Vertebrata	ANCESTRAL SPECIES	166															ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00390000011180
Gnathostomata	ANCESTRAL SPECIES	29	ENSGT00390000018199.b	ENSGT00390000014001	ENSGT00940000157837	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000008178 #12	ENSGT00940000158659 #16	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33
Euteleostomi	ANCESTRAL SPECIES	5	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00940000154958	ENSGT00940000154556
Sarcopterygii	ANCESTRAL SPECIES	23	ENSGT00940000179750	ENSGT00940000158042	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00940000154958	ENSGT00940000154556
Amniota	ANCESTRAL SPECIES	12	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Mammalia	ANCESTRAL SPECIES	22	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Theria	ANCESTRAL SPECIES	13	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Eutheria	ANCESTRAL SPECIES	2	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Boreoeutheria	ANCESTRAL SPECIES	15	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Euarchontoglires	ANCESTRAL SPECIES	15	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Primates	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Haplorrhini	ANCESTRAL SPECIES	15	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Simiiformes	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958.lb.a
Catarrhini	ANCESTRAL SPECIES	17	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958.lb.a
Hominoidea	ANCESTRAL SPECIES	18	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Hominidae	ANCESTRAL SPECIES	19	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00950000183099.u.a.d.b.c.a.b.b ##21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	18	ENSGT01030000234579.A.b.x.b	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00950000183099.u.a.d.b.c.a.b.b ##21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00390000010721.a.a.a.b #28	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00950000182901.a.a.a.b.b	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37
Homo/Pan group	ANCESTRAL SPECIES	14	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.x.b	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00390000010721.a.a.a.b #28	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Pan	ANCESTRAL SPECIES	17	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.x.b	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00390000010721.a.a.a.b #28	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Chimpanzee	MODERN SPECIES	14	PAPOLG (ENSPTRG00000011948) #7	REL (ENSPTRG00000011949) #8	ENSPTRG00000048311 #9	PUS10 (ENSPTRG00000011951) #10	PEX13 (ENSPTRG00000011952) #11	SANBR (ENSPTRG00000011954) #12	C2AH2orf74 (ENSPTRG00000033941) #13	ENSPTRG00000023268 #14	ENSPTRG00000050629 #15	USP34 (ENSPTRG00000011959) #16	XPO1 (ENSPTRG00000011962) #17	FAM161A (ENSPTRG00000011964) #18	CCT4 (ENSPTRG00000011965) #19	COMMD1 (ENSPTRG00000011966) #20	ENSPTRG00000045695 #21	B3GNT2 (ENSPTRG00000051560) #22	TMEM17 (ENSPTRG00000011968) #23	EHBP1 (ENSPTRG00000011969) #24	OTX1 (ENSPTRG00000011972) #25	WDPCP (ENSPTRG00000024270) #26	MDH1 (ENSPTRG00000011974) #27	ENSPTRG00000046466 #28	ENSPTRG00000048626 #29	UGP2 (ENSPTRG00000011976) #30	VPS54 (ENSPTRG00000011978) #31	PELI1 (ENSPTRG00000023869) #32	LGALSL (ENSPTRG00000047293) #33	AFTPH (ENSPTRG00000011983) #34	ENSPTRG00000045952 #35	SERTAD2 (ENSPTRG00000030469) #36	SLC1A4 (ENSPTRG00000011985) #37
Bonobo	MODERN SPECIES	14	ENSPPAG00000040162	PAPOLG (ENSPPAG00000019917) #7	REL (ENSPPAG00000027755) #8	ENSPPAG00000036115 #9	PUS10 (ENSPPAG00000026137) #10	PEX13 (ENSPPAG00000028208) #11	SANBR (ENSPPAG00000028445) #12	C2orf74 (ENSPPAG00000027440) #13	ENSPPAG00000038853 #15	ENSPPAG00000040060 #15	USP34 (ENSPPAG00000031846) #16	XPO1 (ENSPPAG00000029699) #17	FAM161A (ENSPPAG00000037442) #18	CCT4 (ENSPPAG00000036821) #19	COMMD1 (ENSPPAG00000043574) #20	B3GNT2 (ENSPPAG00000024510) #22	TMEM17 (ENSPPAG00000011687) #23	EHBP1 (ENSPPAG00000043965) #24	OTX1 (ENSPPAG00000028464) #25	WDPCP (ENSPPAG00000032819) #26	MDH1 (ENSPPAG00000042469) #27	ENSPPAG00000032238 #28	UGP2 (ENSPPAG00000038898) #30	VPS54 (ENSPPAG00000028874) #31	PELI1 (ENSPPAG00000044117) #32	LGALSL (ENSPPAG00000039473) #33	AFTPH (ENSPPAG00000028223) #34	ENSPPAG00000031785 #35	SERTAD2 (ENSPPAG00000033136) #36	SLC1A4 (ENSPPAG00000041051) #37	CEP68 (ENSPPAG00000026445)
