Amniota	ANCESTRAL SPECIES	10	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797
Mammalia	ANCESTRAL SPECIES	14	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797
Theria	ANCESTRAL SPECIES	26	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Eutheria	ANCESTRAL SPECIES	13	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Boreoeutheria	ANCESTRAL SPECIES	16	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Euarchontoglires	ANCESTRAL SPECIES	16	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Primates	ANCESTRAL SPECIES	16	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Haplorrhini	ANCESTRAL SPECIES	11	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Simiiformes	ANCESTRAL SPECIES	17	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Catarrhini	ANCESTRAL SPECIES	18	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.ab
Cercopithecidae	ANCESTRAL SPECIES	15	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.a.a ##21	ENSGT01030000234750 #20	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00910000147969	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.ab
Cercopithecinae	ANCESTRAL SPECIES	15	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.a.a ##21	ENSGT01030000234750 #20	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00910000147969	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.ab
Cercopithecinae_a	ANCESTRAL SPECIES	14	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.a.a ##21	ENSGT01030000234750 #20	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00910000147969	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.ab
Cercopithecinae_b	ANCESTRAL SPECIES	14	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00390000012628.a.a.d.c.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT01030000234750 #20	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00910000147969	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.ab
Cercopithecinae_d	ANCESTRAL SPECIES	211												ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT01030000234750 #20	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00910000148118 #27	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30
Sooty mangabey	MODERN SPECIES	319												TCERG1L (ENSCATG00000011359) #18	GLRX3 (ENSCATG00000003006) #19	C10orf143 (ENSCATG00000007567) #20	ENSCATG00000012229 #21	EBF3 (ENSCATG00000012770) #22	MGMT (ENSCATG00000002565) #23	MKI67 (ENSCATG00000031996) #24	PTPRE (ENSCATG00000032563) #25	ENSCATG00000029960 #26	ENSCATG00000033274 #27	CLRN3 (ENSCATG00000034290) #28	FOXI2 (ENSCATG00000031025) #29	NPS (ENSCATG00000034109) #30
Drill	MODERN SPECIES	1666													GLRX3 (ENSMLEG00000031636) #19	C10orf143 (ENSMLEG00000033208) #20	ENSMLEG00000034252 #21	EBF3 (ENSMLEG00000027573) #22	MGMT (ENSMLEG00000040070) #23
Olive baboon	MODERN SPECIES	2	ENSPANG00000037621	PWWP2B (ENSPANG00000031758)	LRRC27 (ENSPANG00000020135)	ENSPANG00000034250	STK32C (ENSPANG00000020132)	DPYSL4 (ENSPANG00000020130)	JAKMIP3 (ENSPANG00000020129)	BNIP3 (ENSPANG00000020128)	PPP2R2D (ENSPANG00000020156)	ENSPANG00000037952	TCERG1L (ENSPANG00000045000) #18	ENSPANG00000047481	ENSPANG00000024664	GLRX3 (ENSPANG00000020159) #19	C10orf143 (ENSPANG00000035954) #20	EBF3 (ENSPANG00000020188) #22	MGMT (ENSPANG00000020189) #23	ENSPANG00000045620	ENSPANG00000048991	MKI67 (ENSPANG00000020190) #24	PTPRE (ENSPANG00000020198) #25	CLRN3 (ENSPANG00000020194) #28	ENSPANG00000050452	FOXI2 (ENSPANG00000020235) #29	NPS (ENSPANG00000020243) #30	DOCK1 (ENSPANG00000020237)	INSYN2A (ENSPANG00000020241)	C10orf90 (ENSPANG00000020261)	ENSPANG00000043403	ADAM12 (ENSPANG00000020265)	FANK1 (ENSPANG00000020263)
Macaca	ANCESTRAL SPECIES	11	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.a.a ##21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.ab	ENSGT00390000009853
Macaca_a	ANCESTRAL SPECIES	13	ENSGT01030000240187	ENSGT00940000160175.b	ENSGT00910000147499	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000163244.d.b.b.a.b.a.a	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.ab	ENSGT00390000009853
Crab-eating macaque	MODERN SPECIES	19	NKX6-2 (ENSMFAG00000045566)	INPP5A (ENSMFAG00000003838)	LRRC27 (ENSMFAG00000044506)	ENSMFAG00000001844	STK32C (ENSMFAG00000004135)	DPYSL4 (ENSMFAG00000033070)	JAKMIP3 (ENSMFAG00000032603)	BNIP3 (ENSMFAG00000036887)	PPP2R2D (ENSMFAG00000001365)	ENSMFAG00000054408	TCERG1L (ENSMFAG00000043079) #18	GLRX3 (ENSMFAG00000001366) #19	ENSMFAG00000014400	ENSMFAG00000059881	C10orf143 (ENSMFAG00000031525) #20	EBF3 (ENSMFAG00000041034) #22	MGMT (ENSMFAG00000051214) #23	ENSMFAG00000053394	MKI67 (ENSMFAG00000037072) #24	PTPRE (ENSMFAG00000003527) #25	CLRN3 (ENSMFAG00000003701) #28	FOXI2 (ENSMFAG00000057445) #29	NPS (ENSMFAG00000050665) #30	INSYN2A (ENSMFAG00000036937)	DOCK1 (ENSMFAG00000045941)	C10orf90 (ENSMFAG00000041837)	ADAM12 (ENSMFAG00000039461)	FANK1 (ENSMFAG00000032085)	DHX32 (ENSMFAG00000045315)	ENSMFAG00000041850	UROS (ENSMFAG00000043500)
Rhesus	MODERN SPECIES	19	ENSMMUG00000058183	ADGRA1 (ENSMMUG00000006087)	CFAP46 (ENSMMUG00000057584)	ENSMMUG00000061205	NKX6-2 (ENSMMUG00000062598)	INPP5A (ENSMMUG00000003802)	LRRC27 (ENSMMUG00000022366)	STK32C (ENSMMUG00000022364)	DPYSL4 (ENSMMUG00000022363)	JAKMIP3 (ENSMMUG00000022358)	BNIP3 (ENSMMUG00000022445)	PPP2R2D (ENSMMUG00000022443)	TCERG1L (ENSMMUG00000010593) #18	GLRX3 (ENSMMUG00000018429) #19	C10orf143 (ENSMMUG00000056809) #20	EBF3 (ENSMMUG00000011447) #22	MGMT (ENSMMUG00000011446) #23	ENSMMUG00000059108	ENSMMUG00000064746	ENSMMUG00000063244	MKI67 (ENSMMUG00000044121) #24	PTPRE (ENSMMUG00000005383) #25	CLRN3 (ENSMMUG00000057106) #28	FOXI2 (ENSMMUG00000052332) #29	NPS (ENSMMUG00000059060) #30	INSYN2A (ENSMMUG00000018550)	DOCK1 (ENSMMUG00000018547)	C9H10orf90 (ENSMMUG00000009663)	ADAM12 (ENSMMUG00000009661)	FANK1 (ENSMMUG00000009655)	DHX32 (ENSMMUG00000008542)
Pig-tailed macaque	MODERN SPECIES	92	INPP5A (ENSMNEG00000014000)	ENSMNEG00000039362	PWWP2B (ENSMNEG00000042807)	LRRC27 (ENSMNEG00000032457)	ENSMNEG00000037290	STK32C (ENSMNEG00000038913)	DPYSL4 (ENSMNEG00000028602)	JAKMIP3 (ENSMNEG00000037053)	BNIP3 (ENSMNEG00000027490)	PPP2R2D (ENSMNEG00000041123)	ENSMNEG00000043061	TCERG1L (ENSMNEG00000040017) #18	GLRX3 (ENSMNEG00000042803) #19	ENSMNEG00000042722 ##21	C10orf143 (ENSMNEG00000031982) #20	EBF3 (ENSMNEG00000039157) #22	MGMT (ENSMNEG00000039334) #23	MKI67 (ENSMNEG00000032752) #24	ENSMNEG00000039868 #26	PTPRE (ENSMNEG00000032259) #25	CLRN3 (ENSMNEG00000042511) #28	FOXI2 (ENSMNEG00000029819) #29	NPS (ENSMNEG00000027536) #30	INSYN2A (ENSMNEG00000026944)	DOCK1 (ENSMNEG00000034603)	C10orf90 (ENSMNEG00000036885)	ADAM12 (ENSMNEG00000038213)	FANK1 (ENSMNEG00000029956)	DHX32 (ENSMNEG00000044757)	ENSMNEG00000032819	UROS (ENSMNEG00000035411)
Vervet Monkey	MODERN SPECIES	28			CFAP46 (ENSCSAG00000004352)	NKX6-2 (ENSCSAG00000004366)	INPP5A (ENSCSAG00000004369)	PWWP2B (ENSCSAG00000004377)	LRRC27 (ENSCSAG00000004380)	STK32C (ENSCSAG00000004384)	DPYSL4 (ENSCSAG00000004390)	JAKMIP3 (ENSCSAG00000004396)	BNIP3 (ENSCSAG00000004399)	PPP2R2D (ENSCSAG00000004401)	TCERG1L (ENSCSAG00000004410) #18	GLRX3 (ENSCSAG00000004419) #19	C10orf143 (ENSCSAG00000004426) #20	EBF3 (ENSCSAG00000004432) #22	MGMT (ENSCSAG00000004436) #23	MKI67 (ENSCSAG00000004442) #24	PTPRE (ENSCSAG00000004446) #25	CLRN3 (ENSCSAG00000004448) #28	FOXI2 (ENSCSAG00000004451) #29	NPS (ENSCSAG00000004454) #30	INSYN2A (ENSCSAG00000004457)	DOCK1 (ENSCSAG00000004464)	C10orf90 (ENSCSAG00000004473)	ADAM12 (ENSCSAG00000004479)	FANK1 (ENSCSAG00000004483)	DHX32 (ENSCSAG00000004486)	ENSCSAG00000004489	UROS (ENSCSAG00000004491)	MMP21 (ENSCSAG00000004494)
Rhinopithecus	ANCESTRAL SPECIES	705												ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22
Golden snub-nosed monkey	MODERN SPECIES	2690																EBF3 (ENSRROG00000032059) #22
Black snub-nosed monkey	MODERN SPECIES	514												TCERG1L (ENSRBIG00000038246) #18	GLRX3 (ENSRBIG00000043414) #19	ENSRBIG00000044958 #21	C10orf143 (ENSRBIG00000028485) #20	EBF3 (ENSRBIG00000029615) #22
Hominoidea	ANCESTRAL SPECIES	11	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00910000147135 #26	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.ab
Gibbon	MODERN SPECIES	18	ENSNLEG00000002037	ADGRA1 (ENSNLEG00000002030)	CFAP46 (ENSNLEG00000002014)	ENSNLEG00000002002	INPP5A (ENSNLEG00000001956)	LRRC27 (ENSNLEG00000001851)	STK32C (ENSNLEG00000001762)	DPYSL4 (ENSNLEG00000001685)	JAKMIP3 (ENSNLEG00000001649)	ENSNLEG00000030570	PPP2R2D (ENSNLEG00000029271)	ENSNLEG00000001536 #18	ENSNLEG00000027088 #19	C10orf143 (ENSNLEG00000035256) #20	ENSNLEG00000031945 #21	ENSNLEG00000001518 #22	MGMT (ENSNLEG00000001509) #23	MKI67 (ENSNLEG00000001417) #24	PTPRE (ENSNLEG00000001341) #25	ENSNLEG00000031469 #26	CLRN3 (ENSNLEG00000000581) #28	FOXI2 (ENSNLEG00000000577) #29	NPS (ENSNLEG00000000575) #30	DOCK1 (ENSNLEG00000000434)	INSYN2A (ENSNLEG00000000568)	C10orf90 (ENSNLEG00000000894)	ADAM12 (ENSNLEG00000000851)	FANK1 (ENSNLEG00000000831)	DHX32 (ENSNLEG00000000755)	ENSNLEG00000000725	UROS (ENSNLEG00000000688)
Hominidae	ANCESTRAL SPECIES	13	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.ab	ENSGT00390000009853
Orangutan	MODERN SPECIES	1	ENSPPYG00000035206	NKX6-2 (ENSPPYG00000002780)	INPP5A (ENSPPYG00000002779)	ENSPPYG00000002776	LRRC27 (ENSPPYG00000002775)	ENSPPYG00000030293	STK32C (ENSPPYG00000002774)	DPYSL4 (ENSPPYG00000002773)	JAKMIP3 (ENSPPYG00000002772)	ENSPPYG00000002771	PPP2R2D (ENSPPYG00000002770)	TCERG1L (ENSPPYG00000002769) #18	GLRX3 (ENSPPYG00000002768) #19	ENSPPYG00000002767 #21	C10orf143 (ENSPPYG00000041588) #20	EBF3 (ENSPPYG00000002766) #22	MGMT (ENSPPYG00000002765) #23	MKI67 (ENSPPYG00000002763) #24	PTPRE (ENSPPYG00000002762) #25	CLRN3 (ENSPPYG00000002761) #28	FOXI2 (ENSPPYG00000002837) #29	ENSPPYG00000002760	NPS (ENSPPYG00000002759) #30	INSYN2A (ENSPPYG00000002758)	DOCK1 (ENSPPYG00000002757)	C10orf90 (ENSPPYG00000002756)	ADAM12 (ENSPPYG00000002755)	FANK1 (ENSPPYG00000002754)	DHX32 (ENSPPYG00000002753)	BCCIP (ENSPPYG00000002752)	UROS (ENSPPYG00000002751)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	17	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.ab	ENSGT00390000009853
Homo/Pan group	ANCESTRAL SPECIES	18	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.ab	ENSGT00390000009853
Pan	ANCESTRAL SPECIES	16	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00410000028211	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT00950000182767.b.b.d.hb.b.b #21	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.ab	ENSGT00390000009853
Bonobo	MODERN SPECIES	1	INPP5A (ENSPPAG00000042036)	ENSPPAG00000043287	PWWP2B (ENSPPAG00000030691)	LRRC27 (ENSPPAG00000037277)	ENSPPAG00000038412	STK32C (ENSPPAG00000041312)	DPYSL4 (ENSPPAG00000035043)	JAKMIP3 (ENSPPAG00000040235)	ENSPPAG00000042885	ENSPPAG00000021368	ENSPPAG00000017086	ENSPPAG00000038899 #18	GLRX3 (ENSPPAG00000039990) #19	ENSPPAG00000043209 #21	C10orf143 (ENSPPAG00000022005) #20	ENSPPAG00000035851 #22	MGMT (ENSPPAG00000027616) #23	MKI67 (ENSPPAG00000037634) #24	PTPRE (ENSPPAG00000009555) #25	CLRN3 (ENSPPAG00000040282) #28	FOXI2 (ENSPPAG00000039312) #29	NPS (ENSPPAG00000028558) #30	INSYN2A (ENSPPAG00000035245)	DOCK1 (ENSPPAG00000040838)	C10orf90 (ENSPPAG00000040831)	ADAM12 (ENSPPAG00000028636)	ENSPPAG00000035905	FANK1 (ENSPPAG00000027396)	DHX32 (ENSPPAG00000034148)	ENSPPAG00000021151	UROS (ENSPPAG00000029805)
Chimpanzee	MODERN SPECIES	1	NKX6-2 (ENSPTRG00000003080)	INPP5A (ENSPTRG00000003079)	ENSPTRG00000029651	PWWP2B (ENSPTRG00000029653)	LRRC27 (ENSPTRG00000003075)	ENSPTRG00000045473	STK32C (ENSPTRG00000003074)	DPYSL4 (ENSPTRG00000003073)	JAKMIP3 (ENSPTRG00000003069)	BNIP3 (ENSPTRG00000003067)	PPP2R2D (ENSPTRG00000003065)	TCERG1L (ENSPTRG00000003063) #18	GLRX3 (ENSPTRG00000003060) #19	ENSPTRG00000043703 #21	C10orf143 (ENSPTRG00000047690) #20	EBF3 (ENSPTRG00000047103) #22	MGMT (ENSPTRG00000003057) #23	MKI67 (ENSPTRG00000003055) #24	PTPRE (ENSPTRG00000003054) #25	CLRN3 (ENSPTRG00000043819) #28	FOXI2 (ENSPTRG00000003052) #29	NPS (ENSPTRG00000033882) #30	INSYN2A (ENSPTRG00000003050)	DOCK1 (ENSPTRG00000003048)	C10H10orf90 (ENSPTRG00000003047)	ADAM12 (ENSPTRG00000003046)	ENSPTRG00000043029	FANK1 (ENSPTRG00000029661)	DHX32 (ENSPTRG00000003044)	BCCIP (ENSPTRG00000003043)	UROS (ENSPTRG00000003042)
Human	MODERN SPECIES	1	KNDC1 (ENSG00000171798)	ADGRA1 (ENSG00000197177)	CFAP46 (ENSG00000171811)	NKX6-2 (ENSG00000148826)	INPP5A (ENSG00000068383)	PWWP2B (ENSG00000171813)	LRRC27 (ENSG00000148814)	STK32C (ENSG00000165752)	DPYSL4 (ENSG00000151640)	JAKMIP3 (ENSG00000188385)	BNIP3 (ENSG00000176171)	PPP2R2D (ENSG00000175470)	TCERG1L (ENSG00000176769) #18	GLRX3 (ENSG00000108010) #19	C10orf143 (ENSG00000237489) #20	EBF3 (ENSG00000108001) #22	MGMT (ENSG00000170430) #23	MKI67 (ENSG00000148773) #24	PTPRE (ENSG00000132334) #25	CLRN3 (ENSG00000180745) #28	FOXI2 (ENSG00000186766) #29	NPS (ENSG00000214285) #30	INSYN2A (ENSG00000188916)	DOCK1 (ENSG00000150760)	C10orf90 (ENSG00000154493)	ADAM12 (ENSG00000148848)	FANK1 (ENSG00000203780)	DHX32 (ENSG00000089876)	BCCIP (ENSG00000107949)	UROS (ENSG00000188690)	MMP21 (ENSG00000154485)
