Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000157262 #22
Euteleostomi	ANCESTRAL SPECIES	9	ENSGT00940000154527.b	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00390000012850	ENSGT00390000008296.b.a.b	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448
Actinopterygii	ANCESTRAL SPECIES	14	ENSGT00940000157569	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00390000012850	ENSGT00390000008296.b.a.b	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000156378.a.b	ENSGT00940000156378.a.a	ENSGT00390000014429.a	ENSGT00390000011228.b.a	ENSGT00950000183004.a.a.b
Neopterygii	DUPLICATION
Neopterygii	DUPLICATION
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000157262.m.b #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157262.m.b #22
Acanthomorphata	ANCESTRAL SPECIES	3	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	2	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Percomorphaceae	ANCESTRAL SPECIES	7	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Percomorphaceae_B	ANCESTRAL SPECIES	6	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Ovalentaria	ANCESTRAL SPECIES	6	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Ovalentaria_B	ANCESTRAL SPECIES	2	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Cichlidae	ANCESTRAL SPECIES		ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	5	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	18	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Haplochromini	ANCESTRAL SPECIES	20	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00940000182562	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36
Burton s mouthbrooder	MODERN SPECIES	527															ENSHBUG00000000657 #21	DUSP7 (ENSHBUG00000021408) #22	ENSHBUG00000021429 #23	slc6a1a (ENSHBUG00000021465) #24	VGLL4 (ENSHBUG00000021482) #25	syn2a (ENSHBUG00000021521) #26	raf1a (ENSHBUG00000021557) #27	cnbpa (ENSHBUG00000021569) #28	ENSHBUG00000021578 #30	zgc:77375 (ENSHBUG00000021581) #29	ENSHBUG00000021597	IQSEC1 (ENSHBUG00000021634) #31	NUP210 (ENSHBUG00000021863) #32	FBLN2 (ENSHBUG00000000678) #33	ENSHBUG00000021914 #34	WNT7A (ENSHBUG00000021931) #35	zgc:171857 (ENSHBUG00000021967) #36
Haplochromini_A	ANCESTRAL SPECIES	17	ENSGT00940000161930	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00940000182562	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36
P. nyererei	MODERN SPECIES	531															ENSPNYG00000004374 #21	DUSP7 (ENSPNYG00000004852) #22	ENSPNYG00000004864 #23	slc6a1a (ENSPNYG00000004881) #24	VGLL4 (ENSPNYG00000004913) #25	syn2a (ENSPNYG00000004934) #26	raf1a (ENSPNYG00000004978) #27	cnbpa (ENSPNYG00000005020) #28	zgc:77375 (ENSPNYG00000005031) #29	ENSPNYG00000005038 #30	IQSEC1 (ENSPNYG00000005048) #31	ENSPNYG00000005083	NUP210 (ENSPNYG00000005109) #32	FBLN2 (ENSPNYG00000005214) #33	ENSPNYG00000005234 #34	WNT7A (ENSPNYG00000005254) #35	zgc:171857 (ENSPNYG00000005269) #36
Haplochromini_B	ANCESTRAL SPECIES	14	ENSGT00940000154897.q	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db.m #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Zebra mbuna	MODERN SPECIES	1103	col9a3 (ENSMZEG00005026013)	ogfr (ENSMZEG00005026010) #7	kcnk15 (ENSMZEG00005026009) #8	CDH4 (ENSMZEG00005026005) #9	TAF4 (ENSMZEG00005026003) #10	LSM14B (ENSMZEG00005026001) #11	SS18L1 (ENSMZEG00005025998) #12	MTG2 (ENSMZEG00005025997) #13	ENSMZEG00005025993 #15	ENSMZEG00005025992 #16	ENSMZEG00005025990 #17	irf10 (ENSMZEG00005025986) #18	bmp7b (ENSMZEG00005025985) #19	spo11 (ENSMZEG00005025972) #20	ENSMZEG00005025936 #21	DUSP7 (ENSMZEG00005025931) #22	ENSMZEG00005025930 #23	slc6a1a (ENSMZEG00005025927) #24	VGLL4 (ENSMZEG00005025925) #25	syn2a (ENSMZEG00005025923) #26	raf1a (ENSMZEG00005025919) #27	cnbpa (ENSMZEG00005025913) #28	zgc:77375 (ENSMZEG00005025909) #29	ENSMZEG00005025906 #30	IQSEC1 (ENSMZEG00005025901) #31	NUP210 (ENSMZEG00005025890) #32	FBLN2 (ENSMZEG00005025888) #33	WNT7A (ENSMZEG00005025887) #35	zgc:171857 (ENSMZEG00005025886) #36	ENSMZEG00005025883 #37	BICD2 (ENSMZEG00005025878)
Lyretail cichlid	MODERN SPECIES	334	prkcbp1l (ENSNBRG00000022618)	ENSNBRG00000022599	col9a3 (ENSNBRG00000022551)	ogfr (ENSNBRG00000022529) #7	kcnk15 (ENSNBRG00000022515) #8	CDH4 (ENSNBRG00000022425) #9	TAF4 (ENSNBRG00000022380) #10	ENSNBRG00000022370 #11	ENSNBRG00000022365 #12	MTG2 (ENSNBRG00000022342) #13	ENSNBRG00000022326 #15	irf10 (ENSNBRG00000022314) #18	bmp7b (ENSNBRG00000022300) #19	spo11 (ENSNBRG00000022278) #20	ENSNBRG00000022260 #21	DUSP7 (ENSNBRG00000022256) #22	ENSNBRG00000022240 #23	slc6a1a (ENSNBRG00000022219) #24	VGLL4 (ENSNBRG00000022196) #25	syn2a (ENSNBRG00000022172) #26	raf1a (ENSNBRG00000022128) #27	cnbpa (ENSNBRG00000022113) #28	zgc:77375 (ENSNBRG00000022074) #29	ENSNBRG00000022062 #30	IQSEC1 (ENSNBRG00000022045) #31	NUP210 (ENSNBRG00000021969) #32	FBLN2 (ENSNBRG00000021897) #33	WNT7A (ENSNBRG00000021879) #35	zgc:171857 (ENSNBRG00000021856) #36	ENSNBRG00000021804 #37	BICD2 (ENSNBRG00000021765)
Nile tilapia	MODERN SPECIES	12	col9a3 (ENSONIG00000017095)	ogfr (ENSONIG00000017108) #7	kcnk15 (ENSONIG00000029925) #8	CDH4 (ENSONIG00000017111) #9	TAF4 (ENSONIG00000017122) #10	lsm14b (ENSONIG00000037640) #11	MTG2 (ENSONIG00000017130) #13	ENSONIG00000041254 #14	ENSONIG00000038637 #14	ENSONIG00000017132 #15	ENSONIG00000017145 #16	ENSONIG00000017146 #15	ENSONIG00000035271 #17	irf10 (ENSONIG00000017148) #18	bmp7b (ENSONIG00000017150) #19	DUSP7 (ENSONIG00000017157) #22	spo11 (ENSONIG00000017154) #20	ENSONIG00000040172 #21	ENSONIG00000017159 #23	slc6a1a (ENSONIG00000017160) #24	syn2a (ENSONIG00000017168) #26	VGLL4 (ENSONIG00000017166) #25	raf1a (ENSONIG00000017170) #27	cnbpa (ENSONIG00000040402) #28	zgc:77375 (ENSONIG00000017175) #29	ENSONIG00000021140 #30	IQSEC1 (ENSONIG00000042189) #31	NUP210 (ENSONIG00000017176) #32	FBLN2 (ENSONIG00000017187) #33	ENSONIG00000017189 #34	WNT7A (ENSONIG00000017190) #35
Midas cichlid	MODERN SPECIES	732			CDH4 (ENSACIG00000002869) #9	TAF4 (ENSACIG00000003098) #10	ENSACIG00000003134 #11	LSM14B (ENSACIG00000003147) #11	ENSACIG00000003167 #12	MTG2 (ENSACIG00000003178) #13	ENSACIG00000003197 #15	ENSACIG00000003220 #16	irf10 (ENSACIG00000003233) #18	bmp7b (ENSACIG00000003253) #19	ENSACIG00000003270	spo11 (ENSACIG00000003282) #20	ENSACIG00000003311 #21	DUSP7 (ENSACIG00000003348) #22	ENSACIG00000003407 #23	slc6a1a (ENSACIG00000003423) #24	VGLL4 (ENSACIG00000003459) #25	syn2a (ENSACIG00000003473) #26	raf1a (ENSACIG00000003513) #27	cnbpa (ENSACIG00000003540) #28	zgc:77375 (ENSACIG00000003651) #29	ENSACIG00000003675 #30	IQSEC1 (ENSACIG00000003682) #31	NUP210 (ENSACIG00000003714) #32	FBLN2 (ENSACIG00000003825) #33	ENSACIG00000003863 #34	WNT7A (ENSACIG00000003878) #35	zgc:171857 (ENSACIG00000003897) #36	ENSACIG00000003923 #37
Pomacentridae	ANCESTRAL SPECIES	2	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Pomacentridae_A	ANCESTRAL SPECIES	59	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Amphiprion	ANCESTRAL SPECIES	77	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Atherinomorphae	ANCESTRAL SPECIES	3	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Cyprinodontiformes	ANCESTRAL SPECIES	4	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Cyprinodontoidei	ANCESTRAL SPECIES	3	ENSGT00940000160902.c.b #8	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d.d #14	ENSGT00940000155218.A.d.c #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Poeciliinae	ANCESTRAL SPECIES	2	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000161589.i #15	ENSGT00940000155218.A.d.d #14	ENSGT00940000155218.A.d.c #14	ENSGT00940000161589.j #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Poecilia	ANCESTRAL SPECIES	14	ENSGT00990000209425	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000161589.i #15	ENSGT00940000155218.A.d.d #14	ENSGT00940000155218.A.d.c #14	ENSGT00940000161589.j #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
NAME_6	ANCESTRAL SPECIES	42	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000161589.i #15	ENSGT00940000155218.A.d.d #14	ENSGT00940000155218.A.d.c #14	ENSGT00940000161589.j #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813.i #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Sheepshead minnow	MODERN SPECIES	320			CDH4 (ENSCVAG00000012370) #9	TAF4 (ENSCVAG00000012402) #10	ENSCVAG00000012411 #11	ENSCVAG00000012433 #11	ENSCVAG00000012444 #12	SS18L1 (ENSCVAG00000012450) #12	MTG2 (ENSCVAG00000012457) #13	ENSCVAG00000012464 #15	ENSCVAG00000000663 #16	ENSCVAG00000012483 #17	irf10 (ENSCVAG00000012497) #18	bmp7b (ENSCVAG00000012517) #19	spo11 (ENSCVAG00000012572) #20	DUSP7 (ENSCVAG00000012607) #22	ENSCVAG00000012631 #23	slc6a1a (ENSCVAG00000012675) #24	VGLL4 (ENSCVAG00000012712) #25	syn2a (ENSCVAG00000012786) #26	raf1a (ENSCVAG00000012816) #27	cnbpa (ENSCVAG00000012825) #28	zgc:77375 (ENSCVAG00000012859) #29	ENSCVAG00000012863 #30	IQSEC1 (ENSCVAG00000012975) #31	NUP210 (ENSCVAG00000013103) #32	FBLN2 (ENSCVAG00000013122) #33	ENSCVAG00000013127 #34	WNT7A (ENSCVAG00000013142) #35	zgc:171857 (ENSCVAG00000013150) #36	ENSCVAG00000013221 #37
Indian medaka	MODERN SPECIES	23	kcnk15 (ENSOMEG00000007122) #8	CDH4 (ENSOMEG00000007178) #9	TAF4 (ENSOMEG00000007222) #10	ENSOMEG00000007241 #11	ENSOMEG00000000171 #11	MTG2 (ENSOMEG00000007270) #13	ENSOMEG00000007287 #14	ENSOMEG00000007305 #15	ENSOMEG00000007324 #15	ENSOMEG00000007403 #15	ENSOMEG00000007441 #16	ENSOMEG00000007446 #17	irf10 (ENSOMEG00000007467) #18	bmp7b (ENSOMEG00000007490) #19	spo11 (ENSOMEG00000007582) #20	DUSP7 (ENSOMEG00000007613) #22	ENSOMEG00000007652 #23	slc6a1a (ENSOMEG00000007745) #24	VGLL4 (ENSOMEG00000007778) #25	syn2a (ENSOMEG00000007816) #26	raf1a (ENSOMEG00000007930) #27	ENSOMEG00000007985	zgc:77375 (ENSOMEG00000008041) #29	ENSOMEG00000008061 #30	IQSEC1 (ENSOMEG00000008146) #31	NUP210 (ENSOMEG00000008219) #32	FBLN2 (ENSOMEG00000008281) #33	WNT7A (ENSOMEG00000008310) #35	zgc:171857 (ENSOMEG00000008331) #36	ENSOMEG00000008380 #37	BICD2 (ENSOMEG00000008421)
Javanese ricefish	MODERN SPECIES	21	ENSOJAG00000013579	ENSOJAG00000013573	CDH4 (ENSOJAG00000013014) #9	TAF4 (ENSOJAG00000012903) #10	lsm14b (ENSOJAG00000012894) #11	MTG2 (ENSOJAG00000012886) #13	ENSOJAG00000012868 #14	ENSOJAG00000012822 #15	ENSOJAG00000012648 #15	ENSOJAG00000012635 #15	ENSOJAG00000012627 #16	ENSOJAG00000012623 #17	irf10 (ENSOJAG00000012617) #18	bmp7b (ENSOJAG00000012453) #19	spo11 (ENSOJAG00000012351) #20	DUSP7 (ENSOJAG00000012303) #22	ENSOJAG00000012274 #23	slc6a1a (ENSOJAG00000012121) #24	VGLL4 (ENSOJAG00000012101) #25	syn2a (ENSOJAG00000011897) #26	raf1a (ENSOJAG00000011473) #27	cnbpa (ENSOJAG00000011380) #28	zgc:77375 (ENSOJAG00000011339) #29	ENSOJAG00000011312 #30	IQSEC1 (ENSOJAG00000009867) #31	NUP210 (ENSOJAG00000009431) #32	FBLN2 (ENSOJAG00000009396) #33	WNT7A (ENSOJAG00000009382) #35	zgc:171857 (ENSOJAG00000009361) #36	ENSOJAG00000009289 #37	BICD2 (ENSOJAG00000008579)
Japanese Medaka HdrR	MODERN SPECIES	21	TAF4 (ENSORLG00000011854) #10	LSM14B (ENSORLG00000028353) #11	SS18L1 (ENSORLG00000011806) #12	MTG2 (ENSORLG00000011791) #13	ENSORLG00000011784 #14	ENSORLG00000011759 #15	ENSORLG00000022337 #15	ENSORLG00000028288	ENSORLG00000026260	ENSORLG00000024787 #15	ENSORLG00000023244 #16	ENSORLG00000025783 #17	irf10 (ENSORLG00000011745) #18	bmp7b (ENSORLG00000011720) #19	spo11 (ENSORLG00000011654) #20	ENSORLG00000011642 #22	ENSORLG00000029873	ENSORLG00000011624 #23	slc6a1a (ENSORLG00000011608) #24	ENSORLG00000011494 #25	syn2a (ENSORLG00000011479) #26	raf1a (ENSORLG00000011471) #27	cnbpa (ENSORLG00000011453) #28	zgc:77375 (ENSORLG00000011428) #29	ENSORLG00000011419 #30	IQSEC1 (ENSORLG00000011415) #31	NUP210 (ENSORLG00000011390) #32	FBLN2 (ENSORLG00000011304) #33	WNT7A (ENSORLG00000011261) #35	zgc:171857 (ENSORLG00000011233) #36	ENSORLG00000030368
Tetraodontidae	ANCESTRAL SPECIES	2	ENSGT00940000174854	ENSGT00940000161930	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Tetraodon	MODERN SPECIES	24	ENSTNIG00000000421	col9a3 (ENSTNIG00000012604)	ogfr (ENSTNIG00000012605) #7	kcnk15 (ENSTNIG00000012606) #8	CDH4 (ENSTNIG00000012607) #9	TAF4 (ENSTNIG00000012608) #10	lsm14b (ENSTNIG00000012609) #11	SS18L1 (ENSTNIG00000012610) #12	MTG2 (ENSTNIG00000012611) #13	ENSTNIG00000012612 #15	ENSTNIG00000000162 #16	irf10 (ENSTNIG00000012613) #18	bmp7b (ENSTNIG00000012614) #19	spo11 (ENSTNIG00000012615) #20	ENSTNIG00000012616 #21	DUSP7 (ENSTNIG00000012617) #22	ENSTNIG00000012618 #23	slc6a1a (ENSTNIG00000012619) #24	syn2a (ENSTNIG00000012620) #26	raf1a (ENSTNIG00000012621) #27	cnbpa (ENSTNIG00000017940) #28	zgc:77375 (ENSTNIG00000017939) #29	IQSEC1 (ENSTNIG00000017938) #31	NUP210 (ENSTNIG00000017937) #32	FBLN2 (ENSTNIG00000017936) #33	WNT7A (ENSTNIG00000017935) #35	zgc:171857 (ENSTNIG00000000393) #36	ENSTNIG00000017934 #37	BICD2 (ENSTNIG00000017933)	FGD3 (ENSTNIG00000017932)	ENSTNIG00000001362
Eupecaria_A	ANCESTRAL SPECIES	4	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Ballan wrasse	MODERN SPECIES	26	ENSLBEG00000008057	nr2c2 (ENSLBEG00000008028)	TAF4 (ENSLBEG00000007994) #10	ENSLBEG00000007971 #11	lsm14b (ENSLBEG00000007951) #11	ENSLBEG00000007935 #12	MTG2 (ENSLBEG00000007918) #13	ENSLBEG00000007883	ENSLBEG00000007774 #15	ENSLBEG00000007734 #16	ENSLBEG00000007715 #17	irf10 (ENSLBEG00000007684) #18	bmp7b (ENSLBEG00000007667) #19	spo11 (ENSLBEG00000007627) #20	ENSLBEG00000007571 #21	DUSP7 (ENSLBEG00000007544) #22	ENSLBEG00000007505 #23	slc6a1a (ENSLBEG00000007443) #24	VGLL4 (ENSLBEG00000007400) #25	syn2a (ENSLBEG00000007331) #26	raf1a (ENSLBEG00000007171) #27	ENSLBEG00000007132 #30	zgc:77375 (ENSLBEG00000007066) #29	IQSEC1 (ENSLBEG00000007008) #31	NUP210 (ENSLBEG00000006661) #32	FBLN2 (ENSLBEG00000006569) #33	WNT7A (ENSLBEG00000006524) #35	zgc:171857 (ENSLBEG00000006494) #36	ENSLBEG00000006398 #37	BICD2 (ENSLBEG00000006328)	FGD3 (ENSLBEG00000006231)
Eupecaria_C	ANCESTRAL SPECIES	5	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	15	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
European seabass	MODERN SPECIES	14	OGFR (ENSDLAG00005001310) #7	kcnk15 (ENSDLAG00005001321) #8	CDH4 (ENSDLAG00005001494) #9	TAF4 (ENSDLAG00005003568) #10	LSM14B (ENSDLAG00005003893) #11	SS18L1 (ENSDLAG00005003909) #12	MTG2 (ENSDLAG00005032440) #13	ENSDLAG00005003982 #14	ENSDLAG00005004017 #15	ENSDLAG00005004039 #16	ENSDLAG00005004048 #17	ENSDLAG00005004052 #18	ENSDLAG00005004070 #19	ENSDLAG00005004117 #20	ENSDLAG00005004136 #21	ENSDLAG00005026444 #22	ENSDLAG00005004200 #23	slc6a1a (ENSDLAG00005004349) #24	ENSDLAG00005028508 #25	syn2a (ENSDLAG00005004685) #26	raf1a (ENSDLAG00005004923) #27	cnbpa (ENSDLAG00005031817) #28	ENSDLAG00005005128 #29	ENSDLAG00005032793 #30	IQSEC1 (ENSDLAG00005005257) #31	ENSDLAG00005007677 #32	FBLN2 (ENSDLAG00005008121) #33	ENSDLAG00005030442	ENSDLAG00005028187 #35	zgc:171857 (ENSDLAG00005008532) #36	ENSDLAG00005008548 #37
Large yellow croaker	MODERN SPECIES	18	ENSLCRG00005006171	CDH4 (ENSLCRG00005002055) #9	TAF4 (ENSLCRG00005001886) #10	lsm14b (ENSLCRG00005001876) #11	SS18L1 (ENSLCRG00005001860) #12	MTG2 (ENSLCRG00005001847) #13	ENSLCRG00005001839	ENSLCRG00005001758 #14	ENSLCRG00005001718 #15	ENSLCRG00005001702 #16	ENSLCRG00005001688 #17	IRF10 (ENSLCRG00005001665) #18	bmp7b (ENSLCRG00005001589) #19	spo11 (ENSLCRG00005001447) #20	ENSLCRG00005007165 #21	DUSP7 (ENSLCRG00005007164) #22	ENSLCRG00005007163 #23	slc6a1a (ENSLCRG00005007120) #24	VGLL4 (ENSLCRG00005007117) #25	syn2a (ENSLCRG00005006644) #26	raf1a (ENSLCRG00005006549) #27	cnbpa (ENSLCRG00005006543) #28	zgc:77375 (ENSLCRG00005006542) #29	ENSLCRG00005006541 #30	IQSEC1 (ENSLCRG00005006530) #31	NUP210 (ENSLCRG00005006427) #32	FBLN2 (ENSLCRG00005006413) #33	ENSLCRG00005006411 #34	WNT7A (ENSLCRG00005006409) #35	zgc:171857 (ENSLCRG00005006407) #36	ENSLCRG00005006368 #37
Pike perch	MODERN SPECIES	31	col9a3 (ENSSLUG00000003549)	ogfr (ENSSLUG00000003543) #7	kcnk15 (ENSSLUG00000003516) #8	CDH4 (ENSSLUG00000003193) #9	TAF4 (ENSSLUG00000003116) #10	lsm14b (ENSSLUG00000003099) #11	ENSSLUG00000003090 #12	MTG2 (ENSSLUG00000003074) #13	ENSSLUG00000003044 #15	ENSSLUG00000003028 #16	ENSSLUG00000003021 #17	irf10 (ENSSLUG00000002990) #18	bmp7b (ENSSLUG00000002945) #19	spo11 (ENSSLUG00000002873) #20	ENSSLUG00000002852 #21	DUSP7 (ENSSLUG00000002848) #22	ENSSLUG00000002843 #23	slc6a1a (ENSSLUG00000002771) #24	VGLL4 (ENSSLUG00000002747) #25	syn2a (ENSSLUG00000002630) #26	raf1a (ENSSLUG00000002257) #27	cnbpa (ENSSLUG00000002192) #28	zgc:77375 (ENSSLUG00000002189) #29	ENSSLUG00000002185 #30	IQSEC1 (ENSSLUG00000002103) #31	NUP210 (ENSSLUG00000001909) #32	FBLN2 (ENSSLUG00000001744) #33	ENSSLUG00000001699 #34	WNT7A (ENSSLUG00000001695) #35	zgc:171857 (ENSSLUG00000001686) #36	ENSSLUG00000001665 #37
Channel bull blenny	MODERN SPECIES	21	col9a3 (ENSCGOG00000012696)	ogfr (ENSCGOG00000012700) #7	kcnk15 (ENSCGOG00000012702) #8	CDH4 (ENSCGOG00000012741) #9	TAF4 (ENSCGOG00000015172) #10	lsm14b (ENSCGOG00000015175) #11	SS18L1 (ENSCGOG00000015178) #12	MTG2 (ENSCGOG00000015183) #13	ENSCGOG00000015209 #15	ENSCGOG00000015211 #16	irf10 (ENSCGOG00000015215) #18	ENSCGOG00000015232 #17	bmp7b (ENSCGOG00000015238) #19	spo11 (ENSCGOG00000015307) #20	ENSCGOG00000015315 #21	DUSP7 (ENSCGOG00000015322) #22	ENSCGOG00000015327 #23	slc6a1a (ENSCGOG00000015410) #24	VGLL4 (ENSCGOG00000018227) #25	syn2a (ENSCGOG00000018244) #26	raf1a (ENSCGOG00000018805) #27	cnbpa (ENSCGOG00000019576) #28	zgc:77375 (ENSCGOG00000019580) #29	ENSCGOG00000019582 #30	IQSEC1 (ENSCGOG00000019586) #31	NUP210 (ENSCGOG00000019640) #32	FBLN2 (ENSCGOG00000020641) #33	ENSCGOG00000020645	WNT7A (ENSCGOG00000020647) #35	zgc:171857 (ENSCGOG00000020653) #36	ENSCGOG00000020661 #37
Cottioidei	ANCESTRAL SPECIES	2	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Lumpfish	MODERN SPECIES	22	ENSCLMG00005017254	ogfr (ENSCLMG00005017255) #7	kcnk15 (ENSCLMG00005017257) #8	ENSCLMG00005017258 #9	TAF4 (ENSCLMG00005017259) #10	LSM14B (ENSCLMG00005017294) #11	ENSCLMG00005017314 #12	MTG2 (ENSCLMG00005017318) #13	ENSCLMG00005017321 #14	ENSCLMG00005017324 #15	ENSCLMG00005017328 #17	irf10 (ENSCLMG00005017332) #18	bmp7b (ENSCLMG00005017337) #19	spo11 (ENSCLMG00005017339) #20	ENSCLMG00005017344 #21	DUSP7 (ENSCLMG00005017361) #22	ENSCLMG00005017362 #23	slc6a1a (ENSCLMG00005017364) #24	VGLL4 (ENSCLMG00005017367) #25	syn2a (ENSCLMG00005017371) #26	raf1a (ENSCLMG00005017410) #27	cnbpa (ENSCLMG00005018238) #28	zgc:77375 (ENSCLMG00005018239) #29	ENSCLMG00005018241 #30	IQSEC1 (ENSCLMG00005018246) #31	NUP210 (ENSCLMG00005018309) #32	ENSCLMG00005018977 #33	ENSCLMG00005018978	WNT7A (ENSCLMG00005018981) #35	zgc:171857 (ENSCLMG00005018983) #36	ENSCLMG00005018985 #37
Stickleback	MODERN SPECIES	512			CDH4 (ENSGACG00000015086) #9	TAF4 (ENSGACG00000015092) #10	lsm14b (ENSGACG00000015099) #11	SS18L1 (ENSGACG00000015102) #12	MTG2 (ENSGACG00000015104) #13	ENSGACG00000015110 #14	ENSGACG00000015114 #15	ENSGACG00000015119 #16	ENSGACG00000015121 #17	irf10 (ENSGACG00000015123) #18	bmp7b (ENSGACG00000015125) #19	spo11 (ENSGACG00000015129) #20	ENSGACG00000015138 #21	DUSP7 (ENSGACG00000015141) #22	ENSGACG00000015148 #23	ENSGACG00000015155	slc6a1a (ENSGACG00000015157) #24	VGLL4 (ENSGACG00000015170) #25	kcnk15 (ENSGACG00000015173) #8	ogfr (ENSGACG00000015176) #7	col9a3 (ENSGACG00000015178)	ENSGACG00000015205	prkcbp1l (ENSGACG00000015209)	zgc:113278 (ENSGACG00000015220)	ENSGACG00000015221	rbm38 (ENSGACG00000015224)	mipb (ENSGACG00000015226)	baz2a (ENSGACG00000015232)	ptges3b (ENSGACG00000015239)
Percomorphaceae_D	ANCESTRAL SPECIES	4	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Anabantaria	ANCESTRAL SPECIES	3	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Zig-zag eel	MODERN SPECIES	21	kcnk15 (ENSMAMG00000024127) #8	ENSMAMG00000028231	CDH4 (ENSMAMG00000024126) #9	TAF4 (ENSMAMG00000024125) #10	LSM14B (ENSMAMG00000024124) #11	ENSMAMG00000024685 #12	MTG2 (ENSMAMG00000024122) #13	ENSMAMG00000024121 #14	ENSMAMG00000024120 #15	ENSMAMG00000024118 #16	ENSMAMG00000024117 #17	ENSMAMG00000024116 #18	ENSMAMG00000024115 #19	ENSMAMG00000024114 #20	ENSMAMG00000024113 #21	ENSMAMG00000024112 #22	ENSMAMG00000024111 #23	slc6a1a (ENSMAMG00000024110) #24	ENSMAMG00000024286 #25	syn2a (ENSMAMG00000024108) #26	raf1a (ENSMAMG00000024107) #27	cnbpa (ENSMAMG00000024106) #28	ENSMAMG00000024105 #29	ENSMAMG00000024104 #30	IQSEC1 (ENSMAMG00000024103) #31	NUP210 (ENSMAMG00000024102) #32	FBLN2 (ENSMAMG00000024101) #33	WNT7A (ENSMAMG00000026358) #35	zgc:171857 (ENSMAMG00000024099) #36	ENSMAMG00000024098 #37	ENSMAMG00000024097
Anabantoidei	ANCESTRAL SPECIES	2	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00950000183116.b.a.a.b.a.a.b #34	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Siamese fighting fish	MODERN SPECIES	18	ENSBSLG00000022740	slc38a5b (ENSBSLG00000022751)	ccdc22 (ENSBSLG00000022838)	tbc1d25 (ENSBSLG00000022911)	ndufb11 (ENSBSLG00000008300)	rtel1 (ENSBSLG00000008476)	icmt (ENSBSLG00000010111)	ENSBSLG00000010122 #15	ENSBSLG00000010146	ENSBSLG00000010151 #16	ENSBSLG00000010585 #17	irf10 (ENSBSLG00000010614) #18	bmp7b (ENSBSLG00000010648) #19	ENSBSLG00000010727	spo11 (ENSBSLG00000010764) #20	DUSP7 (ENSBSLG00000010940) #22	ENSBSLG00000010961 #23	slc6a1a (ENSBSLG00000011021) #24	VGLL4 (ENSBSLG00000011229) #25	ENSBSLG00000011233	syn2a (ENSBSLG00000011244) #26	raf1a (ENSBSLG00000011398) #27	cnbpa (ENSBSLG00000011418) #28	zgc:77375 (ENSBSLG00000011428) #29	ENSBSLG00000011583 #30	IQSEC1 (ENSBSLG00000011801) #31	NUP210 (ENSBSLG00000012441) #32	FBLN2 (ENSBSLG00000012590) #33	WNT7A (ENSBSLG00000013059) #35	zgc:171857 (ENSBSLG00000013102) #36	ENSBSLG00000013265 #37
Climbing perch	MODERN SPECIES	20	ENSATEG00000016071 #7	kcnk15 (ENSATEG00000028850) #8	CDH4 (ENSATEG00000015956) #9	TAF4 (ENSATEG00000015915) #10	LSM14B (ENSATEG00000015895) #11	ENSATEG00000015876 #12	MTG2 (ENSATEG00000015862) #13	ENSATEG00000015845 #14	ENSATEG00000015788 #15	ENSATEG00000026513 #16	ENSATEG00000015767 #17	ENSATEG00000015753 #18	ENSATEG00000015733 #19	ENSATEG00000015710 #20	ENSATEG00000015672 #21	ENSATEG00000015660 #22	ENSATEG00000027776 #23	slc6a1a (ENSATEG00000015611) #24	ENSATEG00000015602 #25	syn2a (ENSATEG00000015569) #26	raf1a (ENSATEG00000015487) #27	cnbpa (ENSATEG00000015473) #28	ENSATEG00000029003 #29	ENSATEG00000015459 #30	IQSEC1 (ENSATEG00000015332) #31	ENSATEG00000015201 #32	FBLN2 (ENSATEG00000015165) #33	ENSATEG00000025400 #34	ENSATEG00000015120 #35	zgc:171857 (ENSATEG00000015110) #36	ENSATEG00000015065 #37
Carangaria	ANCESTRAL SPECIES	2	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000166256.a	ENSGT00940000166256.b	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Carangaria_A	ANCESTRAL SPECIES	1	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Seriola	ANCESTRAL SPECIES	8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000166256.a	ENSGT00940000166256.b	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000163520.A.a.a.a.a.a.a.h	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37
Greater amberjack	MODERN SPECIES	16	ogfr (ENSSDUG00000022730) #7	kcnk15 (ENSSDUG00000022731) #8	CDH4 (ENSSDUG00000022738) #9	TAF4 (ENSSDUG00000022762) #10	lsm14b (ENSSDUG00000022770) #11	ENSSDUG00000022774 #12	MTG2 (ENSSDUG00000022779) #13	ENSSDUG00000022785 #17	ENSSDUG00000022787 #14	ENSSDUG00000022793 #15	ENSSDUG00000022805 #16	irf10 (ENSSDUG00000022811) #18	bmp7b (ENSSDUG00000022821) #19	spo11 (ENSSDUG00000022830) #20	ENSSDUG00000022838 #21	DUSP7 (ENSSDUG00000000089) #22	ENSSDUG00000000111 #23	slc6a1a (ENSSDUG00000000159) #24	VGLL4 (ENSSDUG00000000240) #25	syn2a (ENSSDUG00000000252) #26	raf1a (ENSSDUG00000000302) #27	cnbpa (ENSSDUG00000000383) #28	zgc:77375 (ENSSDUG00000000389) #29	ENSSDUG00000000421 #30	IQSEC1 (ENSSDUG00000000442) #31	NUP210 (ENSSDUG00000000512) #32	FBLN2 (ENSSDUG00000000680) #33	ENSSDUG00000000685	WNT7A (ENSSDUG00000000696) #35	zgc:171857 (ENSSDUG00000000727) #36	ENSSDUG00000000747 #37
Yellowtail amberjack	MODERN SPECIES	3185						ENSSLDG00000012686 #11	SS18L1 (ENSSLDG00000012675) #12	MTG2 (ENSSLDG00000012653) #13	ENSSLDG00000012547 #15	ENSSLDG00000012515 #16	ENSSLDG00000012498 #17	irf10 (ENSSLDG00000012207) #18	bmp7b (ENSSLDG00000012142) #19	spo11 (ENSSLDG00000012075) #20	ENSSLDG00000011995 #21	DUSP7 (ENSSLDG00000011957) #22	ENSSLDG00000011935 #23	slc6a1a (ENSSLDG00000011897) #24	VGLL4 (ENSSLDG00000011880) #25	syn2a (ENSSLDG00000011845) #26	raf1a (ENSSLDG00000011758) #27	cnbpa (ENSSLDG00000011731) #28	zgc:77375 (ENSSLDG00000011655) #29	ENSSLDG00000011630 #30	IQSEC1 (ENSSLDG00000011510) #31	NUP210 (ENSSLDG00000011338) #32	FBLN2 (ENSSLDG00000011147) #33	ENSSLDG00000011108	WNT7A (ENSSLDG00000011092) #35	zgc:171857 (ENSSLDG00000011065) #36	ENSSLDG00000011040 #37
Barramundi perch	MODERN SPECIES	252			CDH4 (ENSLCAG00010019669) #9	TAF4 (ENSLCAG00010019602) #10	lsm14b (ENSLCAG00010019596) #11	SS18L1 (ENSLCAG00010019593) #12	MTG2 (ENSLCAG00010019585) #13	ENSLCAG00010019574 #14	ENSLCAG00010019564 #15	ENSLCAG00010019563 #16	ENSLCAG00010019562 #17	irf10 (ENSLCAG00010019557) #18	bmp7b (ENSLCAG00010019543) #19	spo11 (ENSLCAG00010019536) #20	ENSLCAG00010019529 #21	DUSP7 (ENSLCAG00010019521) #22	ENSLCAG00010019519 #23	slc6a1a (ENSLCAG00010019476) #24	VGLL4 (ENSLCAG00010019468) #25	syn2a (ENSLCAG00010019465) #26	raf1a (ENSLCAG00010019431) #27	cnbpa (ENSLCAG00010019408) #28	zgc:77375 (ENSLCAG00010019404) #29	ENSLCAG00010019403 #30	IQSEC1 (ENSLCAG00010018949) #31	NUP210 (ENSLCAG00010018685) #32	FBLN2 (ENSLCAG00010018624) #33	WNT7A (ENSLCAG00010018616) #35	zgc:171857 (ENSLCAG00010018608) #36	ENSLCAG00010018598 #37	BICD2 (ENSLCAG00010018593)
Pleuronectoidei	ANCESTRAL SPECIES	38	ENSGT00940000161930	ENSGT00390000018730.A.e #7	ENSGT00940000160902.c.b #8	ENSGT00940000158073.a #9	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000154471.a.b.a.a.b.b
Turbot	MODERN SPECIES	2	ENSSMAG00000024970	CDH4 (ENSSMAG00000000251) #9	TAF4 (ENSSMAG00000000140) #10	LSM14B (ENSSMAG00000000135) #11	ENSSMAG00000000131 #12	MTG2 (ENSSMAG00000000126) #13	ENSSMAG00000038052 #15	ENSSMAG00000028209 #15	ENSSMAG00000031631 #16	ENSSMAG00000025353 #17	ENSSMAG00000020987 #18	ENSSMAG00000020985 #19	ENSSMAG00000020963 #20	ENSSMAG00000020952 #21	ENSSMAG00000032794	ENSSMAG00000020951 #22	ENSSMAG00000020950 #23	slc6a1a (ENSSMAG00000020940) #24	ENSSMAG00000020938 #25	syn2a (ENSSMAG00000020924) #26	raf1a (ENSSMAG00000020915) #27	ENSSMAG00000020914	ENSSMAG00000028219	ENSSMAG00000020906	ENSSMAG00000020901	ENSSMAG00000032462	ENSSMAG00000020898	nemp1 (ENSSMAG00000020897)	cd63 (ENSSMAG00000031724)	letmd1 (ENSSMAG00000020891)	zgc:56699 (ENSSMAG00000020886)
Tongue sole	MODERN SPECIES	1	ENSCSEG00000020869	col9a3 (ENSCSEG00000020861)	ogfr (ENSCSEG00000020856) #7	kcnk15 (ENSCSEG00000020855) #8	CDH4 (ENSCSEG00000020671) #9	lsm14b (ENSCSEG00000020669) #11	ENSCSEG00000020668 #12	MTG2 (ENSCSEG00000020663) #13	ENSCSEG00000020657 #15	ENSCSEG00000020656 #16	ENSCSEG00000020655 #17	irf10 (ENSCSEG00000020654) #18	bmp7b (ENSCSEG00000020653) #19	spo11 (ENSCSEG00000020633) #20	ENSCSEG00000020627 #21	DUSP7 (ENSCSEG00000020626) #22	ythdf1 (ENSCSEG00000020623)	ENSCSEG00000020619	si:dkey-70p6.1 (ENSCSEG00000020617)	UCKL1 (ENSCSEG00000020614)	ENSCSEG00000020612	opn7d (ENSCSEG00000020609)	samd10a (ENSCSEG00000020608)	rad21l1 (ENSCSEG00000020607)	SNPH (ENSCSEG00000020605)	ENSCSEG00000020603	mfsd2al2 (ENSCSEG00000020601)	ENSCSEG00000020598	PRICKLE3 (ENSCSEG00000020597)	plp2b (ENSCSEG00000020594)	sypb (ENSCSEG00000020583)
Tiger tail seahorse	MODERN SPECIES	487	ENSHCOG00000003065	ENSHCOG00000003082	CTDSP1 (ENSHCOG00000003099)	obsl1a (ENSHCOG00000003139)	ENSHCOG00000003146	ENSHCOG00000003177	ATP1A1 (ENSHCOG00000003216)	ENSHCOG00000003239	ccdc28a (ENSHCOG00000003252)	ENSHCOG00000003278	FILIP1L (ENSHCOG00000000101)	ENSHCOG00000003317	jagn1b (ENSHCOG00000003324)	ENSHCOG00000003331	mrps9 (ENSHCOG00000003338)	DUSP7 (ENSHCOG00000003353) #22	ENSHCOG00000003365 #23	slc6a1a (ENSHCOG00000003383) #24	VGLL4 (ENSHCOG00000003393) #25	syn2a (ENSHCOG00000003422) #26	raf1a (ENSHCOG00000003447) #27	cnbpa (ENSHCOG00000003457) #28	zgc:77375 (ENSHCOG00000003467) #29	ENSHCOG00000003476 #30	IQSEC1 (ENSHCOG00000003556) #31	ENSHCOG00000003595 #32