Human	MODERN SPECIES	11	CCDC85A (ENSG00000055813)	VRK2 (ENSG00000028116)	FANCL (ENSG00000115392)	BCL11A (ENSG00000119866)	PAPOLG (ENSG00000115421) #7	REL (ENSG00000162924) #8	PUS10 (ENSG00000162927) #10	PEX13 (ENSG00000162928) #11	SANBR (ENSG00000162929) #12	C2orf74 (ENSG00000237651) #13	USP34 (ENSG00000115464) #16	XPO1 (ENSG00000082898) #17	FAM161A (ENSG00000170264) #18	CCT4 (ENSG00000115484) #19	COMMD1 (ENSG00000173163) #20	B3GNT2 (ENSG00000170340) #22	TMEM17 (ENSG00000186889) #23	EHBP1 (ENSG00000115504) #24	OTX1 (ENSG00000115507) #25	WDPCP (ENSG00000143951) #26	MDH1 (ENSG00000014641) #27	UGP2 (ENSG00000169764) #30	VPS54 (ENSG00000143952) #31	PELI1 (ENSG00000197329) #32	LGALSL (ENSG00000119862) #33	AFTPH (ENSG00000119844) #34	SERTAD2 (ENSG00000179833) #36	SLC1A4 (ENSG00000115902) #37	CEP68 (ENSG00000011523)	RAB1A (ENSG00000138069)	ACTR2 (ENSG00000138071)
Gorilla	MODERN SPECIES	14	ENSGGOG00000024123	PAPOLG (ENSGGOG00000006083) #7	REL (ENSGGOG00000024826) #8	PUS10 (ENSGGOG00000026131) #10	PEX13 (ENSGGOG00000006620) #11	SANBR (ENSGGOG00000024214) #12	C2orf74 (ENSGGOG00000023058) #13	ENSGGOG00000014565 #15	ENSGGOG00000037807 #15	USP34 (ENSGGOG00000014575) #16	XPO1 (ENSGGOG00000034878) #17	FAM161A (ENSGGOG00000013942) #18	CCT4 (ENSGGOG00000007003) #19	COMMD1 (ENSGGOG00000007602) #20	RPSA (ENSGGOG00000026707) ##21	B3GNT2 (ENSGGOG00000025266) #22	ENSGGOG00000038261	EHBP1 (ENSGGOG00000034917) #24	OTX1 (ENSGGOG00000015410) #25	WDPCP (ENSGGOG00000011930) #26	MDH1 (ENSGGOG00000007085) #27	ENSGGOG00000036456 #28	UGP2 (ENSGGOG00000006283) #30	VPS54 (ENSGGOG00000006294) #31	PELI1 (ENSGGOG00000013460) #32	ENSGGOG00000022216	LGALSL (ENSGGOG00000006386) #33	ENSGGOG00000023155 #35	AFTPH (ENSGGOG00000008449) #34	SLC1A4 (ENSGGOG00000011211) #37	CEP68 (ENSGGOG00000005826)
Orangutan	MODERN SPECIES	14	BCL11A (ENSPPYG00000012393)	ENSPPYG00000030113	PAPOLG (ENSPPYG00000012392) #7	REL (ENSPPYG00000012391) #8	PUS10 (ENSPPYG00000012390) #10	PEX13 (ENSPPYG00000034552) #11	SANBR (ENSPPYG00000012388) #12	C2orf74 (ENSPPYG00000035727) #13	ENSPPYG00000036113 #15	USP34 (ENSPPYG00000012384) #16	XPO1 (ENSPPYG00000012383) #17	FAM161A (ENSPPYG00000012382) #18	CCT4 (ENSPPYG00000012381) #19	COMMD1 (ENSPPYG00000012380) #20	ENSPPYG00000019018 ##21	B3GNT2 (ENSPPYG00000012379) #22	TMEM17 (ENSPPYG00000012378) #23	EHBP1 (ENSPPYG00000012377) #24	ENSPPYG00000030010	OTX1 (ENSPPYG00000012376) #25	WDPCP (ENSPPYG00000012374) #26	MDH1 (ENSPPYG00000012373) #27	UGP2 (ENSPPYG00000012371) #30	VPS54 (ENSPPYG00000012370) #31	PELI1 (ENSPPYG00000012369) #32	LGALSL (ENSPPYG00000012366) #33	ENSPPYG00000012365 #35	AFTPH (ENSPPYG00000012364) #34	SERTAD2 (ENSPPYG00000035823) #36	SLC1A4 (ENSPPYG00000041756) #37	CEP68 (ENSPPYG00000012361)
Gibbon	MODERN SPECIES	4	ENSNLEG00000009505	ENSNLEG00000009507 #7	REL (ENSNLEG00000009519) #8	ENSNLEG00000035207 #9	PUS10 (ENSNLEG00000009527) #10	PEX13 (ENSNLEG00000009552) #11	SANBR (ENSNLEG00000009560) #12	C2orf74 (ENSNLEG00000009582) #13	ENSNLEG00000034163 #15	ENSNLEG00000027829 #15	USP34 (ENSNLEG00000009598) #16	XPO1 (ENSNLEG00000009680) #17	FAM161A (ENSNLEG00000009719) #18	CCT4 (ENSNLEG00000009723) #19	COMMD1 (ENSNLEG00000033234) #20	B3GNT2 (ENSNLEG00000035442) #22	TMEM17 (ENSNLEG00000009759) #23	EHBP1 (ENSNLEG00000009764) #24	ENSNLEG00000027460	OTX1 (ENSNLEG00000009808) #25	WDPCP (ENSNLEG00000009810) #26	MDH1 (ENSNLEG00000009823) #27	ENSNLEG00000035245 ##21	UGP2 (ENSNLEG00000031494) #30	VPS54 (ENSNLEG00000009859) #31	PELI1 (ENSNLEG00000009891) #32	ENSNLEG00000028443	LGALSL (ENSNLEG00000031680) #33	AFTPH (ENSNLEG00000009902) #34	ENSNLEG00000009923 #35	SERTAD2 (ENSNLEG00000029151) #36
Cercopithecidae	ANCESTRAL SPECIES	18	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958.lb.a
Cercopithecinae	ANCESTRAL SPECIES	17	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Cercopithecinae_a	ANCESTRAL SPECIES	17	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Macaca	ANCESTRAL SPECIES	17	ENSGT00940000156983.a.a	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Macaca_a	ANCESTRAL SPECIES	15	ENSGT00940000156467 #7	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.a.a.a.a.a.a.a	ENSGT00940000158732 #8	ENSGT00390000018318.u.b.a.b.a.a.a #9	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT01100000263493.a.b.b.a.a.b.b.a.a.a.a.a.a.b.a.a.a.b.b	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00950000182995.e.a.a.a.bb.b	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Crab-eating macaque	MODERN SPECIES	4	