Gorilla	MODERN SPECIES	1	INPP5A (ENSGGOG00000034868)	ENSGGOG00000015105	ENSGGOG00000036798	PWWP2B (ENSGGOG00000016986)	LRRC27 (ENSGGOG00000034904)	ENSGGOG00000036882	STK32C (ENSGGOG00000013188)	DPYSL4 (ENSGGOG00000013179)	JAKMIP3 (ENSGGOG00000001448)	BNIP3 (ENSGGOG00000014520)	PPP2R2D (ENSGGOG00000001330)	TCERG1L (ENSGGOG00000012281) #18	GLRX3 (ENSGGOG00000010771) #19	ENSGGOG00000038753 ##21	C10orf143 (ENSGGOG00000040115) #20	ENSGGOG00000043083 #22	MGMT (ENSGGOG00000016674) #23	ENSGGOG00000028344	MKI67 (ENSGGOG00000004189) #24	PTPRE (ENSGGOG00000004177) #25	CLRN3 (ENSGGOG00000013278) #28	FOXI2 (ENSGGOG00000006743) #29	NPS (ENSGGOG00000025181) #30	INSYN2A (ENSGGOG00000006492)	DOCK1 (ENSGGOG00000015094)	C10orf90 (ENSGGOG00000003162)	ADAM12 (ENSGGOG00000000750)	FANK1 (ENSGGOG00000005594)	DHX32 (ENSGGOG00000010637)	ENSGGOG00000010629	UROS (ENSGGOG00000011415)
Platyrrhini	ANCESTRAL SPECIES	14	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.bb.a	ENSGT00390000009853
Mas night monkey	MODERN SPECIES	558																EBF3 (ENSANAG00000027567) #22	MGMT (ENSANAG00000038439) #23	MKI67 (ENSANAG00000031022) #24	PTPRE (ENSANAG00000034835) #25	CLRN3 (ENSANAG00000025175) #28	FOXI2 (ENSANAG00000031461) #29	NPS (ENSANAG00000023534) #30	INSYN2A (ENSANAG00000027489)	DOCK1 (ENSANAG00000033284)	C10orf90 (ENSANAG00000029910)	ADAM12 (ENSANAG00000030269)	ENSANAG00000023341
Cebidae	ANCESTRAL SPECIES	17	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.cb	ENSGT00390000009853
Marmoset	MODERN SPECIES	3	ENSCJAG00000072392	ENSCJAG00000010091	ENSCJAG00000074031	NKX6-2 (ENSCJAG00000010137)	INPP5A (ENSCJAG00000076817)	PWWP2B (ENSCJAG00000014907)	ENSCJAG00000082205	STK32C (ENSCJAG00000080199)	DPYSL4 (ENSCJAG00000017679)	JAKMIP3 (ENSCJAG00000000231)	BNIP3 (ENSCJAG00000000228)	PPP2R2D (ENSCJAG00000000219)	TCERG1L (ENSCJAG00000014418) #18	ENSCJAG00000014400 #19	C10orf143 (ENSCJAG00000044439) #20	EBF3 (ENSCJAG00000043107) #22	ENSCJAG00000014351 #23	MKI67 (ENSCJAG00000014323) #24	PTPRE (ENSCJAG00000014247) #25	CLRN3 (ENSCJAG00000014242) #28	FOXI2 (ENSCJAG00000014240) #29	NPS (ENSCJAG00000059482) #30	INSYN2A (ENSCJAG00000014231)	DOCK1 (ENSCJAG00000014082)	C10orf90 (ENSCJAG00000012285)	ENSCJAG00000084717	ADAM12 (ENSCJAG00000012314)	FANK1 (ENSCJAG00000012335)	DHX32 (ENSCJAG00000012356)	BCCIP (ENSCJAG00000012411)	UROS (ENSCJAG00000012453)
Cebidae_a	ANCESTRAL SPECIES	13	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00910000146909	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.m #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00960000187700	ENSGT00940000157227	ENSGT00390000000696.cb	ENSGT00390000009853
Bolivian squirrel monkey	MODERN SPECIES	47	KNDC1 (ENSSBOG00000025668)	ADGRA1 (ENSSBOG00000016578)	ENSSBOG00000031369	INPP5A (ENSSBOG00000010737)	PWWP2B (ENSSBOG00000014656)	LRRC27 (ENSSBOG00000021141)	STK32C (ENSSBOG00000032061)	DPYSL4 (ENSSBOG00000035659)	JAKMIP3 (ENSSBOG00000024224)	BNIP3 (ENSSBOG00000024894)	PPP2R2D (ENSSBOG00000021329)	TCERG1L (ENSSBOG00000030382) #18	GLRX3 (ENSSBOG00000030472) #19	ENSSBOG00000004446	C10orf143 (ENSSBOG00000033100) #20	EBF3 (ENSSBOG00000031246) #22	MGMT (ENSSBOG00000032500) #23	ENSSBOG00000031494	MKI67 (ENSSBOG00000025516) #24	PTPRE (ENSSBOG00000029233) #25	ENSSBOG00000019430	CLRN3 (ENSSBOG00000035712) #28	FOXI2 (ENSSBOG00000016469) #29	NPS (ENSSBOG00000031161) #30	DOCK1 (ENSSBOG00000020583)	INSYN2A (ENSSBOG00000025092)	C10orf90 (ENSSBOG00000034014)	ADAM12 (ENSSBOG00000031448)	FANK1 (ENSSBOG00000021643)	ENSSBOG00000029082	DHX32 (ENSSBOG00000034546)
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	107		ENSCCAG00000023415	ENSCCAG00000019537	SREK1 (ENSCCAG00000020591)	ERBIN (ENSCCAG00000036024)	NLN (ENSCCAG00000023638)	ENSCCAG00000020153	SGTB (ENSCCAG00000035826)	TRAPPC13 (ENSCCAG00000026384)	TRIM23 (ENSCCAG00000037354)	PPWD1 (ENSCCAG00000032580)	CENPK (ENSCCAG00000023732)	TCERG1L (ENSCCAG00000029266) #18	ENSCCAG00000032838 #19	C10orf143 (ENSCCAG00000037486) #20	EBF3 (ENSCCAG00000035532) #22	MGMT (ENSCCAG00000036709) #23	MKI67 (ENSCCAG00000033651) #24	PTPRE (ENSCCAG00000024277) #25	CLRN3 (ENSCCAG00000031649) #28	FOXI2 (ENSCCAG00000030117) #29	NPS (ENSCCAG00000027458) #30	DOCK1 (ENSCCAG00000034899)	INSYN2A (ENSCCAG00000030151)	ENSCCAG00000028392	C10orf90 (ENSCCAG00000033735)	ADAM12 (ENSCCAG00000026413)	FANK1 (ENSCCAG00000021326)	ENSCCAG00000015509	DHX32 (ENSCCAG00000023341)	BCCIP (ENSCCAG00000028010)
Capuchin	MODERN SPECIES	171	CASP4 (ENSCCAG00000025091)	PDGFD (ENSCCAG00000033710)	DYNC2H1 (ENSCCAG00000032776)	DCUN1D5 (ENSCCAG00000036060)	MMP13 (ENSCCAG00000001423)	MMP12 (ENSCCAG00000034212)	MMP3 (ENSCCAG00000029156)	MMP1 (ENSCCAG00000021222)	MMP10 (ENSCCAG00000036577)	MMP8 (ENSCCAG00000032628)	MMP27 (ENSCCAG00000034842)	MMP20 (ENSCCAG00000023652)	MMP7 (ENSCCAG00000021369)	ENSCCAG00000028209	ENSCCAG00000015782	ENSCCAG00000026170 #22	ENSCCAG00000017186	TMEM123 (ENSCCAG00000021231)	BIRC2 (ENSCCAG00000029945)
Tarsier	MODERN SPECIES	1154															ENSTSYG00000037038	EBF3 (ENSTSYG00000003544) #22
Strepsirrhini	ANCESTRAL SPECIES	11	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.o #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Lemuriformes	DUPLICATION
Lemuriformes	ANCESTRAL SPECIES	7	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.o #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b.g #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Lemuriformes_a	ANCESTRAL SPECIES	42						ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030.o #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b.g #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Greater bamboo lemur	MODERN SPECIES	335											ENSPSMG00000005069	PPP2R2D (ENSPSMG00000004766)	ENSPSMG00000004523	GLRX3 (ENSPSMG00000004510) #19	C10orf143 (ENSPSMG00000004477) #20	EBF3 (ENSPSMG00000004429) #22	MGMT (ENSPSMG00000004282) #23	PTPRE (ENSPSMG00000004258) #25	CLRN3 (ENSPSMG00000004128) #28	ENSPSMG00000004118 #29	NPS (ENSPSMG00000004108) #30	INSYN2A (ENSPSMG00000004094)	DOCK1 (ENSPSMG00000003931)	ENSPSMG00000003688	ENSPSMG00000003686	ADAM12 (ENSPSMG00000003557)	FANK1 (ENSPSMG00000003450)	DHX32 (ENSPSMG00000003428)	BCCIP (ENSPSMG00000003404)	UROS (ENSPSMG00000003340)	MMP21 (ENSPSMG00000003262)
Coquerels sifaka	MODERN SPECIES	854																ENSPCOG00000016848 #22	MGMT (ENSPCOG00000017485) #23
Mouse lemur	MODERN SPECIES	6			INPP5A (ENSMICG00000047464)	PWWP2B (ENSMICG00000036753)	LRRC27 (ENSMICG00000036674)	STK32C (ENSMICG00000026763)	DPYSL4 (ENSMICG00000000578)	ENSMICG00000032575	JAKMIP3 (ENSMICG00000026657)	ENSMICG00000011985	ENSMICG00000000580	TCERG1L (ENSMICG00000045377) #18	ENSMICG00000041751	ENSMICG00000008544 #19	C10orf143 (ENSMICG00000041553) #20	EBF3 (ENSMICG00000008536) #22	MGMT (ENSMICG00000044094) #23	MKI67 (ENSMICG00000042135) #24	PTPRE (ENSMICG00000044779) #25	CLRN3 (ENSMICG00000012930) #28	FOXI2 (ENSMICG00000012926) #29	NPS (ENSMICG00000031912) #30	INSYN2A (ENSMICG00000034810)	DOCK1 (ENSMICG00000006454)	C10orf90 (ENSMICG00000006223)	ADAM12 (ENSMICG00000006210)	FANK1 (ENSMICG00000006206)	DHX32 (ENSMICG00000006199)	BCCIP (ENSMICG00000006191)	UROS (ENSMICG00000006188)	MMP21 (ENSMICG00000006186)
Lemuriformes	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.h #22
Lemuriformes_a	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.h #22
Coquerels sifaka	MODERN SPECIES	732										ENSPCOG00000028610	ENSPCOG00000019269	PPP2R2D (ENSPCOG00000019165)	TCERG1L (ENSPCOG00000024511) #18	GLRX3 (ENSPCOG00000021174) #19	C10orf143 (ENSPCOG00000024981) #20	ENSPCOG00000016078 #22
Bushbaby	MODERN SPECIES	190	ENSOGAG00000029205	ENSOGAG00000003688	NKX6-2 (ENSOGAG00000034196)	INPP5A (ENSOGAG00000003686)	PWWP2B (ENSOGAG00000026958)	LRRC27 (ENSOGAG00000000705)	STK32C (ENSOGAG00000016434)	DPYSL4 (ENSOGAG00000016432)	JAKMIP3 (ENSOGAG00000016427)	BNIP3 (ENSOGAG00000013258)	PPP2R2D (ENSOGAG00000013253)	ENSOGAG00000025696	ENSOGAG00000034114	ENSOGAG00000028137	GLRX3 (ENSOGAG00000015160) #19	EBF3 (ENSOGAG00000007572) #22	ENSOGAG00000032564 #24	PTPRE (ENSOGAG00000012722) #25	CLRN3 (ENSOGAG00000007530) #28	ENSOGAG00000027739	FOXI2 (ENSOGAG00000005361) #29	DOCK1 (ENSOGAG00000007521)	INSYN2A (ENSOGAG00000025156)	C10orf90 (ENSOGAG00000015528)	ADAM12 (ENSOGAG00000015525)	FANK1 (ENSOGAG00000015521)	DHX32 (ENSOGAG00000010905)	BCCIP (ENSOGAG00000010901)	UROS (ENSOGAG00000010900)	MMP21 (ENSOGAG00000010897)	EDRF1 (ENSOGAG00000010889)
Euarchontoglires_A	ANCESTRAL SPECIES	15	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Tree shrew	MODERN SPECIES	3706																EBF3 (ENSTBEG00000005858) #22	MGMT (ENSTBEG00000005509) #23
Glires	ANCESTRAL SPECIES	16	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Rodentia	ANCESTRAL SPECIES	16	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a.d	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a.d	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797
Hystricomorpha_b	ANCESTRAL SPECIES	14	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a.d	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797
Long-tailed chinchilla	MODERN SPECIES	184	KNDC1 (ENSCLAG00000008097)	ADGRA1 (ENSCLAG00000007830)	CFAP46 (ENSCLAG00000006199)	NKX6-2 (ENSCLAG00000002882)	INPP5A (ENSCLAG00000002531)	PWWP2B (ENSCLAG00000002466)	LRRC27 (ENSCLAG00000002523)	STK32C (ENSCLAG00000002454)	DPYSL4 (ENSCLAG00000002222)	JAKMIP3 (ENSCLAG00000003088)	BNIP3 (ENSCLAG00000002633)	ENSCLAG00000002552	TCERG1L (ENSCLAG00000004268) #18	GLRX3 (ENSCLAG00000003875) #19	C10orf143 (ENSCLAG00000003734) #20	EBF3 (ENSCLAG00000003349) #22	MGMT (ENSCLAG00000002984) #23	PTPRE (ENSCLAG00000007311) #25	CLRN3 (ENSCLAG00000002567) #28	FOXI2 (ENSCLAG00000002504) #29	NPS (ENSCLAG00000002433) #30	INSYN2A (ENSCLAG00000002354)	DOCK1 (ENSCLAG00000002979)	C10orf90 (ENSCLAG00000002496)	ADAM12 (ENSCLAG00000003758)	FANK1 (ENSCLAG00000003154)	DHX32 (ENSCLAG00000012050)	BCCIP (ENSCLAG00000010908)	UROS (ENSCLAG00000011035)	MMP21 (ENSCLAG00000010900)	EDRF1 (ENSCLAG00000002765)
Degu	MODERN SPECIES	51	ENSODEG00000017658	JAKMIP3 (ENSODEG00000016964)	ENSODEG00000020463	ENSODEG00000017046	ENSODEG00000017141	ENSODEG00000017075	ENSODEG00000017156	ENSODEG00000016911	ENSODEG00000018467	ENSODEG00000016944	TCERG1L (ENSODEG00000017091) #18	ENSODEG00000020470	ENSODEG00000017247 #19	C10orf143 (ENSODEG00000017128) #20	ENSODEG00000017102	EBF3 (ENSODEG00000017357) #22	MGMT (ENSODEG00000017257) #23	ENSODEG00000017149	ENSODEG00000020468	PTPRE (ENSODEG00000017386) #25	CLRN3 (ENSODEG00000017134) #28	FOXI2 (ENSODEG00000017334) #29	NPS (ENSODEG00000017172) #30	DOCK1 (ENSODEG00000017379)	INSYN2A (ENSODEG00000017248)	ENSODEG00000017188	ENSODEG00000017410	C10orf90 (ENSODEG00000017207)	ADAM12 (ENSODEG00000017603)	FANK1 (ENSODEG00000017273)	ENSODEG00000020420
Guinea pig	MODERN SPECIES	1	ADGRA1 (ENSCPOG00000004376)	CFAP46 (ENSCPOG00000008507)	NKX6-2 (ENSCPOG00000020442)	INPP5A (ENSCPOG00000015072)	PWWP2B (ENSCPOG00000033892)	LRRC27 (ENSCPOG00000003319)	STK32C (ENSCPOG00000003315)	DPYSL4 (ENSCPOG00000014952)	JAKMIP3 (ENSCPOG00000010444)	BNIP3 (ENSCPOG00000038406)	PPP2R2D (ENSCPOG00000036633)	TCERG1L (ENSCPOG00000001709) #18	ENSCPOG00000002822 #19	ENSCPOG00000039345	C10orf143 (ENSCPOG00000033482) #20	EBF3 (ENSCPOG00000005096) #22	MGMT (ENSCPOG00000033800) #23	ENSCPOG00000008681	PTPRE (ENSCPOG00000014140) #25	CLRN3 (ENSCPOG00000014139) #28	FOXI2 (ENSCPOG00000011791) #29	NPS (ENSCPOG00000020430) #30	DOCK1 (ENSCPOG00000015495)	INSYN2A (ENSCPOG00000015500)	HNRNPA1L2 (ENSCPOG00000021077)	C10orf90 (ENSCPOG00000011106)	ADAM12 (ENSCPOG00000003867)	FANK1 (ENSCPOG00000003862)	DHX32 (ENSCPOG00000006441)	BCCIP (ENSCPOG00000006438)	UROS (ENSCPOG00000004834)
Naked mole-rat female	MODERN SPECIES	4	ENSHGLG00000014102	ENSHGLG00000044778	INPP5A (ENSHGLG00000011306)	PWWP2B (ENSHGLG00000043379)	ENSHGLG00000046735	STK32C (ENSHGLG00000009808)	DPYSL4 (ENSHGLG00000012949)	JAKMIP3 (ENSHGLG00000018781)	ENSHGLG00000016646	ENSHGLG00000016574	ENSHGLG00000033671	TCERG1L (ENSHGLG00000014281) #18	ENSHGLG00000038454	GLRX3 (ENSHGLG00000016229) #19	ENSHGLG00000014516 #20	EBF3 (ENSHGLG00000016339) #22	MGMT (ENSHGLG00000014053) #23	ENSHGLG00000039917	ENSHGLG00000021135	ENSHGLG00000046544 #24	PTPRE (ENSHGLG00000015895) #25	CLRN3 (ENSHGLG00000010190) #28	FOXI2 (ENSHGLG00000010615) #29	NPS (ENSHGLG00000011458) #30	ENSHGLG00000046538	ENSHGLG00000017202	ENSHGLG00000015801	ENSHGLG00000043292	ENSHGLG00000017225	ENSHGLG00000004128	ADAM12 (ENSHGLG00000014915)
