAA (ENSLAFG00000031958) #31	ZNF827 (ENSLAFG00000029831) #33	LSM6 (ENSLAFG00000001952) #34	SLC10A7 (ENSLAFG00000000502) #35	POU4F2 (ENSLAFG00000001505) #37	TTC29 (ENSLAFG00000007613)	ENSLAFG00000026497	EDNRA (ENSLAFG00000008408)	TMEM184C (ENSLAFG00000030924)
Hyrax	MODERN SPECIES	880																GAB1 (ENSPCAG00000015672) #22
Tenrec	MODERN SPECIES	8971																GAB1 (ENSETEG00000000599) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Opossum	MODERN SPECIES	4	SETD7 (ENSMODG00000000122)	MGST2 (ENSMODG00000025529)	ENSMODG00000051069	ENSMODG00000038155	SCOC (ENSMODG00000025528) #10	CLGN (ENSMODG00000000160) #11	ENSMODG00000025527 #12	ELMOD2 (ENSMODG00000024910) #13	UCP1 (ENSMODG00000000172) #14	TBC1D9 (ENSMODG00000000209) #15	ZNF330 (ENSMODG00000000223) #18	IL15 (ENSMODG00000041399) #19	INPP4B (ENSMODG00000000308) #20	ENSMODG00000029399	USP38 (ENSMODG00000000319) #21	GAB1 (ENSMODG00000000336) #22	SMARCA5 (ENSMODG00000000391) #23	ENSMODG00000000417 #24	ENSMODG00000027513	HHIP (ENSMODG00000000432) #26	ENSMODG00000027672	ANAPC10 (ENSMODG00000000439) #27	ABCE1 (ENSMODG00000000465) #28	OTUD4 (ENSMODG00000000487)	SMAD1 (ENSMODG00000000500) #30	MMAA (ENSMODG00000000508) #31	ENSMODG00000046196	ZNF827 (ENSMODG00000000520) #33	LSM6 (ENSMODG00000039383) #34	ENSMODG00000000547	SLC10A7 (ENSMODG00000000522) #35
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.c #17	ENSGT00940000156171.d #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00520000060562 #32	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611
Diprotodontia	ANCESTRAL SPECIES	53	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.c #17	ENSGT00940000156171.d #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Diprotodontia_a	ANCESTRAL SPECIES	50	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.c #17	ENSGT00940000156171.d #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Common wonbat	MODERN SPECIES	1022		MGST2 (ENSVURG00010009730)	MAML3 (ENSVURG00010009748)	SCOC (ENSVURG00010009766) #10	CLGN (ENSVURG00010009814) #11	ENSVURG00010009862 #12	ELMOD2 (ENSVURG00010009881) #13	UCP1 (ENSVURG00010009888) #14	TBC1D9 (ENSVURG00010009910) #15	RNF150 (ENSVURG00010009942) #17	ENSVURG00010010021 #17	ZNF330 (ENSVURG00010010035) #18	IL15 (ENSVURG00010010052) #19	INPP4B (ENSVURG00010010079) #20	USP38 (ENSVURG00010010143) #21	GAB1 (ENSVURG00010010165) #22	SMARCA5 (ENSVURG00010010208) #23	ENSVURG00010010267 #24	ENSVURG00010010354	ENSVURG00010010360	HHIP (ENSVURG00010010374) #26	ANAPC10 (ENSVURG00010010401) #27	ABCE1 (ENSVURG00010010434) #28	OTUD4 (ENSVURG00010010453)	SMAD1 (ENSVURG00010010474) #30	MMAA (ENSVURG00010010489) #31	ZNF827 (ENSVURG00010010514) #33	LSM6 (ENSVURG00010010584) #34	ENSVURG00010010563	SLC10A7 (ENSVURG00010010610) #35	POU4F2 (ENSVURG00010010622) #37
koala	MODERN SPECIES	36	IL1RAPL1 (ENSPCIG00000020933)	ENSPCIG00000036290	ENSPCIG00000020937	ENSPCIG00000004645 #10	CLGN (ENSPCIG00000004618) #11	ENSPCIG00000004610 #12	ELMOD2 (ENSPCIG00000004606) #13	UCP1 (ENSPCIG00000023329) #14	TBC1D9 (ENSPCIG00000016433) #15	RNF150 (ENSPCIG00000022120) #17	ZNF330 (ENSPCIG00000022112) #18	IL15 (ENSPCIG00000009548) #19	INPP4B (ENSPCIG00000035956) #20	ENSPCIG00000003895	USP38 (ENSPCIG00000003885) #21	GAB1 (ENSPCIG00000003901) #22	SMARCA5 (ENSPCIG00000003926) #23	ENSPCIG00000002997 #24	HHIP (ENSPCIG00000003990) #26
Wallaby	MODERN SPECIES	1845																GAB1 (ENSMEUG00000004113) #22
Tasmanian devil	MODERN SPECIES	5	RAB33B (ENSSHAG00000023446)	SETD7 (ENSSHAG00000000798)	MGST2 (ENSSHAG00000026843)	MAML3 (ENSSHAG00000030735)	SCOC (ENSSHAG00000003474) #10	CLGN (ENSSHAG00000001719) #11	ENSSHAG00000001841 #12	ELMOD2 (ENSSHAG00000018184) #13	UCP1 (ENSSHAG00000026436) #14	TBC1D9 (ENSSHAG00000024926) #15	RNF150 (ENSSHAG00000028359) #17	ZNF330 (ENSSHAG00000032038) #18	IL15 (ENSSHAG00000023836) #19	INPP4B (ENSSHAG00000015055) #20	USP38 (ENSSHAG00000011121) #21	GAB1 (ENSSHAG00000009133) #22	SMARCA5 (ENSSHAG00000008464) #23	ENSSHAG00000007475 #24	HHIP (ENSSHAG00000011890) #26	ANAPC10 (ENSSHAG00000009867) #27	ABCE1 (ENSSHAG00000009721) #28	OTUD4 (ENSSHAG00000009272)	SMAD1 (ENSSHAG00000006387) #30	MMAA (ENSSHAG00000004904) #31	ENSSHAG00000002949 #32	ZNF827 (ENSSHAG00000022259) #33	LSM6 (ENSSHAG00000030833) #34	SLC10A7 (ENSSHAG00000021517) #35	POU4F2 (ENSSHAG00000031646) #37	TTC29 (ENSSHAG00000012136)	EDNRA (ENSSHAG00000021466)
Platypus	MODERN SPECIES	3	RAB33B (ENSOANG00000036558)	SETD7 (ENSOANG00000015287)	MGST2 (ENSOANG00000015288)	ENSOANG00000015289	ENSOANG00000051041 #10	CLGN (ENSOANG00000015291) #11	ENSOANG00000015292 #12	ELMOD2 (ENSOANG00000015293) #13	UCP1 (ENSOANG00000015294) #14	TBC1D9 (ENSOANG00000013540) #15	RNF150 (ENSOANG00000050448) #17	ZNF330 (ENSOANG00000013166) #18	ENSOANG00000047662 #19	INPP4B (ENSOANG00000013164) #20	USP38 (ENSOANG00000013926) #21	GAB1 (ENSOANG00000013925) #22	SMARCA5 (ENSOANG00000013921) #23	HHIP (ENSOANG00000013920) #26	ANAPC10 (ENSOANG00000013919) #27	ABCE1 (ENSOANG00000013918) #28	OTUD4 (ENSOANG00000038671)	SMAD1 (ENSOANG00000006538) #30	MMAA (ENSOANG00000006537) #31	ENSOANG00000046734 #32	ZNF827 (ENSOANG00000006534) #33	LSM6 (ENSOANG00000045062) #34	ENSOANG00000036251	SLC10A7 (ENSOANG00000006896) #35	POU4F2 (ENSOANG00000039675) #37	ENSOANG00000005261	EDNRA (ENSOANG00000005262)
Sauria	ANCESTRAL SPECIES	6	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Aves	ANCESTRAL SPECIES	3	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Neognathae	ANCESTRAL SPECIES	5	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01030000239211
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000157583	ENSGT00940000160856	ENSGT00390000017405	ENSGT00510000046787.e.a	ENSGT00730000111375	ENSGT00390000002485	ENSGT00390000010702	ENSGT00940000173410	ENSGT00390000002509	ENSGT00940000159025	ENSGT00940000162658.a.b.a	ENSGT00940000157329.u.a	ENSGT00940000157329.u.b	ENSGT00940000153771.B
Great tit	MODERN SPECIES	23	RAB33B (ENSPMJG00000008008)	ENSPMJG00000008009	SETD7 (ENSPMJG00000008010)	MAML3 (ENSPMJG00000008093)	SCOC (ENSPMJG00000008094) #10	CLGN (ENSPMJG00000008161) #11	MGAT4D (ENSPMJG00000008164) #12	ELMOD2 (ENSPMJG00000008165) #13	TBC1D9 (ENSPMJG00000008167) #15	RNF150 (ENSPMJG00000008224) #17	ENSPMJG00000008225	ZNF330 (ENSPMJG00000008227) #18	IL15 (ENSPMJG00000008228) #19	INPP4B (ENSPMJG00000008257) #20	USP38 (ENSPMJG00000008289) #21	GAB1 (ENSPMJG00000008314) #22	SMARCA5 (ENSPMJG00000008316) #23	KLHL8 (ENSPMJG00000008322)	ENSPMJG00000008324	ENSPMJG00000008325	NUDT9 (ENSPMJG00000008327)	SPARCL1 (ENSPMJG00000008329)	DMP1 (ENSPMJG00000008332)	IBSP (ENSPMJG00000008335)	ENSPMJG00000008336	ENSPMJG00000008338	SPP1 (ENSPMJG00000008342)	PKD2 (ENSPMJG00000008367)	ABCG2 (ENSPMJG00000008371)	ENSPMJG00000008375	PLAC8 (ENSPMJG00000008376)
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a.t	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171.b #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587.i #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000157583	ENSGT00940000160856	ENSGT00390000017405	ENSGT00510000046787.e.a	ENSGT00940000173785	ENSGT00390000002485	ENSGT00940000173410	ENSGT00390000002509	ENSGT00940000159025	ENSGT00940000162658.a.b.a	ENSGT00940000157329.u.a	ENSGT00940000157329.u.b	ENSGT00940000153771.B	ENSGT00390000004874.a.b
Passeriformes_g	ANCESTRAL SPECIES	59	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a.t	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171.b #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587.i #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23
Medium ground finch	MODERN SPECIES	156	RAB33B (ENSGFOG00000004877)	ENSGFOG00000004883	SETD7 (ENSGFOG00000004890)	ENSGFOG00000004897	ENSGFOG00000004903	SCOC (ENSGFOG00000004919) #10	CLGN (ENSGFOG00000004932) #11	MGAT4D (ENSGFOG00000004985) #12	ELMOD2 (ENSGFOG00000005110) #13	TBC1D9 (ENSGFOG00000005171) #15	RNF150 (ENSGFOG00000006804) #17	ZNF330 (ENSGFOG00000006807) #18	INPP4B (ENSGFOG00000006820) #20	IL15 (ENSGFOG00000006861) #19	USP38 (ENSGFOG00000006876) #21	GAB1 (ENSGFOG00000006892) #22	SMARCA5 (ENSGFOG00000006931) #23
Passeroidea	ANCESTRAL SPECIES	61	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a.t	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171.b #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587.i #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23
Zebra finch	MODERN SPECIES	25	NUDT9 (ENSTGUG00000002249)	HSD17B11 (ENSTGUG00000002260)	KLHL8 (ENSTGUG00000002275)	ENSTGUG00000002283	MAML3 (ENSTGUG00000002284)	SCOC (ENSTGUG00000026865) #10	ENSTGUG00000002287 #12	ELMOD2 (ENSTGUG00000028132) #13	TBC1D9 (ENSTGUG00000002325) #15	RNF150 (ENSTGUG00000029099) #17	ZNF330 (ENSTGUG00000002360) #18	ENSTGUG00000002368	ENSTGUG00000025612 #20	INPP4B (ENSTGUG00000021408) #20	USP38 (ENSTGUG00000002389) #21	GAB1 (ENSTGUG00000002400) #22	SMARCA5 (ENSTGUG00000002408) #23	SETD7 (ENSTGUG00000028538)	RAB33B (ENSTGUG00000022994)	NAA15 (ENSTGUG00000002442)	ENSTGUG00000019461	ELF2 (ENSTGUG00000002458)	NOCT (ENSTGUG00000002465)	ENSTGUG00000004886	WDFY3 (ENSTGUG00000002468)	PPM1K (ENSTGUG00000002504)	MAB21L2 (ENSTGUG00000002558)	LRBA (ENSTGUG00000002514)	DCLK2 (ENSTGUG00000002559)	NR3C2 (ENSTGUG00000002577)	ARHGAP10 (ENSTGUG00000002594)
Common canary	MODERN SPECIES	48	NAA15 (ENSSCAG00000012999)	RAB33B (ENSSCAG00000012996)	ENSSCAG00000012990	SETD7 (ENSSCAG00000012985)	MAML3 (ENSSCAG00000012979)	SCOC (ENSSCAG00000012976) #10	CLGN (ENSSCAG00000012966) #11	MGAT4D (ENSSCAG00000012957) #12	ELMOD2 (ENSSCAG00000012951) #13	TBC1D9 (ENSSCAG00000012722) #15	RNF150 (ENSSCAG00000012679) #17	ZNF330 (ENSSCAG00000012672) #18	IL15 (ENSSCAG00000012668) #19	INPP4B (ENSSCAG00000012655) #20	USP38 (ENSSCAG00000012638) #21	GAB1 (ENSSCAG00000012630) #22	ENSSCAG00000012622	ENSSCAG00000012621	ENSSCAG00000012620	SMARCA5 (ENSSCAG00000012608) #23
Flycatcher	MODERN SPECIES	22	RAB33B (ENSFALG00000023528)	ENSFALG00000004889	SETD7 (ENSFALG00000004893)	MAML3 (ENSFALG00000004900)	SCOC (ENSFALG00000027344) #10	CLGN (ENSFALG00000004907) #11	MGAT4D (ENSFALG00000004911) #12	ELMOD2 (ENSFALG00000004921) #13	TBC1D9 (ENSFALG00000004931) #15	ENSFALG00000004942 #17	ENSFALG00000027544 #17	ZNF330 (ENSFALG00000022973) #18	IL15 (ENSFALG00000027447) #19	INPP4B (ENSFALG00000004964) #20	USP38 (ENSFALG00000004974) #21	GAB1 (ENSFALG00000004978) #22	SMARCA5 (ENSFALG00000004987) #23	KLHL8 (ENSFALG00000005003)	HSD17B11 (ENSFALG00000005021)	NUDT9 (ENSFALG00000024339)	SPARCL1 (ENSFALG00000005055)	ENSFALG00000027885	IBSP (ENSFALG00000005087)	ENSFALG00000025272	ENSFALG00000026766	ENSFALG00000027951	SPP1 (ENSFALG00000005111)	PKD2 (ENSFALG00000005139)	ENSFALG00000025706	ENSFALG00000023090	ABCG2 (ENSFALG00000005172)
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01030000239211
Golden eagle	MODERN SPECIES		ENSACCG00020004643	SETD7 (ENSACCG00020004635)	MGST2 (ENSACCG00020004630)	MAML3 (ENSACCG00020004615)	SCOC (ENSACCG00020004596) #10	CLGN (ENSACCG00020004573) #11	MGAT4D (ENSACCG00020004548) #12	ELMOD2 (ENSACCG00020004532) #13	TBC1D9 (ENSACCG00020004481) #15	RNF150 (ENSACCG00020004420) #17	ZNF330 (ENSACCG00020004408) #18	IL15 (ENSACCG00020004400) #19	INPP4B (ENSACCG00020004385) #20	ENSACCG00020004358	USP38 (ENSACCG00020004349) #21	GAB1 (ENSACCG00020004329) #22	SMARCA5 (ENSACCG00020004298) #23	FREM3 (ENSACCG00020004273) #24	HHIP (ENSACCG00020004238) #26	ANAPC10 (ENSACCG00020004217) #27	ABCE1 (ENSACCG00020004201) #28	OTUD4 (ENSACCG00020004184)	SMAD1 (ENSACCG00020004172) #30	MMAA (ENSACCG00020004165) #31	ZNF827 (ENSACCG00020004140) #33	LSM6 (ENSACCG00020004118) #34	REELD1 (ENSACCG00020004107)	SLC10A7 (ENSACCG00020004093) #35	POU4F2 (ENSACCG00020004083) #37	TTC29 (ENSACCG00020004074)	ENSACCG00020004060
Kakapo	MODERN SPECIES	24	SETD7 (ENSSHBG00005019529)	MGST2 (ENSSHBG00005019528)	MAML3 (ENSSHBG00005019526)	SCOC (ENSSHBG00005019524) #10	CLGN (ENSSHBG00005019521) #11	ENSSHBG00005019516 #12	ENSSHBG00005019510 #12	ELMOD2 (ENSSHBG00005019507) #13	TBC1D9 (ENSSHBG00005019503) #15	RNF150 (ENSSHBG00005019495) #17	ZNF330 (ENSSHBG00005019490) #18	IL15 (ENSSHBG00005019486) #19	INPP4B (ENSSHBG00005019479) #20	ENSSHBG00005019474	USP38 (ENSSHBG00005019470) #21	GAB1 (ENSSHBG00005019461) #22	SMARCA5 (ENSSHBG00005017362) #23	HHIP (ENSSHBG00005017242) #26	ANAPC10 (ENSSHBG00005017234) #27	ABCE1 (ENSSHBG00005017221) #28	OTUD4 (ENSSHBG00005017205)	SMAD1 (ENSSHBG00005017190) #30	MMAA (ENSSHBG00005017186) #31	ZNF827 (ENSSHBG00005017172) #33	LSM6 (ENSSHBG00005017165) #34	REELD1 (ENSSHBG00005017158)	SLC10A7 (ENSSHBG00005017154) #35	POU4F2 (ENSSHBG00005017150) #37	TTC29 (ENSSHBG00005017065)	EDNRA (ENSSHBG00005017037)	TMEM184C (ENSSHBG00005017025)
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Anatidae	ANCESTRAL SPECIES	2	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Pink-footed goose	MODERN SPECIES	122	SETD7 (ENSABRG00000013691)	MGST2 (ENSABRG00000013826)	MAML3 (ENSABRG00000013850)	SCOC (ENSABRG00000013854) #10	CLGN (ENSABRG00000013894) #11	MGAT4D (ENSABRG00000014024) #12	ENSABRG00000014035 #13	ENSABRG00000014042 #13	TBC1D9 (ENSABRG00000014115) #15	RNF150 (ENSABRG00000014668) #17	ZNF330 (ENSABRG00000014702) #18	IL15 (ENSABRG00000014724) #19	INPP4B (ENSABRG00000014770) #20	ENSABRG00000014915	USP38 (ENSABRG00000014917) #21	GAB1 (ENSABRG00000014918) #22	SMARCA5 (ENSABRG00000014923) #23
Duck	MODERN SPECIES	22	RAB33B (ENSAPLG00000022797)	ENSAPLG00000027541	SETD7 (ENSAPLG00000007008)	MGST2 (ENSAPLG00000007262)	MAML3 (ENSAPLG00000007272)	SCOC (ENSAPLG00000023909) #10	CLGN (ENSAPLG00000007372) #11	MGAT4D (ENSAPLG00000007550) #12	ELMOD2 (ENSAPLG00000008211) #13	TBC1D9 (ENSAPLG00000008419) #15	RNF150 (ENSAPLG00000009408) #17	ZNF330 (ENSAPLG00000009489) #18	IL15 (ENSAPLG00000004865) #19	INPP4B (ENSAPLG00000008033) #20	USP38 (ENSAPLG00000019928) #21	GAB1 (ENSAPLG00000008645) #22	SMARCA5 (ENSAPLG00000009206) #23	ENSAPLG00000029085	HHIP (ENSAPLG00000009975) #26	ANAPC10 (ENSAPLG00000010264) #27	ABCE1 (ENSAPLG00000010315) #28	OTUD4 (ENSAPLG00000011619)	SMAD1 (ENSAPLG00000012107) #30	MMAA (ENSAPLG00000012279) #31	ZNF827 (ENSAPLG00000012322) #33	LSM6 (ENSAPLG00000012594) #34	REELD1 (ENSAPLG00000012613)	SLC10A7 (ENSAPLG00000012487) #35	POU4F2 (ENSAPLG00000017255) #37	TTC29 (ENSAPLG00000012616)	EDNRA (ENSAPLG00000012799)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Japanese quail	MODERN SPECIES	22	RAB33B (ENSCJPG00005001138)	ENSCJPG00005001141	SETD7 (ENSCJPG00005001153)	MGST2 (ENSCJPG00005001427)	MAML3 (ENSCJPG00005001430)	SCOC (ENSCJPG00005001434) #10	CLGN (ENSCJPG00005001437) #11	MGAT4D (ENSCJPG00005001445) #12	ELMOD2 (ENSCJPG00005001450) #13	TBC1D9 (ENSCJPG00005001456) #15	RNF150 (ENSCJPG00005001471) #17	ZNF330 (ENSCJPG00005001476) #18	IL15 (ENSCJPG00005001485) #19	INPP4B (ENSCJPG00005001499) #20	USP38 (ENSCJPG00005001552) #21	GAB1 (ENSCJPG00005001717) #22	SMARCA5 (ENSCJPG00005001731) #23	ENSCJPG00005001744	HHIP (ENSCJPG00005001754) #26	ANAPC10 (ENSCJPG00005001761) #27	ABCE1 (ENSCJPG00005001766) #28	OTUD4 (ENSCJPG00005001775)	SMAD1 (ENSCJPG00005001782) #30	MMAA (ENSCJPG00005001787) #31	ZNF827 (ENSCJPG00005001796) #33	LSM6 (ENSCJPG00005001811) #34	SLC10A7 (ENSCJPG00005001820) #35	REELD1 (ENSCJPG00005001844)	POU4F2 (ENSCJPG00005001849) #37	TTC29 (ENSCJPG00005001874)	EDNRA (ENSCJPG00005001937)
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Turkey	MODERN SPECIES	24	ENSMGAG00000002901	SETD7 (ENSMGAG00000002907)	MGST2 (ENSMGAG00000002920)	MAML3 (ENSMGAG00000002925)	SCOC (ENSMGAG00000002939) #10	CLGN (ENSMGAG00000002949) #11	MGAT4D (ENSMGAG00000002979) #12	ENSMGAG00000019878	ELMOD2 (ENSMGAG00000003053) #13	TBC1D9 (ENSMGAG00000003086) #15	RNF150 (ENSMGAG00000003272) #17	ZNF330 (ENSMGAG00000003187) #18	IL15 (ENSMGAG00000003247) #19	INPP4B (ENSMGAG00000003288) #20	USP38 (ENSMGAG00000003451) #21	GAB1 (ENSMGAG00000003485) #22	SMARCA5 (ENSMGAG00000003517) #23	HHIP (ENSMGAG00000003569) #26	ANAPC10 (ENSMGAG00000003629) #27	ABCE1 (ENSMGAG00000003637) #28	OTUD4 (ENSMGAG00000003693)	SMAD1 (ENSMGAG00000003725) #30	MMAA (ENSMGAG00000003763) #31	ZNF827 (ENSMGAG00000003772) #33	SLC10A7 (ENSMGAG00000003821) #35	LSM6 (ENSMGAG00000022049) #34	REELD1 (ENSMGAG00000003813)	TTC29 (ENSMGAG00000003844)	EDNRA (ENSMGAG00000003853)	TMEM184C (ENSMGAG00000003938)	PRMT9 (ENSMGAG00000003975)
Chicken	MODERN SPECIES	33	RAB33B (ENSGALG00010008534)	ENSGALG00010009109	SETD7 (ENSGALG00010009114)	MGST2 (ENSGALG00010010107)	MAML3 (ENSGALG00010009141)	SCOC (ENSGALG00010009127) #10	CLGN (ENSGALG00010009166) #11	MGAT4D (ENSGALG00010009259) #12	ELMOD2 (ENSGALG00010009279) #13	TBC1D9 (ENSGALG00010009306) #15	RNF150 (ENSGALG00010009323) #17	ZNF330 (ENSGALG00010009337) #18	IL15 (ENSGALG00010009362) #19	INPP4B (ENSGALG00010009381) #20	USP38 (ENSGALG00010007885) #21	GAB1 (ENSGALG00010007898) #22	SMARCA5 (ENSGALG00010009411) #23	ANAPC10 (ENSGALG00010006323) #27	HHIP (ENSGALG00010006341) #26	ABCE1 (ENSGALG00010006353) #28	OTUD4 (ENSGALG00010006387)	SMAD1 (ENSGALG00010006404) #30	MMAA (ENSGALG00010006434) #31	ZNF827 (ENSGALG00010006506) #33	LSM6 (ENSGALG00010006526) #34	REELD1 (ENSGALG00010006530)	SLC10A7 (ENSGALG00010006564) #35	POU4F2 (ENSGALG00010006572) #37	TTC29 (ENSGALG00010006585)	EDNRA (ENSGALG00010006602)	TMEM184C (ENSGALG00010006614)
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	1080	RAB33B (ENSSCUG00000016629)	ENSSCUG00000016628	SETD7 (ENSSCUG00000016627)	MGST2 (ENSSCUG00000016624)	MAML3 (ENSSCUG00000016623)	SCOC (ENSSCUG00000016619) #10	CLGN (ENSSCUG00000016617) #11	MGAT4D (ENSSCUG00000016615) #12	ELMOD2 (ENSSCUG00000016613) #13	TBC1D9 (ENSSCUG00000016598) #15	RNF150 (ENSSCUG00000016590) #17	ZNF330 (ENSSCUG00000016586) #18	IL15 (ENSSCUG00000016583) #19	INPP4B (ENSSCUG00000016573) #20	USP38 (ENSSCUG00000016550) #21	ENSSCUG00000016537 #22	SMARCA5 (ENSSCUG00000016528) #23	FREM3 (ENSSCUG00000016516) #24	HHIP (ENSSCUG00000016498) #26	ANAPC10 (ENSSCUG00000016484) #27	ABCE1 (ENSSCUG00000016400) #28	OTUD4 (ENSSCUG00000016370)	SMAD1 (ENSSCUG00000016368) #30	MMAA (ENSSCUG00000016367) #31	ZNF827 (ENSSCUG00000016361) #33	LSM6 (ENSSCUG00000016349) #34	REELD1 (ENSSCUG00000016346)	SLC10A7 (ENSSCUG00000016344) #35	TTC29 (ENSSCUG00000016339)	EDNRA (ENSSCUG00000016332)	TMEM184C (ENSSCUG00000016330)
African ostrich	MODERN SPECIES	695										ORC4 (ENSSCUG00000013987)	ACVR2A (ENSSCUG00000013989)	ZEB2 (ENSSCUG00000014041)	GTDC1 (ENSSCUG00000014063)	ARHGAP15 (ENSSCUG00000014071)	KYNU (ENSSCUG00000014075)	ENSSCUG00000014086 #22	LRP1B (ENSSCUG00000014116)	ENSSCUG00000014175	NXPH2 (ENSSCUG00000014198)	SPOPL (ENSSCUG00000014202)	HNMT (ENSSCUG00000014206)	ENSSCUG00000014208	THSD7B (ENSSCUG00000014244)	CXCR4 (ENSSCUG00000014286)	DARS1 (ENSSCUG00000014287)	MCM6 (ENSSCUG00000014301)	LCT (ENSSCUG00000014317)	UBXN4 (ENSSCUG00000014319)	R3HDM1 (ENSSCUG00000014332)	ZRANB3 (ENSSCUG00000014344)	RAB3GAP1 (ENSSCUG00000014387)
Australian saltwater crocodile	MODERN SPECIES	33	SETD7 (ENSCPRG00005008154)	MGST2 (ENSCPRG00005008169)	MAML3 (ENSCPRG00005008174)	SCOC (ENSCPRG00005008197) #10	CLGN (ENSCPRG00005008203) #11	MGAT4D (ENSCPRG00005008225) #12	ENSCPRG00005008274	ELMOD2 (ENSCPRG00005008282) #13	TBC1D9 (ENSCPRG00005008297) #15	RNF150 (ENSCPRG00005008334) #17	ZNF330 (ENSCPRG00005008341) #18	IL15 (ENSCPRG00005008351) #19	INPP4B (ENSCPRG00005008369) #20	ENSCPRG00005008392	USP38 (ENSCPRG00005008402) #21	GAB1 (ENSCPRG00005008432) #22	SMARCA5 (ENSCPRG00005008447) #23	FREM3 (ENSCPRG00005008470) #24	HHIP (ENSCPRG00005008521) #26	ANAPC10 (ENSCPRG00005008561) #27	ABCE1 (ENSCPRG00005008562) #28	OTUD4 (ENSCPRG00005008568)	SMAD1 (ENSCPRG00005008585) #30	MMAA (ENSCPRG00005008587) #31	ZNF827 (ENSCPRG00005008589) #33	LSM6 (ENSCPRG00005008603) #34	REELD1 (ENSCPRG00005008604)	SLC10A7 (ENSCPRG00005008610) #35	POU4F2 (ENSCPRG00005008623) #37	TTC29 (ENSCPRG00005008631)	EDNRA (ENSCPRG00005008648)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827.f	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Emydidae	ANCESTRAL SPECIES	1	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827.f	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