PUS10 (ENSMFAG00000000611) #10	PEX13 (ENSMFAG00000042959) #11	SANBR (ENSMFAG00000007392) #12	C2orf74 (ENSMFAG00000034596) #13	ENSMFAG00000042177 #15	USP34 (ENSMFAG00000043581) #16	XPO1 (ENSMFAG00000038679) #17	ENSMFAG00000057809	ENSMFAG00000061185	ENSMFAG00000063382	FAM161A (ENSMFAG00000028707) #18	CCT4 (ENSMFAG00000031348) #19	ENSMFAG00000056305	ENSMFAG00000016016	COMMD1 (ENSMFAG00000043104) #20	B3GNT2 (ENSMFAG00000029481) #22	TMEM17 (ENSMFAG00000063543) #23	EHBP1 (ENSMFAG00000043351) #24	OTX1 (ENSMFAG00000031554) #25	ENSMFAG00000030175	WDPCP (ENSMFAG00000033390) #26	MDH1 (ENSMFAG00000042090) #27	ENSMFAG00000059450	ENSMFAG00000056658	UGP2 (ENSMFAG00000035944) #30	VPS54 (ENSMFAG00000042525) #31	PELI1 (ENSMFAG00000045683) #32	ENSMFAG00000054126	ENSMFAG00000031922 #33	ENSMFAG00000035379 #35	AFTPH (ENSMFAG00000041331) #34
Rhesus	MODERN SPECIES	4	ENSMMUG00000055963 #9	PUS10 (ENSMMUG00000005685) #10	ENSMMUG00000052940	PEX13 (ENSMMUG00000005687) #11	SANBR (ENSMMUG00000021990) #12	C13H2orf74 (ENSMMUG00000041555) #13	AHSA2 (ENSMMUG00000008097) #15	USP34 (ENSMMUG00000008098) #16	XPO1 (ENSMMUG00000006941) #17	ENSMMUG00000059978	ENSMMUG00000056178	ENSMMUG00000063300	FAM161A (ENSMMUG00000013972) #18	CCT4 (ENSMMUG00000013973) #19	COMMD1 (ENSMMUG00000030824) #20	B3GNT2 (ENSMMUG00000014181) #22	TMEM17 (ENSMMUG00000057986) #23	EHBP1 (ENSMMUG00000016668) #24	OTX1 (ENSMMUG00000051405) #25	ENSMMUG00000030822	WDPCP (ENSMMUG00000003979) #26	MDH1 (ENSMMUG00000006163) #27	ENSMMUG00000060943	UGP2 (ENSMMUG00000008770) #30	VPS54 (ENSMMUG00000008772) #31	PELI1 (ENSMMUG00000059267) #32	LGALSL (ENSMMUG00000064711) #33	ENSMMUG00000006504 #35	AFTPH (ENSMMUG00000006503) #34	ENSMMUG00000014862	SERTAD2 (ENSMMUG00000047067) #36
Pig-tailed macaque	MODERN SPECIES	341	PAPOLG (ENSMNEG00000035939) #7	REL (ENSMNEG00000042843) #8	PUS10 (ENSMNEG00000043877) #10	PEX13 (ENSMNEG00000030840) #11	SANBR (ENSMNEG00000041924) #12	ENSMNEG00000033482	C2orf74 (ENSMNEG00000028498) #13	ENSMNEG00000042228	ENSMNEG00000036948 #15	ENSMNEG00000036676 #15	USP34 (ENSMNEG00000039067) #16	XPO1 (ENSMNEG00000030909) #17	FAM161A (ENSMNEG00000031037) #18	CCT4 (ENSMNEG00000044353) #19	COMMD1 (ENSMNEG00000024928) #20	B3GNT2 (ENSMNEG00000025770) #22	TMEM17 (ENSMNEG00000040952) #23	ENSMNEG00000038346	EHBP1 (ENSMNEG00000043070) #24	OTX1 (ENSMNEG00000044308) #25	WDPCP (ENSMNEG00000030809) #26	MDH1 (ENSMNEG00000039034) #27	UGP2 (ENSMNEG00000038452) #30	VPS54 (ENSMNEG00000031281) #31	PELI1 (ENSMNEG00000030553) #32	LGALSL (ENSMNEG00000029755) #33	AFTPH (ENSMNEG00000040816) #34	ENSMNEG00000025227 #35	SERTAD2 (ENSMNEG00000008861) #36	ENSMNEG00000006388	SLC1A4 (ENSMNEG00000004689) #37
Cercopithecinae_b	ANCESTRAL SPECIES	15	ENSGT01030000234579.A.b.w	ENSGT00390000008802.m.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958.lb.a
Cercopithecinae_d	ANCESTRAL SPECIES	32	ENSGT01030000234579.A.b.w	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000155413.l.a.b	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.a.a.a	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958.lb.a
Sooty mangabey	MODERN SPECIES	494	REL (ENSCATG00000035174) #8	PUS10 (ENSCATG00000045305) #10	PEX13 (ENSCATG00000039835) #11	SANBR (ENSCATG00000045345) #12	ENSCATG00000045334	C2orf74 (ENSCATG00000037754) #13	ENSCATG00000043938 #15	ENSCATG00000038823 #15	USP34 (ENSCATG00000042180) #16	ENSCATG00000013431	XPO1 (ENSCATG00000032674) #17	FAM161A (ENSCATG00000043996) #18	CCT4 (ENSCATG00000038933) #19	ENSCATG00000038149	COMMD1 (ENSCATG00000011551) #20	B3GNT2 (ENSCATG00000011785) #22	TMEM17 (ENSCATG00000038173) #23	EHBP1 (ENSCATG00000030805) #24	OTX1 (ENSCATG00000031998) #25	WDPCP (ENSCATG00000043458) #26	MDH1 (ENSCATG00000030537) #27	ENSCATG00000010001	UGP2 (ENSCATG00000038117) #30	VPS54 (ENSCATG00000000035) #31	PELI1 (ENSCATG00000031456) #32	LGALSL (ENSCATG00000029852) #33	AFTPH (ENSCATG00000032038) #34	ENSCATG00000045350 #35	SERTAD2 (ENSCATG00000012102) #36	SLC1A4 (ENSCATG00000036187) #37	CEP68 (ENSCATG00000032378)
Drill	MODERN SPECIES	951			ENSMLEG00000031853	PEX13 (ENSMLEG00000042218) #11	SANBR (ENSMLEG00000044342) #12	C2orf74 (ENSMLEG00000041467) #13	ENSMLEG00000028334 #15	ENSMLEG00000036543 #15	ENSMLEG00000029346	USP34 (ENSMLEG00000040976) #16	XPO1 (ENSMLEG00000032004) #17	FAM161A (ENSMLEG00000038057) #18	CCT4 (ENSMLEG00000037693) #19	ENSMLEG00000044216	COMMD1 (ENSMLEG00000042809) #20	B3GNT2 (ENSMLEG00000008417) #22	TMEM17 (ENSMLEG00000040238) #23	EHBP1 (ENSMLEG00000031553) #24	OTX1 (ENSMLEG00000029765) #25	WDPCP (ENSMLEG00000040899) #26	MDH1 (ENSMLEG00000029382) #27	UGP2 (ENSMLEG00000038204) #30	VPS54 (ENSMLEG00000034933) #31	PELI1 (ENSMLEG00000028248) #32