Pinecone sodierfish	MODERN SPECIES	21	ENSMMDG00005018691	ENSMMDG00005018684	ogfr (ENSMMDG00005018682) #7	kcnk15 (ENSMMDG00005018670) #8	ENSMMDG00005018668	CDH4 (ENSMMDG00005018665) #9	lsm14b (ENSMMDG00005018657) #11	ENSMMDG00005018654 #12	MTG2 (ENSMMDG00005018652) #13	ENSMMDG00005018651	ENSMMDG00005018649 #15	irf10 (ENSMMDG00005018643) #18	bmp7b (ENSMMDG00005018641) #19	spo11 (ENSMMDG00005018630) #20	ENSMMDG00005018624 #21	DUSP7 (ENSMMDG00005018620) #22	ENSMMDG00005018616 #23	slc6a1a (ENSMMDG00005018503) #24	VGLL4 (ENSMMDG00005018494) #25	syn2a (ENSMMDG00005018489) #26	raf1a (ENSMMDG00005018107) #27	cnbpa (ENSMMDG00005018104) #28	zgc:77375 (ENSMMDG00005018103) #29	ENSMMDG00005018101 #30	IQSEC1 (ENSMMDG00005018090) #31	NUP210 (ENSMMDG00005017833) #32	FBLN2 (ENSMMDG00005016827) #33	WNT7A (ENSMMDG00005016795) #35	zgc:171857 (ENSMMDG00005016792) #36	ENSMMDG00005016785 #37	adtrp1 (ENSMMDG00005016780)
Cod	MODERN SPECIES		ENSGMOG00000013870 #7	ENSGMOG00000036566	kcnk15 (ENSGMOG00000036247) #8	CDH4 (ENSGMOG00000002481) #9	TAF4 (ENSGMOG00000002528) #10	ENSGMOG00000027726 #11	MTG2 (ENSGMOG00000002601) #13	ENSGMOG00000002622 #14	ENSGMOG00000002661 #15	ENSGMOG00000024498 #16	ENSGMOG00000036169 #17	ENSGMOG00000002737 #18	ENSGMOG00000002761 #19	ENSGMOG00000002782 #20	ENSGMOG00000002805 #21	ENSGMOG00000002844 #22	ENSGMOG00000002857 #23	slc6a1a (ENSGMOG00000002873) #24	ENSGMOG00000023206 #25	syn2a (ENSGMOG00000016959) #26	raf1a (ENSGMOG00000016976) #27	cnbpa (ENSGMOG00000017012) #28	ENSGMOG00000017018 #29	ENSGMOG00000026511 #30	IQSEC1 (ENSGMOG00000017042) #31	NUP210 (ENSGMOG00000017069) #32	FBLN2 (ENSGMOG00000017143) #33	WNT7A (ENSGMOG00000031507) #35	zgc:171857 (ENSGMOG00000017244) #36	ENSGMOG00000017264 #37	adtrp1 (ENSGMOG00000033011)
Protacanthopterygii	ANCESTRAL SPECIES	37	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000156010.db #11	ENSGT00940000159695	ENSGT00940000159853 #12	ENSGT00940000157379 #13	ENSGT00740000116961	ENSGT00940000155218.A.d #14	ENSGT00940000161589 #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a #17	ENSGT00940000163813 #18	ENSGT00940000156490.b.a #19	ENSGT00390000001787 #20	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000158273	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00940000164112.a #29	ENSGT00940000161980	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	50	ENSGT00940000161930	ENSGT00390000018730.A.e.c #7	ENSGT00940000160902.c.b.b #8	ENSGT00940000158073.a.a #9	ENSGT00390000011620.a.a.b.f.a #10	ENSGT00940000160354.j.b	ENSGT00940000159853.c #12	ENSGT00940000157379.l.a #13	ENSGT00740000116961.a	ENSGT00940000155218.A.d #14	ENSGT00940000161589.q #15	ENSGT00390000005939.a.b.a.a #17	ENSGT00940000163813.k #18	ENSGT00940000156490.b.a.c #19	ENSGT00990000211061	ENSGT00940000157262.m.b.a #22	ENSGT00940000153541.A.d #23	ENSGT00940000156027.a.e #24	ENSGT00390000003282.B.e.a #25	ENSGT00940000156062.n.c #26	ENSGT00940000158273.m.a	ENSGT00940000156084.a.a #27	ENSGT00950000183041.A.a.b.a #28	ENSGT00940000164112.a.k.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a.c #31	ENSGT00390000009491.d.o #32	ENSGT00940000156047.b.c #33	ENSGT00940000158523.c.a.d #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a.c #37
Huchen	MODERN SPECIES	40											ENSHHUG00000026764 #17	irf10 (ENSHHUG00000026748) #18	bmp7b (ENSHHUG00000026697) #19	ENSHHUG00000026690	ENSHHUG00000026685 #21	DUSP7 (ENSHHUG00000026672) #22	ENSHHUG00000026660 #23	slc6a1a (ENSHHUG00000026636) #24	VGLL4 (ENSHHUG00000026623) #25	syn2a (ENSHHUG00000026539) #26	ENSHHUG00000026529	RAF1 (ENSHHUG00000026305) #27	cnbpa (ENSHHUG00000026294) #28	ENSHHUG00000026288 #29	ENSHHUG00000026285 #30	IQSEC1 (ENSHHUG00000026204) #31	NUP210 (ENSHHUG00000026120) #32	FBLN2 (ENSHHUG00000026083) #33	WNT7A (ENSHHUG00000026069) #35	zgc:171857 (ENSHHUG00000026065) #36	ENSHHUG00000026056 #37
Salmoninae_a	ANCESTRAL SPECIES	15	ENSGT00940000161930	ENSGT00390000018730.A.e.c #7	ENSGT00940000160902.c.b.b #8	ENSGT00940000158073.a.a #9	ENSGT00390000011620.a.a.b.f.a #10	ENSGT00940000160354.j.b	ENSGT00940000159853.c #12	ENSGT00940000157379.l.a #13	ENSGT00740000116961.a	ENSGT00940000155218.A.d #14	ENSGT00940000161589.q #15	ENSGT00390000005939.a.b.a.a #17	ENSGT00940000163813.k #18	ENSGT00940000156490.b.a.c #19	ENSGT00990000211061	ENSGT00940000157262.m.b.a #22	ENSGT00940000153541.A.d #23	ENSGT00940000156027.a.e #24	ENSGT00390000003282.B.e.a #25	ENSGT00940000156062.n.c #26	ENSGT00940000158273.m.a	ENSGT00940000156084.a.a #27	ENSGT00950000183041.A.a.b.a #28	ENSGT00940000164112.a.k.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a.c #31	ENSGT00390000009491.d.o #32	ENSGT00940000156047.b.c #33	ENSGT00940000158523.c.a.d #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a.c #37
Salmo	ANCESTRAL SPECIES	39	ENSGT00390000018730.A.e.c #7	ENSGT00940000160902.c.b.b #8	ENSGT00990000209425	ENSGT00940000158073.a.a #9	ENSGT00390000011620.a.a.b.f.a #10	ENSGT00940000160354.j.b	ENSGT00940000159853.c #12	ENSGT00940000157379.l.a #13	ENSGT00740000116961.a	ENSGT00940000155218.A.d #14	ENSGT00940000161589.q #15	ENSGT00390000005939.a.b.a.a #17	ENSGT00940000163813.k #18	ENSGT00940000156490.b.a.c #19	ENSGT00990000211061	ENSGT00940000157262.m.b.a #22	ENSGT00940000153541.A.d #23	ENSGT00940000156027.a.e #24	ENSGT00390000003282.B.e.a #25	ENSGT00940000156062.n.c #26	ENSGT00940000158273.m.a	ENSGT00940000156084.a.a #27	ENSGT00950000183041.A.a.b.a #28	ENSGT00940000164112.a.k.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a.c #31	ENSGT00390000009491.d.o #32	ENSGT00940000156047.b.c #33	ENSGT00940000158523.c.a.d #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a.c #37
River trout	MODERN SPECIES	20	ENSSTUG00000027079	CDH4 (ENSSTUG00000023854) #9	TAF4 (ENSSTUG00000023734) #10	ENSSTUG00000023700	SS18L1 (ENSSTUG00000023680) #12	MTG2 (ENSSTUG00000023556) #13	ENSSTUG00000023533	ENSSTUG00000023470 #14	ENSSTUG00000023444 #15	ENSSTUG00000023432	ENSSTUG00000023429 #17	irf10 (ENSSTUG00000023405) #18	bmp7b (ENSSTUG00000023390) #19	ENSSTUG00000023360	ENSSTUG00000023348 #21	DUSP7 (ENSSTUG00000023320) #22	ENSSTUG00000023300 #23	slc6a1a (ENSSTUG00000023232) #24	VGLL4 (ENSSTUG00000023195) #25	syn2a (ENSSTUG00000019732) #26	ENSSTUG00000019571	RAF1 (ENSSTUG00000018748) #27	cnbpa (ENSSTUG00000018687) #28	ENSSTUG00000018649 #29	ENSSTUG00000018632 #30	IQSEC1 (ENSSTUG00000018328) #31	NUP210 (ENSSTUG00000017715) #32	FBLN2 (ENSSTUG00000017495) #33	WNT7A (ENSSTUG00000017462) #35	zgc:171857 (ENSSTUG00000017428) #36	ENSSTUG00000017399 #37
Atlantic salmon	MODERN SPECIES	6	kcnk15 (ENSSSAG00000049673) #8	ENSSSAG00000119015	CDH4 (ENSSSAG00000096125) #9	TAF4 (ENSSSAG00000040325) #10	PSA7 (ENSSSAG00000040286)	SS18L1 (ENSSSAG00000095110) #12	MTG2 (ENSSSAG00000040162) #13	ENSSSAG00000105660	ENSSSAG00000040049 #14	ENSSSAG00000038989 #15	ENSSSAG00000038288 #17	ENSSSAG00000038413 #18	ENSSSAG00000037663 #19	ENSSSAG00000037152	ENSSSAG00000036866 #21	DUS7 (ENSSSAG00000036380) #22	TNNC1 (ENSSSAG00000036263) #23	slc6a1a (ENSSSAG00000034299) #24	ENSSSAG00000089027 #25	syn2a (ENSSSAG00000008160) #26	ENSSSAG00000007991	ENSSSAG00000087293	ENSSSAG00000014280 #27	cnbpa (ENSSSAG00000007968) #28	ENSSSAG00000104725 #29	IQSEC1 (ENSSSAG00000007667) #31	NUP210 (ENSSSAG00000007421) #32	FBLN2 (ENSSSAG00000007361) #33	WNT7A (ENSSSAG00000083105) #35	ENSSSAG00000007323 #37	fbxw12 (ENSSSAG00000007336) #36
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000154897.q.e	ENSGT00940000161930	ENSGT00390000018730.A.e.c #7	ENSGT00940000160902.c.b.b.a #8	ENSGT00940000160902.c.b.b.b #8	ENSGT00940000158073.a.a #9	ENSGT00390000011620.a.a.b.f.a #10	ENSGT00940000167759	ENSGT00940000159853.c #12	ENSGT00940000157379.l.a #13	ENSGT00940000155218.A.d #14	ENSGT00940000161589.q #15	ENSGT00390000005939.a.b.a.a #17	ENSGT00940000163813.k #18	ENSGT00940000156490.b.a.c #19	ENSGT00940000157262.m.b.a #22	ENSGT00940000153541.A.d #23	ENSGT00940000156027.a.e #24	ENSGT00390000003282.B.e.a #25	ENSGT00940000156062.n.c #26	ENSGT00940000158273.m.a	ENSGT00940000156084.a.a #27	ENSGT00950000183041.A.a.b.a #28	ENSGT00940000164112.a.k.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a.c #31	ENSGT00390000009491.d.o #32	ENSGT00940000156047.b.c #33	ENSGT00940000158523.c.a.d #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a.c #37
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00510000046470.a.a.b.d	ENSGT00940000154897.q.e	ENSGT00940000161930	ENSGT00390000018730.A.e.c #7	ENSGT00940000160902.c.b.b.a #8	ENSGT00940000158073.a.a #9	ENSGT00390000011620.a.a.b.f.a #10	ENSGT00940000167759	ENSGT00940000159853.c #12	ENSGT00740000116961.a	ENSGT00940000155218.A.d #14	ENSGT00940000161589.q #15	ENSGT00390000005939.a.b.a.a #17	ENSGT00940000163813.k #18	ENSGT00940000156490.b.a.c #19	ENSGT00940000157262.m.b.a #22	ENSGT00940000153541.A.d #23	ENSGT00940000156027.a.e #24	ENSGT00390000003282.B.e.a #25	ENSGT00940000156062.n.c #26	ENSGT00940000158273.m.a	ENSGT00940000156084.a.a #27	ENSGT00950000183041.A.a.b.a #28	ENSGT00940000164112.a.k.a #29	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a.c #31	ENSGT00390000009491.d.o #32	ENSGT00940000156047.b.c #33	ENSGT00940000158523.c.a.d #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a.c #37
Coho salmon	MODERN SPECIES	8	ENSOKIG00005010365	ENSOKIG00005010362	ENSOKIG00005010355	CDH4 (ENSOKIG00005007931) #9	TAF4 (ENSOKIG00005007756) #10	ENSOKIG00005007723	SS18L1 (ENSOKIG00005007666) #12	ENSOKIG00005007653	ENSOKIG00005007634	ENSOKIG00005007612 #14	ENSOKIG00005007571 #15	ENSOKIG00005007564 #17	ENSOKIG00005007548 #18	bmp7b (ENSOKIG00005007536) #19	ENSOKIG00005007514 #21	DUSP7 (ENSOKIG00005007491) #22	ENSOKIG00005007471 #23	slc6a1a (ENSOKIG00005007368) #24	VGLL4 (ENSOKIG00005007344) #25	syn2a (ENSOKIG00005005639) #26	ENSOKIG00005005496	ENSOKIG00005005487	RAF1 (ENSOKIG00005005365) #27	cnbpa (ENSOKIG00005005323) #28	ENSOKIG00005005317 #29	ENSOKIG00005005310 #30	IQSEC1 (ENSOKIG00005004481) #31	NUP210 (ENSOKIG00005040185) #32	FBLN2 (ENSOKIG00005039413) #33	WNT7A (ENSOKIG00005039363) #35	zgc:171857 (ENSOKIG00005039294) #36
Chinook salmon	MODERN SPECIES	7	prkcbp1l (ENSOTSG00005013763)	col9a3 (ENSOTSG00005013744)	ogfr (ENSOTSG00005013743) #7	kcnk15 (ENSOTSG00005013740) #8	rufy3 (ENSOTSG00005013737)	CDH4 (ENSOTSG00005013510) #9	TAF4 (ENSOTSG00005013381) #10	PSMA7 (ENSOTSG00005013358)	SS18L1 (ENSOTSG00005013352) #12	ENSOTSG00005013350	ENSOTSG00005013349 #14	ENSOTSG00005013346 #15	ENSOTSG00005013343 #17	irf10 (ENSOTSG00005013342) #18	bmp7b (ENSOTSG00005013340) #19	DUSP7 (ENSOTSG00005013327) #22	ENSOTSG00005013323 #23	slc6a1a (ENSOTSG00005013270) #24	VGLL4 (ENSOTSG00005013268) #25	syn2a (ENSOTSG00005012320) #26	ENSOTSG00005012312	RAF1 (ENSOTSG00005011868) #27	cnbpa (ENSOTSG00005011857) #28	ENSOTSG00005011855 #29	ENSOTSG00005011853 #30	IQSEC1 (ENSOTSG00005008047) #31	NUP210 (ENSOTSG00005008035) #32	FBLN2 (ENSOTSG00005007211) #33	WNT7A (ENSOTSG00005007204) #35	zgc:171857 (ENSOTSG00005007203) #36	ENSOTSG00005007202 #37
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000026545	ogfr (ENSOMYG00000060480) #7	kcnk15 (ENSOMYG00000065257) #8	CDH4 (ENSOMYG00000039422) #9	TAF4 (ENSOMYG00000038530) #10	ENSOMYG00000038494	ENSOMYG00000038478	ENSOMYG00000056500	SS18L1 (ENSOMYG00000038431) #12	MTG2 (ENSOMYG00000038412) #13	ENSOMYG00000038389 #14	ENSOMYG00000038360 #15	ENSOMYG00000038325 #17	ENSOMYG00000038340 #18	ENSOMYG00000065416 #19	ENSOMYG00000038290 #22	ENSOMYG00000038279 #23	slc6a1a (ENSOMYG00000038238) #24	ENSOMYG00000038214 #25	syn2a (ENSOMYG00000037514) #26	ENSOMYG00000037258	ENSOMYG00000037086 #27	cnbpa (ENSOMYG00000037003) #28	ENSOMYG00000036991 #29	ENSOMYG00000036987 #30	IQSEC1 (ENSOMYG00000060750) #31	NUP210 (ENSOMYG00000036054) #32	FBLN2 (ENSOMYG00000035747) #33	WNT7A (ENSOMYG00000068194) #35	zgc:171857 (ENSOMYG00000035689) #36	ENSOMYG00000064867
Salmoninae	ANCESTRAL SPECIES	465			ENSGT00940000158073.a.b #9	ENSGT00390000011620.a.a.b.f.b #10	ENSGT00940000156010.db #11	ENSGT00940000159695	ENSGT00940000159853.d #12	ENSGT00940000157379.l.b #13	ENSGT00940000161589.r #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a.b #17	ENSGT00940000163813.l #18	ENSGT00940000156490.b.a.d #19	ENSGT00390000001787 #20	ENSGT00940000156030.j.j #21	ENSGT00940000157262.m.b.b #22	ENSGT00940000153541.A.c #23	ENSGT00940000156027.a.f #24	ENSGT00390000003282.B.e.b #25	ENSGT00940000156062.n.d #26	ENSGT00940000158273.m.b	ENSGT00940000156084.a.b #27	ENSGT00950000183041.A.a.b.b #28	ENSGT00940000164112.a.k.b #29
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00940000167904.a	ENSGT00940000158073.a.b #9	ENSGT00390000011620.a.a.b.f.b #10	ENSGT00940000156010.db #11	ENSGT00940000159695	ENSGT00940000159853.d #12	ENSGT00940000157379.l.b #13	ENSGT00740000116961.b	ENSGT00940000161589.r #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a.b #17	ENSGT00940000163813.l #18	ENSGT00940000156490.b.a.d #19	ENSGT00390000001787 #20	ENSGT00940000156030.j.j #21	ENSGT00940000157262.m.b.b #22	ENSGT00940000153541.A.c #23	ENSGT00940000156027.a.f #24	ENSGT00390000003282.B.e.b #25	ENSGT00940000156062.n.d #26	ENSGT00940000158273.m.b	ENSGT00940000156084.a.b #27	ENSGT00950000183041.A.a.b.b #28	ENSGT00940000164112.a.k.b #29	ENSGT00940000182532	ENSGT00940000156915.f.a.d #31	ENSGT00390000009491.d.p #32	ENSGT00940000156047.b.d #33	ENSGT00940000158523.c.a.c #35	ENSGT00940000164549.a.a.d #37	ENSGT00940000158284.vb.b
Salmo	ANCESTRAL SPECIES	4	ENSGT00940000163687	ENSGT00940000160902.c.b.a #8	ENSGT00940000158073.a.b #9	ENSGT00390000011620.a.a.b.f.b #10	ENSGT00940000156010.db #11	ENSGT00940000167759	ENSGT00940000159853.d #12	ENSGT00940000157379.l.b #13	ENSGT00740000116961.b	ENSGT00940000161589.r #15	ENSGT00390000005939.a.b.a.b #17	ENSGT00940000163813.l #18	ENSGT00940000156490.b.a.d #19	ENSGT00390000001787 #20	ENSGT00940000156030.j.j #21	ENSGT00940000157262.m.b.b #22	ENSGT00940000153541.A.c #23	ENSGT00940000156027.a.f #24	ENSGT00390000003282.B.e.b #25	ENSGT00940000156062.n.d #26	ENSGT00940000158273.m.b	ENSGT00940000156084.a.b #27	ENSGT00950000183041.A.a.b.b #28	ENSGT00940000164112.a.k.b #29	ENSGT00940000182532	ENSGT00940000156915.f.a.d #31	ENSGT00390000009491.d.p #32	ENSGT00940000156047.b.d #33	ENSGT00940000158523.c.a.c #35	ENSGT00940000164549.a.a.d #37	ENSGT00940000158284.vb.b
Atlantic salmon	MODERN SPECIES	4	CDH4 (ENSSSAG00000094300) #9	ENSSSAG00000109030	taf4 (ENSSSAG00000045879) #10	lsm14b (ENSSSAG00000045845) #11	ENSSSAG00000045742	SS18L1 (ENSSSAG00000040243) #12	mtg2 (ENSSSAG00000045717) #13	y4629 (ENSSSAG00000045699)	ENSSSAG00000045657 #15	ENSSSAG00000084801	ENSSSAG00000082434 #17	ENSSSAG00000121498 #18	ENSSSAG00000087720 #19	ENSSSAG00000045416 #20	ENSSSAG00000044979 #21	ENSSSAG00000044955 #22	ENSSSAG00000044930 #23	slc6a1a (ENSSSAG00000043626) #24	ENSSSAG00000043588 #25	syn2a (ENSSSAG00000020439) #26	ENSSSAG00000016562	ENSSSAG00000121239	RAF1 (ENSSSAG00000087185) #27	ENSSSAG00000007959 #29	IQSEC1 (ENSSSAG00000010201) #31	NUP210 (ENSSSAG00000009711) #32	FBLN2 (ENSSSAG00000008885) #33	WNT7A (ENSSSAG00000098279) #35	ENSSSAG00000008699 #37	adtrp1 (ENSSSAG00000008678)	ENSSSAG00000119561
River trout	MODERN SPECIES	23	ENSSTUG00000050171	COL9A3 (ENSSTUG00000050175)	kcnk15 (ENSSTUG00000050192) #8	CDH4 (ENSSTUG00000050207) #9	TAF4 (ENSSTUG00000050283) #10	lsm14b (ENSSTUG00000050286) #11	ENSSTUG00000050289	MTG2 (ENSSTUG00000050298) #13	ENSSTUG00000050302	ENSSTUG00000050308 #15	ENSSTUG00000050312 #17	irf10 (ENSSTUG00000050316) #18	bmp7b (ENSSTUG00000050322) #19	spo11 (ENSSTUG00000050338) #20	ENSSTUG00000003633 #21	DUSP7 (ENSSTUG00000003870) #22	ENSSTUG00000003897 #23	slc6a1a (ENSSTUG00000003932) #24	VGLL4 (ENSSTUG00000003988) #25	ENSSTUG00000004031	RAF1 (ENSSTUG00000004779) #27	cnbpa (ENSSTUG00000005293) #28	ENSSTUG00000005313 #29	ENSSTUG00000005421	IQSEC1 (ENSSTUG00000005479) #31	ENSSTUG00000005797	ENSSTUG00000005806	ENSSTUG00000005811	NUP210 (ENSSTUG00000005830) #32	FBLN2 (ENSSTUG00000006286) #33	WNT7A (ENSSTUG00000007105) #35
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00940000167904.a	ENSGT00940000158073.a.b #9	ENSGT00390000011620.a.a.b.f.b #10	ENSGT00940000156010.db #11	ENSGT00940000159695	ENSGT00940000159853.d #12	ENSGT00940000157379.l.b #13	ENSGT00740000116961.b	ENSGT00940000161589.r #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a.b #17	ENSGT00940000163813.l #18	ENSGT00940000156490.b.a.d #19	ENSGT00390000001787 #20	ENSGT00940000156030.j.j #21	ENSGT00940000157262.m.b.b #22	ENSGT00940000153541.A.c #23	ENSGT00940000156027.a.f #24	ENSGT00390000003282.B.e.b #25	ENSGT00940000156062.n.d #26	ENSGT00940000158273.m.b	ENSGT00940000156084.a.b #27	ENSGT00950000183041.A.a.b.b #28	ENSGT00940000164112.a.k.b #29	ENSGT00940000156915.f.a.d #31	ENSGT00390000009491.d.p #32	ENSGT00940000156047.b.d #33	ENSGT00940000158523.c.a.c #35	ENSGT00940000164549.a.a.d #37	ENSGT00940000158284.vb.b	ENSGT00940000154471.a.b.a.a.b.b.d
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00940000160902.c.b.a #8	ENSGT00940000167904.a	ENSGT00940000158073.a.b #9	ENSGT00390000011620.a.a.b.f.b #10	ENSGT00940000156010.db #11	ENSGT00940000159695.db	ENSGT00940000159853.d #12	ENSGT00940000157379.l.b #13	ENSGT00940000161589.r #15	ENSGT00940000165182.c #16	ENSGT00390000005939.a.b.a.b #17	ENSGT00940000163813.l #18	ENSGT00940000156490.b.a.d #19	ENSGT00390000001787 #20	ENSGT00940000156030.j.j #21	ENSGT00940000157262.m.b.b #22	ENSGT00940000153541.A.c #23	ENSGT00940000156027.a.f #24	ENSGT00390000003282.B.e.b #25	ENSGT00940000156062.n.d #26	ENSGT00940000158273.m.b	ENSGT00940000156084.a.b #27	ENSGT00950000183041.A.a.b.b #28	ENSGT00940000164112.a.k.b #29	ENSGT00940000182532	ENSGT01010000230178	ENSGT00390000009491.d.p #32	ENSGT00940000156047.b.d #33	ENSGT00940000158523.c.a.c #35	ENSGT00940000164549.a.a.d #37	ENSGT00940000158284.vb.b
Chinook salmon	MODERN SPECIES	14	ckmt1 (ENSOTSG00005019243)	ENSOTSG00005019530	ENSOTSG00005019531	si:ch1073-281m9.1 (ENSOTSG00005019532)	ENSOTSG00005019533	hsd17b12a (ENSOTSG00005019534)	api5 (ENSOTSG00005019535)	samm50 (ENSOTSG00005019536)	ENSOTSG00005019958	ENSOTSG00005019959	tdg.1 (ENSOTSG00005019960)	ENSOTSG00005019961	ENSOTSG00005020007	spo11 (ENSOTSG00005020236) #20	ENSOTSG00005020733 #21	DUSP7 (ENSOTSG00005020740) #22	ENSOTSG00005020742 #23	slc6a1a (ENSOTSG00005020746) #24	VGLL4 (ENSOTSG00005020961) #25	syn2a (ENSOTSG00005020974) #26	ENSOTSG00005022208	RAF1 (ENSOTSG00005022232) #27	cnbpa (ENSOTSG00005022302) #28	ENSOTSG00005022303 #29	ENSOTSG00005027840	ENSOTSG00005027864	ENSOTSG00005027935 #32	FBLN2 (ENSOTSG00005027937) #33	WNT7A (ENSOTSG00005028122) #35	ENSOTSG00005028123 #37	adtrp1 (ENSOTSG00005028124)
Coho salmon	MODERN SPECIES	16	kcnk15 (ENSOKIG00005013434) #8	ENSOKIG00005013456	CDH4 (ENSOKIG00005013508) #9	TAF4 (ENSOKIG00005014043) #10	LSM14B (ENSOKIG00005014146) #11	PSMA7 (ENSOKIG00005014161)	SS18L1 (ENSOKIG00005014201) #12	MTG2 (ENSOKIG00005014255) #13	ENSOKIG00005014273 #15	ENSOKIG00005014287 #16	ENSOKIG00005014289 #17	irf10 (ENSOKIG00005014293) #18	BMP7 (ENSOKIG00005014314) #19	spo11 (ENSOKIG00005014331) #20	ENSOKIG00005014605 #21	DUSP7 (ENSOKIG00005014759) #22	ENSOKIG00005014774 #23	slc6a1a (ENSOKIG00005014797) #24	VGLL4 (ENSOKIG00005014895) #25	syn2a (ENSOKIG00005014947) #26	ENSOKIG00005015625	RAF1 (ENSOKIG00005015922) #27	cnbpa (ENSOKIG00005016035) #28	ENSOKIG00005016060 #29	IQSEC1 (ENSOKIG00005016202) #31	ENSOKIG00005018060	FBLN2 (ENSOKIG00005018076) #33	WNT7A (ENSOKIG00005018188) #35	ENSOKIG00005018196 #37	adtrp1 (ENSOKIG00005018209)	BICD2 (ENSOKIG00005018238)
Rainbow trout	MODERN SPECIES	7	TAF4 (ENSOMYG00000047125) #10	LSM14B (ENSOMYG00000047131) #11	ENSOMYG00000047133	SS18L1 (ENSOMYG00000047136) #12	MTG2 (ENSOMYG00000047141) #13	ENSOMYG00000038406	ENSOMYG00000047146 #15	ENSOMYG00000064417	ENSOMYG00000072712	ENSOMYG00000047149	ENSOMYG00000047156 #17	IRF10a (ENSOMYG00000047162) #18	ENSOMYG00000047171 #19	ENSOMYG00000047178 #20	ENSOMYG00000047191 #21	ENSOMYG00000047202 #22	ENSOMYG00000047204 #23	slc6a1a (ENSOMYG00000047213) #24	ENSOMYG00000047222 #25	syn2a (ENSOMYG00000029121) #26	ENSOMYG00000049529	ENSOMYG00000029281	ENSOMYG00000029550 #27	cnbpa (ENSOMYG00000029713) #28	ENSOMYG00000029739 #29	ENSOMYG00000048424	ENSOMYG00000030335 #31	ENSOMYG00000032197	ENSOMYG00000048445	ENSOMYG00000032219 #33	ENSOMYG00000074569
Huchen	MODERN SPECIES	2089														spo11 (ENSHHUG00000014597) #20	ENSHHUG00000014639 #21	DUSP7 (ENSHHUG00000014668) #22	ENSHHUG00000014715 #23	slc6a1a (ENSHHUG00000014726) #24	VGLL4 (ENSHHUG00000014768) #25	syn2a (ENSHHUG00000014779) #26	ENSHHUG00000014896	RAF1 (ENSHHUG00000014935) #27	cnbpa (ENSHHUG00000014966) #28	ENSHHUG00000015000 #29
Northern pike	MODERN SPECIES	11	SS18L1 (ENSELUG00000016375) #12	MTG2 (ENSELUG00000016399) #13	ENSELUG00000016435	ENSELUG00000016417 #14	ENSELUG00000016448 #14	ENSELUG00000016466 #15	ENSELUG00000026495 #15	ENSELUG00000028265	ENSELUG00000016476 #16	ENSELUG00000024742 #17	irf10 (ENSELUG00000016496) #18	bmp7b (ENSELUG00000000624) #19	ENSELUG00000016512 #20	spo11 (ENSELUG00000016656) #20	ENSELUG00000027063 #21	DUSP7 (ENSELUG00000016725) #22	tnnc1 (ENSELUG00000024716) #23	slc6a1a (ENSELUG00000016865) #24	VGLL4 (ENSELUG00000016892) #25	syn2a (ENSELUG00000016963) #26	ENSELUG00000017401	raf1a (ENSELUG00000017588) #27	cnbpa (ENSELUG00000017627) #28	ENSELUG00000000698 #29	ENSELUG00000017665 #30	ENSELUG00000000702	ENSELUG00000017674	ENSELUG00000017694	ENSELUG00000017705	IQSEC1 (ENSELUG00000017810) #31	NUP210 (ENSELUG00000017911) #32
Otomorpha	ANCESTRAL SPECIES	26		ENSGT00940000157506.f	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000164454	ENSGT00940000155094.b	ENSGT00950000182835.c.c.g.b	ENSGT00940000162980	ENSGT00950000182994.B.a.a.a.d.b	ENSGT00940000156650.i	ENSGT00950000182994.B.a.a.a.d.a	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n ##22	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00950000183041.A.a.b #28	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000157709.j	ENSGT00940000153776.a.b	ENSGT00940000159708	ENSGT00940000155448.c.b
Clupeiformes	ANCESTRAL SPECIES	298							ENSGT00940000157506.f	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000164454	ENSGT00950000182994.B.a.a.a.d.a	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n ##22	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00950000183041.A.a.b #28	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33
Atlantic herring	MODERN SPECIES	20	ENSCHAG00000011797	ENSCHAG00000011823	ENSCHAG00000011832	ENSCHAG00000011896	ENSCHAG00000011923	ENSCHAG00000012425	ENSCHAG00000012432	smc1al (ENSCHAG00000012525)	PFKFB1 (ENSCHAG00000016115)	ndnl2 (ENSCHAG00000018210)	ITIH6 (ENSCHAG00000018239)	GDI1 (ENSCHAG00000018356)	ENSCHAG00000018525	tafazzin (ENSCHAG00000018782)	atp6ap1a (ENSCHAG00000018899)	DUSP7 (ENSCHAG00000019003) #22	ENSCHAG00000019015 #23	slc6a1a (ENSCHAG00000019029) #24	VGLL4 (ENSCHAG00000019262) #25	syn2a (ENSCHAG00000019267) #26	ENSCHAG00000019273	raf1a (ENSCHAG00000019289) #27	cnbpa (ENSCHAG00000019771) #28	ENSCHAG00000019833 #30	IQSEC1 (ENSCHAG00000019858) #31	FBLN2 (ENSCHAG00000020606) #33	NUP210 (ENSCHAG00000021425) #32	srsf6a (ENSCHAG00000021645)	snx21 (ENSCHAG00000021688)	ENSCHAG00000021696	PIGT (ENSCHAG00000021719)
P. kingsleyae	MODERN SPECIES	77	PHF2 (ENSPKIG00000018055)	BARX1 (ENSPKIG00000018006)	zgc:171857 (ENSPKIG00000017983) #36	WNT7A (ENSPKIG00000017955) #35	NUP210 (ENSPKIG00000017842) #32	IQSEC1 (ENSPKIG00000017703) #31	ENSPKIG00000017636 #30	zgc:77375 (ENSPKIG00000017599) #29	cnbpa (ENSPKIG00000017562) #28	raf1a (ENSPKIG00000017461) #27	TIMP4 (ENSPKIG00000017371)	syn2a (ENSPKIG00000017339) #26	VGLL4 (ENSPKIG00000017317) #25	slc6a1a (ENSPKIG00000017271) #24	ENSPKIG00000017158	DUSP7 (ENSPKIG00000017098) #22	ALAS1 (ENSPKIG00000017065) ##21	zgc:56699 (ENSPKIG00000017039)	nr4a1 (ENSPKIG00000017017)	tamalin (ENSPKIG00000016990)	dgkaa (ENSPKIG00000016878)	RNF41 (ENSPKIG00000016797)	SLC39A5 (ENSPKIG00000016771)	ankrd52a (ENSPKIG00000016673)	COQ10A (ENSPKIG00000016600)	CS (ENSPKIG00000016543)	ENSPKIG00000016518	SLC41A3 (ENSPKIG00000016455)	KLF15 (ENSPKIG00000016423)	ENSPKIG00000016404	CPNE9 (ENSPKIG00000016338)
Neopterygii	ANCESTRAL SPECIES	38	ENSGT00940000156027 #24	ENSGT00940000157569	ENSGT00940000166500	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00940000156030.i.b ##21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00940000153541.D ##23
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00940000166455	ENSGT00940000166256	ENSGT00990000210069	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839.a
Osteoglossiformes	ANCESTRAL SPECIES	57	ENSGT00940000157928.h	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000011897	ENSGT00390000010053.k	ENSGT00950000182952.C	ENSGT00950000183004.a.b.a.a.p	ENSGT00940000166455	ENSGT00990000210069	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00550000074921	ENSGT00940000166500.k	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798.a.b	ENSGT00940000156062.m ##26	ENSGT00940000159798.b	ENSGT00940000158273	ENSGT00390000013266
P. kingsleyae	MODERN SPECIES	60	ccdc71 (ENSPKIG00000025241)	UQCC5 (ENSPKIG00000025238)	stab1 (ENSPKIG00000025195)	NISCH (ENSPKIG00000025174)	ENSPKIG00000025168	nol8 (ENSPKIG00000025150)	ogna (ENSPKIG00000025138)	aspn (ENSPKIG00000025130)	ECM2 (ENSPKIG00000025120)	cenpp (ENSPKIG00000025115)	ippk (ENSPKIG00000025106)	si:dkey-42i9.4 (ENSPKIG00000025101)	atrip (ENSPKIG00000025096)	alas1 (ENSPKIG00000025086) #21	POC1A (ENSPKIG00000025072)	dusp7 (ENSPKIG00000025059) ##22	rpl29 (ENSPKIG00000025048)	tnnc1a (ENSPKIG00000025038) ##23	iars1 (ENSPKIG00000025011)	ENSPKIG00000024988	atp2b2 (ENSPKIG00000024938)	SLC6A11 (ENSPKIG00000024908)	slc6a1b (ENSPKIG00000024901) ##24	HRH1 (ENSPKIG00000024898)	ATG7 (ENSPKIG00000024886)	vgll4b (ENSPKIG00000024872) ##25	tamm41 (ENSPKIG00000024860)	TIMP4 (ENSPKIG00000024854)	SYN2 (ENSPKIG00000024841) ##26	PPARG (ENSPKIG00000024820)	tsen2 (ENSPKIG00000024801)
Asian bonytongue	MODERN SPECIES	14	kctd6a (ENSSFOG00015032742)	ccdc71 (ENSSFOG00015002730)	NISCH (ENSSFOG00015002444)	ENSSFOG00015002429	nol8 (ENSSFOG00015002403)	cenpp (ENSSFOG00015002304)	ogna (ENSSFOG00015002375)	aspn (ENSSFOG00015002340)	ECM2 (ENSSFOG00015002312)	ippk (ENSSFOG00015002296)	si:dkey-42i9.4 (ENSSFOG00015002276)	atrip (ENSSFOG00015002244)	ENSSFOG00015002224	alas1 (ENSSFOG00015002174) #21	POC1A (ENSSFOG00015002118)	dusp7 (ENSSFOG00015002096) ##22	rpl29 (ENSSFOG00015027961)	ENSSFOG00015002049 #23	iars1 (ENSSFOG00015001874)	atp2b2 (ENSSFOG00015001733)	SLC6A11 (ENSSFOG00015001655)	slc6a1b (ENSSFOG00015001593) ##24	HRH1 (ENSSFOG00015001587)	ATG7 (ENSSFOG00015001550)	vgll4b (ENSSFOG00015027191) ##25	tamm41 (ENSSFOG00015001457)	SYN2 (ENSSFOG00015001391) ##26	TIMP4 (ENSSFOG00015029651)	PPARG (ENSSFOG00015001328)	ENSSFOG00015001374	tsen2 (ENSSFOG00015001309)
Clupeocephala	ANCESTRAL SPECIES	20	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00390000013266	ENSGT00390000003839.a
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00390000013266	ENSGT00390000003839.a	ENSGT01030000235208
Acanthomorphata	ANCESTRAL SPECIES	6														ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000167008	ENSGT00940000160885	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000167008	ENSGT00940000160885	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Tiger tail seahorse	MODERN SPECIES	295			brk1 (ENSHCOG00000017064)	ENSHCOG00000017100	rbm5 (ENSHCOG00000017110)	SLC38A3 (ENSHCOG00000017139)	ENSHCOG00000017142	gnai2b (ENSHCOG00000017164)	inka1b (ENSHCOG00000017191)	ENSHCOG00000017195	ENSHCOG00000017231	ENSHCOG00000017242	ENSHCOG00000017245	alas1 (ENSHCOG00000017279) #21	POC1A (ENSHCOG00000017310)	dusp7 (ENSHCOG00000017323) ##22	rpl29 (ENSHCOG00000000478)	iars1 (ENSHCOG00000017482)	atp2b2 (ENSHCOG00000017535)	arfgap1 (ENSHCOG00000017564)	ENSHCOG00000017574	ENSHCOG00000017724	ENSHCOG00000017749	ENSHCOG00000017766	ENSHCOG00000017775	sys1 (ENSHCOG00000017787)	ENSHCOG00000017893	ENSHCOG00000000484	ENSHCOG00000017950	INPP1 (ENSHCOG00000017960)	ENSHCOG00000017970
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351
Eupercaria	ANCESTRAL SPECIES		ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Ballan wrasse	MODERN SPECIES	92	AMHR2 (ENSLBEG00000015150)	ENSLBEG00000015173	PCBP2 (ENSLBEG00000015211)	MAP3K12 (ENSLBEG00000015291)	myg1 (ENSLBEG00000015364)	ENSLBEG00000015389	col2a1b (ENSLBEG00000015437)	nckap1l (ENSLBEG00000015581)	ENSLBEG00000015735	ENSLBEG00000015786	ENSLBEG00000015807	ITGA7 (ENSLBEG00000015898)	shisa10.1 (ENSLBEG00000016059)	alas1 (ENSLBEG00000016079) #21	POC1A (ENSLBEG00000016119)	dusp7 (ENSLBEG00000016186) ##22	rpl29 (ENSLBEG00000016213)	iars1 (ENSLBEG00000016283)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000160885	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000160885	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00940000166449	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
