Rodentia	ANCESTRAL SPECIES	10	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00910000146917	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b #30	ENSGT01050000244815.B.a.a	ENSGT00390000000062.x.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00910000146917	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35
Kangaroo rat	MODERN SPECIES	526	Arhgap4 (ENSDORG00000002750) #7	Naa10 (ENSDORG00000002753) #8	Renbp (ENSDORG00000002755) #9	Hcfc1 (ENSDORG00000002756) #10	Irak1 (ENSDORG00000013876) #11	Mecp2 (ENSDORG00000014978) #12	Opn1mw (ENSDORG00000026454) #13	Tex28 (ENSDORG00000010136) #14	Tktl1 (ENSDORG00000013785) #15	Emd (ENSDORG00000004375) #16	Flna (ENSDORG00000004370) #17	ENSDORG00000004369 #18	Tafazzin (ENSDORG00000029677) #19	Atp6ap1 (ENSDORG00000008847) #20	Gdi1 (ENSDORG00000008848) #21	Fam50a (ENSDORG00000008851) #22	Plxna3 (ENSDORG00000000853) #23	Lage3 (ENSDORG00000029875) #24	Ubl4a (ENSDORG00000005196) #25	Slc10a3 (ENSDORG00000005197) #26	Fam3a (ENSDORG00000025173) #27	ENSDORG00000012731 #28	Ikbkg (ENSDORG00000028140) #29	ENSDORG00000000625 #30	Gab3 (ENSDORG00000006809) #31	ENSDORG00000013566 #32	Mpp1 (ENSDORG00000013568) #33	ENSDORG00000024019 #34	F8 (ENSDORG00000013155) #35	ENSDORG00000028874 #36	Fundc2 (ENSDORG00000013156) #37
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00910000146917	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35
Lesser Egyptian jerboa	MODERN SPECIES	224	Naa10 (ENSJJAG00000023398) #8	Renbp (ENSJJAG00000010739) #9	Hcfc1 (ENSJJAG00000012815) #10	Irak1 (ENSJJAG00000013849) #11	Mecp2 (ENSJJAG00000022463) #12	ENSJJAG00000022596	Opn1mw (ENSJJAG00000022699) #13	Tex28 (ENSJJAG00000019769) #14	Tktl1 (ENSJJAG00000010328) #15	Flna (ENSJJAG00000015450) #17	Emd (ENSJJAG00000019656) #16	ENSJJAG00000014235 ##18	Tafazzin (ENSJJAG00000015233) #19	ENSJJAG00000019557 #20	Gdi1 (ENSJJAG00000008815) #21	Fam50a (ENSJJAG00000010389) #22	Plxna3 (ENSJJAG00000020257) #23	Lage3 (ENSJJAG00000022478) #24	ENSJJAG00000022788 #25	Slc10a3 (ENSJJAG00000022929) #26	Fam3a (ENSJJAG00000023156) #27	ENSJJAG00000023806 #28	Ikbkg (ENSJJAG00000023964) #29
Muroidea	ANCESTRAL SPECIES	13	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00910000146917	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	660	Arhgap4 (ENSNGAG00000015413) #7	Naa10 (ENSNGAG00000020303) #8	Renbp (ENSNGAG00000021686) #9	Hcfc1 (ENSNGAG00000013083) #10	Irak1 (ENSNGAG00000011647) #11	Mecp2 (ENSNGAG00000009171) #12	Opn1mw (ENSNGAG00000011604) #13	Tex28 (ENSNGAG00000023701) #14	Flna (ENSNGAG00000013524) #17	Emd (ENSNGAG00000018770) #16	ENSNGAG00000023746 #18	Dnase1l1 (ENSNGAG00000024155)	Tafazzin (ENSNGAG00000008680) #19	Atp6ap1 (ENSNGAG00000021512) #20	Gdi1 (ENSNGAG00000023333) #21	Fam50a (ENSNGAG00000021495) #22	ENSNGAG00000012608	Plxna3 (ENSNGAG00000022548) #23	Lage3 (ENSNGAG00000023293) #24	Ubl4a (ENSNGAG00000023782) #25	Slc10a3 (ENSNGAG00000007975) #26	Fam3a (ENSNGAG00000016683) #27	ENSNGAG00000020668 #28	Ikbkg (ENSNGAG00000019535) #29	ENSNGAG00000024034 #30	Or13ae2 (ENSNGAG00000001537)