Olive baboon	MODERN SPECIES	5	BCL11A (ENSPANG00000018170)	ENSPANG00000000672	PAPOLG (ENSPANG00000014543) #7	REL (ENSPANG00000006148) #8	PUS10 (ENSPANG00000018036) #10	PEX13 (ENSPANG00000022181) #11	ENSPANG00000017323 #12	ENSPANG00000039323	C2orf74 (ENSPANG00000035894) #13	ENSPANG00000016913 #15	USP34 (ENSPANG00000025375) #16	XPO1 (ENSPANG00000006892) #17	FAM161A (ENSPANG00000010259) #18	CCT4 (ENSPANG00000019105) #19	COMMD1 (ENSPANG00000006093) #20	B3GNT2 (ENSPANG00000007808) #22	ENSPANG00000051251	TMEM17 (ENSPANG00000042367) #23	EHBP1 (ENSPANG00000016912) #24	OTX1 (ENSPANG00000038245) #25	WDPCP (ENSPANG00000019775) #26	ENSPANG00000044221	ENSPANG00000006332	MDH1 (ENSPANG00000014437) #27	UGP2 (ENSPANG00000020689) #30	VPS54 (ENSPANG00000022299) #31	PELI1 (ENSPANG00000008630) #32	LGALSL (ENSPANG00000007113) #33	AFTPH (ENSPANG00000019355) #34	ENSPANG00000033862 #35	SERTAD2 (ENSPANG00000021214) #36
Vervet Monkey	MODERN SPECIES	5	ENSCSAG00000019450	ENSCSAG00000019449	PAPOLG (ENSCSAG00000014408) #7	REL (ENSCSAG00000014415) #8	ENSCSAG00000014430	PUS10 (ENSCSAG00000014451) #10	PEX13 (ENSCSAG00000014465) #11	SANBR (ENSCSAG00000014480) #12	C2orf74 (ENSCSAG00000014493) #13	ENSCSAG00000014516 #15	USP34 (ENSCSAG00000014580) #16	XPO1 (ENSCSAG00000014606) #17	FAM161A (ENSCSAG00000014628) #18	CCT4 (ENSCSAG00000014640) #19	COMMD1 (ENSCSAG00000014646) #20	B3GNT2 (ENSCSAG00000019448) #22	ENSCSAG00000019447	TMEM17 (ENSCSAG00000014653) #23	EHBP1 (ENSCSAG00000014669) #24	OTX1 (ENSCSAG00000014675) #25	ENSCSAG00000019446	WDPCP (ENSCSAG00000014684) #26	MDH1 (ENSCSAG00000014691) #27	UGP2 (ENSCSAG00000014697) #30	VPS54 (ENSCSAG00000014705) #31	PELI1 (ENSCSAG00000014710) #32	LGALSL (ENSCSAG00000014717) #33	AFTPH (ENSCSAG00000014726) #34	SERTAD2 (ENSCSAG00000019445) #36	ENSCSAG00000019444	SLC1A4 (ENSCSAG00000014735) #37
Rhinopithecus	ANCESTRAL SPECIES	672															ENSGT00390000012029.e #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25
Black snub-nosed monkey	MODERN SPECIES	1711																B3GNT2 (ENSRBIG00000006660) #22
Golden snub-nosed monkey	MODERN SPECIES	1447															ENSRROG00000041531 #20	B3GNT2 (ENSRROG00000024571) #22	TMEM17 (ENSRROG00000038870) #23	EHBP1 (ENSRROG00000030374) #24	OTX1 (ENSRROG00000038350) #25
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES	13	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529.o #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029.h #20	ENSGT00940000155345.m #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h.a.b #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a.a.a #32	ENSGT00950000183050.b.b.a.a.b #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Cebidae	ANCESTRAL SPECIES	15	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529.o #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029.h #20	ENSGT00940000155345.m #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h.a.b #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a.a.b #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958.lb.a
Cebidae_a	ANCESTRAL SPECIES	30	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529.o #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00900000141074.e.b.a	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029.h #20	ENSGT00940000155345.m #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.h.a.b.b #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a.a.b #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958.lb.a	ENSGT00940000154277.a.b.a.b
Capuchin	MODERN SPECIES	23											ENSCCAG00000023277	FAM161A (ENSCCAG00000032868) #18	CCT4 (ENSCCAG00000036910) #19	ENSCCAG00000014874	COMMD1 (ENSCCAG00000021063) #20	B3GNT2 (ENSCCAG00000004376) #22	TMEM17 (ENSCCAG00000033287) #23	EHBP1 (ENSCCAG00000022934) #24	OTX1 (ENSCCAG00000037783) #25	WDPCP (ENSCCAG00000026603) #26	ENSCCAG00000032985 #27	UGP2 (ENSCCAG00000038081) #30	VPS54 (ENSCCAG00000037148) #31	ENSCCAG00000033895 #32	LGALSL (ENSCCAG00000035879) #33	ENSCCAG00000030319 #35	AFTPH (ENSCCAG00000022631) #34	ENSCCAG00000032655	SLC1A4 (ENSCCAG00000022825) #37	ENSCCAG00000037790	CEP68 (ENSCCAG00000022595)