European seabass	MODERN SPECIES	10	PCBP2 (ENSDLAG00005012212)	MAP3K12 (ENSDLAG00005011757)	ENSDLAG00005011734	LRRC3 (ENSDLAG00005031801)	ENSDLAG00005011706	ENSDLAG00005011292	PDE1B (ENSDLAG00005010944)	PPP1R1A (ENSDLAG00005030883)	ENSDLAG00005026687	ENSDLAG00005010224	ENSDLAG00005010202	ENSDLAG00005034054	ENSDLAG00005010116 #21	ENSDLAG00005032085	POC1A (ENSDLAG00005010069)	ENSDLAG00005028163 ##22	rpl29 (ENSDLAG00005010039)	iars1 (ENSDLAG00005009731)	atp2b2 (ENSDLAG00005009542)	SLC6A11 (ENSDLAG00005008002)	slc6a1b (ENSDLAG00005007430) ##24	HRH1 (ENSDLAG00005007404)	ATG7 (ENSDLAG00005007062)	VGLL4 (ENSDLAG00005029870) ##25	tamm41 (ENSDLAG00005033686)	TIMP4 (ENSDLAG00005006990)	syn2b (ENSDLAG00005006779)	PPARG (ENSDLAG00005006757)	ENSDLAG00005006745	ENSDLAG00005006726	ENSDLAG00005006677
Large yellow croaker	MODERN SPECIES	478	AMHR2 (ENSLCRG00005017338)	PCBP2 (ENSLCRG00005017322)	MAP3K12 (ENSLCRG00005016991)	myg1 (ENSLCRG00005016939)	ENSLCRG00005016935	COL2A1 (ENSLCRG00005014800)	nckap1l (ENSLCRG00005014295)	ENSLCRG00005012774	PPP1R1A (ENSLCRG00005012665)	npffl (ENSLCRG00005012660)	ITGA7 (ENSLCRG00005012588)	ENSLCRG00005012548	alas1 (ENSLCRG00005012389) #21	b9d2 (ENSLCRG00005012378)	POC1A (ENSLCRG00005012359)	dusp7 (ENSLCRG00005012335) ##22	rpl29 (ENSLCRG00005012330)	ENSLCRG00005012313	iars1 (ENSLCRG00005012181)	ENSLCRG00005012159	atp2b2 (ENSLCRG00005012156)	SLC6A11 (ENSLCRG00005006569)	slc6a1b (ENSLCRG00005005535) ##24	HRH1 (ENSLCRG00005005448)	ATG7 (ENSLCRG00005002534)	vgll4b (ENSLCRG00005021822) ##25	tamm41 (ENSLCRG00005021818)	TIMP4 (ENSLCRG00005021816)	syn2b (ENSLCRG00005021799)	PPARG (ENSLCRG00005021791)	ENSLCRG00005021789
Gilthead seabream	MODERN SPECIES	20	AMHR2 (ENSSAUG00010024036)	PCBP2 (ENSSAUG00010024041)	MAP3K12 (ENSSAUG00010024058)	myg1 (ENSSAUG00010024414)	ENSSAUG00010024416	ENSSAUG00010024419	nckap1l (ENSSAUG00010024435)	ENSSAUG00010025643	ENSSAUG00010025660	npffl (ENSSAUG00010025661)	ITGA7 (ENSSAUG00010025669)	ENSSAUG00010004095	alas1 (ENSSAUG00010004176) #21	POC1A (ENSSAUG00010004378)	b9d2 (ENSSAUG00010004393)	dusp7 (ENSSAUG00010004396) ##22	rpl29 (ENSSAUG00010004402)	iars1 (ENSSAUG00010004435)	ENSSAUG00010004466	atp2b2 (ENSSAUG00010004579)	SLC6A11 (ENSSAUG00010009115)	slc6a1b (ENSSAUG00010013135) ##24	HRH1 (ENSSAUG00010013292)	ATG7 (ENSSAUG00010013308)	vgll4b (ENSSAUG00010013402) ##25	tamm41 (ENSSAUG00010013407)	syn2b (ENSSAUG00010013419)	timp4.2 (ENSSAUG00010013473)	PPARG (ENSSAUG00010013475)	ENSSAUG00010013549	IFFO2 (ENSSAUG00010013550)
Perciformes	ANCESTRAL SPECIES		ENSGT00940000160885	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000160885	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238
Lumpfish	MODERN SPECIES	20	AMHR2 (ENSCLMG00005008524)	PCBP2 (ENSCLMG00005008518)	MAP3K12 (ENSCLMG00005008515)	myg1 (ENSCLMG00005008513)	ENSCLMG00005008511	ENSCLMG00005006700	nckap1l (ENSCLMG00005006300)	ENSCLMG00005005957	PPP1R1A (ENSCLMG00005005953)	npffl (ENSCLMG00005005952)	ITGA7 (ENSCLMG00005005091)	shisa10.1 (ENSCLMG00005005072)	alas1 (ENSCLMG00005005069) #21	b9d2 (ENSCLMG00005005068)	POC1A (ENSCLMG00005005040)	dusp7 (ENSCLMG00005005036) ##22	rpl29 (ENSCLMG00005005034)	iars1 (ENSCLMG00005004860)	atp2b2 (ENSCLMG00005004225)	SLC6A11 (ENSCLMG00005004218)	slc6a1b (ENSCLMG00005004216) ##24	HRH1 (ENSCLMG00005004214)	ATG7 (ENSCLMG00005002271)	vgll4b (ENSCLMG00005002259) ##25	tamm41 (ENSCLMG00005002257)	TIMP4 (ENSCLMG00005002255)	syn2b (ENSCLMG00005002118)	PPARG (ENSCLMG00005002037)	ENSCLMG00005002035	IFFO2 (ENSCLMG00005002033)	MRTO4 (ENSCLMG00005002031)
Stickleback	MODERN SPECIES	17	sp1 (ENSGACG00000006667)	ENSGACG00000006672	ENSGACG00000006676	PCBP2 (ENSGACG00000006681)	MAP3K12 (ENSGACG00000006732)	myg1 (ENSGACG00000006741)	ENSGACG00000006817	col2a1b (ENSGACG00000006819)	nckap1l (ENSGACG00000006854)	ENSGACG00000006946	ITGA7 (ENSGACG00000006983)	shisa10.1 (ENSGACG00000006994)	alas1 (ENSGACG00000006997) #21	POC1A (ENSGACG00000007015)	b9d2 (ENSGACG00000007022)	dusp7 (ENSGACG00000007023) ##22	rpl29 (ENSGACG00000007041)	iars1 (ENSGACG00000007055)	atp2b2 (ENSGACG00000007138)	SLC6A11 (ENSGACG00000007204)	slc6a1b (ENSGACG00000007265) ##24	ENSGACG00000007297	ENSGACG00000007304	ENSGACG00000007307	ENSGACG00000007311	HRH1 (ENSGACG00000007333)	ATG7 (ENSGACG00000007339)	vgll4b (ENSGACG00000007347) ##25	tamm41 (ENSGACG00000007353)	syn2b (ENSGACG00000007358)	timp4.2 (ENSGACG00000007365)
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000167008	ENSGT00940000160885	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Pike perch	MODERN SPECIES	17	ENSSLUG00000018933	PCBP2 (ENSSLUG00000018910)	MAP3K12 (ENSSLUG00000018620)	myg1 (ENSSLUG00000018603)	ENSSLUG00000018597	COL2A1 (ENSSLUG00000018543)	nckap1l (ENSSLUG00000017965)	ENSSLUG00000016310	PPP1R1A (ENSSLUG00000016191)	npffl (ENSSLUG00000016188)	ITGA7 (ENSSLUG00000016154)	shisa10.1 (ENSSLUG00000016146)	alas1 (ENSSLUG00000016128) #21	b9d2 (ENSSLUG00000016124)	POC1A (ENSSLUG00000016113)	dusp7 (ENSSLUG00000016104) ##22	rpl29 (ENSSLUG00000016099)	iars1 (ENSSLUG00000015971)	ENSSLUG00000015917	atp2b2 (ENSSLUG00000014119)	SLC6A11 (ENSSLUG00000010566)	slc6a1b (ENSSLUG00000010281) ##24	HRH1 (ENSSLUG00000010251)	ATG7 (ENSSLUG00000009644)	vgll4b (ENSSLUG00000009596) ##25	tamm41 (ENSSLUG00000009590)	TIMP4 (ENSSLUG00000009584)	syn2b (ENSSLUG00000009133)	PPARG (ENSSLUG00000008826)	ENSSLUG00000008802	IFFO2 (ENSSLUG00000008799)
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428.c	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Fugu	MODERN SPECIES	10	myg1 (ENSTRUG00000011121)	ENSTRUG00000011099	ENSTRUG00000010345	nckap1l (ENSTRUG00000009633)	ENSTRUG00000009342	ENSTRUG00000009292	ENSTRUG00000028742	ENSTRUG00000032881	npff (ENSTRUG00000009275)	ITGA7 (ENSTRUG00000008645)	ENSTRUG00000020632	shisa10.1 (ENSTRUG00000008529)	alas1 (ENSTRUG00000008224) #21	b9d2 (ENSTRUG00000021104)	POC1A (ENSTRUG00000007900)	dusp7 (ENSTRUG00000032652) ##22	rpl29 (ENSTRUG00000026122)	iars1 (ENSTRUG00000007056)	atp2b2 (ENSTRUG00000005989)	SLC6A11 (ENSTRUG00000004732)	slc6a1b (ENSTRUG00000004090) ##24	HRH1 (ENSTRUG00000030936)	ATG7 (ENSTRUG00000003240)	vgll4b (ENSTRUG00000002884) ##25	tamm41 (ENSTRUG00000002553)	TIMP4 (ENSTRUG00000023421)	syn2b (ENSTRUG00000015588)	pparg (ENSTRUG00000015522)	ENSTRUG00000033023	IFFO2 (ENSTRUG00000015469)	MRTO4 (ENSTRUG00000019838)
Tetraodon	MODERN SPECIES	2	ENSTNIG00000014832	rbck1 (ENSTNIG00000014831)	ENSTNIG00000014830	tbc1d20 (ENSTNIG00000014829)	MAP3K12 (ENSTNIG00000014828)	myg1 (ENSTNIG00000014827)	ENSTNIG00000014826	COL2A1 (ENSTNIG00000014825)	nckap1l (ENSTNIG00000014824)	ENSTNIG00000014823	PPP1R1A (ENSTNIG00000014822)	ITGA7 (ENSTNIG00000014821)	alas1 (ENSTNIG00000014820) #21	b9d2 (ENSTNIG00000014819)	POC1A (ENSTNIG00000014818)	dusp7 (ENSTNIG00000014817) ##22	rpl29 (ENSTNIG00000014816)	iars1 (ENSTNIG00000014814)	ENSTNIG00000014815	atp2b2 (ENSTNIG00000014813)	SLC6A11 (ENSTNIG00000014812)	vgll4b (ENSTNIG00000014811) ##25	tamm41 (ENSTNIG00000014810)	syn2b (ENSTNIG00000014806)	timp4.2 (ENSTNIG00000014809)	HRH1 (ENSTNIG00000014808)	ATG7 (ENSTNIG00000014807)	PPARG (ENSTNIG00000014805)	ENSTNIG00000014804	IFFO2 (ENSTNIG00000014803)	ENSTNIG00000001495
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000160885	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000160885	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798	ENSGT00940000158273.l	ENSGT00940000156062.m ##26	ENSGT00940000158273.k.a.a
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00730000112701	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256.a	ENSGT00940000166256.b	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798	ENSGT00940000156062.m ##26	ENSGT00940000158273.k.a.a	ENSGT00940000158273.l
Turbot	MODERN SPECIES	18	PCBP2 (ENSSMAG00000012889)	MAP3K12 (ENSSMAG00000012938)	ENSSMAG00000028488	ENSSMAG00000013013	ENSSMAG00000013036	ENSSMAG00000013190	ENSSMAG00000013278	ENSSMAG00000013321	ENSSMAG00000013358	ENSSMAG00000013375	ENSSMAG00000032365	ENSSMAG00000013464	ENSSMAG00000013470 #21	POC1A (ENSSMAG00000013505)	ENSSMAG00000013545	DUSP7 (ENSSMAG00000013563) ##22	rpl29 (ENSSMAG00000013571)	iars1 (ENSSMAG00000013630)	ENSSMAG00000013836	atp2b2 (ENSSMAG00000013851)	SLC6A11 (ENSSMAG00000014022)	slc6a1b (ENSSMAG00000014059) ##24	HRH1 (ENSSMAG00000014111)	ATG7 (ENSSMAG00000014121)	vgll4b (ENSSMAG00000014225) ##25	tamm41 (ENSSMAG00000014248)	ENSSMAG00000014265	timp4.2 (ENSSMAG00000014313)	PPARG (ENSSMAG00000014325)	ENSSMAG00000014344	ENSSMAG00000014373
Tongue sole	MODERN SPECIES	2	ENSCSEG00000010596	AMHR2 (ENSCSEG00000010574)	PCBP2 (ENSCSEG00000010540)	MAP3K12 (ENSCSEG00000010511)	myg1 (ENSCSEG00000010499)	ENSCSEG00000010494	COL2A1 (ENSCSEG00000010458)	nckap1l (ENSCSEG00000010418)	ENSCSEG00000010387	ENSCSEG00000010379	npffl (ENSCSEG00000010371)	ITGA7 (ENSCSEG00000010344)	ENSCSEG00000010336	alas1 (ENSCSEG00000010315) #21	POC1A (ENSCSEG00000010287)	dusp7 (ENSCSEG00000010277) ##22	rpl29 (ENSCSEG00000010267)	ENSCSEG00000010258	iars1 (ENSCSEG00000010191)	atp2b2 (ENSCSEG00000010152)	ENSCSEG00000010144	ENSCSEG00000010140	ENSCSEG00000010134	ENSCSEG00000010123	ENSCSEG00000010113	trib3 (ENSCSEG00000010107)	pnp4a (ENSCSEG00000010100)	REM1 (ENSCSEG00000010064)	ENSCSEG00000010043	st3gal8 (ENSCSEG00000009925)	gata1a (ENSCSEG00000009914)
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000167008	ENSGT00940000160885	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000158273.k.b	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351
Seriola	ANCESTRAL SPECIES	20	ENSGT00940000160763	ENSGT00940000157804	ENSGT00940000167008	ENSGT00940000160885	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084.o	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000158273.k.b	ENSGT00940000167517	ENSGT00940000158273.l	ENSGT00390000005351	ENSGT00510000046803.a
Greater amberjack	MODERN SPECIES	53	ENSSDUG00000018745	AMHR2 (ENSSDUG00000018694)	PCBP2 (ENSSDUG00000018636)	MAP3K12 (ENSSDUG00000018605)	myg1 (ENSSDUG00000018594)	ENSSDUG00000018583	COL2A1 (ENSSDUG00000016598)	nckap1l (ENSSDUG00000016366)	ENSSDUG00000016333	PPP1R1A (ENSSDUG00000016300)	npffl (ENSSDUG00000016279)	ITGA7 (ENSSDUG00000016235)	shisa10.1 (ENSSDUG00000016221)	alas1 (ENSSDUG00000016190) #21	POC1A (ENSSDUG00000016161)	dusp7 (ENSSDUG00000016151) ##22	rpl29 (ENSSDUG00000016140)	iars1 (ENSSDUG00000016007)	atp2b2 (ENSSDUG00000015803)	SLC6A11 (ENSSDUG00000015724)	slc6a1b (ENSSDUG00000015693) ##24	HRH1 (ENSSDUG00000015689)	ENSSDUG00000015682	ATG7 (ENSSDUG00000015627)	vgll4b (ENSSDUG00000015594) ##25	tamm41 (ENSSDUG00000015552)	TIMP4 (ENSSDUG00000015536)	syn2b (ENSSDUG00000015496)	PPARG (ENSSDUG00000015453)	ENSSDUG00000015403	IFFO2 (ENSSDUG00000015382)
Yellowtail amberjack	MODERN SPECIES	3138	AMHR2 (ENSSLDG00000001952)	PCBP2 (ENSSLDG00000002018)	MAP3K12 (ENSSLDG00000002093)	myg1 (ENSSLDG00000002150)	ENSSLDG00000002186	COL2A1 (ENSSLDG00000002272)	nckap1l (ENSSLDG00000003075)	ENSSLDG00000003526	ENSSLDG00000003615	npffl (ENSSLDG00000003629)	ITGA7 (ENSSLDG00000003670)	ENSSLDG00000003748	ENSSLDG00000003761	alas1 (ENSSLDG00000003778) #21	POC1A (ENSSLDG00000003828)	dusp7 (ENSSLDG00000003903) ##22	rpl29 (ENSSLDG00000003932)	iars1 (ENSSLDG00000003987)	atp2b2 (ENSSLDG00000004231)	SLC6A11 (ENSSLDG00000004331)	slc6a1b (ENSSLDG00000004413) ##24	HRH1 (ENSSLDG00000004489)	ATG7 (ENSSLDG00000004520)	vgll4b (ENSSLDG00000004629) ##25	tamm41 (ENSSLDG00000004679)	syn2b (ENSSLDG00000004730)	timp4.2 (ENSSLDG00000004804)	PPARG (ENSSLDG00000004816)
Barramundi perch	MODERN SPECIES	436									ITGA7 (ENSLCAG00010013933)	ENSLCAG00010013997	ENSLCAG00010014000	alas1 (ENSLCAG00010014002) #21	b9d2 (ENSLCAG00010014007)	ENSLCAG00010014009	POC1A (ENSLCAG00010014011)	dusp7 (ENSLCAG00010014013) ##22	rpl29 (ENSLCAG00010014019)	iars1 (ENSLCAG00010014055)	ENSLCAG00010014121	atp2b2 (ENSLCAG00010014311)
Zig-zag eel	MODERN SPECIES	19	PCBP2 (ENSMAMG00000010416)	MAP3K12 (ENSMAMG00000010441)	ENSMAMG00000010465	ENSMAMG00000010495	ENSMAMG00000010561	ENSMAMG00000027252	ENSMAMG00000013724	ENSMAMG00000013941	ENSMAMG00000013964	ENSMAMG00000013981	ENSMAMG00000014009	ENSMAMG00000014104	ENSMAMG00000014120 #21	ENSMAMG00000014207	POC1A (ENSMAMG00000014233)	ENSMAMG00000014261 ##22	rpl29 (ENSMAMG00000028053)	iars1 (ENSMAMG00000014297)	ENSMAMG00000027927	atp2b2 (ENSMAMG00000014381)	SLC6A11 (ENSMAMG00000014443)	slc6a1b (ENSMAMG00000014523) ##24	HRH1 (ENSMAMG00000014567)	ATG7 (ENSMAMG00000014581)	vgll4b (ENSMAMG00000014618) ##25	tamm41 (ENSMAMG00000014669)	SYN2 (ENSMAMG00000014714) ##26	TIMP4 (ENSMAMG00000014738)	PPARG (ENSMAMG00000014767)	ENSMAMG00000026179	ENSMAMG00000014828
Climbing perch	MODERN SPECIES	18	PCBP2 (ENSATEG00000025007)	MAP3K12 (ENSATEG00000025006)	ENSATEG00000025005	ENSATEG00000025004	ENSATEG00000025003	ENSATEG00000025002	ENSATEG00000025001	PPP1R1A (ENSATEG00000028089)	ENSATEG00000024999	ENSATEG00000024998	ENSATEG00000024997	ENSATEG00000028959	ENSATEG00000024995 #21	ENSATEG00000024994	POC1A (ENSATEG00000024993)	ENSATEG00000024992 ##22	rpl29 (ENSATEG00000029215)	ENSATEG00000028236	iars1 (ENSATEG00000024989)	atp2b2 (ENSATEG00000024988)	SLC6A11 (ENSATEG00000024987)	slc6a1b (ENSATEG00000024986) ##24	HRH1 (ENSATEG00000024985)	ATG7 (ENSATEG00000024984)	vgll4b (ENSATEG00000024983) ##25	tamm41 (ENSATEG00000024982)	TIMP4 (ENSATEG00000024981)	syn2b (ENSATEG00000024980)	PPARG (ENSATEG00000024979)	ENSATEG00000030130	ENSATEG00000024977
Siamese fighting fish	MODERN SPECIES	16	myg1 (ENSBSLG00000025075)	ENSBSLG00000025073	ENSBSLG00000023439	nckap1l (ENSBSLG00000022651)	ENSBSLG00000022507	PPP1R1A (ENSBSLG00000022494)	ENSBSLG00000022487	ENSBSLG00000022473	ITGA7 (ENSBSLG00000021932)	ENSBSLG00000021883	ENSBSLG00000021843	shisa10.1 (ENSBSLG00000021828)	alas1 (ENSBSLG00000021739) #21	b9d2 (ENSBSLG00000021723)	POC1A (ENSBSLG00000021703)	dusp7 (ENSBSLG00000021634) ##22	rpl29 (ENSBSLG00000021628)	iars1 (ENSBSLG00000021252)	atp2b2 (ENSBSLG00000013700)	SLC6A11 (ENSBSLG00000011956)	slc6a1b (ENSBSLG00000010137) ##24	HRH1 (ENSBSLG00000010087)	ATG7 (ENSBSLG00000009769)	vgll4b (ENSBSLG00000009702) ##25	tamm41 (ENSBSLG00000009507)	TIMP4 (ENSBSLG00000009486)	syn2b (ENSBSLG00000008560)	PPARG (ENSBSLG00000008274)	ENSBSLG00000023742	IFFO2 (ENSBSLG00000023738)	MRTO4 (ENSBSLG00000023724)
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00980000200109	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351
Turquoise killifish	MODERN SPECIES	1619	COL2A1 (ENSNFUG00015008689)	nckap1l (ENSNFUG00015007752)	ENSNFUG00015007475	ENSNFUG00015007454	PPP1R1A (ENSNFUG00015007452)	NPFFL (ENSNFUG00015007442)	ITGA7 (ENSNFUG00015007273)	ENSNFUG00015007221	COX14 (ENSNFUG00015007214)	BCDIN3D (ENSNFUG00015007212)	zgc:112163 (ENSNFUG00015007202)	SHISA5 (ENSNFUG00015007200)	ALAS1 (ENSNFUG00015007174) #21	b9d2 (ENSNFUG00015007168)	POC1A (ENSNFUG00015007146)	DUSP7 (ENSNFUG00015007134) ##22	rpl29 (ENSNFUG00015007127)	IARS (ENSNFUG00015007060)	ENSNFUG00015007015	ATP2B2 (ENSNFUG00015006830)	SLC6A11 (ENSNFUG00015005507)	slc6a1b (ENSNFUG00015005140) ##24	ENSNFUG00015005079	HRH1 (ENSNFUG00015005075)	ATG7 (ENSNFUG00015005012)	VGLL4B (ENSNFUG00015004941) ##25	TAMM41 (ENSNFUG00015004916)	ENSNFUG00015004911	Nfu_g_1_021376 (ENSNFUG00015004790)	TIMP4 (ENSNFUG00015004756)	PPARG (ENSNFUG00015004713)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m.a ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m.b ##26	ENSGT00940000167517	ENSGT00940000156062.m.a ##26	ENSGT00940000159798
Poecilia	ANCESTRAL SPECIES	23	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500.e	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m.a ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273
NAME_6	ANCESTRAL SPECIES	7	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500.e	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m.b ##26	ENSGT00940000167517	ENSGT00940000156062.m.a ##26	ENSGT00940000159798
Amazon molly	MODERN SPECIES	254	ENSPFOG00000007805	PCBP2 (ENSPFOG00000008011)	MAP3K12 (ENSPFOG00000008087)	myg1 (ENSPFOG00000008202)	ENSPFOG00000008225	COL2A1 (ENSPFOG00000009924)	nckap1l (ENSPFOG00000010097)	ENSPFOG00000010599	ENSPFOG00000022867	ENSPFOG00000010642	ITGA7 (ENSPFOG00000011133)	ENSPFOG00000011173	alas1 (ENSPFOG00000011304) #21	POC1A (ENSPFOG00000011354)	b9d2 (ENSPFOG00000020364)	dusp7 (ENSPFOG00000011374) ##22	pacrg (ENSPFOG00000011380)	rpl29 (ENSPFOG00000011385)	iars1 (ENSPFOG00000011883)	ENSPFOG00000021809	atp2b2 (ENSPFOG00000011920)	SLC6A11 (ENSPFOG00000024327)	slc6a1b (ENSPFOG00000012353) ##24	HRH1 (ENSPFOG00000020365)	ATG7 (ENSPFOG00000012633)	vgll4b (ENSPFOG00000012835) ##25	tamm41 (ENSPFOG00000012866)	syn2b (ENSPFOG00000012942)	timp4.2 (ENSPFOG00000013103)	PPARG (ENSPFOG00000013138)	ENSPFOG00000013189
Guppy	MODERN SPECIES	457	ENSPREG00000007784	PCBP2 (ENSPREG00000007742)	MAP3K12 (ENSPREG00000007677)	myg1 (ENSPREG00000007647)	ENSPREG00000007608	COL2A1 (ENSPREG00000007539)	nckap1l (ENSPREG00000007472)	ENSPREG00000007417	PPP1R1A (ENSPREG00000007388)	ENSPREG00000007353	ITGA7 (ENSPREG00000007286)	ENSPREG00000007269	alas1 (ENSPREG00000007222) #21	ENSPREG00000007203	POC1A (ENSPREG00000007172)	dusp7 (ENSPREG00000007153) ##22	pacrg (ENSPREG00000007136)	rpl29 (ENSPREG00000007066)	iars1 (ENSPREG00000006938)	atp2b2 (ENSPREG00000006686)	SLC6A11 (ENSPREG00000006585)	slc6a1b (ENSPREG00000006538) ##24	HRH1 (ENSPREG00000006524)	ATG7 (ENSPREG00000006462)	tamm41 (ENSPREG00000006421)	TIMP4 (ENSPREG00000006403)	syn2b (ENSPREG00000006342)	PPARG (ENSPREG00000006322)	ENSPREG00000006290	IFFO2 (ENSPREG00000006274)	MRTO4 (ENSPREG00000006249)
Platyfish	MODERN SPECIES	12	sp1 (ENSXMAG00000017829)	ENSXMAG00000017826	PCBP2 (ENSXMAG00000023803)	MAP3K12 (ENSXMAG00000017771)	myg1 (ENSXMAG00000017759)	ENSXMAG00000017757	COL2A1 (ENSXMAG00000017719)	nckap1l (ENSXMAG00000017687)	ENSXMAG00000017675	ENSXMAG00000021147	ENSXMAG00000017674	ITGA7 (ENSXMAG00000017644)	shisa10.1 (ENSXMAG00000017643)	alas1 (ENSXMAG00000017638) #21	POC1A (ENSXMAG00000017631)	dusp7 (ENSXMAG00000023607) ##22	pacrg (ENSXMAG00000017628)	rpl29 (ENSXMAG00000020948)	iars1 (ENSXMAG00000017562)	atp2b2 (ENSXMAG00000017498)	SLC6A11 (ENSXMAG00000017478)	slc6a1b (ENSXMAG00000017454) ##24	HRH1 (ENSXMAG00000029743)	ATG7 (ENSXMAG00000017429)	vgll4b (ENSXMAG00000017420) ##25	tamm41 (ENSXMAG00000017407)	syn2b (ENSXMAG00000017351)	timp4.2 (ENSXMAG00000028986)	PPARG (ENSXMAG00000017330)	ENSXMAG00000017329	IFFO2 (ENSXMAG00000017316)
NAME_4	ANCESTRAL SPECIES	14	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000156062.m.a ##26	ENSGT00940000159798	ENSGT00940000158273	ENSGT00390000005351
Mummichog	MODERN SPECIES	2262	sp1 (ENSFHEG00000016071)	ENSFHEG00000016043	PCBP2 (ENSFHEG00000016024)	MAP3K12 (ENSFHEG00000015967)	myg1 (ENSFHEG00000015924)	ENSFHEG00000015918	COL2A1 (ENSFHEG00000015893)	nckap1l (ENSFHEG00000015814)	ENSFHEG00000015695	ENSFHEG00000015628	ENSFHEG00000015594	ITGA7 (ENSFHEG00000015568)	ENSFHEG00000015551	alas1 (ENSFHEG00000015544) #21	POC1A (ENSFHEG00000015504)	dusp7 (ENSFHEG00000015455) ##22	pacrg (ENSFHEG00000015438)	rpl29 (ENSFHEG00000015425)	iars1 (ENSFHEG00000015399)	atp2b2 (ENSFHEG00000015161)	SLC6A11 (ENSFHEG00000015008)	slc6a1b (ENSFHEG00000014949) ##24	HRH1 (ENSFHEG00000014905)	ATG7 (ENSFHEG00000014885)	vgll4b (ENSFHEG00000014793) ##25
Sheepshead minnow	MODERN SPECIES	146	ENSCVAG00000009873	PCBP2 (ENSCVAG00000009913)	MAP3K12 (ENSCVAG00000010006)	myg1 (ENSCVAG00000010043)	ENSCVAG00000010062	COL2A1 (ENSCVAG00000015242)	nckap1l (ENSCVAG00000015442)	ENSCVAG00000015466	PPP1R1A (ENSCVAG00000015474)	ENSCVAG00000015478	ITGA7 (ENSCVAG00000015509)	ENSCVAG00000015522	alas1 (ENSCVAG00000015548) #21	b9d2 (ENSCVAG00000015554)	POC1A (ENSCVAG00000015594)	dusp7 (ENSCVAG00000015606) ##22	ENSCVAG00000015617
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00980000200109	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Javanese ricefish	MODERN SPECIES	19	ENSOJAG00000001678	ENSOJAG00000001708	PCBP2 (ENSOJAG00000001741)	MAP3K12 (ENSOJAG00000001982)	myg1 (ENSOJAG00000002733)	ENSOJAG00000002749	COL2A1 (ENSOJAG00000003297)	nckap1l (ENSOJAG00000008812)	ENSOJAG00000009696	ENSOJAG00000010618	ENSOJAG00000010635	shisa10.1 (ENSOJAG00000010693)	alas1 (ENSOJAG00000010712) #21	POC1A (ENSOJAG00000010853)	b9d2 (ENSOJAG00000011002)	dusp7 (ENSOJAG00000011011) ##22	rpl29 (ENSOJAG00000011048)	iars1 (ENSOJAG00000011128)	ENSOJAG00000011331	atp2b2 (ENSOJAG00000011558)	SLC6A11 (ENSOJAG00000012456)	slc6a1b (ENSOJAG00000015157) ##24	HRH1 (ENSOJAG00000015323)	ATG7 (ENSOJAG00000015434)	vgll4b (ENSOJAG00000016510) ##25	syn2b (ENSOJAG00000016551)	tamm41 (ENSOJAG00000017026)	timp4.2 (ENSOJAG00000017047)	PPARG (ENSOJAG00000017061)	ENSOJAG00000017221	IFFO2 (ENSOJAG00000017246)
Indian medaka	MODERN SPECIES	8	ENSOMEG00000018945	PCBP2 (ENSOMEG00000019014)	MAP3K12 (ENSOMEG00000019086)	myg1 (ENSOMEG00000019142)	ENSOMEG00000019175	COL2A1 (ENSOMEG00000019204)	nckap1l (ENSOMEG00000019423)	ENSOMEG00000000517	PPP1R1A (ENSOMEG00000019501)	ENSOMEG00000019514	ITGA7 (ENSOMEG00000019674)	ENSOMEG00000019704	alas1 (ENSOMEG00000019729) #21	ENSOMEG00000019743	POC1A (ENSOMEG00000019834)	dusp7 (ENSOMEG00000019870) ##22	rpl29 (ENSOMEG00000019919)	iars1 (ENSOMEG00000020072)	atp2b2 (ENSOMEG00000020468)	SLC6A11 (ENSOMEG00000020583)	slc6a1b (ENSOMEG00000020620) ##24	HRH1 (ENSOMEG00000000546)	ATG7 (ENSOMEG00000020713)	vgll4b (ENSOMEG00000020758) ##25	tamm41 (ENSOMEG00000020813)	syn2b (ENSOMEG00000020873)	timp4.2 (ENSOMEG00000020898)	PPARG (ENSOMEG00000020937)	ENSOMEG00000021039	IFFO2 (ENSOMEG00000021078)	MRTO4 (ENSOMEG00000021110)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00980000200109	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238
Japanese Medaka HdrR	MODERN SPECIES	19	PCBP2 (ENSORLG00000005176)	MAP3K12 (ENSORLG00000005144)	myg1 (ENSORLG00000005118)	ENSORLG00000005112	col2a1b (ENSORLG00000005102)	nckap1l (ENSORLG00000005002)	ENSORLG00000004927	PPP1R1A (ENSORLG00000021863)	ENSORLG00000024600	ITGA7 (ENSORLG00000004894)	ENSORLG00000004804	shisa10.1 (ENSORLG00000026078)	alas1 (ENSORLG00000004789) #21	b9d2 (ENSORLG00000028375)	POC1A (ENSORLG00000004778)	dusp7 (ENSORLG00000004762) ##22	ENSORLG00000028518	rpl29 (ENSORLG00000023610)	iars1 (ENSORLG00000004747)	atp2b2 (ENSORLG00000004673)	SLC6A11 (ENSORLG00000004636)	slc6a1b (ENSORLG00000004595) ##24	ENSORLG00000026509	HRH1 (ENSORLG00000004554)	ATG7 (ENSORLG00000004519)	vgll4b (ENSORLG00000004490) ##25	tamm41 (ENSORLG00000004476)	TIMP4 (ENSORLG00000026708)	syn2b (ENSORLG00000004447)	pparg (ENSORLG00000004432)	ENSORLG00000030181
Chinese medaka	MODERN SPECIES	1091	PCBP2 (ENSOSIG00000023210)	MAP3K12 (ENSOSIG00000023220)	myg1 (ENSOSIG00000023235)	ENSOSIG00000023237	ENSOSIG00000023417	nckap1l (ENSOSIG00000023647)	ENSOSIG00000023769	ENSOSIG00000023770	ITGA7 (ENSOSIG00000023792)	ENSOSIG00000023811	alas1 (ENSOSIG00000023812) #21	ENSOSIG00000023813	b9d2 (ENSOSIG00000023814)	POC1A (ENSOSIG00000023838)	rpl29 (ENSOSIG00000023849)	dusp7 (ENSOSIG00000023851) ##22	iars1 (ENSOSIG00000023884)	atp2b2 (ENSOSIG00000023935)	SLC6A11 (ENSOSIG00000023978)	slc6a1b (ENSOSIG00000023982) ##24
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000157804	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00980000200109	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000153615.a.a.b	ENSGT00950000182805.a.a.a.a.a	ENSGT00940000163827.a.a.a.a.f.a	ENSGT00940000153189.C	ENSGT00940000163827.a.a.a.a.f.b	ENSGT00940000163827.a.a.b	ENSGT00940000157478.a	ENSGT00940000159495	ENSGT00390000012980.b	ENSGT00510000048041	ENSGT00390000002376	ENSGT00390000002240	ENSGT00940000158891	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00940000153615.a.a.b	ENSGT00950000182805.a.a.a.a.a	ENSGT00940000163827.a.a.a.a.f.a	ENSGT00940000153189.C	ENSGT00940000163827.a.a.a.a.f.b	ENSGT00940000163827.a.a.b	ENSGT00940000157478.a	ENSGT00940000159495	ENSGT00390000012980.b	ENSGT00510000048041	ENSGT00390000002376	ENSGT00390000002240	ENSGT00940000158891	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00940000169508	ENSGT00940000153615.a.a.b	ENSGT00950000182805.a.a.a.a.a	ENSGT00940000163827.a.a.a.a.f.a	ENSGT00940000153189.C	ENSGT00940000163827.a.a.a.a.f.b	ENSGT00940000163827.a.a.b	ENSGT00940000159495	ENSGT00390000012980.b	ENSGT00510000048041	ENSGT00390000002376	ENSGT00390000002240	ENSGT00940000158891	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Burton s mouthbrooder	MODERN SPECIES	412	ENSHBUG00000011003	ENSHBUG00000010992	eno1b (ENSHBUG00000010941)	slc6a11a (ENSHBUG00000010876)	ppil1 (ENSHBUG00000000744)	slc6a11a (ENSHBUG00000010784)	ENSHBUG00000010747	FRS3 (ENSHBUG00000000287)	tspo (ENSHBUG00000010687)	uqcc2 (ENSHBUG00000010673)	tomm6 (ENSHBUG00000010652)	zgc:112163 (ENSHBUG00000010645)	sirt4 (ENSHBUG00000010626)	alas1 (ENSHBUG00000010609) #21	ENSHBUG00000010556	dusp7 (ENSHBUG00000010538) ##22	rpl29 (ENSHBUG00000010519)	iars1 (ENSHBUG00000010503)	atp2b2 (ENSHBUG00000010370)	SLC6A11 (ENSHBUG00000010118)	slc6a1b (ENSHBUG00000010057) ##24	HRH1 (ENSHBUG00000010014)	ATG7 (ENSHBUG00000010001)	vgll4b (ENSHBUG00000009908) ##25	tamm41 (ENSHBUG00000009852)	syn2b (ENSHBUG00000009804)	timp4.2 (ENSHBUG00000009788)	PPARG (ENSHBUG00000009776)	ENSHBUG00000009716	IFFO2 (ENSHBUG00000009674)	MRTO4 (ENSHBUG00000009670)
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00940000153615.a.a.b	ENSGT00950000182805.a.a.a.a.a	ENSGT00940000163827.a.a.a.a.f.a	ENSGT00940000153189.C	ENSGT00940000163827.a.a.a.a.f.b	ENSGT00940000163827.a.a.b	ENSGT00940000157478.a	ENSGT00940000159495	ENSGT00390000012980.b	ENSGT00510000048041	ENSGT00390000002376	ENSGT00390000002240	ENSGT00940000158891	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
P. nyererei	MODERN SPECIES	307	ENSPNYG00000020058	eno1b (ENSPNYG00000020018)	ENSPNYG00000019994	ppil1 (ENSPNYG00000019980)	slc6a11a (ENSPNYG00000019846)	ENSPNYG00000019780	FRS3 (ENSPNYG00000019748)	uqcc2 (ENSPNYG00000019729)	tspo (ENSPNYG00000019713)	tomm6 (ENSPNYG00000019704)	zgc:112163 (ENSPNYG00000019680)	sirt4 (ENSPNYG00000019661)	alas1 (ENSPNYG00000019612) #21	b9d2 (ENSPNYG00000019598)	POC1A (ENSPNYG00000019517)	dusp7 (ENSPNYG00000019492) ##22	rpl29 (ENSPNYG00000019481)	ENSPNYG00000019473	iars1 (ENSPNYG00000019391)	atp2b2 (ENSPNYG00000019319)	SLC6A11 (ENSPNYG00000019290)	ENSPNYG00000019268 ##24	slc6a1b (ENSPNYG00000019236) ##24	HRH1 (ENSPNYG00000019210)	ATG7 (ENSPNYG00000019145)	vgll4b (ENSPNYG00000019121) ##25	tamm41 (ENSPNYG00000019087)	TIMP4 (ENSPNYG00000019073)	syn2b (ENSPNYG00000018930)	PPARG (ENSPNYG00000018859)	ENSPNYG00000018835
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00940000169508	ENSGT00940000153615.a.a.b	ENSGT00950000182805.a.a.a.a.a	ENSGT00940000163827.a.a.a.a.f.a	ENSGT00940000153189.C	ENSGT00940000163827.a.a.a.a.f.b	ENSGT00940000157478.a	ENSGT00940000159495	ENSGT00390000012980.b	ENSGT00510000048041	ENSGT00390000002376	ENSGT00390000002240	ENSGT00940000158891	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Zebra mbuna	MODERN SPECIES	1108	eno1b (ENSMZEG00005013250)	slc6a11a (ENSMZEG00005013291)	ppil1 (ENSMZEG00005013380)	slc6a11a (ENSMZEG00005013389)	ENSMZEG00005013405	FRS3 (ENSMZEG00005013423)	uqcc2 (ENSMZEG00005013438)	tspo (ENSMZEG00005013441)	zgc:112163 (ENSMZEG00005013445)	tomm6 (ENSMZEG00005013454)	sirt4 (ENSMZEG00005013463)	ENSMZEG00005013469	alas1 (ENSMZEG00005013480) #21	b9d2 (ENSMZEG00005013497)	POC1A (ENSMZEG00005013503)	dusp7 (ENSMZEG00005013514) ##22	rpl29 (ENSMZEG00005013519)	iars1 (ENSMZEG00005013533)	ENSMZEG00005013595	atp2b2 (ENSMZEG00005013627)	SLC6A11 (ENSMZEG00005013719)	slc6a1b (ENSMZEG00005013731) ##24	HRH1 (ENSMZEG00005013753)	ATG7 (ENSMZEG00005013767)	vgll4b (ENSMZEG00005013788) ##25	tamm41 (ENSMZEG00005013798)	syn2b (ENSMZEG00005013833)	timp4.2 (ENSMZEG00005013868)	PPARG (ENSMZEG00005013881)	ENSMZEG00005013908	IFFO2 (ENSMZEG00005013923)
Eastern happy	MODERN SPECIES	17	ENSACLG00000018419	eno1b (ENSACLG00000018333)	slc6a11a (ENSACLG00000018294)	ppil1 (ENSACLG00000018274)	slc6a11a (ENSACLG00000018228)	ENSACLG00000018168	FRS3 (ENSACLG00000018111)	tspo (ENSACLG00000018062)	uqcc2 (ENSACLG00000018044)	tomm6 (ENSACLG00000018032)	zgc:112163 (ENSACLG00000018004)	sirt4 (ENSACLG00000017985)	alas1 (ENSACLG00000017931) #21	ENSACLG00000017917	POC1A (ENSACLG00000017869)	dusp7 (ENSACLG00000017839) ##22	rpl29 (ENSACLG00000017820)	ENSACLG00000017814	iars1 (ENSACLG00000017656)	atp2b2 (ENSACLG00000017205)	SLC6A11 (ENSACLG00000017117)	slc6a1b (ENSACLG00000017076) ##24	ENSACLG00000017062	HRH1 (ENSACLG00000016992)	ATG7 (ENSACLG00000016903)	vgll4b (ENSACLG00000016877) ##25	tamm41 (ENSACLG00000016824)	TIMP4 (ENSACLG00000016807)	syn2b (ENSACLG00000016720)	PPARG (ENSACLG00000016700)	ENSACLG00000016591
