Rodentia	ANCESTRAL SPECIES	13	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00950000186280	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339
Rodentia_B	ANCESTRAL SPECIES	30	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611
Myomorpha	ANCESTRAL SPECIES	41	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611
Muroidea	ANCESTRAL SPECIES	56	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339
Muroidea_A	ANCESTRAL SPECIES	16	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339
Cricetidae	ANCESTRAL SPECIES	7	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Cricetidae_B	ANCESTRAL SPECIES	5	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Prairie vole	MODERN SPECIES	134			Tmem184c (ENSMOCG00000000751) #9	Scoc (ENSMOCG00000017671) #10	Clgn (ENSMOCG00000016553) #11	Mgat4d (ENSMOCG00000002514) #12	Elmod2 (ENSMOCG00000011005) #13	Ucp1 (ENSMOCG00000010167) #14	Tbc1d9 (ENSMOCG00000005207) #15	Rnf150 (ENSMOCG00000000137) #16	Zfp330 (ENSMOCG00000020520) #17	ENSMOCG00000013054 #18	Inpp4b (ENSMOCG00000010527) #19	ENSMOCG00000003479 #20	Usp38 (ENSMOCG00000000267) #21	Gab1 (ENSMOCG00000013817) #22
Northern American deer mouse	MODERN SPECIES	18	Or10k2 (ENSPEMG00000027328)	Scoc (ENSPEMG00000024835) #10	Clgn (ENSPEMG00000023114) #11	Mgat4d (ENSPEMG00000022918) #12	Elmod2 (ENSPEMG00000028361) #13	Ucp1 (ENSPEMG00000022488) #14	ENSPEMG00000024217	Tbc1d9 (ENSPEMG00000024048) #15	ENSPEMG00000026256	ENSPEMG00000030162	Rnf150 (ENSPEMG00000008599) #16	Zfp330 (ENSPEMG00000022167) #17	Il15 (ENSPEMG00000029894)	Inpp4b (ENSPEMG00000005790) #19	Usp38 (ENSPEMG00000017993) #21	Gab1 (ENSPEMG00000011664) #22	Smarca5 (ENSPEMG00000008060)	Hhip (ENSPEMG00000020265)	ENSPEMG00000027237	Anapc10 (ENSPEMG00000020210)	ENSPEMG00000025681	Abce1 (ENSPEMG00000020086)	Otud4 (ENSPEMG00000000203)	Smad1 (ENSPEMG00000018411)	Mmaa (ENSPEMG00000017778)	1700011L22Rik (ENSPEMG00000017156)	Zfp827 (ENSPEMG00000014314)	Lsm6 (ENSPEMG00000012410)	Slc10a7 (ENSPEMG00000009109)	ENSPEMG00000006082	Pou4f2 (ENSPEMG00000027953)
Cricetinae	ANCESTRAL SPECIES	40	ENSGT01030000234559.a.a.b.a	ENSGT00390000003420.a.a	ENSGT00940000160312	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	226	Scoc (ENSCGRG00001016489) #10	Clgn (ENSCGRG00001017080) #11	Mgat4d (ENSCGRG00001018073) #12	Elmod2 (ENSCGRG00001019628) #13	Ucp1 (ENSCGRG00001020013) #14	Tbc1d9 (ENSCGRG00001021936) #15	ENSCGRG00001016473	ENSCGRG00001022655	Rnf150 (ENSCGRG00001022877) #16	ENSCGRG00001023417	ENSCGRG00001014103	