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00910000146917	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00910000146917	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35
Cricetinae	ANCESTRAL SPECIES	46	ENSGT01050000244882.b.c.b	ENSGT00950000182824.a.b.b #7	ENSGT00550000074803 #8	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b.q.a #30	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35	ENSGT00940000154783.f.db.b #37
Chinese hamster chok1gshd	MODERN SPECIES	16	Naa10 (ENSCGRG00001012595) #8	Hcfc1 (ENSCGRG00001019535) #10	Irak1 (ENSCGRG00001013928) #11	ENSCGRG00001022957	Mecp2 (ENSCGRG00001017650) #12	Opn1mw (ENSCGRG00001024157) #13	Tex28 (ENSCGRG00001014288) #14	ENSCGRG00001010950	Flna (ENSCGRG00001013154) #17	Emd (ENSCGRG00001023962) #16	ENSCGRG00001008387 #18	DNASE1L1 (ENSCGRG00001019882)	TAZ (ENSCGRG00001016189) #19	Atp6ap1 (ENSCGRG00001015351) #20	Gdi1 (ENSCGRG00001020747) #21	Fam50a (ENSCGRG00001022147) #22	Plxna3 (ENSCGRG00001018950) #23	Lage3 (ENSCGRG00001006943) #24	Ubl4a (ENSCGRG00001024649) #25	Fam3a (ENSCGRG00001017590) #27	G6PDH (ENSCGRG00001009805) #28	Ikbkg (ENSCGRG00001023852) #29	Or7r1 (ENSCGRG00001002331)	ENSCGRG00001018213	ENSCGRG00001000852 #30	Gab3 (ENSCGRG00001024780) #31	ENSCGRG00001014574 #32	Mpp1 (ENSCGRG00001000334) #33	Smim9 (ENSCGRG00001020847)	F8 (ENSCGRG00001018172) #35	Fundc2 (ENSCGRG00001005074) #37
Golden Hamster	MODERN SPECIES	857	L1cam (ENSMAUG00000008575)	Avpr2 (ENSMAUG00000001098)	Arhgap4 (ENSMAUG00000020011) #7	Naa10 (ENSMAUG00000019021) #8	Hcfc1 (ENSMAUG00000018495) #10	Irak1 (ENSMAUG00000002430) #11	Mecp2 (ENSMAUG00000018195) #12	Opn1mw (ENSMAUG00000017549) #13	Tex28 (ENSMAUG00000011775) #14	Emd (ENSMAUG00000016655) #16	ENSMAUG00000013615 #18	Dnase1l1 (ENSMAUG00000005714)	Tafazzin (ENSMAUG00000001836) #19	Atp6ap1 (ENSMAUG00000014514) #20	Gdi1 (ENSMAUG00000001476) #21	Fam50a (ENSMAUG00000020359) #22	Plxna3 (ENSMAUG00000019645) #23	Lage3 (ENSMAUG00000021750) #24	Ubl4a (ENSMAUG00000019612) #25	Slc10a3 (ENSMAUG00000005496) #26	Fam3a (ENSMAUG00000009961) #27	ENSMAUG00000008547 #28	Ikbkg (ENSMAUG00000008491) #29
Cricetidae_B	ANCESTRAL SPECIES	28	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00910000146917	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01100000263574.b.j	ENSGT01050000244815.B.a.a	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35