painted turtle	MODERN SPECIES	15	ENSCPBG00000027603	ENSCPBG00000027600	ENSCPBG00000027597	MGST2 (ENSCPBG00000027595)	MAML3 (ENSCPBG00000027593)	SCOC (ENSCPBG00000027587) #10	CLGN (ENSCPBG00000027583) #11	MGAT4D (ENSCPBG00000027573) #12	ELMOD2 (ENSCPBG00000027570) #13	TBC1D9 (ENSCPBG00000027565) #15	RNF150 (ENSCPBG00000027562) #17	ZNF330 (ENSCPBG00000027560) #18	IL15 (ENSCPBG00000027557) #19	INPP4B (ENSCPBG00000027550) #20	USP38 (ENSCPBG00000027545) #21	GAB1 (ENSCPBG00000027537) #22	SMARCA5 (ENSCPBG00000027535) #23	FREM3 (ENSCPBG00000027528) #24	HHIP (ENSCPBG00000027513) #26	ANAPC10 (ENSCPBG00000027509) #27	ABCE1 (ENSCPBG00000027506) #28	OTUD4 (ENSCPBG00000027491)	SMAD1 (ENSCPBG00000027484) #30	MMAA (ENSCPBG00000027480) #31	ZNF827 (ENSCPBG00000027474) #33	LSM6 (ENSCPBG00000027472) #34	REELD1 (ENSCPBG00000027471)	SLC10A7 (ENSCPBG00000027467) #35	POU4F2 (ENSCPBG00000027464) #37	TTC29 (ENSCPBG00000027462)	EDNRA (ENSCPBG00000027407)
Three-toed box turtle	MODERN SPECIES	26	NAA15 (ENSTMTG00000013916)	RAB33B (ENSTMTG00000013931)	SETD7 (ENSTMTG00000013940)	MGST2 (ENSTMTG00000013972)	MAML3 (ENSTMTG00000013990)	SCOC (ENSTMTG00000014037) #10	CLGN (ENSTMTG00000014052) #11	MGAT4D (ENSTMTG00000014087) #12	ELMOD2 (ENSTMTG00000014113) #13	TBC1D9 (ENSTMTG00000014126) #15	RNF150 (ENSTMTG00000014159) #17	ZNF330 (ENSTMTG00000014189) #18	INPP4B (ENSTMTG00000014224) #20	ENSTMTG00000014412	USP38 (ENSTMTG00000014430) #21	GAB1 (ENSTMTG00000014459) #22	SMARCA5 (ENSTMTG00000014596) #23	FREM3 (ENSTMTG00000015372) #24	HHIP (ENSTMTG00000015480) #26	ANAPC10 (ENSTMTG00000015504) #27	ABCE1 (ENSTMTG00000015518) #28	OTUD4 (ENSTMTG00000015551)	SMAD1 (ENSTMTG00000015602) #30	MMAA (ENSTMTG00000015622) #31	ZNF827 (ENSTMTG00000015720) #33	LSM6 (ENSTMTG00000015848) #34	REELD1 (ENSTMTG00000015864)	SLC10A7 (ENSTMTG00000015880) #35	POU4F2 (ENSTMTG00000015905) #37	TTC29 (ENSTMTG00000015921)	EDNRA (ENSTMTG00000015958)
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000004827.f	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Abingdon island giant tortoise	MODERN SPECIES	1333	RGL2 (ENSCABG00000000933)	PFDN6 (ENSCABG00000000938)	B3GALT4 (ENSCABG00000000942)	WDR46 (ENSCABG00000000945)	ENSCABG00000000953	VPS52 (ENSCABG00000000975)	RING1 (ENSCABG00000001217)	HSD17B8 (ENSCABG00000001220)	SLC39A7 (ENSCABG00000001227)	RXRB (ENSCABG00000001231)	ENSCABG00000001235	ENSCABG00000001241	ENSCABG00000001256	ENSCABG00000001548	USP38 (ENSCABG00000001551) #21	GAB1 (ENSCABG00000001560) #22	SMARCA5 (ENSCABG00000001865) #23
Goode s thornscrub tortoise	MODERN SPECIES	19	NAA15 (ENSGEVG00005010283)	RAB33B (ENSGEVG00005010260)	SETD7 (ENSGEVG00005010230)	MGST2 (ENSGEVG00005010172)	MAML3 (ENSGEVG00005010075)	SCOC (ENSGEVG00005010044) #10	CLGN (ENSGEVG00005010013) #11	MGAT4D (ENSGEVG00005009968) #12	ELMOD2 (ENSGEVG00005009880) #13	TBC1D9 (ENSGEVG00005009367) #15	RNF150 (ENSGEVG00005009199) #17	ZNF330 (ENSGEVG00005009148) #18	IL15 (ENSGEVG00005009098) #19	INPP4B (ENSGEVG00005017601) #20	USP38 (ENSGEVG00005017374) #21	GAB1 (ENSGEVG00005017331) #22	SMARCA5 (ENSGEVG00005017294) #23	HHIP (ENSGEVG00005017239) #26	ANAPC10 (ENSGEVG00005017200) #27	ABCE1 (ENSGEVG00005017122) #28	OTUD4 (ENSGEVG00005017073)	SMAD1 (ENSGEVG00005017000) #30	MMAA (ENSGEVG00005016955) #31	ZNF827 (ENSGEVG00005016825) #33	LSM6 (ENSGEVG00005016801) #34	REELD1 (ENSGEVG00005016759)	SLC10A7 (ENSGEVG00005016684) #35	POU4F2 (ENSGEVG00005016654) #37	TTC29 (ENSGEVG00005016495)	ENSGEVG00005016477	EDNRA (ENSGEVG00005016442)
Chinese turtle	MODERN SPECIES	1746															USP38 (ENSPSIG00000003947) #21	GAB1 (ENSPSIG00000004057) #22	SMARCA5 (ENSPSIG00000004177) #23	HHIP (ENSPSIG00000004464) #26	ANAPC10 (ENSPSIG00000004883) #27	ABCE1 (ENSPSIG00000004953) #28	OTUD4 (ENSPSIG00000006162)	ABHD18 (ENSPSIG00000006234)	MFSD8 (ENSPSIG00000008055)	PLK4 (ENSPSIG00000008132)	ENSPSIG00000008637	ENSPSIG00000008799	HSPA4L (ENSPSIG00000009008)	SLC25A31 (ENSPSIG00000010297)	ENSPSIG00000010690	ENSPSIG00000010751	ENSPSIG00000001037
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Episquamata	ANCESTRAL SPECIES	3	ENSGT01030000235247	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Toxicofera	ANCESTRAL SPECIES	12	ENSGT01030000235247	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Elapidae	ANCESTRAL SPECIES	11	ENSGT01030000235247	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Elapidae_a	ANCESTRAL SPECIES	13	ENSGT01030000235247	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	8789																ENSLLTG00000015740 #22	SMARCA5 (ENSLLTG00000015744) #23
Blue-lipped sea krait	MODERN SPECIES	6656																ENSLLTG00000004058 #22
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT01030000235247	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Mainland tiger snake	MODERN SPECIES	24	ENSNSUG00000005909	NAA15 (ENSNSUG00000005907)	RAB33B (ENSNSUG00000005905)	SETD7 (ENSNSUG00000005904)	ENSNSUG00000005903	SCOC (ENSNSUG00000005902) #10	CLGN (ENSNSUG00000005899) #11	MGAT4D (ENSNSUG00000005895) #12	ELMOD2 (ENSNSUG00000005870) #13	TBC1D9 (ENSNSUG00000005783) #15	RNF150 (ENSNSUG00000005778) #17	ZNF330 (ENSNSUG00000005776) #18	INPP4B (ENSNSUG00000005430) #20	ENSNSUG00000005428	USP38 (ENSNSUG00000005347) #21	GAB1 (ENSNSUG00000005191) #22	SMARCA5 (ENSNSUG00000005138) #23	ENSNSUG00000005135 #24	ENSNSUG00000005129 #24	HHIP (ENSNSUG00000005097) #26	ANAPC10 (ENSNSUG00000005096) #27	ABCE1 (ENSNSUG00000005087) #28	OTUD4 (ENSNSUG00000004965)	SMAD1 (ENSNSUG00000004964) #30	MMAA (ENSNSUG00000004963) #31	ZNF827 (ENSNSUG00000004961) #33	ENSNSUG00000004960 #34	REELD1 (ENSNSUG00000004959)	SLC10A7 (ENSNSUG00000004954) #35	POU4F2 (ENSNSUG00000004949) #37	TTC29 (ENSNSUG00000004897)
Eastern brown snake	MODERN SPECIES	9	ENSPTXG00000009870	NAA15 (ENSPTXG00000009872)	RAB33B (ENSPTXG00000009873)	ENSPTXG00000009874	SETD7 (ENSPTXG00000009875)	MAML3 (ENSPTXG00000009876)	SCOC (ENSPTXG00000009878) #10	CLGN (ENSPTXG00000009879) #11	MGAT4D (ENSPTXG00000009881) #12	ELMOD2 (ENSPTXG00000009884) #13	TBC1D9 (ENSPTXG00000009886) #15	RNF150 (ENSPTXG00000009889) #17	ZNF330 (ENSPTXG00000009891) #18	INPP4B (ENSPTXG00000009897) #20	USP38 (ENSPTXG00000010129) #21	GAB1 (ENSPTXG00000010131) #22	SMARCA5 (ENSPTXG00000010134) #23	ENSPTXG00000010138 #24	ENSPTXG00000010141 #24	HHIP (ENSPTXG00000010144) #26	ANAPC10 (ENSPTXG00000010146) #27	ABCE1 (ENSPTXG00000010148) #28	OTUD4 (ENSPTXG00000010149)	SMAD1 (ENSPTXG00000010150) #30	MMAA (ENSPTXG00000010151) #31	ZNF827 (ENSPTXG00000010174) #33	LSM6 (ENSPTXG00000010189) #34	REELD1 (ENSPTXG00000010192)	SLC10A7 (ENSPTXG00000010194) #35	POU4F2 (ENSPTXG00000010196) #37	TTC29 (ENSPTXG00000010197)
Indian cobra	MODERN SPECIES	3	ENSNNAG00000003022	NAA15 (ENSNNAG00000003008)	RAB33B (ENSNNAG00000012837)	SETD7 (ENSNNAG00000012814)	ENSNNAG00000012782	ENSNNAG00000012770	SCOC (ENSNNAG00000012713) #10	CLGN (ENSNNAG00000012667) #11	MGAT4D (ENSNNAG00000012606) #12	ELMOD2 (ENSNNAG00000012545) #13	TBC1D9 (ENSNNAG00000012434) #15	RNF150 (ENSNNAG00000012408) #17	ZNF330 (ENSNNAG00000012380) #18	INPP4B (ENSNNAG00000012068) #20	USP38 (ENSNNAG00000011989) #21	GAB1 (ENSNNAG00000011879) #22	SMARCA5 (ENSNNAG00000011601) #23	FREM3 (ENSNNAG00000011252) #24	HHIP (ENSNNAG00000011159) #26	ANAPC10 (ENSNNAG00000011097) #27	ABCE1 (ENSNNAG00000010986) #28	OTUD4 (ENSNNAG00000010827)	SMAD1 (ENSNNAG00000010785) #30	MMAA (ENSNNAG00000010679) #31	ZNF827 (ENSNNAG00000010589) #33	LSM6 (ENSNNAG00000010558) #34	REELD1 (ENSNNAG00000010522)	SLC10A7 (ENSNNAG00000010445) #35	POU4F2 (ENSNNAG00000010404) #37	TTC29 (ENSNNAG00000010336)	EDNRA (ENSNNAG00000010301)
Lizard	MODERN SPECIES	4	MAML3 (ENSACAG00000002268)	SCOC (ENSACAG00000040074) #10	CLGN (ENSACAG00000002293) #11	MGAT4D (ENSACAG00000002396) #12	ENSACAG00000043952	ENSACAG00000036219	ELMOD2 (ENSACAG00000037737) #13	TBC1D9 (ENSACAG00000002504) #15	RNF150 (ENSACAG00000002648) #17	ZNF330 (ENSACAG00000002683) #18	ENSACAG00000042416	ENSACAG00000034681	INPP4B (ENSACAG00000002735) #20	USP38 (ENSACAG00000002889) #21	ENSACAG00000042595	GAB1 (ENSACAG00000002955) #22	SMARCA5 (ENSACAG00000003038) #23	FREM3 (ENSACAG00000003206) #24	ENSACAG00000044086	HHIP (ENSACAG00000003315) #26	ANAPC10 (ENSACAG00000003368) #27	ABCE1 (ENSACAG00000003386) #28	ENSACAG00000042301	OTUD4 (ENSACAG00000003512)	SMAD1 (ENSACAG00000003544) #30	MMAA (ENSACAG00000003592) #31	ZNF827 (ENSACAG00000003618) #33	ENSACAG00000038260	ENSACAG00000039453	WDR17 (ENSACAG00000005767)	SPATA4 (ENSACAG00000005859)
Laterata	ANCESTRAL SPECIES	9	ENSGT01030000235247	ENSGT00950000183174.B.a	ENSGT00940000157090	ENSGT00390000008183	ENSGT00390000004827	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000157587 #20	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Argentine black and white tegu	MODERN SPECIES	26				ENSSMRG00000019355	SCOC (ENSSMRG00000019356) #10	CLGN (ENSSMRG00000019357) #11	MGAT4D (ENSSMRG00000019358) #12	ELMOD2 (ENSSMRG00000019359) #13	ENSSMRG00000019360 #15	ENSSMRG00000019361 #15	RNF150 (ENSSMRG00000019363) #17	ZNF330 (ENSSMRG00000019365) #18	INPP4B (ENSSMRG00000019367) #20	USP38 (ENSSMRG00000019368) #21	ENSSMRG00000019369	GAB1 (ENSSMRG00000019371) #22	SMARCA5 (ENSSMRG00000019372) #23	FREM3 (ENSSMRG00000019373) #24	HHIP (ENSSMRG00000019375) #26	ANAPC10 (ENSSMRG00000000015) #27	ABCE1 (ENSSMRG00000000104) #28	OTUD4 (ENSSMRG00000000228)	SMAD1 (ENSSMRG00000000295) #30	MMAA (ENSSMRG00000000318) #31	ZNF827 (ENSSMRG00000000342) #33	LSM6 (ENSSMRG00000000427) #34	REELD1 (ENSSMRG00000000434)	SLC10A7 (ENSSMRG00000000449) #35	POU4F2 (ENSSMRG00000000474) #37	TTC29 (ENSSMRG00000000495)	EDNRA (ENSSMRG00000000571)
tuatara	MODERN SPECIES	22	MGST2 (ENSSPUG00000008078)	ENSSPUG00000008070	SCOC (ENSSPUG00000008058) #10	CLGN (ENSSPUG00000008019) #11	MGAT4D (ENSSPUG00000007992) #12	ELMOD2 (ENSSPUG00000007981) #13	TBC1D9 (ENSSPUG00000007929) #15	RNF150 (ENSSPUG00000007877) #17	ENSSPUG00000007861	ZNF330 (ENSSPUG00000007853) #18	IL15 (ENSSPUG00000007841) #19	INPP4B (ENSSPUG00000007792) #20	ENSSPUG00000007773	ENSSPUG00000007768	USP38 (ENSSPUG00000007753) #21	GAB1 (ENSSPUG00000007733) #22	SMARCA5 (ENSSPUG00000007604) #23	FREM3 (ENSSPUG00000007505) #24
Anura	ANCESTRAL SPECIES	2	ENSGT00390000008183	ENSGT00390000004827	ENSGT00940000160288.a	ENSGT00940000160288.b	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000157587 #20	ENSGT00940000158403.i #21	ENSGT00940000156801 #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000160512	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063 #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Frog	MODERN SPECIES		ENSXETG00000042487	scoc (ENSXETG00000040787) #10	clgn (ENSXETG00000014911) #11	mgat4d (ENSXETG00000014915) #12	elmod2 (ENSXETG00000014925) #13	ucp1 (ENSXETG00000014927) #14	tbc1d9 (ENSXETG00000014933) #15	rnf150 (ENSXETG00000040133) #17	znf330 (ENSXETG00000014970) #18	il15 (ENSXETG00000031411)	ENSXETG00000037336	ENSXETG00000039862	inpp4b (ENSXETG00000021313) #20	ENSXETG00000048811	usp38 (ENSXETG00000017515) #21	gab1 (ENSXETG00000017549) #22	smarca5 (ENSXETG00000017566) #23	frem3 (ENSXETG00000017590) #24	otud4 (ENSXETG00000017606)	ENSXETG00000041890	abce1 (ENSXETG00000025168) #28	ENSXETG00000048000	anapc10 (ENSXETG00000017613) #27	ENSXETG00000043193	hhip (ENSXETG00000017616) #26	smad1 (ENSXETG00000026047) #30	mmaa (ENSXETG00000023685) #31	znf827 (ENSXETG00000023684) #33	lsm6 (ENSXETG00000023683) #34	REELD1 (ENSXETG00000040617)	slc10a7 (ENSXETG00000007119) #35
Leishan spiny toad	MODERN SPECIES		SCOC (ENSLLEG00000003472) #10	CLGN (ENSLLEG00000003455) #11	MGAT4D (ENSLLEG00000003366) #12	ELMOD2 (ENSLLEG00000003353) #13	UCP1 (ENSLLEG00000003339) #14	ENSLLEG00000003334	ENSLLEG00000003329	TBC1D9 (ENSLLEG00000003273) #15	RNF150 (ENSLLEG00000003248) #17	ENSLLEG00000003230	ENSLLEG00000003221	INPP4B (ENSLLEG00000003157) #20	ENSLLEG00000003142	ENSLLEG00000003136	USP38 (ENSLLEG00000003121) #21	GAB1 (ENSLLEG00000003093) #22	SMARCA5 (ENSLLEG00000002792) #23	FREM3 (ENSLLEG00000002637) #24	ENSLLEG00000002613	HHIP (ENSLLEG00000002571) #26	ENSLLEG00000002496	ANAPC10 (ENSLLEG00000002465) #27	ABCE1 (ENSLLEG00000002437) #28	ENSLLEG00000002426	OTUD4 (ENSLLEG00000002376)	ENSLLEG00000002369	ENSLLEG00000002361	SMAD1 (ENSLLEG00000002330) #30	ENSLLEG00000002313	MMAA (ENSLLEG00000002268) #31	ZNF827 (ENSLLEG00000002204) #33
Coelacanth	MODERN SPECIES	1080															USP38 (ENSLACG00000011743) #21	GAB1 (ENSLACG00000008627) #22	SMARCA5 (ENSLACG00000007091) #23	FREM3 (ENSLACG00000001731) #24
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000156801.g #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000156801.g #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000156801.g #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000156801.g #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00940000156801.g #22
Protacanthopterygii	ANCESTRAL SPECIES	139				ENSGT00940000160529	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000160368	ENSGT00940000166038	ENSGT00940000156633.d.b	ENSGT00940000175002	ENSGT00390000004396.h	ENSGT00940000156171.h #17	ENSGT00940000157587.l.b #20	ENSGT00940000156801.g #22	ENSGT00940000162501.c.b #24	ENSGT00390000013722 #27	ENSGT00940000159922.a.b	ENSGT00940000156063.l #33	ENSGT00390000011932 #35	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a	ENSGT00940000154895.a.a	ENSGT00940000180552	ENSGT00940000153942.a.e.b	ENSGT01010000224929	ENSGT00950000182917.a.a.a.a	ENSGT00930000151042	ENSGT00940000155140.ib	ENSGT00940000158059.h
Salmoninae	ANCESTRAL SPECIES	314				ENSGT00390000005844.a.b.o	ENSGT00440000034932.a	ENSGT00940000154737.d.p	ENSGT00950000182907.a.b.a.b.b.b	ENSGT00940000155598.b	ENSGT00940000155951.b.z.b	ENSGT00940000166038.f.b.b	ENSGT00940000156633.d.b	ENSGT00940000175002	ENSGT00390000004396.h	ENSGT00940000156171.h.p.b #17	ENSGT00940000157587.l.b #20	ENSGT00940000156801.g #22	ENSGT00390000013722 #27	ENSGT00940000159922.a.b	ENSGT00940000156063.l #33	ENSGT00390000011932 #35	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a	ENSGT00940000154895.a.a	ENSGT00940000180552	ENSGT01060000248726	ENSGT01030000235123	ENSGT00940000154706.rb.a	ENSGT00950000182917.a.a.a.a	ENSGT00930000151042	ENSGT00940000155140.ib	ENSGT00940000158059.h
Salmoninae_a	ANCESTRAL SPECIES	142											ENSGT00940000166038.f.b.b	ENSGT00940000156633.d.b	ENSGT00390000004396.h	ENSGT00940000156171.h.p.b #17	ENSGT00940000157587.l.b #20	ENSGT00940000156801.g #22	ENSGT00390000013722 #27	ENSGT00940000159922.a.b	ENSGT00940000156063.l #33	ENSGT00390000011932 #35	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a	ENSGT00940000154895.a.a	ENSGT00940000155694.h.c	ENSGT00940000180552	ENSGT01060000248726	ENSGT01030000235123	ENSGT00940000154706.rb.a	ENSGT00950000182917.a.a.a.a	ENSGT00930000151042	ENSGT00940000155140.ib
Salmo	ANCESTRAL SPECIES	167				ENSGT00940000154737.d.p.c.a.a	ENSGT00950000182907.a.b.a.b.b.b	ENSGT00940000155598.b	ENSGT00940000155951.b.z.b	ENSGT00940000160368	ENSGT00940000166038.e	ENSGT00940000166038.f.a	ENSGT00940000156633.d.b	ENSGT00570000079168.b.b.b.x	ENSGT00390000004396.h	ENSGT00940000156171.h.p.b #17	ENSGT00940000157587.l.b #20	ENSGT00940000156801.g #22	ENSGT00390000013722 #27	ENSGT00940000159922.a.b	ENSGT00940000156063.l #33	ENSGT00390000011932 #35	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a
Atlantic salmon	MODERN SPECIES	176	ENSSSAG00000062196	ENSSSAG00000116359	ENSSSAG00000111754	ENSSSAG00000117820	ENSSSAG00000042977	ENSSSAG00000114580	ENSSSAG00000103115	ENSSSAG00000041887	ENSSSAG00000119040	ENSSSAG00000091474	ENSSSAG00000044632	ENSSSAG00000044618	ENSSSAG00000059157 #17	ENSSSAG00000101673	ENSSSAG00000044437 #20	ENSSSAG00000081851 #22	anapc10 (ENSSSAG00000112756) #27	ENSSSAG00000100681	smad1 (ENSSSAG00000044703) #30	ENSSSAG00000044660 #33	SLC10A7 (ENSSSAG00000045022) #35	TTC29 (ENSSSAG00000094667)	EDNRA (ENSSSAG00000045016)
River trout	MODERN SPECIES	35	prox3 (ENSSTUG00000000409)	snx15 (ENSSTUG00000000417)	ENSSTUG00000000427	ENSSTUG00000000443	ENSSTUG00000000455	ENSSTUG00000000475	CORO2A (ENSSTUG00000000483)	tec (ENSSTUG00000000587)	ENSSTUG00000000792	abcg2a (ENSSTUG00000000802)	abcg2a (ENSSTUG00000000848)	PPM1K (ENSSTUG00000001014)	ENSSTUG00000001020	ENSSTUG00000001027	rnf150b (ENSSTUG00000001037) #17	ENSSTUG00000001044 #22	anapc10 (ENSSTUG00000001055) #27	smad1 (ENSSTUG00000001091) #30	slc10a7 (ENSSTUG00000001129) #35	ENSSTUG00000001140 #33	ENSSTUG00000001154	ENSSTUG00000001161	ENSSTUG00000001170	DCLK2 (ENSSTUG00000001206)	ENSSTUG00000001298	ENSSTUG00000001328	ENSSTUG00000001350	ENSSTUG00000001365	ENSSTUG00000001370	ENSSTUG00000001386	ENSSTUG00000001393
Oncorhynchus	ANCESTRAL SPECIES	97						ENSGT00940000154737.d.p.c.a.a	ENSGT00950000182907.a.b.a.b.a	ENSGT00950000182907.a.b.a.b.b.a	ENSGT00940000155598.b	ENSGT00940000155951.b.z.a.a	ENSGT00940000166038.f.b.b	ENSGT00940000156633.d.b	ENSGT00390000004396.h	ENSGT00940000156171.h.p.b #17	ENSGT00940000157587.l.b #20	ENSGT00940000156801.g #22	ENSGT00390000013722 #27	ENSGT00940000159922.a.b	ENSGT00940000154391.a.a.f #30	ENSGT00940000156063.l #33	ENSGT00390000011932 #35	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a	ENSGT00940000154895.a.a	ENSGT00940000155694.h.c	ENSGT00940000180552	ENSGT01060000248726	ENSGT01030000235123	ENSGT00940000154706.rb.a	ENSGT00950000182917.a.a.a.a	ENSGT01050000244843.d.e.a.a.a.c.b
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000017269	ENSOMYG00000075423	ENSOMYG00000061770	ENSOMYG00000049287	ENSOMYG00000049954	ENSOMYG00000069009	ENSOMYG00000017304	ENSOMYG00000017296	ENSOMYG00000055949	ENSOMYG00000056196	ENSOMYG00000066673	ENSOMYG00000059672	ENSOMYG00000077105	rnf150b (ENSOMYG00000058101) #17	ENSOMYG00000055930 #20	ENSOMYG00000017115 #22	ENSOMYG00000017093	ENSOMYG00000017020	ENSOMYG00000061419 #30	ENSOMYG00000066761 #33	SLC10A7 (ENSOMYG00000056398) #35	TTC29 (ENSOMYG00000068359)	EDNRA (ENSOMYG00000049903)	ENSOMYG00000069996	ENSOMYG00000016974	ENSOMYG00000057274	ENSOMYG00000065655	ENSOMYG00000067664	ENSOMYG00000039464	ENSOMYG00000052699	ENSOMYG00000059525
Oncorhynchus_a	ANCESTRAL SPECIES	263																ENSGT00940000156801.g #22	ENSGT00390000013722 #27	ENSGT00940000159922.a.b	ENSGT00940000156063.l #33	ENSGT00390000011932 #35	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a	ENSGT00940000154895.a.a
Coho salmon	MODERN SPECIES	7	ENSOKIG00005013029	ENSOKIG00005013038	sgms2b (ENSOKIG00005013091)	MCUB (ENSOKIG00005013101)	CASP6 (ENSOKIG00005013126)	CFI (ENSOKIG00005013245)	ENSOKIG00005013295	ENSOKIG00005013331	ENSOKIG00005013535	ENSOKIG00005013545	ENSOKIG00005013584	ENSOKIG00005013594	ENSOKIG00005013619	ENSOKIG00005013658	ENSOKIG00005013668 ##30	ENSOKIG00005013680 #22	anapc10 (ENSOKIG00005013696) #27	ENSOKIG00005013725	ENSOKIG00005013764	ENSOKIG00005013775 #33	slc10a7 (ENSOKIG00005013797) #35	TTC29 (ENSOKIG00005013816)	ednrab (ENSOKIG00005013865)	DCLK2 (ENSOKIG00005014457)	ENSOKIG00005014831	ENSOKIG00005014841	ENSOKIG00005014864	ENSOKIG00005014868	ENSOKIG00005014882	ENSOKIG00005014940	PPM1K (ENSOKIG00005015191)
Northern pike	MODERN SPECIES	23	ENSELUG00000034018	ENSELUG00000007694	ENSELUG00000007702	ENSELUG00000027619	ENSELUG00000007677	ENSELUG00000007665	CORO2A (ENSELUG00000029366)	tec (ENSELUG00000007644)	ENSELUG00000007553	ENSELUG00000007538	abcg2a (ENSELUG00000007520)	PPM1K (ENSELUG00000007501)	ENSELUG00000007484	rnf150b (ENSELUG00000007475) #17	ENSELUG00000007423 #20	ENSELUG00000007363 #22	ENSELUG00000007276 #24	anapc10 (ENSELUG00000007131) #27	ENSELUG00000007102	smad1 (ENSELUG00000007066) #30	ENSELUG00000007025 #33	ENSELUG00000006985	ENSELUG00000032960	ENSELUG00000026641	ENSELUG00000027368	ENSELUG00000034376	slc10a7 (ENSELUG00000006934) #35	TTC29 (ENSELUG00000006899)	ednrab (ENSELUG00000006885)	ENSELUG00000006837	ENSELUG00000034170