Bolivian squirrel monkey	MODERN SPECIES	48	BCL11A (ENSSBOG00000020438)	PAPOLG (ENSSBOG00000026194) #7	REL (ENSSBOG00000036176) #8	PUS10 (ENSSBOG00000014791) #10	PEX13 (ENSSBOG00000026445) #11	SANBR (ENSSBOG00000025340) #12	C2orf74 (ENSSBOG00000026818) #13	ENSSBOG00000029475 #15	USP34 (ENSSBOG00000034202) #16	ENSSBOG00000020979	XPO1 (ENSSBOG00000034467) #17	ENSSBOG00000010136	FAM161A (ENSSBOG00000034089) #18	CCT4 (ENSSBOG00000026025) #19	COMMD1 (ENSSBOG00000032499) #20	ENSSBOG00000019927 #22	TMEM17 (ENSSBOG00000026954) #23	EHBP1 (ENSSBOG00000027993) #24	OTX1 (ENSSBOG00000030274) #25	WDPCP (ENSSBOG00000020988) #26	ENSSBOG00000035941 #27	UGP2 (ENSSBOG00000035973) #30	VPS54 (ENSSBOG00000034598) #31	PELI1 (ENSSBOG00000001340) #32	LGALSL (ENSSBOG00000029775) #33	ENSSBOG00000019039 #35	AFTPH (ENSSBOG00000027803) #34	SLC1A4 (ENSSBOG00000023405) #37	CEP68 (ENSSBOG00000033296)	RAB1A (ENSSBOG00000023732)	ENSSBOG00000031295
Marmoset	MODERN SPECIES	5	FANCL (ENSCJAG00000009275)	ENSCJAG00000080516	BCL11A (ENSCJAG00000009226)	PAPOLG (ENSCJAG00000009102) #7	REL (ENSCJAG00000008975) #8	PUS10 (ENSCJAG00000009054) #10	PEX13 (ENSCJAG00000009037) #11	SANBR (ENSCJAG00000009029) #12	C2orf74 (ENSCJAG00000042078) #13	USP34 (ENSCJAG00000044195) #16	XPO1 (ENSCJAG00000008877) #17	FAM161A (ENSCJAG00000008852) #18	CCT4 (ENSCJAG00000008703) #19	ENSCJAG00000060745 #20	COMMD1 (ENSCJAG00000008693) #20	B3GNT2 (ENSCJAG00000046682) #22	TMEM17 (ENSCJAG00000045778) #23	ENSCJAG00000077815	EHBP1 (ENSCJAG00000008586) #24	OTX1 (ENSCJAG00000083222) #25	ENSCJAG00000075756	WDPCP (ENSCJAG00000007061) #26	ENSCJAG00000007018 #27	UGP2 (ENSCJAG00000006960) #30	VPS54 (ENSCJAG00000006914) #31	PELI1 (ENSCJAG00000006889) #32	ENSCJAG00000070703	ENSCJAG00000006878 #33	ENSCJAG00000046867 #35	AFTPH (ENSCJAG00000006819) #34	SERTAD2 (ENSCJAG00000006818) #36
Mas night monkey	MODERN SPECIES	655	PEX13 (ENSANAG00000022255) #11	SANBR (ENSANAG00000030682) #12	C2orf74 (ENSANAG00000032268) #13	ENSANAG00000036395 #15	ENSANAG00000023187 #15	USP34 (ENSANAG00000028238) #16	ENSANAG00000019334	XPO1 (ENSANAG00000020802) #17	ENSANAG00000026753	FAM161A (ENSANAG00000033665) #18	CCT4 (ENSANAG00000036567) #19	COMMD1 (ENSANAG00000030463) #20	ENSANAG00000018780	ENSANAG00000036675	ENSANAG00000036898	ENSANAG00000019382 #22	ENSANAG00000024280	TMEM17 (ENSANAG00000023395) #23	EHBP1 (ENSANAG00000022884) #24	OTX1 (ENSANAG00000032160) #25	WDPCP (ENSANAG00000033928) #26	ENSANAG00000029892	ENSANAG00000038114 #27	ENSANAG00000019559	UGP2 (ENSANAG00000035096) #30	VPS54 (ENSANAG00000021718) #31	ENSANAG00000029544 #32	ENSANAG00000026716	LGALSL (ENSANAG00000035714) #33	AFTPH (ENSANAG00000033138) #34	ENSANAG00000025925 #35
Platyrrhini	ANCESTRAL SPECIES																	ENSGT00940000155345.n #22
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	1043	HSCB (ENSANAG00000031035)	CHEK2 (ENSANAG00000021570)	TTC28 (ENSANAG00000027053)	ENSANAG00000037180	ENSANAG00000021839	PITPNB (ENSANAG00000028739)	MN1 (ENSANAG00000034501)	CRYBA4 (ENSANAG00000033748)	CRYBB1 (ENSANAG00000037863)	TPST2 (ENSANAG00000022934)	TFIP11 (ENSANAG00000036330)	SRRD (ENSANAG00000038316)	HPS4 (ENSANAG00000034497)	ASPHD2 (ENSANAG00000038459)	SEZ6L (ENSANAG00000037177)	ENSANAG00000020723 #22	MYO18B (ENSANAG00000027815)	GRK3 (ENSANAG00000037553)	CRYBB2 (ENSANAG00000023253)	CRYBB3 (ENSANAG00000038308)
Mas night monkey	MODERN SPECIES	1079															CLEC6A (ENSANAG00000035639)	ENSANAG00000031568 #22	ENSANAG00000031579	CLEC4A (ENSANAG00000026901)	ENSANAG00000030527	NECAP1 (ENSANAG00000022127)	ENSANAG00000023975	FOXJ2 (ENSANAG00000024184)	ENSANAG00000037404	ENSANAG00000024998	ENSANAG00000026003	ENSANAG00000032495	ENSANAG00000020136	ENSANAG00000024394
Cebidae	ANCESTRAL SPECIES																	ENSGT00940000155345.n #22
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000155319	ENSGT00940000163004	ENSGT00940000154685.b.a	ENSGT00940000163609	ENSGT00940000154904.b	ENSGT00940000156296	ENSGT00390000002109	ENSGT00940000156612	ENSGT00940000163018	ENSGT00390000014577.a	ENSGT00390000017736.a	ENSGT00940000158731	ENSGT00940000160666	ENSGT00940000162400	ENSGT00940000162938	ENSGT00940000155345.n #22	ENSGT00940000158835	ENSGT00390000009359.a	ENSGT00940000161053	ENSGT00940000162534	ENSGT00940000161190	ENSGT00940000155987.b