Zfp330 (ENSCGRG00001001331) #17	Il15 (ENSCGRG00001010668)	Inpp4b (ENSCGRG00001016742) #19	Usp38 (ENSCGRG00001008922) #21	Gab1 (ENSCGRG00001010681) #22	Smarca5 (ENSCGRG00001012719)	Hhip (ENSCGRG00001017452)	ENSCGRG00001017973	Abce1 (ENSCGRG00001000394)	Otud4 (ENSCGRG00001004451)	ENSCGRG00001006596	Mmaa (ENSCGRG00001013056)	ENSCGRG00001014492	1700011L22Rik (ENSCGRG00001015849)	Zfp827 (ENSCGRG00001020514)	Lsm6 (ENSCGRG00001017142)	Slc10a7 (ENSCGRG00001018803)	ENSCGRG00001013716	Pou4f2 (ENSCGRG00001001534)	Ttc29 (ENSCGRG00001003512)
Golden Hamster	MODERN SPECIES	692				Tecr (ENSMAUG00000016937)	Ndufb7 (ENSMAUG00000000462)	ENSMAUG00000011485	Clgn (ENSMAUG00000018981) #11	Mgat4d (ENSMAUG00000008813) #12	Elmod2 (ENSMAUG00000017426) #13	Ucp1 (ENSMAUG00000001700) #14	Tbc1d9 (ENSMAUG00000007342) #15	ENSMAUG00000000314 #17	ENSMAUG00000003125 #18	Inpp4b (ENSMAUG00000006303) #19	Usp38 (ENSMAUG00000015498) #21	Gab1 (ENSMAUG00000009430) #22	Smarca5 (ENSMAUG00000015902)	Hhip (ENSMAUG00000012341)	ENSMAUG00000014510	ENSMAUG00000006512	Otud4 (ENSMAUG00000000475)	ENSMAUG00000020567	Smad1 (ENSMAUG00000020113)	Mmaa (ENSMAUG00000014130)	1700011L22Rik (ENSMAUG00000016201)	Zfp827 (ENSMAUG00000012963)	Lsm6 (ENSMAUG00000014938)	Slc10a7 (ENSMAUG00000019575)	ENSMAUG00000016659	Pou4f2 (ENSMAUG00000018882)	Ttc29 (ENSMAUG00000010655)
Murinae	ANCESTRAL SPECIES	15	ENSGT00950000182886.a.a.b	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339
Mus	ANCESTRAL SPECIES	6	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339
Mus_A	ANCESTRAL SPECIES	8	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339
Mus_B	ANCESTRAL SPECIES	6	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863	ENSGT00940000156171 #16	ENSGT00390000017043.j #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339
Mouse	MODERN SPECIES	17	Dnajb1 (ENSMUSG00000005483)	Tecr (ENSMUSG00000031708)	Ndufb7 (ENSMUSG00000033938)	Or10k2 (ENSMUSG00000047286)	Scoc (ENSMUSG00000063253) #10	Clgn (ENSMUSG00000002190) #11	Mgat4d (ENSMUSG00000035057) #12	Elmod2 (ENSMUSG00000035151) #13	Ucp1 (ENSMUSG00000031710) #14	Tbc1d9 (ENSMUSG00000031709) #15	Rnf150 (ENSMUSG00000047747) #16	Zfp330 (ENSMUSG00000031711) #17	Il15 (ENSMUSG00000031712)	Inpp4b (ENSMUSG00000037940) #19	Usp38 (ENSMUSG00000038250) #21	Gab1 (ENSMUSG00000031714) #22	Smarca5 (ENSMUSG00000031715)	Frem3 (ENSMUSG00000042353)	Gypa (ENSMUSG00000051839)	Hhip (ENSMUSG00000064325)	Anapc10 (ENSMUSG00000036977)	Abce1 (ENSMUSG00000058355)	Otud4 (ENSMUSG00000036990)	Smad1 (ENSMUSG00000031681)	Mmaa (ENSMUSG00000037022)	1700011L22Rik (ENSMUSG00000031682)	Zfp827 (ENSMUSG00000071064)	Lsm6 (ENSMUSG00000031683)	Slc10a7 (ENSMUSG00000031684)	Rbmxl1 (ENSMUSG00000037070)	Pou4f2 (ENSMUSG00000031688)