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00940000156801.g #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000156801.g #22
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000180552	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000159922.a.b	ENSGT00940000178415	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT00940000154986.a
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT00940000177759	ENSGT00940000154986.a
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01090000260585	ENSGT00990000203723.a.b	ENSGT00390000003680.a.a.b	ENSGT01040000240648	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT00940000154986.a	ENSGT00940000177759	ENSGT00940000155598.b
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01090000260585	ENSGT00990000203723.a.b	ENSGT00390000003680.a.a.b	ENSGT01040000240648	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT00940000154986.a	ENSGT01090000260059.a.b.b.b.b.f.a.a.c.a	ENSGT00940000177950
Aplocheiloidei	ANCESTRAL SPECIES	71	ENSGT00940000165127.b	ENSGT00940000177217	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00390000003680.a.a.b	ENSGT01040000240648	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT00940000154986.a	ENSGT01090000260059.a.b.b.b.b.f.a.a.c.a	ENSGT01030000234592.A.a.b.i.a
Mangrove rivulus	MODERN SPECIES	559																ENSKMAG00000000316 #22
Turquoise killifish	MODERN SPECIES	1613	zgc:77880 (ENSNFUG00015000097)	MST4 (ENSNFUG00015000081)	FRMD7 (ENSNFUG00015002210)	ENSNFUG00015002206	dachb (ENSNFUG00015002202)	TNRC5 (ENSNFUG00015002196)	ENSNFUG00015002190	ENSNFUG00015002180	ENSNFUG00015002172	ENSNFUG00015002165	ENSNFUG00015002162	ENSNFUG00015002154	ENSNFUG00015002151	trpc5a (ENSNFUG00015001952)	ENSNFUG00015001833	ENSNFUG00015001825 #22	ENSNFUG00015001718	ENSNFUG00015001700	ENSNFUG00015001696	FAM160A1 (ENSNFUG00015001691)	ENSNFUG00015001683	ENSNFUG00015001674	ENSNFUG00015001669	ENSNFUG00015001664	ENSNFUG00015001661	DCLK2 (ENSNFUG00015001642)	TMEM184C (ENSNFUG00015001582)	EDNRAB (ENSNFUG00015001542)	SLC10A7 (ENSNFUG00015001534) #35	ENSNFUG00015001529	Nfu_g_1_019190 (ENSNFUG00015001523) #33
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01090000260585	ENSGT00990000203723.a.b	ENSGT00390000003680.a.a.b	ENSGT01040000240648.a	ENSGT01040000240648.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a.x.a	ENSGT01100000263529.a.a.a.a.b.c.a.x.b	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT00940000154986.a	ENSGT00940000177950
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01090000260585	ENSGT00990000203723.a.b	ENSGT00390000003680.a.a.b	ENSGT01040000240648.a	ENSGT01040000240648.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000156038.a.a.c	ENSGT00940000156038.a.b.b.i.a.b.b.c.a	ENSGT00940000156038.a.b.b.i.a.b.b.c.b
Poecilia	ANCESTRAL SPECIES	52	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.a.a.b	ENSGT00990000203723.a.b	ENSGT00390000003680.a.a.b	ENSGT01040000240648.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000156038.a.a.c	ENSGT00940000156038.a.b.b.i.a.b.b.c.a	ENSGT00940000156038.a.b.b.i.a.b.b.c.b
NAME_6	ANCESTRAL SPECIES	317					ENSGT00940000156187	ENSGT01090000260585	ENSGT00990000203723.a.b	ENSGT00390000003680.a.a.b	ENSGT01040000240648.a	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000156038.a.b.b.i.a.b.b.c.a	ENSGT00940000156038.a.b.b.i.a.b.b.c.b
Amazon molly	MODERN SPECIES	468	ENSPFOG00000023606	ENSPFOG00000022781	ENSPFOG00000024071	ENSPFOG00000022884	zgc:77880 (ENSPFOG00000001838)	stk26 (ENSPFOG00000001725)	ENSPFOG00000001633	dachb (ENSPFOG00000001498)	cnpy3 (ENSPFOG00000001382)	trpc5a (ENSPFOG00000001087)	ENSPFOG00000023351	ENSPFOG00000022508	ENSPFOG00000023333	ENSPFOG00000023880	ENSPFOG00000024751	ENSPFOG00000000908 #22	ENSPFOG00000000822	ENSPFOG00000000766	ENSPFOG00000023164	ENSPFOG00000021894	ENSPFOG00000000654	ENSPFOG00000000596
Sailfin molly	MODERN SPECIES	1521																ENSPLAG00000018138 #22
Guppy	MODERN SPECIES	450	gbx2 (ENSPREG00000013353)	AGAP1 (ENSPREG00000013249)	faimb (ENSPREG00000013204)	ENSPREG00000013186	INHBB (ENSPREG00000013172)	GLI2 (ENSPREG00000013102)	CLASP1 (ENSPREG00000012726)	clcn4 (ENSPREG00000012636)	zgc:77880 (ENSPREG00000012573)	ENSPREG00000012553	stk26 (ENSPREG00000012519)	ENSPREG00000012482	cnpy3 (ENSPREG00000012469)	trpc5a (ENSPREG00000012394)	ENSPREG00000012366	ENSPREG00000012351 #22	ENSPREG00000012337	ENSPREG00000012305	ENSPREG00000012285	ENSPREG00000012249	ENSPREG00000012132	ENSPREG00000011741	ENSPREG00000011653	ENSPREG00000011630	ENSPREG00000011439	ENSPREG00000011397	ENSPREG00000011374	ENSPREG00000011335	f2 (ENSPREG00000011285)	ENSPREG00000011236	ENSPREG00000011118
Platyfish	MODERN SPECIES	5	tkfc (ENSXMAG00000000517)	exoc6b (ENSXMAG00000000535)	cyp26b1 (ENSXMAG00000000554)	dysf (ENSXMAG00000000570)	pip4p1b (ENSXMAG00000000626)	ENSXMAG00000027788	ENSXMAG00000006085	ENSXMAG00000025587	zgc:77880 (ENSXMAG00000011043)	stk26 (ENSXMAG00000011031)	ENSXMAG00000026897	FRMD7 (ENSXMAG00000011030)	dachb (ENSXMAG00000021052)	cnpy3 (ENSXMAG00000011013)	trpc5a (ENSXMAG00000010977)	ENSXMAG00000010964 #22	ENSXMAG00000010935	ENSXMAG00000010934	ENSXMAG00000028315	ENSXMAG00000027906	ENSXMAG00000024693	ENSXMAG00000022807	ENSXMAG00000027982	ENSXMAG00000029567	ENSXMAG00000025109	ENSXMAG00000023843	ENSXMAG00000024961	ENSXMAG00000026137	ENSXMAG00000025573	ENSXMAG00000029283	ENSXMAG00000029067
NAME_4	ANCESTRAL SPECIES	379										ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22
Mummichog	MODERN SPECIES	1149																ENSFHEG00000021173 #22
Sheepshead minnow	MODERN SPECIES	363										zgc:77880 (ENSCVAG00000004850)	ENSCVAG00000000780	FRMD7 (ENSCVAG00000004761)	dachb (ENSCVAG00000004738)	cnpy3 (ENSCVAG00000004731)	trpc5a (ENSCVAG00000004711)	ENSCVAG00000004666 #22	ENSCVAG00000004651	ENSCVAG00000004634
Oryzias	ANCESTRAL SPECIES	21	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01090000260585.b	ENSGT00990000203723.a.b	ENSGT00390000003680.a.a.b.f	ENSGT01040000240648.c	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000156038.a.b.b.i.a.b.b.a	ENSGT00940000156038.a.b.b.i.a.b.b.b	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a.s	ENSGT01100000263529.a.a.a.a.b.c.a.t	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00940000174503	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00940000177217	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01090000260585.b	ENSGT00390000003680.a.a.b.f	ENSGT01040000240648.c	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156038.a.b.b.i.a.b.b.a.d	ENSGT00940000156801.g #22	ENSGT00940000156038.a.b.b.i.a.b.b.a.c	ENSGT00940000156038.a.b.b.i.a.b.b.b.a	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT01090000260059.a.b.b.b.b.f.a.a.c.b	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a.s	ENSGT01100000263529.a.a.a.a.b.c.a.t	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00940000174503	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000009160	tkfc (ENSOJAG00000009274)	exoc6b (ENSOJAG00000009549)	cyp26b1 (ENSOJAG00000010533)	pip4p1b (ENSOJAG00000010945)	ENSOJAG00000010955	ENSOJAG00000010969	zgc:77880 (ENSOJAG00000010978)	ENSOJAG00000010999	ENSOJAG00000011188	dachb (ENSOJAG00000011244)	cnpy3 (ENSOJAG00000011253)	trpc5a (ENSOJAG00000011288)	ENSOJAG00000011917	ENSOJAG00000012183	ENSOJAG00000012220 #22	ENSOJAG00000012237	ENSOJAG00000012265	ENSOJAG00000012278	ENSOJAG00000012285	ENSOJAG00000012294	ENSOJAG00000012316	ENSOJAG00000012341	ENSOJAG00000012371	ENSOJAG00000012375	ENSOJAG00000012383	DCLK2 (ENSOJAG00000012388)	ENSOJAG00000012425	ENSOJAG00000012441	ENSOJAG00000012459	TMEM184C (ENSOJAG00000012506)
Indian medaka	MODERN SPECIES	19	ENSOMEG00000002065	pip4p1b (ENSOMEG00000002021)	ENSOMEG00000002013	zgc:77880 (ENSOMEG00000002004)	ENSOMEG00000001996	ENSOMEG00000001977	ENSOMEG00000001970	dachb (ENSOMEG00000001968)	cnpy3 (ENSOMEG00000001956)	trpc5a (ENSOMEG00000001934)	ENSOMEG00000001899	ENSOMEG00000001841	ENSOMEG00000001774	ENSOMEG00000001673	ENSOMEG00000001635	ENSOMEG00000001591 #22	ENSOMEG00000001579	ENSOMEG00000001531	ENSOMEG00000001502	ENSOMEG00000001450	ENSOMEG00000001375	ENSOMEG00000000006	ENSOMEG00000001367	ENSOMEG00000001363	ENSOMEG00000001359	ENSOMEG00000000004	ENSOMEG00000001340	DCLK2 (ENSOMEG00000001333)	ENSOMEG00000001325	ENSOMEG00000001320	ENSOMEG00000001315
Oryzias_a	ANCESTRAL SPECIES	40															ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000156038.a.b.b.i.a.b.b.a	ENSGT00940000156038.a.b.b.i.a.b.b.b	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a.s	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT01090000260059.a.b.b.a.a.b.b.d.a
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000003325	ENSORLG00000003263	ENSORLG00000022868	ENSORLG00000023404	dachb (ENSORLG00000021850)	cnpy3 (ENSORLG00000028413)	ENSORLG00000025323	ENSORLG00000029703	atp6v0a2b (ENSORLG00000006769)	ENSORLG00000025945	ENSORLG00000028584	pik3ip1 (ENSORLG00000006788)	limk2 (ENSORLG00000006835)	trpc5a (ENSORLG00000003233)	ENSORLG00000029877	ENSORLG00000003201 #22	ENSORLG00000026642	ENSORLG00000030106	ENSORLG00000025852	ENSORLG00000025131	ENSORLG00000029973	ENSORLG00000003178	ENSORLG00000003157	ENSORLG00000025677	ENSORLG00000023182	ENSORLG00000030330	ENSORLG00000002649	ENSORLG00000026059	ENSORLG00000003113	ENSORLG00000029678	ENSORLG00000003096
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000165127.b	ENSGT00940000177217	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00940000174503	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000178504	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27
Cichlidae	ANCESTRAL SPECIES	57							ENSGT00390000003680.a.a.b	ENSGT00990000203723.b.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b	ENSGT01050000244866.D.a.d	ENSGT01030000234592.A.a.b.i.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT00940000156633.d.b	ENSGT00940000175002	ENSGT00940000163999.b.a.b.a	ENSGT00940000163999.b.a.b.b	ENSGT00390000004396.h	ENSGT00940000156171.h #17
Pseudocrenilabrinae	ANCESTRAL SPECIES	45					ENSGT00990000203723.b.a.a	ENSGT00990000203723.b.a.b	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b	ENSGT01050000244866.D.a.d.d	ENSGT01030000234592.A.a.b.i.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT00940000156633.d.b	ENSGT00940000163999.b.a.b.a.a	ENSGT00940000157587.l #20	ENSGT00950000183040.A.b.h	ENSGT00940000155128.a.b.a.a	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.b.a.b.a.c.b.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	69	ENSGT00390000005739.a.a	ENSGT00390000010554.j	ENSGT00390000015415	ENSGT00950000182924.A.a	ENSGT00990000203723.b.a.a	ENSGT00990000203723.b.a.b	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22
Haplochromini	ANCESTRAL SPECIES	80	ENSGT00390000005739.a.a	ENSGT00390000010554.j	ENSGT00390000015415	ENSGT00950000182924.A.a	ENSGT00990000203723.b.a.a	ENSGT00990000203723.b.a.b	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22
Burton s mouthbrooder	MODERN SPECIES	1010																ENSHBUG00000011723 #22
Haplochromini_A	ANCESTRAL SPECIES	84	ENSGT00390000010554.j	ENSGT00390000015415	ENSGT00950000182924.A.a	ENSGT00990000203723.b.a.a	ENSGT00990000203723.b.a.b	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT01050000244868.c.b.b.b.a	ENSGT00940000156801.g #22
Haplochromini_B	ANCESTRAL SPECIES	97	ENSGT00940000165127.b	ENSGT00950000183169.A.b.e.a.a.a.b.a.a.b	ENSGT01070000254181.a.b	ENSGT00990000203723.b.a.a	ENSGT00990000203723.b.a.b	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b.b	ENSGT00940000166122	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT01050000244868.c.b.b.b.a.a	ENSGT00940000156801.g #22	ENSGT01100000263513.a.a.b.a.b.a.l.a.a	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.a.a.a.a.b
Eastern happy	MODERN SPECIES	26																ENSACLG00000012179 #22	ENSACLG00000012212	ENSACLG00000012237	ENSACLG00000012355	ppcdc (ENSACLG00000012440)	ENSACLG00000012451	ENSACLG00000012605	pgap2 (ENSACLG00000012610)	ENSACLG00000012620	ppcdc (ENSACLG00000012628)	ENSACLG00000012638	ENSACLG00000012688	kin (ENSACLG00000012699)	ENSACLG00000012714	gmppb (ENSACLG00000012735)	ENSACLG00000012742
Zebra mbuna	MODERN SPECIES	1106	ENSMZEG00005019671	ENSMZEG00005019654	ENSMZEG00005019631	pip4p1b (ENSMZEG00005019603)	ENSMZEG00005019594	ENSMZEG00005019571	zgc:77880 (ENSMZEG00005019562)	ENSMZEG00005019550	stk26 (ENSMZEG00005019545)	ENSMZEG00005019542	dachb (ENSMZEG00005019531)	cnpy3 (ENSMZEG00005019521)	trpc5a (ENSMZEG00005019515)	ENSMZEG00005019506	ENSMZEG00005019503	ENSMZEG00005019498 #22	ENSMZEG00005019495	ENSMZEG00005019483	pgap2 (ENSMZEG00005019213)	ENSMZEG00005019210	ENSMZEG00005019208	ENSMZEG00005019206	ENSMZEG00005019193	grap2b (ENSMZEG00005019190)	fam83fb (ENSMZEG00005019183)	cyth4b (ENSMZEG00005019173)	ENSMZEG00005019163	ENSMZEG00005019161	ENSMZEG00005013168	ENSMZEG00005013115	ENSMZEG00005013111
P. nyererei	MODERN SPECIES	526								zgc:77880 (ENSPNYG00000000686)	stk26 (ENSPNYG00000000649)	FRMD7 (ENSPNYG00000000623)	dachb (ENSPNYG00000000576)	cnpy3 (ENSPNYG00000000558)	trpc5a (ENSPNYG00000000531)	ENSPNYG00000000524	ENSPNYG00000000497	ENSPNYG00000000467 #22
Lyretail cichlid	MODERN SPECIES	392	ENSNBRG00000020716	tkfc (ENSNBRG00000020770)	ENSNBRG00000020894	ENSNBRG00000020968	ENSNBRG00000020984	ENSNBRG00000020989	pip4p1b (ENSNBRG00000020997)	ENSNBRG00000021037	zgc:77880 (ENSNBRG00000021059)	ENSNBRG00000021085	FRMD7 (ENSNBRG00000021140)	dachb (ENSNBRG00000021174)	cnpy3 (ENSNBRG00000021212)	trpc5a (ENSNBRG00000021232)	ENSNBRG00000021272	ENSNBRG00000021285 #22	ENSNBRG00000021312	ENSNBRG00000021331
Nile tilapia	MODERN SPECIES	15	ENSONIG00000042002	ENSONIG00000036902	ENSONIG00000033894	pip4p1b (ENSONIG00000006276)	ENSONIG00000032418	ENSONIG00000038132	ENSONIG00000042328	ENSONIG00000039772	ENSONIG00000031333	zgc:77880 (ENSONIG00000006279)	stk26 (ENSONIG00000006281)	FRMD7 (ENSONIG00000006287)	dachb (ENSONIG00000006288)	cnpy3 (ENSONIG00000006296)	trpc5a (ENSONIG00000006300)	ENSONIG00000006317 #22	ENSONIG00000006320	ENSONIG00000017890	ENSONIG00000019247	ENSONIG00000036097	ENSONIG00000027989	ENSONIG00000036604	KIF1C (ENSONIG00000016882)	ENSONIG00000033802	ENSONIG00000034799	ENSONIG00000016886	ENSONIG00000032144	ENSONIG00000033597	ENSONIG00000037999	ENSONIG00000006901	ENSONIG00000009715
Midas cichlid	MODERN SPECIES	1244															ENSACIG00000009879	ENSACIG00000009852 #22	ENSACIG00000009833	ENSACIG00000009817
Pomacentridae	ANCESTRAL SPECIES	105	ENSGT00940000158972	ENSGT00940000157904.b	ENSGT00940000164842	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b	ENSGT00940000156187	ENSGT00800000124060.A.a	ENSGT00390000005739.a.a	ENSGT00390000015415	ENSGT00950000182924.A.a	ENSGT00940000165127.b	ENSGT00390000004237	ENSGT00940000165739	ENSGT00390000005498	ENSGT00940000158388	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00940000174503	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00950000183040.A.b.h	ENSGT00940000155128.a.b.a.a	ENSGT00940000177759	ENSGT00940000154986.a	ENSGT00390000013722 #27
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT00940000158972	ENSGT00940000157904.b	ENSGT00940000164842	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b	ENSGT00940000156187	ENSGT00800000124060.A.a	ENSGT00390000005739.a.a	ENSGT00390000015415	ENSGT00940000177217	ENSGT00940000165127.b	ENSGT00390000004237	ENSGT00940000165739	ENSGT00390000005498	ENSGT00940000158388	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00940000174503	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00950000183040.A.b.h	ENSGT00940000155128.a.b.a.a	ENSGT00940000177759	ENSGT00940000154986.a	ENSGT00390000013722 #27
Amphiprion	ANCESTRAL SPECIES	82	ENSGT01090000260774	ENSGT00390000003680.a.a.b	ENSGT00990000203723.b	ENSGT00940000156187	ENSGT00800000124060.A.a	ENSGT00390000005739.a.a	ENSGT00390000015415	ENSGT00950000182924.A.a	ENSGT00940000177217	ENSGT00940000165127.b	ENSGT00390000004237	ENSGT00940000165739	ENSGT00390000005498	ENSGT00940000158388	ENSGT00940000178361	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00940000174503	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000159922.a.b	ENSGT00950000183040.A.b.h	ENSGT00940000155128.a.b.a.a	ENSGT00940000154986.a	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000157587.l #20
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000012888	dysf (ENSAPEG00000012983)	cyp26b1 (ENSAPEG00000013138)	exoc6b (ENSAPEG00000013162)	exoc6b (ENSAPEG00000013214)	tkfc (ENSAPEG00000013257)	ENSAPEG00000013314	cmasa (ENSAPEG00000013348)	ovol1a (ENSAPEG00000013360)	mus81 (ENSAPEG00000013370)	tmem185 (ENSAPEG00000013424)	ENSAPEG00000013468	ENSAPEG00000013497	ENSAPEG00000013508	ENSAPEG00000013532	ENSAPEG00000013542 #22	ENSAPEG00000013557	ENSAPEG00000013622	DCLK2 (ENSAPEG00000013720)	TMEM184C (ENSAPEG00000013830)	ednrab (ENSAPEG00000013882)	ENSAPEG00000013916	slc10a7 (ENSAPEG00000013954) #35	ENSAPEG00000014039	ENSAPEG00000014067	ENSAPEG00000014093	FHDC1 (ENSAPEG00000014111)	ENSAPEG00000014125	anapc10 (ENSAPEG00000014148) #27	abce1 (ENSAPEG00000014179) #28	ENSAPEG00000014241 #20
Spiny chromis	MODERN SPECIES	1926																ENSAPOG00000006254 #22	ENSAPOG00000006269
Bicolor damselfish	MODERN SPECIES	808						exoc6b (ENSSPAG00000013509)	tkfc (ENSSPAG00000013622)	ENSSPAG00000013634	cmasa (ENSSPAG00000013656)	ovol1a (ENSSPAG00000013698)	mus81 (ENSSPAG00000013717)	tmem185 (ENSSPAG00000013783)	ENSSPAG00000013831	ENSSPAG00000013918	ENSSPAG00000013926	ENSSPAG00000013955 #22	FHIP1A (ENSSPAG00000013988)	ENSSPAG00000014153	DCLK2 (ENSSPAG00000014178)	TMEM184C (ENSSPAG00000014208)	ednrab (ENSSPAG00000014225)	ENSSPAG00000014250	slc10a7 (ENSSPAG00000014260) #35	ENSSPAG00000014294	ENSSPAG00000014304	ENSSPAG00000014330	ENSSPAG00000014352
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000180552	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000178504	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT01010000228954	ENSGT00940000154986.a
Tetraodontidae	ANCESTRAL SPECIES	35	ENSGT00940000165739	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27
Fugu	MODERN SPECIES	20	ENSTRUG00000032770	tkfc (ENSTRUG00000001702)	exoc6b (ENSTRUG00000012277)	cyp26b1 (ENSTRUG00000012613)	ENSTRUG00000022157	ENSTRUG00000025453	pip4p1b (ENSTRUG00000027820)	ENSTRUG00000029629	zgc:77880 (ENSTRUG00000027264)	ENSTRUG00000006511	ENSTRUG00000006433	dachb (ENSTRUG00000027020)	cnpy3 (ENSTRUG00000025774)	trpc5a (ENSTRUG00000013453)	ENSTRUG00000028376	ENSTRUG00000017450 #22	ENSTRUG00000017457	ENSTRUG00000017465	ENSTRUG00000017467	TMEM184C (ENSTRUG00000017477)	ednrab (ENSTRUG00000017482)	slc10a7 (ENSTRUG00000017490) #35	REELD1 (ENSTRUG00000022355)	ENSTRUG00000028270 #33	ENSTRUG00000017497	abce1 (ENSTRUG00000017503) #28	anapc10 (ENSTRUG00000017519) #27	ENSTRUG00000017522	pcxb (ENSTRUG00000021779)	ENSTRUG00000015601	ENSTRUG00000032884
Tetraodon	MODERN SPECIES	26	ovol1a (ENSTNIG00000005499)	ENSTNIG00000005498	ENSTNIG00000005497	tkfc (ENSTNIG00000005496)	exoc6b (ENSTNIG00000005495)	cyp26b1 (ENSTNIG00000011235)	dysf (ENSTNIG00000011236)	pip4p1b (ENSTNIG00000011237)	ENSTNIG00000011238	zgc:77880 (ENSTNIG00000011239)	stk26 (ENSTNIG00000011240)	FRMD7 (ENSTNIG00000011241)	ENSTNIG00000011242	cnpy3 (ENSTNIG00000011243)	trpc5a (ENSTNIG00000011244)	ENSTNIG00000011245 #22	ENSTNIG00000011246	ENSTNIG00000011247	ENSTNIG00000011248	ENSTNIG00000011249	TMEM184C (ENSTNIG00000011250)	ednrab (ENSTNIG00000011251)	slc10a7 (ENSTNIG00000011252) #35	ENSTNIG00000003530	ENSTNIG00000003531	bace2 (ENSTNIG00000003532)	DSCAM (ENSTNIG00000004972)	ENSTNIG00000004971	sh3bgr (ENSTNIG00000004970)	get1 (ENSTNIG00000004969)	ENSTNIG00000004968