Prairie vole	MODERN SPECIES	168							ENSMOCG00000017630 #13	Tex28 (ENSMOCG00000011491) #14	Flna (ENSMOCG00000007826) #17	Emd (ENSMOCG00000003977) #16	ENSMOCG00000013831 #18	Dnase1l1 (ENSMOCG00000017402)	Tafazzin (ENSMOCG00000010108) #19	Atp6ap1 (ENSMOCG00000001026) #20	Gdi1 (ENSMOCG00000006575) #21	Fam50a (ENSMOCG00000015890) #22	Plxna3 (ENSMOCG00000002375) #23	ENSMOCG00000002473 #24	Ubl4a (ENSMOCG00000000785) #25	Slc10a3 (ENSMOCG00000008789) #26	Fam3a (ENSMOCG00000016025) #27	ENSMOCG00000015421 #28	Ikbkg (ENSMOCG00000011244) #29	ENSMOCG00000017711 #30	Or7r1 (ENSMOCG00000002349)	Gab3 (ENSMOCG00000015626) #31	ENSMOCG00000001169 #32	Mpp1 (ENSMOCG00000000082) #33	Smim9 (ENSMOCG00000003619)	ENSMOCG00000001114	F8 (ENSMOCG00000006178) #35
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000010870 #9	Hcfc1 (ENSPEMG00000011837) #10	Irak1 (ENSPEMG00000001469) #11	ENSPEMG00000025112	Mecp2 (ENSPEMG00000015115) #12	Opn1mw (ENSPEMG00000010994) #13	Tex28 (ENSPEMG00000009005) #14	Tktl1 (ENSPEMG00000012644) #15	Flna (ENSPEMG00000009562) #17	Emd (ENSPEMG00000012081) #16	ENSPEMG00000015703 ##18	Dnase1l1 (ENSPEMG00000013008)	Tafazzin (ENSPEMG00000007822) #19	Atp6ap1 (ENSPEMG00000009724) #20	Gdi1 (ENSPEMG00000010952) #21	Fam50a (ENSPEMG00000001727) #22	Plxna3 (ENSPEMG00000012781) #23	Lage3 (ENSPEMG00000011229) #24	Ubl4a (ENSPEMG00000027881) #25	Fam3a (ENSPEMG00000004757) #27	ENSPEMG00000017532 #28	Ikbkg (ENSPEMG00000031110) #29	ENSPEMG00000029875 #30	ENSPEMG00000027888 #30	ENSPEMG00000026245 #30	Or7r1 (ENSPEMG00000009130)	Or13ae2 (ENSPEMG00000025767)	Gab3 (ENSPEMG00000012634) #31	Dkc1 (ENSPEMG00000013348) #32	ENSPEMG00000022395 #8	Mpp1 (ENSPEMG00000014261) #33
Murinae	ANCESTRAL SPECIES	14	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.a.b ##18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00390000016992	ENSGT00390000000062.x.b.k.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #31
Mus	ANCESTRAL SPECIES	9	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.a.b ##18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a.o #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35
Mus_A	ANCESTRAL SPECIES	15	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.a.b ##18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a.o #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00390000000062.x.b.k.b	ENSGT00390000000062.x.b.l.b	ENSGT00390000001700.a.b.b	ENSGT00940000159803 #31	ENSGT00510000047092 #32
Mus_B	ANCESTRAL SPECIES	14	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a.o #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00390000001700.a.b.b.o.a	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685
Mus_C	ANCESTRAL SPECIES	27	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a.o #28	ENSGT00530000063808.a #29	ENSGT00410000025802.g.b.q.a #30	ENSGT01050000244815.B.a.a	ENSGT01100000263574.b.j	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35	ENSGT00940000154783.f #37