Mus_C	ANCESTRAL SPECIES	5	ENSGT00390000018759	ENSGT00940000161377	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00940000157878 #15	ENSGT00860000135863	ENSGT00940000156171 #16	ENSGT00390000017043.j #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00960000189829	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00550000075214	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000153425.a.a.b.a	ENSGT00940000160339
Steppe mouse	MODERN SPECIES	3219												Il15 (ENSMSIG00000028262)	Inpp4b (ENSMSIG00000028134) #19	ENSMSIG00000028125	Usp38 (ENSMSIG00000028091) #21	Gab1 (ENSMSIG00000028070) #22	Smarca5 (ENSMSIG00000028055)	Frem3 (ENSMSIG00000028048)	Gypa (ENSMSIG00000028045)	ENSMSIG00000028035	ENSMSIG00000028033	Hhip (ENSMSIG00000028023)	Anapc10 (ENSMSIG00000028017)	Abce1 (ENSMSIG00000028007)	ENSMSIG00000028006	Otud4 (ENSMSIG00000027970)
spretus	MODERN SPECIES	17	Dnajb1 (MGP_SPRETEiJ_G0032392)	Tecr (MGP_SPRETEiJ_G0032391)	Ndufb7 (MGP_SPRETEiJ_G0032390)	Or10k2 (MGP_SPRETEiJ_G0032389)	Clgn (MGP_SPRETEiJ_G0032388) #11	Mgat4d (MGP_SPRETEiJ_G0032387) #12	Elmod2 (MGP_SPRETEiJ_G0032386) #13	Ucp1 (MGP_SPRETEiJ_G0032385) #14	Tbc1d9 (MGP_SPRETEiJ_G0032384) #15	MGP_SPRETEiJ_G0032383	Rnf150 (MGP_SPRETEiJ_G0032382) #16	MGP_SPRETEiJ_G0032381 #17	Il15 (MGP_SPRETEiJ_G0032380)	Inpp4b (MGP_SPRETEiJ_G0032379) #19	Usp38 (MGP_SPRETEiJ_G0032378) #21	Gab1 (MGP_SPRETEiJ_G0032377) #22	Smarca5 (MGP_SPRETEiJ_G0032376)	Frem3 (MGP_SPRETEiJ_G0032375)	Gypa (MGP_SPRETEiJ_G0032374)	Hhip (MGP_SPRETEiJ_G0032373)	Anapc10 (MGP_SPRETEiJ_G0032372)	Abce1 (MGP_SPRETEiJ_G0032371)	Otud4 (MGP_SPRETEiJ_G0032370)	Smad1 (MGP_SPRETEiJ_G0032369)	Mmaa (MGP_SPRETEiJ_G0032368)	1700011L22Rik (MGP_SPRETEiJ_G0032367)	MGP_SPRETEiJ_G0032366	Lsm6 (MGP_SPRETEiJ_G0032365)	Slc10a7 (MGP_SPRETEiJ_G0032364)	Pou4f2 (MGP_SPRETEiJ_G0032363)	Ttc29 (MGP_SPRETEiJ_G0032362)
Ryukyu mouse	MODERN SPECIES	17	Tecr (MGP_CAROLIEiJ_G0031272)	Ndufb7 (MGP_CAROLIEiJ_G0031271)	Or10k2 (MGP_CAROLIEiJ_G0031270)	MGP_CAROLIEiJ_G0031269 #10	MGP_CAROLIEiJ_G0031268 #11	Mgat4d (MGP_CAROLIEiJ_G0031267) #12	Elmod2 (MGP_CAROLIEiJ_G0031266) #13	Ucp1 (MGP_CAROLIEiJ_G0031265) #14	Tbc1d9 (MGP_CAROLIEiJ_G0031264) #15	MGP_CAROLIEiJ_G0031263	Rnf150 (MGP_CAROLIEiJ_G0031262) #16	Zfp330 (MGP_CAROLIEiJ_G0031261) #17	Il15 (MGP_CAROLIEiJ_G0031260)	Inpp4b (MGP_CAROLIEiJ_G0031259) #19	Usp38 (MGP_CAROLIEiJ_G0031258) #21	Gab1 (MGP_CAROLIEiJ_G0031257) #22	MGP_CAROLIEiJ_G0031256	Frem3 (MGP_CAROLIEiJ_G0031255)	Gypa (MGP_CAROLIEiJ_G0031254)	Hhip (MGP_CAROLIEiJ_G0031253)	Anapc10 (MGP_CAROLIEiJ_G0031252)	Abce1 (MGP_CAROLIEiJ_G0031251)	Otud4 (MGP_CAROLIEiJ_G0031250)	Smad1 (MGP_CAROLIEiJ_G0031249)	Mmaa (MGP_CAROLIEiJ_G0031248)	1700011L22Rik (MGP_CAROLIEiJ_G0031247)	MGP_CAROLIEiJ_G0031246	Lsm6 (MGP_CAROLIEiJ_G0031245)	Slc10a7 (MGP_CAROLIEiJ_G0031244)	MGP_CAROLIEiJ_G0031243	Pou4f2 (MGP_CAROLIEiJ_G0031242)
Shrew mouse	MODERN SPECIES	12	Tecr (MGP_PahariEiJ_G0022878)	Ndufb7 (MGP_PahariEiJ_G0022877)	Or10k2 (MGP_PahariEiJ_G0022876)	MGP_PahariEiJ_G0022875 #10	Clgn (MGP_PahariEiJ_G0022874) #11	Mgat4d (MGP_PahariEiJ_G0022873) #12	Elmod2 (MGP_PahariEiJ_G0022872) #13	Ucp1 (MGP_PahariEiJ_G0022871) #14	Tbc1d9 (MGP_PahariEiJ_G0022870) #15	MGP_PahariEiJ_G0022869	Rnf150 (MGP_PahariEiJ_G0022868) #16	Zfp330 (MGP_PahariEiJ_G0022867) #17	Il15 (MGP_PahariEiJ_G0022866)	Inpp4b (MGP_PahariEiJ_G0022865) #19	Usp38 (MGP_PahariEiJ_G0022864) #21	Gab1 (MGP_PahariEiJ_G0022863) #22	Smarca5 (MGP_PahariEiJ_G0022862)	MGP_PahariEiJ_G0022861	Gypa (MGP_PahariEiJ_G0022860)	Hhip (MGP_PahariEiJ_G0022859)	Anapc10 (MGP_PahariEiJ_G0022858)	Abce1 (MGP_PahariEiJ_G0022857)	MGP_PahariEiJ_G0022856	Smad1 (MGP_PahariEiJ_G0022855)	Mmaa (MGP_PahariEiJ_G0022854)	1700011L22Rik (MGP_PahariEiJ_G0022853)	MGP_PahariEiJ_G0022852	Lsm6 (MGP_PahariEiJ_G0022851)	Slc10a7 (MGP_PahariEiJ_G0022850)	MGP_PahariEiJ_G0022849	Pou4f2 (MGP_PahariEiJ_G0022848)
Rat	MODERN SPECIES	10	Tecr (ENSRNOG00000021808)	Ndufb7 (ENSRNOG00000028717)	Or10k2 (ENSRNOG00000028439)	Scoc (ENSRNOG00000003853) #10	Clgn (ENSRNOG00000003755) #11	Elmod2 (ENSRNOG00000028176) #13	Ucp1 (ENSRNOG00000003580) #14	Tbc1d9 (ENSRNOG00000003496) #15	Rnf150 (ENSRNOG00000003479) #16	Zfp330 (ENSRNOG00000003461) #17	LOC688712 (ENSRNOG00000033819)	Il15 (ENSRNOG00000003439)	Inpp4b (ENSRNOG00000018382) #19	AABR07043598.1 (ENSRNOG00000028320)	Usp38 (ENSRNOG00000026880) #21	Gab1 (ENSRNOG00000017879) #22	Smarca5 (ENSRNOG00000018149)	Frem3 (ENSRNOG00000039152)	ENSRNOG00000063111	Gypa (ENSRNOG00000062794)	Hhip (ENSRNOG00000018268)	Anapc10 (ENSRNOG00000018296)	Abce1 (ENSRNOG00000018345)	Otud4 (ENSRNOG00000018477)	Smad1 (ENSRNOG00000018483)	Mmaa (ENSRNOG00000011618)	LOC498933 (ENSRNOG00000011671)	Zfp827 (ENSRNOG00000011697)	Slc10a7 (ENSRNOG00000011991)	Rbmxl1 (ENSRNOG00000062375)	