Lyretail cichlid	MODERN SPECIES	294	eno1b (ENSNBRG00000022485)	slc6a11a (ENSNBRG00000022419)	ppil1 (ENSNBRG00000022392)	slc6a11a (ENSNBRG00000022363)	ENSNBRG00000022344	ENSNBRG00000022334	FRS3 (ENSNBRG00000022316)	tspo (ENSNBRG00000022301)	uqcc2 (ENSNBRG00000022253)	tomm6 (ENSNBRG00000022237)	zgc:112163 (ENSNBRG00000022227)	sirt4 (ENSNBRG00000022214)	alas1 (ENSNBRG00000022182) #21	b9d2 (ENSNBRG00000022171)	POC1A (ENSNBRG00000022135)	dusp7 (ENSNBRG00000022120) ##22	rpl29 (ENSNBRG00000022109)	iars1 (ENSNBRG00000022044)	atp2b2 (ENSNBRG00000021986)	SLC6A11 (ENSNBRG00000021952)	ENSNBRG00000021933 ##24	slc6a1b (ENSNBRG00000021905) ##24	HRH1 (ENSNBRG00000021892)	ATG7 (ENSNBRG00000021861)	vgll4b (ENSNBRG00000021834) ##25	tamm41 (ENSNBRG00000021806)	TIMP4 (ENSNBRG00000021729)	syn2b (ENSNBRG00000021585)	PPARG (ENSNBRG00000021527)	ENSNBRG00000021508	IFFO2 (ENSNBRG00000021468)
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Pomacentridae_A	ANCESTRAL SPECIES	38	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Amphiprion	ANCESTRAL SPECIES	57	ENSGT00940000167008	ENSGT00940000154129.gd	ENSGT00940000159006.c.a	ENSGT00390000010265	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a	ENSGT00390000016619.b	ENSGT00940000155331.B	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000174536	ENSGT00940000166256	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000005351	ENSGT00510000046803.a
Orange clownfish	MODERN SPECIES	20	PCBP2 (ENSAPEG00000008226)	MAP3K12 (ENSAPEG00000008165)	ENSAPEG00000008136	myg1 (ENSAPEG00000008109)	COL2A1 (ENSAPEG00000006442)	nckap1l (ENSAPEG00000006073)	ENSAPEG00000006004	PPP1R1A (ENSAPEG00000005984)	npffl (ENSAPEG00000005967)	ITGA7 (ENSAPEG00000005940)	ENSAPEG00000005899	ENSAPEG00000005886	ENSAPEG00000005874	alas1 (ENSAPEG00000005844) #21	POC1A (ENSAPEG00000005795)	dusp7 (ENSAPEG00000005762) ##22	rpl29 (ENSAPEG00000005754)	iars1 (ENSAPEG00000005602)	atp2b2 (ENSAPEG00000005473)	SLC6A11 (ENSAPEG00000005421)	slc6a1b (ENSAPEG00000005275) ##24	HRH1 (ENSAPEG00000005268)	ATG7 (ENSAPEG00000005195)	vgll4b (ENSAPEG00000005138) ##25	tamm41 (ENSAPEG00000005101)	ENSAPEG00000005080 ##26	TIMP4 (ENSAPEG00000005027)	syn2b (ENSAPEG00000005000)	PPARG (ENSAPEG00000004953)	ENSAPEG00000004909	IFFO2 (ENSAPEG00000004896)
Clown anemonefish	MODERN SPECIES	1685						nckap1l (ENSAOCG00000002016)	ENSAOCG00000015046	PPP1R1A (ENSAOCG00000015068)	npffl (ENSAOCG00000015086)	ITGA7 (ENSAOCG00000001994)	ENSAOCG00000015196	ENSAOCG00000015209	alas1 (ENSAOCG00000015266) #21	ENSAOCG00000015284	POC1A (ENSAOCG00000001066)	dusp7 (ENSAOCG00000015381) ##22
Spiny chromis	MODERN SPECIES	7	SBNO2 (ENSAPOG00000003185)	tjp3 (ENSAPOG00000003035)	ARHGAP45 (ENSAPOG00000002977)	POLR2E (ENSAPOG00000002935)	gpx4a (ENSAPOG00000002909)	PIP5K1C (ENSAPOG00000002871)	ENSAPOG00000002846	marchf2 (ENSAPOG00000002834)	ENSAPOG00000002812	npffl (ENSAPOG00000002802)	ITGA7 (ENSAPOG00000002786)	ENSAPOG00000002743	ENSAPOG00000002728	alas1 (ENSAPOG00000002715) #21	POC1A (ENSAPOG00000002677)	dusp7 (ENSAPOG00000002599) ##22	rpl29 (ENSAPOG00000002586)	iars1 (ENSAPOG00000002559)	ENSAPOG00000002460
Bicolor damselfish	MODERN SPECIES	493								nckap1l (ENSSPAG00000020530)	ENSSPAG00000020505	PPP1R1A (ENSSPAG00000020484)	npffl (ENSSPAG00000020476)	ITGA7 (ENSSPAG00000020446)	ENSSPAG00000020437	alas1 (ENSSPAG00000020412) #21	POC1A (ENSSPAG00000020330)	dusp7 (ENSSPAG00000020306) ##22	rpl29 (ENSSPAG00000020292)	iars1 (ENSSPAG00000020176)	ENSSPAG00000020149
Cod	MODERN SPECIES	4	ENSGMOG00000016520	ENSGMOG00000025775	tfeb (ENSGMOG00000016466)	tmem183a (ENSGMOG00000016454)	ppfia4 (ENSGMOG00000016404)	ENSGMOG00000030887	mdm4 (ENSGMOG00000016389)	ENSGMOG00000016356	ENSGMOG00000016340	ENSGMOG00000000261	ENSGMOG00000000258	ENSGMOG00000009488	ENSGMOG00000003572 #21	POC1A (ENSGMOG00000003598)	ENSGMOG00000019731	DUSP7 (ENSGMOG00000003619) ##22	rpl29 (ENSGMOG00000003626)	iars1 (ENSGMOG00000003632)	atp2b2 (ENSGMOG00000003698)	ENSGMOG00000003748	slc6a1b (ENSGMOG00000003780) ##24	ENSGMOG00000007467	ENSGMOG00000035810	ENSGMOG00000007460	arl6ip5a (ENSGMOG00000007454)	FRMD4B (ENSGMOG00000007429)	mitfa (ENSGMOG00000007421)	zgc:113054 (ENSGMOG00000007404)	foxp1b (ENSGMOG00000007392)	EIF4E3 (ENSGMOG00000007389)	gpr27 (ENSGMOG00000007387)
Protacanthopterygii	ANCESTRAL SPECIES	95	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00980000199506	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000011897	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00990000210069	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b.l ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00950000183160.C	ENSGT00940000156199.a.a	ENSGT00940000156173	ENSGT00940000177111
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	528												ENSGT00940000159941.c	ENSGT00390000010053.c	ENSGT00940000166256.f	ENSGT00940000156030.j.i.b #21	ENSGT00940000157262.m.a.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500.j.b	ENSGT00940000157569	ENSGT00940000156027.b.l.b ##24	ENSGT00940000160690.j	ENSGT00390000017509.d	ENSGT00390000017509.c.b	ENSGT00390000003282.B.f.b ##25	ENSGT00390000000616	ENSGT00950000183160.C	ENSGT00940000156199.a.a	ENSGT00940000156173.k.a	ENSGT00940000155356.c.b.b
Salmoninae_a	ANCESTRAL SPECIES	29		ENSGT00940000157562.q.a.a.a	ENSGT00390000004207	ENSGT00950000183124.A.g	ENSGT00940000157660.k.b	ENSGT00390000003224.A	ENSGT00940000155146.y	ENSGT00940000157869.e.b	ENSGT00940000155306.a.p.a	ENSGT00940000157928	ENSGT00940000157238.a.c	ENSGT00940000159941.c	ENSGT00390000010053.c	ENSGT00940000166256.f	ENSGT00940000156030.j.i.b #21	ENSGT00940000157262.m.a.a ##22	ENSGT00390000007084.m.a	ENSGT00940000166500.j.a	ENSGT00940000156027.b.l.a ##24	ENSGT00940000160690.i	ENSGT00390000003282.B.f.a.b ##25	ENSGT00950000183146.b.b.d	ENSGT01030000234648.a.a.c.a.g.b	ENSGT00390000008429.e.a.e	ENSGT00940000159711.g.f	ENSGT00940000160561.ab	ENSGT00390000007160.a.a.o	ENSGT00940000155514.c.c.b	ENSGT00390000005874.j	ENSGT00940000165085.b.b	ENSGT00440000038003
Oncorhynchus_a	ANCESTRAL SPECIES	170			ENSGT00940000157562.q.a.a.a	ENSGT00390000004207	ENSGT00950000183124.A.g	ENSGT00390000003224.A	ENSGT00940000155146.y	ENSGT00940000157869.e.b	ENSGT00940000155306.a.p.a	ENSGT00940000157928	ENSGT00940000157238.a.c	ENSGT00940000159941.c	ENSGT00390000010053.c	ENSGT00940000166256.f	ENSGT00940000156030.j.i.b #21	ENSGT00940000157262.m.a.a ##22	ENSGT00940000166500.j.a	ENSGT00940000156027.b.l.a ##24	ENSGT00940000160690.i
Coho salmon	MODERN SPECIES		ENSOKIG00005001225	ENSOKIG00005001222	SLMAP (ENSOKIG00005001181)	ENSOKIG00005001161	ENSOKIG00005001155	pdhb (ENSOKIG00005001100)	kctd6a (ENSOKIG00005001073)	ccdc71 (ENSOKIG00005001069)	stab1 (ENSOKIG00005001022)	OGN (ENSOKIG00005000984)	ECM2 (ENSOKIG00005000970)	ippk (ENSOKIG00005000957)	ENSOKIG00005000953	ENSOKIG00005000951	alas1 (ENSOKIG00005000942) #21	DUSP7 (ENSOKIG00005000938) ##22	ENSOKIG00005000931	ENSOKIG00005000930	ENSOKIG00005000924	ENSOKIG00005000824	SLC6A1 (ENSOKIG00005000721) ##24	HRH1 (ENSOKIG00005000701)	TIMP4 (ENSOKIG00005000693)	SYN2 (ENSOKIG00005000511) ##26	ENSOKIG00005000445	mkrn2 (ENSOKIG00005000432)	isy1 (ENSOKIG00005000418)	ENSOKIG00005000403 ##28	nuf2 (ENSOKIG00005000381)	ENSOKIG00005000370	acad9 (ENSOKIG00005000286)
Chinook salmon	MODERN SPECIES	180																dusp7 (ENSOTSG00005021102) ##22
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000006110	pdhb (ENSOMYG00000006083)	kctd6a (ENSOMYG00000050807)	ccdc71 (ENSOMYG00000006044)	ENSOMYG00000070695	stab1 (ENSOMYG00000005799)	ENSOMYG00000048480	OGN (ENSOMYG00000005564)	ECM2 (ENSOMYG00000005548)	ENSOMYG00000069132	ENSOMYG00000064014	IPPK (ENSOMYG00000005523)	ENSOMYG00000058335	ENSOMYG00000074040	ENSOMYG00000005322 #21	ENSOMYG00000032921 ##22	ENSOMYG00000032887	ENSOMYG00000066681	ENSOMYG00000053981	ENSOMYG00000036157 ##24	ENSOMYG00000058752	ENSOMYG00000050300	ENSOMYG00000031292 ##25	ENSOMYG00000035788	ENSOMYG00000032769	ENSOMYG00000066264	ENSOMYG00000049966	ENSOMYG00000053591	ENSOMYG00000032780	ENSOMYG00000032788	ENSOMYG00000051926
Salmo	ANCESTRAL SPECIES	124	ENSGT00940000161921.e.a.a	ENSGT00940000157562.q.a.a.a	ENSGT00390000004207	ENSGT00950000183124.A.g	ENSGT00940000157660.k.b	ENSGT00390000003224.A	ENSGT00940000155146.y	ENSGT00940000157869.e.b	ENSGT00940000155306.a.p.a	ENSGT00940000157928	ENSGT00940000157238.a.c	ENSGT00940000159941.c	ENSGT00390000010053.c	ENSGT00940000166256.f	ENSGT00940000156030.j.i.b #21	ENSGT00940000157262.m.a.a ##22	ENSGT00940000166500.j.a	ENSGT00940000156027.b.l.a ##24	ENSGT00940000160690.i	ENSGT00390000003282.B.f.a.b ##25
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000094320	ENSSSAG00000111615	ENSSSAG00000067931	ENSSSAG00000103150	pdhb (ENSSSAG00000067916)	kctd6a (ENSSSAG00000067913)	ENSSSAG00000114357	ccdc71 (ENSSSAG00000067912)	ENSSSAG00000103257	stab1 (ENSSSAG00000067902)	OGN (ENSSSAG00000102125)	ECM2 (ENSSSAG00000067872)	IPPK (ENSSSAG00000067803)	ENSSSAG00000119612	ENSSSAG00000067808 #21	ENSSSAG00000083746 ##22	ENSSSAG00000066907	ENSSSAG00000047688	ENSSSAG00000067640 ##24	ENSSSAG00000109185	ENSSSAG00000102488	ENSSSAG00000066901	ENSSSAG00000116964	ENSSSAG00000044841 ##25	ENSSSAG00000009275	ENSSSAG00000095817	ENSSSAG00000065575	ENSSSAG00000104809	ENSSSAG00000093486	ENSSSAG00000119382	ENSSSAG00000066885
River trout	MODERN SPECIES	551																dusp7 (ENSSTUG00000042879) ##22
Salmoninae	ANCESTRAL SPECIES	343	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00980000199506	ENSGT00940000157238.a.d	ENSGT00940000157444	ENSGT00940000159941.d	ENSGT00390000011897	ENSGT00390000010053.d	ENSGT00950000182952.C.g.b	ENSGT00940000170238	ENSGT00940000166455	ENSGT00940000166256.e	ENSGT00940000156030.j.i.a #21	ENSGT00940000157494	ENSGT00940000157262.m.a.b ##22
Huchen	MODERN SPECIES	5718																dusp7 (ENSHHUG00000032221) ##22
Oncorhynchus	ANCESTRAL SPECIES	81	ENSGT00940000155306.a.p.b	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00980000199506	ENSGT00940000157238.a.d	ENSGT00940000157444	ENSGT00940000159941.d	ENSGT00390000011897	ENSGT00390000010053.d	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256.e	ENSGT00940000156030.j.i.a #21	ENSGT00940000157494	ENSGT00940000157262.m.a.b ##22	ENSGT00390000007084.n	ENSGT00550000074921
Coho salmon	MODERN SPECIES	25	pdhb (ENSOKIG00005018758)	ccdc71 (ENSOKIG00005018742)	NISCH (ENSOKIG00005018720)	ENSOKIG00005018707	nol8 (ENSOKIG00005018694)	ogna (ENSOKIG00005018671)	aspn (ENSOKIG00005018663)	ECM2 (ENSOKIG00005018656)	cenpp (ENSOKIG00005018639)	ippk (ENSOKIG00005018599)	si:dkey-42i9.4 (ENSOKIG00005018583)	atrip (ENSOKIG00005018569)	ENSOKIG00005018560	ALAS1 (ENSOKIG00005018481) #21	POC1A (ENSOKIG00005018445)	DUSP7 (ENSOKIG00005018425) ##22	RPL29 (ENSOKIG00005018402)	ENSOKIG00005018375	iars1 (ENSOKIG00005018283)	ENSOKIG00005018248	vgll4b (ENSOKIG00005018234) ##25	ENSOKIG00005018228	ATG7 (ENSOKIG00005018086)	HRH1 (ENSOKIG00005018069)	SLC6A1 (ENSOKIG00005017979) ##24	SLC6A11 (ENSOKIG00005017436)	atp2b2 (ENSOKIG00005013626)	tamm41 (ENSOKIG00005013391)	PUSL1 (ENSOKIG00005013381)	ACAP3 (ENSOKIG00005013282)	ube2j2 (ENSOKIG00005013266)
Chinook salmon	MODERN SPECIES	3028																dusp7 (ENSOTSG00005042979) ##22
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000055152	ENSOMYG00000023078	nol8 (ENSOMYG00000075591)	ENSOMYG00000057548	ogna (ENSOMYG00000001781)	aspn (ENSOMYG00000001737)	ECM2 (ENSOMYG00000001645)	cenpp (ENSOMYG00000001628)	ippk (ENSOMYG00000001578)	si:dkey-42i9.4 (ENSOMYG00000001542)	atrip (ENSOMYG00000064373)	ENSOMYG00000075884	ENSOMYG00000001432 #21	ENSOMYG00000001394	ENSOMYG00000063674	ENSOMYG00000001340 ##22	ENSOMYG00000001275 ##24	ENSOMYG00000066387	ENSOMYG00000067489	ENSOMYG00000059364	ENSOMYG00000066553	ENSOMYG00000076512 ##24	ENSOMYG00000067236	ENSOMYG00000065067	ENSOMYG00000064680	ENSOMYG00000060613	ENSOMYG00000075739	HRH1 (ENSOMYG00000001293)	ENSOMYG00000049130	ENSOMYG00000066128	ATG7 (ENSOMYG00000075941)
Salmo	ANCESTRAL SPECIES	61	ENSGT00940000155146.z.a	ENSGT00940000155306.a.p.b	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a.d	ENSGT00940000157444	ENSGT00940000159941.d	ENSGT00390000010053.d	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256.e	ENSGT00940000156030.j.i.a #21	ENSGT00940000157494	ENSGT00940000157262.m.a.b ##22	ENSGT00390000007084.n	ENSGT00550000074921	ENSGT00940000166500.j.b	ENSGT00940000157569	ENSGT00940000156027.b.l.b ##24	ENSGT00940000160690.j	ENSGT00390000017509.c.a	ENSGT00390000003282.B.f.a.a ##25	ENSGT00390000000616	ENSGT00950000183160.C	ENSGT00940000156199.a.a.d	ENSGT00940000156173.k.a	ENSGT00940000155356.c.b.b	ENSGT00940000157802.v.b	ENSGT00940000158909
Atlantic salmon	MODERN SPECIES	14	ccdc71 (ENSSSAG00000061089)	ENSSSAG00000060934	nol8 (ENSSSAG00000060839)	ENSSSAG00000089807	ogna (ENSSSAG00000108887)	aspn (ENSSSAG00000101220)	ECM2 (ENSSSAG00000092173)	ENSSSAG00000087528	ippk (ENSSSAG00000060532)	si:dkey-42i9.4 (ENSSSAG00000096401)	ENSSSAG00000102491	atrip (ENSSSAG00000085098)	ENSSSAG00000102098	HEM1 (ENSSSAG00000059816) #21	POC1A (ENSSSAG00000059731)	ENSSSAG00000090219 ##22	RL29 (ENSSSAG00000047422)	iars1 (ENSSSAG00000044994)	ENSSSAG00000108332	ENSSSAG00000118875	ENSSSAG00000112229	atp2b2 (ENSSSAG00000066940)	slc6a11 (ENSSSAG00000058411)	slc6a1 (ENSSSAG00000058908) ##24	HRH1 (ENSSSAG00000092640)	ATG7 (ENSSSAG00000059670)	vgll4b (ENSSSAG00000097452) ##25	tamm41 (ENSSSAG00000044785)	ENSSSAG00000101870	PUSL1 (ENSSSAG00000094446)	ENSSSAG00000098650
River trout	MODERN SPECIES	7	pxk (ENSSTUG00000045147)	pdhb (ENSSTUG00000045240)	ccdc71 (ENSSTUG00000045439)	NISCH (ENSSTUG00000045443)	ENSSTUG00000045468	nol8 (ENSSTUG00000045474)	cenpp (ENSSTUG00000045488)	ogna (ENSSTUG00000045506)	aspn (ENSSTUG00000045523)	ippk (ENSSTUG00000045536)	si:dkey-42i9.4 (ENSSTUG00000045652)	atrip (ENSSTUG00000045675)	ENSSTUG00000045689	alas1 (ENSSTUG00000045702) #21	POC1A (ENSSTUG00000045727)	dusp7 (ENSSTUG00000045763) ##22	ENSSTUG00000045767	rpl29 (ENSSTUG00000045771)	iars1 (ENSSTUG00000045850)	ENSSTUG00000046691	atp2b2 (ENSSTUG00000046705)	SLC6A11 (ENSSTUG00000046750)	slc6a1b (ENSSTUG00000047060) ##24	HRH1 (ENSSTUG00000047184)	ATG7 (ENSSTUG00000047213)	vgll4b (ENSSTUG00000047575) ##25	tamm41 (ENSSTUG00000047582)	ENSSTUG00000047590	PUSL1 (ENSSTUG00000047593)	acap3b (ENSSTUG00000047629)	ENSSTUG00000048389
Otomorpha	ANCESTRAL SPECIES	29	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT00390000010053	ENSGT00950000182952.C.g.b	ENSGT00940000166455	ENSGT00940000166256	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000159798	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000013266	ENSGT00390000003839.a
Cyprinoidei	ANCESTRAL SPECIES	131		ENSGT00940000159891	ENSGT00940000159236	ENSGT00890000139515	ENSGT00940000154770	ENSGT00390000016619.b	ENSGT01050000244940.a.a	ENSGT00940000159587	ENSGT00940000161297	ENSGT00950000182905.a.a.b	ENSGT00390000017840	ENSGT00940000155330.c	ENSGT00390000015021	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569.l	ENSGT00940000156027.b ##24	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B.f ##25	ENSGT00390000000616	ENSGT00940000156062.m ##26	ENSGT00940000159798.g	ENSGT00940000159798.h	ENSGT00940000167517	ENSGT00940000158273	ENSGT00390000013266
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	668					ENSGT00940000159236.c	ENSGT00940000154770.ub	ENSGT00390000016619.b.u	ENSGT01050000244940.a.a.c	ENSGT01060000248861.d	ENSGT00940000159587.e	ENSGT00940000155330.c.i	ENSGT00390000015021.c	ENSGT01040000241985	ENSGT01100000264372	ENSGT00940000156030.j.c.b #21	ENSGT00940000157262.m.a.c ##22	ENSGT00390000007084.k
Cyprininae_a	ANCESTRAL SPECIES	507				ENSGT00500000044904.a.b.i.a.f.a.b	ENSGT00940000159236.c	ENSGT00940000154770.ub	ENSGT00390000016619.b.u	ENSGT01050000244940.a.a.c	ENSGT01060000248861.d	ENSGT00940000159587.e	ENSGT00940000155330.c.i	ENSGT00390000015021.c	ENSGT01040000241985	ENSGT01100000264372	ENSGT00940000156030.j.c.b #21	ENSGT00940000157262.m.a.c ##22	ENSGT00390000007084.k
Common carp reference	MODERN SPECIES	42	ENSCCRG00000082816	ENSCCRG00000063741	ENSCCRG00000077496	ENSCCRG00000014825	ENSCCRG00000008777	cdk4 (ENSCCRG00000060537)	nckap1l (ENSCCRG00000038627)	ENSCCRG00000027535	ENSCCRG00000027530	avil (ENSCCRG00000026812)	slc11a2 (ENSCCRG00000075091)	npffl (ENSCCRG00000047372)	ENSCCRG00000069641	ENSCCRG00000078831	alas1 (ENSCCRG00000057334) #21	dusp7 (ENSCCRG00000043913) ##22	rpl29 (ENSCCRG00000029869)	iars1 (ENSCCRG00000032926)	atp2b2 (ENSCCRG00000044404)	SLC6A11 (ENSCCRG00000016659)	slc6a1b (ENSCCRG00000016189) ##24	ENSCCRG00000075579	ENSCCRG00000072366	ENSCCRG00000068512	HRH1 (ENSCCRG00000082749)	ATG7 (ENSCCRG00000073737)	VGLL4 (ENSCCRG00000039243) ##25	tamm41 (ENSCCRG00000036889)	ENSCCRG00000039284	TIMP4 (ENSCCRG00000069980)	TIMP4 (ENSCCRG00000060473)
Goldfish	MODERN SPECIES	29	syn2b (ENSCARG00000022229)	tamm41 (ENSCARG00000022168)	vgll4b (ENSCARG00000022145) ##25	ATG7 (ENSCARG00000021718)	HRH1 (ENSCARG00000021671)	avil (ENSCARG00000021483)	SLC11A2 (ENSCARG00000021353)	npffl (ENSCARG00000021332)	ENSCARG00000021318	ENSCARG00000021306	ENSCARG00000021300	ENSCARG00000021281	ENSCARG00000021264	alas1 (ENSCARG00000021256) #21	ENSCARG00000021248	dusp7 (ENSCARG00000021227) ##22	ENSCARG00000021217	rpl29 (ENSCARG00000021201)	ENSCARG00000021195	ENSCARG00000021193	ENSCARG00000021190	ENSCARG00000021183	atp2b2 (ENSCARG00000020049)	ELMO2 (ENSCARG00000019910)	ENSCARG00000019897	cdk4 (ENSCARG00000019887)	nckap1l (ENSCARG00000018810)	ENSCARG00000018747	ENSCARG00000018734	ENSCARG00000018729	avil (ENSCARG00000043594)
Cyprininae	ANCESTRAL SPECIES	631							ENSGT01050000244940.a.a.d	ENSGT00940000159587.f	ENSGT00940000161297	ENSGT00950000182905.a.a.b	ENSGT00390000017840	ENSGT00940000155330.c.j	ENSGT00390000015021.d	ENSGT00940000156030.j.c.a #21	ENSGT00940000157494	ENSGT00940000157262.m.a.d ##22	ENSGT00390000007084.l	ENSGT00550000074921	ENSGT00940000166500.b	ENSGT00940000157569.l.b	ENSGT00940000156027.b.b ##24
Cyprininae_a	ANCESTRAL SPECIES	268	ENSGT00940000161664.b	ENSGT00390000016619.b.v	ENSGT00940000154770.tb	ENSGT00890000139515	ENSGT00940000159236.d	ENSGT00940000159891	ENSGT01050000244940.a.a.d	ENSGT00940000159587.f	ENSGT00940000161297	ENSGT00950000182905.a.a.b	ENSGT00390000017840	ENSGT00940000155330.c.j	ENSGT00390000015021.d	ENSGT00940000156030.j.c.a #21	ENSGT00940000157494	ENSGT00940000157262.m.a.d ##22	ENSGT00390000007084.l	ENSGT00550000074921.a	ENSGT00940000166500.b	ENSGT00940000157569.k	ENSGT00940000160690	ENSGT00390000017509.b	ENSGT00390000003282.B.f.d.a ##25	ENSGT00390000000616	ENSGT00940000159798.g.b	ENSGT00940000159798.h.a.b	ENSGT00940000167517.d	ENSGT00940000159798.h.b	ENSGT00940000158273.b	ENSGT00390000013266	ENSGT00950000183077.a.b
Common carp reference	MODERN SPECIES	13	cdk4 (ENSCCRG00000080202)	arfgap1 (ENSCCRG00000031335)	ENSCCRG00000056714	ENSCCRG00000039597	ENSCCRG00000063419	ENSCCRG00000033659	ENSCCRG00000058416	ENSCCRG00000021635	ENSCCRG00000074631	cyp27b1 (ENSCCRG00000061338)	mettl1 (ENSCCRG00000034852)	slc11a2 (ENSCCRG00000058721)	npffl (ENSCCRG00000077727)	alas1 (ENSCCRG00000047361) #21	POC1A (ENSCCRG00000072953)	dusp7 (ENSCCRG00000054563) ##22	rpl29 (ENSCCRG00000007746)	iars1 (ENSCCRG00000029865)	atp2b2 (ENSCCRG00000009632)	SLC6A11 (ENSCCRG00000064612)	slc6a1b (ENSCCRG00000066274) ##24	ATG7 (ENSCCRG00000069201)	vgll4b (ENSCCRG00000081211) ##25	ENSCCRG00000065400	ENSCCRG00000080358	TIMP4 (ENSCCRG00000058279)	ENSCCRG00000075001	ENSCCRG00000054276	TIMP4 (ENSCCRG00000067355)	ENSCCRG00000028460	MKRN2OS (ENSCCRG00000080573)
Golden-line barbel	MODERN SPECIES	1593														ENSSGRG00000024900	alas1 (ENSSGRG00000024899) #21	dusp7 (ENSSGRG00000024892) ##22	rpl29 (ENSSGRG00000024890)
Goldfish	MODERN SPECIES	52	ENSCARG00000068809	pdrg1 (ENSCARG00000068810)	ENSCARG00000068813	ENSCARG00000068818	PPP1R3D (ENSCARG00000068822)	phactr3b (ENSCARG00000068828)	TMBIM6 (ENSCARG00000068855)	avil (ENSCARG00000068899)	ENSCARG00000069091	cyp27b1 (ENSCARG00000069123)	mettl1 (ENSCARG00000069160)	slc11a2 (ENSCARG00000069203)	npffl (ENSCARG00000069398)	alas1 (ENSCARG00000069403) #21	POC1A (ENSCARG00000069417)	dusp7 (ENSCARG00000069451) ##22	rpl29 (ENSCARG00000069456)	iars1 (ENSCARG00000069474)
Zebrafish	MODERN SPECIES	2	raf1b (ENSDARG00000059406) #27	cnbpb (ENSDARG00000070922) #28	isy1 (ENSDARG00000063466)	zgc:77375 (ENSDARG00000004282) #29	rab43 (ENSDARG00000059404)	nuf2 (ENSDARG00000034624)	znf831 (ENSDARG00000074906)	ENSDARG00000109591	pdrg1 (ENSDARG00000045017)	cyp27b1 (ENSDARG00000045015)	POC1A (ENSDARG00000078533)	mettl1 (ENSDARG00000076518)	slc11a2 (ENSDARG00000024295)	npffl (ENSDARG00000045016)	alas1 (ENSDARG00000021059) #21	dusp7 (ENSDARG00000101413) ##22	avil (ENSDARG00000059342)	TMBIM6 (ENSDARG00000077934)	nckap1l (ENSDARG00000075748)	cdk4 (ENSDARG00000087937)	arfgap1 (ENSDARG00000101616)	elmo2 (ENSDARG00000063527)	ENSDARG00000109859	col2a1b (ENSDARG00000011407)	sp1 (ENSDARG00000088347)	ENSDARG00000086216	myg1 (ENSDARG00000069977)
Characiphysae	ANCESTRAL SPECIES	116	ENSGT00940000158250.d.a.d	ENSGT00390000004897	ENSGT00940000158988.a.b	ENSGT00940000161023.a	ENSGT00940000161087.i.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000156458.e.b	ENSGT00940000164283.b.b	ENSGT01050000244890.a.b.b.c.a	ENSGT00940000155250.q.b	ENSGT01070000253744.a.a.a.a	ENSGT00940000157899.a.a	ENSGT00940000154578.A.c.b.c	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT01050000244940.a.a	ENSGT00940000159587	ENSGT01040000240451.a.b.a	ENSGT00940000155330.c.g	ENSGT00940000161297	ENSGT00950000182905.a.a.b	ENSGT00390000017840	ENSGT00940000158208.a.b	ENSGT00940000154770	ENSGT00940000160351	ENSGT00940000158956.d	ENSGT00400000022103.b	ENSGT00890000139515	ENSGT00940000159236
Channel catfish	MODERN SPECIES	13	hoxc11 (ENSIPUG00000001956)	hoxc12 (ENSIPUG00000001950)	hoxc13b (ENSIPUG00000001930)	calcoco1b (ENSIPUG00000001901)	rarg (ENSIPUG00000001875)	nr1d4b (ENSIPUG00000001852)	ENSIPUG00000001842	ENSIPUG00000001757	ENSIPUG00000001723	LRP1 (ENSIPUG00000001367)	ENSIPUG00000001311	ENSIPUG00000001299	ENSIPUG00000001291 #21	alas1 (ENSIPUG00000001269) #21	POC1A (ENSIPUG00000001227)	dusp7 (ENSIPUG00000001214) ##22	rpl29 (ENSIPUG00000001196)	tnnc1 (ENSIPUG00000001174) ##23	ENSIPUG00000001164	tmbim6 (ENSIPUG00000001131)	ENSIPUG00000001124	avil (ENSIPUG00000001112)	CTDSP2 (ENSIPUG00000001095)	ENSIPUG00000001080	AGAP2 (ENSIPUG00000001023)	tspan31 (ENSIPUG00000001004)	cdk4 (ENSIPUG00000000970)	mettl1 (ENSIPUG00000000954)	cyp27b1 (ENSIPUG00000000936)	ENSIPUG00000000933	slc11a2 (ENSIPUG00000000883)
Characiphysae_b	ANCESTRAL SPECIES	122	ENSGT00940000158250.d.a.d	ENSGT00390000004897	ENSGT00940000158988.a.b	ENSGT00940000161023.a	ENSGT00940000161087.i.b	ENSGT00950000183025.b.b.e.b	ENSGT00940000156458.e.b	ENSGT00940000164283.b.b	ENSGT01050000244890.a.b.b.c.a	ENSGT00940000155250.q.b	ENSGT01070000253744.a.a.a.a	ENSGT00940000157899.a.a	ENSGT00940000154578.A.c.b.c	ENSGT00940000156030.j #21	ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00390000002215.j	ENSGT01050000244940.a.a	ENSGT00940000159587	ENSGT01040000240451.a.b.a	ENSGT00940000154276	ENSGT00940000155330.c.g	ENSGT00940000161297	ENSGT00950000182905.a.a.b	ENSGT00390000017840	ENSGT00940000158208.a.b	ENSGT00940000154770	ENSGT00940000160351	ENSGT00940000158956.d	ENSGT00400000022103.b
Characoidei	ANCESTRAL SPECIES	299															ENSGT00940000157494	ENSGT00940000157262.m.a ##22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00390000002215.j	ENSGT01050000244940.a.a	ENSGT00940000159587	ENSGT01040000240451.a.b.a	ENSGT00940000154276	ENSGT00940000155330.c.g	ENSGT00940000161297
Mexicana tetra	MODERN SPECIES	14	ENSAMXG00000040289	nckap1l (ENSAMXG00000024691)	ENSAMXG00000030865	npffl (ENSAMXG00000033520)	ITGA7 (ENSAMXG00000024694)	ELMO2 (ENSAMXG00000024695)	arfgap1 (ENSAMXG00000038178)	ENSAMXG00000035874	AGAP2 (ENSAMXG00000024698)	ENSAMXG00000029780	cdk4 (ENSAMXG00000043568)	ENSAMXG00000029335	mettl1 (ENSAMXG00000041151)	cyp27b1 (ENSAMXG00000029720)	POC1A (ENSAMXG00000024703)	dusp7 (ENSAMXG00000031983) ##22	rpl29 (ENSAMXG00000038794)	tnnc1a (ENSAMXG00000024706) ##23	ENSAMXG00000024707	ENSAMXG00000038563	TMBIM6 (ENSAMXG00000036420)	avil (ENSAMXG00000024710)	ctdsp2 (ENSAMXG00000024711)	HIGD1A (ENSAMXG00000038553)	slc11a2 (ENSAMXG00000024713)	EEF1AKMT3 (ENSAMXG00000041662)	ENSAMXG00000029783	alas1 (ENSAMXG00000024715) #21	ENSAMXG00000040633	ENSAMXG00000036182	ENSAMXG00000038302
Electric eel	MODERN SPECIES	284								nr1d4b (ENSEEEG00000023484)	ENSEEEG00000023480	ENSEEEG00000023476	ENSEEEG00000023474	LRP1 (ENSEEEG00000023464)	ENSEEEG00000023457	ALAS1 (ENSEEEG00000023451) #21	POC1A (ENSEEEG00000023447)	dusp7 (ENSEEEG00000023443) ##22	rpl29 (ENSEEEG00000023440)	tnnc1a (ENSEEEG00000023423) ##23	ENSEEEG00000023418	ENSEEEG00000023416	ENSEEEG00000023414	tas1r3 (ENSEEEG00000023408)	odad1 (ENSEEEG00000023407)	ENSEEEG00000023406	ENSEEEG00000023405	MMEL1 (ENSEEEG00000023403)	ENSEEEG00000023401	tnfrsf1b (ENSEEEG00000023400)	TRIM62 (ENSEEEG00000023399)
Denticle herring	MODERN SPECIES	3	ENSDCDG00000034827	NISCH (ENSDCDG00000034838)	ENSDCDG00000034866	nol8 (ENSDCDG00000034869)	cenpp (ENSDCDG00000034872)	ogna (ENSDCDG00000034876)	OMD (ENSDCDG00000034879)	aspn (ENSDCDG00000034880)	ECM2 (ENSDCDG00000034882)	ippk (ENSDCDG00000034886)	si:dkey-42i9.4 (ENSDCDG00000034890)	atrip (ENSDCDG00000034891)	shisa10.1 (ENSDCDG00000034893)	ALAS1 (ENSDCDG00000034894) #21	ENSDCDG00000034901	dusp7 (ENSDCDG00000034902) ##22	rpl29 (ENSDCDG00000034906)	ENSDCDG00000034913 ##23	iars1 (ENSDCDG00000034943)	atp2b2 (ENSDCDG00000034974)	SLC6A11 (ENSDCDG00000035032)	slc6a1b (ENSDCDG00000035164) ##24	HRH1 (ENSDCDG00000035297)	ATG7 (ENSDCDG00000035327)	vgll4b (ENSDCDG00000035408) ##25	tamm41 (ENSDCDG00000035411)	syn2b (ENSDCDG00000035419)	tamm41 (ENSDCDG00000016077)	timp4.2 (ENSDCDG00000016082)	PPARG (ENSDCDG00000016087)	tsen2 (ENSDCDG00000016127)
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000157262.n ##22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000157262.n ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00940000157262.n ##22
Otomorpha	ANCESTRAL SPECIES	26			ENSGT00940000157506.f	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000164454	ENSGT00940000155094.b	ENSGT00950000182835.c.c.g.b	ENSGT00940000162980	ENSGT00950000182994.B.a.a.a.d.b	ENSGT00940000156650.i	ENSGT00950000182994.B.a.a.a.d.a	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n ##22	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00950000183041.A.a.b #28	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000157709.j	ENSGT00940000153776.a.b	ENSGT00940000159708
Clupeiformes	ANCESTRAL SPECIES	298								ENSGT00940000157506.f	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000164454	ENSGT00950000182994.B.a.a.a.d.a	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n ##22	ENSGT00940000157262.m.b #22	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00950000183041.A.a.b #28	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33
Atlantic herring	MODERN SPECIES	21	timp4.2 (ENSCHAG00000017406)	tamm41 (ENSCHAG00000017413)	vgll4b (ENSCHAG00000017431) ##25	ATG7 (ENSCHAG00000017457)	HRH1 (ENSCHAG00000017743)	slc6a1b (ENSCHAG00000017782) ##24	SLC6A11 (ENSCHAG00000018702)	atp2b2 (ENSCHAG00000019399)	iars1 (ENSCHAG00000019757)	tnnc1a (ENSCHAG00000019978) ##23	rpl29 (ENSCHAG00000020005)	dusp7 (ENSCHAG00000020030) ##22	POC1A (ENSCHAG00000020096)	alas1 (ENSCHAG00000020253) #21	POC1A (ENSCHAG00000020449)	ENSCHAG00000020545 ##22	alas1 (ENSCHAG00000020568) #21	ENSCHAG00000020974	atrip (ENSCHAG00000020986)	ENSCHAG00000020995	ippk (ENSCHAG00000021008)	cenpp (ENSCHAG00000021024)	ENSCHAG00000021044	aspn (ENSCHAG00000021056)	ogna (ENSCHAG00000021204)	nol8 (ENSCHAG00000021212)	ENSCHAG00000021222	NISCH (ENSCHAG00000021242)	stab1 (ENSCHAG00000021441)	ccdc71 (ENSCHAG00000021581)	pdhb (ENSCHAG00000021595)
Denticle herring	MODERN SPECIES	1	ZBTB46 (ENSDCDG00000030084)	UCKL1 (ENSDCDG00000030026)	ZNF512B (ENSDCDG00000030002)	SAMD10 (ENSDCDG00000029996)	prpf6 (ENSDCDG00000029824)	aar2 (ENSDCDG00000029802)	ebp (ENSDCDG00000029785)	ccdc115 (ENSDCDG00000029779)	ENSDCDG00000029778	apobec2b (ENSDCDG00000029776)	oard1 (ENSDCDG00000029775)	gdi1 (ENSDCDG00000029746)	ENSDCDG00000029641	tafazzin (ENSDCDG00000029585)	atp6ap1a (ENSDCDG00000029578)	ENSDCDG00000029572 ##22	ENSDCDG00000029564 #23	slc6a1a (ENSDCDG00000028568) #24	VGLL4 (ENSDCDG00000028538) #25	syn2a (ENSDCDG00000028170) #26	raf1a (ENSDCDG00000028058) #27	cnbpa (ENSDCDG00000028049) #28	ENSDCDG00000028047 #30	IQSEC1 (ENSDCDG00000027970) #31	NUP210 (ENSDCDG00000027237) #32	FBLN2 (ENSDCDG00000027122) #33	guca1b (ENSDCDG00000027117)	ENSDCDG00000027116	ENSDCDG00000027115	USP19 (ENSDCDG00000022772)	lamb2 (ENSDCDG00000013139)