Sciuridae	ANCESTRAL SPECIES	21	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Marmotini	ANCESTRAL SPECIES	16	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.s	ENSGT00390000009853	ENSGT00940000159140.d
Alpin marmot	MODERN SPECIES	53	ENSMMMG00000003970	ENSMMMG00000003958	ADGRA1 (ENSMMMG00000003880)	CFAP46 (ENSMMMG00000003686)	INPP5A (ENSMMMG00000003658)	PWWP2B (ENSMMMG00000003646)	ENSMMMG00000003626	STK32C (ENSMMMG00000003606)	DPYSL4 (ENSMMMG00000003578)	JAKMIP3 (ENSMMMG00000003519)	BNIP3 (ENSMMMG00000003504)	PPP2R2D (ENSMMMG00000003482)	TCERG1L (ENSMMMG00000003422) #18	GLRX3 (ENSMMMG00000003400) #19	C10orf143 (ENSMMMG00000003377) #20	EBF3 (ENSMMMG00000003346) #22	MGMT (ENSMMMG00000003336) #23	ENSMMMG00000003330	ENSMMMG00000003323 #24	PTPRE (ENSMMMG00000003177) #25	CLRN3 (ENSMMMG00000003163) #28	FOXI2 (ENSMMMG00000003153) #29	NPS (ENSMMMG00000003133) #30	INSYN2A (ENSMMMG00000003123)	DOCK1 (ENSMMMG00000003000)	C10orf90 (ENSMMMG00000002952)	ADAM12 (ENSMMMG00000002897)	FANK1 (ENSMMMG00000002858)	DHX32 (ENSMMMG00000002778)	ENSMMMG00000002705	UROS (ENSMMMG00000002640)
Marmotini_b	ANCESTRAL SPECIES	27	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.s	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797
Squirrel	MODERN SPECIES	86	KNDC1 (ENSSTOG00000003325)	ADGRA1 (ENSSTOG00000022466)	CFAP46 (ENSSTOG00000026167)	NKX6-2 (ENSSTOG00000006771)	INPP5A (ENSSTOG00000006754)	PWWP2B (ENSSTOG00000022631)	LRRC27 (ENSSTOG00000016397)	STK32C (ENSSTOG00000005463)	DPYSL4 (ENSSTOG00000004242)	JAKMIP3 (ENSSTOG00000025513)	BNIP3 (ENSSTOG00000012456)	PPP2R2D (ENSSTOG00000012446)	TCERG1L (ENSSTOG00000002199) #18	GLRX3 (ENSSTOG00000016258) #19	C10orf143 (ENSSTOG00000030833) #20	EBF3 (ENSSTOG00000006113) #22	MGMT (ENSSTOG00000034415) #23	PTPRE (ENSSTOG00000005993) #25	CLRN3 (ENSSTOG00000005988) #28	FOXI2 (ENSSTOG00000000818) #29	NPS (ENSSTOG00000033393) #30	INSYN2A (ENSSTOG00000008121)	DOCK1 (ENSSTOG00000008039)	C10orf90 (ENSSTOG00000003990)	ADAM12 (ENSSTOG00000003951)	FANK1 (ENSSTOG00000003931)	DHX32 (ENSSTOG00000019851)	ENSSTOG00000011828	UROS (ENSSTOG00000011820)	MMP21 (ENSSTOG00000011810)	EDRF1 (ENSSTOG00000011796)
Arctic ground squirrel	MODERN SPECIES	481														GLRX3 (ENSUPAG00010019869) #19	C10orf143 (ENSUPAG00010019889) #20	EBF3 (ENSUPAG00010019897) #22	MGMT (ENSUPAG00010019938) #23	ENSUPAG00010019942
Eurasian red squirrel	MODERN SPECIES	13	ADGRA1 (ENSSVLG00005017458)	CFAP46 (ENSSVLG00005017722)	NKX6-2 (ENSSVLG00005018951)	INPP5A (ENSSVLG00005019008)	PWWP2B (ENSSVLG00005019050)	ENSSVLG00005019090	STK32C (ENSSVLG00005019140)	DPYSL4 (ENSSVLG00005019206)	JAKMIP3 (ENSSVLG00005019622)	ENSSVLG00005020231	BNIP3 (ENSSVLG00005020273)	ENSSVLG00005020302	TCERG1L (ENSSVLG00005020392) #18	ENSSVLG00005020513 #19	C10orf143 (ENSSVLG00005020535) #20	EBF3 (ENSSVLG00005020574) #22	MGMT (ENSSVLG00005020626) #23	PTPRE (ENSSVLG00005020703) #25	CLRN3 (ENSSVLG00005020884) #28	FOXI2 (ENSSVLG00005020918) #29	NPS (ENSSVLG00005020954) #30	DOCK1 (ENSSVLG00005021022)	INSYN2A (ENSSVLG00005021779)	C10orf90 (ENSSVLG00005021828)	ADAM12 (ENSSVLG00005021959)	FANK1 (ENSSVLG00005022149)	DHX32 (ENSSVLG00005022286)	ENSSVLG00005022333	UROS (ENSSVLG00005022384)	MMP21 (ENSSVLG00005000191)	EDRF1 (ENSSVLG00005000243)
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Kangaroo rat	MODERN SPECIES	377						Cfap46 (ENSDORG00000023610)	Inpp5a (ENSDORG00000002805)	Pwwp2b (ENSDORG00000011183)	Stk32c (ENSDORG00000000772)	Dpysl4 (ENSDORG00000000765)	Jakmip3 (ENSDORG00000009703)	Bnip3 (ENSDORG00000012511)	Ppp2r2d (ENSDORG00000012510)	Tcerg1l (ENSDORG00000013471) #18	ENSDORG00000014163 #19	Ebf3 (ENSDORG00000012111) #22	Ptpre (ENSDORG00000010146) #25	Clrn3 (ENSDORG00000026991) #28	Nps (ENSDORG00000013294) #30	Dock1 (ENSDORG00000003440)	Insyn2a (ENSDORG00000003447)	ENSDORG00000024720	Adam12 (ENSDORG00000005609)	Fank1 (ENSDORG00000005607)	Dhx32 (ENSDORG00000008006)	Bccip (ENSDORG00000008005)	Uros (ENSDORG00000012151)	Mmp21 (ENSDORG00000012150)	Edrf1 (ENSDORG00000012147)	Tex36 (ENSDORG00000012145)	ENSDORG00000026871
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000236277	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000236277	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Golden Hamster	MODERN SPECIES	617	Kndc1 (ENSMAUG00000002192)	Adgra1 (ENSMAUG00000001774)	ENSMAUG00000001678	Nkx6-2 (ENSMAUG00000004076)	Inpp5a (ENSMAUG00000002979)	Pwwp2b (ENSMAUG00000001368)	Lrrc27 (ENSMAUG00000004835)	Stk32c (ENSMAUG00000001949)	Dpysl4 (ENSMAUG00000005192)	Jakmip3 (ENSMAUG00000005628)	Ppp2r2d (ENSMAUG00000001731)	Mapk1ip1 (ENSMAUG00000001985)	Tcerg1l (ENSMAUG00000004410) #18	Glrx3 (ENSMAUG00000003122) #19	ENSMAUG00000002010	Ebf3 (ENSMAUG00000007279) #22	Mgmt (ENSMAUG00000003180) #23	Mki67 (ENSMAUG00000004207) #24	Ptpre (ENSMAUG00000006895) #25	Clrn3 (ENSMAUG00000003679) #28	Foxi2 (ENSMAUG00000002075) #29	Nps (ENSMAUG00000003085) #30	Insyn2a (ENSMAUG00000004802)	ENSMAUG00000003941	D7Ertd443e (ENSMAUG00000006262)	Adam12 (ENSMAUG00000006532)	Fank1 (ENSMAUG00000009677)	Dhx32 (ENSMAUG00000003238)	Bccip (ENSMAUG00000004747)	Uros (ENSMAUG00000003631)	Mmp21 (ENSMAUG00000003750)
Chinese hamster chok1gshd	MODERN SPECIES	401	ENSCGRG00001022196	ENSCGRG00001016092	Nkx6-2 (ENSCGRG00001016308)	Inpp5a (ENSCGRG00001015561)	Pwwp2b (ENSCGRG00001016752)	Lrrc27 (ENSCGRG00001022907)	Stk32c (ENSCGRG00001016474)	Dpysl4 (ENSCGRG00001015994)	Jakmip3 (ENSCGRG00001000495)	Bnip3 (ENSCGRG00001021974)	Ppp2r2d (ENSCGRG00001021588)	Mapk1ip1 (ENSCGRG00001010991)	Tcerg1l (ENSCGRG00001022062) #18	Glrx3 (ENSCGRG00001015788) #19	ENSCGRG00001015409	Ebf3 (ENSCGRG00001012978) #22	Mgmt (ENSCGRG00001004521) #23	Mki67 (ENSCGRG00001017463) #24	Ptpre (ENSCGRG00001012914) #25	Clrn3 (ENSCGRG00001019690) #28	Foxi2 (ENSCGRG00001007522) #29	Nps (ENSCGRG00001019970) #30	Insyn2a (ENSCGRG00001015996)	Dock1 (ENSCGRG00001021352)	D7Ertd443e (ENSCGRG00001009985)	Adam12 (ENSCGRG00001019498)	Fank1 (ENSCGRG00001019346)	Dhx32 (ENSCGRG00001016739)	Bccip (ENSCGRG00001013505)	Uros (ENSCGRG00001022739)	Mmp21 (ENSCGRG00001021076)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000236277	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Northern American deer mouse	MODERN SPECIES		Nkx6-2 (ENSPEMG00000009524)	Inpp5a (ENSPEMG00000022882)	Pwwp2b (ENSPEMG00000018469)	Lrrc27 (ENSPEMG00000023223)	Stk32c (ENSPEMG00000017281)	Dpysl4 (ENSPEMG00000023587)	Jakmip3 (ENSPEMG00000024203)	ENSPEMG00000030178	Bnip3 (ENSPEMG00000000428)	ENSPEMG00000023056	Mapk1ip1 (ENSPEMG00000025489)	Tcerg1l (ENSPEMG00000023624) #18	Glrx3 (ENSPEMG00000023550) #19	ENSPEMG00000023531	ENSPEMG00000027320	Ebf3 (ENSPEMG00000011117) #22	Mgmt (ENSPEMG00000023565) #23	Ptpre (ENSPEMG00000013794) #25	Clrn3 (ENSPEMG00000029776) #28	Foxi2 (ENSPEMG00000021475) #29	Nps (ENSPEMG00000020990) #30	ENSPEMG00000022297	Insyn2a (ENSPEMG00000024251)	Dock1 (ENSPEMG00000022081)	D7Ertd443e (ENSPEMG00000011783)	Adam12 (ENSPEMG00000020560)	Fank1 (ENSPEMG00000020393)	Dhx32 (ENSPEMG00000020674)	Bccip (ENSPEMG00000020996)	Uros (ENSPEMG00000000385)	Mmp21 (ENSPEMG00000022056)
Prairie vole	MODERN SPECIES	16	ENSMOCG00000012591	Nkx6-2 (ENSMOCG00000011913)	Inpp5a (ENSMOCG00000016229)	Pwwp2b (ENSMOCG00000019001)	Lrrc27 (ENSMOCG00000013783)	Stk32c (ENSMOCG00000004373)	Dpysl4 (ENSMOCG00000018100)	Jakmip3 (ENSMOCG00000015036)	Bnip3 (ENSMOCG00000019955)	Ppp2r2d (ENSMOCG00000022012)	Mapk1ip1 (ENSMOCG00000012555)	Tcerg1l (ENSMOCG00000006531) #18	ENSMOCG00000009116	Glrx3 (ENSMOCG00000012690) #19	ENSMOCG00000016815	Ebf3 (ENSMOCG00000022464) #22	Mgmt (ENSMOCG00000022738) #23	ENSMOCG00000001433	Mki67 (ENSMOCG00000003924) #24	Ptpre (ENSMOCG00000017071) #25	Clrn3 (ENSMOCG00000002635) #28	Foxi2 (ENSMOCG00000021677) #29	Nps (ENSMOCG00000021758) #30	Insyn2a (ENSMOCG00000018294)	Dock1 (ENSMOCG00000015324)	D7Ertd443e (ENSMOCG00000019523)	Adam12 (ENSMOCG00000006212)	Fank1 (ENSMOCG00000004647)	Dhx32 (ENSMOCG00000009862)	Bccip (ENSMOCG00000001214)	Uros (ENSMOCG00000013059)
Murinae	ANCESTRAL SPECIES		ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00960000190811	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Mus	ANCESTRAL SPECIES		ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00960000190811	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00900000143289	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Mus_A	ANCESTRAL SPECIES	1	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00960000190811	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00900000143289	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Mus_B	ANCESTRAL SPECIES		ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00960000190811	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00900000143289	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Mouse	MODERN SPECIES	16	Adgra1 (ENSMUSG00000025475)	Cfap46 (ENSMUSG00000049571)	Nkx6-2 (ENSMUSG00000041309)	Inpp5a (ENSMUSG00000025477)	Pwwp2b (ENSMUSG00000060260)	Lrrc27 (ENSMUSG00000015980)	Stk32c (ENSMUSG00000015981)	Dpysl4 (ENSMUSG00000025478)	Jakmip3 (ENSMUSG00000056856)	Bnip3 (ENSMUSG00000078566)	Ppp2r2d (ENSMUSG00000041769)	Mapk1ip1 (ENSMUSG00000041775)	Tcerg1l (ENSMUSG00000091002) #18	Glrx3 (ENSMUSG00000031068) #19	9430038I01Rik (ENSMUSG00000040139) #20	Ebf3 (ENSMUSG00000010476) #22	Mgmt (ENSMUSG00000054612) #23	Mki67 (ENSMUSG00000031004) #24	Ptpre (ENSMUSG00000041836) #25	Clrn3 (ENSMUSG00000050866) #28	Foxi2 (ENSMUSG00000048377) #29	Nps (ENSMUSG00000073804) #30	Insyn2a (ENSMUSG00000073805)	Dock1 (ENSMUSG00000058325)	D7Ertd443e (ENSMUSG00000030994)	Adam12 (ENSMUSG00000054555)	Fank1 (ENSMUSG00000053111)	Dhx32 (ENSMUSG00000030986)	Bccip (ENSMUSG00000030983)	Uros (ENSMUSG00000030979)	Mmp21 (ENSMUSG00000030981)
Mus_C	ANCESTRAL SPECIES	14	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00730000111340.h	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00960000190811	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00900000143289	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Steppe mouse	MODERN SPECIES	3376	ENSMSIG00000025899	Inpp5a (ENSMSIG00000025815)	Pwwp2b (ENSMSIG00000025796)	Lrrc27 (ENSMSIG00000025749)	Stk32c (ENSMSIG00000025706)	Dpysl4 (ENSMSIG00000025667)	Jakmip3 (ENSMSIG00000025518)	Bnip3 (ENSMSIG00000025477)	Ppp2r2d (ENSMSIG00000025443)	Mapk1ip1 (ENSMSIG00000025440)	ENSMSIG00000025432	Tcerg1l (ENSMSIG00000025406) #18	Glrx3 (ENSMSIG00000025358) #19	9430038I01Rik (ENSMSIG00000025331) #20	ENSMSIG00000025325	Ebf3 (ENSMSIG00000025034) #22	Mgmt (ENSMSIG00000025017) #23	Mki67 (ENSMSIG00000024930) #24	Ptpre (ENSMSIG00000024604) #25	Clrn3 (ENSMSIG00000024584) #28	Foxi2 (ENSMSIG00000024570) #29	Nps (ENSMSIG00000024560) #30	Insyn2a (ENSMSIG00000024536)	Dock1 (ENSMSIG00000024295)	ENSMSIG00000024284	D7Ertd443e (ENSMSIG00000024194)	Adam12 (ENSMSIG00000024107)	Fank1 (ENSMSIG00000024019)	Dhx32 (ENSMSIG00000024001)	Bccip (ENSMSIG00000023985)	Uros (ENSMSIG00000023927)
spretus	MODERN SPECIES	16	Kndc1 (MGP_SPRETEiJ_G0031732)	Adgra1 (MGP_SPRETEiJ_G0031731)	Cfap46 (MGP_SPRETEiJ_G0031730)	Nkx6-2 (MGP_SPRETEiJ_G0031729)	Inpp5a (MGP_SPRETEiJ_G0031728)	Pwwp2b (MGP_SPRETEiJ_G0031727)	Lrrc27 (MGP_SPRETEiJ_G0031726)	Stk32c (MGP_SPRETEiJ_G0031725)	Dpysl4 (MGP_SPRETEiJ_G0031724)	MGP_SPRETEiJ_G0031722	Ppp2r2d (MGP_SPRETEiJ_G0031721)	Mapk1ip1 (MGP_SPRETEiJ_G0031720)	Tcerg1l (MGP_SPRETEiJ_G0031719) #18	Glrx3 (MGP_SPRETEiJ_G0031718) #19	9430038I01Rik (MGP_SPRETEiJ_G0031717) #20	Ebf3 (MGP_SPRETEiJ_G0031716) #22	Mgmt (MGP_SPRETEiJ_G0031715) #23	Ptpre (MGP_SPRETEiJ_G0031714) #25	Clrn3 (MGP_SPRETEiJ_G0031713) #28	Foxi2 (MGP_SPRETEiJ_G0031712) #29	MGP_SPRETEiJ_G0031711	Nps (MGP_SPRETEiJ_G0031710) #30	Insyn2a (MGP_SPRETEiJ_G0031709)	MGP_SPRETEiJ_G0031708	D7Ertd443e (MGP_SPRETEiJ_G0031707)	Adam12 (MGP_SPRETEiJ_G0031706)	Fank1 (MGP_SPRETEiJ_G0031705)	Dhx32 (MGP_SPRETEiJ_G0031704)	Bccip (MGP_SPRETEiJ_G0031703)	Uros (MGP_SPRETEiJ_G0031702)	Mmp21 (MGP_SPRETEiJ_G0031701)
Ryukyu mouse	MODERN SPECIES	16	Adgra1 (MGP_CAROLIEiJ_G0030620)	MGP_CAROLIEiJ_G0030619	Nkx6-2 (MGP_CAROLIEiJ_G0030618)	Inpp5a (MGP_CAROLIEiJ_G0030617)	Pwwp2b (MGP_CAROLIEiJ_G0030616)	MGP_CAROLIEiJ_G0030615	Stk32c (MGP_CAROLIEiJ_G0030614)	Dpysl4 (MGP_CAROLIEiJ_G0030613)	MGP_CAROLIEiJ_G0030612	Bnip3 (MGP_CAROLIEiJ_G0030611)	Ppp2r2d (MGP_CAROLIEiJ_G0030610)	Mapk1ip1 (MGP_CAROLIEiJ_G0030609)	Tcerg1l (MGP_CAROLIEiJ_G0030608) #18	Glrx3 (MGP_CAROLIEiJ_G0030607) #19	MGP_CAROLIEiJ_G0030606 #20	Ebf3 (MGP_CAROLIEiJ_G0030605) #22	Mgmt (MGP_CAROLIEiJ_G0030604) #23	MGP_CAROLIEiJ_G0030603 #24	Ptpre (MGP_CAROLIEiJ_G0030602) #25	Clrn3 (MGP_CAROLIEiJ_G0030601) #28	Foxi2 (MGP_CAROLIEiJ_G0030600) #29	MGP_CAROLIEiJ_G0030599	Nps (MGP_CAROLIEiJ_G0030598) #30	Insyn2a (MGP_CAROLIEiJ_G0030597)	Dock1 (MGP_CAROLIEiJ_G0030596)	MGP_CAROLIEiJ_G0030595	MGP_CAROLIEiJ_G0030594	D7Ertd443e (MGP_CAROLIEiJ_G0030593)	Adam12 (MGP_CAROLIEiJ_G0030592)	Fank1 (MGP_CAROLIEiJ_G0030591)	Dhx32 (MGP_CAROLIEiJ_G0030590)