AABR07043626.1 (ENSRNOG00000033487)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1233	Mgst2 (ENSNGAG00000017878)	Maml3 (ENSNGAG00000020253)	Scoc (ENSNGAG00000011163) #10	Clgn (ENSNGAG00000013400) #11	Mgat4d (ENSNGAG00000019938) #12	Elmod2 (ENSNGAG00000001153) #13	Ucp1 (ENSNGAG00000003442) #14	Tbc1d9 (ENSNGAG00000007389) #15	Rnf150 (ENSNGAG00000018575) #16	ENSNGAG00000001858	Zfp330 (ENSNGAG00000004253) #17	ENSNGAG00000003516	Inpp4b (ENSNGAG00000004652) #19	ENSNGAG00000017839	Usp38 (ENSNGAG00000020013) #21	Gab1 (ENSNGAG00000015926) #22	Smarca5 (ENSNGAG00000000441)	ENSNGAG00000009664	Fstl5 (ENSNGAG00000018141)
Lesser Egyptian jerboa	MODERN SPECIES	57	Noct (ENSJJAG00000019776)	Elf2 (ENSJJAG00000001703)	Rab33b (ENSJJAG00000023756)	Setd7 (ENSJJAG00000006328)	Mgst2 (ENSJJAG00000009542)	Maml3 (ENSJJAG00000021946)	Mgat4d (ENSJJAG00000009209) #12	Elmod2 (ENSJJAG00000018795) #13	Ucp1 (ENSJJAG00000019452) #14	Tbc1d9 (ENSJJAG00000012857) #15	Rnf150 (ENSJJAG00000016691) #16	ENSJJAG00000023235 #17	Il15 (ENSJJAG00000000182)	Inpp4b (ENSJJAG00000011391) #19	ENSJJAG00000017034	Gab1 (ENSJJAG00000023862) #22	Smarca5 (ENSJJAG00000014965)	ENSJJAG00000016555 #9	Ednra (ENSJJAG00000019465)	Ttc29 (ENSJJAG00000021357)	ENSJJAG00000020665	Pou4f2 (ENSJJAG00000022187)	Slc10a7 (ENSJJAG00000020694)	ENSJJAG00000013845	ENSJJAG00000019609	Mmaa (ENSJJAG00000012406)	ENSJJAG00000019141	Otud4 (ENSJJAG00000011777)	Hhip (ENSJJAG00000012058)	Prmt9 (ENSJJAG00000022258)	Arhgap10 (ENSJJAG00000024127)
Kangaroo rat	MODERN SPECIES	438	Rab33b (ENSDORG00000023618)	Setd7 (ENSDORG00000004857)	Mgst2 (ENSDORG00000009124)	ENSDORG00000009125	Scoc (ENSDORG00000028512) #10	Clgn (ENSDORG00000000175) #11	Elmod2 (ENSDORG00000026741) #13	Ucp1 (ENSDORG00000001952) #14	Tbc1d9 (ENSDORG00000001961) #15	Rnf150 (ENSDORG00000012239) #16	Zfp330 (ENSDORG00000010322) #17	Il15 (ENSDORG00000014153)	Inpp4b (ENSDORG00000014154) #19	ENSDORG00000023817	Usp38 (ENSDORG00000004940) #21	Gab1 (ENSDORG00000015902) #22	Smarca5 (ENSDORG00000003466)	Hhip (ENSDORG00000016419)	ENSDORG00000016690	Abce1 (ENSDORG00000016691)	Otud4 (ENSDORG00000016692)	Smad1 (ENSDORG00000008067)	ENSDORG00000008070	Zfp827 (ENSDORG00000008073)	Lsm6 (ENSDORG00000000933)	Slc10a7 (ENSDORG00000001306)	Pou4f2 (ENSDORG00000004448)	Ttc29 (ENSDORG00000001176)	Ednra (ENSDORG00000014305)	ENSDORG00000028284 #9	Prmt9 (ENSDORG00000010111)
Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611