spretus	MODERN SPECIES	19	Naa10 (MGP_SPRETEiJ_G0034321) #8	Renbp (MGP_SPRETEiJ_G0034322) #9	Hcfc1 (MGP_SPRETEiJ_G0034323) #10	Irak1 (MGP_SPRETEiJ_G0034324) #11	Mecp2 (MGP_SPRETEiJ_G0034325) #12	Opn1mw (MGP_SPRETEiJ_G0034326) #13	Tex28 (MGP_SPRETEiJ_G0034327) #14	Tktl1 (MGP_SPRETEiJ_G0034328) #15	Flna (MGP_SPRETEiJ_G0034329) #17	Emd (MGP_SPRETEiJ_G0034330) #16	MGP_SPRETEiJ_G0034331 #18	Dnase1l1 (MGP_SPRETEiJ_G0034332)	Tafazzin (MGP_SPRETEiJ_G0034333) #19	Atp6ap1 (MGP_SPRETEiJ_G0034334) #20	Gdi1 (MGP_SPRETEiJ_G0034335) #21	Fam50a (MGP_SPRETEiJ_G0034336) #22	Plxna3 (MGP_SPRETEiJ_G0034337) #23	Lage3 (MGP_SPRETEiJ_G0034338) #24	Ubl4a (MGP_SPRETEiJ_G0034339) #25	Slc10a3 (MGP_SPRETEiJ_G0034340) #26	Fam3a (MGP_SPRETEiJ_G0034341) #27	Ikbkg (MGP_SPRETEiJ_G0034342) #29	G6pdx (MGP_SPRETEiJ_G0034343) #28	MGP_SPRETEiJ_G0034344 #30	Or7r1 (MGP_SPRETEiJ_G0034345)	Or13ae2 (MGP_SPRETEiJ_G0034346)	MGP_SPRETEiJ_G0034347	MGP_SPRETEiJ_G0034348 #30	Dkc1 (MGP_SPRETEiJ_G0034351) #32	Mpp1 (MGP_SPRETEiJ_G0034352) #33	Smim9 (MGP_SPRETEiJ_G0034353)
Steppe mouse	MODERN SPECIES	1762														ENSMSIG00000025685 #20	Gdi1 (ENSMSIG00000025652) #21	Fam50a (ENSMSIG00000025621) #22	Plxna3 (ENSMSIG00000025574) #23	Ubl4a (ENSMSIG00000025541) #25
Mouse	MODERN SPECIES	37	Naa10 (ENSMUSG00000031388) #8	Renbp (ENSMUSG00000031387) #9	Hcfc1 (ENSMUSG00000031386) #10	Irak1 (ENSMUSG00000031392) #11	Mecp2 (ENSMUSG00000031393) #12	Opn1mw (ENSMUSG00000031394) #13	Tex28 (ENSMUSG00000062564) #14	Tktl1 (ENSMUSG00000031397) #15	Flna (ENSMUSG00000031328) #17	Emd (ENSMUSG00000001964) #16	Rpl10 (ENSMUSG00000008682) ##18	Dnase1l1 (ENSMUSG00000019088)	Tafazzin (ENSMUSG00000009995) #19	Atp6ap1 (ENSMUSG00000019087) #20	Gdi1 (ENSMUSG00000015291) #21	Fam50a (ENSMUSG00000001962) #22	Plxna3 (ENSMUSG00000031398) #23	Lage3 (ENSMUSG00000015289) #24	Ubl4a (ENSMUSG00000015290) #25	Slc10a3 (ENSMUSG00000032806) #26	Fam3a (ENSMUSG00000031399) #27	Ikbkg (ENSMUSG00000004221) #29	G6pdx (ENSMUSG00000031400) #28	Ctag2l1 (ENSMUSG00000079536) #30	Or7r1 (ENSMUSG00000043715)	Or13ae2 (ENSMUSG00000051706)	Pwwp4c (ENSMUSG00000079534)	Ctag2l2 (ENSMUSG00000079532) #30	Pwwp4d (ENSMUSG00000079531)	Gab3 (ENSMUSG00000032750) #31	Dkc1 (ENSMUSG00000031403) #32
Ryukyu mouse	MODERN SPECIES	19	Naa10 (MGP_CAROLIEiJ_G0033166) #8	Renbp (MGP_CAROLIEiJ_G0033167) #9	Hcfc1 (MGP_CAROLIEiJ_G0033168) #10	Irak1 (MGP_CAROLIEiJ_G0033169) #11	Mecp2 (MGP_CAROLIEiJ_G0033170) #12	Opn1mw (MGP_CAROLIEiJ_G0033171) #13	Tex28 (MGP_CAROLIEiJ_G0033172) #14	Tktl1 (MGP_CAROLIEiJ_G0033173) #15	Flna (MGP_CAROLIEiJ_G0033174) #17	Emd (MGP_CAROLIEiJ_G0033175) #16	MGP_CAROLIEiJ_G0033176 ##18	Dnase1l1 (MGP_CAROLIEiJ_G0033177)	Tafazzin (MGP_CAROLIEiJ_G0033178) #19	Atp6ap1 (MGP_CAROLIEiJ_G0033179) #20	Gdi1 (MGP_CAROLIEiJ_G0033180) #21	Fam50a (MGP_CAROLIEiJ_G0033181) #22	Plxna3 (MGP_CAROLIEiJ_G0033182) #23	Lage3 (MGP_CAROLIEiJ_G0033183) #24	Ubl4a (MGP_CAROLIEiJ_G0033184) #25	Slc10a3 (MGP_CAROLIEiJ_G0033185) #26	Fam3a (MGP_CAROLIEiJ_G0033186) #27	Ikbkg (MGP_CAROLIEiJ_G0033187) #29	G6pdx (MGP_CAROLIEiJ_G0033188) #28	Or7r1 (MGP_CAROLIEiJ_G0033189)	Or13ae2 (MGP_CAROLIEiJ_G0033190)	Dkc1 (MGP_CAROLIEiJ_G0033191) #32	Mpp1 (MGP_CAROLIEiJ_G0033192) #33	Smim9 (MGP_CAROLIEiJ_G0033193)	F8 (MGP_CAROLIEiJ_G0033194) #35	Fundc2 (MGP_CAROLIEiJ_G0033195) #37	Cmc4 (MGP_CAROLIEiJ_G0033196)
Shrew mouse	MODERN SPECIES	23	Naa10 (MGP_PahariEiJ_G0031709) #8	Renbp (MGP_PahariEiJ_G0031710) #9	Hcfc1 (MGP_PahariEiJ_G0031711) #10	Irak1 (MGP_PahariEiJ_G0031712) #11	Mecp2 (MGP_PahariEiJ_G0031713) #12	Opn1mw (MGP_PahariEiJ_G0031714) #13	Tex28 (MGP_PahariEiJ_G0031715) #14	MGP_PahariEiJ_G0031716 #15	Flna (MGP_PahariEiJ_G0031717) #17	Emd (MGP_PahariEiJ_G0031718) #16	MGP_PahariEiJ_G0031719 ##18	Dnase1l1 (MGP_PahariEiJ_G0031720)	Tafazzin (MGP_PahariEiJ_G0031721) #19	Atp6ap1 (MGP_PahariEiJ_G0031722) #20	Gdi1 (MGP_PahariEiJ_G0031723) #21	Fam50a (MGP_PahariEiJ_G0031724) #22	Plxna3 (MGP_PahariEiJ_G0031725) #23	Lage3 (MGP_PahariEiJ_G0031726) #24	Ubl4a (MGP_PahariEiJ_G0031727) #25	Slc10a3 (MGP_PahariEiJ_G0031728) #26	Fam3a (MGP_PahariEiJ_G0031729) #27	Ikbkg (MGP_PahariEiJ_G0031730) #29	G6pdx (MGP_PahariEiJ_G0031731) #28	Or7r1 (MGP_PahariEiJ_G0031732)	Or13ae2 (MGP_PahariEiJ_G0031733)	Gab3 (MGP_PahariEiJ_G0031734) #31	Dkc1 (MGP_PahariEiJ_G0031735) #32	Mpp1 (MGP_PahariEiJ_G0031736) #33	Smim9 (MGP_PahariEiJ_G0031737)	F8 (MGP_PahariEiJ_G0031738) #35	Fundc2 (MGP_PahariEiJ_G0031739) #37
Rat	DUPLICATION
Rat	MODERN SPECIES	46	Renbp (ENSRNOG00000054765) #9	Hcfc1 (ENSRNOG00000051948) #10	Irak1 (ENSRNOG00000060869) #11	Mecp2 (ENSRNOG00000056659) #12	Opn1mw (ENSRNOG00000051529) #13	Tex28 (ENSRNOG00000051438) #14	Tktl1 (ENSRNOG00000055557) #15	Flna (ENSRNOG00000054890) #17	Emd (ENSRNOG00000058882) #16	Rpl10 (ENSRNOG00000056765) #18	Dnase1l1 (ENSRNOG00000055641)	ENSRNOG00000063225	Tafazzin (ENSRNOG00000053023) #19	Atp6ap1 (ENSRNOG00000054352) #20	Gdi1 (ENSRNOG00000056870) #21	Fam50a (ENSRNOG00000058439) #22	Plxna3 (ENSRNOG00000060464) #23	Lage3 (ENSRNOG00000053456)	Slc10a3 (ENSRNOG00000060580) #26	Ubl4a (ENSRNOG00000053061) #25	Fam3a (ENSRNOG00000060623) #27	G6pd (ENSRNOG00000056728) #28	Ikbkg (ENSRNOG00000060936) #29	LOC690348 (ENSRNOG00000060839) #30	Or7r1 (ENSRNOG00000058820)	LOC120099253 (ENSRNOG00000061511) #30	ENSRNOG00000067246