Otophysi	ANCESTRAL SPECIES	115	ENSGT00940000159695	ENSGT00940000156010.db #11	ENSGT00390000011620.a.a.b.f #10	ENSGT00940000158073.a #9	ENSGT00940000155141.x	ENSGT00940000160902.c.b #8	ENSGT00390000018730.A.e #7	ENSGT00940000161930	ENSGT00390000002821	ENSGT00940000155614.i.a	ENSGT00950000182835.c.c.g.a	ENSGT00940000164454	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n ##22	ENSGT00940000158342.a.a	ENSGT00940000153541.A #23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00950000183041.A.a.b #28	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000156091.a	ENSGT00940000153776.a.b
Characiphysae	ANCESTRAL SPECIES	73												ENSGT00950000182994.B.a.a.a.d.a	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n ##22	ENSGT00940000153541.D ##23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00950000183041.A.a.b #28	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000156091.a	ENSGT00940000153776.a.b	ENSGT00940000159708
Characiphysae_b	ANCESTRAL SPECIES	77	ENSGT00940000157172	ENSGT00940000159659.d.a.c	ENSGT00940000156977.f	ENSGT00950000183042.b.a	ENSGT00940000161154.b	ENSGT00940000164454	ENSGT00940000161109.t	ENSGT00940000156478	ENSGT00490000043415.k.a	ENSGT00940000157549.b	ENSGT00950000182973.a.c.a.d	ENSGT00950000182994.B.a.a.a.d.a	ENSGT00940000167069	ENSGT00390000018621	ENSGT00940000156650.j	ENSGT00940000157262.n ##22	ENSGT00940000153541.D ##23	ENSGT00940000156027.a #24	ENSGT00390000003282.B.e #25	ENSGT00940000156062.n #26	ENSGT00940000156084 #27	ENSGT00950000183041.A.a.b #28	ENSGT00530000064244.a #30	ENSGT00940000156915.f.a #31	ENSGT00390000009491.d #32	ENSGT00940000156047.b #33	ENSGT00940000158523.c.a #35	ENSGT00940000162955 #36	ENSGT00940000164549.a.a #37	ENSGT00940000156091.a	ENSGT00940000153776.a.b
Electric eel	MODERN SPECIES	54				ENSEEEG00000009951	CHST13 (ENSEEEG00000009928)	ENSEEEG00000009924	ID1 (ENSEEEG00000009919)	hm13 (ENSEEEG00000009908)	ILRUN (ENSEEEG00000009902)	SPDEF (ENSEEEG00000009896)	pacsin1a (ENSEEEG00000009894)	gdi1 (ENSEEEG00000009844)	ENSEEEG00000009841	tafazzin (ENSEEEG00000009836)	atp6ap1a (ENSEEEG00000009833)	DUSP7 (ENSEEEG00000009828) ##22	ENSEEEG00000009762 ##23	slc6a1a (ENSEEEG00000009746) #24	VGLL4 (ENSEEEG00000009744) #25	syn2a (ENSEEEG00000009732) #26	raf1a (ENSEEEG00000009503) #27	cnbpa (ENSEEEG00000009483) #28	ENSEEEG00000009481 #30	IQSEC1 (ENSEEEG00000009053) #31	NUP210 (ENSEEEG00000008993) #32	FBLN2 (ENSEEEG00000008980) #33	WNT7A (ENSEEEG00000008978) #35	zgc:171857 (ENSEEEG00000008977) #36	adtrp1 (ENSEEEG00000008976)	mybl2a (ENSEEEG00000008975)	sgk2a (ENSEEEG00000008927)
Reedfish	MODERN SPECIES	9	ENSECRG00000022572	prkar2ab (ENSECRG00000022562)	slc25a20 (ENSECRG00000022552)	arih2 (ENSECRG00000022538)	impdh2 (ENSECRG00000022517)	ndufaf3 (ENSECRG00000022501)	dalrd3 (ENSECRG00000022492)	CELSR3 (ENSECRG00000022451)	NCKIPSD (ENSECRG00000022425)	wdr6 (ENSECRG00000022415)	ENSECRG00000022363	ENSECRG00000022339	ENSECRG00000022330	p4htma (ENSECRG00000022321)	POC1A (ENSECRG00000022313)	dusp7 (ENSECRG00000022292) #22	rpl29 (ENSECRG00000022275)	ENSECRG00000022262 ##23	NISCH (ENSECRG00000022245)	ENSECRG00000022235	stab1 (ENSECRG00000022201)	DCP1A (ENSECRG00000022185)	cacna1da (ENSECRG00000021519)	CHDH (ENSECRG00000021278)	IL17RB (ENSECRG00000021243)	actr8 (ENSECRG00000021182)	selenok (ENSECRG00000021164)	parapinopsinb (ENSECRG00000020782)	LRTM1 (ENSECRG00000020699)	CACNA2D3 (ENSECRG00000020601)	wnt5a (ENSECRG00000020392)
Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT00550000074921	ENSGT00620000089227	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238	ENSGT00940000160986	ENSGT00940000157444	ENSGT00940000159941	ENSGT01030000235189	ENSGT00390000010053	ENSGT00950000182952.C	ENSGT00390000012850	ENSGT00390000008296.b.a.b	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.D ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448
Tetrapoda	ANCESTRAL SPECIES	182														ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a
Amniota	ANCESTRAL SPECIES	42							ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.C.b	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561	ENSGT00390000007160.a.a
Mammalia	ANCESTRAL SPECIES	63						ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561	ENSGT00390000007160.a.a	ENSGT00940000155514
Theria	ANCESTRAL SPECIES	39	ENSGT00390000013390	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.a.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000163875	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561
Opossum	MODERN SPECIES	5	ENSMODG00000011444	TNNC1 (ENSMODG00000044798) ##23	SEMA3G (ENSMODG00000011476)	PHF7 (ENSMODG00000011485)	BAP1 (ENSMODG00000011521)	DNAH1 (ENSMODG00000011579)	GLYCTK (ENSMODG00000011601)	ENSMODG00000011614	PPM1M (ENSMODG00000011632)	TWF2 (ENSMODG00000011648)	ENSMODG00000040085	ENSMODG00000011665	ENSMODG00000011675 #21	POC1A (ENSMODG00000011717)	ENSMODG00000011728	DUSP7 (ENSMODG00000011736) #22	ENSMODG00000047288	ACY1 (ENSMODG00000011771)	ABHD14A (ENSMODG00000011780)	ABHD14B (ENSMODG00000011782)	PCBP4 (ENSMODG00000037691)	GPR62 (ENSMODG00000011797)	PARP3 (ENSMODG00000011807)	RRP9 (ENSMODG00000011815)	ENSMODG00000038121	TEX264 (ENSMODG00000011827)	RAD54L2 (ENSMODG00000011850)	DCAF1 (ENSMODG00000011890)	ENSMODG00000011909	DOCK3 (ENSMODG00000011954)	ENSMODG00000012224
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.a.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000163875	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.a.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000163875	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.a.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000163875	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561
koala	DUPLICATION
koala	MODERN SPECIES	75																ENSPCIG00000030828 #22	ENSPCIG00000018155	ACY1 (ENSPCIG00000018154)	ABHD14A (ENSPCIG00000018153)	ABHD14B (ENSPCIG00000018152)	PCBP4 (ENSPCIG00000018151)	GPR62 (ENSPCIG00000018150)	PARP3 (ENSPCIG00000018149)	RRP9 (ENSPCIG00000018148)	ENSPCIG00000018147	ENSPCIG00000018146	GRM2 (ENSPCIG00000018145)	TEX264 (ENSPCIG00000018144)	RAD54L2 (ENSPCIG00000018143)	DCAF1 (ENSPCIG00000023152)	ENSPCIG00000023151
koala	MODERN SPECIES	215	ENSPCIG00000018306	ENSPCIG00000033826	TNNC1 (ENSPCIG00000018298) ##23	SEMA3G (ENSPCIG00000018296)	PHF7 (ENSPCIG00000018272)	BAP1 (ENSPCIG00000018268)	DNAH1 (ENSPCIG00000018182)	GLYCTK (ENSPCIG00000018172)	ENSPCIG00000018170	ENSPCIG00000031420	TWF2 (ENSPCIG00000018168)	ENSPCIG00000018167	TLR9 (ENSPCIG00000018166)	ALAS1 (ENSPCIG00000018165) #21	POC1A (ENSPCIG00000018160)	ENSPCIG00000036194 #22
Common wonbat	MODERN SPECIES	1056	NT5DC2 (ENSVURG00010015434)	STAB1 (ENSVURG00010015546)	ENSVURG00010016861	ENSVURG00010016868	ENSVURG00010016874	BAP1 (ENSVURG00010016879)	DNAH1 (ENSVURG00010016900)	GLYCTK (ENSVURG00010016940)	ENSVURG00010016950	PPM1M (ENSVURG00010016961)	TWF2 (ENSVURG00010016977)	ENSVURG00010016999	ENSVURG00010017053	ALAS1 (ENSVURG00010017058) #21	POC1A (ENSVURG00010017083)	DUSP7 (ENSVURG00010017107) #22	ACY1 (ENSVURG00010017138)	ABHD14A (ENSVURG00010017316)	ABHD14B (ENSVURG00010017326)	PCBP4 (ENSVURG00010017344)	GPR62 (ENSVURG00010017388)	PARP3 (ENSVURG00010017398)	RRP9 (ENSVURG00010017410)	ENSVURG00010017421	GRM2 (ENSVURG00010017428)	ENSVURG00010017442	TEX264 (ENSVURG00010017452)	RAD54L2 (ENSVURG00010017489)	DCAF1 (ENSVURG00010017525)	MANF (ENSVURG00010017583)	DOCK3 (ENSVURG00010017605)
Wallaby	MODERN SPECIES	6935																DUSP7 (ENSMEUG00000014883) #22
Tasmanian devil	MODERN SPECIES		STAB1 (ENSSHAG00000008227)	NISCH (ENSSHAG00000008768)	TNNC1 (ENSSHAG00000009252) ##23	SEMA3G (ENSSHAG00000031866)	PHF7 (ENSSHAG00000009297)	BAP1 (ENSSHAG00000009571)	DNAH1 (ENSSHAG00000002401)	GLYCTK (ENSSHAG00000000848)	ENSSHAG00000026928	PPM1M (ENSSHAG00000002110)	TWF2 (ENSSHAG00000002923)	ENSSHAG00000029225	ENSSHAG00000004018	ALAS1 (ENSSHAG00000021735) #21	POC1A (ENSSHAG00000001263)	DUSP7 (ENSSHAG00000021178) #22	ENSSHAG00000006854	ACY1 (ENSSHAG00000006953)	ABHD14A (ENSSHAG00000024108)	PCBP4 (ENSSHAG00000028066)	PARP3 (ENSSHAG00000007455)	RRP9 (ENSSHAG00000007762)	GRM2 (ENSSHAG00000026464)	ENSSHAG00000028310	TEX264 (ENSSHAG00000025327)	RAD54L2 (ENSSHAG00000029799)	DCAF1 (ENSSHAG00000010496)	RBM15B (ENSSHAG00000010976)	MANF (ENSSHAG00000027726)	DOCK3 (ENSSHAG00000011214)	MAPKAPK3 (ENSSHAG00000018944)
Eutheria	ANCESTRAL SPECIES	14	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Atlantogenata	ANCESTRAL SPECIES	56	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.b.a
Afrotheria	ANCESTRAL SPECIES	63	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a
Afrotheria_a	ANCESTRAL SPECIES	61	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a
Elephant	MODERN SPECIES	49	NT5DC2 (ENSLAFG00000013916)	STAB1 (ENSLAFG00000013893)	NISCH (ENSLAFG00000017761)	TNNC1 (ENSLAFG00000017754) ##23	SEMA3G (ENSLAFG00000008579)	PHF7 (ENSLAFG00000006339)	BAP1 (ENSLAFG00000006332)	DNAH1 (ENSLAFG00000023232)	GLYCTK (ENSLAFG00000008525)	WDR82 (ENSLAFG00000028309)	PPM1M (ENSLAFG00000017432)	TWF2 (ENSLAFG00000021926)	TLR9 (ENSLAFG00000002993)	ALAS1 (ENSLAFG00000002991) #21	POC1A (ENSLAFG00000028434)	DUSP7 (ENSLAFG00000021627) #22	RPL29 (ENSLAFG00000005757)	ACY1 (ENSLAFG00000005752)	ABHD14A (ENSLAFG00000005747)	ABHD14B (ENSLAFG00000022086)	PCBP4 (ENSLAFG00000010732)	GPR62 (ENSLAFG00000010735)	PARP3 (ENSLAFG00000005740)	RRP9 (ENSLAFG00000016625)	ENSLAFG00000020532	IQCF2 (ENSLAFG00000005729)	ENSLAFG00000030425	GRM2 (ENSLAFG00000000672)	TEX264 (ENSLAFG00000005969)	RAD54L2 (ENSLAFG00000005966)	DCAF1 (ENSLAFG00000012675)
Hyrax	MODERN SPECIES	11580													TWF2 (ENSPCAG00000018889)	ALAS1 (ENSPCAG00000002056) #21	POC1A (ENSPCAG00000002118)	DUSP7 (ENSPCAG00000002164) #22
Xenarthra	ANCESTRAL SPECIES	447																ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.b.a
Armadillo	MODERN SPECIES	2275																DUSP7 (ENSDNOG00000031488) #22	RPL29 (ENSDNOG00000048459)	ACY1 (ENSDNOG00000035615)	ABHD14B (ENSDNOG00000030937)	PCBP4 (ENSDNOG00000033951)	GPR62 (ENSDNOG00000034704)	ENSDNOG00000042037
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Primates	ANCESTRAL SPECIES	1	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Lemuriformes	ANCESTRAL SPECIES	17	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Mouse lemur	MODERN SPECIES	5	NT5DC2 (ENSMICG00000028554)	STAB1 (ENSMICG00000002842)	NISCH (ENSMICG00000002831)	TNNC1 (ENSMICG00000002829) ##23	SEMA3G (ENSMICG00000002820)	PHF7 (ENSMICG00000002810)	BAP1 (ENSMICG00000002801)	DNAH1 (ENSMICG00000002743)	GLYCTK (ENSMICG00000030257)	WDR82 (ENSMICG00000002732)	ENSMICG00000002725	TWF2 (ENSMICG00000002719)	TLR9 (ENSMICG00000002716)	ALAS1 (ENSMICG00000002714) #21	POC1A (ENSMICG00000002709)	DUSP7 (ENSMICG00000002706) #22	ENSMICG00000045877	ACY1 (ENSMICG00000002700)	ABHD14A (ENSMICG00000047989)	ABHD14B (ENSMICG00000002695)	PCBP4 (ENSMICG00000002686)	GPR62 (ENSMICG00000037214)	PARP3 (ENSMICG00000017294)	RRP9 (ENSMICG00000017291)	IQCF1 (ENSMICG00000028785)	IQCF5 (ENSMICG00000036795)	IQCF2 (ENSMICG00000011056)	ENSMICG00000044897	IQCF3 (ENSMICG00000038218)	IQCF6 (ENSMICG00000027112)	GRM2 (ENSMICG00000002788)
Lemuriformes_a	ANCESTRAL SPECIES	6	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Coquerels sifaka	MODERN SPECIES	50	STAB1 (ENSPCOG00000013257)	NISCH (ENSPCOG00000019182)	TNNC1 (ENSPCOG00000002063) ##23	SEMA3G (ENSPCOG00000015103)	ENSPCOG00000014149	BAP1 (ENSPCOG00000026505)	ENSPCOG00000014931	DNAH1 (ENSPCOG00000025308)	GLYCTK (ENSPCOG00000017281)	WDR82 (ENSPCOG00000013388)	PPM1M (ENSPCOG00000020890)	TWF2 (ENSPCOG00000017085)	TLR9 (ENSPCOG00000014709)	ALAS1 (ENSPCOG00000028000) #21	POC1A (ENSPCOG00000012625)	DUSP7 (ENSPCOG00000026200) #22	RPL29 (ENSPCOG00000020127)	ACY1 (ENSPCOG00000021542)	ABHD14A (ENSPCOG00000014790)	ABHD14B (ENSPCOG00000009069)	PCBP4 (ENSPCOG00000027535)	GPR62 (ENSPCOG00000014572)	PARP3 (ENSPCOG00000014233)	RRP9 (ENSPCOG00000025565)	IQCF1 (ENSPCOG00000027949)	IQCF5 (ENSPCOG00000014565)	IQCF2 (ENSPCOG00000014478)	IQCF3 (ENSPCOG00000015522)	IQCF6 (ENSPCOG00000006482)	GRM2 (ENSPCOG00000015151)	TEX264 (ENSPCOG00000014904)
Greater bamboo lemur	MODERN SPECIES	121	ENSPSMG00000005841	STAB1 (ENSPSMG00000005864)	NISCH (ENSPSMG00000005935)	TNNC1 (ENSPSMG00000006022) ##23	SEMA3G (ENSPSMG00000006031)	PHF7 (ENSPSMG00000006086)	BAP1 (ENSPSMG00000006130)	DNAH1 (ENSPSMG00000006181)	GLYCTK (ENSPSMG00000006196)	WDR82 (ENSPSMG00000006205)	PPM1M (ENSPSMG00000006238)	TWF2 (ENSPSMG00000006269)	TLR9 (ENSPSMG00000006301)	ALAS1 (ENSPSMG00000006328) #21	POC1A (ENSPSMG00000006396)	DUSP7 (ENSPSMG00000006439) #22	ACY1 (ENSPSMG00000006695)	ABHD14B (ENSPSMG00000007242)	PCBP4 (ENSPSMG00000007372)	GPR62 (ENSPSMG00000007472)	PARP3 (ENSPSMG00000007484)	RRP9 (ENSPSMG00000007539)	IQCF1 (ENSPSMG00000007557)	IQCF5 (ENSPSMG00000007562)	IQCF2 (ENSPSMG00000007575)	IQCF3 (ENSPSMG00000007586)	ENSPSMG00000007600	IQCF6 (ENSPSMG00000007610)	GRM2 (ENSPSMG00000007638)	TEX264 (ENSPSMG00000007688)	RAD54L2 (ENSPSMG00000007734)
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	347															ENSOGAG00000010602	ENSOGAG00000004330 #22	HAPSTR1 (ENSOGAG00000003909)	ENSOGAG00000011180	USP7 (ENSOGAG00000014709)	CARHSP1 (ENSOGAG00000014708)	ENSOGAG00000016560	TMEM186 (ENSOGAG00000016556)	ENSOGAG00000016546	ENSOGAG00000024625	METTL22 (ENSOGAG00000001069)	ENSOGAG00000027047
Bushbaby	MODERN SPECIES	131	ENSOGAG00000033483	ENSOGAG00000002610	ENSOGAG00000025602	TEDDM1 (ENSOGAG00000030946)	GLUL (ENSOGAG00000025474)	ZNF648 (ENSOGAG00000029868)	ENSOGAG00000015098	CACNA1E (ENSOGAG00000001113)	IER5 (ENSOGAG00000033386)	ENSOGAG00000010435	STX6 (ENSOGAG00000010434)	ENSOGAG00000028147	ENSOGAG00000010432	XPR1 (ENSOGAG00000002019)	ACBD6 (ENSOGAG00000016067)	ENSOGAG00000033538 #22	LHX4 (ENSOGAG00000016064)	QSOX1 (ENSOGAG00000016062)	CEP350 (ENSOGAG00000016060)	TOR1AIP1 (ENSOGAG00000016452)	TOR1AIP2 (ENSOGAG00000016660)	FAM163A (ENSOGAG00000029431)	TDRD5 (ENSOGAG00000008026)	NPHS2 (ENSOGAG00000008024)	AXDND1 (ENSOGAG00000008019)	SOAT1 (ENSOGAG00000012035)	ABL2 (ENSOGAG00000012757)	TOR3A (ENSOGAG00000012754)	FAM20B (ENSOGAG00000012751)	RALGPS2 (ENSOGAG00000014797)	ANGPTL1 (ENSOGAG00000014804)
Bushbaby	MODERN SPECIES	260	WSCD1 (ENSOGAG00000016766)	AIPL1 (ENSOGAG00000000059)	PIMREG (ENSOGAG00000027433)	PITPNM3 (ENSOGAG00000009255)	KIAA0753 (ENSOGAG00000015272)	MED31 (ENSOGAG00000016933)	SLC13A5 (ENSOGAG00000016935)	XAF1 (ENSOGAG00000033395)	FBXO39 (ENSOGAG00000016939)	TEKT1 (ENSOGAG00000016943)	SMTNL2 (ENSOGAG00000002826)	GGT6 (ENSOGAG00000009001)	MYBBP1A (ENSOGAG00000008993)	SPNS2 (ENSOGAG00000008988)	SPNS3 (ENSOGAG00000008985)	ENSOGAG00000034917 #22	UBE2G1 (ENSOGAG00000008795)	ANKFY1 (ENSOGAG00000008786)	CYB5D2 (ENSOGAG00000004724)	ZZEF1 (ENSOGAG00000008822)	ATP2A3 (ENSOGAG00000008815)	P2RX1 (ENSOGAG00000008812)	NCBP3 (ENSOGAG00000008803)	ITGAE (ENSOGAG00000008794)	HASPIN (ENSOGAG00000031439)	P2RX5 (ENSOGAG00000034788)	EMC6 (ENSOGAG00000004452)	TAX1BP3 (ENSOGAG00000027420)	CTNS (ENSOGAG00000004450)	SHPK (ENSOGAG00000004449)	TRPV1 (ENSOGAG00000004445)
Bushbaby	MODERN SPECIES	147	UQCC5 (ENSOGAG00000004088)	NT5DC2 (ENSOGAG00000004086)	STAB1 (ENSOGAG00000004077)	NISCH (ENSOGAG00000004076)	TNNC1 (ENSOGAG00000004074) ##23	SEMA3G (ENSOGAG00000004073)	PHF7 (ENSOGAG00000012060)	ENSOGAG00000012056	DNAH1 (ENSOGAG00000012038)	GLYCTK (ENSOGAG00000016035)	WDR82 (ENSOGAG00000016032)	PPM1M (ENSOGAG00000016027)	TLR9 (ENSOGAG00000016022)	ALAS1 (ENSOGAG00000016020) #21	POC1A (ENSOGAG00000032245)	ENSOGAG00000032809 #22	ENSOGAG00000013766	ACY1 (ENSOGAG00000014615)	ABHD14A (ENSOGAG00000033376)	PCBP4 (ENSOGAG00000032384)	GPR62 (ENSOGAG00000027658)	PARP3 (ENSOGAG00000011207)	RRP9 (ENSOGAG00000011204)	IQCF1 (ENSOGAG00000012407)	IQCF5 (ENSOGAG00000032193)	IQCF2 (ENSOGAG00000003199)	IQCF3 (ENSOGAG00000003197)	ENSOGAG00000031718	IQCF6 (ENSOGAG00000025728)	ENSOGAG00000034325	GRM2 (ENSOGAG00000012449)
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Tarsier	MODERN SPECIES	4334															POC1A (ENSTSYG00000008302)	DUSP7 (ENSTSYG00000034538) #22	RPL29 (ENSTSYG00000035178)	ACY1 (ENSTSYG00000011109)	ABHD14A (ENSTSYG00000011106)	ABHD14B (ENSTSYG00000035021)	PCBP4 (ENSTSYG00000008765)	GPR62 (ENSTSYG00000029652)	PARP3 (ENSTSYG00000029098)	RRP9 (ENSTSYG00000030757)	IQCF1 (ENSTSYG00000029439)	IQCF2 (ENSTSYG00000027559)	IQCF3 (ENSTSYG00000036562)	ENSTSYG00000027708	CYGB (ENSTSYG00000029754)
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388.g	ENSGT00910000146856.a	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a.a	ENSGT00390000016901
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388.g	ENSGT00910000146856.a	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a.a	ENSGT00390000016901
Cebidae_a	ANCESTRAL SPECIES	24	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388.g	ENSGT00910000146856.a	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a.a	ENSGT00390000016901	ENSGT00940000155763
Capuchin	MODERN SPECIES		STAB1 (ENSCCAG00000031199)	NISCH (ENSCCAG00000018832)	TNNC1 (ENSCCAG00000035927) ##23	SEMA3G (ENSCCAG00000001366)	PHF7 (ENSCCAG00000032970)	BAP1 (ENSCCAG00000004114)	ENSCCAG00000037951	DNAH1 (ENSCCAG00000036049)	GLYCTK (ENSCCAG00000025040)	WDR82 (ENSCCAG00000024417)	PPM1M (ENSCCAG00000024537)	TWF2 (ENSCCAG00000036838)	TLR9 (ENSCCAG00000026080)	ALAS1 (ENSCCAG00000024705) #21	POC1A (ENSCCAG00000023380)	DUSP7 (ENSCCAG00000033164) #22	ENSCCAG00000027980	ACY1 (ENSCCAG00000018337)	ABHD14A (ENSCCAG00000021052)	ABHD14B (ENSCCAG00000027928)	PCBP4 (ENSCCAG00000033268)	PARP3 (ENSCCAG00000010591)	RRP9 (ENSCCAG00000024333)	IQCF1 (ENSCCAG00000033241)	ENSCCAG00000013496	IQCF5 (ENSCCAG00000027163)	IQCF2 (ENSCCAG00000031777)	IQCF3 (ENSCCAG00000036163)	ENSCCAG00000024130	IQCF6 (ENSCCAG00000018753)	GRM2 (ENSCCAG00000025066)
Bolivian squirrel monkey	MODERN SPECIES	127	STAB1 (ENSSBOG00000032779)	NISCH (ENSSBOG00000027508)	TNNC1 (ENSSBOG00000034266) ##23	SEMA3G (ENSSBOG00000028783)	PHF7 (ENSSBOG00000016729)	BAP1 (ENSSBOG00000018762)	ENSSBOG00000033108	DNAH1 (ENSSBOG00000020440)	GLYCTK (ENSSBOG00000028319)	WDR82 (ENSSBOG00000014681)	PPM1M (ENSSBOG00000031764)	TWF2 (ENSSBOG00000023295)	TLR9 (ENSSBOG00000030530)	ALAS1 (ENSSBOG00000030763) #21	POC1A (ENSSBOG00000027902)	DUSP7 (ENSSBOG00000020477) #22	RPL29 (ENSSBOG00000033284)	ACY1 (ENSSBOG00000035168)	ABHD14A (ENSSBOG00000036200)	ABHD14B (ENSSBOG00000025012)	PCBP4 (ENSSBOG00000027029)	PARP3 (ENSSBOG00000021070)	RRP9 (ENSSBOG00000028551)	IQCF1 (ENSSBOG00000031060)	IQCF5 (ENSSBOG00000033276)	IQCF2 (ENSSBOG00000027137)	IQCF3 (ENSSBOG00000035489)	ENSSBOG00000035909	IQCF6 (ENSSBOG00000019724)	GRM2 (ENSSBOG00000022667)	TEX264 (ENSSBOG00000027500)
Marmoset	MODERN SPECIES	6	NT5DC2 (ENSCJAG00000006610)	STAB1 (ENSCJAG00000006484)	NISCH (ENSCJAG00000006457)	TNNC1 (ENSCJAG00000006439) ##23	SEMA3G (ENSCJAG00000006415)	PHF7 (ENSCJAG00000006361)	BAP1 (ENSCJAG00000006322)	DNAH1 (ENSCJAG00000006182)	GLYCTK (ENSCJAG00000006155)	WDR82 (ENSCJAG00000047163)	PPM1M (ENSCJAG00000006090)	TWF2 (ENSCJAG00000048516)	TLR9 (ENSCJAG00000006069)	ALAS1 (ENSCJAG00000006000) #21	POC1A (ENSCJAG00000005972)	DUSP7 (ENSCJAG00000038360) #22	ENSCJAG00000077523	ACY1 (ENSCJAG00000005914)	ABHD14B (ENSCJAG00000005905)	PCBP4 (ENSCJAG00000005783)	GPR62 (ENSCJAG00000005767)	PARP3 (ENSCJAG00000005742)	RRP9 (ENSCJAG00000005736)	IQCF1 (ENSCJAG00000032309)	IQCF5 (ENSCJAG00000005719)	IQCF2 (ENSCJAG00000079723)	IQCF3 (ENSCJAG00000005707)	IQCF6 (ENSCJAG00000005700)	ENSCJAG00000069781	RAD54L2 (ENSCJAG00000005575)	DCAF1 (ENSCJAG00000005537)
Mas night monkey	MODERN SPECIES	553	NISCH (ENSANAG00000022782)	TNNC1 (ENSANAG00000022710) ##23	SEMA3G (ENSANAG00000026752)	ENSANAG00000026339	PHF7 (ENSANAG00000021364)	ENSANAG00000025082	ENSANAG00000032200	DNAH1 (ENSANAG00000031638)	GLYCTK (ENSANAG00000031147)	WDR82 (ENSANAG00000038110)	PPM1M (ENSANAG00000035341)	TWF2 (ENSANAG00000022502)	TLR9 (ENSANAG00000028901)	ALAS1 (ENSANAG00000023806) #21	POC1A (ENSANAG00000030897)	DUSP7 (ENSANAG00000019331) #22	ENSANAG00000024147	ACY1 (ENSANAG00000028462)	ABHD14A (ENSANAG00000030383)	ABHD14B (ENSANAG00000033176)	PCBP4 (ENSANAG00000023072)	PARP3 (ENSANAG00000038182)	RRP9 (ENSANAG00000032126)	IQCF1 (ENSANAG00000033830)	IQCF5 (ENSANAG00000024780)	IQCF2 (ENSANAG00000032372)	IQCF3 (ENSANAG00000000925)	IQCF6 (ENSANAG00000015434)	GRM2 (ENSANAG00000030877)	TEX264 (ENSANAG00000025482)	RAD54L2 (ENSANAG00000025396)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Rhinopithecus	ANCESTRAL SPECIES	95	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763
Golden snub-nosed monkey	MODERN SPECIES	1201	TNNC1 (ENSRROG00000030663) ##23	SEMA3G (ENSRROG00000029611)	ENSRROG00000035257	PHF7 (ENSRROG00000038518)	BAP1 (ENSRROG00000040428)	ENSRROG00000040683	DNAH1 (ENSRROG00000042414)	ENSRROG00000045163	GLYCTK (ENSRROG00000036017)	WDR82 (ENSRROG00000037223)	PPM1M (ENSRROG00000037382)	TWF2 (ENSRROG00000032567)	TLR9 (ENSRROG00000042143)	ALAS1 (ENSRROG00000010480) #21	POC1A (ENSRROG00000044472)	DUSP7 (ENSRROG00000030964) #22	ENSRROG00000031438	ACY1 (ENSRROG00000030452)	ABHD14B (ENSRROG00000011289)	PCBP4 (ENSRROG00000034589)	PARP3 (ENSRROG00000033856)	RRP9 (ENSRROG00000044974)
Black snub-nosed monkey	MODERN SPECIES	2323	TNNC1 (ENSRBIG00000040091) ##23	SEMA3G (ENSRBIG00000013558)	ENSRBIG00000039399	PHF7 (ENSRBIG00000033367)	BAP1 (ENSRBIG00000025339)	ENSRBIG00000038290	DNAH1 (ENSRBIG00000042646)	ENSRBIG00000027535	GLYCTK (ENSRBIG00000039788)	WDR82 (ENSRBIG00000027475)	PPM1M (ENSRBIG00000044032)	TWF2 (ENSRBIG00000027035)	TLR9 (ENSRBIG00000038584)	ALAS1 (ENSRBIG00000036219) #21	POC1A (ENSRBIG00000031748)	DUSP7 (ENSRBIG00000013068) #22	ENSRBIG00000030892
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l.b	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.a.b	ENSGT00940000155631.c	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763
Pig-tailed macaque	MODERN SPECIES	563	NISCH (ENSMNEG00000041321)	TNNC1 (ENSMNEG00000030852) ##23	SEMA3G (ENSMNEG00000043048)	ENSMNEG00000036603	PHF7 (ENSMNEG00000036817)	BAP1 (ENSMNEG00000028324)	ENSMNEG00000045285	DNAH1 (ENSMNEG00000016385)	GLYCTK (ENSMNEG00000036181)	WDR82 (ENSMNEG00000033534)	PPM1M (ENSMNEG00000002813)	TWF2 (ENSMNEG00000040395)	TLR9 (ENSMNEG00000045276)	ALAS1 (ENSMNEG00000036890) #21	POC1A (ENSMNEG00000042811)	DUSP7 (ENSMNEG00000042494) #22	ENSMNEG00000028560	ACY1 (ENSMNEG00000033795)	ABHD14B (ENSMNEG00000028860)	PCBP4 (ENSMNEG00000028553)	PARP3 (ENSMNEG00000040704)	RRP9 (ENSMNEG00000029887)	IQCF1 (ENSMNEG00000020406)	IQCF5 (ENSMNEG00000043252)	IQCF2 (ENSMNEG00000042649)	IQCF3 (ENSMNEG00000035241)	IQCF6 (ENSMNEG00000012108)	GRM2 (ENSMNEG00000017825)	TEX264 (ENSMNEG00000031111)	RAD54L2 (ENSMNEG00000035063)	DCAF1 (ENSMNEG00000042474)
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT01100000263539.b.b.b.b.b.a.b.a.a.b.a.b	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.a.a	ENSGT00940000155631.d	ENSGT00940000155631.c	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00940000155763
Crab-eating macaque	MODERN SPECIES	11	NISCH (ENSMFAG00000029268)	TNNC1 (ENSMFAG00000034519) ##23	SEMA3G (ENSMFAG00000031594)	PHF7 (ENSMFAG00000044611)	BAP1 (ENSMFAG00000037249)	ENSMFAG00000051698	DNAH1 (ENSMFAG00000038690)	GLYCTK (ENSMFAG00000033123)	WDR82 (ENSMFAG00000065212)	PPM1M (ENSMFAG00000035503)	TWF2 (ENSMFAG00000030787)	TLR9 (ENSMFAG00000036170)	ALAS1 (ENSMFAG00000034496) #21	POC1A (ENSMFAG00000001970)	ENSMFAG00000049968	DUSP7 (ENSMFAG00000041079) #22	ENSMFAG00000030460	ENSMFAG00000065828	ENSMFAG00000033676	PCBP4 (ENSMFAG00000001431)	PARP3 (ENSMFAG00000032908)	RRP9 (ENSMFAG00000000887)	IQCF1 (ENSMFAG00000039453)	IQCF5 (ENSMFAG00000033403)	IQCF2 (ENSMFAG00000030412)	ENSMFAG00000058480	IQCF3 (ENSMFAG00000043782)	IQCF6 (ENSMFAG00000035127)	GRM2 (ENSMFAG00000045888)	RAD54L2 (ENSMFAG00000041836)	DCAF1 (ENSMFAG00000036421)
Rhesus	MODERN SPECIES	11	STAB1 (ENSMMUG00000017351)	NISCH (ENSMMUG00000005619)	TNNC1 (ENSMMUG00000005618) ##23	SEMA3G (ENSMMUG00000018872)	PHF7 (ENSMMUG00000016984)	BAP1 (ENSMMUG00000016982)	ENSMMUG00000055701	DNAH1 (ENSMMUG00000016974)	GLYCTK (ENSMMUG00000016971)	WDR82 (ENSMMUG00000008234)	PPM1M (ENSMMUG00000008236)	TWF2 (ENSMMUG00000047685)	TLR9 (ENSMMUG00000012263)	ALAS1 (ENSMMUG00000005596) #21	POC1A (ENSMMUG00000012485)	DUSP7 (ENSMMUG00000005300) #22	ACY1 (ENSMMUG00000003646)	ABHD14B (ENSMMUG00000019657)	PCBP4 (ENSMMUG00000022205)	GPR62 (ENSMMUG00000022204)	PARP3 (ENSMMUG00000022203)	RRP9 (ENSMMUG00000003644)	IQCF1 (ENSMMUG00000004352)	IQCF5 (ENSMMUG00000004353)	IQCF3 (ENSMMUG00000014898)	IQCF2 (ENSMMUG00000051676)	IQCF6 (ENSMMUG00000047816)	GRM2 (ENSMMUG00000012005)	RAD54L2 (ENSMMUG00000012002)	DCAF1 (ENSMMUG00000004280)	RBM15B (ENSMMUG00000059124)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l.b	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Olive baboon	MODERN SPECIES	11	UQCC5 (ENSPANG00000016306)	NT5DC2 (ENSPANG00000020993)	NISCH (ENSPANG00000026093)	TNNC1 (ENSPANG00000030789) ##23	SEMA3G (ENSPANG00000006629)	PHF7 (ENSPANG00000013327)	BAP1 (ENSPANG00000011415)	DNAH1 (ENSPANG00000004618)	GLYCTK (ENSPANG00000006914)	WDR82 (ENSPANG00000023713)	PPM1M (ENSPANG00000020526)	TWF2 (ENSPANG00000031939)	TLR9 (ENSPANG00000015420)	ALAS1 (ENSPANG00000022148) #21	POC1A (ENSPANG00000016905)	DUSP7 (ENSPANG00000018303) #22	ENSPANG00000005234	ACY1 (ENSPANG00000005723)	ABHD14A (ENSPANG00000048348)	ABHD14B (ENSPANG00000008142)	PCBP4 (ENSPANG00000026222)	GPR62 (ENSPANG00000009569)	PARP3 (ENSPANG00000000752)	RRP9 (ENSPANG00000021490)	IQCF1 (ENSPANG00000018381)	IQCF5 (ENSPANG00000014101)	IQCF2 (ENSPANG00000016372)	IQCF3 (ENSPANG00000022147)	IQCF6 (ENSPANG00000010361)	GRM2 (ENSPANG00000020592)	TEX264 (ENSPANG00000013161)
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00910000146856	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l.b	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.a.a.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901
Sooty mangabey	MODERN SPECIES	650	TNNC1 (ENSCATG00000038007) ##23	SEMA3G (ENSCATG00000035629)	ENSCATG00000040703	PHF7 (ENSCATG00000044277)	ENSCATG00000034612	BAP1 (ENSCATG00000036457)	ENSCATG00000040421	DNAH1 (ENSCATG00000044776)	GLYCTK (ENSCATG00000035027)	WDR82 (ENSCATG00000041029)	PPM1M (ENSCATG00000000663)	TWF2 (ENSCATG00000042476)	TLR9 (ENSCATG00000042563)	ALAS1 (ENSCATG00000043824) #21	POC1A (ENSCATG00000021822)	DUSP7 (ENSCATG00000035235) #22	ENSCATG00000035485	ENSCATG00000030838
Drill	MODERN SPECIES	937	TNNC1 (ENSMLEG00000040569) ##23	SEMA3G (ENSMLEG00000040041)	ENSMLEG00000044065	PHF7 (ENSMLEG00000027635)	BAP1 (ENSMLEG00000041809)	ENSMLEG00000043544	DNAH1 (ENSMLEG00000041529)	ENSMLEG00000033199	GLYCTK (ENSMLEG00000028922)	WDR82 (ENSMLEG00000032032)	PPM1M (ENSMLEG00000036643)	TWF2 (ENSMLEG00000027690)	TLR9 (ENSMLEG00000006731)	ALAS1 (ENSMLEG00000032040) #21	POC1A (ENSMLEG00000039574)	DUSP7 (ENSMLEG00000029729) #22	ENSMLEG00000031267	ENSMLEG00000026208	ABHD14A (ENSMLEG00000018163)	ABHD14B (ENSMLEG00000043223)	PCBP4 (ENSMLEG00000027083)	PARP3 (ENSMLEG00000035156)	RRP9 (ENSMLEG00000043887)	IQCF1 (ENSMLEG00000043607)	IQCF5 (ENSMLEG00000022356)	IQCF2 (ENSMLEG00000003044)	IQCF3 (ENSMLEG00000035490)	IQCF6 (ENSMLEG00000026614)	GRM2 (ENSMLEG00000023663)	TEX264 (ENSMLEG00000039894)	RAD54L2 (ENSMLEG00000034668)
Vervet Monkey	MODERN SPECIES	14	UQCC5 (ENSCSAG00000013345)	NT5DC2 (ENSCSAG00000013353)	STAB1 (ENSCSAG00000013391)	NISCH (ENSCSAG00000013414)	TNNC1 (ENSCSAG00000013426) ##23	SEMA3G (ENSCSAG00000013447)	PHF7 (ENSCSAG00000013464)	BAP1 (ENSCSAG00000013472)	DNAH1 (ENSCSAG00000013710)	GLYCTK (ENSCSAG00000013762)	PPM1M (ENSCSAG00000013770)	TWF2 (ENSCSAG00000013812)	TLR9 (ENSCSAG00000013839)	ALAS1 (ENSCSAG00000013850) #21	POC1A (ENSCSAG00000013862)	DUSP7 (ENSCSAG00000013871) #22	ENSCSAG00000013884	ACY1 (ENSCSAG00000013897)	ABHD14A (ENSCSAG00000013903)	ABHD14B (ENSCSAG00000013906)	PCBP4 (ENSCSAG00000013913)	PARP3 (ENSCSAG00000013930)	RRP9 (ENSCSAG00000013941)	IQCF1 (ENSCSAG00000013951)	IQCF5 (ENSCSAG00000018792)	IQCF2 (ENSCSAG00000013958)	IQCF3 (ENSCSAG00000013967)	ENSCSAG00000018791	IQCF6 (ENSCSAG00000018790)	GRM2 (ENSCSAG00000013976)	TEX264 (ENSCSAG00000014002)