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT01030000234775	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT01010000228954
Ballan wrasse	MODERN SPECIES	965																ENSLBEG00000019783 #22	ENSLBEG00000019818
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b.e	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT01030000234775	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT01010000228954
Perciformes	ANCESTRAL SPECIES	19	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b.e	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT01050000244843.c.a.b.a.a.b.b	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000178504	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT01010000228954
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00940000156187	ENSGT00800000124060.A.a	ENSGT00390000005739.a.a	ENSGT00390000015415	ENSGT00940000177217	ENSGT00940000165127.b	ENSGT00390000004237	ENSGT00940000165739	ENSGT00390000005498	ENSGT00940000158388	ENSGT00940000163711.b.e.b.b	ENSGT01080000257449	ENSGT00940000157094	ENSGT00940000153991.a.a	ENSGT00940000162034	ENSGT00940000156801.g #22
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	365																ENSGACG00000000190 #22
Stickleback	MODERN SPECIES	7	dysf (ENSGACG00000018813)	cyp26b1 (ENSGACG00000018809)	exoc6b (ENSGACG00000018808)	tkfc (ENSGACG00000018805)	ENSGACG00000018802	cmasa (ENSGACG00000018796)	ovol1a (ENSGACG00000018794)	mus81 (ENSGACG00000018793)	tmem185 (ENSGACG00000018788)	ENSGACG00000018786	ENSGACG00000018784	ENSGACG00000018782	ankrd46b (ENSGACG00000018781)	ENSGACG00000018779	ENSGACG00000018775	ENSGACG00000018772 #22	ENSGACG00000018767	ENSGACG00000018764	ENSGACG00000018761	ENSGACG00000018759	CLCN5 (ENSGACG00000018753)	ENSGACG00000018751	bmp15 (ENSGACG00000018750)	leap2 (ENSGACG00000018749)	ENSGACG00000018743	hdac8 (ENSGACG00000018737)	rps4x (ENSGACG00000018720)	ENSGACG00000018715	rasl11a (ENSGACG00000018711)	gc2 (ENSGACG00000018704)	ENSGACG00000018703
Lumpfish	MODERN SPECIES	9	cyp26b1 (ENSCLMG00005018836)	exoc6b (ENSCLMG00005018853)	tkfc (ENSCLMG00005019134)	ENSCLMG00005019368	ENSCLMG00005019370	cmasa (ENSCLMG00005019371)	ovol1a (ENSCLMG00005019372)	mus81 (ENSCLMG00005019373)	tmem185 (ENSCLMG00005019379)	ENSCLMG00005019381	ENSCLMG00005019382	ankrd46b (ENSCLMG00005019383)	ENSCLMG00005019385	ENSCLMG00005019386	col4a5 (ENSCLMG00005019389)	ENSCLMG00005019397 #22	vbp1 (ENSCLMG00005019401)	RAB39B (ENSCLMG00005019402)	zgc:162171 (ENSCLMG00005004466)	ENSCLMG00005004519	ENSCLMG00005004706	ENSCLMG00005004781	ENSCLMG00005004910	zgc:109889 (ENSCLMG00005004913)	htr2cl1 (ENSCLMG00005004919)	ENSCLMG00005004949	ENSCLMG00005004956	ccnb3 (ENSCLMG00005004958)	tnfsf10l (ENSCLMG00005004961)	CLCN5 (ENSCLMG00005004992)	ENSCLMG00005009439
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b.e	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT01050000244843.c.a.b.a.a.b.b	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000178504	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT01010000228954	ENSGT00940000154986.a	ENSGT00940000155128.a.b.a.a
Channel bull blenny	MODERN SPECIES	9	ENSCGOG00000020817	ENSCGOG00000020829	cmasa (ENSCGOG00000020833)	ENSCGOG00000020836	ENSCGOG00000020839	tkfc (ENSCGOG00000020850)	ENSCGOG00000020915	cyp26b1 (ENSCGOG00000020928)	dysf (ENSCGOG00000020975)	zgc:77880 (ENSCGOG00000011738)	stk26 (ENSCGOG00000011746)	ENSCGOG00000011936	ENSCGOG00000011939	ENSCGOG00000011942	ENSCGOG00000011943	ENSCGOG00000011963 #22	ENSCGOG00000011967	ENSCGOG00000011969	ENSCGOG00000011978	ENSCGOG00000011983	ENSCGOG00000011986	ENSCGOG00000011989	ENSCGOG00000011992	ENSCGOG00000011995	ENSCGOG00000012060	CORO2A (ENSCGOG00000012069)	tec (ENSCGOG00000012229)	ENSCGOG00000012528	ENSCGOG00000012701	abcg2a (ENSCGOG00000012752)	ENSCGOG00000014143 #20
Pike perch	MODERN SPECIES	19	cyp26b1 (ENSSLUG00000000845)	ENSSLUG00000000848	ENSSLUG00000000852	dysf (ENSSLUG00000000924)	ENSSLUG00000001086	pip4p1b (ENSSLUG00000001111)	ENSSLUG00000001117	zgc:77880 (ENSSLUG00000001124)	ENSSLUG00000001176	FRMD7 (ENSSLUG00000001283)	dachb (ENSSLUG00000001287)	ENSSLUG00000001288	ENSSLUG00000001290	cnpy3 (ENSSLUG00000001292)	trpc5a (ENSSLUG00000001298)	ENSSLUG00000001310 #22	rasl11a (ENSSLUG00000001312)	ENSSLUG00000001337	arhgap36 (ENSSLUG00000001419)	ENSSLUG00000001421	rps4x (ENSSLUG00000001429)	hdac8 (ENSSLUG00000001495)	PHKA1 (ENSSLUG00000001944)	leap2 (ENSSLUG00000002457)	bmp15 (ENSSLUG00000002460)	ENSSLUG00000002470	CLCN5 (ENSSLUG00000002720)	tnfsf10l (ENSSLUG00000008785)	ccnb3 (ENSSLUG00000008796)	ENSSLUG00000008814	htr2cl1 (ENSSLUG00000008836)
Eupecaria_C	ANCESTRAL SPECIES	47	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00940000177217	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b.f	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b	ENSGT01030000234592.A.a.b.j	ENSGT01050000244866.D.a.d	ENSGT01030000234592.A.a.b.i.a	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT00940000156633.d.b	ENSGT00940000163999.b.a.b	ENSGT00390000004396.h	ENSGT00940000156171.h #17	ENSGT00940000157587.l #20
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	60	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b.e	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT01030000234775	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00940000174503	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27
European seabass	MODERN SPECIES	4	dysf (ENSDLAG00005010041)	ENSDLAG00005018193	ENSDLAG00005030710	ENSDLAG00005009893	ENSDLAG00005031645	ENSDLAG00005032803	ENSDLAG00005033648	ENSDLAG00005029432	ENSDLAG00005009858	ENSDLAG00005009792	ENSDLAG00005033257	ENSDLAG00005027953	dachb (ENSDLAG00005030056)	cnpy3 (ENSDLAG00005031528)	trpc5a (ENSDLAG00005008433)	ENSDLAG00005008388 #22	ENSDLAG00005031043	ENSDLAG00005008326	ENSDLAG00005032583	ENSDLAG00005033172	ENSDLAG00005031518	ENSDLAG00005034456	ENSDLAG00005007947	TMEM184C (ENSDLAG00005007906)	ENSDLAG00005007896	TTC29 (ENSDLAG00005007891)	ENSDLAG00005002938	ENSDLAG00005028938	ENSDLAG00005032369	ENSDLAG00005011541	ENSDLAG00005029661
Large yellow croaker	MODERN SPECIES	485	pfdn2 (ENSLCRG00005014176)	nit1 (ENSLCRG00005014172)	CLCN3 (ENSLCRG00005013766)	ENSLCRG00005013755	cyp26b1 (ENSLCRG00005013753)	dysf (ENSLCRG00005013209)	ENSLCRG00005013200	ENSLCRG00005013199	pip4p1b (ENSLCRG00005013197)	zgc:77880 (ENSLCRG00005013196)	stk26 (ENSLCRG00005013174)	ENSLCRG00005013167	dachb (ENSLCRG00005013165)	cnpy3 (ENSLCRG00005013164)	trpc5a (ENSLCRG00005010892)	ENSLCRG00005010872 #22	ENSLCRG00005010871	ENSLCRG00005010870	CLCN5 (ENSLCRG00005010769)	tnfsf10l (ENSLCRG00005010759)	ccnb3 (ENSLCRG00005010754)	ENSLCRG00005010748	ENSLCRG00005010747	htr2cl1 (ENSLCRG00005010745)	zgc:109889 (ENSLCRG00005010742)	ENSLCRG00005010741	ENSLCRG00005008762	zgc:92429 (ENSLCRG00005008732)	ENSLCRG00005008709	zgc:162171 (ENSLCRG00005008702)	RAB39B (ENSLCRG00005008701)
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010001934	ENSSAUG00010001931	ENSSAUG00010001926	ENSSAUG00010001918	ENSSAUG00010001905	ENSSAUG00010001875	ENSSAUG00010001858	pip4p1b (ENSSAUG00010001850)	zgc:77880 (ENSSAUG00010001844)	stk26 (ENSSAUG00010001589)	ENSSAUG00010001550	dachb (ENSSAUG00010001536)	ENSSAUG00010001496	cnpy3 (ENSSAUG00010001480)	trpc5a (ENSSAUG00010001461)	ENSSAUG00010001432 #22	ENSSAUG00010001428	ENSSAUG00010001425	ENSSAUG00010001420	ENSSAUG00010001402	ENSSAUG00010001395	ENSSAUG00010001389	ENSSAUG00010001374	ENSSAUG00010001360	ENSSAUG00010001345	ENSSAUG00010001338	ENSSAUG00010001328	ENSSAUG00010001315	ENSSAUG00010001305	ENSSAUG00010007549	zgc:113176 (ENSSAUG00010007542)
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00940000177217	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT01100000263582	ENSGT00940000162818.c.a.g.b	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000180552	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000178504	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27
Carangaria	ANCESTRAL SPECIES	20	ENSGT00940000177217	ENSGT01070000253890	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000178504	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00940000178415	ENSGT00390000015089 #28	ENSGT00390000013722 #27
Pleuronectoidei	ANCESTRAL SPECIES	58	ENSGT00390000004237	ENSGT00940000165127.b	ENSGT00940000177217	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT01030000234775	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT00940000154895.a.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00940000178415
Turbot	MODERN SPECIES	11	ENSSMAG00000001245	ENSSMAG00000030318	exoc6b (ENSSMAG00000001157)	ENSSMAG00000024691	dysf (ENSSMAG00000000993)	ENSSMAG00000036382	ENSSMAG00000023688	ENSSMAG00000000974	ENSSMAG00000000947	ENSSMAG00000000915	ENSSMAG00000000872	dachb (ENSSMAG00000037032)	cnpy3 (ENSSMAG00000031586)	trpc5a (ENSSMAG00000000764)	ENSSMAG00000037107	ENSSMAG00000015692 #22	ENSSMAG00000015720	ENSSMAG00000035385	REELD1 (ENSSMAG00000015757)	SLC10A7 (ENSSMAG00000015779) #35	ENSSMAG00000015840	EDNRA (ENSSMAG00000015856)	TMEM184C (ENSSMAG00000015871)	ENSSMAG00000015892	ENSSMAG00000015923	abce1 (ENSSMAG00000015973) #28	anapc10 (ENSSMAG00000016035) #27	ENSSMAG00000016090	ENSSMAG00000016063	ENSSMAG00000016099	ENSSMAG00000016132
Carangaria_A	ANCESTRAL SPECIES	60	ENSGT00940000165127.b	ENSGT01070000253890	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT01090000259997.a.d.b.b.b.b.b	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000178504	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27
Seriola	ANCESTRAL SPECIES	24	ENSGT00940000165127.b	ENSGT01070000253890	ENSGT00950000182924.A.a	ENSGT00390000015415	ENSGT00390000005739.a.a	ENSGT00800000124060.A.a	ENSGT00940000156187	ENSGT00990000203723.b	ENSGT00390000003680.a.a.b	ENSGT00940000164842	ENSGT00940000157904.b	ENSGT00940000158972	ENSGT00390000001134.b.`b.b	ENSGT00390000014072.A	ENSGT01060000248594.e.a.n	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT01090000259997.a.d.b.b.b.b.b	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a.g	ENSGT01100000263529.a.a.a.a.b.c.a.h	ENSGT01050000244843.c.a.b.a.a.b.a.a.s	ENSGT00940000154737.d	ENSGT00950000182907.a.b.a	ENSGT00940000155598.b	ENSGT00940000155951.b	ENSGT00940000155951.a	ENSGT00940000166707	ENSGT00940000166038	ENSGT00940000156633.d.b
Greater amberjack	MODERN SPECIES	124	ENSSDUG00000009944	ENSSDUG00000009958	tkfc (ENSSDUG00000009991)	exoc6b (ENSSDUG00000010037)	cyp26b1 (ENSSDUG00000010139)	dysf (ENSSDUG00000010186)	ENSSDUG00000010296	pip4p1b (ENSSDUG00000010391)	zgc:77880 (ENSSDUG00000010423)	stk26 (ENSSDUG00000010465)	ENSSDUG00000010515	ENSSDUG00000010524	dachb (ENSSDUG00000010555)	cnpy3 (ENSSDUG00000010598)	trpc5a (ENSSDUG00000010612)	ENSSDUG00000010648 #22	ENSSDUG00000010674	ENSSDUG00000010704	ENSSDUG00000010721	DCLK2 (ENSSDUG00000010741)	ENSSDUG00000010827	ENSSDUG00000010868	ENSSDUG00000010878	ENSSDUG00000010891	ENSSDUG00000010928	CORO2A (ENSSDUG00000010949)	tec (ENSSDUG00000010983)	ENSSDUG00000011050	ENSSDUG00000011061	ENSSDUG00000011081	abcg2a (ENSSDUG00000011124)
Yellowtail amberjack	MODERN SPECIES	2873																ENSSLDG00000009131 #22
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	1444																ENSLCAG00010024267 #22
Barramundi perch	MODERN SPECIES	626												pip4p1b (ENSLCAG00010004274)	ENSLCAG00010004278	ENSLCAG00010004289	ENSLCAG00010004292	ENSLCAG00010004302 #22	ENSLCAG00010004307
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000180552	ENSGT00940000155694.h	ENSGT01090000259997.a.d.b.b.b.b.b	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27
Zig-zag eel	MODERN SPECIES	9	ETNPPL (ENSMAMG00000005807)	ENSMAMG00000005835	ENSMAMG00000005846	ENSMAMG00000028671	ENSMAMG00000005928	ENSMAMG00000005941	ENSMAMG00000005956	ENSMAMG00000006090	ENSMAMG00000006114	ENSMAMG00000006171	ENSMAMG00000006211	ENSMAMG00000006298	ENSMAMG00000006346	ENSMAMG00000006360	ENSMAMG00000006416	ENSMAMG00000006442 #22	ENSMAMG00000026757	ENSMAMG00000006455	ENSMAMG00000006467	ENSMAMG00000006519	ENSMAMG00000026346	ENSMAMG00000028583	ENSMAMG00000006533	ENSMAMG00000006546	ENSMAMG00000028520	ENSMAMG00000006596	ENSMAMG00000006638	ENSMAMG00000028054	ENSMAMG00000024894	ENSMAMG00000006683	ENSMAMG00000027543
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00940000154949.b	ENSGT01100000263573.a.a.b	ENSGT00940000156243	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000005970	ENSGT00940000158215	ENSGT00390000008250	ENSGT00550000074944	ENSGT00940000158006	ENSGT00950000182916.a.b.a.b	ENSGT00390000008787.a	ENSGT00940000156306	ENSGT00530000063652.a.a	ENSGT00390000013693	ENSGT00390000013762.a.f	ENSGT00940000156801.g #22	ENSGT00950000182936.a.a.b.b	ENSGT00940000155694.h	ENSGT01090000259997.a.d.b.b.b.b.b	ENSGT00940000154895.a.a	ENSGT01100000263529.a.a.a.a.b.c.a	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00390000011932 #35	ENSGT00940000163277	ENSGT00940000156063.l #33	ENSGT00940000159922.a.b	ENSGT00390000015089 #28	ENSGT00390000013722 #27	ENSGT00940000154986.a
Climbing perch	MODERN SPECIES	9	COL25A1 (ENSATEG00000029427)	ENSATEG00000027750	ENSATEG00000016238	ENSATEG00000016224	ENSATEG00000016165	ENSATEG00000027846	ENSATEG00000016091	ENSATEG00000016059	ENSATEG00000016008	ENSATEG00000015967	ENSATEG00000015928	BANK1 (ENSATEG00000015898)	ENSATEG00000015858	DDIT4L (ENSATEG00000015843)	ENSATEG00000015737	ENSATEG00000015722 #22	ENSATEG00000015684	ENSATEG00000015674	ENSATEG00000015633	ENSATEG00000026561	ENSATEG00000020909	ENSATEG00000025690	ENSATEG00000026948	ENSATEG00000029726	ENSATEG00000029339	ENSATEG00000020868	ENSATEG00000020793	ENSATEG00000020742	ENSATEG00000020723	ENSATEG00000020720	ENSATEG00000020713
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000019121	ENSBSLG00000019149	plin2 (ENSBSLG00000019174)	ENSBSLG00000019184	ENSBSLG00000019203	ENSBSLG00000019326	plaa (ENSBSLG00000019346)	zdhhc21 (ENSBSLG00000000111)	NFIB (ENSBSLG00000000183)	ENSBSLG00000000263	PPP3CA (ENSBSLG00000000319)	DDIT4L (ENSBSLG00000000405)	ENSBSLG00000000422	ENSBSLG00000000443	ENSBSLG00000000447	ENSBSLG00000000455 #22	ENSBSLG00000000600	ENSBSLG00000000532	ENSBSLG00000000610	ENSBSLG00000000618	ENSBSLG00000000625 #22	ENSBSLG00000000638	ENSBSLG00000000646	ENSBSLG00000000663	ENSBSLG00000000699	ENSBSLG00000000744	ENSBSLG00000000745	ENSBSLG00000000748	DCLK2 (ENSBSLG00000000749)	ENSBSLG00000000756	ENSBSLG00000000763
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000019326	plaa (ENSBSLG00000019346)	zdhhc21 (ENSBSLG00000000111)	NFIB (ENSBSLG00000000183)	ENSBSLG00000000263	PPP3CA (ENSBSLG00000000319)	DDIT4L (ENSBSLG00000000405)	ENSBSLG00000000422	ENSBSLG00000000443	ENSBSLG00000000447	ENSBSLG00000000455 #22	ENSBSLG00000000600	ENSBSLG00000000532	ENSBSLG00000000610	ENSBSLG00000000618	ENSBSLG00000000625 #22	ENSBSLG00000000638	ENSBSLG00000000646	ENSBSLG00000000663	ENSBSLG00000000699	ENSBSLG00000000744	ENSBSLG00000000745	ENSBSLG00000000748	DCLK2 (ENSBSLG00000000749)	ENSBSLG00000000756	ENSBSLG00000000763	ENSBSLG00000000764	ENSBSLG00000000768	TMEM184C (ENSBSLG00000000778)	ednrab (ENSBSLG00000000783)	ENSBSLG00000000790
Tiger tail seahorse	MODERN SPECIES	93	PAIP2B (ENSHCOG00000001492)	hspa12b (ENSHCOG00000001483)	cct7 (ENSHCOG00000001467)	ENSHCOG00000001455	DDIT4L (ENSHCOG00000001451)	ENSHCOG00000001442	ENSHCOG00000000051	ENSHCOG00000001429	rcor2 (ENSHCOG00000001411)	plaa (ENSHCOG00000001388)	ENSHCOG00000001382	DENND4C (ENSHCOG00000001357)	dachb (ENSHCOG00000001327)	cnpy3 (ENSHCOG00000001319)	trpc5a (ENSHCOG00000001309)	ENSHCOG00000001301 #22	ENSHCOG00000001295	ARSJ (ENSHCOG00000001264)	ENSHCOG00000001260
Pinecone sodierfish	MODERN SPECIES	9	ENSMMDG00005001758	ENSMMDG00005001752	ENSMMDG00005001748	ENSMMDG00005001746	cyp17a2 (ENSMMDG00005001721)	ENSMMDG00005001713	ENSMMDG00005001705	ENSMMDG00005001696	ENSMMDG00005001692	ENSMMDG00005001686	ENSMMDG00005001682	ENSMMDG00005001651	ENSMMDG00005001641	ENSMMDG00005001638	ENSMMDG00005001631	ENSMMDG00005001618 #22	ENSMMDG00005001610	ENSMMDG00005001606	ENSMMDG00005001601	ENSMMDG00005001593	ENSMMDG00005001588	ENSMMDG00005001582	wdr55 (ENSMMDG00005001576)	THAP1 (ENSMMDG00005001571)	ENSMMDG00005001565	ENSMMDG00005001553	ENSMMDG00005001497	ENSMMDG00005001485	ENSMMDG00005001476	ENSMMDG00005001464	ENSMMDG00005019703
Actinopterygii	ANCESTRAL SPECIES	15	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00390000004396.h	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587.k #20	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b	ENSGT00940000155201
Neopterygii	ANCESTRAL SPECIES	2	ENSGT00940000163989.a.a	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00390000004396.h	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587.k #20	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000159922.a.b	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Osteoglossocephalai	ANCESTRAL SPECIES	14	ENSGT00940000163989.a.a	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #17	ENSGT00390000017043 #18	ENSGT00940000178396	ENSGT00940000165852	ENSGT00940000157587.k #20	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00390000013722 #27	ENSGT00390000015089 #28	ENSGT00940000178415	ENSGT00940000159922.a.b	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000156063.l #33	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339 #37
Clupeocephala	ANCESTRAL SPECIES	26	ENSGT00940000163989.a.b	ENSGT00940000163989.a.a	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.g #17	ENSGT00390000017043 #18	ENSGT00940000178396	ENSGT00940000157587.k #20	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00390000015089 #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000160339 #37	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000168784	ENSGT00940000159559
Otomorpha	ANCESTRAL SPECIES	90	ENSGT00940000156633.d.a	ENSGT00940000163989.a.b	ENSGT00940000165755	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.g #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587.k #20	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000156733 #23	ENSGT00940000162501 #24	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00390000015089 #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000167497	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000160339 #37	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559
Clupeiformes	ANCESTRAL SPECIES	26	ENSGT00940000157278.s	ENSGT00940000166529	ENSGT00940000157056.a	ENSGT00940000156741	ENSGT00940000157115	ENSGT00940000154216.b	ENSGT00950000182856.a.a.b.f	ENSGT00390000010356	ENSGT00940000154622.a.a	ENSGT00940000160388	ENSGT00940000154508.a.a.s.a	ENSGT00390000003901	ENSGT00940000153232.a.b.a	ENSGT00940000153232.b	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000156733 #23	ENSGT00940000157587.k #20	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00940000163989.a.b	ENSGT00940000156633.d.a	ENSGT00940000166376
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	14	SNX25 (ENSDCDG00000002681)	ENSDCDG00000002673	ENSDCDG00000002670	pdlim3a (ENSDCDG00000002668)	ufsp2 (ENSDCDG00000002666)	ankrd37 (ENSDCDG00000002663)	SNX25 (ENSDCDG00000002557)	cfap97 (ENSDCDG00000002520)	slc25a4 (ENSDCDG00000002515)	helt (ENSDCDG00000002507)	acsl1a (ENSDCDG00000001101)	primpol (ENSDCDG00000000824)	casp3a (ENSDCDG00000000818)	ENSDCDG00000000812	USP38 (ENSDCDG00000000799) #21	gab1 (ENSDCDG00000000791) #22	SMARCA5 (ENSDCDG00000000723) #23	INPP4B (ENSDCDG00000000572) #20	znf330 (ENSDCDG00000000508) #18	rnf150a (ENSDCDG00000000480) #17	TBC1D9 (ENSDCDG00000000380) #15	ucp1 (ENSDCDG00000000180) #14	elmod2 (ENSDCDG00000032395) #13	ENSDCDG00000032393	FAM13A (ENSDCDG00000032130)	herc3 (ENSDCDG00000032074)	herc56.4 (ENSDCDG00000032058)	ENSDCDG00000032055	abcg2d (ENSDCDG00000030479)	pkd2 (ENSDCDG00000030259)	vps37a (ENSDCDG00000030232)
Denticle herring	MODERN SPECIES	70																gab1 (ENSDCDG00000007154) #22	SMARCA5 (ENSDCDG00000007010) #23