Rat	MODERN SPECIES	14	Vamp8 (ENSRNOG00000012748)	Ggcx (ENSRNOG00000012975)	Mat2a (ENSRNOG00000013520)	Sh2d6 (ENSRNOG00000013605)	Capg (ENSRNOG00000013668)	Elmod3 (ENSRNOG00000038102)	Retsat (ENSRNOG00000014090)	Tgoln2 (ENSRNOG00000014617)	Tcf7l1 (ENSRNOG00000014753)	Kcmf1 (ENSRNOG00000015097)	Tmsb10 (ENSRNOG00000064090)	Dnah6 (ENSRNOG00000015581)	Suclg1 (ENSRNOG00000005587)	Jkampl (ENSRNOG00000024604)	Ptbp1-ps3 (ENSRNOG00000070516)	ENSRNOG00000071146 #22	ENSRNOG00000066158	Ctnna2 (ENSRNOG00000006003)	LRRTM1 (ENSRNOG00000006093)	Reg3b (ENSRNOG00000006151)	Reg3a (ENSRNOG00000006360)	Reg1a (ENSRNOG00000006486)	Reg3g (ENSRNOG00000006579)	Lrrtm4 (ENSRNOG00000021938)	ENSRNOG00000064641	AABR07061254.1 (ENSRNOG00000038024)	Gcfc2 (ENSRNOG00000006888)	Mrpl19 (ENSRNOG00000006968)	Eva1a (ENSRNOG00000007118)	ENSRNOG00000063971	Tacr1 (ENSRNOG00000005853)
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT01050000244815.B.a.a	ENSGT00410000025802.g.b #30	ENSGT00940000159803 #31	ENSGT00510000047092 #32	ENSGT00940000158744 #33	ENSGT00390000005685	ENSGT00940000160294 #35	ENSGT00940000163020
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A #22	ENSGT01050000244850.A.a #23	ENSGT00410000025802.g.a #24	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT01050000244815.B.a.a
Marmotini	DUPLICATION
Marmotini	ANCESTRAL SPECIES	83	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A.e #22	ENSGT01050000244850.A.a #23	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT01050000244815.B.a.a
Alpin marmot	MODERN SPECIES	136	ARHGAP4 (ENSMMMG00000008497) #7	ENSMMMG00000009143 #8	RENBP (ENSMMMG00000009149) #9	HCFC1 (ENSMMMG00000009171) #10	IRAK1 (ENSMMMG00000009239) #11	MECP2 (ENSMMMG00000009970) #12	ENSMMMG00000010010 #13	TEX28 (ENSMMMG00000010023) #14	TKTL1 (ENSMMMG00000010036) #15	FLNA (ENSMMMG00000010080) #17	EMD (ENSMMMG00000014270) #16	ENSMMMG00000014279 #18	DNASE1L1 (ENSMMMG00000014299)	TAFAZZIN (ENSMMMG00000014302) #19	GDI1 (ENSMMMG00000014475) #21	FAM50A (ENSMMMG00000014490) #22	PLXNA3 (ENSMMMG00000014513) #23	UBL4A (ENSMMMG00000014537) #25	SLC10A3 (ENSMMMG00000014545) #26	FAM3A (ENSMMMG00000014550) #27	G6PD (ENSMMMG00000014645) #28	IKBKG (ENSMMMG00000014671) #29	ENSMMMG00000014778
Marmotini_b	ANCESTRAL SPECIES	124	ENSGT00550000074803 #8	ENSGT00390000013740 #9	ENSGT00940000161383 #10	ENSGT00940000160502 #11	ENSGT00530000063687.b.b.b #12	ENSGT01030000234549.a.a.a.b #13	ENSGT00940000162843 #14	ENSGT00940000162426 #15	ENSGT00940000153588.b #17	ENSGT00390000002034 #16	ENSGT00390000003897.s.b.a.b.b #18	ENSGT00950000182846.a.a.a.a.a	ENSGT00390000018621 #19	ENSGT00940000156650 #20	ENSGT00950000182994.B.a.a.a #21	ENSGT00390000004735.A.e #22	ENSGT01050000244850.A.a #23	ENSGT00730000111022 #25	ENSGT00950000182808.b.b #26	ENSGT00950000183004.a.a.a.b #27	ENSGT00530000063435.a #28	ENSGT00530000063808.a #29	ENSGT01050000244815.B.a.a