Shrew mouse	MODERN SPECIES		Adgra1 (MGP_PahariEiJ_G0013825)	Cfap46 (MGP_PahariEiJ_G0013824)	Nkx6-2 (MGP_PahariEiJ_G0013823)	Inpp5a (MGP_PahariEiJ_G0013822)	Pwwp2b (MGP_PahariEiJ_G0013821)	MGP_PahariEiJ_G0013820	Stk32c (MGP_PahariEiJ_G0013819)	Dpysl4 (MGP_PahariEiJ_G0013818)	MGP_PahariEiJ_G0013817	Bnip3 (MGP_PahariEiJ_G0013816)	Ppp2r2d (MGP_PahariEiJ_G0013815)	Mapk1ip1 (MGP_PahariEiJ_G0013814)	Tcerg1l (MGP_PahariEiJ_G0013813) #18	Glrx3 (MGP_PahariEiJ_G0013812) #19	MGP_PahariEiJ_G0013811 #20	Ebf3 (MGP_PahariEiJ_G0013810) #22	Mgmt (MGP_PahariEiJ_G0013809) #23	MGP_PahariEiJ_G0013808 #24	Ptpre (MGP_PahariEiJ_G0013807) #25	Clrn3 (MGP_PahariEiJ_G0013806) #28	Foxi2 (MGP_PahariEiJ_G0013805) #29	MGP_PahariEiJ_G0013804	Nps (MGP_PahariEiJ_G0013803) #30	Insyn2a (MGP_PahariEiJ_G0013802)	Dock1 (MGP_PahariEiJ_G0013801)	D7Ertd443e (MGP_PahariEiJ_G0013800)	Adam12 (MGP_PahariEiJ_G0013799)	Fank1 (MGP_PahariEiJ_G0013798)	Dhx32 (MGP_PahariEiJ_G0013797)	Bccip (MGP_PahariEiJ_G0013796)	MGP_PahariEiJ_G0013795
Rat	MODERN SPECIES		Cfap46 (ENSRNOG00000027374)	Nkx6-2 (ENSRNOG00000017748)	Inpp5a (ENSRNOG00000017635)	Pwwp2b (ENSRNOG00000036649)	Lrrc27 (ENSRNOG00000017538)	Stk32c (ENSRNOG00000006962)	Dpysl4 (ENSRNOG00000027582)	Jakmip3 (ENSRNOG00000027590)	Bnip3 (ENSRNOG00000017243)	Ppp2r2d (ENSRNOG00000016940)	Mapk1ip1 (ENSRNOG00000016935)	Tcerg1l (ENSRNOG00000016737) #18	Glrx3 (ENSRNOG00000016227) #19	C1h10orf143 (ENSRNOG00000050554) #20	ENSRNOG00000065256	Ebf3 (ENSRNOG00000016102) #22	Mgmt (ENSRNOG00000016038) #23	Mki67 (ENSRNOG00000028137) #24	Ptpre (ENSRNOG00000015717) #25	Clrn3 (ENSRNOG00000028288) #28	Foxi2 (ENSRNOG00000018917) #29	Nps (ENSRNOG00000036653) #30	Insyn2a (ENSRNOG00000033881)	LOC100302465 (ENSRNOG00000027542)	Adam12 (ENSRNOG00000018384)	Fank1 (ENSRNOG00000018327)	Dhx32 (ENSRNOG00000018119)	Bccip (ENSRNOG00000018066)	Uros (ENSRNOG00000017810)	Mmp21 (ENSRNOG00000017756)	Edrf1 (ENSRNOG00000017728)
Upper Galilee mountains blind mole rat	MODERN SPECIES	411														Glrx3 (ENSNGAG00000022227) #19	ENSNGAG00000005888	Ebf3 (ENSNGAG00000022578) #22	Mgmt (ENSNGAG00000023006) #23	Ptpre (ENSNGAG00000019630) #25	Clrn3 (ENSNGAG00000022917) #28	Foxi2 (ENSNGAG00000015972) #29	Nps (ENSNGAG00000023481) #30	ENSNGAG00000009122	Insyn2a (ENSNGAG00000010671)
Lesser Egyptian jerboa	MODERN SPECIES	174	Adgra1 (ENSJJAG00000021133)	ENSJJAG00000019509	Nkx6-2 (ENSJJAG00000018842)	Inpp5a (ENSJJAG00000017708)	Pwwp2b (ENSJJAG00000016859)	Lrrc27 (ENSJJAG00000016653)	ENSJJAG00000019198	Stk32c (ENSJJAG00000017030)	Dpysl4 (ENSJJAG00000013066)	Jakmip3 (ENSJJAG00000012161)	Bnip3 (ENSJJAG00000002888)	Ppp2r2d (ENSJJAG00000001485)	Tcerg1l (ENSJJAG00000000675) #18	ENSJJAG00000000334	ENSJJAG00000023423 #19	Ebf3 (ENSJJAG00000023260) #22	Mgmt (ENSJJAG00000023187) #23	Ptpre (ENSJJAG00000022747) #25	Clrn3 (ENSJJAG00000018824) #28
Lagomorpha	ANCESTRAL SPECIES	377														ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23
Rabbit	MODERN SPECIES	527														GLRX3 (ENSOCUG00000013091) #19	C10orf143 (ENSOCUG00000033203) #20	EBF3 (ENSOCUG00000008915) #22	MGMT (ENSOCUG00000017909) #23
Pika	MODERN SPECIES	110																EBF3 (ENSOPRG00000013685) #22
Laurasiatheria	ANCESTRAL SPECIES	14	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Laurasiatheria_a	ANCESTRAL SPECIES	15	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Artiodactyla	ANCESTRAL SPECIES	14	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Suina	ANCESTRAL SPECIES	6	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Pig	MODERN SPECIES	5	ENSSSCG00000010770	ENSSSCG00000056661	ADGRA1 (ENSSSCG00000039199)	CFAP46 (ENSSSCG00000010768)	NKX6-2 (ENSSSCG00000036098)	INPP5A (ENSSSCG00000010765)	PWWP2B (ENSSSCG00000023681)	LRRC27 (ENSSSCG00000010764)	STK32C (ENSSSCG00000010761)	DPYSL4 (ENSSSCG00000010762)	JAKMIP3 (ENSSSCG00000024633)	BNIP3 (ENSSSCG00000024388)	TCERG1L (ENSSSCG00000037698) #18	GLRX3 (ENSSSCG00000010759) #19	C10orf143 (ENSSSCG00000040426) #20	EBF3 (ENSSSCG00000010757) #22	ENSSSCG00000049746	MGMT (ENSSSCG00000010756) #23	ENSSSCG00000026302 #24	PTPRE (ENSSSCG00000010755) #25	CLRN3 (ENSSSCG00000010753) #28	FOXI2 (ENSSSCG00000010752) #29	NPS (ENSSSCG00000053344) #30	INSYN2A (ENSSSCG00000031345)	DOCK1 (ENSSSCG00000035045)	C10orf90 (ENSSSCG00000010747)	ADAM12 (ENSSSCG00000010746)	FANK1 (ENSSSCG00000010745)	DHX32 (ENSSSCG00000010744)	BCCIP (ENSSSCG00000010743)	UROS (ENSSSCG00000010742)
Chacoan peccary	MODERN SPECIES	955						PWWP2B (ENSCWAG00000014700)	LRRC27 (ENSCWAG00000014723)	STK32C (ENSCWAG00000014807)	DPYSL4 (ENSCWAG00000014932)	JAKMIP3 (ENSCWAG00000015132)	BNIP3 (ENSCWAG00000015611)	TCERG1L (ENSCWAG00000015640) #18	GLRX3 (ENSCWAG00000015740) #19	C10orf143 (ENSCWAG00000015773) #20	ENSCWAG00000015800	EBF3 (ENSCWAG00000015830) #22	MGMT (ENSCWAG00000015990) #23	PTPRE (ENSCWAG00000016042) #25	CLRN3 (ENSCWAG00000016340) #28	FOXI2 (ENSCWAG00000016377) #29	NPS (ENSCWAG00000016401) #30	DOCK1 (ENSCWAG00000016450)	INSYN2A (ENSCWAG00000016657)	C10orf90 (ENSCWAG00000016711)	ADAM12 (ENSCWAG00000016814)	FANK1 (ENSCWAG00000016853)	DHX32 (ENSCWAG00000016967)	BCCIP (ENSCWAG00000017003)	UROS (ENSCWAG00000017033)	EDRF1 (ENSCWAG00000017083)	TEX36 (ENSCWAG00000017160)
Artiodactyla_a	ANCESTRAL SPECIES	14	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Camelidae	ANCESTRAL SPECIES	86	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491
Arabian camel	MODERN SPECIES	2	ADGRA1 (ENSCDRG00005002754)	CFAP46 (ENSCDRG00005002787)	NKX6-2 (ENSCDRG00005002826)	INPP5A (ENSCDRG00005002849)	PWWP2B (ENSCDRG00005002919)	ENSCDRG00005002934	STK32C (ENSCDRG00005002957)	DPYSL4 (ENSCDRG00005003012)	JAKMIP3 (ENSCDRG00005003118)	BNIP3 (ENSCDRG00005003317)	ENSCDRG00005003334	ENSCDRG00005003355	TCERG1L (ENSCDRG00005003400) #18	GLRX3 (ENSCDRG00005003562) #19	C10orf143 (ENSCDRG00005003714) #20	EBF3 (ENSCDRG00005003771) #22	MGMT (ENSCDRG00005003964) #23	PTPRE (ENSCDRG00005004037) #25	CLRN3 (ENSCDRG00005004265) #28	FOXI2 (ENSCDRG00005004278) #29	NPS (ENSCDRG00005004297) #30	DOCK1 (ENSCDRG00005004338)	INSYN2A (ENSCDRG00005004466)	C10orf90 (ENSCDRG00005004532)	ADAM12 (ENSCDRG00005004626)	FANK1 (ENSCDRG00005006185)	DHX32 (ENSCDRG00005006268)	BCCIP (ENSCDRG00005006346)	UROS (ENSCDRG00005006451)	EDRF1 (ENSCDRG00005006537)	TEX36 (ENSCDRG00005006718)
Artiodactyla_b	ANCESTRAL SPECIES	13	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Cetacea	ANCESTRAL SPECIES	15	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT01010000228728	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Odontoceti	ANCESTRAL SPECIES	14	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT01010000228728	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Odontoceti_a	ANCESTRAL SPECIES	11	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT01010000228728	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Odontoceti_b	ANCESTRAL SPECIES	14	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT01010000228728	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Monodontidae	ANCESTRAL SPECIES	14	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT01010000228728	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Narwhal	MODERN SPECIES	311	ADGRA1 (ENSMMNG00015014522)	CFAP46 (ENSMMNG00015014497)	NKX6-2 (ENSMMNG00015014478)	INPP5A (ENSMMNG00015014462)	PWWP2B (ENSMMNG00015014447)	ENSMMNG00015014437	STK32C (ENSMMNG00015014425)	DPYSL4 (ENSMMNG00015014400)	JAKMIP3 (ENSMMNG00015014358)	BNIP3 (ENSMMNG00015014341)	PPP2R2D (ENSMMNG00015014307)	ENSMMNG00015014293	TCERG1L (ENSMMNG00015014276) #18	GLRX3 (ENSMMNG00015014249) #19	C10orf143 (ENSMMNG00015014227) #20	EBF3 (ENSMMNG00015014202) #22	ENSMMNG00015014185 #23	ENSMMNG00015014154 #24	PTPRE (ENSMMNG00015014091) #25	CLRN3 (ENSMMNG00015014067) #28	FOXI2 (ENSMMNG00015014054) #29	NPS (ENSMMNG00015014047) #30	INSYN2A (ENSMMNG00015014035)	DOCK1 (ENSMMNG00015013945)	C10orf90 (ENSMMNG00015013894)	ADAM12 (ENSMMNG00015013858)	FANK1 (ENSMMNG00015013830)	DHX32 (ENSMMNG00015013805)	BCCIP (ENSMMNG00015013777)	ENSMMNG00015013747	EDRF1 (ENSMMNG00015013719)
Beluga whale	MODERN SPECIES	65	KNDC1 (ENSDLEG00000009075)	ADGRA1 (ENSDLEG00000009344)	CFAP46 (ENSDLEG00000009376)	NKX6-2 (ENSDLEG00000009425)	INPP5A (ENSDLEG00000009450)	PWWP2B (ENSDLEG00000009513)	ENSDLEG00000009526	STK32C (ENSDLEG00000009552)	DPYSL4 (ENSDLEG00000009576)	JAKMIP3 (ENSDLEG00000009617)	BNIP3 (ENSDLEG00000009706)	PPP2R2D (ENSDLEG00000009738)	TCERG1L (ENSDLEG00000009952) #18	GLRX3 (ENSDLEG00000010019) #19	ENSDLEG00000010080 #20	EBF3 (ENSDLEG00000010101) #22	MGMT (ENSDLEG00000010162) #23	ENSDLEG00000010179 #24	PTPRE (ENSDLEG00000010238) #25	CLRN3 (ENSDLEG00000010291) #28	FOXI2 (ENSDLEG00000010310) #29	DOCK1 (ENSDLEG00000011005)	FAM196A (ENSDLEG00000019456)	ADAM12 (ENSDLEG00000019463)	ENSDLEG00000019506	DHX32 (ENSDLEG00000019517)	BCCIP (ENSDLEG00000019523)	UROS (ENSDLEG00000019535)	EDRF1 (ENSDLEG00000019607)	ENSDLEG00000019627	CTBP2 (ENSDLEG00000019641)
Vaquita	MODERN SPECIES	7	ADGRA1 (ENSPSNG00000013734)	CFAP46 (ENSPSNG00000012590)	NKX6-2 (ENSPSNG00000012461)	INPP5A (ENSPSNG00000012400)	PWWP2B (ENSPSNG00000012352)	ENSPSNG00000012321	STK32C (ENSPSNG00000012184)	DPYSL4 (ENSPSNG00000012114)	JAKMIP3 (ENSPSNG00000009865)	BNIP3 (ENSPSNG00000009412)	PPP2R2D (ENSPSNG00000009366)	TCERG1L (ENSPSNG00000009305) #18	ENSPSNG00000009253	GLRX3 (ENSPSNG00000009239) #19	C10orf143 (ENSPSNG00000009170) #20	EBF3 (ENSPSNG00000009038) #22	MGMT (ENSPSNG00000008978) #23	ENSPSNG00000008949 #24	PTPRE (ENSPSNG00000008721) #25	CLRN3 (ENSPSNG00000008648) #28	FOXI2 (ENSPSNG00000008601) #29	NPS (ENSPSNG00000008571) #30	INSYN2A (ENSPSNG00000008515)	DOCK1 (ENSPSNG00000006308)	C10orf90 (ENSPSNG00000005546)	ADAM12 (ENSPSNG00000005500)	FANK1 (ENSPSNG00000005421)	DHX32 (ENSPSNG00000005385)	BCCIP (ENSPSNG00000005355)	ENSPSNG00000005318	EDRF1 (ENSPSNG00000005270)
Dolphin	MODERN SPECIES	4922															GLRX3 (ENSTTRG00000014011) #19	EBF3 (ENSTTRG00000014010) #22
Sperm whale	MODERN SPECIES	12	ADGRA1 (ENSPCTG00005018343)	ENSPCTG00005018247	ENSPCTG00005018115	NKX6-2 (ENSPCTG00005018073)	INPP5A (ENSPCTG00005017939)	PWWP2B (ENSPCTG00005017862)	ENSPCTG00005017844	STK32C (ENSPCTG00005017636)	DPYSL4 (ENSPCTG00005017498)	JAKMIP3 (ENSPCTG00005014662)	BNIP3 (ENSPCTG00005014507)	PPP2R2D (ENSPCTG00005014368)	TCERG1L (ENSPCTG00005014191) #18	GLRX3 (ENSPCTG00005014117) #19	C10orf143 (ENSPCTG00005014070) #20	EBF3 (ENSPCTG00005014004) #22	MGMT (ENSPCTG00005013913) #23	MKI67 (ENSPCTG00005013837) #24	PTPRE (ENSPCTG00005013394) #25	ENSPCTG00005013336	CLRN3 (ENSPCTG00005013268) #28	FOXI2 (ENSPCTG00005013187) #29	NPS (ENSPCTG00005013108) #30	ENSPCTG00005013009	INSYN2A (ENSPCTG00005012937)	ENSPCTG00005006686	C10orf90 (ENSPCTG00005006168)	ADAM12 (ENSPCTG00005005893)	ENSPCTG00005005820	FANK1 (ENSPCTG00005005751)	DHX32 (ENSPCTG00005005668)
Blue whale	MODERN SPECIES	7	ENSBMSG00010012540	ADGRA1 (ENSBMSG00010012588)	CFAP46 (ENSBMSG00010012679)	NKX6-2 (ENSBMSG00010012788)	INPP5A (ENSBMSG00010012829)	PWWP2B (ENSBMSG00010012889)	ENSBMSG00010012899	STK32C (ENSBMSG00010012924)	DPYSL4 (ENSBMSG00010012951)	JAKMIP3 (ENSBMSG00010013025)	BNIP3 (ENSBMSG00010013153)	PPP2R2D (ENSBMSG00010013169)	TCERG1L (ENSBMSG00010013192) #18	GLRX3 (ENSBMSG00010013218) #19	C10orf143 (ENSBMSG00010013248) #20	EBF3 (ENSBMSG00010013271) #22	MGMT (ENSBMSG00010013292) #23	PTPRE (ENSBMSG00010013338) #25	ENSBMSG00010013407	CLRN3 (ENSBMSG00010013416) #28	FOXI2 (ENSBMSG00010013441) #29	NPS (ENSBMSG00010013450) #30	DOCK1 (ENSBMSG00010013502)	ENSBMSG00010013567	INSYN2A (ENSBMSG00010013574)	C10orf90 (ENSBMSG00010013589)	ADAM12 (ENSBMSG00010013613)	FANK1 (ENSBMSG00010013642)	DHX32 (ENSBMSG00010013653)	BCCIP (ENSBMSG00010013666)	ENSBMSG00010013691
Pecora	ANCESTRAL SPECIES	12	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	917																ENSCHYG00000020664 #22
Yarkand deer	MODERN SPECIES	6	MTG1 (ENSCHYG00000014091)	SPRN (ENSCHYG00000014062)	ENSCHYG00000014027	ENSCHYG00000014004	ENSCHYG00000013910	ENSCHYG00000013872	ENSCHYG00000013675	ENSCHYG00000013635	CYP2E1 (ENSCHYG00000013527)	SYCE1 (ENSCHYG00000013435)	JAKMIP3 (ENSCHYG00000020375)	BNIP3 (ENSCHYG00000020255)	TCERG1L (ENSCHYG00000020121) #18	ENSCHYG00000020068 #19	C10orf143 (ENSCHYG00000020032) #20	EBF3 (ENSCHYG00000019883) #22	MGMT (ENSCHYG00000019691) #23	ENSCHYG00000019405 #24	PTPRE (ENSCHYG00000018913) #25	CLRN3 (ENSCHYG00000018803) #28	FOXI2 (ENSCHYG00000018763) #29	NPS (ENSCHYG00000018729) #30	INSYN2A (ENSCHYG00000018674)	DOCK1 (ENSCHYG00000017579)	C10orf90 (ENSCHYG00000017370)	ADAM12 (ENSCHYG00000016986)	FANK1 (ENSCHYG00000016654)	DHX32 (ENSCHYG00000016539)	BCCIP (ENSCHYG00000016427)	UROS (ENSCHYG00000016089)	EDRF1 (ENSCHYG00000015642)