Atlantic herring	MODERN SPECIES	14	ufsp2 (ENSCHAG00000019131)	ankrd37 (ENSCHAG00000019288)	SNX25 (ENSCHAG00000019303)	noxo1b (ENSCHAG00000019677)	ENSCHAG00000019710	slc25a4 (ENSCHAG00000019712)	ENSCHAG00000019737	helt (ENSCHAG00000019761)	acsl1a (ENSCHAG00000019812)	primpol (ENSCHAG00000020482)	casp3a (ENSCHAG00000020507)	ENSCHAG00000020529	ENSCHAG00000000549	ENSCHAG00000000680	USP38 (ENSCHAG00000001199) #21	gab1 (ENSCHAG00000002169) #22	SMARCA5 (ENSCHAG00000002317) #23	ENSCHAG00000003447	ENSCHAG00000003491	INPP4B (ENSCHAG00000003608) #20	znf330 (ENSCHAG00000004326) #18	rnf150a (ENSCHAG00000004379) #17	ENSCHAG00000004454	TBC1D9 (ENSCHAG00000004522) #15	ucp1 (ENSCHAG00000005163) #14	elmod2 (ENSCHAG00000005182) #13	ENSCHAG00000005206	zgc:154142 (ENSCHAG00000005227)	FAM13A (ENSCHAG00000005450)	herc3 (ENSCHAG00000007052)	ENSCHAG00000007343
Otophysi	ANCESTRAL SPECIES	79	ENSGT00940000163989.a.b	ENSGT00940000165755.b	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.g #17	ENSGT00390000017043 #18	ENSGT00390000016264 #19	ENSGT00940000157587.k #20	ENSGT00940000156733 #23	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000162501 #24	ENSGT00940000181639	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00390000015089.db #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000167497	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000160339 #37	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559
Characiphysae	ANCESTRAL SPECIES	9	ENSGT00940000163989.a.b	ENSGT00940000165755.b	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.g #17	ENSGT00390000017043 #18	ENSGT00940000178396	ENSGT00940000157587.k #20	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00390000011517.a.a.c.a.a.a	ENSGT00940000162501 #24	ENSGT00940000181639	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00390000015089.db #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000167497	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000160339 #37	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333
Channel catfish	MODERN SPECIES	22	HERC3 (ENSIPUG00000007471)	FAM13A (ENSIPUG00000007390)	ENSIPUG00000006032	zgc:154142 (ENSIPUG00000005900)	ENSIPUG00000005886	elmod2 (ENSIPUG00000005864) #13	ucp1 (ENSIPUG00000005843) #14	TBC1D9 (ENSIPUG00000005781) #15	Rnf150 (ENSIPUG00000005739) #17	Znf330 (ENSIPUG00000005653) #18	ENSIPUG00000005636	inpp4b (ENSIPUG00000005415) #20	SMARCA5 (ENSIPUG00000005229)	ENSIPUG00000005208	USP38 (ENSIPUG00000005133) #21	gab1 (ENSIPUG00000005006) #22	ENSIPUG00000004977	ENSIPUG00000004960	ENSIPUG00000004940	ENSIPUG00000004921	frem3 (ENSIPUG00000004849) #24	hhip (ENSIPUG00000004822) #26	ENSIPUG00000004809	ABCE1-2 (ENSIPUG00000004734) #28	smad1 (ENSIPUG00000004686) #30	MMAA (ENSIPUG00000004655) #31	zgc:152968 (ENSIPUG00000004633)	znf827 (ENSIPUG00000004564) #33	ENSIPUG00000004547	ENSIPUG00000004523	lsm6 (ENSIPUG00000004508) #34
Characiphysae_b	ANCESTRAL SPECIES	76	ENSGT00940000165755.a	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.g #17	ENSGT00390000017043 #18	ENSGT00940000178396	ENSGT00940000157587.k #20	ENSGT00940000156733 #23	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00390000011517.a.a.c.a.a.a	ENSGT00940000162501 #24	ENSGT00940000181639	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00390000015089.db #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000167497	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000160339 #37	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333
Characoidei	ANCESTRAL SPECIES	83	ENSGT00940000165755.a	ENSGT00940000158189	ENSGT00950000183033.a.b.a	ENSGT01030000234528.A.a.a	ENSGT00570000079168.b.b.b	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171.g #17	ENSGT00390000017043 #18	ENSGT00940000178396	ENSGT00940000157587.k #20	ENSGT00940000156733 #23	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00390000011517.a.a.c.a.a.a	ENSGT00940000162501 #24	ENSGT00940000181639	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00390000015089.db #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000167497	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000160339 #37	ENSGT00940000158472	ENSGT00940000159559.e	ENSGT00940000159333
Red-bellied piranha	MODERN SPECIES	304								TBC1D9 (ENSPNAG00000006620) #15	rnf150a (ENSPNAG00000004327) #17	znf330 (ENSPNAG00000007024) #18	ENSPNAG00000028197	ENSPNAG00000006921	INPP4B (ENSPNAG00000004309) #20	SMARCA5 (ENSPNAG00000027824) #23	USP38 (ENSPNAG00000027641) #21	gab1 (ENSPNAG00000027574) #22	ENSPNAG00000004231
Mexicana tetra	MODERN SPECIES	17	FAM13A (ENSAMXG00000005547)	zgc:154142 (ENSAMXG00000005561)	ENSAMXG00000025930	elmod2 (ENSAMXG00000005577) #13	ucp1 (ENSAMXG00000005590) #14	ENSAMXG00000040109	ENSAMXG00000031819 #15	ENSAMXG00000005620 #15	rnf150a (ENSAMXG00000005659) #17	znf330 (ENSAMXG00000037400) #18	ENSAMXG00000040943	INPP4B (ENSAMXG00000005675) #20	ENSAMXG00000038896	smarca5 (ENSAMXG00000005709)	USP38 (ENSAMXG00000005773) #21	gab1 (ENSAMXG00000005791) #22	ENSAMXG00000031973	ENSAMXG00000005803	frem3 (ENSAMXG00000005822) #24	hhip (ENSAMXG00000032857) #26	ENSAMXG00000036070	ABCE1 (ENSAMXG00000041181) #28	smad1 (ENSAMXG00000016040) #30	mmaa (ENSAMXG00000043168) #31	zgc:152968 (ENSAMXG00000019691)	ZNF827 (ENSAMXG00000019655) #33	lsm6 (ENSAMXG00000038738) #34	pou4f2 (ENSAMXG00000032001) #37	prmt9 (ENSAMXG00000019547)	arhgap10 (ENSAMXG00000040905)	nr3c2 (ENSAMXG00000025608)
Electric eel	MODERN SPECIES	792														smarca5 (ENSEEEG00000004502)	USP38 (ENSEEEG00000005893) #21	gab1 (ENSEEEG00000005905) #22	ENSEEEG00000005906
Cyprinoidei	ANCESTRAL SPECIES	22	ENSGT00940000163614	ENSGT00940000165278	ENSGT00940000163648.a.b	ENSGT00950000183034.A.g	ENSGT00940000156365	ENSGT00940000153665.b.a.a	ENSGT00940000154490.a.b	ENSGT00940000156459	ENSGT00690000101915.i.b	ENSGT00940000161074.b	ENSGT00950000183159.b.c.a	ENSGT00940000156711.k.b	ENSGT00390000015293	ENSGT00940000163575	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000162501 #24	ENSGT00940000181639	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000167497	ENSGT00940000156063.k #33	ENSGT00940000154978 #34	ENSGT00940000160339 #37	ENSGT01100000263512.a.a.b.b	ENSGT00940000155201.c	ENSGT00940000158472	ENSGT00940000159559	ENSGT00940000159333
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	164	ENSGT00940000156365.c	ENSGT00940000153665.b.a.a.d	ENSGT00940000154490.a.b.c	ENSGT00940000156459.m	ENSGT00690000101915.i.b.a	ENSGT00940000161074.b.g	ENSGT00950000183159.b.c.a	ENSGT00940000158108.h.a	ENSGT00390000015293.g	ENSGT00960000188499	ENSGT00390000016051.a.a	ENSGT00390000006051.u	ENSGT00940000164706.a.b	ENSGT01030000235355	ENSGT00940000158403.f #21	ENSGT00940000156801.h.c #22	ENSGT00940000162501.f #24	ENSGT00940000158660.c #26	ENSGT00930000150973.B.f	ENSGT00940000154391.a.a.b #30	ENSGT00390000009908.f #31	ENSGT00940000167497	ENSGT00940000156063.k.f #33	ENSGT00940000154978.db #34	ENSGT00940000160339.a #37	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000155201.c.b	ENSGT00940000158472.c	ENSGT00940000159559.c	ENSGT00940000159333.m	ENSGT00940000154895.b.d.a
Goldfish	MODERN SPECIES	18	arl6 (ENSCARG00000014003)	SLC5A7 (ENSCARG00000013990)	kctd12.2 (ENSCARG00000023274)	lmo7b (ENSCARG00000023205)	ENSCARG00000023268	klf12a (ENSCARG00000023176)	pibf1 (ENSCARG00000023114)	ENSCARG00000023089	gtf2f2a (ENSCARG00000023034)	tpt1 (ENSCARG00000023006)	ENSCARG00000022994	ENSCARG00000022988	ENSCARG00000022978	ENSCARG00000022976	USP38 (ENSCARG00000022939) #21	gab1 (ENSCARG00000022869) #22	frem3 (ENSCARG00000022812) #24	hhip (ENSCARG00000022169) #26	ENSCARG00000022129	smad1 (ENSCARG00000022107) #30	mmaa (ENSCARG00000022095) #31	zgc:152968 (ENSCARG00000022034)	ZNF827 (ENSCARG00000022014) #33	lrata (ENSCARG00000022009)	map9 (ENSCARG00000021999)	gucy1a1 (ENSCARG00000021972)	gucy1b1 (ENSCARG00000021964)	fabp2 (ENSCARG00000021956)	USP53 (ENSCARG00000021907)	myoz2b (ENSCARG00000021887)	ENSCARG00000021835
Cyprininae_a	ANCESTRAL SPECIES	157	ENSGT00940000156365.c	ENSGT00940000153665.b.a.a.d	ENSGT00940000154490.a.b.c	ENSGT00940000156459.m	ENSGT00690000101915.i.b.a	ENSGT00940000161074.b.g	ENSGT00950000183159.b.c.a	ENSGT00940000158108.h.a	ENSGT00390000015293.g	ENSGT00960000188499	ENSGT00390000016051.a.a	ENSGT00390000006051.u	ENSGT00940000164706.a.b	ENSGT01030000235355.g	ENSGT00940000158403.f #21	ENSGT00940000156801.h.c #22	ENSGT00940000162501.f #24	ENSGT00940000158660.c #26	ENSGT00930000150973.B.f	ENSGT00940000154391.a.a.b #30	ENSGT00390000009908.f #31	ENSGT00940000167497	ENSGT00940000156063.k.f #33	ENSGT00940000154978.db #34	ENSGT00940000160339.a #37	ENSGT01100000263512.a.a.b.b.b	ENSGT00940000155201.c.b	ENSGT00940000158472.c	ENSGT00940000159559.c	ENSGT00940000159333.m	ENSGT00940000154895.b.d.a
Golden-line barbel	MODERN SPECIES	16													ENSSGRG00000032124	ENSSGRG00000032125	USP38 (ENSSGRG00000032126) #21	gab1 (ENSSGRG00000032142) #22	p2rx3a (ENSSGRG00000032146)	frem3 (ENSSGRG00000032157) #24	hhip (ENSSGRG00000032248) #26	smad1 (ENSSGRG00000032356) #30	mmaa (ENSSGRG00000032357) #31	zgc:152968 (ENSSGRG00000032358)	ZNF827 (ENSSGRG00000032359) #33	lsm6 (ENSSGRG00000032360) #34	pou4f2 (ENSSGRG00000032362) #37	ednraa (ENSSGRG00000032364)	tmem184c (ENSSGRG00000032496)	prmt9 (ENSSGRG00000032638)	arhgap10 (ENSSGRG00000032639)	nr3c2 (ENSSGRG00000032646)	dclk2a (ENSSGRG00000032773)
Common carp reference	MODERN SPECIES	27	gpalpp1 (ENSCCRG00000073952)	gtf2f2a (ENSCCRG00000021194)	tpt1 (ENSCCRG00000075680)	ENSCCRG00000021260	ENSCCRG00000066054	ENSCCRG00000077328	ENSCCRG00000061810	ENSCCRG00000081400	ENSCCRG00000058337	ENSCCRG00000082194	ENSCCRG00000064959	ENSCCRG00000065723	ENSCCRG00000038047	ENSCCRG00000038049	USP38 (ENSCCRG00000013303) #21	gab1 (ENSCCRG00000019378) #22	frem3 (ENSCCRG00000028893) #24	hhip (ENSCCRG00000027366) #26	ENSCCRG00000082636	ENSCCRG00000027324	smad1 (ENSCCRG00000027267) #30	ENSCCRG00000027251	mmaa (ENSCCRG00000032670) #31	zgc:152968 (ENSCCRG00000027221)	ZNF827 (ENSCCRG00000081976) #33	lsm6 (ENSCCRG00000069344) #34	pou4f2 (ENSCCRG00000056758) #37	ednraa (ENSCCRG00000056916)	tmem184c (ENSCCRG00000013098)	prmt9 (ENSCCRG00000028542)	arhgap10 (ENSCCRG00000069265)
Cyprininae	ANCESTRAL SPECIES	348															ENSGT00940000158403.e #21	ENSGT00940000156801.h.d #22	ENSGT00940000162501.e #24	ENSGT00940000158660.d #26	ENSGT00940000154391.a.a.a #30	ENSGT00390000009908.e #31	ENSGT00940000156063.k.e.b #33	ENSGT00940000156063.k.e.a #33	ENSGT00940000154978.eb #34	ENSGT00940000160339.b #37	ENSGT01100000263512.a.a.b.b.a	ENSGT00940000155201.c.a	ENSGT00940000158472.d	ENSGT00940000159559.d	ENSGT00940000159333.n	ENSGT00940000154895.b.d.b	ENSGT00390000000973.a.b.b
Goldfish	MODERN SPECIES	5	ENSCARG00000004803	gpr137 (ENSCARG00000004784)	syvn1 (ENSCARG00000004758)	smad5 (ENSCARG00000004735)	tgfbi (ENSCARG00000004019)	ENSCARG00000003868	ENSCARG00000003263	polr2g (ENSCARG00000003185)	eef1g (ENSCARG00000003125)	ENSCARG00000003105	klhl4 (ENSCARG00000002891)	ENSCARG00000002854	ENSCARG00000002829	ENSCARG00000002811	USP38 (ENSCARG00000002748) #21	gab1 (ENSCARG00000002694) #22	hhip (ENSCARG00000002126) #26	smad1 (ENSCARG00000041956) #30	mmaa (ENSCARG00000041935) #31	ENSCARG00000041727	ZNF827 (ENSCARG00000041677) #33	lsm6 (ENSCARG00000041648) #34	SSH3 (ENSCARG00000041601)	mrpl18 (ENSCARG00000041588)	ENSCARG00000041521	ENSCARG00000041500	ENSCARG00000041478	ENSCARG00000041467	zgc:92907 (ENSCARG00000041441)	rap2c (ENSCARG00000041410)	mbnl3 (ENSCARG00000041285)
Cyprininae_a	ANCESTRAL SPECIES	217	ENSGT00940000153665.b.a.a.c	ENSGT00940000154490.a.b.d	ENSGT00940000156459.n	ENSGT00690000101915.i.b.b	ENSGT00940000161074.b.h	ENSGT00950000183159.b.c.b.vb	ENSGT00940000158108.h.b	ENSGT00940000156711.k.b	ENSGT00390000015293.h	ENSGT00940000163575	ENSGT00390000016051.a.b	ENSGT00390000006051.v	ENSGT00940000164706.a.a	ENSGT01030000235355.h	ENSGT00940000158403.e #21	ENSGT00940000156801.h.d #22	ENSGT00940000162501.e #24	ENSGT00940000158660.d #26	ENSGT00940000154391.a.a.a #30	ENSGT00390000009908.e #31	ENSGT00940000156063.k.e.b #33	ENSGT00940000156063.k.e.a #33	ENSGT00940000154978.eb #34	ENSGT00940000160339.b #37	ENSGT01100000263512.a.a.b.b.a	ENSGT00940000155201.c.a	ENSGT00940000158472.d	ENSGT00940000159559.d	ENSGT00940000159333.n	ENSGT00940000154895.b.d.b	ENSGT00390000000973.a.b.b
Common carp reference	MODERN SPECIES	22	KLF5 (ENSCCRG00000037437)	pibf1 (ENSCCRG00000022717)	ENSCCRG00000079805	gtf2f2a (ENSCCRG00000067780)	tpt1 (ENSCCRG00000021177)	ENSCCRG00000055600	ENSCCRG00000066165	ENSCCRG00000014657	ENSCCRG00000082093	ENSCCRG00000082558	ENSCCRG00000046648	ENSCCRG00000073180	ENSCCRG00000065683	ENSCCRG00000046610	USP38 (ENSCCRG00000046625) #21	gab1 (ENSCCRG00000013286) #22	frem3 (ENSCCRG00000082222) #24	ENSCCRG00000069470	ENSCCRG00000065239	hhip (ENSCCRG00000063257) #26	smad1 (ENSCCRG00000023915) #30	ENSCCRG00000063408 #31	ENSCCRG00000026423	ZNF827 (ENSCCRG00000035574) #33	lsm6 (ENSCCRG00000079318) #34	pou4f2 (ENSCCRG00000067954) #37	ednraa (ENSCCRG00000064871)	tmem184c (ENSCCRG00000025121)	arhgap10 (ENSCCRG00000075379)	nr3c2 (ENSCCRG00000016208)	dclk2a (ENSCCRG00000023870)
Golden-line barbel	MODERN SPECIES	254	arl6 (ENSSGRG00000009688)	SLC5A7 (ENSSGRG00000009687)	ENSSGRG00000009685	klf12a (ENSSGRG00000009684)	KLF5 (ENSSGRG00000009679)	pibf1 (ENSSGRG00000009416)	gpalpp1 (ENSSGRG00000009396)	gtf2f2a (ENSSGRG00000009342)	tpt1 (ENSSGRG00000009333)	ENSSGRG00000009330	ENSSGRG00000009325	ENSSGRG00000009191	ENSSGRG00000009187	ENSSGRG00000009186	USP38 (ENSSGRG00000008875) #21	gab1 (ENSSGRG00000008835) #22	frem3 (ENSSGRG00000008830) #24	hhip (ENSSGRG00000008769) #26	smad1 (ENSSGRG00000008759) #30	mmaa (ENSSGRG00000008757) #31	mmaa (ENSSGRG00000008756) #31	ENSSGRG00000008755 #33	ZNF827 (ENSSGRG00000008753) #33	lsm6 (ENSSGRG00000008752) #34	pou4f2 (ENSSGRG00000008751) #37	ednraa (ENSSGRG00000008738)	tmem184c (ENSSGRG00000008736)	prmt9 (ENSSGRG00000008533)	prmt9 (ENSSGRG00000008263)	arhgap10 (ENSSGRG00000008260)	nr3c2 (ENSSGRG00000008258)
Zebrafish	MODERN SPECIES		kctd12.2 (ENSDARG00000053542)	ENSDARG00000094556	lmo7b (ENSDARG00000053535)	klf12a (ENSDARG00000015312)	KLF5 (ENSDARG00000015506)	pibf1 (ENSDARG00000013006)	gpalpp1 (ENSDARG00000058287)	gtf2f2a (ENSDARG00000069910)	ENSDARG00000109513	tpt1 (ENSDARG00000092693)	ENSDARG00000095934	zgc:172122 (ENSDARG00000079191)	ENSDARG00000105033	sc:d189 (ENSDARG00000102858)	USP38 (ENSDARG00000075798) #21	gab1 (ENSDARG00000037018) #22	frem3 (ENSDARG00000074677) #24	ENSDARG00000094485	hhip (ENSDARG00000060397) #26	ENSDARG00000094648	smad1 (ENSDARG00000027199) #30	ENSDARG00000115856	mmaa (ENSDARG00000060383) #31	zgc:152968 (ENSDARG00000037002)	ZNF827 (ENSDARG00000076171) #33	ENSDARG00000113986	lsm6 (ENSDARG00000036995) #34	pou4f2 (ENSDARG00000069737) #37	ENSDARG00000095555	ednraa (ENSDARG00000011876)	tmem184c (ENSDARG00000078789)
Euteleosteomorpha	ANCESTRAL SPECIES	38	ENSGT00940000159559	ENSGT00940000168784	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00390000015089 #28	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00390000016264 #19	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000156416.c	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000165755	ENSGT00940000163989.a.a
Acanthomorphata	ANCESTRAL SPECIES	36	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000159922.a.b	ENSGT00940000178415	ENSGT00390000015089 #28	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000156733 #23	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000175002	ENSGT00940000156633.d.b	ENSGT00940000166038	ENSGT00940000166707	ENSGT00940000155951.a	ENSGT00940000155951.b	ENSGT00940000155598.b	ENSGT00950000182907.a.b.a	ENSGT00940000154737.d	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000156733 #23	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000156733 #23	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189
Ovalentaria	ANCESTRAL SPECIES		ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b	ENSGT00390000017018.b	ENSGT00940000155598.a
Mangrove rivulus	MODERN SPECIES		nr3c2 (ENSKMAG00000004298)	arhgap10 (ENSKMAG00000004279)	prmt9 (ENSKMAG00000004201)	tmem184c (ENSKMAG00000004163)	ednraa (ENSKMAG00000004135)	pou4f2 (ENSKMAG00000004126) #37	lsm6 (ENSKMAG00000004105) #34	ZNF827 (ENSKMAG00000004077) #33	mmaa (ENSKMAG00000004050) #31	smad1 (ENSKMAG00000004034) #30	hhip (ENSKMAG00000003991) #26	frem3 (ENSKMAG00000003871) #24	smarca5 (ENSKMAG00000003777)	USP38 (ENSKMAG00000003751) #21	ENSKMAG00000003745	gab1 (ENSKMAG00000003624) #22	INPP4B (ENSKMAG00000003557) #20	ENSKMAG00000003530	znf330 (ENSKMAG00000003483) #18	rnf150a (ENSKMAG00000003468) #17	TBC1D9 (ENSKMAG00000003367) #15	ucp1 (ENSKMAG00000003320) #14	elmod2 (ENSKMAG00000003275) #13	ENSKMAG00000003259	zgc:154142 (ENSKMAG00000003230)	ENSKMAG00000003203	ENSKMAG00000003186	ENSKMAG00000003176	FAM13A (ENSKMAG00000003069)	herc3 (ENSKMAG00000002959)	ppm1kb (ENSKMAG00000002919)
Turquoise killifish	MODERN SPECIES	1611	Nfu_g_1_007107 (ENSNFUG00015001936)	DCLK2 (ENSNFUG00015002191)	ENSNFUG00015002852	nr3c2 (ENSNFUG00015002863)	LSM6 (ENSNFUG00015002878) #34	ENSNFUG00015002886	ZNF827 (ENSNFUG00015002899) #33	MMAA (ENSNFUG00015002925) #31	smad1 (ENSNFUG00015002945) #30	ENSNFUG00015002953	HHIP (ENSNFUG00015002991) #26	frem3 (ENSNFUG00015003128) #24	SMARCA5 (ENSNFUG00015003184)	USP38 (ENSNFUG00015003244) #21	ENSNFUG00015003251	GAB1 (ENSNFUG00015003298) #22	INPP4B (ENSNFUG00015003385) #20	ENSNFUG00015003434	ZNF330 (ENSNFUG00015003443) #18	TBC1D9 (ENSNFUG00015003633) #15	ucp1 (ENSNFUG00015004344) #14	ENSNFUG00015004351	ELMOD2 (ENSNFUG00015004358) #13	GPRIN3 (ENSNFUG00015004361)	ENSNFUG00015004363	ENSNFUG00015004365	ENSNFUG00015004369	PPM1K (ENSNFUG00015004373)	herc3 (ENSNFUG00015004395)	ENSNFUG00015004402	ENSNFUG00015004432
Cyprinodontoidei	ANCESTRAL SPECIES	24	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Poecilia	ANCESTRAL SPECIES	36	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
NAME_6	ANCESTRAL SPECIES	170	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00940000156063.l #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b
Amazon molly	MODERN SPECIES	382	arhgap10 (ENSPFOG00000009231)	prmt9 (ENSPFOG00000009121)	tmem184c (ENSPFOG00000009030)	ednraa (ENSPFOG00000008928)	pou4f2 (ENSPFOG00000008912) #37	ENSPFOG00000008904	lsm6 (ENSPFOG00000008881) #34	ZNF827 (ENSPFOG00000008596) #33	ENSPFOG00000024596 #33	mmaa (ENSPFOG00000008521) #31	smad1 (ENSPFOG00000024550) #30	hhip (ENSPFOG00000008387) #26	frem3 (ENSPFOG00000007960) #24	smarca5 (ENSPFOG00000007649)	USP38 (ENSPFOG00000007554) #21	gab1 (ENSPFOG00000007416) #22	INPP4B (ENSPFOG00000007067) #20	ENSPFOG00000007054	znf330 (ENSPFOG00000006958) #18	rnf150a (ENSPFOG00000006882) #17	TBC1D9 (ENSPFOG00000006407) #15	ucp1 (ENSPFOG00000006307) #14	elmod2 (ENSPFOG00000006198) #13	ENSPFOG00000024226	zgc:154142 (ENSPFOG00000006076)	FAM13A (ENSPFOG00000005807)	herc3 (ENSPFOG00000005400)	ppm1kb (ENSPFOG00000005312)	abcg2d (ENSPFOG00000005134)	pkd2 (ENSPFOG00000004932)	g3bp2a (ENSPFOG00000004671)
Sailfin molly	MODERN SPECIES	2341																gab1 (ENSPLAG00000003360) #22
Guppy	MODERN SPECIES	439	rbm34 (ENSPREG00000023227)	nr3c2 (ENSPREG00000023228)	arhgap10 (ENSPREG00000023229)	prmt9 (ENSPREG00000023230)	tmem184c (ENSPREG00000023231)	ednraa (ENSPREG00000023232)	pou4f2 (ENSPREG00000023234) #37	lsm6 (ENSPREG00000023235) #34	ZNF827 (ENSPREG00000023239) #33	mmaa (ENSPREG00000023243) #31	smad1 (ENSPREG00000023244) #30	hhip (ENSPREG00000023246) #26	frem3 (ENSPREG00000023248) #24	smarca5 (ENSPREG00000023250)	USP38 (ENSPREG00000023251) #21	gab1 (ENSPREG00000000539) #22	INPP4B (ENSPREG00000000549) #20	ENSPREG00000000645	znf330 (ENSPREG00000000669) #18	rnf150a (ENSPREG00000000715) #17	TBC1D9 (ENSPREG00000000815) #15	ucp1 (ENSPREG00000000928) #14	elmod2 (ENSPREG00000001317) #13	ENSPREG00000001339 #13	ENSPREG00000001356	zgc:154142 (ENSPREG00000001381)	ENSPREG00000001463	FAM13A (ENSPREG00000001492)	herc3 (ENSPREG00000001535)	ppm1kb (ENSPREG00000001628)	abcg2d (ENSPREG00000001660)