Squirrel	MODERN SPECIES	409	NAA10 (ENSSTOG00000010237) #8	RENBP (ENSSTOG00000010247) #9	HCFC1 (ENSSTOG00000029220) #10	IRAK1 (ENSSTOG00000007991) #11	MECP2 (ENSSTOG00000006094) #12	ENSSTOG00000024701 #13	TEX28 (ENSSTOG00000022078) #14	TKTL1 (ENSSTOG00000005014) #15	FLNA (ENSSTOG00000005036) #17	EMD (ENSSTOG00000014689) #16	ENSSTOG00000011857 #18	DNASE1L1 (ENSSTOG00000011867)	TAFAZZIN (ENSSTOG00000011873) #19	ATP6AP1 (ENSSTOG00000004401) #20	GDI1 (ENSSTOG00000004429) #21	ENSSTOG00000004448 #22	PLXNA3 (ENSSTOG00000003432) #23	UBL4A (ENSSTOG00000022150) #25	SLC10A3 (ENSSTOG00000026515) #26	FAM3A (ENSSTOG00000022234) #27	IKBKG (ENSSTOG00000011082) #29	G6PD (ENSSTOG00000021077) #28	ENSSTOG00000027400
Arctic ground squirrel	MODERN SPECIES	823									FLNA (ENSUPAG00010000336) #17	EMD (ENSUPAG00010000276) #16	ENSUPAG00010000252 ##18	DNASE1L1 (ENSUPAG00010000232)	TAFAZZIN (ENSUPAG00010000055) #19	ATP6AP1 (ENSUPAG00010011086) #20	GDI1 (ENSUPAG00010011085) #21	ENSUPAG00010011078 #22	PLXNA3 (ENSUPAG00010011001) #23	ENSUPAG00010010993	ENSUPAG00010010991 #24	SLC10A3 (ENSUPAG00010010974) #26	FAM3A (ENSUPAG00010010917) #27	IKBKG (ENSUPAG00010010819) #29	ENSUPAG00010010808	ENSUPAG00010010804	ENSUPAG00010010787	ENSUPAG00010010780 ##24	ENSUPAG00010010746 #30
Marmotini	ANCESTRAL SPECIES																	ENSGT00390000004735.A.f #22
Marmotini_b	DUPLICATION
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000004735.A.f.a #22
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	430																ENSSTOG00000030695 #22
Squirrel	MODERN SPECIES	538																ENSSTOG00000034161 #22
Arctic ground squirrel	MODERN SPECIES	686													ENSUPAG00010003770	SLC25A24 (ENSUPAG00010003749)	ENSUPAG00010003655	ENSUPAG00010003644 #22
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000004735.A.f.b #22
Squirrel	MODERN SPECIES	331											PRMT6 (ENSSTOG00000010675)	NTNG1 (ENSSTOG00000004945)	VAV3 (ENSSTOG00000004968)	SLC25A24 (ENSSTOG00000025446)	ENSSTOG00000024778	ENSSTOG00000026658 #22	ENSSTOG00000020565
Arctic ground squirrel	MODERN SPECIES	1104																ENSUPAG00010000264 #22
Eurasian red squirrel	MODERN SPECIES	156	RENBP (ENSSVLG00005019023) #9	HCFC1 (ENSSVLG00005018524) #10	ENSSVLG00005018093 #11	MECP2 (ENSSVLG00005017899) #12	ENSSVLG00005017793 #13	ENSSVLG00005017738	TEX28 (ENSSVLG00005017596) #14	TKTL1 (ENSSVLG00005017318) #15	EMD (ENSSVLG00005019520) #16	FLNA (ENSSVLG00005018546) #17	ENSSVLG00005018375 #18	DNASE1L1 (ENSSVLG00005018343)	TAFAZZIN (ENSSVLG00005018196) #19	ATP6AP1 (ENSSVLG00005018016) #20	GDI1 (ENSSVLG00005017962) #21	FAM50A (ENSSVLG00005017921) #22	PLXNA3 (ENSSVLG00005017881) #23	LAGE3 (ENSSVLG00005017858) #24	UBL4A (ENSSVLG00005017819) #25	SLC10A3 (ENSSVLG00005017774) #26	FAM3A (ENSSVLG00005017584) #27	G6PD (ENSSVLG00005017520) #28	IKBKG (ENSSVLG00005017293) #29	ENSSVLG00005017218	ENSSVLG00005017166	ENSSVLG00005017122	ENSSVLG00005017050 ##24	ENSSVLG00005016985	GAB3 (ENSSVLG00005016708) #31	DKC1 (ENSSVLG00005016642) #32	MPP1 (ENSSVLG00005016498) #33