Percora_a	ANCESTRAL SPECIES	14	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Bovidae	ANCESTRAL SPECIES	24	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Bovinae	ANCESTRAL SPECIES	22	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00440000038430.j.b	ENSGT00940000157227	ENSGT00390000000696
Bos	ANCESTRAL SPECIES	23	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00440000038430.j.b	ENSGT00940000157227	ENSGT00390000000696
Bos_b	ANCESTRAL SPECIES	23	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000162309.l.b	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Hybrid Bos Indicus	MODERN SPECIES	18	ADGRA1 (ENSBIXG00005004243)	ENSBIXG00005024779	ENSBIXG00005024693	NKX6-2 (ENSBIXG00005024654)	INPP5A (ENSBIXG00005024629)	ENSBIXG00005024612	PWWP2B (ENSBIXG00005024592)	LRRC27 (ENSBIXG00005024580)	STK32C (ENSBIXG00005024546)	DPYSL4 (ENSBIXG00005006849)	JAKMIP3 (ENSBIXG00005004174)	BNIP3 (ENSBIXG00005024320)	TCERG1L (ENSBIXG00005024254) #18	GLRX3 (ENSBIXG00005024234) #19	C10orf143 (ENSBIXG00005004129) #20	EBF3 (ENSBIXG00005006678) #22	ENSBIXG00005024056 #23	ENSBIXG00005024025	ENSBIXG00005023966 #24	PTPRE (ENSBIXG00005023896) #25	CLRN3 (ENSBIXG00005004054) #28	FOXI2 (ENSBIXG00005023664) #29	NPS (ENSBIXG00005004046) #30	DOCK1 (ENSBIXG00005006170)	INSYN2A (ENSBIXG00005023556)	C10orf90 (ENSBIXG00005023511)	ADAM12 (ENSBIXG00005023445)	FANK1 (ENSBIXG00005023337)	DHX32 (ENSBIXG00005023271)	BCCIP (ENSBIXG00005023242)	UROS (ENSBIXG00005003948)
Cow	MODERN SPECIES	18	BNIP3 (ENSBTAG00000017804)	ENSBTAG00000054967	INPP5A (ENSBTAG00000009181)	NKX6-2 (ENSBTAG00000054665)	ENSBTAG00000015651	ENSBTAG00000019919	ADGRA1 (ENSBTAG00000005965)	ENSBTAG00000049317	ENSBTAG00000007248	OR12J2 (ENSBTAG00000010461)	OR13A29 (ENSBTAG00000005267)	CYP2E1 (ENSBTAG00000018365)	SYCE1 (ENSBTAG00000035072)	GLRX3 (ENSBTAG00000005027) #19	ENSBTAG00000051402 #20	EBF3 (ENSBTAG00000008272) #22	MGMT (ENSBTAG00000050386) #23	MKI67 (ENSBTAG00000002444) #24	PTPRE (ENSBTAG00000002435) #25	CLRN3 (ENSBTAG00000047054) #28	FOXI2 (ENSBTAG00000006218) #29	NPS (ENSBTAG00000054311) #30	INSYN2A (ENSBTAG00000021015)	DOCK1 (ENSBTAG00000031890)	C26H10orf90 (ENSBTAG00000011587)	ADAM12 (ENSBTAG00000012444)	FANK1 (ENSBTAG00000022917)	DHX32 (ENSBTAG00000005795)	BCCIP (ENSBTAG00000005792)	UROS (ENSBTAG00000005791)	EDRF1 (ENSBTAG00000009439)
Bos_a	ANCESTRAL SPECIES	17	ENSGT00940000158585	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00980000201701	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00440000038430.j.b	ENSGT00940000157227	ENSGT00390000000696
Domestic yak	MODERN SPECIES	17	ADGRA1 (ENSBGRG00000014789)	ENSBGRG00000014069	NKX6-2 (ENSBGRG00000014013)	ENSBGRG00000013970	INPP5A (ENSBGRG00000013323)	PWWP2B (ENSBGRG00000013296)	ENSBGRG00000013267	STK32C (ENSBGRG00000013147)	DPYSL4 (ENSBGRG00000013046)	JAKMIP3 (ENSBGRG00000012854)	BNIP3 (ENSBGRG00000012784)	ENSBGRG00000012763	TCERG1L (ENSBGRG00000012603) #18	GLRX3 (ENSBGRG00000012497) #19	C10orf143 (ENSBGRG00000012383) #20	EBF3 (ENSBGRG00000012066) #22	ENSBGRG00000011844 #23	PTPRE (ENSBGRG00000010693) #25	CLRN3 (ENSBGRG00000010595) #28	FOXI2 (ENSBGRG00000010559) #29	NPS (ENSBGRG00000010509) #30	INSYN2A (ENSBGRG00000010474)	DOCK1 (ENSBGRG00000009636)	ENSBGRG00000009554	ENSBGRG00000009507	ADAM12 (ENSBGRG00000009261)	FANK1 (ENSBGRG00000009041)	DHX32 (ENSBGRG00000008932)	BCCIP (ENSBGRG00000008827)	UROS (ENSBGRG00000008669)	EDRF1 (ENSBGRG00000008073)
Wild yak	MODERN SPECIES	1650																EBF3 (ENSBMUG00000023534) #22	ENSBMUG00000023763 #23
American bison	MODERN SPECIES	3316					CFAP46 (ENSBBBG00000012308)	INPP5A (ENSBBBG00000012234)	ENSBBBG00000012224	ENSBBBG00000012219	STK32C (ENSBBBG00000012214)	DPYSL4 (ENSBBBG00000012159)	JAKMIP3 (ENSBBBG00000012095)	BNIP3 (ENSBBBG00000002270)	TCERG1L (ENSBBBG00000002262) #18	GLRX3 (ENSBBBG00000012049) #19	ENSBBBG00000012037 #20	EBF3 (ENSBBBG00000012002) #22	ENSBBBG00000011695 #23	ENSBBBG00000007445 #24	PTPRE (ENSBBBG00000008730) #25	CLRN3 (ENSBBBG00000002139) #28	FOXI2 (ENSBBBG00000011620) #29	NPS (ENSBBBG00000011609) #30	DOCK1 (ENSBBBG00000002133)	INSYN2A (ENSBBBG00000002111)	C10orf90 (ENSBBBG00000011501)	ADAM12 (ENSBBBG00000011479)	FANK1 (ENSBBBG00000011445)	ENSBBBG00000011431	DHX32 (ENSBBBG00000011428)	BCCIP (ENSBBBG00000011417)	UROS (ENSBBBG00000007119)
Caprinae	ANCESTRAL SPECIES	19	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Goat	MODERN SPECIES	18	KNDC1 (ENSCHIG00000020129)	ADGRA1 (ENSCHIG00000018897)	ENSCHIG00000012050	NKX6-2 (ENSCHIG00000001574)	INPP5A (ENSCHIG00000016158)	PWWP2B (ENSCHIG00000019754)	ENSCHIG00000015848	STK32C (ENSCHIG00000000181)	DPYSL4 (ENSCHIG00000000327)	JAKMIP3 (ENSCHIG00000016531)	BNIP3 (ENSCHIG00000016843)	ENSCHIG00000022599	TCERG1L (ENSCHIG00000017198) #18	GLRX3 (ENSCHIG00000021582) #19	C10orf143 (ENSCHIG00000016753) #20	EBF3 (ENSCHIG00000019232) #22	MGMT (ENSCHIG00000015723) #23	ENSCHIG00000023816 #24	PTPRE (ENSCHIG00000019502) #25	CLRN3 (ENSCHIG00000013085) #28	FOXI2 (ENSCHIG00000010172) #29	NPS (ENSCHIG00000027111) #30	DOCK1 (ENSCHIG00000019621)	INSYN2A (ENSCHIG00000010868)	C10orf90 (ENSCHIG00000018126)	ADAM12 (ENSCHIG00000011552)	FANK1 (ENSCHIG00000015691)	DHX32 (ENSCHIG00000000489)	ENSCHIG00000016594	UROS (ENSCHIG00000022204)	EDRF1 (ENSCHIG00000011117)
Rambouillet Sheep	MODERN SPECIES	14	TUBGCP2 (ENSOARG00020008852)	UTF1 (ENSOARG00020008658)	ENSOARG00020008649	ENSOARG00020008632	ADGRA1 (ENSOARG00020007761)	NKX6-2 (ENSOARG00020007384)	PWWP2B (ENSOARG00020007359)	ENSOARG00020007280	STK32C (ENSOARG00020007135)	DPYSL4 (ENSOARG00020006880)	JAKMIP3 (ENSOARG00020006692)	ENSOARG00020006591	TCERG1L (ENSOARG00020006373) #18	GLRX3 (ENSOARG00020025315) #19	C10orf143 (ENSOARG00020025310) #20	EBF3 (ENSOARG00020025277) #22	ENSOARG00020025247	PTPRE (ENSOARG00020025091) #25	CLRN3 (ENSOARG00020025052) #28	FOXI2 (ENSOARG00020025039) #29	NPS (ENSOARG00020025028) #30	ENSOARG00020024984	DOCK1 (ENSOARG00020024201)	ADAM12 (ENSOARG00020023949)	FANK1 (ENSOARG00020023878)	DHX32 (ENSOARG00020023821)	ENSOARG00020023799	UROS (ENSOARG00020023759)	EDRF1 (ENSOARG00020023473)	TEX36 (ENSOARG00020023414)	CTBP2 (ENSOARG00020023317)
Siberian musk deer	MODERN SPECIES	1161				INPP5A (ENSMMSG00000023299)	NKX6-2 (ENSMMSG00000023329)	PWWP2B (ENSMMSG00000023333)	ENSMMSG00000023338	STK32C (ENSMMSG00000023344)	DPYSL4 (ENSMMSG00000007003)	JAKMIP3 (ENSMMSG00000007336)	BNIP3 (ENSMMSG00000011312)	ENSMMSG00000011334	TCERG1L (ENSMMSG00000011373) #18	GLRX3 (ENSMMSG00000011426) #19	C10orf143 (ENSMMSG00000011451) #20	EBF3 (ENSMMSG00000011478) #22	MGMT (ENSMMSG00000011595) #23	ENSMMSG00000011615 #24	PTPRE (ENSMMSG00000011664) #25	CLRN3 (ENSMMSG00000011863) #28	FOXI2 (ENSMMSG00000011887) #29	NPS (ENSMMSG00000011905) #30	DOCK1 (ENSMMSG00000011948)	INSYN2A (ENSMMSG00000011995)	C10orf90 (ENSMMSG00000012019)	ADAM12 (ENSMMSG00000012083)	ENSMMSG00000012153	FANK1 (ENSMMSG00000012169)	DHX32 (ENSMMSG00000012210)	ENSMMSG00000012243	UROS (ENSMMSG00000012288)
Laurasiatheria_b	ANCESTRAL SPECIES	15	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Carnivora	ANCESTRAL SPECIES	16	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Felidae	ANCESTRAL SPECIES	14	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00990000214258	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Panthera	ANCESTRAL SPECIES	8	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b.d	ENSGT01030000234527.A.a.b.a.b.c	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00990000214258	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.m	ENSGT00390000009853
Panthera_a	ANCESTRAL SPECIES	9	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b.d	ENSGT01030000234527.A.a.b.a.b.c	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00990000214258	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696.m	ENSGT00390000009853
leopard	MODERN SPECIES	99															GLRX3 (ENSPPRG00000001761) #19	EBF3 (ENSPPRG00000001725) #22	MGMT (ENSPPRG00000001583) #23	PTPRE (ENSPPRG00000001519) #25	CLRN3 (ENSPPRG00000001404) #28	FOXI2 (ENSPPRG00000001369) #29	NPS (ENSPPRG00000001364) #30	DOCK1 (ENSPPRG00000001334)	INSYN2A (ENSPPRG00000022432)	ENSPPRG00000022049	ENSPPRG00000021967	ADAM12 (ENSPPRG00000021750)	FANK1 (ENSPPRG00000020283)	DHX32 (ENSPPRG00000019772)	BCCIP (ENSPPRG00000019653)	UROS (ENSPPRG00000019516)	MMP21 (ENSPPRG00000019186)
lion	MODERN SPECIES	11										JAKMIP3 (ENSPLOG00000011546)	BNIP3 (ENSPLOG00000011772)	PPP2R2D (ENSPLOG00000011796)	TCERG1L (ENSPLOG00000011912) #18	GLRX3 (ENSPLOG00000012041) #19	ENSPLOG00000012158	EBF3 (ENSPLOG00000012235) #22	MGMT (ENSPLOG00000012521) #23	ENSPLOG00000012624 #24	PTPRE (ENSPLOG00000012703) #25	CLRN3 (ENSPLOG00000012875) #28	FOXI2 (ENSPLOG00000012910) #29	ENSPLOG00000012975	NPS (ENSPLOG00000013023) #30	DOCK1 (ENSPLOG00000013132)	INSYN2A (ENSPLOG00000013885)	C10orf90 (ENSPLOG00000013967)	ADAM12 (ENSPLOG00000014123)	FANK1 (ENSPLOG00000014351)	DHX32 (ENSPLOG00000014637)	BCCIP (ENSPLOG00000014708)	UROS (ENSPLOG00000014815)
Cat	MODERN SPECIES	242	KNDC1 (ENSFCAG00000011577)	ADGRA1 (ENSFCAG00000040404)	ENSFCAG00000030386	NKX6-2 (ENSFCAG00000040274)	INPP5A (ENSFCAG00000010899)	PWWP2B (ENSFCAG00000006289)	LRRC27 (ENSFCAG00000009391)	STK32C (ENSFCAG00000013794)	DPYSL4 (ENSFCAG00000022134)	JAKMIP3 (ENSFCAG00000000239)	BNIP3 (ENSFCAG00000039164)	PPP2R2D (ENSFCAG00000028978)	TCERG1L (ENSFCAG00000018390) #18	GLRX3 (ENSFCAG00000046087) #19	ENSFCAG00000046481 #20	EBF3 (ENSFCAG00000027202) #22	ENSFCAG00000035983 #23	ENSFCAG00000050995 #24	PTPRE (ENSFCAG00000009676) #25	CLRN3 (ENSFCAG00000037549) #28	FOXI2 (ENSFCAG00000042347) #29	ENSFCAG00000051430	NPS (ENSFCAG00000032950) #30	INSYN2A (ENSFCAG00000007355)	DOCK1 (ENSFCAG00000008372)	C10orf90 (ENSFCAG00000040514)	ADAM12 (ENSFCAG00000000813)	FANK1 (ENSFCAG00000024207)	DHX32 (ENSFCAG00000009555)	BCCIP (ENSFCAG00000024151)	UROS (ENSFCAG00000009550)
Caniformia	ANCESTRAL SPECIES	13	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Canidae	ANCESTRAL SPECIES	16	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Canis_lupus	ANCESTRAL SPECIES	20	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Dingo	MODERN SPECIES	165	ENSCAFG00020019890	ADGRA1 (ENSCAFG00020019880)	ENSCAFG00020019864	ENSCAFG00020019855	NKX6-2 (ENSCAFG00020019853)	INPP5A (ENSCAFG00020019852)	PWWP2B (ENSCAFG00020019847)	LRRC27 (ENSCAFG00020019833)	STK32C (ENSCAFG00020019805)	DPYSL4 (ENSCAFG00020019783)	JAKMIP3 (ENSCAFG00020019776)	BNIP3 (ENSCAFG00020019755)	PPP2R2D (ENSCAFG00020019751)	TCERG1L (ENSCAFG00020019728) #18	GLRX3 (ENSCAFG00020019710) #19	EBF3 (ENSCAFG00020019575) #22	MGMT (ENSCAFG00020019566) #23	ENSCAFG00020019563 #24	PTPRE (ENSCAFG00020019540) #25	CLRN3 (ENSCAFG00020019536) #28	FOXI2 (ENSCAFG00020019530) #29	NPS (ENSCAFG00020019529) #30	INSYN2A (ENSCAFG00020019523)	DOCK1 (ENSCAFG00020015843)	ENSCAFG00020015741	ADAM12 (ENSCAFG00020015691)	FANK1 (ENSCAFG00020015665)	DHX32 (ENSCAFG00020015661)	BCCIP (ENSCAFG00020015652)	UROS (ENSCAFG00020015647)	MMP21 (ENSCAFG00020015646)
Dog	MODERN SPECIES	20	KNDC1 (ENSCAFG00845025074)	ADGRA1 (ENSCAFG00845024923)	ENSCAFG00845024842	ENSCAFG00845024738	NKX6-2 (ENSCAFG00845024682)	PWWP2B (ENSCAFG00845024627)	LRRC27 (ENSCAFG00845024536)	INPP5A (ENSCAFG00845024333)	STK32C (ENSCAFG00845024042)	DPYSL4 (ENSCAFG00845023871)	JAKMIP3 (ENSCAFG00845028823)	BNIP3 (ENSCAFG00845028735)	PPP2R2D (ENSCAFG00845028678)	TCERG1L (ENSCAFG00845028594) #18	GLRX3 (ENSCAFG00845028498) #19	EBF3 (ENSCAFG00845028327) #22	MGMT (ENSCAFG00845028222) #23	ENSCAFG00845028130 #24	PTPRE (ENSCAFG00845027906) #25	CLRN3 (ENSCAFG00845027851) #28	FOXI2 (ENSCAFG00845027825) #29	NPS (ENSCAFG00845027796) #30	INSYN2A (ENSCAFG00845027750)	DOCK1 (ENSCAFG00845027604)	C10orf90 (ENSCAFG00845027244)	ADAM12 (ENSCAFG00845027056)	ENSCAFG00845026942	DHX32 (ENSCAFG00845026856)	BCCIP (ENSCAFG00845026810)	UROS (ENSCAFG00845026709)	MMP21 (ENSCAFG00845026645)
Red fox	MODERN SPECIES	82	VENTX (ENSVVUG00000000795)	ENSVVUG00000000803	ENSVVUG00000000832	ADGRA1 (ENSVVUG00000000861)	ENSVVUG00000000930	ENSVVUG00000001061	INPP5A (ENSVVUG00000001099)	ENSVVUG00000001515	LRRC27 (ENSVVUG00000001533)	STK32C (ENSVVUG00000001568)	DPYSL4 (ENSVVUG00000001783)	JAKMIP3 (ENSVVUG00000001849)	BNIP3 (ENSVVUG00000002173)	PPP2R2D (ENSVVUG00000002189)	GLRX3 (ENSVVUG00000002242) #19	EBF3 (ENSVVUG00000002545) #22	MGMT (ENSVVUG00000005481) #23	ENSVVUG00000005509 #24	PTPRE (ENSVVUG00000005552) #25	CLRN3 (ENSVVUG00000005625) #28	FOXI2 (ENSVVUG00000005629) #29	NPS (ENSVVUG00000005633) #30	DOCK1 (ENSVVUG00000005643)	C10orf90 (ENSVVUG00000005698)	ADAM12 (ENSVVUG00000005741)	FANK1 (ENSVVUG00000005751)	DHX32 (ENSVVUG00000005783)	BCCIP (ENSVVUG00000005796)	UROS (ENSVVUG00000005801)	ENSVVUG00000005832	EDRF1 (ENSVVUG00000005942)