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00950000182987.c.a.a.db.a	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Gibbon	MODERN SPECIES	19	TNNC1 (ENSNLEG00000007148) ##23	SEMA3G (ENSNLEG00000007140)	ENSNLEG00000032495	PHF7 (ENSNLEG00000007134)	BAP1 (ENSNLEG00000028041)	DNAH1 (ENSNLEG00000007110)	ENSNLEG00000029286	GLYCTK (ENSNLEG00000007106)	WDR82 (ENSNLEG00000007104)	PPM1M (ENSNLEG00000007097)	TWF2 (ENSNLEG00000033626)	TLR9 (ENSNLEG00000007091)	ALAS1 (ENSNLEG00000007088) #21	ENSNLEG00000035115	POC1A (ENSNLEG00000007084)	ENSNLEG00000034538 #22	ENSNLEG00000032527	ENSNLEG00000007070	ABHD14B (ENSNLEG00000007067)	PCBP4 (ENSNLEG00000007064)	ENSNLEG00000007063	PARP3 (ENSNLEG00000007058)	RRP9 (ENSNLEG00000007054)	IQCF1 (ENSNLEG00000007053)	IQCF5 (ENSNLEG00000018542)	IQCF2 (ENSNLEG00000007050)	IQCF3 (ENSNLEG00000007049)	ENSNLEG00000007047	GRM2 (ENSNLEG00000007044)	ENSNLEG00000007040	RAD54L2 (ENSNLEG00000007038)
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT01030000234620.a.a.a.a.a.b.l	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00950000182987.c.a.a.db.a	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.m	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00950000182987.c.a.a.db.a	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.m	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00950000182987.c.a.a.db.a	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901
Pan	ANCESTRAL SPECIES	2	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00910000146926	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT01030000234620.a.a.a.a.a.b.l	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965.o.b	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00950000182987.c.a.a.db.a	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.k.a.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763
Chimpanzee	MODERN SPECIES	16	TNNC1 (ENSPTRG00000015000) ##23	SEMA3G (ENSPTRG00000014999)	ENSPTRG00000051179	PHF7 (ENSPTRG00000014998)	BAP1 (ENSPTRG00000014997)	ENSPTRG00000048221	DNAH1 (ENSPTRG00000014996)	GLYCTK (ENSPTRG00000014995)	WDR82 (ENSPTRG00000044611)	PPM1M (ENSPTRG00000014993)	TWF2 (ENSPTRG00000042003)	TLR9 (ENSPTRG00000014992)	ALAS1 (ENSPTRG00000014991) #21	ENSPTRG00000044698	POC1A (ENSPTRG00000014989)	DUSP7 (ENSPTRG00000014988) #22	RPL29 (ENSPTRG00000043237)	ACY1 (ENSPTRG00000014986)	ABHD14A (ENSPTRG00000043627)	ABHD14B (ENSPTRG00000014984)	PCBP4 (ENSPTRG00000014983)	PARP3 (ENSPTRG00000014981)	RRP9 (ENSPTRG00000014980)	IQCF1 (ENSPTRG00000014977)	IQCF5 (ENSPTRG00000023832)	IQCF2 (ENSPTRG00000014978)	IQCF3 (ENSPTRG00000041598)	IQCF6 (ENSPTRG00000034288)	GRM2 (ENSPTRG00000014976)	TEX264 (ENSPTRG00000043742)	RAD54L2 (ENSPTRG00000014974)
Bonobo	MODERN SPECIES	16	TNNC1 (ENSPPAG00000036861) ##23	SEMA3G (ENSPPAG00000033280)	ENSPPAG00000030262	PHF7 (ENSPPAG00000036489)	BAP1 (ENSPPAG00000028588)	ENSPPAG00000038782	DNAH1 (ENSPPAG00000032288)	GLYCTK (ENSPPAG00000042988)	WDR82 (ENSPPAG00000032115)	PPM1M (ENSPPAG00000037368)	TWF2 (ENSPPAG00000033131)	TLR9 (ENSPPAG00000018063)	ALAS1 (ENSPPAG00000042129) #21	ENSPPAG00000017387	POC1A (ENSPPAG00000043583)	DUSP7 (ENSPPAG00000043720) #22	ENSPPAG00000037142	ENSPPAG00000012360	ABHD14B (ENSPPAG00000037633)	PCBP4 (ENSPPAG00000038764)	PARP3 (ENSPPAG00000040859)	RRP9 (ENSPPAG00000027919)	IQCF1 (ENSPPAG00000035624)	IQCF5 (ENSPPAG00000042728)	IQCF2 (ENSPPAG00000043972)	IQCF3 (ENSPPAG00000036680)	GRM2 (ENSPPAG00000024133)	TEX264 (ENSPPAG00000042362)	RAD54L2 (ENSPPAG00000038472)	DCAF1 (ENSPPAG00000027356)	ENSPPAG00000040145
Human	MODERN SPECIES	15	STAB1 (ENSG00000010327)	NISCH (ENSG00000010322)	TNNC1 (ENSG00000114854) ##23	SEMA3G (ENSG00000010319)	PHF7 (ENSG00000010318)	BAP1 (ENSG00000163930)	DNAH1 (ENSG00000114841)	GLYCTK (ENSG00000168237)	WDR82 (ENSG00000164091)	PPM1M (ENSG00000164088)	TWF2 (ENSG00000247596)	ENSG00000173366	TLR9 (ENSG00000239732)	ALAS1 (ENSG00000023330) #21	POC1A (ENSG00000164087)	DUSP7 (ENSG00000164086) #22	RPL29 (ENSG00000162244)	ACY1 (ENSG00000243989)	ABHD14A-ACY1 (ENSG00000114786)	ABHD14A (ENSG00000248487)	ABHD14B (ENSG00000114779)	PCBP4 (ENSG00000090097)	GPR62 (ENSG00000180929)	PARP3 (ENSG00000041880)	RRP9 (ENSG00000114767)	IQCF1 (ENSG00000173389)	IQCF5 (ENSG00000214681)	IQCF2 (ENSG00000184345)	IQCF3 (ENSG00000229972)	ENSG00000285749	IQCF6 (ENSG00000214686)
Gorilla	MODERN SPECIES	16	NISCH (ENSGGOG00000015932)	TNNC1 (ENSGGOG00000015926) ##23	SEMA3G (ENSGGOG00000015913)	ENSGGOG00000043984	PHF7 (ENSGGOG00000015905)	BAP1 (ENSGGOG00000015895)	DNAH1 (ENSGGOG00000015852)	GLYCTK (ENSGGOG00000015844)	WDR82 (ENSGGOG00000040779)	PPM1M (ENSGGOG00000015824)	TWF2 (ENSGGOG00000041047)	TLR9 (ENSGGOG00000015810)	ALAS1 (ENSGGOG00000013205) #21	ENSGGOG00000040468	POC1A (ENSGGOG00000006652)	DUSP7 (ENSGGOG00000038775) #22	RPL29 (ENSGGOG00000024691)	ENSGGOG00000016084	ABHD14B (ENSGGOG00000016073)	PCBP4 (ENSGGOG00000012474)	PARP3 (ENSGGOG00000012456)	RRP9 (ENSGGOG00000012441)	IQCF1 (ENSGGOG00000012462)	IQCF5 (ENSGGOG00000009467)	IQCF2 (ENSGGOG00000012357)	IQCF3 (ENSGGOG00000022581)	ENSGGOG00000026511	ENSGGOG00000012054	GRM2 (ENSGGOG00000010055)	TEX264 (ENSGGOG00000010049)	RAD54L2 (ENSGGOG00000010032)
Orangutan	MODERN SPECIES	16	STAB1 (ENSPPYG00000013804)	NISCH (ENSPPYG00000013805)	TNNC1 (ENSPPYG00000013806) ##23	SEMA3G (ENSPPYG00000013807)	PHF7 (ENSPPYG00000013808)	BAP1 (ENSPPYG00000013809)	DNAH1 (ENSPPYG00000013810)	ENSPPYG00000030612	GLYCTK (ENSPPYG00000013811)	WDR82 (ENSPPYG00000013812)	PPM1M (ENSPPYG00000013813)	TWF2 (ENSPPYG00000013814)	TLR9 (ENSPPYG00000039505)	ALAS1 (ENSPPYG00000013815) #21	POC1A (ENSPPYG00000013816)	DUSP7 (ENSPPYG00000040626) #22	RPL29 (ENSPPYG00000013818)	ACY1 (ENSPPYG00000013819)	ENSPPYG00000013820	ABHD14B (ENSPPYG00000013821)	PCBP4 (ENSPPYG00000013822)	GPR62 (ENSPPYG00000013823)	PARP3 (ENSPPYG00000013824)	RRP9 (ENSPPYG00000013825)	IQCF1 (ENSPPYG00000034946)	IQCF5 (ENSPPYG00000013826)	IQCF2 (ENSPPYG00000035892)	IQCF3 (ENSPPYG00000036810)	ENSPPYG00000039494	ENSPPYG00000035087	IQCF6 (ENSPPYG00000013828)
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b
Tree shrew	MODERN SPECIES	3181															POC1A (ENSTBEG00000007888)	ENSTBEG00000007300 #22
Glires	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o
Lagomorpha	ANCESTRAL SPECIES	11	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	20	NT5DC2 (ENSOCUG00000021457)	STAB1 (ENSOCUG00000028026)	NISCH (ENSOCUG00000007987)	TNNC1 (ENSOCUG00000007983) ##23	SEMA3G (ENSOCUG00000007969)	PHF7 (ENSOCUG00000007957)	BAP1 (ENSOCUG00000007946)	DNAH1 (ENSOCUG00000007895)	GLYCTK (ENSOCUG00000007847)	WDR82 (ENSOCUG00000008564)	PPM1M (ENSOCUG00000008558)	TWF2 (ENSOCUG00000021993)	TLR9 (ENSOCUG00000024735)	ALAS1 (ENSOCUG00000008551) #21	POC1A (ENSOCUG00000002080)	ENSOCUG00000002075 #22	ENSOCUG00000002074	ACY1 (ENSOCUG00000010026)	ENSOCUG00000032318	ABHD14B (ENSOCUG00000010023)	PCBP4 (ENSOCUG00000025336)	PARP3 (ENSOCUG00000021270)	RRP9 (ENSOCUG00000009193)	IQCF5 (ENSOCUG00000022685)	IQCF2 (ENSOCUG00000036874)	IQCF3 (ENSOCUG00000029189)	ENSOCUG00000029693	ENSOCUG00000036205	IQCF6 (ENSOCUG00000029591)	GRM2 (ENSOCUG00000017597)	TEX264 (ENSOCUG00000017592)
Rabbit	MODERN SPECIES	8	DUOXA2 (ENSOCUG00000014290)	DUOXA1 (ENSOCUG00000014298)	DUOX1 (ENSOCUG00000014307)	ENSOCUG00000014332	SLC28A2 (ENSOCUG00000014340)	GATM (ENSOCUG00000014352)	SPATA5L1 (ENSOCUG00000011209)	ENSOCUG00000029216	ENSOCUG00000037926	SLC30A4 (ENSOCUG00000013313)	ENSOCUG00000030326	BLOC1S6 (ENSOCUG00000017351)	SQOR (ENSOCUG00000014347)	ENSOCUG00000030558	ENSOCUG00000032462	ENSOCUG00000035692 #22	SEMA6D (ENSOCUG00000007901)	ENSOCUG00000021707	ENSOCUG00000031757	SLC24A5 (ENSOCUG00000013038)	MYEF2 (ENSOCUG00000013043)	CTXN2 (ENSOCUG00000026367)	SLC12A1 (ENSOCUG00000016508)	ENSOCUG00000003862	FBN1 (ENSOCUG00000003866)	CEP152 (ENSOCUG00000006424)	EID1 (ENSOCUG00000025492)	SHC4 (ENSOCUG00000006438)	SECISBP2L (ENSOCUG00000006443)	COPS2 (ENSOCUG00000006455)	ENSOCUG00000036138
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000010145.c.b	ENSGT00940000170609	ENSGT00940000156421	ENSGT00390000016225	ENSGT00960000190088	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT00390000010145.c.b	ENSGT00940000170609	ENSGT00940000156421	ENSGT00390000016225	ENSGT00960000190088	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b
Kangaroo rat	MODERN SPECIES	426	Mrpl3 (ENSDORG00000029436)	ENSDORG00000027488	ENSDORG00000027610	ENSDORG00000027143	Atp2c1 (ENSDORG00000001769)	ENSDORG00000004813	ENSDORG00000025846	ENSDORG00000027720	Glyctk (ENSDORG00000025214)	Wdr82 (ENSDORG00000016241)	Ppm1m (ENSDORG00000025109)	Twf2 (ENSDORG00000019768)	Tlr9 (ENSDORG00000012819)	Alas1 (ENSDORG00000012816) #21	Poc1a (ENSDORG00000004729)	Dusp7 (ENSDORG00000006443) #22	ENSDORG00000004990	Acy1 (ENSDORG00000004989)	Abhd14a (ENSDORG00000004988)	Abhd14b (ENSDORG00000014132)	Pcbp4 (ENSDORG00000000573)	Rrp9 (ENSDORG00000009108)	ENSDORG00000012669	Iqcf5 (ENSDORG00000023660)	Iqcf6 (ENSDORG00000026677)	Grm2 (ENSDORG00000000837)	Tex264 (ENSDORG00000029590)	Rad54l2 (ENSDORG00000000651)	Dcaf1 (ENSDORG00000009856)	Manf (ENSDORG00000009854)	Dock3 (ENSDORG00000009848)
Myomorpha	ANCESTRAL SPECIES	26	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00960000190088	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b
Muroidea	ANCESTRAL SPECIES	27	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00960000190088	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00960000190088	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00960000190088	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a	ENSGT00390000007084.d.h	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763
Golden Hamster	MODERN SPECIES	667	Nudt16l2 (ENSMAUG00000012699)	ENSMAUG00000021626	Aste1 (ENSMAUG00000021373)	Atp2c1 (ENSMAUG00000013153)	Pik3r4 (ENSMAUG00000021984)	Col6a6 (ENSMAUG00000011745)	Col6a5 (ENSMAUG00000018573)	Col6a4 (ENSMAUG00000018662)	Glyctk (ENSMAUG00000021788)	Wdr82 (ENSMAUG00000019638)	Ppm1m (ENSMAUG00000019115)	Twf2 (ENSMAUG00000004692)	Tlr9 (ENSMAUG00000017446)	Alas1 (ENSMAUG00000019423) #21	Poc1a (ENSMAUG00000017403)	Dusp7 (ENSMAUG00000020685) #22	ENSMAUG00000019982	ENSMAUG00000017959	Acy1 (ENSMAUG00000009332)	Abhd14a (ENSMAUG00000021839)	Abhd14b (ENSMAUG00000020892)	Pcbp4 (ENSMAUG00000021064)	Gpr62 (ENSMAUG00000010973)	Parp3 (ENSMAUG00000010154)	Rrp9 (ENSMAUG00000021744)	Iqcf1 (ENSMAUG00000010313)	Iqcf5 (ENSMAUG00000021864)	Iqcf4 (ENSMAUG00000020377)	Iqcf6 (ENSMAUG00000020900)	Grm2 (ENSMAUG00000008556)	Rad54l2 (ENSMAUG00000011651)
Chinese hamster chok1gshd	MODERN SPECIES	284	Nudt16l2 (ENSCGRG00001019484)	ENSCGRG00001017103	Aste1 (ENSCGRG00001011788)	Atp2c1 (ENSCGRG00001024416)	Pik3r4 (ENSCGRG00001014556)	ENSCGRG00001000896	Col6a5 (ENSCGRG00001020261)	Col6a4 (ENSCGRG00001017686)	Glyctk (ENSCGRG00001022910)	Wdr82 (ENSCGRG00001020968)	Ppm1m (ENSCGRG00001016007)	Twf2 (ENSCGRG00001008607)	Tlr9 (ENSCGRG00001006017)	Alas1 (ENSCGRG00001000444) #21	Poc1a (ENSCGRG00001007357)	Dusp7 (ENSCGRG00001014025) #22	ENSCGRG00001010247	Acy1 (ENSCGRG00001002107)	Abhd14a (ENSCGRG00001019687)	Abhd14b (ENSCGRG00001018315)	Pcbp4 (ENSCGRG00001014953)	Gpr62 (ENSCGRG00001012672)	Parp3 (ENSCGRG00001005456)	Rrp9 (ENSCGRG00001020232)	Iqcf1 (ENSCGRG00001015695)	Iqcf5 (ENSCGRG00001015347)	Iqcf4 (ENSCGRG00001012815)	Iqcf6 (ENSCGRG00001023729)	Grm2 (ENSCGRG00001021433)	Tex264 (ENSCGRG00001005585)	Rad54l2 (ENSCGRG00001015714)
Cricetidae_B	ANCESTRAL SPECIES	23	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00960000190088	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.b.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Northern American deer mouse	MODERN SPECIES	20	Nek11 (ENSPEMG00000000317)	Aste1 (ENSPEMG00000020090)	Atp2c1 (ENSPEMG00000019560)	ENSPEMG00000025970	ENSPEMG00000031042	Col6a6 (ENSPEMG00000023739)	Col6a5 (ENSPEMG00000023705)	Col6a4 (ENSPEMG00000023445)	Glyctk (ENSPEMG00000022824)	Wdr82 (ENSPEMG00000015452)	Ppm1m (ENSPEMG00000015148)	Twf2 (ENSPEMG00000024215)	Tlr9 (ENSPEMG00000016808)	Alas1 (ENSPEMG00000024130) #21	Poc1a (ENSPEMG00000024131)	Dusp7 (ENSPEMG00000016793) #22	ENSPEMG00000016586	Acy1 (ENSPEMG00000007120)	Abhd14a (ENSPEMG00000014484)	Abhd14b (ENSPEMG00000015990)	Pcbp4 (ENSPEMG00000009276)	Gpr62 (ENSPEMG00000000539)	Parp3 (ENSPEMG00000000567)	Rrp9 (ENSPEMG00000008256)	Iqcf1 (ENSPEMG00000018806)	Iqcf5 (ENSPEMG00000010627)	ENSPEMG00000030697	ENSPEMG00000028215	ENSPEMG00000026072	ENSPEMG00000017145	Iqcf6 (ENSPEMG00000001772)
Prairie vole	MODERN SPECIES	116																Dusp7 (ENSMOCG00000014226) #22	ENSMOCG00000020926	Acy1 (ENSMOCG00000007731)	Abhd14a (ENSMOCG00000000212)	ENSMOCG00000012628	Pcbp4 (ENSMOCG00000013557)	Gpr62 (ENSMOCG00000005464)	Parp3 (ENSMOCG00000000186)	Rrp9 (ENSMOCG00000003412)	ENSMOCG00000010424	ENSMOCG00000000533	Thsd4 (ENSMOCG00000007028)	Nr2e3 (ENSMOCG00000014733)	Poc1a (ENSMOCG00000003396)	Alas1 (ENSMOCG00000021371) #21	Tlr9 (ENSMOCG00000016071)
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Mus	ANCESTRAL SPECIES	4	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a.c	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Mus_C	ANCESTRAL SPECIES	23	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.g.a.c	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.a.a.p	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901
spretus	MODERN SPECIES	18	Nudt16l2 (MGP_SPRETEiJ_G0033749)	Nek11 (MGP_SPRETEiJ_G0033750)	Aste1 (MGP_SPRETEiJ_G0033751)	Atp2c1 (MGP_SPRETEiJ_G0033752)	Pik3r4 (MGP_SPRETEiJ_G0033753)	Col6a6 (MGP_SPRETEiJ_G0033754)	Col6a5 (MGP_SPRETEiJ_G0033755)	Col6a4 (MGP_SPRETEiJ_G0033756)	Glyctk (MGP_SPRETEiJ_G0033757)	Wdr82 (MGP_SPRETEiJ_G0033758)	Ppm1m (MGP_SPRETEiJ_G0033759)	Twf2 (MGP_SPRETEiJ_G0033760)	Tlr9 (MGP_SPRETEiJ_G0033761)	Alas1 (MGP_SPRETEiJ_G0033762) #21	MGP_SPRETEiJ_G0033763	Dusp7 (MGP_SPRETEiJ_G0033764) #22	Acy1 (MGP_SPRETEiJ_G0033765)	Abhd14a (MGP_SPRETEiJ_G0033766)	Abhd14b (MGP_SPRETEiJ_G0033767)	MGP_SPRETEiJ_G0033768	Gpr62 (MGP_SPRETEiJ_G0033769)	Parp3 (MGP_SPRETEiJ_G0033770)	Rrp9 (MGP_SPRETEiJ_G0033771)	Iqcf1 (MGP_SPRETEiJ_G0033772)	4930517N10Rik (MGP_SPRETEiJ_G0033773)	Iqcf5 (MGP_SPRETEiJ_G0033774)	Iqcf4 (MGP_SPRETEiJ_G0033775)	Iqcf6 (MGP_SPRETEiJ_G0033776)	Grm2 (MGP_SPRETEiJ_G0033777)	Tex264 (MGP_SPRETEiJ_G0033778)	Rad54l2 (MGP_SPRETEiJ_G0033779)
Steppe mouse	MODERN SPECIES	311																Dusp7 (ENSMSIG00000030223) #22
Mouse	MODERN SPECIES	18	Nudt16l2 (ENSMUSG00000032566)	Nek11 (ENSMUSG00000035032)	Aste1 (ENSMUSG00000032567)	Atp2c1 (ENSMUSG00000032570)	Pik3r4 (ENSMUSG00000032571)	Col6a6 (ENSMUSG00000043719)	Col6a5 (ENSMUSG00000091345)	Col6a4 (ENSMUSG00000032572)	Glyctk (ENSMUSG00000020258)	Wdr82 (ENSMUSG00000020257)	Ppm1m (ENSMUSG00000020253)	Twf2 (ENSMUSG00000023277)	Tlr9 (ENSMUSG00000045322)	Alas1 (ENSMUSG00000032786) #21	Poc1a (ENSMUSG00000023345)	Dusp7 (ENSMUSG00000053716) #22	Rpl29 (ENSMUSG00000048758)	Acy1 (ENSMUSG00000023262)	Abhd14a (ENSMUSG00000042210)	Abhd14b (ENSMUSG00000042073)	Pcbp4 (ENSMUSG00000023495)	Gpr62 (ENSMUSG00000091735)	Parp3 (ENSMUSG00000023249)	Rrp9 (ENSMUSG00000041506)	Iqcf1 (ENSMUSG00000066383)	4930517N10Rik (ENSMUSG00000118396)	Iqcf5 (ENSMUSG00000066382)	Iqcf3 (ENSMUSG00001074846)	Iqcf4 (ENSMUSG00000041009)	Iqcf6 (ENSMUSG00000091129)	Grm2 (ENSMUSG00000023192)
Ryukyu mouse	MODERN SPECIES	18	Nudt16l2 (MGP_CAROLIEiJ_G0032603)	Nek11 (MGP_CAROLIEiJ_G0032604)	MGP_CAROLIEiJ_G0032605	Atp2c1 (MGP_CAROLIEiJ_G0032606)	Pik3r4 (MGP_CAROLIEiJ_G0032607)	Col6a6 (MGP_CAROLIEiJ_G0032608)	Col6a5 (MGP_CAROLIEiJ_G0032609)	Col6a4 (MGP_CAROLIEiJ_G0032610)	Glyctk (MGP_CAROLIEiJ_G0032611)	Wdr82 (MGP_CAROLIEiJ_G0032612)	Ppm1m (MGP_CAROLIEiJ_G0032613)	Twf2 (MGP_CAROLIEiJ_G0032614)	Tlr9 (MGP_CAROLIEiJ_G0032615)	Alas1 (MGP_CAROLIEiJ_G0032616) #21	MGP_CAROLIEiJ_G0032617	Dusp7 (MGP_CAROLIEiJ_G0032618) #22	MGP_CAROLIEiJ_G0032619	Acy1 (MGP_CAROLIEiJ_G0032620)	Abhd14a (MGP_CAROLIEiJ_G0032621)	Abhd14b (MGP_CAROLIEiJ_G0032622)	Pcbp4 (MGP_CAROLIEiJ_G0032623)	Gpr62 (MGP_CAROLIEiJ_G0032624)	Parp3 (MGP_CAROLIEiJ_G0032625)	Rrp9 (MGP_CAROLIEiJ_G0032626)	Iqcf1 (MGP_CAROLIEiJ_G0032627)	Iqcf5 (MGP_CAROLIEiJ_G0032628)	4930517N10Rik (MGP_CAROLIEiJ_G0032629)	Iqcf4 (MGP_CAROLIEiJ_G0032630)	Iqcf6 (MGP_CAROLIEiJ_G0032631)	Grm2 (MGP_CAROLIEiJ_G0032632)	Tex264 (MGP_CAROLIEiJ_G0032633)
Shrew mouse	MODERN SPECIES	1	Nudt16 (MGP_PahariEiJ_G0015470)	Nudt16l2 (MGP_PahariEiJ_G0015471)	MGP_PahariEiJ_G0015472	Aste1 (MGP_PahariEiJ_G0015473)	Atp2c1 (MGP_PahariEiJ_G0015474)	Pik3r4 (MGP_PahariEiJ_G0015475)	Col6a6 (MGP_PahariEiJ_G0015476)	Col6a5 (MGP_PahariEiJ_G0015477)	Col6a4 (MGP_PahariEiJ_G0015478)	Glyctk (MGP_PahariEiJ_G0015479)	Ppm1m (MGP_PahariEiJ_G0015481)	Twf2 (MGP_PahariEiJ_G0015482)	Tlr9 (MGP_PahariEiJ_G0015483)	Alas1 (MGP_PahariEiJ_G0015484) #21	MGP_PahariEiJ_G0015485	Dusp7 (MGP_PahariEiJ_G0015486) #22	MGP_PahariEiJ_G0015487	Acy1 (MGP_PahariEiJ_G0015488)	Abhd14a (MGP_PahariEiJ_G0015489)	Abhd14b (MGP_PahariEiJ_G0015490)	Pcbp4 (MGP_PahariEiJ_G0015491)	Gpr62 (MGP_PahariEiJ_G0015492)	Parp3 (MGP_PahariEiJ_G0015493)	Rrp9 (MGP_PahariEiJ_G0015494)	Iqcf1 (MGP_PahariEiJ_G0015495)	MGP_PahariEiJ_G0015496	Iqcf5 (MGP_PahariEiJ_G0015497)	MGP_PahariEiJ_G0015498	Iqcf6 (MGP_PahariEiJ_G0015499)	Grm2 (MGP_PahariEiJ_G0015500)	Tex264 (MGP_PahariEiJ_G0015501)
Rat	MODERN SPECIES	18	Nudt16l2 (ENSRNOG00000037305)	Nek11 (ENSRNOG00000042432)	Aste1 (ENSRNOG00000013059)	Atp2c1 (ENSRNOG00000013305)	Pik3r4 (ENSRNOG00000013669)	Col6a6 (ENSRNOG00000023007)	Col6a5 (ENSRNOG00000010663)	Col6a4 (ENSRNOG00000031782)	Glyctk (ENSRNOG00000046307)	Wdr82 (ENSRNOG00000048441)	Ppm1m (ENSRNOG00000046535)	Twf2 (ENSRNOG00000048915)	Tlr9 (ENSRNOG00000048161)	Alas1 (ENSRNOG00000056596) #21	Poc1a (ENSRNOG00000037295)	Dusp7 (ENSRNOG00000010789) #22	Rpl29 (ENSRNOG00000011138)	Acy1 (ENSRNOG00000011189)	Abhd14a (ENSRNOG00000011936)	Abhd14b (ENSRNOG00000012073)	Pcbp4 (ENSRNOG00000012406)	Gpr62 (ENSRNOG00000022567)	Parp3 (ENSRNOG00000012865)	Rrp9 (ENSRNOG00000012927)	Iqcf1 (ENSRNOG00000037289)	Iqcf5 (ENSRNOG00000013164)	Iqcf3 (ENSRNOG00000022445)	LOC102550160 (ENSRNOG00000037285)	Iqcf6 (ENSRNOG00000042065)	Grm2 (ENSRNOG00000013171)	Tex264 (ENSRNOG00000013201)
Upper Galilee mountains blind mole rat	MODERN SPECIES	486								Col6a4 (ENSNGAG00000002871)	Glyctk (ENSNGAG00000015339)	Wdr82 (ENSNGAG00000011331)	Ppm1m (ENSNGAG00000020492)	Twf2 (ENSNGAG00000005578)	Tlr9 (ENSNGAG00000001964)	Alas1 (ENSNGAG00000012714) #21	Poc1a (ENSNGAG00000005212)	Dusp7 (ENSNGAG00000020373) #22	ENSNGAG00000013381	Acy1 (ENSNGAG00000011594)	Abhd14a (ENSNGAG00000007170)	Abhd14b (ENSNGAG00000003301)	Pcbp4 (ENSNGAG00000013148)	Gpr62 (ENSNGAG00000009612)	Parp3 (ENSNGAG00000020533)	Rrp9 (ENSNGAG00000013829)	ENSNGAG00000012471	Iqcf5 (ENSNGAG00000009687)	Iqcf4 (ENSNGAG00000019517)	Iqcf6 (ENSNGAG00000014367)	Grm2 (ENSNGAG00000015786)	Tex264 (ENSNGAG00000002134)	Rad54l2 (ENSNGAG00000015629)
Lesser Egyptian jerboa	MODERN SPECIES	110	Nudt16l2 (ENSJJAG00000007494)	ENSJJAG00000018011	Aste1 (ENSJJAG00000015102)	Atp2c1 (ENSJJAG00000022986)	Pik3r4 (ENSJJAG00000014074)	Col6a6 (ENSJJAG00000013098)	ENSJJAG00000023523	ENSJJAG00000016050	ENSJJAG00000010915	ENSJJAG00000013690	Ppm1m (ENSJJAG00000000333)	Twf2 (ENSJJAG00000006789)	Tlr9 (ENSJJAG00000016253)	Alas1 (ENSJJAG00000000534) #21	Poc1a (ENSJJAG00000018739)	Dusp7 (ENSJJAG00000023817) #22	ENSJJAG00000021038	Acy1 (ENSJJAG00000020495)	Abhd14a (ENSJJAG00000013775)	Abhd14b (ENSJJAG00000014130)	Pcbp4 (ENSJJAG00000016235)	Gpr62 (ENSJJAG00000012462)	Parp3 (ENSJJAG00000018752)	Rrp9 (ENSJJAG00000013043)	Iqcf1 (ENSJJAG00000008567)	Iqcf5 (ENSJJAG00000015996)	ENSJJAG00000013442	Iqcf6 (ENSJJAG00000017075)	Grm2 (ENSJJAG00000019080)	Tex264 (ENSJJAG00000018116)	Rad54l2 (ENSJJAG00000014332)
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000170609	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000164180	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000170609	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000170609	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000162990	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Guinea pig	MODERN SPECIES	8	ENSCPOG00000040811	ENSCPOG00000005684	ASTE1 (ENSCPOG00000005681)	ATP2C1 (ENSCPOG00000005672)	PIK3R4 (ENSCPOG00000007515)	COL6A6 (ENSCPOG00000007512)	COL6A5 (ENSCPOG00000007514)	ENSCPOG00000036122	GLYCTK (ENSCPOG00000035544)	WDR82 (ENSCPOG00000010513)	PPM1M (ENSCPOG00000010509)	TWF2 (ENSCPOG00000022559)	TLR9 (ENSCPOG00000034913)	ALAS1 (ENSCPOG00000019894) #21	POC1A (ENSCPOG00000006740)	DUSP7 (ENSCPOG00000006731) #22	RPL29 (ENSCPOG00000011738)	ACY1 (ENSCPOG00000022774)	ABHD14A (ENSCPOG00000003384)	ABHD14B (ENSCPOG00000003383)	PCBP4 (ENSCPOG00000014617)	GPR62 (ENSCPOG00000023691)	PARP3 (ENSCPOG00000013871)	RRP9 (ENSCPOG00000013864)	ENSCPOG00000004545	IQCF5 (ENSCPOG00000025215)	IQCF6 (ENSCPOG00000021711)	GRM2 (ENSCPOG00000005948)	TEX264 (ENSCPOG00000005947)	RAD54L2 (ENSCPOG00000005941)	DCAF1 (ENSCPOG00000006180)
Hystricomorpha_b	ANCESTRAL SPECIES	63									ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Degu	MODERN SPECIES	49	EXOC3 (ENSODEG00000018394)	AHRR (ENSODEG00000018258)	ENSODEG00000018234	PDCD6 (ENSODEG00000018264)	SDHA (ENSODEG00000018317)	CCDC127 (ENSODEG00000018314)	LRRC14B (ENSODEG00000018256)	GLYCTK (ENSODEG00000018246)	WDR82 (ENSODEG00000018304)	PPM1M (ENSODEG00000018248)	TWF2 (ENSODEG00000018443)	TLR9 (ENSODEG00000018236)	ALAS1 (ENSODEG00000018438) #21	ENSODEG00000018273	POC1A (ENSODEG00000018290)	DUSP7 (ENSODEG00000018426) #22	ENSODEG00000018318	ACY1 (ENSODEG00000018276)	ABHD14A (ENSODEG00000018306)	ABHD14B (ENSODEG00000018429)	PCBP4 (ENSODEG00000018230)	GPR62 (ENSODEG00000020554)	PARP3 (ENSODEG00000018243)	RRP9 (ENSODEG00000018323)	ENSODEG00000018223	ENSODEG00000018287	IQCF5 (ENSODEG00000018253)	ENSODEG00000020485	ENSODEG00000018233	ENSODEG00000018238	IQCF6 (ENSODEG00000018272)
Long-tailed chinchilla	MODERN SPECIES	239							GLYCTK (ENSCLAG00000010584)	ENSCLAG00000011466	ENSCLAG00000017719	WDR82 (ENSCLAG00000008938)	PPM1M (ENSCLAG00000009829)	TWF2 (ENSCLAG00000012465)	TLR9 (ENSCLAG00000010935)	ALAS1 (ENSCLAG00000008121) #21	POC1A (ENSCLAG00000010593)	DUSP7 (ENSCLAG00000009251) #22	RPL29 (ENSCLAG00000011185)	ACY1 (ENSCLAG00000011698)	ABHD14A (ENSCLAG00000009972)	ABHD14B (ENSCLAG00000010388)	PCBP4 (ENSCLAG00000008356)	PARP3 (ENSCLAG00000008398)	RRP9 (ENSCLAG00000007373)	ENSCLAG00000010673	IQCF5 (ENSCLAG00000009338)	IQCF2 (ENSCLAG00000008826)	IQCF3 (ENSCLAG00000008873)	ENSCLAG00000015129	IQCF6 (ENSCLAG00000015197)	GRM2 (ENSCLAG00000009387)	TEX264 (ENSCLAG00000007354)
Naked mole-rat female	MODERN SPECIES	27	ATP2C1 (ENSHGLG00000013442)	ENSHGLG00000001131	ENSHGLG00000014315	ENSHGLG00000013352	ENSHGLG00000043274	ENSHGLG00000038223	ENSHGLG00000049624	ENSHGLG00000002576	Cnbp (ENSHGLG00000050600) #28	GLYCTK (ENSHGLG00000032958)	ENSHGLG00000047682	PPM1M (ENSHGLG00000012659)	TLR9 (ENSHGLG00000012542)	ALAS1 (ENSHGLG00000011920) #21	POC1A (ENSHGLG00000013436)	DUSP7 (ENSHGLG00000012823) #22	ENSHGLG00000012678	ACY1 (ENSHGLG00000012497)	ABHD14B (ENSHGLG00000012174)	ABHD14A (ENSHGLG00000012344)	PCBP4 (ENSHGLG00000012018)	GPR62 (ENSHGLG00000020795)	PARP3 (ENSHGLG00000011511)	RRP9 (ENSHGLG00000011297)	ENSHGLG00000037113	ENSHGLG00000042803	ENSHGLG00000041186	IQCF2 (ENSHGLG00000035521)	IQCF3 (ENSHGLG00000011788)	ENSHGLG00000013109	ENSHGLG00000048827
Sciuridae	ANCESTRAL SPECIES	26	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000164180	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.o.c	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	1	ASTE1 (ENSSVLG00005011522)	ATP2C1 (ENSSVLG00005010986)	PIK3R4 (ENSSVLG00005010873)	COL6A6 (ENSSVLG00005010559)	COL6A5 (ENSSVLG00005010274)	ENSSVLG00005010207	ENSSVLG00005010084	GLYCTK (ENSSVLG00005009986)	WDR82 (ENSSVLG00005009931)	PPM1M (ENSSVLG00005009850)	TWF2 (ENSSVLG00005009790)	TLR9 (ENSSVLG00005009760)	ENSSVLG00005009727	ALAS1 (ENSSVLG00005009684) #21	POC1A (ENSSVLG00005009543)	ENSSVLG00005009489 #22	ENSSVLG00005009427	ACY1 (ENSSVLG00005009239)	ABHD14A (ENSSVLG00005009135)	ABHD14B (ENSSVLG00005009083)	PCBP4 (ENSSVLG00005009026)	GPR62 (ENSSVLG00005008996)	PARP3 (ENSSVLG00005008908)	RRP9 (ENSSVLG00005008856)	IQCF1 (ENSSVLG00005008806)	IQCF5 (ENSSVLG00005008788)	IQCF2 (ENSSVLG00005008757)	ENSSVLG00005008742	IQCF3 (ENSSVLG00005008717)	ENSSVLG00005008698	ENSSVLG00005008681
Eurasian red squirrel	MODERN SPECIES	46															ENSSVLG00005019499	ENSSVLG00005019397 #22	ENSSVLG00005019310	ENSSVLG00005019249	ENSSVLG00005019121	ENSSVLG00005019079
Marmotini	ANCESTRAL SPECIES	25	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000164180	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.f.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.o.d	ENSGT00390000004641.a.a.a.a.o.c	ENSGT00390000004641.a.b
Alpin marmot	MODERN SPECIES	19	NEK11 (ENSMMMG00000000271)	ASTE1 (ENSMMMG00000000324)	ENSMMMG00000000365	PIK3R4 (ENSMMMG00000000524)	COL6A6 (ENSMMMG00000000608)	COL6A5 (ENSMMMG00000000877)	ENSMMMG00000001059	ENSMMMG00000001065	GLYCTK (ENSMMMG00000001083)	WDR82 (ENSMMMG00000001100)	PPM1M (ENSMMMG00000001125)	TWF2 (ENSMMMG00000001160)	TLR9 (ENSMMMG00000001186)	ALAS1 (ENSMMMG00000001195) #21	POC1A (ENSMMMG00000001222)	DUSP7 (ENSMMMG00000001268) #22	ENSMMMG00000001277	ACY1 (ENSMMMG00000001317)	ABHD14A (ENSMMMG00000001484)	ABHD14B (ENSMMMG00000001513)	PCBP4 (ENSMMMG00000001542)	PARP3 (ENSMMMG00000001555)	RRP9 (ENSMMMG00000001606)	IQCF1 (ENSMMMG00000001678)	IQCF5 (ENSMMMG00000001690)	ENSMMMG00000001703	ENSMMMG00000001714	ENSMMMG00000001724	IQCF6 (ENSMMMG00000001734)	GRM2 (ENSMMMG00000001746)	TEX264 (ENSMMMG00000001783)
Marmotini_b	ANCESTRAL SPECIES	32	ENSGT00390000016224.j.a.c.b.b	ENSGT00940000160525	ENSGT00390000010145.c.b	ENSGT00940000156421	ENSGT00390000016225	ENSGT00940000155619	ENSGT00940000164180	ENSGT00940000163168	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d.f.b.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.o.d	ENSGT00390000004641.a.a.a.a.o.c	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Squirrel	MODERN SPECIES	44																ENSSTOG00000033699 #22
Arctic ground squirrel	MODERN SPECIES	26	NEK11 (ENSUPAG00010022335)	ASTE1 (ENSUPAG00010022349)	ATP2C1 (ENSUPAG00010022353)	PIK3R4 (ENSUPAG00010022374)	COL6A6 (ENSUPAG00010022380)	COL6A5 (ENSUPAG00010022393)	ENSUPAG00010022403	ENSUPAG00010022404	GLYCTK (ENSUPAG00010022409)	WDR82 (ENSUPAG00010022411)	PPM1M (ENSUPAG00010022412)	TWF2 (ENSUPAG00010022414)	TLR9 (ENSUPAG00010022416)	ALAS1 (ENSUPAG00010022417) #21	POC1A (ENSUPAG00010022421)	DUSP7 (ENSUPAG00010022425) #22	ENSUPAG00010022427	ENSUPAG00010022429	ACY1 (ENSUPAG00010022434)	ABHD14B (ENSUPAG00010022440)	PCBP4 (ENSUPAG00010022442)	GPR62 (ENSUPAG00010022443)	PARP3 (ENSUPAG00010022445)	RRP9 (ENSUPAG00010022446)	IQCF1 (ENSUPAG00010022447)	IQCF5 (ENSUPAG00010022448)	IQCF2 (ENSUPAG00010022449)	ENSUPAG00010022451	ENSUPAG00010022452	IQCF6 (ENSUPAG00010022453)	GRM2 (ENSUPAG00010022454)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157262 #22
Hedgehog	MODERN SPECIES	15540																DUSP7 (ENSEEUG00000005458) #22
Common shrew	MODERN SPECIES	10515																DUSP7 (ENSSARG00000011974) #22
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.a	ENSGT00390000007084.c.b.y	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b
Canidae	ANCESTRAL SPECIES		ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.y	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.h	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.g	ENSGT00390000004641.a.b
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.y	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.h	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.g	ENSGT00390000004641.a.b
Dingo	MODERN SPECIES	401	STAB1 (ENSCAFG00020000581)	NISCH (ENSCAFG00020000534)	TNNC1 (ENSCAFG00020000532) ##23	SEMA3G (ENSCAFG00020000517)	PHF7 (ENSCAFG00020000421)	BAP1 (ENSCAFG00020000402)	ENSCAFG00020000284	ENSCAFG00020000189	GLYCTK (ENSCAFG00020000139)	WDR82 (ENSCAFG00020000113)	PPM1M (ENSCAFG00020000106)	TWF2 (ENSCAFG00020000089)	TLR9 (ENSCAFG00020022384)	ALAS1 (ENSCAFG00020022382) #21	POC1A (ENSCAFG00020022379)	DUSP7 (ENSCAFG00020022378) #22	ENSCAFG00020022376	ACY1 (ENSCAFG00020022370)	ABHD14A (ENSCAFG00020022367)	ABHD14B (ENSCAFG00020022366)	PCBP4 (ENSCAFG00020022361)	GPR62 (ENSCAFG00020022360)	PARP3 (ENSCAFG00020022357)	RRP9 (ENSCAFG00020022355)	IQCF1 (ENSCAFG00020022353)	IQCF5 (ENSCAFG00020022351)	ENSCAFG00020022348	ENSCAFG00020022346	IQCF6 (ENSCAFG00020022344)	GRM2 (ENSCAFG00020022339)	TEX264 (ENSCAFG00020022334)