Hystricomorpha	ANCESTRAL SPECIES	38										ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00510000047351.b	ENSGT00940000162501	ENSGT00940000158660	ENSGT00390000013722.a.a	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b.d
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00940000160791.A	ENSGT00940000155694	ENSGT00390000018433.s.b	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000154895.a.a	ENSGT00390000010038	ENSGT00940000159333	ENSGT00940000159559	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00510000047351.b	ENSGT00940000162501	ENSGT00940000158660	ENSGT00390000013722.a.a	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611	ENSGT01100000263512.a.a.b.d
Hystricomorpha_b	ANCESTRAL SPECIES	89	ENSGT00940000160791.A	ENSGT00940000155694	ENSGT00390000018433.s.b	ENSGT01050000244827.C.c.a.a	ENSGT00940000154778	ENSGT00940000154895.a.a	ENSGT00390000010038	ENSGT00940000159333	ENSGT00940000159559	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22
Long-tailed chinchilla	MODERN SPECIES	178	MAB21L2 (ENSCLAG00000017837)	LRBA (ENSCLAG00000009578)	DCLK2 (ENSCLAG00000009217)	IQCM (ENSCLAG00000008040)	NR3C2 (ENSCLAG00000007723)	ARHGAP10 (ENSCLAG00000007081)	ENSCLAG00000006732	LRAT (ENSCLAG00000006584)	ENSCLAG00000005907	TBC1D9 (ENSCLAG00000005220) #15	RNF150 (ENSCLAG00000004503) #16	ZNF330 (ENSCLAG00000004258) #17	IL15 (ENSCLAG00000004056)	INPP4B (ENSCLAG00000007216) #19	USP38 (ENSCLAG00000014109) #21	GAB1 (ENSCLAG00000005522) #22
Degu	MODERN SPECIES	301											RNF150 (ENSODEG00000001391) #16	ENSODEG00000000107 #17	IL15 (ENSODEG00000000125)	INPP4B (ENSODEG00000000245) #19	USP38 (ENSODEG00000000359) #21	GAB1 (ENSODEG00000000395) #22
Guinea pig	MODERN SPECIES	7	PRSS48 (ENSCPOG00000000281)	SH3D19 (ENSCPOG00000008883)	RPS3A (ENSCPOG00000015569)	MAB21L2 (ENSCPOG00000034419)	LRBA (ENSCPOG00000008202)	DCLK2 (ENSCPOG00000008193)	IQCM (ENSCPOG00000022670)	NR3C2 (ENSCPOG00000007770)	ARHGAP10 (ENSCPOG00000007759)	TBC1D9 (ENSCPOG00000007373) #15	RNF150 (ENSCPOG00000004096) #16	ZNF330 (ENSCPOG00000011875) #17	IL15 (ENSCPOG00000008232)	INPP4B (ENSCPOG00000026234) #19	USP38 (ENSCPOG00000008971) #21	GAB1 (ENSCPOG00000031770) #22	LRAT (ENSCPOG00000034177)	FREM3 (ENSCPOG00000038428)	HHIP (ENSCPOG00000023375)	ENSCPOG00000031256	ANAPC10 (ENSCPOG00000032592)	ABCE1 (ENSCPOG00000007367)	OTUD4 (ENSCPOG00000007371)	SMAD1 (ENSCPOG00000009073)	MMAA (ENSCPOG00000004149)	ZNF827 (ENSCPOG00000009087)	LSM6 (ENSCPOG00000032655)	SLC10A7 (ENSCPOG00000015391)	POU4F2 (ENSCPOG00000013770)	TTC29 (ENSCPOG00000007443)	ENSCPOG00000040663