Caniformia_b	ANCESTRAL SPECIES	10	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Mustelinae	ANCESTRAL SPECIES	40	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
American mink	MODERN SPECIES	35	ENSNVIG00000009696	ENSNVIG00000009689	ENSNVIG00000009668	ADGRA1 (ENSNVIG00000009648)	CFAP46 (ENSNVIG00000009518)	INPP5A (ENSNVIG00000009438)	ENSNVIG00000009422	STK32C (ENSNVIG00000009345)	DPYSL4 (ENSNVIG00000009300)	JAKMIP3 (ENSNVIG00000009268)	BNIP3 (ENSNVIG00000009234)	PPP2R2D (ENSNVIG00000009221)	TCERG1L (ENSNVIG00000009195) #18	ENSNVIG00000009183	GLRX3 (ENSNVIG00000009163) #19	EBF3 (ENSNVIG00000009091) #22	MGMT (ENSNVIG00000009056) #23	PTPRE (ENSNVIG00000008962) #25	CLRN3 (ENSNVIG00000008954) #28	FOXI2 (ENSNVIG00000008944) #29	ENSNVIG00000008936	NPS (ENSNVIG00000008930) #30	INSYN2A (ENSNVIG00000008917)	DOCK1 (ENSNVIG00000008864)	C10orf90 (ENSNVIG00000008805)	ADAM12 (ENSNVIG00000008712)	FANK1 (ENSNVIG00000008651)	DHX32 (ENSNVIG00000008638)	ENSNVIG00000008620	UROS (ENSNVIG00000008590)	MMP21 (ENSNVIG00000008553)
Ferret	MODERN SPECIES	193	INPP5A (ENSMPUG00000002237)	PWWP2B (ENSMPUG00000019247)	LRRC27 (ENSMPUG00000002242)	STK32C (ENSMPUG00000002244)	DPYSL4 (ENSMPUG00000002249)	JAKMIP3 (ENSMPUG00000002254)	ENSMPUG00000002319	BNIP3 (ENSMPUG00000002321)	PPP2R2D (ENSMPUG00000002352)	ENSMPUG00000002424	ENSMPUG00000002425	ENSMPUG00000002429 #18	ENSMPUG00000002437	GLRX3 (ENSMPUG00000002441) #19	ENSMPUG00000002446 #20	EBF3 (ENSMPUG00000002449) #22	ENSMPUG00000002465 #23	ENSMPUG00000019250	ENSMPUG00000002471	ENSMPUG00000002475 #24	PTPRE (ENSMPUG00000002492) #25	CLRN3 (ENSMPUG00000002497) #28	ENSMPUG00000002500	FOXI2 (ENSMPUG00000002504) #29	NPS (ENSMPUG00000002509) #30	DOCK1 (ENSMPUG00000002512)	INSYN2A (ENSMPUG00000002522)	ENSMPUG00000002525	C10orf90 (ENSMPUG00000002530)	ADAM12 (ENSMPUG00000002554)	FANK1 (ENSMPUG00000002564)
Ursidae	DUPLICATION
Ursidae	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.e #22
Ursus	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.e #22
American black bear	MODERN SPECIES	5559																ENSUAMG00000019849 #22
Ursidae	ANCESTRAL SPECIES	5	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b.f #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1647																ENSAMEG00000024583 #22
Giant Panda	MODERN SPECIES	16	ENSAMEG00000030823	ENSAMEG00000010458	ENSAMEG00000028224	ENSAMEG00000010467	ENSAMEG00000010522	INPP5A (ENSAMEG00000010595)	PWWP2B (ENSAMEG00000010634)	LRRC27 (ENSAMEG00000010636)	STK32C (ENSAMEG00000010664)	DPYSL4 (ENSAMEG00000010698)	JAKMIP3 (ENSAMEG00000010847)	BNIP3 (ENSAMEG00000010874)	PPP2R2D (ENSAMEG00000010891)	TCERG1L (ENSAMEG00000006147) #18	GLRX3 (ENSAMEG00000003257) #19	ENSAMEG00000003291 #22	MGMT (ENSAMEG00000003370) #23	ENSAMEG00000000203 #24	PTPRE (ENSAMEG00000000206) #25	CLRN3 (ENSAMEG00000000246) #28	FOXI2 (ENSAMEG00000023894) #29	NPS (ENSAMEG00000025718) #30	INSYN2A (ENSAMEG00000007293)	DOCK1 (ENSAMEG00000007297)	ENSAMEG00000030009	ENSAMEG00000007314	ADAM12 (ENSAMEG00000007320)	ENSAMEG00000025962	ENSAMEG00000024389	DHX32 (ENSAMEG00000007401)	ENSAMEG00000026388
Ursus	ANCESTRAL SPECIES	7	ENSGT00390000011408	ENSGT00980000199387	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b.f #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797	ENSGT00390000012491
Polar bear	MODERN SPECIES	92	VENTX (ENSUMAG00000010084)	ENSUMAG00000010081	ENSUMAG00000010071	ENSUMAG00000010068	ENSUMAG00000010030	ENSUMAG00000010012	INPP5A (ENSUMAG00000010008)	LRRC27 (ENSUMAG00000009991)	STK32C (ENSUMAG00000009984)	DPYSL4 (ENSUMAG00000009739)	JAKMIP3 (ENSUMAG00000009685)	BNIP3 (ENSUMAG00000009675)	PPP2R2D (ENSUMAG00000009572)	TCERG1L (ENSUMAG00000009552) #18	GLRX3 (ENSUMAG00000009512) #19	EBF3 (ENSUMAG00000009444) #22	MGMT (ENSUMAG00000009436) #23	PTPRE (ENSUMAG00000009225) #25	CLRN3 (ENSUMAG00000009182) #28	NPS (ENSUMAG00000009175) #30	INSYN2A (ENSUMAG00000009173)	DOCK1 (ENSUMAG00000006567)	C10orf90 (ENSUMAG00000006231)	ADAM12 (ENSUMAG00000005776)	FANK1 (ENSUMAG00000005705)	DHX32 (ENSUMAG00000005702)	BCCIP (ENSUMAG00000005698)	UROS (ENSUMAG00000005692)	EDRF1 (ENSUMAG00000005462)	TEX36 (ENSUMAG00000005429)	ENSUMAG00000005406
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1351																EBF3 (ENSUAMG00000004142) #22	ENSUAMG00000004543 #23
American black bear	MODERN SPECIES	1092																ENSUAMG00000024223 #22
Laurasiatheria_c	ANCESTRAL SPECIES	15	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Equus	ANCESTRAL SPECIES	9	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00950000182864.a.b.b.a.b.a.a.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Horse	MODERN SPECIES		KNDC1 (ENSECAG00000020221)	ADGRA1 (ENSECAG00000000065)	CFAP46 (ENSECAG00000006777)	INPP5A (ENSECAG00000015981)	NKX6-2 (ENSECAG00000029054)	PWWP2B (ENSECAG00000002362)	LRRC27 (ENSECAG00000000671)	STK32C (ENSECAG00000009210)	DPYSL4 (ENSECAG00000017084)	JAKMIP3 (ENSECAG00000015234)	BNIP3 (ENSECAG00000017458)	PPP2R2D (ENSECAG00000024456)	TCERG1L (ENSECAG00000024936) #18	ENSECAG00000047547	GLRX3 (ENSECAG00000000306) #19	EBF3 (ENSECAG00000034734) #22	MGMT (ENSECAG00000026858) #23	ENSECAG00000036105 #24	PTPRE (ENSECAG00000008876) #25	CLRN3 (ENSECAG00000023786) #28	FOXI2 (ENSECAG00000029047) #29	NPS (ENSECAG00000034244) #30	DOCK1 (ENSECAG00000023813)	INSYN2A (ENSECAG00000005053)	C1H10orf90 (ENSECAG00000010056)	ADAM12 (ENSECAG00000012744)	FANK1 (ENSECAG00000006524)	DHX32 (ENSECAG00000014298)	BCCIP (ENSECAG00000012266)	UROS (ENSECAG00000017285)	MMP21 (ENSECAG00000000156)
Donkey	MODERN SPECIES	11	ADGRA1 (ENSEASG00005033598)	CFAP46 (ENSEASG00005015010)	NKX6-2 (ENSEASG00005032203)	INPP5A (ENSEASG00005015002)	PWWP2B (ENSEASG00005014999)	LRRC27 (ENSEASG00005014996)	STK32C (ENSEASG00005014980)	DPYSL4 (ENSEASG00005014971)	JAKMIP3 (ENSEASG00005014963)	BNIP3 (ENSEASG00005014958)	PPP2R2D (ENSEASG00005014954)	ENSEASG00005029486	TCERG1L (ENSEASG00005014950) #18	GLRX3 (ENSEASG00005014940) #19	C10orf143 (ENSEASG00005033308) #20	EBF3 (ENSEASG00005014926) #22	ENSEASG00005014920 #23	ENSEASG00005036754 #24	PTPRE (ENSEASG00005014898) #25	CLRN3 (ENSEASG00005014889) #28	FOXI2 (ENSEASG00005014885) #29	NPS (ENSEASG00005014882) #30	DOCK1 (ENSEASG00005014300)	INSYN2A (ENSEASG00005014880)	C10orf90 (ENSEASG00005014276)	ADAM12 (ENSEASG00005014093)	FANK1 (ENSEASG00005014037)	DHX32 (ENSEASG00005014032)	BCCIP (ENSEASG00005014028)	UROS (ENSEASG00005014025)	MMP21 (ENSEASG00005014020)
Chiroptera	ANCESTRAL SPECIES	6	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Microchiroptera	ANCESTRAL SPECIES	5	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT01030000234750 #20	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Greater horseshoe bat	MODERN SPECIES	7	KNDC1 (ENSRFEG00010009704)	ADGRA1 (ENSRFEG00010005366)	CFAP46 (ENSRFEG00010005557)	NKX6-2 (ENSRFEG00010005830)	INPP5A (ENSRFEG00010005875)	PWWP2B (ENSRFEG00010005938)	LRRC27 (ENSRFEG00010005986)	STK32C (ENSRFEG00010006040)	DPYSL4 (ENSRFEG00010006110)	JAKMIP3 (ENSRFEG00010006261)	BNIP3 (ENSRFEG00010006456)	PPP2R2D (ENSRFEG00010006475)	TCERG1L (ENSRFEG00010006553) #18	GLRX3 (ENSRFEG00010006617) #19	C10orf143 (ENSRFEG00010006663) #20	EBF3 (ENSRFEG00010006695) #22	MGMT (ENSRFEG00010006726) #23	ENSRFEG00010006747	ENSRFEG00010006777 #24	PTPRE (ENSRFEG00010006840) #25	CLRN3 (ENSRFEG00010006914) #28	FOXI2 (ENSRFEG00010006944) #29	NPS (ENSRFEG00010006976) #30	DOCK1 (ENSRFEG00010007054)	INSYN2A (ENSRFEG00010007237)	C10orf90 (ENSRFEG00010007318)	ADAM12 (ENSRFEG00010007460)	FANK1 (ENSRFEG00010007706)	DHX32 (ENSRFEG00010007894)	BCCIP (ENSRFEG00010007976)	UROS (ENSRFEG00010008009)
Microbat	MODERN SPECIES	1192	VENTX (ENSMLUG00000012455)	ENSMLUG00000005313	KNDC1 (ENSMLUG00000005282)	ADGRA1 (ENSMLUG00000005244)	ENSMLUG00000006801	ENSMLUG00000000925	NKX6-2 (ENSMLUG00000023493)	INPP5A (ENSMLUG00000000913)	LRRC27 (ENSMLUG00000014493)	STK32C (ENSMLUG00000012226)	DPYSL4 (ENSMLUG00000012216)	JAKMIP3 (ENSMLUG00000011301)	BNIP3 (ENSMLUG00000001405)	PPP2R2D (ENSMLUG00000025135)	TCERG1L (ENSMLUG00000002932) #18	EBF3 (ENSMLUG00000005478) #22	MGMT (ENSMLUG00000005467) #23
Megabat	MODERN SPECIES	3927																EBF3 (ENSPVAG00000013519) #22
Atlantogenata	ANCESTRAL SPECIES	76	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216.db.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E.a	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797	ENSGT00390000012491
Afrotheria	ANCESTRAL SPECIES	88	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216.db.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E.a	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Afrotheria_a	ANCESTRAL SPECIES	92	ENSGT00390000014419	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216.db.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E.a	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Elephant	MODERN SPECIES	537	ENSLAFG00000029220	ADGRA1 (ENSLAFG00000021395)	ENSLAFG00000012858	ENSLAFG00000022390	NKX6-2 (ENSLAFG00000018008)	INPP5A (ENSLAFG00000018003)	PWWP2B (ENSLAFG00000022528)	LRRC27 (ENSLAFG00000004759)	STK32C (ENSLAFG00000018253)	DPYSL4 (ENSLAFG00000032390)	JAKMIP3 (ENSLAFG00000004221)	BNIP3 (ENSLAFG00000010625)	PPP2R2D (ENSLAFG00000015707)	TCERG1L (ENSLAFG00000018503) #18	GLRX3 (ENSLAFG00000015190) #19	EBF3 (ENSLAFG00000006912) #22	MGMT (ENSLAFG00000022317) #23	ENSLAFG00000027411 #24	PTPRE (ENSLAFG00000008470) #25	CLRN3 (ENSLAFG00000017600) #28	FOXI2 (ENSLAFG00000002801) #29	INSYN2A (ENSLAFG00000003245)	DOCK1 (ENSLAFG00000003237)	ENSLAFG00000011321	ADAM12 (ENSLAFG00000011309)	FANK1 (ENSLAFG00000011303)	DHX32 (ENSLAFG00000013280)	BCCIP (ENSLAFG00000032298)	UROS (ENSLAFG00000013271)	MMP21 (ENSLAFG00000013270)	EDRF1 (ENSLAFG00000013265)
Hyrax	MODERN SPECIES	798																EBF3 (ENSPCAG00000000348) #22
Tenrec	MODERN SPECIES	1070																EBF3 (ENSETEG00000014060) #22
Xenarthra	ANCESTRAL SPECIES	1622																ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23
Sloth	MODERN SPECIES	857																ENSCHOG00000001509 #22
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2271															ENSDNOG00000037463 #22	EBF3 (ENSDNOG00000002588) #22	ENSDNOG00000048245 #23
Armadillo	MODERN SPECIES	2271																ENSDNOG00000037463 #22	EBF3 (ENSDNOG00000002588) #22	ENSDNOG00000048245 #23
Marsupialia	ANCESTRAL SPECIES	38	ENSGT00940000158585.c	ENSGT00910000144159.A.b	ENSGT00940000163757	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a.o #25	ENSGT00940000156570.a.p #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000011408.eb	ENSGT00390000011408.fb	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.B #24	ENSGT00940000156570.a.o #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00940000159140.d
Diprotodontia	ANCESTRAL SPECIES	90	ENSGT00390000011408.eb	ENSGT00390000011408.fb	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23
Diprotodontia_a	ANCESTRAL SPECIES	86	ENSGT00390000011408.eb	ENSGT00390000011408.fb	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23
koala	MODERN SPECIES	342															ENSPCIG00000037270 #19	EBF3 (ENSPCIG00000008452) #22	ENSPCIG00000021045 #23	ENSPCIG00000035725
Common wonbat	MODERN SPECIES	1074	ENSVURG00010010946	ADGRA1 (ENSVURG00010010930)	NKX6-2 (ENSVURG00010010841)	INPP5A (ENSVURG00010010822)	ENSVURG00010010798	ENSVURG00010010783	STK32C (ENSVURG00010010769)	DPYSL4 (ENSVURG00010010752)	JAKMIP3 (ENSVURG00010010734)	BNIP3 (ENSVURG00010010712)	PPP2R2D (ENSVURG00010010684)	TCERG1L (ENSVURG00010010645) #18	ENSVURG00010010635	ENSVURG00010010626	GLRX3 (ENSVURG00010010607) #19	EBF3 (ENSVURG00010010543) #22	ENSVURG00010010439 #23
Wallaby	MODERN SPECIES	1721																EBF3 (ENSMEUG00000010821) #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000027559	ENSSHAG00000029904	ENSSHAG00000027371	ENSSHAG00000003119	ENSSHAG00000000893	NKX6-2 (ENSSHAG00000025952)	INPP5A (ENSSHAG00000001898)	ENSSHAG00000009640	STK32C (ENSSHAG00000008001)	DPYSL4 (ENSSHAG00000007352)	JAKMIP3 (ENSSHAG00000006010)	PPP2R2D (ENSSHAG00000002913)	ENSSHAG00000030744	TCERG1L (ENSSHAG00000031422) #18	GLRX3 (ENSSHAG00000005817) #19	EBF3 (ENSSHAG00000000353) #22	ENSSHAG00000028096 #23	ENSSHAG00000027038 #24	ENSSHAG00000031175	ENSSHAG00000000360 #25	ENSSHAG00000023519 #25	CLRN3 (ENSSHAG00000028413) #28	ENSSHAG00000006952 #29	ENSSHAG00000025114 #30	INSYN2A (ENSSHAG00000026318)	DOCK1 (ENSSHAG00000015107)	ENSSHAG00000029926	ENSSHAG00000013645	ADAM12 (ENSSHAG00000011484)	FANK1 (ENSSHAG00000011252)	DHX32 (ENSSHAG00000010635)
Opossum	DUPLICATION
Opossum	MODERN SPECIES		ENSMODG00000006953 #24	PTPRE (ENSMODG00000006941) #25	ENSMODG00000043197	CLRN3 (ENSMODG00000006911) #28	ENSMODG00000006906 #29	NPS (ENSMODG00000029056) #30	ENSMODG00000036674	ENSMODG00000006903	ENSMODG00000041358	STK32C (ENSMODG00000013531)	ENSMODG00000043721	JAKMIP3 (ENSMODG00000013518)	ENSMODG00000045876	TCERG1L (ENSMODG00000013493) #18	GLRX3 (ENSMODG00000013483) #19	ENSMODG00000016695 #22