Red fox	MODERN SPECIES	5	STAB1 (ENSVVUG00000026125)	NISCH (ENSVVUG00000026172)	TNNC1 (ENSVVUG00000026216) ##23	SEMA3G (ENSVVUG00000026235)	PHF7 (ENSVVUG00000026368)	BAP1 (ENSVVUG00000026411)	DNAH1 (ENSVVUG00000026510)	GLYCTK (ENSVVUG00000026824)	WDR82 (ENSVVUG00000026827)	ENSVVUG00000026831	PPM1M (ENSVVUG00000026832)	TWF2 (ENSVVUG00000026837)	TLR9 (ENSVVUG00000026842)	ALAS1 (ENSVVUG00000026843) #21	POC1A (ENSVVUG00000026847)	DUSP7 (ENSVVUG00000026848) #22	ACY1 (ENSVVUG00000026850)	ABHD14A (ENSVVUG00000026854)	ABHD14B (ENSVVUG00000026856)	PCBP4 (ENSVVUG00000026857)	GPR62 (ENSVVUG00000026859)	PARP3 (ENSVVUG00000026860)	RRP9 (ENSVVUG00000026861)	IQCF1 (ENSVVUG00000026863)	IQCF5 (ENSVVUG00000026864)	IQCF3 (ENSVVUG00000026865)	ENSVVUG00000026866	IQCF6 (ENSVVUG00000026867)	GRM2 (ENSVVUG00000026868)	TEX264 (ENSVVUG00000026870)	RAD54L2 (ENSVVUG00000026874)
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791.t	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
American mink	MODERN SPECIES	47	NT5DC2 (ENSNVIG00000023268)	STAB1 (ENSNVIG00000023305)	NISCH (ENSNVIG00000023327)	TNNC1 (ENSNVIG00000000035) ##23	SEMA3G (ENSNVIG00000000048)	PHF7 (ENSNVIG00000000111)	BAP1 (ENSNVIG00000000174)	DNAH1 (ENSNVIG00000000253)	GLYCTK (ENSNVIG00000000339)	WDR82 (ENSNVIG00000000350)	ENSNVIG00000000396	TWF2 (ENSNVIG00000000427)	TLR9 (ENSNVIG00000000466)	ALAS1 (ENSNVIG00000000473) #21	POC1A (ENSNVIG00000000498)	DUSP7 (ENSNVIG00000000525) #22	RPL29 (ENSNVIG00000000529)	ACY1 (ENSNVIG00000000589)	ABHD14B (ENSNVIG00000000837)	PCBP4 (ENSNVIG00000000868)	GPR62 (ENSNVIG00000000950)	PARP3 (ENSNVIG00000000957)	U3IP2 (ENSNVIG00000000968)	IQCF1 (ENSNVIG00000000998)	IQCF5 (ENSNVIG00000001011)	IQCF2 (ENSNVIG00000001019)	IQCF3 (ENSNVIG00000001033)	ENSNVIG00000001057	IQCF6 (ENSNVIG00000001077)	GRM2 (ENSNVIG00000001091)	TEX264 (ENSNVIG00000001117)
Ferret	MODERN SPECIES	497								ENSMPUG00000011622	ENSMPUG00000011626	GLYCTK (ENSMPUG00000011631)	WDR82 (ENSMPUG00000011651)	PPM1M (ENSMPUG00000011700)	TLR9 (ENSMPUG00000011709)	ALAS1 (ENSMPUG00000011714) #21	POC1A (ENSMPUG00000011723)	DUSP7 (ENSMPUG00000011729) #22	ENSMPUG00000011734	ACY1 (ENSMPUG00000011748)	ABHD14A (ENSMPUG00000011754)	ABHD14B (ENSMPUG00000011760)	PCBP4 (ENSMPUG00000011766)	GPR62 (ENSMPUG00000011773)	PARP3 (ENSMPUG00000011779)	RRP9 (ENSMPUG00000011784)	IQCF1 (ENSMPUG00000011795)	IQCF5 (ENSMPUG00000011802)	IQCF2 (ENSMPUG00000011807)	ENSMPUG00000011818	IQCF6 (ENSMPUG00000011829)	GRM2 (ENSMPUG00000011831)	TEX264 (ENSMPUG00000011838)
Ursidae	ANCESTRAL SPECIES	11	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B.b ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711.b	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.f	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.e	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Giant Panda	MODERN SPECIES	14	NT5DC2 (ENSAMEG00000008538)	STAB1 (ENSAMEG00000008575)	NISCH (ENSAMEG00000008715)	TNNC1 (ENSAMEG00000008763) ##23	SEMA3G (ENSAMEG00000008782)	PHF7 (ENSAMEG00000008872)	BAP1 (ENSAMEG00000008887)	DNAH1 (ENSAMEG00000008937)	GLYCTK (ENSAMEG00000009008)	WDR82 (ENSAMEG00000009017)	PPM1M (ENSAMEG00000009047)	TWF2 (ENSAMEG00000023622)	TLR9 (ENSAMEG00000009061)	ALAS1 (ENSAMEG00000009102) #21	POC1A (ENSAMEG00000009136)	DUSP7 (ENSAMEG00000009156) #22	ENSAMEG00000017772	ACY1 (ENSAMEG00000009166)	ABHD14A (ENSAMEG00000023863)	ABHD14B (ENSAMEG00000009202)	PCBP4 (ENSAMEG00000009211)	PARP3 (ENSAMEG00000009256)	RRP9 (ENSAMEG00000009258)	IQCF1 (ENSAMEG00000009279)	IQCF5 (ENSAMEG00000028981)	IQCF2 (ENSAMEG00000009280)	ENSAMEG00000024427	IQCF3 (ENSAMEG00000009286)	ENSAMEG00000029474	IQCF6 (ENSAMEG00000020155)	GRM2 (ENSAMEG00000009293)
Ursus	ANCESTRAL SPECIES	5	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B.b ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365.i	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.a	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711.b	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.f	ENSGT00390000004641.a.a.a.a.e	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901
American black bear	MODERN SPECIES	493												TWF2 (ENSUAMG00000020812)	TLR9 (ENSUAMG00000020813)	ALAS1 (ENSUAMG00000020815) #21	POC1A (ENSUAMG00000020816)	DUSP7 (ENSUAMG00000020819) #22	ACY1 (ENSUAMG00000020823)	ABHD14A (ENSUAMG00000020869)	ABHD14B (ENSUAMG00000020870)	PCBP4 (ENSUAMG00000020871)	PARP3 (ENSUAMG00000020872)	RRP9 (ENSUAMG00000020873)	IQCF1 (ENSUAMG00000020875)	IQCF5 (ENSUAMG00000020876)	ENSUAMG00000020877	ENSUAMG00000020879	ENSUAMG00000020880	IQCF6 (ENSUAMG00000020881)	GRM2 (ENSUAMG00000020882)	TEX264 (ENSUAMG00000020883)	RAD54L2 (ENSUAMG00000020891)
Polar bear	MODERN SPECIES	255	UQCC5 (ENSUMAG00000021322)	NT5DC2 (ENSUMAG00000021325)	ENSUMAG00000021338	ENSUMAG00000021358	TNNC1 (ENSUMAG00000021362) ##23	SEMA3G (ENSUMAG00000021371)	PHF7 (ENSUMAG00000021394)	BAP1 (ENSUMAG00000021397)	DNAH1 (ENSUMAG00000021417)	GLYCTK (ENSUMAG00000021446)	WDR82 (ENSUMAG00000021456)	PPM1M (ENSUMAG00000021462)	TWF2 (ENSUMAG00000021475)	ALAS1 (ENSUMAG00000021481) #21	POC1A (ENSUMAG00000021482)	DUSP7 (ENSUMAG00000021487) #22	ENSUMAG00000021488	ACY1 (ENSUMAG00000021533)	ABHD14A (ENSUMAG00000021604)	ABHD14B (ENSUMAG00000021606)	PCBP4 (ENSUMAG00000021609)	PARP3 (ENSUMAG00000021616)	RRP9 (ENSUMAG00000021648)	IQCF1 (ENSUMAG00000021655)	IQCF5 (ENSUMAG00000021657)	ENSUMAG00000021658	ENSUMAG00000021660	ENSUMAG00000021661	IQCF6 (ENSUMAG00000021662)	GRM2 (ENSUMAG00000021663)	TEX264 (ENSUMAG00000021665)
Felidae	ANCESTRAL SPECIES	17	ENSGT00940000157928	ENSGT00980000202914	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Cat	MODERN SPECIES	1	STAB1 (ENSFCAG00000015716)	ENSFCAG00000049121	NISCH (ENSFCAG00000015715)	TNNC1 (ENSFCAG00000015714) ##23	SEMA3G (ENSFCAG00000015713)	PHF7 (ENSFCAG00000015712)	BAP1 (ENSFCAG00000015711)	DNAH1 (ENSFCAG00000015710)	GLYCTK (ENSFCAG00000015709)	WDR82 (ENSFCAG00000024181)	PPM1M (ENSFCAG00000015707)	TWF2 (ENSFCAG00000024069)	TLR9 (ENSFCAG00000035015)	ALAS1 (ENSFCAG00000015705) #21	POC1A (ENSFCAG00000015704)	DUSP7 (ENSFCAG00000009151) #22	RPL29 (ENSFCAG00000001762)	ACY1 (ENSFCAG00000023226)	ABHD14A (ENSFCAG00000009150)	ABHD14B (ENSFCAG00000009149)	PCBP4 (ENSFCAG00000009148)	GPR62 (ENSFCAG00000009147)	PARP3 (ENSFCAG00000009146)	RRP9 (ENSFCAG00000009145)	IQCF1 (ENSFCAG00000009142)	IQCF5 (ENSFCAG00000019068)	IQCF2 (ENSFCAG00000045325)	IQCF3 (ENSFCAG00000043666)	ENSFCAG00000040252	IQCF6 (ENSFCAG00000043482)	GRM2 (ENSFCAG00000006422)
Panthera	ANCESTRAL SPECIES	1	ENSGT00940000157928	ENSGT00980000202914	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000157928	ENSGT00980000202914	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.x.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
leopard	MODERN SPECIES	68	NT5DC2 (ENSPPRG00000016431)	STAB1 (ENSPPRG00000020606)	ENSPPRG00000022889	TNNC1 (ENSPPRG00000022823) ##23	SEMA3G (ENSPPRG00000000100)	PHF7 (ENSPPRG00000000226)	BAP1 (ENSPPRG00000000461)	DNAH1 (ENSPPRG00000001599)	GLYCTK (ENSPPRG00000002035)	WDR82 (ENSPPRG00000002136)	PPM1M (ENSPPRG00000002382)	TWF2 (ENSPPRG00000002589)	TLR9 (ENSPPRG00000002798)	ALAS1 (ENSPPRG00000003156) #21	POC1A (ENSPPRG00000003365)	DUSP7 (ENSPPRG00000003470) #22	ENSPPRG00000003581	ABHD14A (ENSPPRG00000003668)	ACY1 (ENSPPRG00000004901)	ABHD14B (ENSPPRG00000005388)	PCBP4 (ENSPPRG00000006165)	PARP3 (ENSPPRG00000006379)	RRP9 (ENSPPRG00000006530)	IQCF1 (ENSPPRG00000006621)	IQCF2 (ENSPPRG00000007006)	IQCF3 (ENSPPRG00000007041)	ENSPPRG00000007133	IQCF6 (ENSPPRG00000021453)	GRM2 (ENSPPRG00000007435)	TEX264 (ENSPPRG00000008436)	ENSPPRG00000009887
lion	MODERN SPECIES	2	STAB1 (ENSPLOG00000001763)	ENSPLOG00000001667	ENSPLOG00000001629	TNNC1 (ENSPLOG00000001593) ##23	SEMA3G (ENSPLOG00000001552)	PHF7 (ENSPLOG00000001512)	BAP1 (ENSPLOG00000001461)	DNAH1 (ENSPLOG00000001320)	GLYCTK (ENSPLOG00000001205)	WDR82 (ENSPLOG00000001170)	PPM1M (ENSPLOG00000001125)	TWF2 (ENSPLOG00000001066)	TLR9 (ENSPLOG00000001028)	ALAS1 (ENSPLOG00000001000) #21	POC1A (ENSPLOG00000000950)	DUSP7 (ENSPLOG00000000920) #22	ENSPLOG00000000898	ACY1 (ENSPLOG00000000643)	ABHD14A (ENSPLOG00000000458)	ABHD14B (ENSPLOG00000000425)	PCBP4 (ENSPLOG00000000367)	GPR62 (ENSPLOG00000000343)	PARP3 (ENSPLOG00000000318)	RRP9 (ENSPLOG00000000275)	IQCF1 (ENSPLOG00000000247)	IQCF5 (ENSPLOG00000000231)	IQCF2 (ENSPLOG00000000222)	IQCF3 (ENSPLOG00000000206)	IQCF6 (ENSPLOG00000000193)	ENSPLOG00000000183	GRM2 (ENSPLOG00000000169)
Tiger	MODERN SPECIES	165	PBRM1 (ENSPTIG00000010991)	UQCC5 (ENSPTIG00000017245)	NT5DC2 (ENSPTIG00000017851)	ENSPTIG00000009896	TNNC1 (ENSPTIG00000016758) ##23	SEMA3G (ENSPTIG00000017549)	PHF7 (ENSPTIG00000018673)	BAP1 (ENSPTIG00000002274)	GLYCTK (ENSPTIG00000021896)	WDR82 (ENSPTIG00000022028)	PPM1M (ENSPTIG00000022062)	TWF2 (ENSPTIG00000022089)	TLR9 (ENSPTIG00000000134)	ALAS1 (ENSPTIG00000001551) #21	POC1A (ENSPTIG00000005388)	DUSP7 (ENSPTIG00000009223) #22	ENSPTIG00000010526	ACY1 (ENSPTIG00000012331)	ABHD14A (ENSPTIG00000018788)	ABHD14B (ENSPTIG00000021106)	PCBP4 (ENSPTIG00000005401)	PARP3 (ENSPTIG00000012303)	RRP9 (ENSPTIG00000014976)	IQCF1 (ENSPTIG00000016797)	IQCF2 (ENSPTIG00000017298)	IQCF3 (ENSPTIG00000017794)	ENSPTIG00000018846	IQCF6 (ENSPTIG00000003975)	GRM2 (ENSPTIG00000019352)	TEX264 (ENSPTIG00000020551)	RAD54L2 (ENSPTIG00000002240)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b
Equus	ANCESTRAL SPECIES	5	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a.f	ENSGT00390000004641.a.a.b.a.e	ENSGT00390000004641.a.a.a.a.j	ENSGT00390000004641.a.a.a.a.i	ENSGT00390000004641.a.b
Horse	MODERN SPECIES	7	NISCH (ENSECAG00000007104)	TNNC1 (ENSECAG00000020452) ##23	SEMA3G (ENSECAG00000022121)	PHF7 (ENSECAG00000019268)	BAP1 (ENSECAG00000020681)	DNAH1 (ENSECAG00000000475)	ENSECAG00000058571	GLYCTK (ENSECAG00000012193)	WDR82 (ENSECAG00000039147)	PPM1M (ENSECAG00000012070)	ENSECAG00000051138	TWF2 (ENSECAG00000014047)	TLR9 (ENSECAG00000014294)	ALAS1 (ENSECAG00000014533) #21	POC1A (ENSECAG00000021302)	DUSP7 (ENSECAG00000024447) #22	RPL29 (ENSECAG00000007397)	ACY1 (ENSECAG00000010261)	ABHD14A (ENSECAG00000021312)	ABHD14B (ENSECAG00000053760)	RRP9 (ENSECAG00000024543)	GPR62 (ENSECAG00000017512)	PARP3 (ENSECAG00000018503)	IQCF5 (ENSECAG00000004597)	IQCF2 (ENSECAG00000041335)	ENSECAG00000004632	ENSECAG00000057040	ENSECAG00000039922	IQCF6 (ENSECAG00000030492)	GRM2 (ENSECAG00000009276)	TEX264 (ENSECAG00000013885)
Donkey	MODERN SPECIES	13	NT5DC2 (ENSEASG00005013178)	STAB1 (ENSEASG00005013117)	NISCH (ENSEASG00005013056)	TNNC1 (ENSEASG00005031072) ##23	SEMA3G (ENSEASG00005013045)	PHF7 (ENSEASG00005013042)	BAP1 (ENSEASG00005013039)	DNAH1 (ENSEASG00005012971)	GLYCTK (ENSEASG00005012939)	WDR82 (ENSEASG00005012933)	PPM1M (ENSEASG00005012932)	TWF2 (ENSEASG00005012916)	TLR9 (ENSEASG00005024871)	ALAS1 (ENSEASG00005012907) #21	POC1A (ENSEASG00005012903)	DUSP7 (ENSEASG00005012901) #22	ENSEASG00005032395	RPL29 (ENSEASG00005034697)	ACY1 (ENSEASG00005012897)	ABHD14A (ENSEASG00005012894)	ABHD14B (ENSEASG00005030637)	PCBP4 (ENSEASG00005012889)	GPR62 (ENSEASG00005038219)	PARP3 (ENSEASG00005012886)	RRP9 (ENSEASG00005012882)	IQCF1 (ENSEASG00005012881)	IQCF5 (ENSEASG00005012880)	ENSEASG00005028905	ENSEASG00005012878	ENSEASG00005012877	ENSEASG00005025640
Chiroptera	ANCESTRAL SPECIES	19												ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.d	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Megabat	MODERN SPECIES	2364												TWF2 (ENSPVAG00000024172)	TLR9 (ENSPVAG00000012482)	ALAS1 (ENSPVAG00000012481) #21	POC1A (ENSPVAG00000012480)	DUSP7 (ENSPVAG00000012479) #22	ENSPVAG00000012478	ACY1 (ENSPVAG00000012477)	ABHD14A (ENSPVAG00000012476)	ABHD14B (ENSPVAG00000012475)	PCBP4 (ENSPVAG00000012474)	GPR62 (ENSPVAG00000012473)	PARP3 (ENSPVAG00000012472)	RRP9 (ENSPVAG00000012471)	IQCF1 (ENSPVAG00000012469)	IQCF5 (ENSPVAG00000012468)
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00940000155198.C	ENSGT00940000160890	ENSGT00390000009678	ENSGT00390000016404	ENSGT00940000157154.d	ENSGT00940000162663	ENSGT00390000008983.a	ENSGT00940000155071.E	ENSGT00940000158384	ENSGT00940000154861	ENSGT00940000157717	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Greater horseshoe bat	MODERN SPECIES	8	CNTN4 (ENSRFEG00010012870)	IL5RA (ENSRFEG00010012950)	TRNT1 (ENSRFEG00010013326)	CRBN (ENSRFEG00010013551)	LRRN1 (ENSRFEG00010013770)	SUMF1 (ENSRFEG00010013803)	ENSRFEG00010014043	ITPR1 (ENSRFEG00010014134)	BHLHE40 (ENSRFEG00010014606)	ARL8B (ENSRFEG00010014676)	EDEM1 (ENSRFEG00010014776)	TWF2 (ENSRFEG00010014959)	TLR9 (ENSRFEG00010015047)	ALAS1 (ENSRFEG00010015102) #21	POC1A (ENSRFEG00010015173)	DUSP7 (ENSRFEG00010015305) #22	ENSRFEG00010015354	ACY1 (ENSRFEG00010015466)	ABHD14A (ENSRFEG00010015875)	ABHD14B (ENSRFEG00010015992)	PCBP4 (ENSRFEG00010016071)	ENSRFEG00010016188	ENSRFEG00010016203	ENSRFEG00010016439	IQCF1 (ENSRFEG00010016657)	ENSRFEG00010016711	ENSRFEG00010016769	ENSRFEG00010016819	IQCF5 (ENSRFEG00010017249)	ENSRFEG00010017307	ENSRFEG00010017363
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1181	LSR (ENSMLUG00000029908)	USF2 (ENSMLUG00000028063)	HAMP (ENSMLUG00000006207)	MAG (ENSMLUG00000024023)	ENSMLUG00000025953	CD22 (ENSMLUG00000011794)	FFAR1 (ENSMLUG00000027056)	ENSMLUG00000012400	FFAR2 (ENSMLUG00000012387)	KRTDAP (ENSMLUG00000016368)	DMKN (ENSMLUG00000016376)	SBSN (ENSMLUG00000017105)	ENSMLUG00000027122	TMEM147 (ENSMLUG00000016383)	ATP4A (ENSMLUG00000016393)	ENSMLUG00000023510 #22	HAUS5 (ENSMLUG00000016158)	RBM42 (ENSMLUG00000011334)	ETV2 (ENSMLUG00000011347)	ENSMLUG00000011365	UPK1A (ENSMLUG00000011378)	ZBTB32 (ENSMLUG00000011396)	KMT2B (ENSMLUG00000011406)	IGFLR1 (ENSMLUG00000011490)	PSENEN (ENSMLUG00000011528)	LIN37 (ENSMLUG00000011538)	ENSMLUG00000028307	PROSER3 (ENSMLUG00000029985)	ARHGAP33 (ENSMLUG00000011552)	PRODH2 (ENSMLUG00000028392)	NPHS1 (ENSMLUG00000013612)
Microbat	MODERN SPECIES	1744										ARL8B (ENSMLUG00000006964)	EDEM1 (ENSMLUG00000013139)	TLR9 (ENSMLUG00000015097)	ENSMLUG00000029556 #21	ENSMLUG00000025267	POC1A (ENSMLUG00000015092)	DUSP7 (ENSMLUG00000007085) #22	ENSMLUG00000015088	ACY1 (ENSMLUG00000015084)
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Suina	ANCESTRAL SPECIES	1	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Pig	MODERN SPECIES	4	NT5DC2 (ENSSSCG00000011444)	STAB1 (ENSSSCG00000011443)	NISCH (ENSSSCG00000011442)	TNNC1 (ENSSSCG00000011441) ##23	SEMA3G (ENSSSCG00000011440)	PHF7 (ENSSSCG00000011439)	BAP1 (ENSSSCG00000011438)	DNAH1 (ENSSSCG00000028184)	GLYCTK (ENSSSCG00000011432)	WDR82 (ENSSSCG00000011433)	PPM1M (ENSSSCG00000011434)	TWF2 (ENSSSCG00000011435)	TLR9 (ENSSSCG00000011436)	ALAS1 (ENSSSCG00000011437) #21	POC1A (ENSSSCG00000011426)	DUSP7 (ENSSSCG00000059013) #22	RPL29 (ENSSSCG00000027573)	ACY1 (ENSSSCG00000023325)	ABHD14A (ENSSSCG00000030229)	ABHD14B (ENSSSCG00000042259)	PCBP4 (ENSSSCG00000028446)	GPR62 (ENSSSCG00000048899)	PARP3 (ENSSSCG00000023033)	RRP9 (ENSSSCG00000023177)	IQCF1 (ENSSSCG00000029827)	IQCF5 (ENSSSCG00000029447)	IQCF2 (ENSSSCG00000057531)	ENSSSCG00000061857	IQCF3 (ENSSSCG00000060753)	ENSSSCG00000055414	IQCF6 (ENSSSCG00000051811)
Chacoan peccary	MODERN SPECIES	950	NT5DC2 (ENSCWAG00000015680)	STAB1 (ENSCWAG00000015199)	NISCH (ENSCWAG00000015107)	TNNC1 (ENSCWAG00000015048) ##23	SEMA3G (ENSCWAG00000014898)	PHF7 (ENSCWAG00000014727)	BAP1 (ENSCWAG00000014624)	DNAH1 (ENSCWAG00000014073)	GLYCTK (ENSCWAG00000013957)	WDR82 (ENSCWAG00000013919)	PPM1M (ENSCWAG00000013780)	TWF2 (ENSCWAG00000013706)	TLR9 (ENSCWAG00000013673)	ALAS1 (ENSCWAG00000013593) #21	POC1A (ENSCWAG00000013352)	DUSP7 (ENSCWAG00000013315) #22	ENSCWAG00000013259	ACY1 (ENSCWAG00000012845)	ABHD14A (ENSCWAG00000012695)	ABHD14B (ENSCWAG00000012648)	PCBP4 (ENSCWAG00000012535)	GPR62 (ENSCWAG00000012500)	PARP3 (ENSCWAG00000012452)	RRP9 (ENSCWAG00000012415)	IQCF1 (ENSCWAG00000012365)	IQCF5 (ENSCWAG00000012338)	IQCF2 (ENSCWAG00000012302)	IQCF3 (ENSCWAG00000012249)	ENSCWAG00000012222	IQCF6 (ENSCWAG00000012162)	GRM2 (ENSCWAG00000011986)
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Camelidae	ANCESTRAL SPECIES	7	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b.a	ENSGT00390000004641.a.b.b	ENSGT01030000234595.B.c.a	ENSGT00940000155763
Arabian camel	MODERN SPECIES	8	NT5DC2 (ENSCDRG00005009184)	STAB1 (ENSCDRG00005008460)	NISCH (ENSCDRG00005003758)	TNNC1 (ENSCDRG00005003430) ##23	SEMA3G (ENSCDRG00005003388)	PHF7 (ENSCDRG00005016459)	BAP1 (ENSCDRG00005016383)	DNAH1 (ENSCDRG00005016236)	GLYCTK (ENSCDRG00005016161)	WDR82 (ENSCDRG00005016057)	PPM1M (ENSCDRG00005016003)	TWF2 (ENSCDRG00005015927)	TLR9 (ENSCDRG00005015908)	ALAS1 (ENSCDRG00005015841) #21	POC1A (ENSCDRG00005015778)	DUSP7 (ENSCDRG00005015741) #22	ENSCDRG00005015696	ACY1 (ENSCDRG00005015207)	ABHD14A (ENSCDRG00005014437)	ABHD14B (ENSCDRG00005014358)	PCBP4 (ENSCDRG00005013970)	GPR62 (ENSCDRG00005013921)	PARP3 (ENSCDRG00005013845)	RRP9 (ENSCDRG00005013744)	IQCF1 (ENSCDRG00005013724)	IQCF3 (ENSCDRG00005013325)	ENSCDRG00005013294	ENSCDRG00005013235	IQCF6 (ENSCDRG00005013193)	GRM2 (ENSCDRG00005012975)	RAD54L2 (ENSCDRG00005012799)
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.ab	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.ab	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.ab	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.ab	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000011698.c.a.d
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.ab	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.b	ENSGT01030000234595.B.c.a	ENSGT00390000016901	ENSGT00940000155763	ENSGT00390000011698.c.a.d
Beluga whale	MODERN SPECIES	28	NT5DC2 (ENSDLEG00000021412)	STAB1 (ENSDLEG00000021435)	NISCH (ENSDLEG00000021546)	TNNC1 (ENSDLEG00000021578) ##23	SEMA3G (ENSDLEG00000021589)	PHF7 (ENSDLEG00000021600)	BAP1 (ENSDLEG00000021603)	DNAH1 (ENSDLEG00000021744)	GLYCTK (ENSDLEG00000021864)	WDR82 (ENSDLEG00000021865)	PPM1M (ENSDLEG00000021868)	TWF2 (ENSDLEG00000021869)	TLR9 (ENSDLEG00000021871)	ALAS1 (ENSDLEG00000021873) #21	POC1A (ENSDLEG00000021877)	DUSP7 (ENSDLEG00000021878) #22	RPL29 (ENSDLEG00000021882)	ACY1 (ENSDLEG00000021885)	ENSDLEG00000021892	PCBP4 (ENSDLEG00000021894)	GPR62 (ENSDLEG00000021898)	RRP9 (ENSDLEG00000021900)	ENSDLEG00000021902	IQCF5 (ENSDLEG00000021903)	IQCF2 (ENSDLEG00000021904)	ENSDLEG00000021907	GRM2 (ENSDLEG00000021908)	TEX264 (ENSDLEG00000021910)	RAD54L2 (ENSDLEG00000021912)	ENSDLEG00000021913	DCAF1 (ENSDLEG00000021914)
Narwhal	MODERN SPECIES	310	NT5DC2 (ENSMMNG00015011911)	STAB1 (ENSMMNG00015011774)	NISCH (ENSMMNG00015011666)	TNNC1 (ENSMMNG00015011608) ##23	SEMA3G (ENSMMNG00015011577)	PHF7 (ENSMMNG00015011541)	BAP1 (ENSMMNG00015011497)	DNAH1 (ENSMMNG00015011453)	GLYCTK (ENSMMNG00015011398)	WDR82 (ENSMMNG00015011378)	PPM1M (ENSMMNG00015011365)	TWF2 (ENSMMNG00015011342)	TLR9 (ENSMMNG00015011326)	ALAS1 (ENSMMNG00015011296) #21	POC1A (ENSMMNG00015011223)	DUSP7 (ENSMMNG00015011160) #22	ENSMMNG00015011121	ACY1 (ENSMMNG00015011040)	ABHD14A (ENSMMNG00015010926)	ABHD14B (ENSMMNG00015010906)	PCBP4 (ENSMMNG00015010878)	GPR62 (ENSMMNG00015010854)	RRP9 (ENSMMNG00015010827)	IQCF1 (ENSMMNG00015010797)	IQCF5 (ENSMMNG00015010780)	IQCF2 (ENSMMNG00015010764)	IQCF6 (ENSMMNG00015010741)	ENSMMNG00015010733	ENSMMNG00015010721	GRM2 (ENSMMNG00015010691)	TEX264 (ENSMMNG00015010652)
Vaquita	MODERN SPECIES	2	STAB1 (ENSPSNG00000005712)	ENSPSNG00000005940	TNNC1 (ENSPSNG00000005969) ##23	ENSPSNG00000005997	SEMA3G (ENSPSNG00000006026)	PHF7 (ENSPSNG00000006098)	BAP1 (ENSPSNG00000006193)	DNAH1 (ENSPSNG00000006331)	GLYCTK (ENSPSNG00000006648)	WDR82 (ENSPSNG00000006687)	PPM1M (ENSPSNG00000006731)	TWF2 (ENSPSNG00000006800)	TLR9 (ENSPSNG00000006840)	ALAS1 (ENSPSNG00000006863) #21	POC1A (ENSPSNG00000006909)	DUSP7 (ENSPSNG00000006958) #22	ENSPSNG00000007010	ACY1 (ENSPSNG00000007116)	ABHD14A (ENSPSNG00000007280)	ENSPSNG00000007307	PCBP4 (ENSPSNG00000007369)	GPR62 (ENSPSNG00000007429)	RRP9 (ENSPSNG00000007448)	ENSPSNG00000007492	IQCF1 (ENSPSNG00000007512)	IQCF5 (ENSPSNG00000007539)	IQCF2 (ENSPSNG00000007573)	IQCF6 (ENSPSNG00000007610)	GRM2 (ENSPSNG00000007653)	TEX264 (ENSPSNG00000007739)	RAD54L2 (ENSPSNG00000007811)
Dolphin	MODERN SPECIES	1497														ALAS1 (ENSTTRG00000016802) #21	POC1A (ENSTTRG00000016798)	DUSP7 (ENSTTRG00000016797) #22
Sperm whale	MODERN SPECIES	593																DUSP7 (ENSPCTG00005012395) #22
Blue whale	MODERN SPECIES	2	NT5DC2 (ENSBMSG00010008206)	ENSBMSG00010008094	ENSBMSG00010008078	TNNC1 (ENSBMSG00010008062) ##23	SEMA3G (ENSBMSG00010008050)	PHF7 (ENSBMSG00010008027)	BAP1 (ENSBMSG00010007980)	DNAH1 (ENSBMSG00010007924)	GLYCTK (ENSBMSG00010007857)	WDR82 (ENSBMSG00010007838)	PPM1M (ENSBMSG00010007822)	TWF2 (ENSBMSG00010007804)	TLR9 (ENSBMSG00010007790)	ALAS1 (ENSBMSG00010007762) #21	POC1A (ENSBMSG00010007739)	DUSP7 (ENSBMSG00010007721) #22	ENSBMSG00010007705	ACY1 (ENSBMSG00010007659)	ABHD14B (ENSBMSG00010007604)	PCBP4 (ENSBMSG00010007576)	GPR62 (ENSBMSG00010007553)	PARP3 (ENSBMSG00010007529)	RRP9 (ENSBMSG00010007510)	IQCF1 (ENSBMSG00010007503)	IQCF5 (ENSBMSG00010007494)	ENSBMSG00010007490	IQCF3 (ENSBMSG00010007479)	ENSBMSG00010007470	IQCF6 (ENSBMSG00010007464)	GRM2 (ENSBMSG00010007448)	TEX264 (ENSBMSG00010007420)
Pecora	ANCESTRAL SPECIES	17	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.d	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b
Yarkand deer	MODERN SPECIES	16	PBRM1 (ENSCHYG00000019130)	ENSCHYG00000018999	NT5DC2 (ENSCHYG00000018344)	NISCH (ENSCHYG00000017890)	TNNC1 (ENSCHYG00000017809) ##23	SEMA3G (ENSCHYG00000017733)	PHF7 (ENSCHYG00000017582)	BAP1 (ENSCHYG00000017423)	DNAH1 (ENSCHYG00000016725)	GLYCTK (ENSCHYG00000016533)	ENSCHYG00000016380	PPM1M (ENSCHYG00000016252)	TWF2 (ENSCHYG00000016042)	ALAS1 (ENSCHYG00000015922) #21	TLR9 (ENSCHYG00000015762)	DUSP7 (ENSCHYG00000015667) #22	ENSCHYG00000015558	ACY1 (ENSCHYG00000014802)	ABHD14A (ENSCHYG00000014566)	ABHD14B (ENSCHYG00000014486)	PCBP4 (ENSCHYG00000014304)	GPR62 (ENSCHYG00000014250)	PARP3 (ENSCHYG00000013999)	RRP9 (ENSCHYG00000013757)	IQCF1 (ENSCHYG00000026137)	IQCF5 (ENSCHYG00000026130)	IQCF2 (ENSCHYG00000026121)	ENSCHYG00000026109	ENSCHYG00000026101	ENSCHYG00000026089	ENSCHYG00000026083
Percora_a	ANCESTRAL SPECIES	19	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.d	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b
Siberian musk deer	MODERN SPECIES	1221	NT5DC2 (ENSMMSG00000009650)	ENSMMSG00000009406	NISCH (ENSMMSG00000009296)	TNNC1 (ENSMMSG00000009190) ##23	SEMA3G (ENSMMSG00000009129)	PHF7 (ENSMMSG00000009006)	BAP1 (ENSMMSG00000008841)	DNAH1 (ENSMMSG00000007681)	GLYCTK (ENSMMSG00000022817)	WDR82 (ENSMMSG00000022802)	PPM1M (ENSMMSG00000022785)	TWF2 (ENSMMSG00000022757)	TLR9 (ENSMMSG00000022746)	ALAS1 (ENSMMSG00000022729) #21	POC1A (ENSMMSG00000022706)	DUSP7 (ENSMMSG00000022695) #22	RPL29 (ENSMMSG00000022684)	ACY1 (ENSMMSG00000022558)	ABHD14A (ENSMMSG00000022524)	ABHD14B (ENSMMSG00000022509)	PCBP4 (ENSMMSG00000022460)	PARP3 (ENSMMSG00000022419)	RRP9 (ENSMMSG00000022391)	IQCF1 (ENSMMSG00000022377)	IQCF5 (ENSMMSG00000022369)	IQCF2 (ENSMMSG00000022361)	ENSMMSG00000022353	IQCF3 (ENSMMSG00000022339)	ENSMMSG00000022335	IQCF6 (ENSMMSG00000022319)	GRM2 (ENSMMSG00000022281)
Bovidae	ANCESTRAL SPECIES	19	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.d	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b
Caprinae	ANCESTRAL SPECIES	15	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388.l.a	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b.f	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.d	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b
Rambouillet Sheep	MODERN SPECIES	10	NT5DC2 (ENSOARG00020025653)	STAB1 (ENSOARG00020025691)	NISCH (ENSOARG00020025764)	TNNC1 (ENSOARG00020025771) ##23	SEMA3G (ENSOARG00020025776)	PHF7 (ENSOARG00020025787)	ENSOARG00020025798	DNAH1 (ENSOARG00020025802)	GLYCTK (ENSOARG00020025825)	WDR82 (ENSOARG00020025831)	PPM1M (ENSOARG00020025837)	TWF2 (ENSOARG00020025844)	TLR9 (ENSOARG00020025847)	ALAS1 (ENSOARG00020025852) #21	POC1A (ENSOARG00020025863)	DUSP7 (ENSOARG00020025876) #22	RPL29 (ENSOARG00020025879)	ACY1 (ENSOARG00020025889)	ABHD14A (ENSOARG00020025916)	ABHD14B (ENSOARG00020025922)	PCBP4 (ENSOARG00020025928)	GPR62 (ENSOARG00020025932)	PARP3 (ENSOARG00020025936)	RRP9 (ENSOARG00020025956)	IQCF1 (ENSOARG00020025988)	IQCF5 (ENSOARG00020025990)	IQCF2 (ENSOARG00020025993)	ENSOARG00020025997	IQCF3 (ENSOARG00020026001)	ENSOARG00020026003	IQCF6 (ENSOARG00020026006)
Goat	MODERN SPECIES	14	NT5DC2 (ENSCHIG00000023928)	ENSCHIG00000023133	NISCH (ENSCHIG00000017539)	TNNC1 (ENSCHIG00000019356) ##23	SEMA3G (ENSCHIG00000022875)	PHF7 (ENSCHIG00000012799)	ENSCHIG00000022028	DNAH1 (ENSCHIG00000013326)	GLYCTK (ENSCHIG00000008125)	ENSCHIG00000021650	PPM1M (ENSCHIG00000012893)	TWF2 (ENSCHIG00000014531)	TLR9 (ENSCHIG00000024325)	ALAS1 (ENSCHIG00000003148) #21	POC1A (ENSCHIG00000002571)	DUSP7 (ENSCHIG00000008697) #22	ACY1 (ENSCHIG00000016266)	ENSCHIG00000013811	ABHD14A (ENSCHIG00000019422)	ABHD14B (ENSCHIG00000022891)	PCBP4 (ENSCHIG00000012918)	GPR62 (ENSCHIG00000009690)	PARP3 (ENSCHIG00000016033)	RRP9 (ENSCHIG00000006900)	IQCF1 (ENSCHIG00000012135)	IQCF5 (ENSCHIG00000024040)	IQCF2 (ENSCHIG00000019615)	ENSCHIG00000019238	ENSCHIG00000024738	GRM2 (ENSCHIG00000013128)	TEX264 (ENSCHIG00000001878)
Bovinae	ANCESTRAL SPECIES	16	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.d	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b
American bison	MODERN SPECIES	3218	NT5DC2 (ENSBBBG00000015653)	ENSBBBG00000003438	ENSBBBG00000015590	TNNC1 (ENSBBBG00000003880) ##23	SEMA3G (ENSBBBG00000015571)	PHF7 (ENSBBBG00000006844)	BAP1 (ENSBBBG00000015502)	DNAH1 (ENSBBBG00000015469)	ENSBBBG00000015393	WDR82 (ENSBBBG00000015376)	PPM1M (ENSBBBG00000015368)	TWF2 (ENSBBBG00000015345)	TLR9 (ENSBBBG00000003495)	ALAS1 (ENSBBBG00000003505) #21	POC1A (ENSBBBG00000001285)	DUSP7 (ENSBBBG00000001340) #22	ENSBBBG00000001346	ACY1 (ENSBBBG00000001386)	ABHD14A (ENSBBBG00000015134)	ABHD14B (ENSBBBG00000015122)	PCBP4 (ENSBBBG00000015100)	PARP3 (ENSBBBG00000007556)	RRP9 (ENSBBBG00000014953)	IQCF1 (ENSBBBG00000003690)	IQCF5 (ENSBBBG00000003595)	IQCF2 (ENSBBBG00000003603)	ENSBBBG00000003615	IQCF3 (ENSBBBG00000003621)	ENSBBBG00000003633	IQCF6 (ENSBBBG00000014937)	ENSBBBG00000014934
Bos	ANCESTRAL SPECIES	16	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.d	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b
Bos_b	ANCESTRAL SPECIES	17	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b	ENSGT00940000160320.a.b
Hybrid Bos Indicus	MODERN SPECIES	14	NT5DC2 (ENSBIXG00005000227)	STAB1 (ENSBIXG00005008665)	NISCH (ENSBIXG00005006303)	TNNC1 (ENSBIXG00005008732) ##23	SEMA3G (ENSBIXG00005008748)	PHF7 (ENSBIXG00005000275)	BAP1 (ENSBIXG00005008843)	ENSBIXG00005008882	GLYCTK (ENSBIXG00005008937)	WDR82 (ENSBIXG00005008957)	PPM1M (ENSBIXG00005008974)	TWF2 (ENSBIXG00005008994)	TLR9 (ENSBIXG00005005362)	ALAS1 (ENSBIXG00005009028) #21	POC1A (ENSBIXG00005009078)	DUSP7 (ENSBIXG00005009102) #22	ENSBIXG00005009133	ACY1 (ENSBIXG00005009240)	ABHD14A (ENSBIXG00005009275)	PCBP4 (ENSBIXG00005009331)	GPR62 (ENSBIXG00005009351)	PARP3 (ENSBIXG00005000527)	RRP9 (ENSBIXG00005009580)	IQCF1 (ENSBIXG00005009601)	IQCF5 (ENSBIXG00005009611)	IQCF2 (ENSBIXG00005009626)	IQCF3 (ENSBIXG00005009639)	ENSBIXG00005009660	IQCF6 (ENSBIXG00005000549)	ENSBIXG00005009694	GRM2 (ENSBIXG00005009720)
Cow	MODERN SPECIES	14	STAB1 (ENSBTAG00000014782)	NISCH (ENSBTAG00000014779)	TNNC1 (ENSBTAG00000045757) ##23	SEMA3G (ENSBTAG00000046924)	PHF7 (ENSBTAG00000047658)	BAP1 (ENSBTAG00000045817)	DNAH1 (ENSBTAG00000047794)	ENSBTAG00000054920	GLYCTK (ENSBTAG00000021695)	WDR82 (ENSBTAG00000002960)	PPM1M (ENSBTAG00000002962)	TWF2 (ENSBTAG00000054131)	TLR9 (ENSBTAG00000018198)	ALAS1 (ENSBTAG00000004118) #21	POC1A (ENSBTAG00000001471)	DUSP7 (ENSBTAG00000021912) #22	RPL29 (ENSBTAG00000018628)	ACY1 (ENSBTAG00000032304)	ABHD14A (ENSBTAG00000053854)	ABHD14B (ENSBTAG00000037377)	PCBP4 (ENSBTAG00000018622)	GPR62 (ENSBTAG00000013442)	PARP3 (ENSBTAG00000000671)	RRP9 (ENSBTAG00000000670)	IQCF2 (ENSBTAG00000032279)	IQCF1 (ENSBTAG00000000805)	IQCF5 (ENSBTAG00000040574)	ENSBTAG00000054379	ENSBTAG00000037410	IQCF6 (ENSBTAG00000045942)	ENSBTAG00000039664
Bos_a	ANCESTRAL SPECIES	9	ENSGT00940000159940	ENSGT00940000157928	ENSGT00940000156494	ENSGT00940000153541.B ##23	ENSGT00940000157677	ENSGT00950000182865.a	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000162493	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084.c.b.db.b	ENSGT00940000155631	ENSGT00940000161296	ENSGT00940000159388	ENSGT00940000159711	ENSGT00950000182998.D	ENSGT00940000158855	ENSGT00940000158328	ENSGT00390000004641.a.a.a.b.b	ENSGT00390000004641.a.a.a.b.a	ENSGT00390000004641.a.a.b.a	ENSGT00390000004641.a.a.a.a.d	ENSGT00390000004641.a.a.b.b	ENSGT00390000004641.a.a.a.a.c	ENSGT00390000004641.a.b