Naked mole-rat female	MODERN SPECIES	22	RNF150 (ENSHGLG00000000594) #16	ENSHGLG00000048416	ZNF330 (ENSHGLG00000000725) #17	ENSHGLG00000042945	ENSHGLG00000007865	IL15 (ENSHGLG00000038275)	ENSHGLG00000047631	ENSHGLG00000001548	ENSHGLG00000019770	ENSHGLG00000049550	ENSHGLG00000042451	ENSHGLG00000000870 #19	ENSHGLG00000049616	ENSHGLG00000001875 #21	ENSHGLG00000038593	ENSHGLG00000002344 #22	ENSHGLG00000032409 #9	LRAT (ENSHGLG00000045268)	ENSHGLG00000000458	ENSHGLG00000000499	ENSHGLG00000001008	ENSHGLG00000041757	ENSHGLG00000048241	ANAPC10 (ENSHGLG00000038398)	ABCE1 (ENSHGLG00000001909)	ENSHGLG00000046999	ENSHGLG00000050361	ENSHGLG00000000238	MMAA (ENSHGLG00000043526)	ZNF827 (ENSHGLG00000002037)	ENSHGLG00000032143
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00960000191551	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00520000060562	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339
Marmotini	ANCESTRAL SPECIES	45	ENSGT00390000004827	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828 #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00960000191551	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611
Marmotini_b	ANCESTRAL SPECIES	115	ENSGT00940000160288	ENSGT00950000183201.b.b.a	ENSGT00390000008828.bb.a.a #10	ENSGT00390000008828.bb.a.b #10	ENSGT00950000182915.a.a.b #11	ENSGT00940000161998 #12	ENSGT00940000156589 #13	ENSGT00940000160382 #14	ENSGT00910000148499	ENSGT00940000157878 #15	ENSGT00940000156171 #16	ENSGT00390000017043 #17	ENSGT00390000016264	ENSGT00940000157587 #19	ENSGT00940000158403 #21	ENSGT00940000156801 #22	ENSGT00940000156733	ENSGT00940000162501	ENSGT00960000191551	ENSGT00940000158660	ENSGT00390000013722	ENSGT00390000015089	ENSGT00940000160512	ENSGT00940000154391.a.a	ENSGT00390000009908	ENSGT00940000156063	ENSGT00940000154978	ENSGT00940000163277	ENSGT00390000011932	ENSGT00940000160339	ENSGT00390000008611
Arctic ground squirrel	MODERN SPECIES	107															USP38 (ENSUPAG00010000887) #21	GAB1 (ENSUPAG00010000769) #22	ENSUPAG00010000759	SMARCA5 (ENSUPAG00010000746)	FREM3 (ENSUPAG00010000720)	ENSUPAG00010000702	HHIP (ENSUPAG00010000675)	ANAPC10 (ENSUPAG00010000613)	ABCE1 (ENSUPAG00010000589)	OTUD4 (ENSUPAG00010000528)	ENSUPAG00010000524	SMAD1 (ENSUPAG00010000470)	MMAA (ENSUPAG00010000442)	ZNF827 (ENSUPAG00010000383)	LSM6 (ENSUPAG00010000353)	REELD1 (ENSUPAG00010000334)	SLC10A7 (ENSUPAG00010000172)