Opossum	MODERN SPECIES	353																ENSMODG00000022792 #22	ENSMODG00000046072 #23
Platypus	MODERN SPECIES	14	KNDC1 (ENSOANG00000043430)	ENSOANG00000037554	ENSOANG00000031751	ENSOANG00000030741	ENSOANG00000045525	INPP5A (ENSOANG00000047999)	PWWP2B (ENSOANG00000048527)	STK32C (ENSOANG00000028820)	ENSOANG00000043295	DPYSL4 (ENSOANG00000012014)	JAKMIP3 (ENSOANG00000040987)	BNIP3 (ENSOANG00000047658)	PPP2R2D (ENSOANG00000020812)	TCERG1L (ENSOANG00000028768) #18	GLRX3 (ENSOANG00000044992) #19	EBF3 (ENSOANG00000037915) #22	ENSOANG00000028957 #23	ENSOANG00000031651 ##24	PTPRE (ENSOANG00000046456) #25	CLRN3 (ENSOANG00000042939) #28	ENSOANG00000040902 #30	DOCK1 (ENSOANG00000039339)	ENSOANG00000046973	ENSOANG00000051023	ENSOANG00000013089	ENSOANG00000041965	DHX32 (ENSOANG00000041449)	BCCIP (ENSOANG00000002143)	UROS (ENSOANG00000042305)	MMP21 (ENSOANG00000005237)	EDRF1 (ENSOANG00000014188)
Sauria	ANCESTRAL SPECIES	8	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491
Archelosauria	ANCESTRAL SPECIES	10	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491
Cryptodira	ANCESTRAL SPECIES	6	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a.k #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C.q	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Emydidae	ANCESTRAL SPECIES	6	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a.k #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C.q	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
painted turtle	MODERN SPECIES	727								LRP1B (ENSCPBG00000007349)	ENSCPBG00000007285	ENSCPBG00000007243	ENSCPBG00000007226	NXPH2 (ENSCPBG00000007218)	SPOPL (ENSCPBG00000007203)	HNMT (ENSCPBG00000007188)	GLRX3 (ENSCPBG00000007167) #19	EBF3 (ENSCPBG00000007143) #22	MGMT (ENSCPBG00000007107) #23	ENSCPBG00000007073 ##24	PTPRE (ENSCPBG00000007024) #25	CLRN3 (ENSCPBG00000007005) #28	ENSCPBG00000007001 #29	INSYN2A (ENSCPBG00000006992)	DOCK1 (ENSCPBG00000006956)
Three-toed box turtle	MODERN SPECIES	39	ENSTMTG00000015098	ENSTMTG00000015068	ENSTMTG00000015034	ENSTMTG00000015005	NKX6-2 (ENSTMTG00000014987)	INPP5A (ENSTMTG00000014936)	PWWP2B (ENSTMTG00000014912)	LRRC27 (ENSTMTG00000014898)	STK32C (ENSTMTG00000014863)	DPYSL4 (ENSTMTG00000014557)	JAKMIP3 (ENSTMTG00000014491)	BNIP3 (ENSTMTG00000014470)	PPP2R2D (ENSTMTG00000014455)	TCERG1L (ENSTMTG00000014402) #18	GLRX3 (ENSTMTG00000014369) #19	EBF3 (ENSTMTG00000014291) #22	MGMT (ENSTMTG00000014270) #23	ENSTMTG00000014255	ENSTMTG00000014237 #25	ENSTMTG00000020331 #25	CLRN3 (ENSTMTG00000020325) #28	ENSTMTG00000020323 #29	NPS (ENSTMTG00000020318) #30	INSYN2A (ENSTMTG00000020307)	DOCK1 (ENSTMTG00000020264)	C10orf90 (ENSTMTG00000020251)	ADAM12 (ENSTMTG00000019826)	FANK1 (ENSTMTG00000019738)	BCCIP (ENSTMTG00000019719)	UROS (ENSTMTG00000019712)	EDRF1 (ENSTMTG00000019646)
Testudinidae	ANCESTRAL SPECIES	9	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.A ##24	ENSGT00940000156570.a.l #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C.q	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491
Abingdon island giant tortoise	MODERN SPECIES	87																EBF3 (ENSCABG00000022783) #22	MGMT (ENSCABG00000022786) #23
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005018774	ENSGEVG00005018702	ENSGEVG00005018656	NKX6-2 (ENSGEVG00005018624)	INPP5A (ENSGEVG00005018557)	PWWP2B (ENSGEVG00005018522)	LRRC27 (ENSGEVG00005018494)	STK32C (ENSGEVG00005018456)	DPYSL4 (ENSGEVG00005018161)	JAKMIP3 (ENSGEVG00005017824)	BNIP3 (ENSGEVG00005017778)	PPP2R2D (ENSGEVG00005017762)	TCERG1L (ENSGEVG00005017717) #18	GLRX3 (ENSGEVG00005017697) #19	ENSGEVG00005017678	EBF3 (ENSGEVG00005017519) #22	MGMT (ENSGEVG00005017500) #23	ENSGEVG00005017481 ##24	PTPRE (ENSGEVG00005017413) #25	CLRN3 (ENSGEVG00005017382) #28	ENSGEVG00005017357 #29	NPS (ENSGEVG00005017336) #30	INSYN2A (ENSGEVG00005017297)	DOCK1 (ENSGEVG00005013649)	C10orf90 (ENSGEVG00005012981)	ADAM12 (ENSGEVG00005012611)	FANK1 (ENSGEVG00005012339)	BCCIP (ENSGEVG00005012179)	UROS (ENSGEVG00005012099)	EDRF1 (ENSGEVG00005012029)	TEX36 (ENSGEVG00005011932)
Chinese turtle	MODERN SPECIES	2119	ENSPSIG00000000977	ENSPSIG00000010241	ENSPSIG00000010623	NKX6-2 (ENSPSIG00000010754)	INPP5A (ENSPSIG00000010759)	PWWP2B (ENSPSIG00000000984)	LRRC27 (ENSPSIG00000011645)	STK32C (ENSPSIG00000011894)	DPYSL4 (ENSPSIG00000012836)	JAKMIP3 (ENSPSIG00000015597)	BNIP3 (ENSPSIG00000016160)	PPP2R2D (ENSPSIG00000016439)	TCERG1L (ENSPSIG00000016629) #18	ENSPSIG00000000994	GLRX3 (ENSPSIG00000016674) #19	EBF3 (ENSPSIG00000016691) #22	MGMT (ENSPSIG00000017405) #23
Archosauria	ANCESTRAL SPECIES	7			ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491
Australian saltwater crocodile	MODERN SPECIES	68			ENSCPRG00005007081	ENSCPRG00005007089	NKX6-2 (ENSCPRG00005007090)	INPP5A (ENSCPRG00005007113)	PWWP2B (ENSCPRG00005007131)	LRRC27 (ENSCPRG00005007134)	STK32C (ENSCPRG00005007162)	DPYSL4 (ENSCPRG00005007536)	JAKMIP3 (ENSCPRG00005009443)	BNIP3 (ENSCPRG00005009525)	PPP2R2D (ENSCPRG00005009526)	TCERG1L (ENSCPRG00005009534) #18	GLRX3 (ENSCPRG00005009549) #19	EBF3 (ENSCPRG00005009556) #22	MGMT (ENSCPRG00005009563) #23	ENSCPRG00005009575 ##24	PTPRE (ENSCPRG00005009590) #25	CLRN3 (ENSCPRG00005009600) #28	ENSCPRG00005009606	NPS (ENSCPRG00005009610) #30	DOCK1 (ENSCPRG00005009650)	INSYN2A (ENSCPRG00005009660)	C10orf90 (ENSCPRG00005009670)	ADAM12 (ENSCPRG00005009683)	FANK1 (ENSCPRG00005009698)	DHX32 (ENSCPRG00005009704)	BCCIP (ENSCPRG00005009713)	UROS (ENSCPRG00005009716)	EDRF1 (ENSCPRG00005009723)
Aves	ANCESTRAL SPECIES	6	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
African ostrich	DUPLICATION
African ostrich	MODERN SPECIES	463	ENSSCUG00000007588	ENSSCUG00000007590	ENSSCUG00000007601	INPP5A (ENSSCUG00000007608)	PWWP2B (ENSSCUG00000007616)	LRRC27 (ENSSCUG00000007618)	STK32C (ENSSCUG00000007622)	DPYSL4 (ENSSCUG00000007637)	JAKMIP3 (ENSSCUG00000007646)	BNIP3 (ENSSCUG00000007653)	PPP2R2D (ENSSCUG00000007655)	ENSSCUG00000007658	TCERG1L (ENSSCUG00000007664) #18	GLRX3 (ENSSCUG00000007671) #19	ENSSCUG00000007676 #22	ENSSCUG00000007680 #22	MGMT (ENSSCUG00000007684) #23	ENSSCUG00000007692 ##24	PTPRE (ENSSCUG00000007735) #25	CLRN3 (ENSSCUG00000007769) #28	NPS (ENSSCUG00000007770) #30	DOCK1 (ENSSCUG00000007775)	C10orf90 (ENSSCUG00000007778)	ADAM12 (ENSSCUG00000007780)	DHX32 (ENSSCUG00000007786)	BCCIP (ENSSCUG00000007788)	UROS (ENSSCUG00000007791)	ENSSCUG00000007792	ENSSCUG00000007793	ENSSCUG00000007795	ZRANB1 (ENSSCUG00000007796)
African ostrich	MODERN SPECIES	463	TCTN3 (ENSSCUG00000007583)	ENSSCUG00000007588	ENSSCUG00000007590	ENSSCUG00000007601	INPP5A (ENSSCUG00000007608)	PWWP2B (ENSSCUG00000007616)	LRRC27 (ENSSCUG00000007618)	STK32C (ENSSCUG00000007622)	DPYSL4 (ENSSCUG00000007637)	JAKMIP3 (ENSSCUG00000007646)	BNIP3 (ENSSCUG00000007653)	PPP2R2D (ENSSCUG00000007655)	ENSSCUG00000007658	TCERG1L (ENSSCUG00000007664) #18	GLRX3 (ENSSCUG00000007671) #19	ENSSCUG00000007676 #22	ENSSCUG00000007680 #22	MGMT (ENSSCUG00000007684) #23	ENSSCUG00000007692 ##24	PTPRE (ENSSCUG00000007735) #25	CLRN3 (ENSSCUG00000007769) #28	NPS (ENSSCUG00000007770) #30	DOCK1 (ENSSCUG00000007775)	C10orf90 (ENSSCUG00000007778)	ADAM12 (ENSSCUG00000007780)	DHX32 (ENSSCUG00000007786)	BCCIP (ENSSCUG00000007788)	UROS (ENSSCUG00000007791)	ENSSCUG00000007792	ENSSCUG00000007793	ENSSCUG00000007795
Neognathae	ANCESTRAL SPECIES	7	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Galloanserae	ANCESTRAL SPECIES	6	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Phasianidae	ANCESTRAL SPECIES	6			ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430	ENSGT00940000158045
Phasianidae_b	ANCESTRAL SPECIES	6			ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430	ENSGT00940000158045
Chicken	MODERN SPECIES	35			ALDH18A1 (ENSGALG00010001692)	TCTN3 (ENSGALG00010001661)	OPNVA (ENSGALG00010001616)	NKX6-2 (ENSGALG00010001577)	INPP5A (ENSGALG00010001567)	PWWP2B (ENSGALG00010001547)	STK32C (ENSGALG00010001527)	DPYSL4 (ENSGALG00010001506)	JAKMIP3 (ENSGALG00010001480)	BNIP3 (ENSGALG00010001382)	PPP2R2D (ENSGALG00010001369)	TCERG1L (ENSGALG00010001358) #18	GLRX3 (ENSGALG00010001353) #19	EBF3 (ENSGALG00010001334) #22	MGMT (ENSGALG00010001308) #23	ENSGALG00010002750 ##24	PTPRE (ENSGALG00010002712) #25	CLRN3 (ENSGALG00010002617) #28	NPS (ENSGALG00010002611) #30	INSYN2A (ENSGALG00010002603)	DOCK1 (ENSGALG00010002587)	ENSGALG00010003206	ENSGALG00010002582	ADAM12 (ENSGALG00010002570)	DHX32 (ENSGALG00010002497)	BCCIP (ENSGALG00010002487)	UROS (ENSGALG00010002466)	EDRF1 (ENSGALG00010002445)	TEX36 (ENSGALG00010002426)
Turkey	MODERN SPECIES	28															ENSMGAG00000011826 #23	ENSMGAG00000016563 #22	GLRX3 (ENSMGAG00000012648) #19	ENSMGAG00000011844	ENSMGAG00000011837	ENSMGAG00000019998	JAKMIP3 (ENSMGAG00000011861)	ENSMGAG00000011869	ENSMGAG00000011859	ENSMGAG00000011899	ENSMGAG00000015341	ENSMGAG00000011907	ENSMGAG00000011912	ENSMGAG00000011914	ENSMGAG00000011290	ENSMGAG00000015338	ENSMGAG00000011298
Japanese quail	MODERN SPECIES	24			ALDH18A1 (ENSCJPG00005004248)	ENSCJPG00005004209	ENSCJPG00005004208	NKX6-2 (ENSCJPG00005004206)	INPP5A (ENSCJPG00005004193)	PWWP2B (ENSCJPG00005004191)	STK32C (ENSCJPG00005004188)	DPYSL4 (ENSCJPG00005001567)	JAKMIP3 (ENSCJPG00005001465)	ENSCJPG00005001397	PPP2R2D (ENSCJPG00005001393)	TCERG1L (ENSCJPG00005001381) #18	GLRX3 (ENSCJPG00005001349) #19	EBF3 (ENSCJPG00005001333) #22	MGMT (ENSCJPG00005001320) #23	ENSCJPG00005001294 ##24	PTPRE (ENSCJPG00005001286) #25	CLRN3 (ENSCJPG00005001282) #28	NPS (ENSCJPG00005001270) #30	INSYN2A (ENSCJPG00005001268)	DOCK1 (ENSCJPG00005001240)	C10orf90 (ENSCJPG00005001219)	ADAM12 (ENSCJPG00005001198)	DHX32 (ENSCJPG00005001188)	BCCIP (ENSCJPG00005001184)	UROS (ENSCJPG00005001169)	EDRF1 (ENSCJPG00005001118)	TEX36 (ENSCJPG00005001093)	CTBP2 (ENSCJPG00005001082)
Anatidae	ANCESTRAL SPECIES	4	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Pink-footed goose	MODERN SPECIES	74						PWWP2B (ENSABRG00000005286)	LRRC27 (ENSABRG00000005292)	STK32C (ENSABRG00000005299)	DPYSL4 (ENSABRG00000005424)	JAKMIP3 (ENSABRG00000005480)	BNIP3 (ENSABRG00000005764)	PPP2R2D (ENSABRG00000005773)	TCERG1L (ENSABRG00000005804) #18	GLRX3 (ENSABRG00000005859) #19	ENSABRG00000005867	EBF3 (ENSABRG00000005880) #22	MGMT (ENSABRG00000005930) #23	ENSABRG00000005981 ##24	PTPRE (ENSABRG00000006050) #25	CLRN3 (ENSABRG00000006071) #28	NPS (ENSABRG00000006088) #30	DOCK1 (ENSABRG00000006103)	INSYN2A (ENSABRG00000006160)	C10orf90 (ENSABRG00000006215)	ADAM12 (ENSABRG00000006234)	DHX32 (ENSABRG00000006292)	BCCIP (ENSABRG00000006379)	UROS (ENSABRG00000006392)	EDRF1 (ENSABRG00000006414)	TEX36 (ENSABRG00000006456)	CTBP2 (ENSABRG00000006461)
Duck	DUPLICATION
Duck	MODERN SPECIES	24	ALDH18A1 (ENSAPLG00000006363)	TCTN3 (ENSAPLG00000006229)	ENSAPLG00000006027	ENSAPLG00000005542	INPP5A (ENSAPLG00000005286)	PWWP2B (ENSAPLG00000005281)	LRRC27 (ENSAPLG00000023192)	ENSAPLG00000018848	STK32C (ENSAPLG00000004989)	DPYSL4 (ENSAPLG00000003668)	JAKMIP3 (ENSAPLG00000003318)	BNIP3 (ENSAPLG00000005950)	PPP2R2D (ENSAPLG00000006225)	TCERG1L (ENSAPLG00000012399) #18	GLRX3 (ENSAPLG00000012790) #19	ENSAPLG00000012647 #22	MGMT (ENSAPLG00000030688) #23	PTPRE (ENSAPLG00000009861) #25	CLRN3 (ENSAPLG00000023018) #28	FOXI2 (ENSAPLG00000027337) #29	NPS (ENSAPLG00000029354) #30	INSYN2A (ENSAPLG00000017772)	DOCK1 (ENSAPLG00000010685)	C10orf90 (ENSAPLG00000010978)	ADAM12 (ENSAPLG00000011037)	DHX32 (ENSAPLG00000012133)	BCCIP (ENSAPLG00000012566)	UROS (ENSAPLG00000012701)	EDRF1 (ENSAPLG00000012708)	TEX36 (ENSAPLG00000013143)	CTBP2 (ENSAPLG00000014447)
Duck	DUPLICATION
Duck	MODERN SPECIES	185																ENSAPLG00000022127 #22
Duck	MODERN SPECIES	444																ENSAPLG00000025040 #22
Duck	MODERN SPECIES	3765																ENSAPLG00000022469 #22
Neognathae_b	ANCESTRAL SPECIES	8	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Passeriformes	ANCESTRAL SPECIES	10	ENSGT00550000074897	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000170313	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00950000183683	ENSGT00940000154430	ENSGT00940000158045
Great tit	MODERN SPECIES	26	ENSPMJG00000006130	NKX6-2 (ENSPMJG00000006128)	INPP5A (ENSPMJG00000006120)	ENSPMJG00000006106	STK32C (ENSPMJG00000006041)	DPYSL4 (ENSPMJG00000006037)	JAKMIP3 (ENSPMJG00000006028)	BNIP3 (ENSPMJG00000006026)	ENSPMJG00000006025	ENSPMJG00000006022	GLRX3 (ENSPMJG00000006006) #19	ENSPMJG00000005996	ENSPMJG00000005989	TCERG1L (ENSPMJG00000005986) #18	ENSPMJG00000005982	EBF3 (ENSPMJG00000005976) #22	MGMT (ENSPMJG00000005964) #23	PTPRE (ENSPMJG00000005940) #25	CLRN3 (ENSPMJG00000005939) #28	ENSPMJG00000005938	INSYN2A (ENSPMJG00000005937)	DOCK1 (ENSPMJG00000005930)	C10orf90 (ENSPMJG00000005922)	ADAM12 (ENSPMJG00000005918)	DHX32 (ENSPMJG00000005913)	BCCIP (ENSPMJG00000005912)	UROS (ENSPMJG00000005911)	EDRF1 (ENSPMJG00000005907)	ENSPMJG00000005905	CTBP2 (ENSPMJG00000005884)	ZRANB1 (ENSPMJG00000005856)