Platyfish	MODERN SPECIES	19	nr3c2 (ENSXMAG00000013809)	arhgap10 (ENSXMAG00000013826)	prmt9 (ENSXMAG00000017138)	tmem184c (ENSXMAG00000009576)	ednraa (ENSXMAG00000009592)	ENSXMAG00000028074	pou4f2 (ENSXMAG00000018789) #37	lsm6 (ENSXMAG00000009606) #34	ZNF827 (ENSXMAG00000009608) #33	mmaa (ENSXMAG00000009615) #31	smad1 (ENSXMAG00000009618) #30	hhip (ENSXMAG00000009627) #26	frem3 (ENSXMAG00000009662) #24	smarca5 (ENSXMAG00000009678)	USP38 (ENSXMAG00000009721) #21	gab1 (ENSXMAG00000009734) #22	INPP4B (ENSXMAG00000026556) #20	ENSXMAG00000009776	znf330 (ENSXMAG00000030008) #18	rnf150a (ENSXMAG00000009793) #17	TBC1D9 (ENSXMAG00000009805) #15	ucp1 (ENSXMAG00000009829) #14	elmod2 (ENSXMAG00000009842) #13	ENSXMAG00000020181	zgc:154142 (ENSXMAG00000009854)	FAM13A (ENSXMAG00000009862)	herc3 (ENSXMAG00000009868)	ppm1kb (ENSXMAG00000009932)	abcg2d (ENSXMAG00000009943)	pkd2 (ENSXMAG00000009982)	g3bp2a (ENSXMAG00000010011)
NAME_4	ANCESTRAL SPECIES	75	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b
Mummichog	MODERN SPECIES	2199	ENSFHEG00000008135	nr3c2 (ENSFHEG00000008067)	arhgap10 (ENSFHEG00000008052)	prmt9 (ENSFHEG00000008013)	tmem184c (ENSFHEG00000007989)	ednra (ENSFHEG00000007975)	pou4f2 (ENSFHEG00000007959) #37	lsm6 (ENSFHEG00000007948) #34	ZNF827 (ENSFHEG00000007925) #33	mmaa (ENSFHEG00000007906) #31	smad1 (ENSFHEG00000007882) #30	hhip (ENSFHEG00000007843) #26	frem3 (ENSFHEG00000007769) #24	smarca5 (ENSFHEG00000007687)	USP38 (ENSFHEG00000007600) #21	gab1 (ENSFHEG00000007567) #22	INPP4B (ENSFHEG00000007310) #20	ENSFHEG00000007042	znf330 (ENSFHEG00000007032) #18	rnf150a (ENSFHEG00000006997) #17	TBC1D9 (ENSFHEG00000006975) #15	ucp1 (ENSFHEG00000006841) #14	elmod2 (ENSFHEG00000006809) #13	ENSFHEG00000000181	zgc:154142 (ENSFHEG00000006771)	ENSFHEG00000006714	FAM13A (ENSFHEG00000006667)	herc3 (ENSFHEG00000006589)
Sheepshead minnow	MODERN SPECIES	1632															USP38 (ENSCVAG00000003259) #21	gab1 (ENSCVAG00000003337) #22
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025	ENSGT00390000011365.b	ENSGT00390000017018.b
Oryzias_b	ANCESTRAL SPECIES	21	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376.a	ENSGT00940000159025	ENSGT00390000011365.b	ENSGT00390000017018.b
Indian medaka	MODERN SPECIES	35	nr3c2 (ENSOMEG00000003384)	arhgap10 (ENSOMEG00000003450)	prmt9 (ENSOMEG00000003496)	tmem184c (ENSOMEG00000003513)	ednraa (ENSOMEG00000003528)	pou4f2 (ENSOMEG00000000072) #37	lsm6 (ENSOMEG00000000074) #34	ZNF827 (ENSOMEG00000003596) #33	mmaa (ENSOMEG00000000078) #31	smad1 (ENSOMEG00000003686) #30	ENSOMEG00000003709	hhip (ENSOMEG00000003752) #26	frem3 (ENSOMEG00000003781) #24	smarca5 (ENSOMEG00000000086)	USP38 (ENSOMEG00000003844) #21	gab1 (ENSOMEG00000003917) #22	INPP4B (ENSOMEG00000004078) #20	ENSOMEG00000004122	znf330 (ENSOMEG00000004146) #18	rnf150a (ENSOMEG00000004169) #17	TBC1D9 (ENSOMEG00000004216) #15	ucp1 (ENSOMEG00000004260) #14	elmod2 (ENSOMEG00000004287) #13	ENSOMEG00000004300	FAM13A (ENSOMEG00000004354)	herc3 (ENSOMEG00000004389)	ppm1kb (ENSOMEG00000004431)	ENSOMEG00000004449
Javanese ricefish	MODERN SPECIES		nr3c2 (ENSOJAG00000022359)	arhgap10 (ENSOJAG00000022421)	prmt9 (ENSOJAG00000022452)	tmem184c (ENSOJAG00000022467)	ednraa (ENSOJAG00000022486)	pou4f2 (ENSOJAG00000022494) #37	lsm6 (ENSOJAG00000022498) #34	ZNF827 (ENSOJAG00000022502) #33	mmaa (ENSOJAG00000022520) #31	smad1 (ENSOJAG00000022537) #30	ENSOJAG00000000055	hhip (ENSOJAG00000000130) #26	smarca5 (ENSOJAG00000000440)	USP38 (ENSOJAG00000000725) #21	ENSOJAG00000000750	gab1 (ENSOJAG00000000768) #22	INPP4B (ENSOJAG00000000898) #20	ENSOJAG00000001222	znf330 (ENSOJAG00000001223) #18	rnf150a (ENSOJAG00000001233) #17	ucp1 (ENSOJAG00000001268) #14	elmod2 (ENSOJAG00000001273) #13	ENSOJAG00000001287	FAM13A (ENSOJAG00000001297)	ENSOJAG00000001316	herc3 (ENSOJAG00000001374)	ppm1kb (ENSOJAG00000001441)	abcg2d (ENSOJAG00000001514)	pkd2 (ENSOJAG00000001850)	g3bp2a (ENSOJAG00000002124)	uso1 (ENSOJAG00000002287)
Oryzias_a	ANCESTRAL SPECIES	26	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g.a #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189
Chinese medaka	MODERN SPECIES	565	ENSOSIG00000020535	nr3c2 (ENSOSIG00000020530)	arhgap10 (ENSOSIG00000020521)	prmt9 (ENSOSIG00000020508)	tmem184c (ENSOSIG00000020485)	ENSOSIG00000020466	pou4f2 (ENSOSIG00000020460) #37	lsm6 (ENSOSIG00000020457) #34	ZNF827 (ENSOSIG00000020449) #33	mmaa (ENSOSIG00000020442) #31	smad1 (ENSOSIG00000020439) #30	hhip (ENSOSIG00000020369) #26	frem3 (ENSOSIG00000020367) #24	smarca5 (ENSOSIG00000020362)	USP38 (ENSOSIG00000020352) #21	gab1 (ENSOSIG00000020347) #22	ENSOSIG00000020338 #20	ENSOSIG00000020336	TBC1D9 (ENSOSIG00000020323) #15	ucp1 (ENSOSIG00000020302) #14	elmod2 (ENSOSIG00000020294) #13	ENSOSIG00000020292	FAM13A (ENSOSIG00000020265)	herc3 (ENSOSIG00000020169)
Japanese Medaka HdrR	MODERN SPECIES		nr3c2 (ENSORLG00000007530)	arhgap10 (ENSORLG00000007520)	prmt9 (ENSORLG00000007452)	tmem184c (ENSORLG00000007437)	ednraa (ENSORLG00000007423)	pou4f2 (ENSORLG00000007412) #37	lsm6 (ENSORLG00000024158) #34	ZNF827 (ENSORLG00000007396) #33	mmaa (ENSORLG00000007383) #31	smad1 (ENSORLG00000007377) #30	hhip (ENSORLG00000007341) #26	frem3 (ENSORLG00000024662) #24	ENSORLG00000023758 #24	smarca5 (ENSORLG00000021998)	USP38 (ENSORLG00000025584) #21	gab1 (ENSORLG00000022639) #22	INPP4B (ENSORLG00000029712) #20	ENSORLG00000030620	znf330 (ENSORLG00000020063) #18	rnf150a (ENSORLG00000027414) #17	TBC1D9 (ENSORLG00000028286) #15	ucp1 (ENSORLG00000018506) #14	elmod2 (ENSORLG00000007321) #13	ENSORLG00000026998	ENSORLG00000029675	FAM13A (ENSORLG00000007307)	herc3 (ENSORLG00000007283)	ENSORLG00000024714	ENSORLG00000028051	ENSORLG00000029140	ENSORLG00000027843
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00940000182021	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00940000182021	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT01020000230593.A.a.a.b.a	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Eastern happy	MODERN SPECIES	18	nr3c2 (ENSACLG00000025730)	arhgap10 (ENSACLG00000025695)	prmt9 (ENSACLG00000025680)	tmem184c (ENSACLG00000025661)	ednraa (ENSACLG00000025655)	pou4f2 (ENSACLG00000025642) #37	lsm6 (ENSACLG00000025621) #34	ZNF827 (ENSACLG00000025596) #33	mmaa (ENSACLG00000025573) #31	smad1 (ENSACLG00000025551) #30	hhip (ENSACLG00000025463) #26	ENSACLG00000025454	frem3 (ENSACLG00000025404) #24	smarca5 (ENSACLG00000025356)	USP38 (ENSACLG00000025258) #21	gab1 (ENSACLG00000025199) #22	INPP4B (ENSACLG00000025043) #20	ENSACLG00000024911	znf330 (ENSACLG00000024905) #18	rnf150a (ENSACLG00000024899) #17	ENSACLG00000024885	TBC1D9 (ENSACLG00000024858) #15	ucp1 (ENSACLG00000024214) #14	elmod2 (ENSACLG00000024210) #13	ENSACLG00000024205	zgc:154142 (ENSACLG00000024201)	ENSACLG00000023413	FAM13A (ENSACLG00000023269)	herc3 (ENSACLG00000023117)	ppm1kb (ENSACLG00000023085)	ENSACLG00000023078
Zebra mbuna	MODERN SPECIES	1109	arhgap10 (ENSMZEG00005009038)	prmt9 (ENSMZEG00005009068)	tmem184c (ENSMZEG00005009093)	ednraa (ENSMZEG00005009114)	pou4f2 (ENSMZEG00005009128) #37	lsm6 (ENSMZEG00005009146) #34	ZNF827 (ENSMZEG00005009161) #33	mmaa (ENSMZEG00005009182) #31	smad1 (ENSMZEG00005009232) #30	ENSMZEG00005009254	hhip (ENSMZEG00005009266) #26	ENSMZEG00005009316	frem3 (ENSMZEG00005009329) #24	smarca5 (ENSMZEG00005009369)	USP38 (ENSMZEG00005009405) #21	gab1 (ENSMZEG00005009435) #22	INPP4B (ENSMZEG00005009493) #20	ENSMZEG00005009512	znf330 (ENSMZEG00005009522) #18	rnf150a (ENSMZEG00005009552) #17	ENSMZEG00005009578	TBC1D9 (ENSMZEG00005009608) #15	ucp1 (ENSMZEG00005009660) #14	elmod2 (ENSMZEG00005009673) #13	ENSMZEG00005009696	zgc:154142 (ENSMZEG00005009708)	ENSMZEG00005009833	FAM13A (ENSMZEG00005019296)	herc3 (ENSMZEG00005019314)	ppm1kb (ENSMZEG00005019331)	abcg2d (ENSMZEG00005019342)
P. nyererei	MODERN SPECIES	317	nr3c2 (ENSPNYG00000012856)	arhgap10 (ENSPNYG00000012835)	prmt9 (ENSPNYG00000012732)	tmem184c (ENSPNYG00000012680)	ednraa (ENSPNYG00000012650)	pou4f2 (ENSPNYG00000012640) #37	lsm6 (ENSPNYG00000012614) #34	ZNF827 (ENSPNYG00000012573) #33	mmaa (ENSPNYG00000012505) #31	smad1 (ENSPNYG00000012479) #30	ENSPNYG00000012454	hhip (ENSPNYG00000012413) #26	frem3 (ENSPNYG00000012348) #24	smarca5 (ENSPNYG00000012299)	USP38 (ENSPNYG00000012254) #21	gab1 (ENSPNYG00000012209) #22	INPP4B (ENSPNYG00000012150) #20	ENSPNYG00000012123	znf330 (ENSPNYG00000012078) #18	rnf150a (ENSPNYG00000012052) #17	ENSPNYG00000012011	TBC1D9 (ENSPNYG00000011965) #15	ucp1 (ENSPNYG00000011941) #14	elmod2 (ENSPNYG00000011913) #13	ENSPNYG00000011900	zgc:154142 (ENSPNYG00000011477)	ENSPNYG00000011338	ENSPNYG00000011326	FAM13A (ENSPNYG00000011283)	herc3 (ENSPNYG00000011226)	ppm1kb (ENSPNYG00000011197)
Burton s mouthbrooder	MODERN SPECIES	413												hhip (ENSHBUG00000009629) #26	frem3 (ENSHBUG00000009564) #24	smarca5 (ENSHBUG00000009478)	USP38 (ENSHBUG00000009431) #21	gab1 (ENSHBUG00000009388) #22	INPP4B (ENSHBUG00000009289) #20	ENSHBUG00000009144	znf330 (ENSHBUG00000009129) #18	rnf150a (ENSHBUG00000009077) #17	TBC1D9 (ENSHBUG00000009060) #15	ucp1 (ENSHBUG00000008949) #14	elmod2 (ENSHBUG00000008927) #13	ENSHBUG00000008891	zgc:154142 (ENSHBUG00000008878)	ENSHBUG00000008759	FAM13A (ENSHBUG00000007622)	herc3 (ENSHBUG00000007549)	ppm1kb (ENSHBUG00000000191)	abcg2d (ENSHBUG00000007462)	pkd2 (ENSHBUG00000007421)
Lyretail cichlid	MODERN SPECIES	332	nr3c2 (ENSNBRG00000005072)	arhgap10 (ENSNBRG00000005038)	prmt9 (ENSNBRG00000005026)	tmem184c (ENSNBRG00000004993)	ednraa (ENSNBRG00000004980)	pou4f2 (ENSNBRG00000004909) #37	lsm6 (ENSNBRG00000004887) #34	ZNF827 (ENSNBRG00000004845) #33	mmaa (ENSNBRG00000004712) #31	smad1 (ENSNBRG00000004678) #30	ENSNBRG00000004660	hhip (ENSNBRG00000004604) #26	frem3 (ENSNBRG00000004518) #24	smarca5 (ENSNBRG00000004463)	USP38 (ENSNBRG00000004450) #21	gab1 (ENSNBRG00000004404) #22
Nile tilapia	MODERN SPECIES	18	ENSONIG00000010034	arhgap10 (ENSONIG00000010016)	nr3c2 (ENSONIG00000010029)	prmt9 (ENSONIG00000010014)	tmem184c (ENSONIG00000010012)	ednraa (ENSONIG00000010008)	pou4f2 (ENSONIG00000037896) #37	lsm6 (ENSONIG00000010005) #34	ZNF827 (ENSONIG00000010003) #33	mmaa (ENSONIG00000010002) #31	smad1 (ENSONIG00000010000) #30	hhip (ENSONIG00000009998) #26	frem3 (ENSONIG00000009996) #24	smarca5 (ENSONIG00000009993)	USP38 (ENSONIG00000009989) #21	gab1 (ENSONIG00000009987) #22	INPP4B (ENSONIG00000017409) #20	ENSONIG00000025173	ENSONIG00000017414	znf330 (ENSONIG00000017416) #18	rnf150 (ENSONIG00000030179) #17	ENSONIG00000036912	TBC1D9 (ENSONIG00000017420) #15	ucp1 (ENSONIG00000029627) #14	elmod2 (ENSONIG00000017427) #13	ENSONIG00000017440	zgc:154142 (ENSONIG00000017438)	herc3 (ENSONIG00000017442)	ppm1k (ENSONIG00000017445)	abcg2d (ENSONIG00000017446)	pkd2 (ENSONIG00000017449)
Midas cichlid	MODERN SPECIES	500	arhgap10 (ENSACIG00000016458)	prmt9 (ENSACIG00000016532)	tmem184c (ENSACIG00000016638)	ednraa (ENSACIG00000016660)	pou4f2 (ENSACIG00000016679) #37	lsm6 (ENSACIG00000016711) #34	ZNF827 (ENSACIG00000016727) #33	mmaa (ENSACIG00000016787) #31	smad1 (ENSACIG00000016808) #30	ENSACIG00000016826	hhip (ENSACIG00000016839) #26	frem3 (ENSACIG00000016876) #24	ENSACIG00000016943	smarca5 (ENSACIG00000016982)	USP38 (ENSACIG00000017032) #21	gab1 (ENSACIG00000017106) #22	INPP4B (ENSACIG00000017130) #20	ENSACIG00000017167	znf330 (ENSACIG00000017179) #18	rnf150a (ENSACIG00000017204) #17	ENSACIG00000017258	TBC1D9 (ENSACIG00000017296) #15	ucp1 (ENSACIG00000017327) #14	elmod2 (ENSACIG00000017346) #13	ENSACIG00000017357	ENSACIG00000017361	zgc:154142 (ENSACIG00000017367)	ENSACIG00000017440	ENSACIG00000018084	FAM13A (ENSACIG00000018094)	ENSACIG00000018132
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00390000016264 #19	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00940000182021	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a
Pomacentridae_A	ANCESTRAL SPECIES	50													ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00390000016264 #19	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Amphiprion	ANCESTRAL SPECIES		ENSGT00940000157322.b.b	ENSGT00940000157331.b.a	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.a.b.a.b.a.b	ENSGT00940000156644.e.a	ENSGT00940000159781.b	ENSGT00940000160859	ENSGT00950000182787.A.a	ENSGT00940000157057.e	ENSGT00940000157889.g.b	ENSGT00390000013639	ENSGT00940000154406	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.b.g.a.a.a.a	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Clown anemonefish	MODERN SPECIES	2004								ENSAOCG00000014940	lgsn (ENSAOCG00000014972)	ptp4a1 (ENSAOCG00000002589)	ENSAOCG00000001937	ENSAOCG00000015376	frem3 (ENSAOCG00000015497) #24	smarca5 (ENSAOCG00000015578)	USP38 (ENSAOCG00000015640) #21	gab1 (ENSAOCG00000001085) #22
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000010539	RHOU (ENSAPEG00000010570)	dla (ENSAPEG00000010614)	ENSAPEG00000010678	hk1 (ENSAPEG00000010727)	myom2a (ENSAPEG00000010774)	ENSAPEG00000010819	lgsn (ENSAPEG00000010837)	ptp4a1 (ENSAPEG00000010869)	ENSAPEG00000010898	ENSAPEG00000010945	frem3 (ENSAPEG00000010978) #24	ENSAPEG00000011084	smarca5 (ENSAPEG00000011117)	USP38 (ENSAPEG00000011231) #21	gab1 (ENSAPEG00000011280) #22	INPP4B (ENSAPEG00000011366) #20	ENSAPEG00000011489	znf330 (ENSAPEG00000011528) #18	rnf150a (ENSAPEG00000011567) #17	aimp1a (ENSAPEG00000011617)	TBC1D9 (ENSAPEG00000011638) #15	ucp1 (ENSAPEG00000011739) #14	elmod2 (ENSAPEG00000011781) #13	ENSAPEG00000011829	zgc:154142 (ENSAPEG00000011841)	ENSAPEG00000011972	ENSAPEG00000012618	ENSAPEG00000012682	FAM13A (ENSAPEG00000012697)	herc3 (ENSAPEG00000012760)
Spiny chromis	MODERN SPECIES	971												ENSAPOG00000016161	frem3 (ENSAPOG00000016142) #24	smarca5 (ENSAPOG00000016035)	USP38 (ENSAPOG00000000439) #21	gab1 (ENSAPOG00000015857) #22
Bicolor damselfish	MODERN SPECIES	273	nr3c2 (ENSSPAG00000003474)	arhgap10 (ENSSPAG00000003410)	prmt9 (ENSSPAG00000003385)	tmem184c (ENSSPAG00000003350)	ednraa (ENSSPAG00000003314)	pou4f2 (ENSSPAG00000003264) #37	lsm6 (ENSSPAG00000003246) #34	ZNF827 (ENSSPAG00000003227) #33	mmaa (ENSSPAG00000003209) #31	smad1 (ENSSPAG00000003181) #30	ENSSPAG00000003148	hhip (ENSSPAG00000003111) #26	frem3 (ENSSPAG00000003014) #24	smarca5 (ENSSPAG00000002894)	USP38 (ENSSPAG00000002838) #21	gab1 (ENSSPAG00000002811) #22	INPP4B (ENSSPAG00000002647) #20	IL15 (ENSSPAG00000002613) #19	znf330 (ENSSPAG00000002574) #18	rnf150a (ENSSPAG00000002551) #17	aimp1a (ENSSPAG00000002363)	TBC1D9 (ENSSPAG00000002265) #15
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.a.c.b.m.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a
Carangaria	ANCESTRAL SPECIES		ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.a.c.b.m.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00390000016264.b #19	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Barramundi perch	MODERN SPECIES	130	ENSLCAG00010019337	nr3c2 (ENSLCAG00010019366)	arhgap10 (ENSLCAG00010019369)	prmt9 (ENSLCAG00010019378)	tmem184c (ENSLCAG00010019383)	ednraa (ENSLCAG00010019419)	pou4f2 (ENSLCAG00010019522) #37	lsm6 (ENSLCAG00010019526) #34	ZNF827 (ENSLCAG00010019531) #33	mmaa (ENSLCAG00010019538) #31	smad1 (ENSLCAG00010019542) #30	hhip (ENSLCAG00010019547) #26	frem3 (ENSLCAG00010019552) #24	smarca5 (ENSLCAG00010019634)	USP38 (ENSLCAG00010019932) #21	gab1 (ENSLCAG00010019942) #22	INPP4B (ENSLCAG00010019963) #20	ENSLCAG00010020006 #19	znf330 (ENSLCAG00010020011) #18	rnf150a (ENSLCAG00010020019) #17	ENSLCAG00010020024	TBC1D9 (ENSLCAG00010020049) #15
Seriola	ANCESTRAL SPECIES	18	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT01030000234528.A.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Yellowtail amberjack	MODERN SPECIES	2669									mmaa (ENSSLDG00000025241) #31	smad1 (ENSSLDG00000025231) #30	ENSSLDG00000025227	hhip (ENSSLDG00000025216) #26	frem3 (ENSSLDG00000025203) #24	smarca5 (ENSSLDG00000025190)	USP38 (ENSSLDG00000025183) #21	gab1 (ENSSLDG00000025161) #22	INPP4B (ENSSLDG00000025130) #20	ENSSLDG00000025119	znf330 (ENSSLDG00000025111) #18	rnf150a (ENSSLDG00000025109) #17	ENSSLDG00000025104	TBC1D9 (ENSSLDG00000025079) #15	ucp1 (ENSSLDG00000025071) #14	elmod2 (ENSSLDG00000025065) #13	ENSSLDG00000025062	zgc:154142 (ENSSLDG00000025047)	ENSSLDG00000024691	ENSSLDG00000024635
Greater amberjack	MODERN SPECIES	13	nr3c2 (ENSSDUG00000020314)	arhgap10 (ENSSDUG00000020345)	prmt9 (ENSSDUG00000020371)	tmem184c (ENSSDUG00000020385)	ednraa (ENSSDUG00000020409)	pou4f2 (ENSSDUG00000020438) #37	lsm6 (ENSSDUG00000020459) #34	ZNF827 (ENSSDUG00000020473) #33	mmaa (ENSSDUG00000020496) #31	smad1 (ENSSDUG00000020517) #30	ENSSDUG00000020543	hhip (ENSSDUG00000020557) #26	frem3 (ENSSDUG00000020596) #24	smarca5 (ENSSDUG00000020690)	USP38 (ENSSDUG00000020726) #21	gab1 (ENSSDUG00000020752) #22	INPP4B (ENSSDUG00000020852) #20	ENSSDUG00000020975	znf330 (ENSSDUG00000020983) #18
Pleuronectoidei	ANCESTRAL SPECIES	21	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00930000150973.B.f	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.a.c.b.m.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Tongue sole	MODERN SPECIES	19	ENSCSEG00000000500	nr3c2 (ENSCSEG00000000489)	arhgap10 (ENSCSEG00000000467)	prmt9 (ENSCSEG00000000457)	tmem184c (ENSCSEG00000000445)	ednraa (ENSCSEG00000000438)	pou4f2 (ENSCSEG00000000431) #37	lsm6 (ENSCSEG00000000423) #34	ZNF827 (ENSCSEG00000000398) #33	mmaa (ENSCSEG00000000382) #31	smad1 (ENSCSEG00000000370) #30	hhip (ENSCSEG00000000360) #26	frem3 (ENSCSEG00000000347) #24	smarca5 (ENSCSEG00000000328)	USP38 (ENSCSEG00000021205) #21	gab1 (ENSCSEG00000021186) #22	INPP4B (ENSCSEG00000021183) #20	ENSCSEG00000021182	znf330 (ENSCSEG00000021180) #18	rnf150a (ENSCSEG00000021179) #17	TBC1D9 (ENSCSEG00000021176) #15	ucp1 (ENSCSEG00000021172) #14	elmod2 (ENSCSEG00000021174) #13	ENSCSEG00000021090	zgc:154142 (ENSCSEG00000021089)	ENSCSEG00000021088	FAM13A (ENSCSEG00000021086)	herc3 (ENSCSEG00000021082)	ppm1kb (ENSCSEG00000021081)	abcg2d (ENSCSEG00000021080)	pkd2 (ENSCSEG00000021079)
Turbot	MODERN SPECIES	20	nr3c2 (ENSSMAG00000004328)	arhgap10 (ENSSMAG00000004366)	prmt9 (ENSSMAG00000004407)	tmem184c (ENSSMAG00000004486)	ednraa (ENSSMAG00000004502)	pou4f2 (ENSSMAG00000004538) #37	lsm6 (ENSSMAG00000004550) #34	ZNF827 (ENSSMAG00000004583) #33	mmaa (ENSSMAG00000004632) #31	SMAD1 (ENSSMAG00000004644) #30	ENSSMAG00000026272	ENSSMAG00000004670 #26	frem3 (ENSSMAG00000004744) #24	ENSSMAG00000004801	ENSSMAG00000004860 #21	ENSSMAG00000004882 #22	INPP4B (ENSSMAG00000004999) #20	ENSSMAG00000032235	znf330 (ENSSMAG00000005173) #18	rnf150a (ENSSMAG00000005200) #17	ENSSMAG00000005210	TBC1D9 (ENSSMAG00000005232) #15	ucp1 (ENSSMAG00000005526) #14	elmod2 (ENSSMAG00000036172) #13	ENSSMAG00000005541	zgc:154142 (ENSSMAG00000005567)	FAM13A (ENSSMAG00000005633)	herc3 (ENSSMAG00000005759)	ppm1kb (ENSSMAG00000005847)	abcg2d (ENSSMAG00000005869)	pkd2 (ENSSMAG00000005899)
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000178904	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Climbing perch	MODERN SPECIES		ENSATEG00000012310	nr3c2 (ENSATEG00000012390)	arhgap10 (ENSATEG00000012431)	prmt9 (ENSATEG00000012474)	tmem184c (ENSATEG00000012524)	ednraa (ENSATEG00000012561)	pou4f2 (ENSATEG00000012571) #37	lsm6 (ENSATEG00000012610) #34	ZNF827 (ENSATEG00000012638) #33	mmaa (ENSATEG00000012663) #31	SMAD1 (ENSATEG00000012687) #30	hhip (ENSATEG00000012722) #26	ENSATEG00000012793 #24	ENSATEG00000012894	ENSATEG00000012992 #21	ENSATEG00000013022 #22	INPP4B (ENSATEG00000013142) #20	ENSATEG00000013177	znf330 (ENSATEG00000013192) #18	rnf150a (ENSATEG00000013265) #17	ENSATEG00000013284	TBC1D9 (ENSATEG00000013303) #15	ucp1 (ENSATEG00000013384) #14	elmod2 (ENSATEG00000013413) #13	ENSATEG00000026142	zgc:154142 (ENSATEG00000013459)	ENSATEG00000013545	FAM13A (ENSATEG00000013904)	herc3 (ENSATEG00000013999)	ppm1kb (ENSATEG00000014062)	abcg2d (ENSATEG00000014075)