Squirrel	MODERN SPECIES	135	RAB33B (ENSSTOG00000027511)	SETD7 (ENSSTOG00000004420)	MGST2 (ENSSTOG00000004437)	MAML3 (ENSSTOG00000004454)	ENSSTOG00000028529 #10	CLGN (ENSSTOG00000003055) #11	MGAT4D (ENSSTOG00000030895) #12	ELMOD2 (ENSSTOG00000022401) #13	UCP1 (ENSSTOG00000003104) #14	TBC1D9 (ENSSTOG00000001453) #15	RNF150 (ENSSTOG00000029908) #16	ZNF330 (ENSSTOG00000002498) #17	IL15 (ENSSTOG00000005776)	INPP4B (ENSSTOG00000005582) #19	USP38 (ENSSTOG00000025902) #21	GAB1 (ENSSTOG00000027891) #22	SMARCA5 (ENSSTOG00000010683)	FREM3 (ENSSTOG00000026754)	HHIP (ENSSTOG00000006708)	ENSSTOG00000022563	ANAPC10 (ENSSTOG00000007739)	ABCE1 (ENSSTOG00000004621)	OTUD4 (ENSSTOG00000004649)	SMAD1 (ENSSTOG00000010836)	MMAA (ENSSTOG00000010843)	ZNF827 (ENSSTOG00000007761)	LSM6 (ENSSTOG00000002678)	ENSSTOG00000030757	SLC10A7 (ENSSTOG00000023850)	POU4F2 (ENSSTOG00000021113)	TTC29 (ENSSTOG00000003372)
Alpin marmot	MODERN SPECIES	14					MGAT4D (ENSMMMG00000000565) #12	ELMOD2 (ENSMMMG00000000593) #13	UCP1 (ENSMMMG00000000628) #14	TBC1D9 (ENSMMMG00000000662) #15	RNF150 (ENSMMMG00000000771) #16	ZNF330 (ENSMMMG00000000807) #17	IL15 (ENSMMMG00000000844)	INPP4B (ENSMMMG00000000910) #19	ENSMMMG00000001088	ENSMMMG00000001108	USP38 (ENSMMMG00000001127) #21	GAB1 (ENSMMMG00000001157) #22	ENSMMMG00000001200	SMARCA5 (ENSMMMG00000001227)	FREM3 (ENSMMMG00000001322)	ENSMMMG00000001356	HHIP (ENSMMMG00000001370)	ANAPC10 (ENSMMMG00000001410)	ABCE1 (ENSMMMG00000001426)	OTUD4 (ENSMMMG00000001476)	SMAD1 (ENSMMMG00000001530)	MMAA (ENSMMMG00000001552)	ZNF827 (ENSMMMG00000001587)	LSM6 (ENSMMMG00000001638)	REELD1 (ENSMMMG00000001660)	SLC10A7 (ENSMMMG00000001688)	ENSMMMG00000001799
Eurasian red squirrel	MODERN SPECIES	18	NAA15 (ENSSVLG00005007200)	RAB33B (ENSSVLG00005007228)	SETD7 (ENSSVLG00005007262)	MAML3 (ENSSVLG00005007329)	SCOC (ENSSVLG00005007378) #10	CLGN (ENSSVLG00005007446) #11	MGAT4D (ENSSVLG00005007541) #12	ELMOD2 (ENSSVLG00005007698) #13	UCP1 (ENSSVLG00005007755) #14	TBC1D9 (ENSSVLG00005007825) #15	RNF150 (ENSSVLG00005007968) #16	ZNF330 (ENSSVLG00005008101) #17	IL15 (ENSSVLG00005008140)	INPP4B (ENSSVLG00005008272) #19	USP38 (ENSSVLG00005008534) #21	GAB1 (ENSSVLG00005008645) #22	SMARCA5 (ENSSVLG00005008713)	FREM3 (ENSSVLG00005008764)	ENSSVLG00005008869	HHIP (ENSSVLG00005009063)	ANAPC10 (ENSSVLG00005009144)	ENSSVLG00005009213	ENSSVLG00005009329	ENSSVLG00005009597	ENSSVLG00005009634	MMAA (ENSSVLG00005009664)	C4orf51 (ENSSVLG00005009715)	ZNF827 (ENSSVLG00005009794)	LSM6 (ENSSVLG00005009971)	REELD1 (ENSSVLG00005010007)	SLC10A7 (ENSSVLG00005010105)