Bolivian squirrel monkey	MODERN SPECIES	60	ENSSBOG00000006605 #32	PZP (ENSSBOG00000032616)	ENSSBOG00000012868	KLRG1 (ENSSBOG00000021642)	M6PR (ENSSBOG00000026524)	PHC1 (ENSSBOG00000021416)	ENSSBOG00000021193	A2ML1 (ENSSBOG00000031521)	RIMKLB (ENSSBOG00000020124)	MFAP5 (ENSSBOG00000032198)	AICDA (ENSSBOG00000035758)	CLEC4E (ENSSBOG00000021053)	CLEC4D (ENSSBOG00000036094)	ENSSBOG00000020459	CLEC6A (ENSSBOG00000023125)	ENSSBOG00000021993 #22	ENSSBOG00000032901	CLEC4A (ENSSBOG00000020390)	NECAP1 (ENSSBOG00000021996)	ENSSBOG00000033325	ENSSBOG00000027329	FOXJ2 (ENSSBOG00000019603)
Strepsirrhini	ANCESTRAL SPECIES	13	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.g.a ##27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	139	ENSOGAG00000028600	ENSOGAG00000026311	BCL11A (ENSOGAG00000024696)	PAPOLG (ENSOGAG00000003145) #7	REL (ENSOGAG00000013722) #8	PUS10 (ENSOGAG00000013726) #10	PEX13 (ENSOGAG00000032082) #11	SANBR (ENSOGAG00000013736) #12	C2orf74 (ENSOGAG00000033349) #13	ENSOGAG00000012906 #15	USP34 (ENSOGAG00000012908) #16	XPO1 (ENSOGAG00000000143) #17	FAM161A (ENSOGAG00000024144) #18	CCT4 (ENSOGAG00000003974) #19	COMMD1 (ENSOGAG00000029292) #20	ENSOGAG00000028774 #22	TMEM17 (ENSOGAG00000015014) #23	EHBP1 (ENSOGAG00000005236) #24	OTX1 (ENSOGAG00000027686) #25	WDPCP (ENSOGAG00000026615) #26	ENSOGAG00000014487 ##27	UGP2 (ENSOGAG00000013975) #30	VPS54 (ENSOGAG00000013980) #31	PELI1 (ENSOGAG00000013984) #32	LGALSL (ENSOGAG00000007901) #33	ENSOGAG00000011268 #34	SERTAD2 (ENSOGAG00000011272) #36	SLC1A4 (ENSOGAG00000005682) #37	CEP68 (ENSOGAG00000005687)	RAB1A (ENSOGAG00000026181)	ENSOGAG00000005688
Bushbaby	MODERN SPECIES	65																ENSOGAG00000031804 #22
Lemuriformes	ANCESTRAL SPECIES	19	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.g.a ##27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Lemuriformes_a	ANCESTRAL SPECIES	52	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00390000007888.c.a.l	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.g.a ##27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Greater bamboo lemur	MODERN SPECIES	110	BCL11A (ENSPSMG00000014400)	ENSPSMG00000014323	PAPOLG (ENSPSMG00000014309) #7	REL (ENSPSMG00000014248) #8	PUS10 (ENSPSMG00000014223) #10	PEX13 (ENSPSMG00000014186) #11	SANBR (ENSPSMG00000014173) #12	C2orf74 (ENSPSMG00000014130) #13	ENSPSMG00000014118 #15	ENSPSMG00000014116 #15	USP34 (ENSPSMG00000014044) #16	XPO1 (ENSPSMG00000013942) #17	FAM161A (ENSPSMG00000013859) #18	CCT4 (ENSPSMG00000013804) #19	COMMD1 (ENSPSMG00000013664) #20	B3GNT2 (ENSPSMG00000013657) #22	TMEM17 (ENSPSMG00000013649) #23
Euarchontoglires_A	ANCESTRAL SPECIES	14	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Glires	ANCESTRAL SPECIES	13	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Rodentia	ANCESTRAL SPECIES	15	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.f	ENSGT00940000154958
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.f	ENSGT00940000154958
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178.g #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.f	ENSGT00940000154958.y
Long-tailed chinchilla	MODERN SPECIES	131	CCDC85A (ENSCLAG00000015417)	VRK2 (ENSCLAG00000016561)	FANCL (ENSCLAG00000011359)	BCL11A (ENSCLAG00000009184)	PAPOLG (ENSCLAG00000008603) #7	REL (ENSCLAG00000007490) #8	PUS10 (ENSCLAG00000011001) #10	PEX13 (ENSCLAG00000015482) #11	SANBR (ENSCLAG00000009068) #12	ENSCLAG00000007857 #15	USP34 (ENSCLAG00000010299) #16	XPO1 (ENSCLAG00000012953) #17	FAM161A (ENSCLAG00000011652) #18	CCT4 (ENSCLAG00000014321) #19	COMMD1 (ENSCLAG00000013262) #20	B3GNT2 (ENSCLAG00000013147) #22	TMEM17 (ENSCLAG00000013487) #23	EHBP1 (ENSCLAG00000007561) #24	OTX1 (ENSCLAG00000010265) #25	ENSCLAG00000008400 #26	MDH1 (ENSCLAG00000007815) #27	UGP2 (ENSCLAG00000010416) #30	VPS54 (ENSCLAG00000007366) #31	PELI1 (ENSCLAG00000006481) #32	LGALSL (ENSCLAG00000015114) #33	ENSCLAG00000012344 #35	AFTPH (ENSCLAG00000012032) #34	SERTAD2 (ENSCLAG00000008318) #36	SLC1A4 (ENSCLAG00000008207) #37	CEP68 (ENSCLAG00000012193)	RAB1A (ENSCLAG00000014766)
Degu	MODERN SPECIES	119	ENSODEG00000012174	PAPOLG (ENSODEG00000012424) #7	REL (ENSODEG00000013430) #8	PUS10 (ENSODEG00000011720) #10	ENSODEG00000012067 #12	ENSODEG00000011830 #15	USP34 (ENSODEG00000011790) #16	ENSODEG00000020015	XPO1 (ENSODEG00000012632) #17	ENSODEG00000011466	ENSODEG00000011239	ENSODEG00000012087	ENSODEG00000012263	ENSODEG00000011618 #19	ENSODEG00000011341	B3GNT2 (ENSODEG00000011165) #22	ENSODEG00000011529 #23	EHBP1 (ENSODEG00000012259) #24	OTX1 (ENSODEG00000012071) #25	ENSODEG00000011160	ENSODEG00000011103	ENSODEG00000019821	WDPCP (ENSODEG00000011330) #26	MDH1 (ENSODEG00000011582) #27	ENSODEG00000012736	ENSODEG00000011552 #30	VPS54 (ENSODEG00000012541) #31	PELI1 (ENSODEG00000011189) #32	ENSODEG00000011901	LGALSL (ENSODEG00000011485) #33	ENSODEG00000011805 #34