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000000091	ENSBSLG00000000092	ENSBSLG00000000093	pla2g12a (ENSBSLG00000000094)	TTC39B (ENSBSLG00000000186)	snapc3 (ENSBSLG00000000329)	PSIP1 (ENSBSLG00000000339)	bnc2 (ENSBSLG00000000369)	lsm6 (ENSBSLG00000000379) #34	ZNF827 (ENSBSLG00000000392) #33	mmaa (ENSBSLG00000000409) #31	smad1 (ENSBSLG00000000420) #30	hhip (ENSBSLG00000000556) #26	smarca5 (ENSBSLG00000001422)	USP38 (ENSBSLG00000001922) #21	gab1 (ENSBSLG00000001928) #22	INPP4B (ENSBSLG00000002484) #20	ENSBSLG00000003038	znf330 (ENSBSLG00000003602) #18	rnf150a (ENSBSLG00000003637) #17	TBC1D9 (ENSBSLG00000003980) #15	ucp1 (ENSBSLG00000004460) #14	FBXW7 (ENSBSLG00000004463)	ENSBSLG00000004469	dctpp1 (ENSBSLG00000004471)	gatb (ENSBSLG00000004479)	FHIP1A (ENSBSLG00000004523)	sh3d19 (ENSBSLG00000004526)	rps3a (ENSBSLG00000004532)	LRBA (ENSBSLG00000004568)	mab21l2 (ENSBSLG00000006055)
Zig-zag eel	MODERN SPECIES		ENSMAMG00000013837	nr3c2 (ENSMAMG00000013871)	arhgap10 (ENSMAMG00000013908)	prmt9 (ENSMAMG00000013927)	tmem184c (ENSMAMG00000013939)	ednraa (ENSMAMG00000013980)	pou4f2 (ENSMAMG00000013997) #37	lsm6 (ENSMAMG00000014029) #34	ZNF827 (ENSMAMG00000014049) #33	mmaa (ENSMAMG00000014087) #31	SMAD1 (ENSMAMG00000014098) #30	hhip (ENSMAMG00000014156) #26	ENSMAMG00000014200 #24	ENSMAMG00000014294	ENSMAMG00000014345 #21	ENSMAMG00000014375 #22	INPP4B (ENSMAMG00000014457) #20	ENSMAMG00000014501	znf330 (ENSMAMG00000014531) #18	rnf150a (ENSMAMG00000014583) #17	ENSMAMG00000014617	TBC1D9 (ENSMAMG00000014631) #15	ucp1 (ENSMAMG00000027805) #14	elmod2 (ENSMAMG00000026353) #13	ENSMAMG00000024792	zgc:154142 (ENSMAMG00000014783)	ENSMAMG00000014862	FAM13A (ENSMAMG00000015006)	herc3 (ENSMAMG00000015062)	ppm1kb (ENSMAMG00000026247)	abcg2d (ENSMAMG00000015109)
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000016264.b #19	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Fugu	MODERN SPECIES	8	ENSTRUG00000014927	nr3c2 (ENSTRUG00000014871)	arhgap10 (ENSTRUG00000014670)	prmt9 (ENSTRUG00000014623)	tmem184c (ENSTRUG00000014566)	ednra (ENSTRUG00000014468)	pou4f2 (ENSTRUG00000003608) #37	lsm6 (ENSTRUG00000023398) #34	ZNF827 (ENSTRUG00000014413) #33	mmaa (ENSTRUG00000014393) #31	smad1 (ENSTRUG00000014344) #30	hhip (ENSTRUG00000014300) #26	frem3 (ENSTRUG00000014228) #24	smarca5 (ENSTRUG00000014094)	USP38 (ENSTRUG00000014044) #21	gab1 (ENSTRUG00000013968) #22	INPP4B (ENSTRUG00000013776) #20	il15 (ENSTRUG00000013746) #19	znf330 (ENSTRUG00000013678) #18	rnf150a (ENSTRUG00000013568) #17	TBC1D9 (ENSTRUG00000013201) #15	ucp1 (ENSTRUG00000013144) #14	elmod2 (ENSTRUG00000013048) #13	ENSTRUG00000025371	zgc:154142 (ENSTRUG00000025726)	FAM13A (ENSTRUG00000012811)	herc3 (ENSTRUG00000012338)	ppm1kb (ENSTRUG00000012257)	abcg2d (ENSTRUG00000011817)	pkd2 (ENSTRUG00000011563)	g3bp2a (ENSTRUG00000011405)
Tetraodon	MODERN SPECIES	10	prmt9 (ENSTNIG00000017730)	tmem184c (ENSTNIG00000017729)	ednraa (ENSTNIG00000017728)	pou4f2 (ENSTNIG00000017727) #37	tada2b (ENSTNIG00000017726)	lsm6 (ENSTNIG00000017725) #34	ENSTNIG00000017724	ENSTNIG00000017723	ZNF827 (ENSTNIG00000017722) #33	mmaa (ENSTNIG00000017721) #31	smad1 (ENSTNIG00000017720) #30	hhip (ENSTNIG00000017719) #26	frem3 (ENSTNIG00000017718) #24	smarca5 (ENSTNIG00000017717)	USP38 (ENSTNIG00000017716) #21	gab1 (ENSTNIG00000017715) #22	ENSTNIG00000000036	znf330 (ENSTNIG00000006841) #18	rnf150a (ENSTNIG00000006840) #17	TBC1D9 (ENSTNIG00000006839) #15	ucp1 (ENSTNIG00000006838) #14	elmod2 (ENSTNIG00000006837) #13	ENSTNIG00000006836	ENSTNIG00000006887	ENSTNIG00000011050	ENSTNIG00000000341	FAM13A (ENSTNIG00000011049)	herc3 (ENSTNIG00000011048)	ppm1kb (ENSTNIG00000011047)	abcg2d (ENSTNIG00000011046)	pkd2 (ENSTNIG00000011045)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Ballan wrasse	MODERN SPECIES	21	ENSLBEG00000019022	nr3c2 (ENSLBEG00000018678)	arhgap10 (ENSLBEG00000018567)	prmt9 (ENSLBEG00000018523)	tmem184c (ENSLBEG00000018496)	ednraa (ENSLBEG00000018470)	pou4f2 (ENSLBEG00000018457) #37	lsm6 (ENSLBEG00000018441) #34	ZNF827 (ENSLBEG00000018372) #33	mmaa (ENSLBEG00000018336) #31	smad1 (ENSLBEG00000018312) #30	hhip (ENSLBEG00000018285) #26	frem3 (ENSLBEG00000018220) #24	smarca5 (ENSLBEG00000018112)	USP38 (ENSLBEG00000018055) #21	gab1 (ENSLBEG00000018005) #22	INPP4B (ENSLBEG00000017956) #20	ENSLBEG00000017906	ENSLBEG00000017877	znf330 (ENSLBEG00000017836) #18	rnf150a (ENSLBEG00000017809) #17	ENSLBEG00000017791	TBC1D9 (ENSLBEG00000017698) #15	ucp1 (ENSLBEG00000017630) #14	elmod2 (ENSLBEG00000017583) #13	ENSLBEG00000017556	zgc:154142 (ENSLBEG00000017494)	ENSLBEG00000017158	ENSLBEG00000016968	FAM13A (ENSLBEG00000016910)	herc3 (ENSLBEG00000016794)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Perciformes	ANCESTRAL SPECIES	2	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT01030000234528.A.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Pike perch	MODERN SPECIES	45	ENSSLUG00000008618	nr3c2 (ENSSLUG00000008588)	arhgap10 (ENSSLUG00000008414)	prmt9 (ENSSLUG00000008344)	tmem184c (ENSSLUG00000008267)	ednraa (ENSSLUG00000008237)	pou4f2 (ENSSLUG00000008234) #37	lsm6 (ENSSLUG00000008220) #34	ZNF827 (ENSSLUG00000008207) #33	mmaa (ENSSLUG00000008201) #31	smad1 (ENSSLUG00000008187) #30	hhip (ENSSLUG00000008057) #26	frem3 (ENSSLUG00000008040) #24	smarca5 (ENSSLUG00000007075)	USP38 (ENSSLUG00000006944) #21	gab1 (ENSSLUG00000006889) #22	INPP4B (ENSSLUG00000006676) #20	ENSSLUG00000006641	znf330 (ENSSLUG00000006625) #18	rnf150a (ENSSLUG00000006601) #17	aimp1a (ENSSLUG00000006579)	TBC1D9 (ENSSLUG00000006319) #15	ucp1 (ENSSLUG00000006284) #14	elmod2 (ENSSLUG00000006262) #13	ENSSLUG00000006256	zgc:154142 (ENSSLUG00000006186)	ENSSLUG00000006172	FAM13A (ENSSLUG00000005137)	herc3 (ENSSLUG00000004909)	ppm1kb (ENSSLUG00000004881)	abcg2d (ENSSLUG00000004870)
Channel bull blenny	MODERN SPECIES		ENSCGOG00000009920	nr3c2 (ENSCGOG00000009569)	arhgap10 (ENSCGOG00000007952)	prmt9 (ENSCGOG00000007882)	tmem184c (ENSCGOG00000007406)	ednraa (ENSCGOG00000007285)	pou4f2 (ENSCGOG00000007277) #37	lsm6 (ENSCGOG00000007273) #34	ZNF827 (ENSCGOG00000007268) #33	mmaa (ENSCGOG00000007267) #31	smad1 (ENSCGOG00000007211) #30	hhip (ENSCGOG00000007090) #26	frem3 (ENSCGOG00000006684) #24	smarca5 (ENSCGOG00000003682)	USP38 (ENSCGOG00000003439) #21	gab1 (ENSCGOG00000003346) #22	INPP4B (ENSCGOG00000003100) #20	ENSCGOG00000003086	znf330 (ENSCGOG00000002829) #18	rnf150a (ENSCGOG00000002796) #17	TBC1D9 (ENSCGOG00000001526) #15	ucp1 (ENSCGOG00000001414) #14	elmod2 (ENSCGOG00000001393) #13	ENSCGOG00000001391	ENSCGOG00000001389	FAM13A (ENSCGOG00000001257)	herc3 (ENSCGOG00000001152)	ppm1kb (ENSCGOG00000001142)	abcg2d (ENSCGOG00000001141)	pkd2 (ENSCGOG00000001077)	g3bp2a (ENSCGOG00000000973)
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978.jb #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000156733 #23	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376	ENSGT00940000159025
Lumpfish	MODERN SPECIES		ENSCLMG00005005691	nr3c2 (ENSCLMG00005005654)	arhgap10 (ENSCLMG00005005214)	prmt9 (ENSCLMG00005005201)	tmem184c (ENSCLMG00005005174)	ednraa (ENSCLMG00005005170)	pou4f2 (ENSCLMG00005005167) #37	lsm6 (ENSCLMG00005005166) #34	ZNF827 (ENSCLMG00005005160) #33	mmaa (ENSCLMG00005005153) #31	smad1 (ENSCLMG00005005097) #30	hhip (ENSCLMG00005005095) #26	frem3 (ENSCLMG00005005089) #24	smarca5 (ENSCLMG00005004849)	USP38 (ENSCLMG00005004794) #21	gab1 (ENSCLMG00005004785) #22	INPP4B (ENSCLMG00005003749) #20	ENSCLMG00005003737	znf330 (ENSCLMG00005003736) #18	rnf150a (ENSCLMG00005003709) #17	ENSCLMG00005003706	TBC1D9 (ENSCLMG00005002677) #15	ucp1 (ENSCLMG00005002673) #14	elmod2 (ENSCLMG00005002671) #13	ENSCLMG00005002669	zgc:154142 (ENSCLMG00005002668)	FAM13A (ENSCLMG00005002581)	herc3 (ENSCLMG00005002528)	ppm1kb (ENSCLMG00005002520)	abcg2d (ENSCLMG00005002135)	pkd2 (ENSCLMG00005001784)
Stickleback	MODERN SPECIES	4	ENSGACG00000017187	nr3c2 (ENSGACG00000017193)	arhgap10 (ENSGACG00000017201)	prmt9 (ENSGACG00000017206)	tmem184c (ENSGACG00000017214)	ednraa (ENSGACG00000017219)	pou4f2 (ENSGACG00000017221) #37	lsm6 (ENSGACG00000017223) #34	ZNF827 (ENSGACG00000017225) #33	mmaa (ENSGACG00000017228) #31	smad1 (ENSGACG00000017230) #30	hhip (ENSGACG00000017231) #26	frem3 (ENSGACG00000017233) #24	SMARCA5 (ENSGACG00000017238) #23	USP38 (ENSGACG00000017248) #21	gab1 (ENSGACG00000017250) #22	INPP4B (ENSGACG00000017255) #20	il-15 (ENSGACG00000017271)	znf330 (ENSGACG00000017274) #18	rnf150a (ENSGACG00000017275) #17	TBC1D9 (ENSGACG00000017277) #15	ucp1 (ENSGACG00000017283) #14	elmod2 (ENSGACG00000017291) #13	ENSGACG00000017299	FAM13A (ENSGACG00000017308)	herc3 (ENSGACG00000017317)	ppm1kb (ENSGACG00000017322)	abcg2d (ENSGACG00000017328)	pkd2 (ENSGACG00000017335)	g3bp2a (ENSGACG00000017342)	uso1 (ENSGACG00000017347)
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
Gilthead seabream	MODERN SPECIES		ENSSAUG00010005678	nr3c2 (ENSSAUG00010007622)	arhgap10 (ENSSAUG00010007629)	prmt9 (ENSSAUG00010007940)	tmem184c (ENSSAUG00010007969)	ednraa (ENSSAUG00010008000)	pou4f2 (ENSSAUG00010008002) #37	lsm6 (ENSSAUG00010008003) #34	ZNF827 (ENSSAUG00010008005) #33	mmaa (ENSSAUG00010008007) #31	smad1 (ENSSAUG00010008009) #30	hhip (ENSSAUG00010008031) #26	frem3 (ENSSAUG00010008078) #24	smarca5 (ENSSAUG00010008122)	USP38 (ENSSAUG00010008342) #21	gab1 (ENSSAUG00010008355) #22	INPP4B (ENSSAUG00010008419) #20	ENSSAUG00010009529	znf330 (ENSSAUG00010009530) #18	rnf150a (ENSSAUG00010009531) #17	TBC1D9 (ENSSAUG00010009612) #15	ucp1 (ENSSAUG00010012861) #14	elmod2 (ENSSAUG00010012864) #13	ENSSAUG00010012865	zgc:154142 (ENSSAUG00010012868)	FAM13A (ENSSAUG00010012875)	herc3 (ENSSAUG00010013704)	ppm1kb (ENSSAUG00010013751)	abcg2d (ENSSAUG00010013767)	pkd2 (ENSSAUG00010015629)	g3bp2a (ENSSAUG00010016487)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000154778.d	ENSGT00940000154895.b	ENSGT00940000159333.j	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00940000158660 #26	ENSGT00940000162501 #24	ENSGT00940000157297	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT00490000044733	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000154950.y.a.d	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000153216.a.b	ENSGT00950000183033.a.b.a	ENSGT00940000158189	ENSGT00940000156633.d.a	ENSGT00940000166376
European seabass	MODERN SPECIES	20	ENSDLAG00005019020	nr3c2 (ENSDLAG00005018936)	arhgap10 (ENSDLAG00005018687)	prmt9 (ENSDLAG00005018611)	tmem184c (ENSDLAG00005018395)	ednraa (ENSDLAG00005018366)	pou4f2 (ENSDLAG00005026695) #37	ZNF827 (ENSDLAG00005018297) #33	lsm6 (ENSDLAG00005031332) #34	MMAA (ENSDLAG00005031698) #31	SMAD1 (ENSDLAG00005018256) #30	HHIP (ENSDLAG00005017875) #26	FREM3 (ENSDLAG00005017468) #24	ENSDLAG00005017062	ENSDLAG00005016953 #21	ENSDLAG00005016900 #22	INPP4B (ENSDLAG00005015901) #20	ENSDLAG00005028497	znf330 (ENSDLAG00005015792) #18	rnf150a (ENSDLAG00005028800) #17	ENSDLAG00005032230	TBC1D9 (ENSDLAG00005013887) #15	ucp1 (ENSDLAG00005013841) #14	elmod2 (ENSDLAG00005035009) #13	ENSDLAG00005028531	zgc:154142 (ENSDLAG00005013791)	ENSDLAG00005013770	FAM13A (ENSDLAG00005013386)	herc3 (ENSDLAG00005015150)	ppm1kb (ENSDLAG00005028505)	abcg2d (ENSDLAG00005013587)
Large yellow croaker	MODERN SPECIES	481	LRBA (ENSLCRG00005010866)	ENSLCRG00005010803	nr3c2 (ENSLCRG00005010798)	arhgap10 (ENSLCRG00005010761)	prmt9 (ENSLCRG00005010751)	tmem184c (ENSLCRG00005010746)	ednraa (ENSLCRG00005010744)	pou4f2 (ENSLCRG00005010743) #37	ZNF827 (ENSLCRG00005010740) #33	mmaa (ENSLCRG00005010737) #31	smad1 (ENSLCRG00005010722) #30	hhip (ENSLCRG00005010299) #26	frem3 (ENSLCRG00005010273) #24	smarca5 (ENSLCRG00005009183)	USP38 (ENSLCRG00005009154) #21	gab1 (ENSLCRG00005009144) #22	INPP4B (ENSLCRG00005009113) #20	ENSLCRG00005009109	ENSLCRG00005009106	znf330 (ENSLCRG00005009105) #18	rnf150a (ENSLCRG00005009104) #17	ENSLCRG00005009103	TBC1D9 (ENSLCRG00005008729) #15	ucp1 (ENSLCRG00005008719) #14	ENSLCRG00005008716	ENSLCRG00005008713	zgc:154142 (ENSLCRG00005008711)	FAM13A (ENSLCRG00005008256)	herc3 (ENSLCRG00005008121)	ppm1kb (ENSLCRG00005008114)	abcg2d (ENSLCRG00005007880)
Tiger tail seahorse	MODERN SPECIES	518	ENSHCOG00000005715	ENSHCOG00000005704	ENSHCOG00000005701	prmt9 (ENSHCOG00000005691)	tmem184c (ENSHCOG00000005666)	ednraa (ENSHCOG00000005641)	pou4f2 (ENSHCOG00000005600) #37	lsm6 (ENSHCOG00000005591) #34	ZNF827 (ENSHCOG00000005579) #33	mmaa (ENSHCOG00000005568) #31	smad1 (ENSHCOG00000005551) #30	hhip (ENSHCOG00000005531) #26	frem3 (ENSHCOG00000005497) #24	smarca5 (ENSHCOG00000005458)	USP38 (ENSHCOG00000000169) #21	gab1 (ENSHCOG00000005426) #22	INPP4B (ENSHCOG00000005379) #20	ENSHCOG00000005350	znf330 (ENSHCOG00000005340) #18	rnf150a (ENSHCOG00000005319) #17	aimp1a (ENSHCOG00000005309)	TBC1D9 (ENSHCOG00000000805) #15	ucp1 (ENSHCOG00000005249) #14	elmod2 (ENSHCOG00000005233) #13	ENSHCOG00000000143	zgc:154142 (ENSHCOG00000005194)	ENSHCOG00000005171	FAM13A (ENSHCOG00000005154)	ppm1kb (ENSHCOG00000005137)	abcg2d (ENSHCOG00000005110)	pkd2 (ENSHCOG00000004926)
Pinecone sodierfish	MODERN SPECIES		nr3c2 (ENSMMDG00005007914)	arhgap10 (ENSMMDG00005007920)	prmt9 (ENSMMDG00005007933)	tmem184c (ENSMMDG00005007946)	ednraa (ENSMMDG00005007979)	pou4f2 (ENSMMDG00005008334) #37	lsm6 (ENSMMDG00005008336) #34	ZNF827 (ENSMMDG00005008340) #33	mmaa (ENSMMDG00005008343) #31	smad1 (ENSMMDG00005008345) #30	abce1 (ENSMMDG00005008379) #28	hhip (ENSMMDG00005008410) #26	frem3 (ENSMMDG00005008418) #24	smarca5 (ENSMMDG00005008435)	USP38 (ENSMMDG00005008781) #21	gab1 (ENSMMDG00005008802) #22	INPP4B (ENSMMDG00005008873) #20	ENSMMDG00005010736	znf330 (ENSMMDG00005010743) #18	rnf150a (ENSMMDG00005010752) #17	TBC1D9 (ENSMMDG00005010786) #15	ucp1 (ENSMMDG00005012131) #14	elmod2 (ENSMMDG00005012134) #13	ENSMMDG00005012139	zgc:154142 (ENSMMDG00005012149)	ENSMMDG00005012162	ENSMMDG00005012163	FAM13A (ENSMMDG00005012175)	herc3 (ENSMMDG00005012333)	ppm1kb (ENSMMDG00005018374)	abcg2d (ENSMMDG00005018432)
Cod	MODERN SPECIES	16	nr3c2 (ENSGMOG00000001897)	arhgap10 (ENSGMOG00000001911)	prmt9 (ENSGMOG00000001957)	tmem184c (ENSGMOG00000001989)	ednraa (ENSGMOG00000027859)	lsm6 (ENSGMOG00000015550) #34	ZNF827 (ENSGMOG00000028064) #33	mmaa (ENSGMOG00000007456) #31	SMAD1 (ENSGMOG00000007465) #30	ABCE1 (ENSGMOG00000007471) #28	HHIP (ENSGMOG00000007498) #26	FREM3 (ENSGMOG00000007510) #24	ENSGMOG00000024275	ENSGMOG00000007519	ENSGMOG00000007529 #21	ENSGMOG00000007535 #22	INPP4B (ENSGMOG00000016110) #20	ENSGMOG00000035741	ENSGMOG00000016157 #18	rnf150a (ENSGMOG00000016179) #17	ENSGMOG00000016198	ENSGMOG00000035231	ENSGMOG00000016242	ENSGMOG00000025312	ENSGMOG00000018004	ENSGMOG00000017980	ENSGMOG00000033162	ENSGMOG00000036085	pdcd4a (ENSGMOG00000017926)	ENSGMOG00000028743	ENSGMOG00000035845
Protacanthopterygii	ANCESTRAL SPECIES	41	ENSGT00940000159559	ENSGT00940000158472	ENSGT00940000155201.c	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978 #34	ENSGT00940000156063.k #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00390000015089 #28	ENSGT00940000158660 #26	ENSGT00930000150973.B.f	ENSGT00940000162501.d #24	ENSGT00940000156733 #23	ENSGT00940000158403 #21	ENSGT00940000156801.h #22	ENSGT00940000157587.k #20	ENSGT01010000230089	ENSGT00940000178396	ENSGT00390000017043 #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00940000156416.c	ENSGT00950000183033.a.a.c.b	ENSGT00390000014563.a.a.a	ENSGT00390000013948.b	ENSGT00950000183033.a.b.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	342	ENSGT01100000263512.a.a.b.b	ENSGT00940000160339 #37	ENSGT00940000154978.fb #34	ENSGT00940000156063.k.d.b #33	ENSGT00940000154978.gb #34	ENSGT00940000156063.k.c #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00390000015089.m #28	ENSGT00940000158660.e.a #26	ENSGT00930000150973.B.f.a	ENSGT00940000162501.d #24	ENSGT00940000156733.f #23	ENSGT00940000157297.m	ENSGT00940000158403.d #21	ENSGT00940000156801.h.e #22	ENSGT00940000157587.k.d #20
Salmoninae_a	ANCESTRAL SPECIES	88			ENSGT00940000154978.fb #34	ENSGT00940000156063.k.c #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00390000015089.m #28	ENSGT00940000158660.e.a.b #26	ENSGT00930000150973.B.f.a	ENSGT00940000162501.d #24	ENSGT00940000156733.f #23	ENSGT00940000156733.e #23	ENSGT00940000158403.c #21	ENSGT00940000156801.h.f #22	ENSGT00940000157587.k.d #20	ENSGT00940000156801.h.e #22	ENSGT00940000157587.k.c #20	ENSGT00940000165852.f	ENSGT00940000178396.d.a	ENSGT00390000017043.b.b #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.kc.b	ENSGT00940000158189.p.a	ENSGT00940000165755.c.a.b.a	ENSGT00940000165755.c.a.a	ENSGT00940000163989.a.a.w.b
Oncorhynchus	ANCESTRAL SPECIES	6	ENSGT00940000154895.b.g.a.a.a	ENSGT00940000159333.l.a	ENSGT00940000159559.i	ENSGT00940000158472.i	ENSGT00940000155201.c.h	ENSGT01100000263512.a.a.b.b.g	ENSGT00940000160339.e #37	ENSGT00940000154978.gb #34	ENSGT00940000156063.k.c.c.b #33	ENSGT00390000009908.l.a.a #31	ENSGT00940000154391.a.a.e.b #30	ENSGT00390000015089.m.b #28	ENSGT00940000158660.e.a.a #26	ENSGT00940000156733.f.a.a #23	ENSGT00940000158403.c.b #21	ENSGT00940000156801.h.e #22	ENSGT00940000157587.k.d #20	ENSGT00940000165852.f.c	ENSGT00940000178396.d.a	ENSGT00390000017043.b.b #18	ENSGT00940000156171.g.h #17	ENSGT00940000157878.j.b #15	ENSGT00940000160382.j #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.kc.a.a.a	ENSGT00940000158189.p.a	ENSGT00940000165755.c.a.a	ENSGT00940000163989.a.a.w.b	ENSGT00940000165755.c.b.b
Rainbow trout	MODERN SPECIES	10	tmem184c (ENSOMYG00000011983)	ednraa (ENSOMYG00000011872)	pou4f2 (ENSOMYG00000011855) #37	lsm6 (ENSOMYG00000069623) #34	ENSOMYG00000049884	ENSOMYG00000061618	ZNF827 (ENSOMYG00000011791) #33	mmaa (ENSOMYG00000011755) #31	SMAD1 (ENSOMYG00000011704) #30	ABCE1 (ENSOMYG00000011631) #28	ENSOMYG00000011557 #26	ENSOMYG00000060102	ENSOMYG00000011450 #24	ENSOMYG00000009079 #23	ENSOMYG00000008162 #21	ENSOMYG00000008009 #22	ENSOMYG00000066751	ENSOMYG00000007863 #20	bcl10 (ENSOMYG00000006936)	ENSOMYG00000006923	ENSOMYG00000073418	znf330 (ENSOMYG00000006906) #18	ENSOMYG00000024369	ENSOMYG00000006885 #17	TBC1D9 (ENSOMYG00000006807) #15	ENSOMYG00000006427 #14	elmod2 (ENSOMYG00000006365) #13	ENSOMYG00000049758	zgc:154142 (ENSOMYG00000007115)	ENSOMYG00000007078	ENSOMYG00000058519
Oncorhynchus_a	ANCESTRAL SPECIES	104	ENSGT00940000159333.l.a	ENSGT00940000159559.i	ENSGT00940000158472.i	ENSGT00940000155201.c.h	ENSGT01100000263512.a.a.b.b.g	ENSGT00940000160339.e #37	ENSGT00940000154978.gb #34	ENSGT00940000156063.k.c.c.b #33	ENSGT00390000009908.l.a.a #31	ENSGT00940000154391.a.a.e.b #30	ENSGT00390000015089.m.b #28	ENSGT00940000158660.e.a.a #26	ENSGT00940000162501.d.d #24	ENSGT00940000156733.f.a.b #23	ENSGT00940000158403.c.b #21	ENSGT00940000156801.h.e #22	ENSGT00940000157587.k.d #20	ENSGT00940000178396.d.a.a	ENSGT00390000017043.b.a #18
Chinook salmon	MODERN SPECIES	74	brip1 (ENSOTSG00005040455)	ENSOTSG00005040412	arfip2b (ENSOTSG00005040403)	ENSOTSG00005040402	TRIM3 (ENSOTSG00005039954)	ENSOTSG00005039934	ENSOTSG00005039929	trpc4b (ENSOTSG00005039916)	postnb (ENSOTSG00005039815)	ENSOTSG00005039804	clns1a (ENSOTSG00005039799)	frem3 (ENSOTSG00005039797) #24	ENSOTSG00005039796 #24	SMARCA5 (ENSOTSG00005039417) #23	USP38 (ENSOTSG00005039355) #21	gab1 (ENSOTSG00005039312) #22	ENSOTSG00005039298 #20	ENSOTSG00005039294	ENSOTSG00005039290	znf330 (ENSOTSG00005039283) #18	RNF150 (ENSOTSG00005039275) #17	TBC1D9 (ENSOTSG00005038809) #15	ucp1 (ENSOTSG00005038792) #14	elmod2 (ENSOTSG00005038790) #13