Wild yak	MODERN SPECIES	3257																ENSBMUG00000013412 #22
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	14	STAB1 (ENSBGRG00000009361)	NISCH (ENSBGRG00000009033)	TNNC1 (ENSBGRG00000008957) ##23	SEMA3G (ENSBGRG00000008759)	PHF7 (ENSBGRG00000008600)	ENSBGRG00000008566	ENSBGRG00000008244	DNAH1 (ENSBGRG00000008005)	GLYCTK (ENSBGRG00000007824)	WDR82 (ENSBGRG00000007697)	PPM1M (ENSBGRG00000007494)	TWF2 (ENSBGRG00000007391)	TLR9 (ENSBGRG00000007329)	ALAS1 (ENSBGRG00000007235) #21	POC1A (ENSBGRG00000006902)	ENSBGRG00000026045 #22	ENSBGRG00000026040 #22	ENSBGRG00000026033	ACY1 (ENSBGRG00000025966)	ABHD14A (ENSBGRG00000025940)	ABHD14B (ENSBGRG00000025930)	PCBP4 (ENSBGRG00000025906)	GPR62 (ENSBGRG00000025895)	PARP3 (ENSBGRG00000025863)	RRP9 (ENSBGRG00000025851)	ENSBGRG00000025846	IQCF5 (ENSBGRG00000025838)	IQCF2 (ENSBGRG00000025834)	ENSBGRG00000025830	IQCF3 (ENSBGRG00000025823)	ENSBGRG00000025821
Domestic yak	MODERN SPECIES	14	NISCH (ENSBGRG00000009033)	TNNC1 (ENSBGRG00000008957) ##23	SEMA3G (ENSBGRG00000008759)	PHF7 (ENSBGRG00000008600)	ENSBGRG00000008566	ENSBGRG00000008244	DNAH1 (ENSBGRG00000008005)	GLYCTK (ENSBGRG00000007824)	WDR82 (ENSBGRG00000007697)	PPM1M (ENSBGRG00000007494)	TWF2 (ENSBGRG00000007391)	TLR9 (ENSBGRG00000007329)	ALAS1 (ENSBGRG00000007235) #21	POC1A (ENSBGRG00000006902)	ENSBGRG00000026045 #22	ENSBGRG00000026040 #22	ENSBGRG00000026033	ACY1 (ENSBGRG00000025966)	ABHD14A (ENSBGRG00000025940)	ABHD14B (ENSBGRG00000025930)	PCBP4 (ENSBGRG00000025906)	GPR62 (ENSBGRG00000025895)	PARP3 (ENSBGRG00000025863)	RRP9 (ENSBGRG00000025851)	ENSBGRG00000025846	IQCF5 (ENSBGRG00000025838)	IQCF2 (ENSBGRG00000025834)	ENSBGRG00000025830	IQCF3 (ENSBGRG00000025823)	ENSBGRG00000025821	IQCF6 (ENSBGRG00000025816)
Platypus	MODERN SPECIES	85	GFPT2 (ENSOANG00000010227)	CNOT6 (ENSOANG00000010226)	ADAMTS2 (ENSOANG00000010225)	ENSOANG00000010223	ENSOANG00000010222	ENSOANG00000010221	CANX (ENSOANG00000013590)	MAML1 (ENSOANG00000013589)	LTC4S (ENSOANG00000045177)	MGAT4B (ENSOANG00000013588)	SQSTM1 (ENSOANG00000014851)	ENSOANG00000039463	ENSOANG00000036131	ALAS1 (ENSOANG00000014853) #21	POC1A (ENSOANG00000014854)	DUSP7 (ENSOANG00000048154) #22	ACY1 (ENSOANG00000001327)	ABHD14A (ENSOANG00000037506)	ABHD14B (ENSOANG00000037228)	TEX264 (ENSOANG00000040502)	RAD54L2 (ENSOANG00000012793)	DCAF1 (ENSOANG00000012792)	ENSOANG00000001071	MANF (ENSOANG00000012791)	DOCK3 (ENSOANG00000012790)	MAPKAPK3 (ENSOANG00000012789)	MEGF10 (ENSOANG00000012788)	COLGALT1 (ENSOANG00000012787)	ENSOANG00000014606	PGLS (ENSOANG00000050456)	SLC27A1 (ENSOANG00000014609)
Sauria	ANCESTRAL SPECIES	13	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Episquamata	ANCESTRAL SPECIES	4	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a	ENSGT00940000161039
Laterata	ANCESTRAL SPECIES	1	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a	ENSGT00940000161039	ENSGT00940000153920.a.b	ENSGT00940000153920.b
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000008377	ABHD14B (ENSPMRG00000008391)	ABHD14A (ENSPMRG00000008430)	ACY1 (ENSPMRG00000007279)	SEMA3G (ENSPMRG00000007308)	BAP1 (ENSPMRG00000007327)	DNAH1 (ENSPMRG00000007635)	ENSPMRG00000008451	GLYCTK (ENSPMRG00000008461)	WDR82 (ENSPMRG00000008466)	PPM1M (ENSPMRG00000008481)	TWF2 (ENSPMRG00000008508)	ENSPMRG00000008532	ALAS1 (ENSPMRG00000008541) #21	POC1A (ENSPMRG00000008555)	DUSP7 (ENSPMRG00000008572) #22	ENSPMRG00000008575	ENSPMRG00000008588	TNNC1 (ENSPMRG00000008598) ##23	NISCH (ENSPMRG00000008674)	STAB1 (ENSPMRG00000008904)	ENSPMRG00000008920	ENSPMRG00000008970	UQCC5 (ENSPMRG00000009272)	PBRM1 (ENSPMRG00000009441)	GNL3 (ENSPMRG00000011155)	GLT8D1 (ENSPMRG00000011170)	SPCS1 (ENSPMRG00000011177)	NEK4 (ENSPMRG00000011179)	ITIH3 (ENSPMRG00000011271)	ENSPMRG00000011754
Argentine black and white tegu	MODERN SPECIES	8	ABHD14B (ENSSMRG00000009112)	ACY1 (ENSSMRG00000009113)	SEMA3G (ENSSMRG00000009149)	BAP1 (ENSSMRG00000009153)	DNAH1 (ENSSMRG00000009179)	ENSSMRG00000009500	ENSSMRG00000009501	ENSSMRG00000009502	GLYCTK (ENSSMRG00000009535)	WDR82 (ENSSMRG00000009536)	PPM1M (ENSSMRG00000009543)	TWF2 (ENSSMRG00000009544)	ENSSMRG00000009545	ALAS1 (ENSSMRG00000009547) #21	POC1A (ENSSMRG00000009567)	DUSP7 (ENSSMRG00000009571) #22	TNNC1 (ENSSMRG00000009583) ##23	NISCH (ENSSMRG00000009592)	STAB1 (ENSSMRG00000009597)	NT5DC2 (ENSSMRG00000009923)	UQCC5 (ENSSMRG00000009925)	PBRM1 (ENSSMRG00000009948)	GNL3 (ENSSMRG00000014813)	GLT8D1 (ENSSMRG00000014819)	SPCS1 (ENSSMRG00000014820)	NEK4 (ENSSMRG00000014821)	ENSSMRG00000014823	ENSSMRG00000014824	ENSSMRG00000014827	ITIH4 (ENSSMRG00000014831)	MUSTN1 (ENSSMRG00000014833)
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000158855	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a	ENSGT00940000161039
Lizard	MODERN SPECIES	1	ENSACAG00000028580	RRP9 (ENSACAG00000011490)	PARP3 (ENSACAG00000011554)	PCBP4 (ENSACAG00000011701)	ENSACAG00000011698	ABHD14B (ENSACAG00000011916)	ABHD14A (ENSACAG00000011932)	ACY1 (ENSACAG00000011945)	GLYCTK (ENSACAG00000006619)	WDR82 (ENSACAG00000006639)	PPM1M (ENSACAG00000006676)	TWF2 (ENSACAG00000006679)	ENSACAG00000006715	ALAS1 (ENSACAG00000006743) #21	POC1A (ENSACAG00000006781)	DUSP7 (ENSACAG00000006861) #22	ENSACAG00000044449	RPL29 (ENSACAG00000006888)	ENSACAG00000006891	TNNC1 (ENSACAG00000006898) ##23	NISCH (ENSACAG00000006939)	STAB1 (ENSACAG00000006988)	NT5DC2 (ENSACAG00000007080)	ENSACAG00000007122	UQCC5 (ENSACAG00000007129)	PBRM1 (ENSACAG00000007132)	GNL3 (ENSACAG00000007357)	GLT8D1 (ENSACAG00000007417)	SPCS1 (ENSACAG00000007470)	NEK4 (ENSACAG00000007481)	ENSACAG00000007499
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000158855	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388.r	ENSGT00940000154791.c.a	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b.a.b	ENSGT00940000154554.a.hb.b.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000158855	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388.r	ENSGT00940000154791.c.a	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b.a.b.a	ENSGT00940000154554.a.hb.b.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000158855	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388.r	ENSGT00940000154791.c.a	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.hb.b.a.b.a	ENSGT00940000154554.a.hb.b.b	ENSGT00940000154554.a.ib	ENSGT00940000154554.a.hb.a	ENSGT00940000161039
Mainland tiger snake	MODERN SPECIES	198									GLYCTK (ENSNSUG00000011297)	WDR82 (ENSNSUG00000011299)	PPM1M (ENSNSUG00000011335)	TWF2 (ENSNSUG00000011336)	ENSNSUG00000011338	ALAS1 (ENSNSUG00000011340) #21	POC1A (ENSNSUG00000011343)	DUSP7 (ENSNSUG00000011345) #22	ENSNSUG00000011354	TNNC1 (ENSNSUG00000011356) ##23	ENSNSUG00000011359	STAB1 (ENSNSUG00000011366)	NT5DC2 (ENSNSUG00000011388)	UQCC5 (ENSNSUG00000011393)	PBRM1 (ENSNSUG00000011408)	GLT8D1 (ENSNSUG00000013030)	SPCS1 (ENSNSUG00000013041)	NEK4 (ENSNSUG00000013042)	ENSNSUG00000013048
Eastern brown snake	MODERN SPECIES	3	ABHD14B (ENSPTXG00000008099)	ENSPTXG00000008098	ACY1 (ENSPTXG00000008097)	SEMA3G (ENSPTXG00000008096)	BAP1 (ENSPTXG00000008094)	ENSPTXG00000008092	ENSPTXG00000008090	ENSPTXG00000008088	GLYCTK (ENSPTXG00000008084)	WDR82 (ENSPTXG00000008079)	PPM1M (ENSPTXG00000008076)	TWF2 (ENSPTXG00000008073)	ENSPTXG00000008056	ALAS1 (ENSPTXG00000008054) #21	POC1A (ENSPTXG00000008052)	DUSP7 (ENSPTXG00000008051) #22	ENSPTXG00000008049	TNNC1 (ENSPTXG00000008048) ##23	NISCH (ENSPTXG00000006653)	ENSPTXG00000006644	STAB1 (ENSPTXG00000006642)	NT5DC2 (ENSPTXG00000006640)	UQCC5 (ENSPTXG00000006638)	PBRM1 (ENSPTXG00000006633)	GLT8D1 (ENSPTXG00000006629)	SPCS1 (ENSPTXG00000006627)	ENSPTXG00000006625	NEK4 (ENSPTXG00000006620)	ENSPTXG00000000665	ENSPTXG00000000124	ENSPTXG00000000085
Blue-lipped sea krait	MODERN SPECIES	2848																DUSP7 (ENSLLTG00000000486) #22
Indian cobra	MODERN SPECIES	1	ABHD14B (ENSNNAG00000002820)	ABHD14A (ENSNNAG00000002817)	ACY1 (ENSNNAG00000002812)	SEMA3G (ENSNNAG00000002779)	BAP1 (ENSNNAG00000002752)	ENSNNAG00000002714	ENSNNAG00000002689	ENSNNAG00000002681	GLYCTK (ENSNNAG00000002673)	WDR82 (ENSNNAG00000002652)	PPM1M (ENSNNAG00000002620)	TWF2 (ENSNNAG00000002601)	ENSNNAG00000002583	ALAS1 (ENSNNAG00000002570) #21	POC1A (ENSNNAG00000002560)	DUSP7 (ENSNNAG00000002549) #22	ENSNNAG00000002540	TNNC1 (ENSNNAG00000002527) ##23	NISCH (ENSNNAG00000002074)	ENSNNAG00000001979	NT5DC2 (ENSNNAG00000001802)	UQCC5 (ENSNNAG00000001745)	ENSNNAG00000001704	GNL3 (ENSNNAG00000001649)	GLT8D1 (ENSNNAG00000001634)	SPCS1 (ENSNNAG00000001626)	NEK4 (ENSNNAG00000001606)	ENSNNAG00000001510	ENSNNAG00000001336	ENSNNAG00000001124	ENSNNAG00000000907
tuatara	MODERN SPECIES	1518															POC1A (ENSSPUG00000008656)	DUSP7 (ENSSPUG00000008645) #22
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Archosauria	ANCESTRAL SPECIES	40	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00390000011904.p	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Aves	ANCESTRAL SPECIES	40	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00390000011904.p	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Neognathae	ANCESTRAL SPECIES	35	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00390000011904.p	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00940000158855	ENSGT00950000182998.C.b	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.b	ENSGT00940000157363
Golden eagle	MODERN SPECIES	12	ACY1 (ENSACCG00020011390)	SEMA3G (ENSACCG00020011370)	BAP1 (ENSACCG00020011337)	ENSACCG00020011309	ENSACCG00020011284	ENSACCG00020011275	ENSACCG00020011261	ENSACCG00020011248	GLYCTK (ENSACCG00020011235)	WDR82 (ENSACCG00020011225)	PPM1M (ENSACCG00020011212)	TWF2 (ENSACCG00020011198)	ALAS1 (ENSACCG00020011182) #21	ENSACCG00020011173	POC1A (ENSACCG00020011157)	DUSP7 (ENSACCG00020011149) #22	ENSACCG00020011141	ENSACCG00020011135	TNNC1 (ENSACCG00020011128) ##23	NISCH (ENSACCG00020011112)	STAB1 (ENSACCG00020011039)	NT5DC2 (ENSACCG00020010913)	UQCC5 (ENSACCG00020010895)	PBRM1 (ENSACCG00020010759)	GNL3 (ENSACCG00020014755)	GLT8D1 (ENSACCG00020014737)	SPCS1 (ENSACCG00020014729)	NEK4 (ENSACCG00020014711)	ITIH3 (ENSACCG00020014659)	ITIH4 (ENSACCG00020014580)	STIMATE (ENSACCG00020014533)
Kakapo	MODERN SPECIES	3	ABHD14B (ENSSHBG00005007070)	ABHD14A (ENSSHBG00005007058)	ACY1 (ENSSHBG00005007042)	SEMA3G (ENSSHBG00005006761)	BAP1 (ENSSHBG00005005410)	ENSSHBG00005020974	ENSSHBG00005020968	ENSSHBG00005020964	ENSSHBG00005020960	GLYCTK (ENSSHBG00005020952)	WDR82 (ENSSHBG00005020939)	PPM1M (ENSSHBG00005020935)	TWF2 (ENSSHBG00005020925)	ALAS1 (ENSSHBG00005020913) #21	POC1A (ENSSHBG00005020907)	DUSP7 (ENSSHBG00005020900) #22	RPL29 (ENSSHBG00005020895)	TNNC1 (ENSSHBG00005020887) ##23	NISCH (ENSSHBG00005020879)	STAB1 (ENSSHBG00005020858)	NT5DC2 (ENSSHBG00005020840)	UQCC5 (ENSSHBG00005020832)	PBRM1 (ENSSHBG00005020759)	GNL3 (ENSSHBG00005020734)	GLT8D1 (ENSSHBG00005020730)	SPCS1 (ENSSHBG00005020727)	NEK4 (ENSSHBG00005020725)	ITIH3 (ENSSHBG00005020712)	ITIH4 (ENSSHBG00005020685)	STIMATE (ENSSHBG00005020677)	SFMBT1 (ENSSHBG00005020664)
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157452.t	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Great tit	MODERN SPECIES	3	ENSPMJG00000012538	ABHD14B (ENSPMJG00000012537)	ABHD14A (ENSPMJG00000012536)	ACY1 (ENSPMJG00000012535)	SEMA3G (ENSPMJG00000012534)	BAP1 (ENSPMJG00000012533)	ENSPMJG00000012532	DNAH1 (ENSPMJG00000009880)	GLYCTK (ENSPMJG00000009862)	WDR82 (ENSPMJG00000009855)	PPM1M (ENSPMJG00000009845)	TWF2 (ENSPMJG00000009835)	ALAS1 (ENSPMJG00000009834) #21	ENSPMJG00000009833	POC1A (ENSPMJG00000009832)	DUSP7 (ENSPMJG00000009829) #22	ENSPMJG00000009755	TNNC1 (ENSPMJG00000009753) ##23	NISCH (ENSPMJG00000009591)	STAB1 (ENSPMJG00000009304)	NT5DC2 (ENSPMJG00000009068)	UQCC5 (ENSPMJG00000009065)	PBRM1 (ENSPMJG00000005413)	GNL3 (ENSPMJG00000005401)	GLT8D1 (ENSPMJG00000005400)	SPCS1 (ENSPMJG00000005399)	NEK4 (ENSPMJG00000005398)	ITIH3 (ENSPMJG00000005395)	ITIH4 (ENSPMJG00000005390)	MUSTN1 (ENSPMJG00000005389)	STIMATE (ENSPMJG00000005386)
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157452.t	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Flycatcher	MODERN SPECIES	3	PARP3 (ENSFALG00000008829)	ENSFALG00000023354	PCBP4 (ENSFALG00000008831)	ABHD14A (ENSFALG00000008838)	ACY1 (ENSFALG00000008839)	SEMA3G (ENSFALG00000008851)	BAP1 (ENSFALG00000008877)	ENSFALG00000008890	DNAH1 (ENSFALG00000008880)	GLYCTK (ENSFALG00000028948)	WDR82 (ENSFALG00000008902)	PPM1M (ENSFALG00000008914)	TWF2 (ENSFALG00000026344)	ALAS1 (ENSFALG00000008917) #21	POC1A (ENSFALG00000008922)	DUSP7 (ENSFALG00000008924) #22	RPL29 (ENSFALG00000027543)	TNNC1 (ENSFALG00000025343) ##23	NISCH (ENSFALG00000008935)	STAB1 (ENSFALG00000008941)	NT5DC2 (ENSFALG00000008946)	UQCC5 (ENSFALG00000008950)	PBRM1 (ENSFALG00000008954)	GNL3 (ENSFALG00000025760)	GLT8D1 (ENSFALG00000008966)	SPCS1 (ENSFALG00000008968)	NEK4 (ENSFALG00000008969)	ITIH3 (ENSFALG00000008971)	ITIH4 (ENSFALG00000003532)	MUSTN1 (ENSFALG00000028870)	STIMATE (ENSFALG00000026699)
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157452.t	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00950000185875	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00940000159711	ENSGT00940000159388	ENSGT00940000161296	ENSGT00940000155631	ENSGT00940000157677	ENSGT00940000156388	ENSGT00940000154791	ENSGT00390000011904.p	ENSGT00390000014365	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157452.t	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b	ENSGT00940000153920.b
Common canary	MODERN SPECIES	92					ACY1 (ENSSCAG00000017065)	SEMA3G (ENSSCAG00000017069)	BAP1 (ENSSCAG00000017075)	DNAH1 (ENSSCAG00000017085)	ENSSCAG00000017095	GLYCTK (ENSSCAG00000017099)	WDR82 (ENSSCAG00000017104)	PPM1M (ENSSCAG00000017115)	TWF2 (ENSSCAG00000017132)	ALAS1 (ENSSCAG00000017135) #21	POC1A (ENSSCAG00000017139)	DUSP7 (ENSSCAG00000017141) #22	TEX264 (ENSSCAG00000017144)	GRM2 (ENSSCAG00000017148)	RRP9 (ENSSCAG00000017151)	HYAL3 (ENSSCAG00000017156)	IFRD2 (ENSSCAG00000017160)	SEMA3B (ENSSCAG00000017173)	OASL (ENSSCAG00000017183)	SLC38A3 (ENSSCAG00000017187)	GNAI2 (ENSSCAG00000017191)	ENSSCAG00000017194	GNAT1 (ENSSCAG00000017195)	SEMA3F (ENSSCAG00000017198)	RBM5 (ENSSCAG00000017205)	PARP3 (ENSSCAG00000017211)	ENSSCAG00000017214
Zebra finch	MODERN SPECIES	3	PCBP4 (ENSTGUG00000006393)	ABHD14B (ENSTGUG00000006384)	ABHD14A (ENSTGUG00000006376)	ACY1 (ENSTGUG00000006344)	SEMA3G (ENSTGUG00000006291)	BAP1 (ENSTGUG00000006264)	DNAH1 (ENSTGUG00000006140)	ENSTGUG00000006261	GLYCTK (ENSTGUG00000006130)	WDR82 (ENSTGUG00000023769)	PPM1M (ENSTGUG00000006115)	TWF2 (ENSTGUG00000006095)	ALAS1 (ENSTGUG00000006069) #21	ENSTGUG00000006065	POC1A (ENSTGUG00000006036)	DUSP7 (ENSTGUG00000006028) #22	TNNC1 (ENSTGUG00000006008) ##23	STAB1 (ENSTGUG00000005918)	NT5DC2 (ENSTGUG00000005893)	PBRM1 (ENSTGUG00000005797)	GNL3 (ENSTGUG00000005774)	GLT8D1 (ENSTGUG00000005754)	SPCS1 (ENSTGUG00000005751)	NEK4 (ENSTGUG00000005727)	ITIH3 (ENSTGUG00000005650)	ITIH4 (ENSTGUG00000005546)	MUSTN1 (ENSTGUG00000005545)	STIMATE (ENSTGUG00000025639)	SFMBT1 (ENSTGUG00000005471)	ENSTGUG00000022033	ENSTGUG00000004531
Medium ground finch	MODERN SPECIES	42	ABHD14A (ENSGFOG00000000353)	ACY1 (ENSGFOG00000000334)	SEMA3G (ENSGFOG00000000318)	BAP1 (ENSGFOG00000000306)	ENSGFOG00000000295	ENSGFOG00000012018	ENSGFOG00000012015	ENSGFOG00000012010	GLYCTK (ENSGFOG00000012005)	WDR82 (ENSGFOG00000012000)	PPM1M (ENSGFOG00000011995)	TWF2 (ENSGFOG00000011987)	ALAS1 (ENSGFOG00000011978) #21	ENSGFOG00000011975	POC1A (ENSGFOG00000011969)	DUSP7 (ENSGFOG00000011960) #22	TNNC1 (ENSGFOG00000011955) ##23	NISCH (ENSGFOG00000011934)	STAB1 (ENSGFOG00000011766)	NT5DC2 (ENSGFOG00000011705)	UQCC5 (ENSGFOG00000011693)	PBRM1 (ENSGFOG00000011680)	ENSGFOG00000011672	ENSGFOG00000011663	GLT8D1 (ENSGFOG00000011659)	SPCS1 (ENSGFOG00000011656)	ENSGFOG00000011646	NEK4 (ENSGFOG00000011642)	ITIH3 (ENSGFOG00000011635)	ITIH4 (ENSGFOG00000011541)	MUSTN1 (ENSGFOG00000011525)
Galloanserae	ANCESTRAL SPECIES	41															ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000153920.a.b	ENSGT00940000153920.b
Anatidae	ANCESTRAL SPECIES	68															ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.gb.a.a	ENSGT00940000161039	ENSGT00940000153920.a.b	ENSGT00940000153920.b
Pink-footed goose	MODERN SPECIES	252														POC1A (ENSABRG00000020094)	ENSABRG00000020088	DUSP7 (ENSABRG00000020087) #22	ENSABRG00000020076	TNNC1 (ENSABRG00000020073) ##23	NISCH (ENSABRG00000020062)	STAB1 (ENSABRG00000019942)	NT5DC2 (ENSABRG00000019855)	UQCC5 (ENSABRG00000019847)	PBRM1 (ENSABRG00000018589)	GNL3 (ENSABRG00000018349)	GLT8D1 (ENSABRG00000018312)	SPCS1 (ENSABRG00000018308)	NEK4 (ENSABRG00000018305)	ITIH3 (ENSABRG00000017764)	ITIH4 (ENSABRG00000017653)	MUSTN1 (ENSABRG00000017645)	STIMATE (ENSABRG00000017641)
Duck	MODERN SPECIES	4	ENSAPLG00000019124	DAG1 (ENSAPLG00000023906)	ENSAPLG00000026128	IP6K1 (ENSAPLG00000008308)	ENSAPLG00000022689	RNF123 (ENSAPLG00000007425)	AMIGO3 (ENSAPLG00000020461)	ENSAPLG00000002149	ENSAPLG00000024735	ENSAPLG00000024855	EMC3 (ENSAPLG00000001148)	USP4 (ENSAPLG00000014796)	GPX1 (ENSAPLG00000001202)	RHOA (ENSAPLG00000014687)	POC1A (ENSAPLG00000007756)	DUSP7 (ENSAPLG00000008525) #22	RPL29 (ENSAPLG00000017190)	TNNC1 (ENSAPLG00000008432) ##23	NISCH (ENSAPLG00000007897)	STAB1 (ENSAPLG00000006699)	NT5DC2 (ENSAPLG00000006247)	UQCC5 (ENSAPLG00000027619)	PBRM1 (ENSAPLG00000005420)	GNL3 (ENSAPLG00000005171)	GLT8D1 (ENSAPLG00000004984)	SPCS1 (ENSAPLG00000004976)	NEK4 (ENSAPLG00000004795)	ENSAPLG00000026057	ENSAPLG00000004256	ITIH4 (ENSAPLG00000004101)	MUSTN1 (ENSAPLG00000024683)
Phasianidae	ANCESTRAL SPECIES	16														ENSGT00940000158328	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000153920.a.b	ENSGT00940000153920.b	ENSGT00940000157363
Japanese quail	MODERN SPECIES	3														RRP9 (ENSCJPG00005004106)	POC1A (ENSCJPG00005004107)	DUSP7 (ENSCJPG00005004110) #22	RPL29 (ENSCJPG00005004112)	TNNC1 (ENSCJPG00005004113) ##23	NISCH (ENSCJPG00005004117)	STAB1 (ENSCJPG00005004119)	NT5DC2 (ENSCJPG00005004125)	UQCC5 (ENSCJPG00005004130)	PBRM1 (ENSCJPG00005004132)	GNL3 (ENSCJPG00005004137)	GLT8D1 (ENSCJPG00005004143)	SPCS1 (ENSCJPG00005004144)	NEK4 (ENSCJPG00005004145)	ITIH3 (ENSCJPG00005004146)	MUSTN1 (ENSCJPG00005004147)	STIMATE (ENSCJPG00005004148)	SFMBT1 (ENSCJPG00005004150)
Phasianidae_b	ANCESTRAL SPECIES	16														ENSGT00940000158328	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000153920.a.b	ENSGT00940000153920.b	ENSGT00940000157363
Chicken	MODERN SPECIES	3									ENSGALG00010027990	ENSGALG00010027991	ENSGALG00010027992	ENSGALG00010027997	ENSGALG00010028003	RRP9 (ENSGALG00010028009)	POC1A (ENSGALG00010028011)	DUSP7 (ENSGALG00010028015) #22	ENSGALG00010028018	RPL29 (ENSGALG00010028019)	TNNC1 (ENSGALG00010028025) ##23	NISCH (ENSGALG00010028031)	STAB1 (ENSGALG00010028039)	NT5DC2 (ENSGALG00010028043)	SMIM4 (ENSGALG00010028046)	PBRM1 (ENSGALG00010028050)	GNL3 (ENSGALG00010028051)	GLT8D1 (ENSGALG00010028058)	SPCS1 (ENSGALG00010028064)	NEK4 (ENSGALG00010028069)	ITIH3 (ENSGALG00010028079)	MUSTN1 (ENSGALG00010028080)	STIMATE (ENSGALG00010028087)
Turkey	MODERN SPECIES	5	ENSMGAG00000001882	ENSMGAG00000018766	MANF (ENSMGAG00000002219)	ENSMGAG00000002240	ENSMGAG00000017686	ENSMGAG00000018569	ENSMGAG00000016749	ENSMGAG00000001797	ENSMGAG00000021883	ENSMGAG00000002261	ENSMGAG00000001655	ENSMGAG00000001685	ENSMGAG00000016382	ENSMGAG00000001673	POC1A (ENSMGAG00000001628)	ENSMGAG00000001220 #22	RPL29 (ENSMGAG00000019514)	TNNC1 (ENSMGAG00000001184) ##23	NISCH (ENSMGAG00000001150)	STAB1 (ENSMGAG00000000964)	NT5DC2 (ENSMGAG00000000916)	UQCC5 (ENSMGAG00000000961)	PBRM1 (ENSMGAG00000000883)	GNL3 (ENSMGAG00000000848)	GLT8D1 (ENSMGAG00000000834)	SPCS1 (ENSMGAG00000000828)	NEK4 (ENSMGAG00000001127)	ITIH3 (ENSMGAG00000001118)	MUSTN1 (ENSMGAG00000000956)	STIMATE (ENSMGAG00000000938)	SFMBT1 (ENSMGAG00000000785)
African ostrich	MODERN SPECIES	352							BAP1 (ENSSCUG00000003900)	DNAH1 (ENSSCUG00000003972)	ENSSCUG00000004062	GLYCTK (ENSSCUG00000004063)	WDR82 (ENSSCUG00000004068)	PPM1M (ENSSCUG00000004071)	TWF2 (ENSSCUG00000004072)	ALAS1 (ENSSCUG00000004073) #21	POC1A (ENSSCUG00000004074)	DUSP7 (ENSSCUG00000004079) #22	RPL29 (ENSSCUG00000004083)	TNNC1 (ENSSCUG00000004084) ##23	NISCH (ENSSCUG00000004089)	STAB1 (ENSSCUG00000004094)	NT5DC2 (ENSSCUG00000004106)	UQCC5 (ENSSCUG00000004113)
Cryptodira	ANCESTRAL SPECIES	41	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561.h	ENSGT00940000160561.g	ENSGT00390000007160.a.a	ENSGT00940000155514	ENSGT00940000154089.a	ENSGT00940000157392	ENSGT00390000014125	ENSGT00410000025882.a	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000154554.a.gb.b	ENSGT00940000153920.a.b
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561.h	ENSGT00940000160561.g	ENSGT00390000007160.a.a	ENSGT00940000155514	ENSGT00940000154089.a	ENSGT00940000157392	ENSGT00390000014125	ENSGT00410000025882.a	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321.g	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000154554.a.gb.b	ENSGT00940000153920.a.b
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561.g	ENSGT00940000160561.h	ENSGT00390000007160.a.a	ENSGT00940000155514	ENSGT00940000154089.a	ENSGT00940000157392	ENSGT00390000014125	ENSGT00410000025882.a	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321.g	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000154554.a.gb.b	ENSGT00940000153920.a.b
Three-toed box turtle	MODERN SPECIES	107	DCAF1 (ENSTMTG00000020610)	ENSTMTG00000020603	ENSTMTG00000020596	MANF (ENSTMTG00000020592)	DOCK3 (ENSTMTG00000020550)	MAPKAPK3 (ENSTMTG00000020500)	CISH (ENSTMTG00000020487)	HEMK1 (ENSTMTG00000020452)	C3orf18 (ENSTMTG00000020428)	WDR82 (ENSTMTG00000020414)	PPM1M (ENSTMTG00000020402)	TWF2 (ENSTMTG00000020398)	ENSTMTG00000020391	ALAS1 (ENSTMTG00000020380) #21	POC1A (ENSTMTG00000020372)	DUSP7 (ENSTMTG00000020363) #22	ENSTMTG00000020357	TNNC1 (ENSTMTG00000020348) ##23	NISCH (ENSTMTG00000019330)	NT5DC2 (ENSTMTG00000018620)	ENSTMTG00000018572	PBRM1 (ENSTMTG00000018368)	GNL3 (ENSTMTG00000018301)	GLT8D1 (ENSTMTG00000018281)	ENSTMTG00000018268	NEK4 (ENSTMTG00000018198)	ENSTMTG00000018064	ITIH4 (ENSTMTG00000017860)	ENSTMTG00000017615	MUSTN1 (ENSTMTG00000017576)	STIMATE (ENSTMTG00000017551)
painted turtle	MODERN SPECIES	789	RAD54L2 (ENSCPBG00000016624)	DCAF1 (ENSCPBG00000016641)	ENSCPBG00000016656	ENSCPBG00000016658	MANF (ENSCPBG00000016660)	DOCK3 (ENSCPBG00000016664)	MAPKAPK3 (ENSCPBG00000016694)	CISH (ENSCPBG00000016696)	C3orf18 (ENSCPBG00000016703)	WDR82 (ENSCPBG00000016710)	PPM1M (ENSCPBG00000016715)	TWF2 (ENSCPBG00000016717)	ENSCPBG00000016720	ENSCPBG00000016724 #21	POC1A (ENSCPBG00000016728)	DUSP7 (ENSCPBG00000016732) #22
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000155763	ENSGT00390000005874	ENSGT00940000160561.h	ENSGT00940000160561.g	ENSGT00390000007160.a.a	ENSGT00940000155514	ENSGT00940000154089.a	ENSGT00940000157392	ENSGT00390000014125	ENSGT00410000025882.a	ENSGT00530000063965	ENSGT00940000161084	ENSGT00530000063868.a	ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084	ENSGT00940000153541.B ##23	ENSGT00940000156494	ENSGT00940000157928	ENSGT00940000159940	ENSGT00390000013390	ENSGT00390000003017.c.a	ENSGT00940000158320	ENSGT00940000159273	ENSGT00390000018321.g.a	ENSGT00940000157448	ENSGT00940000154554.a.gb.a	ENSGT00940000161039	ENSGT00940000154554.a.gb.b	ENSGT00940000153920.a.b
Abingdon island giant tortoise	MODERN SPECIES	2335	ENSCABG00000014368	ENSCABG00000014365	MANF (ENSCABG00000014362)	ENSCABG00000014358	DOCK3 (ENSCABG00000014345)	MAPKAPK3 (ENSCABG00000014229)	CISH (ENSCABG00000014228)	HEMK1 (ENSCABG00000014226)	C3orf18 (ENSCABG00000014225)	WDR82 (ENSCABG00000014222)	PPM1M (ENSCABG00000014221)	TWF2 (ENSCABG00000014219)	ENSCABG00000014217	ALAS1 (ENSCABG00000014214) #21	POC1A (ENSCABG00000014213)	DUSP7 (ENSCABG00000014211) #22	RPL29 (ENSCABG00000014209)	TNNC1 (ENSCABG00000014207) ##23	NISCH (ENSCABG00000014206)	STAB1 (ENSCABG00000014123)	NT5DC2 (ENSCABG00000014110)	UQCC5 (ENSCABG00000014109)	PBRM1 (ENSCABG00000011575)	ENSCABG00000011554	GNL3 (ENSCABG00000011547)	GLT8D1 (ENSCABG00000011546)	ENSCABG00000011543	NEK4 (ENSCABG00000011540)	ENSCABG00000011505	ITIH4 (ENSCABG00000011500)	ENSCABG00000011494
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005009004	MANF (ENSGEVG00005009035)	DOCK3 (ENSGEVG00005009087)	ENSGEVG00005009456	MAPKAPK3 (ENSGEVG00005009651)	CISH (ENSGEVG00005010534)	ENSGEVG00005010553	HEMK1 (ENSGEVG00005010573)	C3orf18 (ENSGEVG00005010617)	WDR82 (ENSGEVG00005010674)	PPM1M (ENSGEVG00005010710)	TWF2 (ENSGEVG00005010731)	ENSGEVG00005010753	ALAS1 (ENSGEVG00005010806) #21	POC1A (ENSGEVG00005010905)	DUSP7 (ENSGEVG00005011303) #22	ENSGEVG00005011325	TNNC1 (ENSGEVG00005011344) ##23	NISCH (ENSGEVG00005011405)	STAB1 (ENSGEVG00005011544)	NT5DC2 (ENSGEVG00005012336)	ENSGEVG00005012368	PBRM1 (ENSGEVG00005012413)	ENSGEVG00005012656	GNL3 (ENSGEVG00005012682)	GLT8D1 (ENSGEVG00005012743)	ENSGEVG00005012769	NEK4 (ENSGEVG00005012801)	ENSGEVG00005012857	ITIH4 (ENSGEVG00005013213)	ENSGEVG00005013352
Chinese turtle	MODERN SPECIES	1386						ENSPSIG00000016285	MAPKAPK3 (ENSPSIG00000016102)	CISH (ENSPSIG00000016088)	HEMK1 (ENSPSIG00000016072)	C3orf18 (ENSPSIG00000016012)	PPM1M (ENSPSIG00000015909)	WDR82 (ENSPSIG00000015458)	ENSPSIG00000015451	ALAS1 (ENSPSIG00000015154) #21	POC1A (ENSPSIG00000014809)	DUSP7 (ENSPSIG00000014747) #22	RPL29 (ENSPSIG00000014699)	TNNC1 (ENSPSIG00000014627) ##23	NISCH (ENSPSIG00000014534)	ENSPSIG00000014476	ENSPSIG00000013000	NT5DC2 (ENSPSIG00000012264)	UQCC5 (ENSPSIG00000012245)	PBRM1 (ENSPSIG00000011502)	GNL3 (ENSPSIG00000011486)	GLT8D1 (ENSPSIG00000011156)	SPCS1 (ENSPSIG00000011137)	NEK4 (ENSPSIG00000011009)	ENSPSIG00000008164	ITIH4 (ENSPSIG00000006896)	ENSPSIG00000017905
Anura	ANCESTRAL SPECIES	390														ENSGT00940000156030 #21	ENSGT00940000157494	ENSGT00940000157262 #22	ENSGT00390000007084
Frog	MODERN SPECIES	4	lrrn1 (ENSXETG00000005147)	crbn (ENSXETG00000005146)	trnt1 (ENSXETG00000025091)	il5ra (ENSXETG00000032117)	cntn4 (ENSXETG00000031338)	ENSXETG00000042663	ENSXETG00000045593	ENSXETG00000048206	ENSXETG00000025093	tnnc1 (ENSXETG00000010816) #23	pick1 (ENSXETG00000010815)	brk1 (ENSXETG00000027883)	borcs6 (ENSXETG00000037917)	alas1 (ENSXETG00000010814) #21	poc1a (ENSXETG00000010813)	dusp7 (ENSXETG00000039476) #22	rpl29 (ENSXETG00000010811)	fbln2 (ENSXETG00000010810) #33	itih4 (ENSXETG00000036712)	ENSXETG00000044737	ENSXETG00000032675	ENSXETG00000037753	pde6h (ENSXETG00000043410)	arhgdib (ENSXETG00000002772)	erp27 (ENSXETG00000032403)	mgp (ENSXETG00000048657)	ENSXETG00000048183	wbp11 (ENSXETG00000002770)	ptx (ENSXETG00000002769)	crp (ENSXETG00000025212)	crp.3 (ENSXETG00000025211)
Leishan spiny toad	MODERN SPECIES	11	MGP (ENSLLEG00000029129)	ERP27 (ENSLLEG00000029147)	ARHGDIB (ENSLLEG00000029167)	PDE6H (ENSLLEG00000029192)	ENSLLEG00000029228	ENSLLEG00000029234	ENSLLEG00000029249	ENSLLEG00000029268	ENSLLEG00000029278	ENSLLEG00000029313	ENSLLEG00000029345	FBLN2 (ENSLLEG00000029386) #33	ENSLLEG00000029417	ALAS1 (ENSLLEG00000029451) #21	POC1A (ENSLLEG00000029518)	ENSLLEG00000029572 #22	ENSLLEG00000029582	ENSLLEG00000029655 #23	ENSLLEG00000029737	ENSLLEG00000029755	ENSLLEG00000029766	ENSLLEG00000029776	ENSLLEG00000029788	CNTN4 (ENSLLEG00000029791)	ENSLLEG00000029830	TRNT1 (ENSLLEG00000029877)	CRBN (ENSLLEG00000030072)	LRRN1 (ENSLLEG00000030088)	ENSLLEG00000030102	SUMF1 (ENSLLEG00000014064)	ITPR1 (ENSLLEG00000014236)
Coelacanth	MODERN SPECIES	230	SLC6A11 (ENSLACG00000018991)	ENSLACG00000018965	IARS1 (ENSLACG00000018913)	ENSLACG00000018911	NOL8 (ENSLACG00000018898)	OGN (ENSLACG00000018887)	OMD (ENSLACG00000018880)	ASPN (ENSLACG00000018869)	ECM2 (ENSLACG00000018857)	IPPK (ENSLACG00000018837)	si:dkey-42i9.4 (ENSLACG00000018830)	ATRIP (ENSLACG00000018824)	SHISA5 (ENSLACG00000018821)	ALAS1 (ENSLACG00000018803) #21	POC1A (ENSLACG00000018788)	DUSP7 (ENSLACG00000018752) #22	rpl29 (ENSLACG00000018622)	tnnc1a (ENSLACG00000018616) ##23	NISCH (ENSLACG00000018599)	ENSLACG00000018550	NT5DC2 (ENSLACG00000018520)	PPM1M (ENSLACG00000018487)	WDR82 (ENSLACG00000018445)	ENSLACG00000018426	tlr9 (ENSLACG00000018420)	EMC3 (ENSLACG00000018410)	BAP1 (ENSLACG00000018395)	GLYCTK (ENSLACG00000018387)	ENSLACG00000018160	DNAH1 (ENSLACG00000018145)	FANCD2 (ENSLACG00000018105)