Guinea pig	MODERN SPECIES	48	VRK2 (ENSCPOG00000015550)	FANCL (ENSCPOG00000015552)	ENSCPOG00000032549	BCL11A (ENSCPOG00000007587)	PAPOLG (ENSCPOG00000010306) #7	REL (ENSCPOG00000011659) #8	PUS10 (ENSCPOG00000011670) #10	PEX13 (ENSCPOG00000034678) #11	SANBR (ENSCPOG00000004783) #12	ENSCPOG00000004791 #15	USP34 (ENSCPOG00000004796) #16	XPO1 (ENSCPOG00000034053) #17	FAM161A (ENSCPOG00000002085) #18	CCT4 (ENSCPOG00000002086) #19	COMMD1 (ENSCPOG00000002088) #20	B3GNT2 (ENSCPOG00000034379) #22	TMEM17 (ENSCPOG00000035038) #23	EHBP1 (ENSCPOG00000002001) #24	OTX1 (ENSCPOG00000004881) #25	ENSCPOG00000030520 #26	ENSCPOG00000036317 #26	MDH1 (ENSCPOG00000010755) #27	UGP2 (ENSCPOG00000008459) #30	VPS54 (ENSCPOG00000037738) #31	PELI1 (ENSCPOG00000037199) #32	LGALSL (ENSCPOG00000039657) #33	ENSCPOG00000033401 #34	SLC1A4 (ENSCPOG00000008754) #37	CEP68 (ENSCPOG00000001592)	RAB1A (ENSCPOG00000015437)	ACTR2 (ENSCPOG00000025808)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	23	PEX13 (ENSHGLG00000042744) #11	ENSHGLG00000046720	ENSHGLG00000047849	ENSHGLG00000046080	SANBR (ENSHGLG00000013196) #12	ENSHGLG00000019155 #13	ENSHGLG00000019027 #15	USP34 (ENSHGLG00000003393) #16	ENSHGLG00000019983	XPO1 (ENSHGLG00000003115) #17	FAM161A (ENSHGLG00000003066) #18	ENSHGLG00000033740	ENSHGLG00000002885 #19	ENSHGLG00000046505	ENSHGLG00000035774 #20	ENSHGLG00000008287 #22	TMEM17 (ENSHGLG00000007663) #23	EHBP1 (ENSHGLG00000007334) #24	OTX1 (ENSHGLG00000007005) #25	ENSHGLG00000039651	WDPCP (ENSHGLG00000005902) #26	ENSHGLG00000034790	MDH1 (ENSHGLG00000033109) #27	UGP2 (ENSHGLG00000005211) #30	VPS54 (ENSHGLG00000004813) #31	ENSHGLG00000033380	PELI1 (ENSHGLG00000033688) #32	ENSHGLG00000035846 #33	ENSHGLG00000004286 #34	ENSHGLG00000004348 #35	ENSHGLG00000047996 #36
Naked mole-rat female	MODERN SPECIES	8	GALNT6 (ENSHGLG00000015114)	ENSHGLG00000015575	CELA1 (ENSHGLG00000015740)	BIN2 (ENSHGLG00000049230)	ENSHGLG00000050761	DAZAP2 (ENSHGLG00000004225)	POU6F1 (ENSHGLG00000006104)	TFCP2 (ENSHGLG00000006837)	CSRNP2 (ENSHGLG00000038318)	LETMD1 (ENSHGLG00000035309)	HIGD1C (ENSHGLG00000010374)	SLC11A2 (ENSHGLG00000015898)	ENSHGLG00000015984	METTL7A (ENSHGLG00000007624)	ENSHGLG00000033537	ENSHGLG00000003982 #22	ATF1 (ENSHGLG00000044800)	ENSHGLG00000035234	DIP2B (ENSHGLG00000006842)	ENSHGLG00000005513	ENSHGLG00000041442	ENSHGLG00000048426	CERS5 (ENSHGLG00000003946)	ENSHGLG00000005048	GPD1 (ENSHGLG00000006106)	ENSHGLG00000003935	SMARCD1 (ENSHGLG00000003601)	Asic1 (ENSHGLG00000004300)	RACGAP1 (ENSHGLG00000005812)	AQP6 (ENSHGLG00000003440)	ENSHGLG00000044398
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000018174	ENSHGLG00000034808	ENSHGLG00000050814	ENSHGLG00000019168	ENSHGLG00000043397	ENSHGLG00000037642	RAB33A (ENSHGLG00000018536)	AIFM1 (ENSHGLG00000018635)	ELF4 (ENSHGLG00000038769)	BCORL1 (ENSHGLG00000003484)	ENSHGLG00000020156	ENSHGLG00000002939	ZDHHC9 (ENSHGLG00000037667)	SASH3 (ENSHGLG00000041053)	XPNPEP2 (ENSHGLG00000002423)	ENSHGLG00000006742 #22	ENSHGLG00000048466	ENSHGLG00000005330	ENSHGLG00000050554	ENSHGLG00000048190	ENSHGLG00000019483	ENSHGLG00000050991	FAM199X (ENSHGLG00000012070)	ENSHGLG00000043015	IL1RAPL2 (ENSHGLG00000001940)	ENSHGLG00000038168	NRK (ENSHGLG00000050327)	SERPINA7 (ENSHGLG00000043412)	PWWP3B (ENSHGLG00000040535)	ENSHGLG00000049124	ENSHGLG00000003803
Naked mole-rat female	MODERN SPECIES	14						ENSHGLG00000033828	ENSHGLG00000049770	ENSHGLG00000035645	ENSHGLG00000040164	ENSHGLG00000018022	ENSHGLG00000033577	ENSHGLG00000015997	ENSHGLG00000017228	ENSHGLG00000037111	ENSHGLG00000021048	ENSHGLG00000045903 #22	ENSHGLG00000021044	ENSHGLG00000048730	ENSHGLG00000037395	ENSHGLG00000021239	PRIM2 (ENSHGLG00000017861)	ENSHGLG00000045680	ENSHGLG00000033625	RAB23 (ENSHGLG00000013030)	ENSHGLG00000018722	ZNF451 (ENSHGLG00000018721)	ENSHGLG00000044728	ENSHGLG00000016807	ENSHGLG00000015021	ENSHGLG00000042791	ENSHGLG00000049299