Coho salmon	MODERN SPECIES	27	nr3c2 (ENSOKIG00005003769)	arhgap10 (ENSOKIG00005003709)	prmt9 (ENSOKIG00005003643)	tmem184c (ENSOKIG00005003583)	ednraa (ENSOKIG00005003546)	pou4f2 (ENSOKIG00005003532) #37	lsm6 (ENSOKIG00005003525) #34	ZNF827 (ENSOKIG00005003496) #33	mmaa (ENSOKIG00005003478) #31	smad1 (ENSOKIG00005003417) #30	ABCE1 (ENSOKIG00005003373) #28	hhip (ENSOKIG00005003191) #26	frem3 (ENSOKIG00005003091) #24	SMARCA5 (ENSOKIG00005002600) #23	USP38 (ENSOKIG00005002452) #21	GAB1 (ENSOKIG00005002405) #22	ENSOKIG00005002356	ENSOKIG00005002235 #20	ENSOKIG00005002174	ENSOKIG00005002150	znf330 (ENSOKIG00005002106) #18	rnf150a (ENSOKIG00005002078) #17	TBC1D9 (ENSOKIG00005001917) #15	ENSOKIG00005001818 #14	elmod2 (ENSOKIG00005001808) #13	ENSOKIG00005001803	zgc:154142 (ENSOKIG00005001778)	FAM13A (ENSOKIG00005046581)	herc3 (ENSOKIG00005046454)	ENSOKIG00005046441	ENSOKIG00005046430
Salmo	ANCESTRAL SPECIES	86	ENSGT00940000159559.l	ENSGT00940000158472.h	ENSGT00940000155201.c.h	ENSGT01100000263512.a.a.b.b.e	ENSGT00940000160339.h #37	ENSGT00940000154978.fb #34	ENSGT00940000156063.k.c #33	ENSGT00390000009908.j #31	ENSGT00940000154391.a.a #30	ENSGT00390000015089.m.c #28	ENSGT00940000158660.e.a.b #26	ENSGT00930000150973.B.f.a	ENSGT00940000162501.d.b #24	ENSGT00940000156733.f #23	ENSGT00940000158403.d #21	ENSGT00940000156801.h.e #22	ENSGT00940000157587.k.c.a #20	ENSGT00940000165852.f.b	ENSGT00940000178396.d.b	ENSGT00390000017043.b.b #18	ENSGT00940000156171.g.e #17	ENSGT00940000157878.h #15	ENSGT00940000160382.g #14	ENSGT00940000156589.o.b #13	ENSGT00570000079168.b.b.b.w.b	ENSGT01030000234528.A.a.a.j	ENSGT00950000183033.a.b.a.kc.a.b	ENSGT00940000158189.p.b	ENSGT00940000165755.c.a.b.b	ENSGT00940000163989.a.b.q.b	ENSGT00940000166376.f
River trout	MODERN SPECIES	33	ENSSTUG00000003670	nr3c2 (ENSSTUG00000003432)	arhgap10 (ENSSTUG00000001620)	prmt9 (ENSSTUG00000001410)	tmem184c (ENSSTUG00000001369)	ednraa (ENSSTUG00000001355)	pou4f2 (ENSSTUG00000001346) #37	lsm6 (ENSSTUG00000001341) #34	mmaa (ENSSTUG00000001329) #31	smad1 (ENSSTUG00000001280) #30	abce1 (ENSSTUG00000001181) #28	hhip (ENSSTUG00000001042) #26	frem3 (ENSSTUG00000000893) #24	SMARCA5 (ENSSTUG00000000533) #23	USP38 (ENSSTUG00000000445) #21	gab1 (ENSSTUG00000000395) #22	ENSSTUG00000000387	ENSSTUG00000000263 #20	ENSSTUG00000000213	ENSSTUG00000000204	znf330 (ENSSTUG00000000183) #18	rnf150a (ENSSTUG00000000176) #17	TBC1D9 (ENSSTUG00000000158) #15	ucp1 (ENSSTUG00000000119) #14	elmod2 (ENSSTUG00000000066) #13	ENSSTUG00000008681	zgc:154142 (ENSSTUG00000008638)	FAM13A (ENSSTUG00000008228)	herc3 (ENSSTUG00000007826)	ENSSTUG00000007775	ENSSTUG00000007765
Atlantic salmon	MODERN SPECIES	23	prmt9 (ENSSSAG00000075757)	tmem184c (ENSSSAG00000075720)	ednraa (ENSSSAG00000075851)	po4f2 (ENSSSAG00000075716) #37	LSM6 (ENSSSAG00000075714) #34	ENSSSAG00000099769	ZNF827 (ENSSSAG00000108938) #33	mmaa (ENSSSAG00000074476) #31	smad1 (ENSSSAG00000074479) #30	abce1 (ENSSSAG00000002121) #28	ENSSSAG00000075542 #26	ENSSSAG00000104815	ENSSSAG00000089087 #24	ENSSSAG00000002457 #23	ENSSSAG00000003700 #21	ENSSSAG00000003706 #22	ENSSSAG00000099673 #20	ENSSSAG00000084059	ENSSSAG00000111141	zn330 (ENSSSAG00000000376) #18	ENSSSAG00000121513 #17	TBC1D9 (ENSSSAG00000003961) #15	ucp1 (ENSSSAG00000083875) #14	ENSSSAG00000083598	elmod2 (ENSSSAG00000077042) #13	zgc:154142 (ENSSSAG00000002088)	FAM13A (ENSSSAG00000076970)	ENSSSAG00000000632	herc3 (ENSSSAG00000008629)	ENSSSAG00000000595	ppm1kb (ENSSSAG00000000413)
Salmoninae	ANCESTRAL SPECIES	112														ENSGT00940000156733.e #23	ENSGT00940000158403.c #21	ENSGT00940000156801.h.f #22	ENSGT00940000157587.k.c #20	ENSGT00940000165852.f	ENSGT00940000178396	ENSGT00390000017043.b.b #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.kc.b	ENSGT00950000183033.a.a.c.b	ENSGT00950000183033.a.b.a.kc.a.a.a	ENSGT00940000158189	ENSGT00940000165755.c.a.b.b
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1489											ENSHHUG00000032293 #26	ENSHHUG00000032302	frem3 (ENSHHUG00000032317) #24	SMARCA5 (ENSHHUG00000032503) #23	USP38 (ENSHHUG00000032649) #21	gab1 (ENSHHUG00000032659) #22
Huchen	MODERN SPECIES	2758															ENSHHUG00000052480 #21	gab1 (ENSHHUG00000052481) #22
Salmoninae_a	ANCESTRAL SPECIES	88					ENSGT00940000154978.fb #34	ENSGT00940000156063.k.c #33	ENSGT00390000009908 #31	ENSGT00940000154391.a.a #30	ENSGT00390000015089.m #28	ENSGT00940000158660.e.a.b #26	ENSGT00930000150973.B.f.a	ENSGT00940000162501.d #24	ENSGT00940000156733.f #23	ENSGT00940000156733.e #23	ENSGT00940000158403.c #21	ENSGT00940000156801.h.f #22	ENSGT00940000157587.k.d #20	ENSGT00940000156801.h.e #22	ENSGT00940000157587.k.c #20	ENSGT00940000165852.f	ENSGT00940000178396.d.a	ENSGT00390000017043.b.b #18	ENSGT00940000156171.g #17	ENSGT00940000157878 #15	ENSGT00940000160382 #14	ENSGT00940000156589 #13	ENSGT00570000079168.b.b.b	ENSGT01030000234528.A.a.a	ENSGT00950000183033.a.b.a.kc.b	ENSGT00940000158189.p.a	ENSGT00940000165755.c.a.b.a
Salmo	ANCESTRAL SPECIES	80						ENSGT00940000160339.g #37	ENSGT00940000154978.gb #34	ENSGT00940000156063.k.d.a #33	ENSGT00390000009908.i #31	ENSGT00980000203249	ENSGT00390000015089.n #28	ENSGT00940000158660.e.b #26	ENSGT00940000162501.d.a #24	ENSGT00940000156733.e #23	ENSGT00940000158403.c #21	ENSGT00940000156801.h.f #22	ENSGT00940000157587.k.c.b #20	ENSGT00940000165852.f.a	ENSGT00940000178396.c.a	ENSGT00390000017043.a #18	ENSGT00940000156171.g.f #17	ENSGT00940000157878.g #15	ENSGT00940000160382.h #14	ENSGT00940000156589.o.a #13	ENSGT00570000079168.b.b.b.w.a	ENSGT01030000234528.A.a.a.i	ENSGT00950000183033.a.b.a.kc.b	ENSGT00940000158189.p.a	ENSGT00940000165755.c.a.b.a	ENSGT00940000163989.a.b.r	ENSGT00940000156633.d.a.d.a
River trout	MODERN SPECIES	2	ednraa (ENSSTUG00000010978)	pou4f2 (ENSSTUG00000010982) #37	lsm6 (ENSSTUG00000010990) #34	ENSSTUG00000011000 #33	ZNF827 (ENSSTUG00000011010) #33	ENSSTUG00000011022 #31	ENSSTUG00000011037	smad1 (ENSSTUG00000011040) #30	abce1 (ENSSTUG00000011108) #28	ENSSTUG00000011176	hhip (ENSSTUG00000011183) #26	ENSSTUG00000011255	frem3 (ENSSTUG00000011308) #24	SMARCA5 (ENSSTUG00000011757) #23	USP38 (ENSSTUG00000012512) #21	gab1 (ENSSTUG00000012594) #22	ENSSTUG00000012745 #20	ENSSTUG00000015237	ENSSTUG00000015244	ENSSTUG00000015252	znf330 (ENSSTUG00000015267) #18	rnf150a (ENSSTUG00000015312) #17	TBC1D9 (ENSSTUG00000015340) #15	ucp1 (ENSSTUG00000015610) #14	elmod2 (ENSSTUG00000015623) #13	ENSSTUG00000015636	zgc:154142 (ENSSTUG00000015648)	FAM13A (ENSSTUG00000015769)	herc3 (ENSSTUG00000016572)	ENSSTUG00000016857	ENSSTUG00000016998
Atlantic salmon	MODERN SPECIES	27	arhgap10 (ENSSSAG00000100416)	prmt9 (ENSSSAG00000095134)	tmem184c (ENSSSAG00000083589)	ednraa (ENSSSAG00000115983)	PO4F2 (ENSSSAG00000082148) #37	lsm6 (ENSSSAG00000074461) #34	ZNF827 (ENSSSAG00000075711) #33	ENSSSAG00000112570 #31	ENSSSAG00000074456	SMAD1 (ENSSSAG00000075702) #30	ABCE1 (ENSSSAG00000075686) #28	ENSSSAG00000103688 #26	FREM3 (ENSSSAG00000112541) #24	ENSSSAG00000074507 #23	ENSSSAG00000076750 #21	ENSSSAG00000076933 #22	ENSSSAG00000003747 #20	ENSSSAG00000114078	ENSSSAG00000003860	ENSSSAG00000095959	ZNF330 (ENSSSAG00000060983) #18	ENSSSAG00000117525 #17	TBC1D9 (ENSSSAG00000077058) #15	ENSSSAG00000114973 #14	elmod2 (ENSSSAG00000084531) #13	elmod2 (ENSSSAG00000096703) #13	TBC1D9 (ENSSSAG00000077024) #15	ENSSSAG00000077036 #14	ENSSSAG00000122138	zgc:154142 (ENSSSAG00000076957)	FAM13A (ENSSSAG00000043764)
Oncorhynchus	ANCESTRAL SPECIES	92	ENSGT00940000159333.l.b	ENSGT00940000159559.j	ENSGT00940000158472.j	ENSGT00940000155201.c.g	ENSGT01100000263512.a.a.b.b.h	ENSGT00940000160339.f #37	ENSGT00940000154978.fb #34	ENSGT00940000156063.k.c.c.a #33	ENSGT00390000009908.l.a.b #31	ENSGT00940000154391.a.a.e.a #30	ENSGT00390000015089.m.a #28	ENSGT00940000158660.e.a.b #26	ENSGT00940000162501.d.c #24	ENSGT00940000156733.e #23	ENSGT00940000158403.c.a #21	ENSGT00940000156801.h.f #22	ENSGT00940000157587.k.c.c #20
Rainbow trout	MODERN SPECIES	1	arhgap10 (ENSOMYG00000010692)	prmt9 (ENSOMYG00000010769)	tmem184c (ENSOMYG00000010954)	ednraa (ENSOMYG00000011025)	pou4f2 (ENSOMYG00000050024) #37	ENSOMYG00000069532	lsm6 (ENSOMYG00000003164) #34	ZNF827 (ENSOMYG00000003180) #33	mmaa (ENSOMYG00000003234) #31	SMAD1 (ENSOMYG00000003384) #30	ABCE1 (ENSOMYG00000003532) #28	ENSOMYG00000003141 #26	FREM3 (ENSOMYG00000003787) #24	ENSOMYG00000004612 #23	ENSOMYG00000005636 #21	ENSOMYG00000005888 #22	ENSOMYG00000006985 #20	ENSOMYG00000007880	ENSOMYG00000007781	ENSOMYG00000007757	ZNF330 (ENSOMYG00000007730) #18	ENSOMYG00000007660 #17	TBC1D9 (ENSOMYG00000007535) #15	ENSOMYG00000007217 #14	elmod2 (ENSOMYG00000007198) #13	ENSOMYG00000061382	zgc:154142 (ENSOMYG00000006124)	ENSOMYG00000005803	FAM13A (ENSOMYG00000005777)	herc3 (ENSOMYG00000005644)	ENSOMYG00000074155
Oncorhynchus_a	ANCESTRAL SPECIES	88	ENSGT00940000159333.l.b	ENSGT00940000159559.j	ENSGT00940000158472.j	ENSGT00940000155201.c.g	ENSGT01100000263512.a.a.b.b.h	ENSGT00940000160339.f #37	ENSGT00940000154978.fb #34	ENSGT00940000156063.k.c.c.a #33	ENSGT00390000009908.l.a.b #31	ENSGT00940000154391.a.a.e.a #30	ENSGT00390000015089.m.a #28	ENSGT00940000158660.e.a.b #26	ENSGT00940000162501.d.c #24	ENSGT00940000156733.f.b #23	ENSGT00940000158403.c.a #21	ENSGT00940000156801.h.f #22	ENSGT00940000157587.k.c.c #20	ENSGT00940000165852.f.c.a	ENSGT00390000017043.a #18	ENSGT00940000156171.g.g #17	ENSGT00940000157878.j.a #15	ENSGT00940000160382.i #14	ENSGT00940000157878.i #15	ENSGT00940000160382.j #14	ENSGT00940000156589 #13	ENSGT00940000163989.a.b.r.e.a	ENSGT00940000156633.d.a.d.a	ENSGT00940000166376	ENSGT00940000159025.j	ENSGT00390000017018.b.i	ENSGT00940000155598.a
Chinook salmon	MODERN SPECIES	324															USP38 (ENSOTSG00005017866) #21	gab1 (ENSOTSG00005017873) #22
Coho salmon	MODERN SPECIES	3	nr3c2 (ENSOKIG00005025703)	arhgap10 (ENSOKIG00005025825)	prmt9 (ENSOKIG00005026565)	tmem184c (ENSOKIG00005026838)	ednraa (ENSOKIG00005026991)	pou4f2 (ENSOKIG00005027007) #37	lsm6 (ENSOKIG00005027023) #34	ZNF827 (ENSOKIG00005027029) #33	mmaa (ENSOKIG00005027073) #31	SMAD1 (ENSOKIG00005027096) #30	abce1 (ENSOKIG00005027256) #28	HHIP (ENSOKIG00005027412) #26	FREM3 (ENSOKIG00005028146) #24	SMARCA5 (ENSOKIG00005028393) #23	USP38 (ENSOKIG00005029462) #21	gab1 (ENSOKIG00005029585) #22	INPP4B (ENSOKIG00005029671) #20	ENSOKIG00005030514	ENSOKIG00005030537	ENSOKIG00005030564	ENSOKIG00005030594	znf330 (ENSOKIG00005030607) #18	RNF150 (ENSOKIG00005030629) #17	TBC1D9 (ENSOKIG00005030700) #15	ucp1 (ENSOKIG00005031058) #14	elmod2 (ENSOKIG00005031077) #13	ENSOKIG00005031089	ENSOKIG00005031108	ENSOKIG00005031250
Northern pike	MODERN SPECIES	24	arhgap10 (ENSELUG00000014084)	prmt9 (ENSELUG00000000514)	tmem184c (ENSELUG00000014151)	ednraa (ENSELUG00000014189)	pou4f2 (ENSELUG00000014223) #37	LSM6 (ENSELUG00000014301) #34	ZNF827 (ENSELUG00000014353) #33	mmaa (ENSELUG00000014425) #31	smad1 (ENSELUG00000014371) #30	abce1 (ENSELUG00000014503) #28	hhip (ENSELUG00000014550) #26	ENSELUG00000026074	frem3 (ENSELUG00000014604) #24	SMARCA5 (ENSELUG00000014653) #23	USP38 (ENSELUG00000014698) #21	gab1 (ENSELUG00000014794) #22	ENSELUG00000014860 #20	ENSELUG00000014886	ENSELUG00000014904	znf330 (ENSELUG00000014942) #18	rnf150a (ENSELUG00000014972) #17	TBC1D9 (ENSELUG00000015042) #15	ucp1 (ENSELUG00000015079) #14	elmod2 (ENSELUG00000015113) #13	ENSELUG00000015121	zgc:154142 (ENSELUG00000015172)	FAM13A (ENSELUG00000015312)	herc3 (ENSELUG00000015372)	herc56.4 (ENSELUG00000015399)	ENSELUG00000015463	ENSELUG00000026114
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	259															ENSGT00940000158403 #21	ENSGT00940000156801.h.g #22	ENSGT00940000156733.a #23	ENSGT00940000162501 #24	ENSGT00940000158660.g #26	ENSGT00390000015089 #28	ENSGT00940000154391.a.a #30	ENSGT00390000009908 #31	ENSGT00940000156063.k.a #33	ENSGT00940000154978 #34	ENSGT00940000160339.j #37	ENSGT01100000263512.a.a.b.a.b	ENSGT00940000155201.b	ENSGT00940000158472	ENSGT00940000159559.r.a	ENSGT00940000159333	ENSGT00940000154895.a.a
Asian bonytongue	MODERN SPECIES	7	ENSSFOG00015005867	herc3 (ENSSFOG00015017569)	FAM13A (ENSSFOG00015017543)	zgc:154142 (ENSSFOG00015017433)	ENSSFOG00015033242	elmod2 (ENSSFOG00015017381) #13	ucp1 (ENSSFOG00015017355) #14	TBC1D9 (ENSSFOG00015017254) #15	RNF150 (ENSSFOG00015033115) #17	znf330 (ENSSFOG00015017153) #18	ENSSFOG00015029920	ENSSFOG00015017130	INPP4B (ENSSFOG00015017066) #20	kptn (ENSSFOG00015017052)	USP38 (ENSSFOG00015017022) #21	gab1 (ENSSFOG00015016978) #22	SMARCA5 (ENSSFOG00015016794) #23	frem3 (ENSSFOG00015016720) #24	ENSSFOG00015024263	hhip (ENSSFOG00015016659) #26	abce1 (ENSSFOG00015016576) #28	smad1 (ENSSFOG00015016549) #30	mmaa (ENSSFOG00015032323) #31	ZNF827 (ENSSFOG00015026650) #33	lsm6 (ENSSFOG00015016480) #34	POU4F2 (ENSSFOG00015016472) #37	ednrab (ENSSFOG00015016285)	tmem184c (ENSSFOG00015016209)	prmt9 (ENSSFOG00015016190)	arhgap10 (ENSSFOG00015016072)	nr3c2 (ENSSFOG00015016030)
P. kingsleyae	MODERN SPECIES	6	abcg2d (ENSPKIG00000014165)	ppm1kb (ENSPKIG00000014234)	ENSPKIG00000014283	herc3 (ENSPKIG00000014378)	FAM13A (ENSPKIG00000014610)	zgc:154142 (ENSPKIG00000014899)	ENSPKIG00000014970	elmod2 (ENSPKIG00000015008) #13	ucp1 (ENSPKIG00000015063) #14	TBC1D9 (ENSPKIG00000015148) #15	RNF150 (ENSPKIG00000015276) #17	ENSPKIG00000015299	ENSPKIG00000015310	INPP4B (ENSPKIG00000015341) #20	USP38 (ENSPKIG00000015433) #21	gab1 (ENSPKIG00000015550) #22	SMARCA5 (ENSPKIG00000015699) #23	frem3 (ENSPKIG00000015825) #24	hhip (ENSPKIG00000015923) #26	abce1 (ENSPKIG00000015981) #28	smad1 (ENSPKIG00000016048) #30	mmaa (ENSPKIG00000016070) #31	ZNF827 (ENSPKIG00000016117) #33	lsm6 (ENSPKIG00000016176) #34	POU4F2 (ENSPKIG00000016190) #37	ednrab (ENSPKIG00000016218)	tmem184c (ENSPKIG00000016282)	prmt9 (ENSPKIG00000016354)	arhgap10 (ENSPKIG00000016418)	nr3c2 (ENSPKIG00000016457)	dclk2a (ENSPKIG00000016537)
Osteoglossiformes	ANCESTRAL SPECIES	336															ENSGT00940000157587.k.f #20	ENSGT00940000156801.h.h #22	ENSGT00940000156733.b #23	ENSGT00940000158660.h #26	ENSGT00390000013722 #27	ENSGT00940000178415	ENSGT00940000159922.a.b	ENSGT00940000156063.k.b #33	ENSGT00940000163277	ENSGT00390000011932 #35	ENSGT00940000160339.i #37	ENSGT00390000008611	ENSGT01100000263512.a.a.b.a.a	ENSGT00940000155201.a	ENSGT00940000159559.r.b
P. kingsleyae	MODERN SPECIES	112	gria2b (ENSPKIG00000015050)	glrbb (ENSPKIG00000015173)	PDGFC (ENSPKIG00000015228)	CTSO (ENSPKIG00000015268)	tdo2a (ENSPKIG00000015289)	npy2rl (ENSPKIG00000015322)	rbm46 (ENSPKIG00000015334)	LRAT (ENSPKIG00000015351)	ENSPKIG00000015390	fga (ENSPKIG00000015509)	ENSPKIG00000015539	fgb (ENSPKIG00000015556)	sfrp2 (ENSPKIG00000015578)	rnf175 (ENSPKIG00000015604)	INPP4B (ENSPKIG00000015660) #20	GAB1 (ENSPKIG00000015798) #22	SMARCA5 (ENSPKIG00000015885) #23	hhip (ENSPKIG00000016028) #26	anapc10 (ENSPKIG00000016066) #27	ENSPKIG00000016080	ENSPKIG00000016103	ZNF827 (ENSPKIG00000016145) #33	REELD1 (ENSPKIG00000016205)	SLC10A7 (ENSPKIG00000016222) #35	pou4f2 (ENSPKIG00000016243) #37	TTC29 (ENSPKIG00000016257)	ednrab (ENSPKIG00000016285)	tmem184c (ENSPKIG00000016316)	ENSPKIG00000016350	ENSPKIG00000016364	NR3C2 (ENSPKIG00000016396)
Asian bonytongue	MODERN SPECIES	18	CORO2A (ENSSFOG00015013929)	tec (ENSSFOG00015013833)	ENSSFOG00015013782	G3BP2 (ENSSFOG00015013690)	CDKL2 (ENSSFOG00015013655)	abcg2a (ENSSFOG00015013635)	PPM1K (ENSSFOG00015027104)	ENSSFOG00015013565	ENSSFOG00015013544	ENSSFOG00015025504	ucp1 (ENSSFOG00015013477) #14	ENSSFOG00015026393	TBC1D9 (ENSSFOG00015013420) #15	RNF150 (ENSSFOG00015013385) #17	INPP4B (ENSSFOG00015013349) #20	GAB1 (ENSSFOG00015013326) #22	SMARCA5 (ENSSFOG00015013252) #23	hhip (ENSSFOG00015013203) #26	anapc10 (ENSSFOG00015013182) #27	ENSSFOG00015010076 #28	ENSSFOG00015025114	ENSSFOG00015009770	ZNF827 (ENSSFOG00015009634) #33	REELD1 (ENSSFOG00015009578)	slc10a7 (ENSSFOG00015009515) #35	pou4f2 (ENSSFOG00015031288) #37	TTC29 (ENSSFOG00015009429)	ednrab (ENSSFOG00015025904)	tmem184c (ENSSFOG00015009117)	ARHGAP10 (ENSSFOG00015009072)	NR3C2 (ENSSFOG00015009037)
Spotted gar	MODERN SPECIES	670	ENSLOCG00000009225	ENSLOCG00000009216	herc56.4 (ENSLOCG00000009205)	herc3 (ENSLOCG00000009178)	FAM13A (ENSLOCG00000009161)	ENSLOCG00000009144	elmod2 (ENSLOCG00000009137) #13	ucp1 (ENSLOCG00000009127) #14	ENSLOCG00000009116	TBC1D9 (ENSLOCG00000009091) #15	rnf150a (ENSLOCG00000009076) #17	znf330 (ENSLOCG00000009067) #18	ENSLOCG00000009058	INPP4B (ENSLOCG00000009040) #20	USP38 (ENSLOCG00000009016) #21	gab1 (ENSLOCG00000008996) #22	SMARCA5 (ENSLOCG00000008966) #23	frem3 (ENSLOCG00000008948) #24	hhip (ENSLOCG00000008934) #26	anapc10 (ENSLOCG00000008926) #27	abce1 (ENSLOCG00000008914) #28	ENSLOCG00000008896	smad1 (ENSLOCG00000008877) #30	mmaa (ENSLOCG00000008866) #31	ZNF827 (ENSLOCG00000008858) #33	lsm6 (ENSLOCG00000008852) #34	ENSLOCG00000008841	slc10a7 (ENSLOCG00000008832) #35	pou4f2 (ENSLOCG00000008825) #37	TTC29 (ENSLOCG00000008818)	ednraa (ENSLOCG00000008801)
Reedfish	MODERN SPECIES	13	ENSECRG00000002370	ENSECRG00000002353	elmod2 (ENSECRG00000002342) #13	ucp1 (ENSECRG00000002322) #14	ENSECRG00000002222	TBC1D9 (ENSECRG00000002153) #15	ENSECRG00000002118	ENSECRG00000002102	rnf150a (ENSECRG00000002088) #17	ENSECRG00000002075	ENSECRG00000002049	znf330 (ENSECRG00000002027) #18	ENSECRG00000002007	ENSECRG00000001967 #20	USP38 (ENSECRG00000001917) #21	gab1 (ENSECRG00000001874) #22	abce1 (ENSECRG00000001826) #28	anapc10 (ENSECRG00000001787) #27	hhip (ENSECRG00000001763) #26	ENSECRG00000001735 #24	SMARCA5 (ENSECRG00000001537) #23	ENSECRG00000001362	smad1 (ENSECRG00000001215) #30	mmaa (ENSECRG00000001173) #31	ENSECRG00000001155	ZNF827 (ENSECRG00000001085) #33	lsm6 (ENSECRG00000001013) #34	REELD1 (ENSECRG00000000979)	slc10a7 (ENSECRG00000006062) #35	pou4f2 (ENSECRG00000006052) #37	TTC29 (ENSECRG00000006036)
Elephant shark	MODERN SPECIES	1542	ENSCMIG00000019719	ENSCMIG00000019717	ENSCMIG00000019716	SCOC (ENSCMIG00000019712) #10	clgn (ENSCMIG00000019687) #11	ENSCMIG00000019683	elmod2 (ENSCMIG00000019679) #13	ucp1 (ENSCMIG00000019678) #14	TBC1D9 (ENSCMIG00000019541) #15	rnf150a (ENSCMIG00000019503) #17	znf330 (ENSCMIG00000019502) #18	ENSCMIG00000019500	ENSCMIG00000019498	INPP4B (ENSCMIG00000019484) #20	USP38 (ENSCMIG00000019468) #21	gab1 (ENSCMIG00000019463) #22
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000156801.a #22
Hagfish	DUPLICATION
Hagfish	MODERN SPECIES	703											ALKBH8 (ENSEBUG00000004016)	ucp2 (ENSEBUG00000015157)	ENSEBUG00000007604	SMARCA5 (ENSEBUG00000014773) #23	ENSEBUG00000006807	ENSEBUG00000013942 #22
Hagfish	MODERN SPECIES	231					ENSEBUG00000014074	ENSEBUG00000000883	ENSEBUG00000004285	ENSEBUG00000004256	ENSEBUG00000008892	med15 (ENSEBUG00000009354)	ENSEBUG00000004029	ENSEBUG00000007316	ENSEBUG00000007436	ENSEBUG00000015620	ENSEBUG00000015636	ENSEBUG00000007786 #22	spcs3 (ENSEBUG00000011008)	piga (ENSEBUG00000012335)	ENSEBUG00000009453	ENSEBUG00000015285	ENSEBUG00000000340
Cyclostomata	ANCESTRAL SPECIES	146																ENSGT00940000156801.b #22	ENSGT00940000158403 #21	ENSGT00940000157297
Lamprey	MODERN SPECIES	2554																ENSPMAG00000006116 #22	USP38 (ENSPMAG00000006088) #21	SMARCA5 (ENSPMAG00000006011) #23	FREM2 (ENSPMAG00000005957)
Hagfish	MODERN SPECIES	1295	ENSEBUG00000000354	ENSEBUG00000012309	ENSEBUG00000010697	nsdhl (ENSEBUG00000011217)	ENSEBUG00000006395	ENSEBUG00000012873	ENSEBUG00000015986	ENSEBUG00000012864	slc30a9 (ENSEBUG00000016601)	ENSEBUG00000000705	phox2bb (ENSEBUG00000016459)	hdac3 (ENSEBUG00000004149)	mmaa (ENSEBUG00000010821) #31	ENSEBUG00000001753	ENSEBUG00000009930	ENSEBUG00000006893 #22	USP38 (ENSEBUG00000006945) #21	smarca5 (ENSEBUG00000001239)	ARFIP2 (ENSEBUG00000016000)	ENSEBUG00000004640	trim2a (ENSEBUG00000006459)	ENSEBUG00000005611	ENSEBUG00000002014	ENSEBUG00000013393	gnsb (ENSEBUG00000002941)	ENSEBUG00000002232	ENSEBUG00000008584	ENSEBUG00000009449	NBEA (ENSEBUG00000016805)	ENSEBUG00000009459	ENSEBUG00000000999