Passeriformes_d	ANCESTRAL SPECIES	7	ENSGT00550000074897	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000170313	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00950000183683	ENSGT00940000154430	ENSGT00940000158045
Flycatcher	MODERN SPECIES	25	ENSFALG00000027003	ENSFALG00000001323	NKX6-2 (ENSFALG00000001316)	INPP5A (ENSFALG00000001313)	ENSFALG00000022932	STK32C (ENSFALG00000001306)	DPYSL4 (ENSFALG00000027125)	ENSFALG00000001278	JAKMIP3 (ENSFALG00000001258)	ENSFALG00000023307	BNIP3 (ENSFALG00000001247)	PPP2R2D (ENSFALG00000001234)	ENSFALG00000023916	TCERG1L (ENSFALG00000027291) #18	GLRX3 (ENSFALG00000001218) #19	EBF3 (ENSFALG00000001212) #22	MGMT (ENSFALG00000001209) #23	ENSFALG00000026486	ENSFALG00000023643	ENSFALG00000001204 ##24	PTPRE (ENSFALG00000001201) #25	CLRN3 (ENSFALG00000023614) #28	ENSFALG00000014812	ENSFALG00000023045	INSYN2A (ENSFALG00000001196)	DOCK1 (ENSFALG00000001117)	C10orf90 (ENSFALG00000001074)	ADAM12 (ENSFALG00000001070)	DHX32 (ENSFALG00000001048)	BCCIP (ENSFALG00000001029)	UROS (ENSFALG00000001024)
Passeriformes_g	ANCESTRAL SPECIES	8	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00940000160573.a	ENSGT00940000160573.b	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000170313	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00950000183683	ENSGT00940000154430	ENSGT00940000158045
Passeroidea	ANCESTRAL SPECIES	7	ENSGT00550000074897	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00940000160573.a	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000170313	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00950000183683	ENSGT00940000154430	ENSGT00940000158045
Zebra finch	MODERN SPECIES	28	ENSTGUG00000029017	ENSTGUG00000022770	ENSTGUG00000027640	ENSTGUG00000021176	ENSTGUG00000025290	ENSTGUG00000011634 #18	ENSTGUG00000020450	ENSTGUG00000011674	ENSTGUG00000011662	ENSTGUG00000011657	ENSTGUG00000011644	BNIP3 (ENSTGUG00000022111)	ENSTGUG00000011637	ENSTGUG00000024585 #18	GLRX3 (ENSTGUG00000011623) #19	EBF3 (ENSTGUG00000011600) #22	MGMT (ENSTGUG00000023939) #23	ENSTGUG00000021193 ##24	PTPRE (ENSTGUG00000011558) #25	CLRN3 (ENSTGUG00000011555) #28	ENSTGUG00000011554	INSYN2A (ENSTGUG00000011540)	DOCK1 (ENSTGUG00000011514)	C10orf90 (ENSTGUG00000024288)	ADAM12 (ENSTGUG00000011498)	ENSTGUG00000011493	ENSTGUG00000011491	BCCIP (ENSTGUG00000011485)	UROS (ENSTGUG00000011481)	EDRF1 (ENSTGUG00000011472)	ENSTGUG00000016414
Common canary	MODERN SPECIES	7	TCTN3 (ENSSCAG00000009979)	ENSSCAG00000010010	ENSSCAG00000010025	NKX6-2 (ENSSCAG00000010038)	INPP5A (ENSSCAG00000010070)	ENSSCAG00000010141	STK32C (ENSSCAG00000010150)	DPYSL4 (ENSSCAG00000010192)	JAKMIP3 (ENSSCAG00000010331)	BNIP3 (ENSSCAG00000010352)	PPP2R2D (ENSSCAG00000010356)	ENSSCAG00000010361	TCERG1L (ENSSCAG00000010367) #18	ENSSCAG00000010378	GLRX3 (ENSSCAG00000010380) #19	EBF3 (ENSSCAG00000010428) #22	MGMT (ENSSCAG00000010591) #23	ENSSCAG00000010598	ENSSCAG00000010606 ##24	PTPRE (ENSSCAG00000010632) #25	CLRN3 (ENSSCAG00000010680) #28	ENSSCAG00000010686	ENSSCAG00000010691	C10orf90 (ENSSCAG00000010706)	DOCK1 (ENSSCAG00000011158)	INSYN2A (ENSSCAG00000013261)	ADAM12 (ENSSCAG00000013286)	DHX32 (ENSSCAG00000013331)	BCCIP (ENSSCAG00000013344)	UROS (ENSSCAG00000013356)	EDRF1 (ENSSCAG00000013392)
Medium ground finch	MODERN SPECIES	72																EBF3 (ENSGFOG00000006630) #22	MGMT (ENSGFOG00000006627) #23	ENSGFOG00000006615 ##24	PTPRE (ENSGFOG00000006603) #25	CLRN3 (ENSGFOG00000006590) #28	ENSGFOG00000006582	DOCK1 (ENSGFOG00000006527)	C10orf90 (ENSGFOG00000006514)	ADAM12 (ENSGFOG00000006402)	DHX32 (ENSGFOG00000006380)	BCCIP (ENSGFOG00000006370)	UROS (ENSGFOG00000006355)	EDRF1 (ENSGFOG00000006339)	CTBP2 (ENSGFOG00000006333)	ZRANB1 (ENSGFOG00000006329)	ABRAXAS2 (ENSGFOG00000013846)
Neognathae_c	ANCESTRAL SPECIES	8	ENSGT00500000044903	ENSGT00570000079101.a.a	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Kakapo	MODERN SPECIES	22	ALDH18A1 (ENSSHBG00005000335)	TCTN3 (ENSSHBG00005000332)	ENSSHBG00005000327	ENSSHBG00005007953	NKX6-2 (ENSSHBG00005007927)	INPP5A (ENSSHBG00005007898)	PWWP2B (ENSSHBG00005007882)	ENSSHBG00005007862	STK32C (ENSSHBG00005007817)	DPYSL4 (ENSSHBG00005007798)	JAKMIP3 (ENSSHBG00005007771)	BNIP3 (ENSSHBG00005007749)	PPP2R2D (ENSSHBG00005007723)	TCERG1L (ENSSHBG00005007703) #18	GLRX3 (ENSSHBG00005007676) #19	EBF3 (ENSSHBG00005007619) #22	MGMT (ENSSHBG00005007589) #23	ENSSHBG00005007566 ##24	ENSSHBG00005007545 #25	ENSSHBG00005007521 #25	CLRN3 (ENSSHBG00005007508) #28	FOXI2 (ENSSHBG00005007503) #29	NPS (ENSSHBG00005007496) #30	INSYN2A (ENSSHBG00005007484)	DOCK1 (ENSSHBG00005005385)	C10orf90 (ENSSHBG00005005082)	ADAM12 (ENSSHBG00005004698)	ENSSHBG00005004575	ENSSHBG00005004565	BCCIP (ENSSHBG00005004551)	UROS (ENSSHBG00005004544)
Golden eagle	MODERN SPECIES	2	ALDH18A1 (ENSACCG00020005309)	TCTN3 (ENSACCG00020005331)	ENSACCG00020005371	ENSACCG00020005416	NKX6-2 (ENSACCG00020005430)	INPP5A (ENSACCG00020005453)	PWWP2B (ENSACCG00020005473)	LRRC27 (ENSACCG00020005494)	STK32C (ENSACCG00020005571)	DPYSL4 (ENSACCG00020005629)	JAKMIP3 (ENSACCG00020005746)	BNIP3 (ENSACCG00020005794)	PPP2R2D (ENSACCG00020005812)	TCERG1L (ENSACCG00020005831) #18	GLRX3 (ENSACCG00020005849) #19	EBF3 (ENSACCG00020005883) #22	MGMT (ENSACCG00020005905) #23	PTPRE (ENSACCG00020005933) #25	CLRN3 (ENSACCG00020005951) #28	FOXI2 (ENSACCG00020005964) #29	NPS (ENSACCG00020005979) #30	DOCK1 (ENSACCG00020006016)	INSYN2A (ENSACCG00020006055)	C10orf90 (ENSACCG00020006070)	ADAM12 (ENSACCG00020006113)	ENSACCG00020006158	ENSACCG00020006168	BCCIP (ENSACCG00020006208)	UROS (ENSACCG00020006244)	EDRF1 (ENSACCG00020006265)	TEX36 (ENSACCG00020006300)
Lepidosauria	ANCESTRAL SPECIES	8	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.A ##24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
tuatara	MODERN SPECIES	1093															GLRX3 (ENSSPUG00000014414) #19	EBF3 (ENSSPUG00000014385) #22	MGMT (ENSSPUG00000014367) #23
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.A ##24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Laterata	ANCESTRAL SPECIES		ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.A ##24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00400000024769 #30	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00940000157227	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797
Argentine black and white tegu	MODERN SPECIES	58														ENSSMRG00000005305	GLRX3 (ENSSMRG00000005299) #19	EBF3 (ENSSMRG00000005270) #22	ENSSMRG00000005262	MGMT (ENSSMRG00000005256) #23	ENSSMRG00000005235 ##24	PTPRE (ENSSMRG00000005213) #25	CLRN3 (ENSSMRG00000005207) #28	ENSSMRG00000005195	ENSSMRG00000005191 #29	NPS (ENSSMRG00000005186) #30	INSYN2A (ENSSMRG00000005178)	DOCK1 (ENSSMRG00000005128)	C10orf90 (ENSSMRG00000005097)	ADAM12 (ENSSMRG00000005049)	FANK1 (ENSSMRG00000005028)	BCCIP (ENSSMRG00000005023)	UROS (ENSSMRG00000005003)
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000005259	ENSPMRG00000005267	NKX6-2 (ENSPMRG00000005270)	INPP5A (ENSPMRG00000005278)	ENSPMRG00000005301	ENSPMRG00000005307	PWWP2B (ENSPMRG00000005312)	LRRC27 (ENSPMRG00000005316)	STK32C (ENSPMRG00000005324)	DPYSL4 (ENSPMRG00000005351)	ENSPMRG00000005434	BNIP3 (ENSPMRG00000005632)	PPP2R2D (ENSPMRG00000005644)	TCERG1L (ENSPMRG00000005659) #18	GLRX3 (ENSPMRG00000005668) #19	EBF3 (ENSPMRG00000005686) #22	MGMT (ENSPMRG00000005719) #23	ENSPMRG00000005729	ENSPMRG00000005736	ENSPMRG00000005744 ##24	PTPRE (ENSPMRG00000005760) #25	CLRN3 (ENSPMRG00000005779) #28	ENSPMRG00000005790 #29	DOCK1 (ENSPMRG00000005984)	INSYN2A (ENSPMRG00000005741)	C10orf90 (ENSPMRG00000005758)	ADAM12 (ENSPMRG00000005786)	FANK1 (ENSPMRG00000005824)	DHX32 (ENSPMRG00000005833)	BCCIP (ENSPMRG00000005844)	UROS (ENSPMRG00000005850)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000160175.b	ENSGT00940000164278	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b #22	ENSGT00390000015799 #23	ENSGT00940000154352.A ##24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Lizard	MODERN SPECIES	2	INPP5A (ENSACAG00000005748)	PWWP2B (ENSACAG00000007567)	ENSACAG00000007576	STK32C (ENSACAG00000007586)	DPYSL4 (ENSACAG00000007703)	JAKMIP3 (ENSACAG00000007932)	BNIP3 (ENSACAG00000008046)	PPP2R2D (ENSACAG00000008068)	ENSACAG00000045209	TCERG1L (ENSACAG00000008136) #18	ENSACAG00000034797	ENSACAG00000042148	ENSACAG00000035655	GLRX3 (ENSACAG00000015736) #19	ENSACAG00000035596	EBF3 (ENSACAG00000008590) #22	ENSACAG00000044359	MGMT (ENSACAG00000008585) #23	ENSACAG00000040796	ENSACAG00000020986 ##24	ENSACAG00000007662	PTPRE (ENSACAG00000007467) #25	CLRN3 (ENSACAG00000007466) #28	ENSACAG00000042718 #29	NPS (ENSACAG00000039369) #30	ENSACAG00000038014	INSYN2A (ENSACAG00000007298)	DOCK1 (ENSACAG00000007299)	ENSACAG00000007157	ENSACAG00000040780	ENSACAG00000000498
Elapidae	DUPLICATION
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.t.a #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.t.a #22
Blue-lipped sea krait	MODERN SPECIES	5539																ENSLLTG00000006293 #22
Indian cobra	MODERN SPECIES	3	ENSNNAG00000018247	ADGRA1 (ENSNNAG00000018253)	ENSNNAG00000018261	ENSNNAG00000018284	NKX6-2 (ENSNNAG00000018356)	INPP5A (ENSNNAG00000018361)	PWWP2B (ENSNNAG00000018369)	LRRC27 (ENSNNAG00000018373)	STK32C (ENSNNAG00000018377)	DPYSL4 (ENSNNAG00000018387)	JAKMIP3 (ENSNNAG00000018405)	BNIP3 (ENSNNAG00000018415)	PPP2R2D (ENSNNAG00000018421)	TCERG1L (ENSNNAG00000018427) #18	GLRX3 (ENSNNAG00000018441) #19	EBF3 (ENSNNAG00000018447) #22	MGMT (ENSNNAG00000018454) #23	ENSNNAG00000018458	ENSNNAG00000018459 ##24	PTPRE (ENSNNAG00000018466) #25	CLRN3 (ENSNNAG00000018476) #28	ENSNNAG00000018479 #29	ENSNNAG00000003028	DOCK1 (ENSNNAG00000003118)	INSYN2A (ENSNNAG00000003160)	ENSNNAG00000003178	C10orf90 (ENSNNAG00000003185)	ADAM12 (ENSNNAG00000003205)	FANK1 (ENSNNAG00000003240)	BCCIP (ENSNNAG00000003261)	UROS (ENSNNAG00000003279)
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.t.b #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00950000182859.A.b.t.b #22
Blue-lipped sea krait	MODERN SPECIES	9988																ENSLLTG00000012846 #22
Elapidae	ANCESTRAL SPECIES	4	ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b.u #22	ENSGT00390000015799 #23	ENSGT00940000154352.A ##24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00990000209592	ENSGT00940000154974	ENSGT00530000063787.B	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491
Elapidae_a	ANCESTRAL SPECIES		ENSGT00390000011408	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b.u #22	ENSGT00390000015799 #23	ENSGT00940000154352.A ##24	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00990000209592	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000160175.b	ENSGT00570000079216	ENSGT01030000234549.a.b	ENSGT00940000161547	ENSGT00390000015226.d	ENSGT00390000013127.a.s	ENSGT00940000160735	ENSGT00390000007203	ENSGT00940000160573	ENSGT01030000234527.A.a.b.a.b	ENSGT00940000153713.E	ENSGT00390000013415.a.a	ENSGT00950000182864.a.a	ENSGT00940000160593 #18	ENSGT00550000075030 #19	ENSGT00950000182859.A.b.u #22	ENSGT00390000015799 #23	ENSGT00940000156570.a #25	ENSGT00850000132319.b #28	ENSGT00940000161176 #29	ENSGT00990000209592	ENSGT00530000063787.B	ENSGT00940000154974	ENSGT00940000153123.C	ENSGT00940000155495.C	ENSGT00940000160878	ENSGT00390000000696	ENSGT00390000009853	ENSGT00390000014797	ENSGT00390000012491	ENSGT00940000154430
Eastern brown snake	MODERN SPECIES	48	ENSPTXG00000006921	ADGRA1 (ENSPTXG00000006920)	ENSPTXG00000006910	ENSPTXG00000006602	NKX6-2 (ENSPTXG00000006600)	INPP5A (ENSPTXG00000006599)	ENSPTXG00000006598	PWWP2B (ENSPTXG00000006597)	STK32C (ENSPTXG00000006427)	DPYSL4 (ENSPTXG00000006426)	JAKMIP3 (ENSPTXG00000006332)	BNIP3 (ENSPTXG00000006323)	PPP2R2D (ENSPTXG00000006320)	TCERG1L (ENSPTXG00000006317) #18	GLRX3 (ENSPTXG00000006314) #19	EBF3 (ENSPTXG00000006293) #22	MGMT (ENSPTXG00000006288) #23	ENSPTXG00000006286
Mainland tiger snake	MODERN SPECIES	34	ADGRA1 (ENSNSUG00000012287)	ENSNSUG00000012272	ENSNSUG00000012003	NKX6-2 (ENSNSUG00000012001)	INPP5A (ENSNSUG00000012000)	ENSNSUG00000011999	PWWP2B (ENSNSUG00000011998)	ENSNSUG00000011996	STK32C (ENSNSUG00000011995)	DPYSL4 (ENSNSUG00000011972)	JAKMIP3 (ENSNSUG00000011971)	BNIP3 (ENSNSUG00000011970)	PPP2R2D (ENSNSUG00000011293)	TCERG1L (ENSNSUG00000011287) #18	GLRX3 (ENSNSUG00000011286) #19	EBF3 (ENSNSUG00000011251) #22	MGMT (ENSNSUG00000011250) #23	PTPRE (ENSNSUG00000011131) #25	CLRN3 (ENSNSUG00000011129) #28	ENSNSUG00000011126 #29	ENSNSUG00000011125
Blue-lipped sea krait	MODERN SPECIES	5989																ENSLLTG00000006583 #22