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Marmotini	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Marmotini_b	ANCESTRAL SPECIES	44	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000154451.s	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029.m #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Arctic ground squirrel	MODERN SPECIES	47			PAPOLG (ENSUPAG00010011631) #7	REL (ENSUPAG00010011621) #8	PUS10 (ENSUPAG00010011569) #10	PEX13 (ENSUPAG00010011557) #11	SANBR (ENSUPAG00010011475) #12	C2orf74 (ENSUPAG00010011464) #13	ENSUPAG00010011445 #15	USP34 (ENSUPAG00010011360) #16	XPO1 (ENSUPAG00010011307) #17	ENSUPAG00010011301	FAM161A (ENSUPAG00010011296) #18	CCT4 (ENSUPAG00010011275) #19	ENSUPAG00010011263 #20	B3GNT2 (ENSUPAG00010011255) #22	TMEM17 (ENSUPAG00010011243) #23	EHBP1 (ENSUPAG00010011097) #24	OTX1 (ENSUPAG00010011094) #25	WDPCP (ENSUPAG00010011061) #26	MDH1 (ENSUPAG00010011052) #27	UGP2 (ENSUPAG00010011000) #30	VPS54 (ENSUPAG00010010962) #31	PELI1 (ENSUPAG00010010945) #32	LGALSL (ENSUPAG00010010929) #33	AFTPH (ENSUPAG00010010843) #34	SERTAD2 (ENSUPAG00010010839) #36	ENSUPAG00010010837	SLC1A4 (ENSUPAG00010010829) #37	CEP68 (ENSUPAG00010010822)	RAB1A (ENSUPAG00010010773)
Squirrel	MODERN SPECIES	91	PAPOLG (ENSSTOG00000010861) #7	REL (ENSSTOG00000005785) #8	PUS10 (ENSSTOG00000005814) #10	PEX13 (ENSSTOG00000005864) #11	SANBR (ENSSTOG00000005893) #12	ENSSTOG00000029668	C2orf74 (ENSSTOG00000026908) #13	ENSSTOG00000007718 #15	USP34 (ENSSTOG00000007744) #16	ENSSTOG00000020670	XPO1 (ENSSTOG00000016122) #17	ENSSTOG00000028618	FAM161A (ENSSTOG00000026146) #18	CCT4 (ENSSTOG00000014911) #19	COMMD1 (ENSSTOG00000015062) #20	B3GNT2 (ENSSTOG00000015068) #22	TMEM17 (ENSSTOG00000009462) #23	EHBP1 (ENSSTOG00000020225) #24	OTX1 (ENSSTOG00000025219) #25	WDPCP (ENSSTOG00000014213) #26	MDH1 (ENSSTOG00000014227) #27	ENSSTOG00000023912	UGP2 (ENSSTOG00000000789) #30	VPS54 (ENSSTOG00000023517) #31	PELI1 (ENSSTOG00000026315) #32	LGALSL (ENSSTOG00000024204) #33	AFTPH (ENSSTOG00000020828) #34	ENSSTOG00000030042 #35	SERTAD2 (ENSSTOG00000008454) #36	SLC1A4 (ENSSTOG00000025160) #37	CEP68 (ENSSTOG00000011479)
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000007079	PAPOLG (ENSMMMG00000007034) #7	REL (ENSMMMG00000007001) #8	ENSMMMG00000006930 #10	PEX13 (ENSMMMG00000006925) #11	SANBR (ENSMMMG00000006843) #12	ENSMMMG00000006840	C2orf74 (ENSMMMG00000006827) #13	ENSMMMG00000006820 #15	USP34 (ENSMMMG00000006722) #16	XPO1 (ENSMMMG00000006603) #17	ENSMMMG00000006598	ENSMMMG00000006583 #18	CCT4 (ENSMMMG00000006543) #19	ENSMMMG00000006529 #20	B3GNT2 (ENSMMMG00000006495) #22	TMEM17 (ENSMMMG00000006473) #23	EHBP1 (ENSMMMG00000006363) #24	OTX1 (ENSMMMG00000006353) #25	WDPCP (ENSMMMG00000006330) #26	MDH1 (ENSMMMG00000006303) #27	ENSMMMG00000006286	UGP2 (ENSMMMG00000006263) #30	VPS54 (ENSMMMG00000006188) #31	PELI1 (ENSMMMG00000006175) #32	LGALSL (ENSMMMG00000006152) #33	AFTPH (ENSMMMG00000006097) #34	ENSMMMG00000006048	ENSMMMG00000006042	SLC1A4 (ENSMMMG00000006026) #37	CEP68 (ENSMMMG00000005980)
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005023730	C2orf74 (ENSSVLG00005023693) #13	ENSSVLG00005023655 #15	ENSSVLG00005023624	ENSSVLG00005023593 #15	USP34 (ENSSVLG00005023531) #16	XPO1 (ENSSVLG00005023207) #17	ENSSVLG00005023491 #17	ENSSVLG00005023117	ENSSVLG00005023092	FAM161A (ENSSVLG00005023008) #18	CCT4 (ENSSVLG00005022942) #19	CRIPT (ENSSVLG00005022896)	ENSSVLG00005022859 #20	ENSSVLG00005022821	B3GNT2 (ENSSVLG00005022804) #22	TMEM17 (ENSSVLG00005022771) #23	EHBP1 (ENSSVLG00005022645) #24	OTX1 (ENSSVLG00005022587) #25	WDPCP (ENSSVLG00005022261) #26	MDH1 (ENSSVLG00005022103) #27	UGP2 (ENSSVLG00005021917) #30	VPS54 (ENSSVLG00005021631) #31	PELI1 (ENSSVLG00005021561) #32	LGALSL (ENSSVLG00005021478) #33	ENSSVLG00005021416 #34	SERTAD2 (ENSSVLG00005021387) #36	SLC1A4 (ENSSVLG00005021330) #37	ENSSVLG00005021277	ENSSVLG00005021243	ENSSVLG00005021194
Rodentia_B	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Kangaroo rat	MODERN SPECIES	382	Bcl11a (ENSDORG00000010064)	Papolg (ENSDORG00000016228) #7	ENSDORG00000030049	Rel (ENSDORG00000011388) #8	Pus10 (ENSDORG00000005550) #10	Pex13 (ENSDORG00000009725) #11	ENSDORG00000011221 #12	ENSDORG00000011227 #13	Ahsa2 (ENSDORG00000012061) #15	Usp34 (ENSDORG00000012062) #16	Xpo1 (ENSDORG00000013050) #17	ENSDORG00000026102 #18	Cct4 (ENSDORG00000002542) #19	Commd1 (ENSDORG00000001166) #20	ENSDORG00000027292	B3gnt2 (ENSDORG00000024683) #22	Tmem17 (ENSDORG00000024954) #23	Ehbp1 (ENSDORG00000002628) #24	ENSDORG00000023858	Otx1 (ENSDORG00000024553) #25	Wdpcp (ENSDORG00000003329) #26	ENSDORG00000009021	Mdh1 (ENSDORG00000000099) #27	Rasl2-9 (ENSDORG00000027038)	Ugp2 (ENSDORG00000013164) #30	Vps54 (ENSDORG00000009782) #31	Peli1 (ENSDORG00000025404) #32	ENSDORG00000027919 #33	ENSDORG00000004159 #34	ENSDORG00000027058 #35	Sertad2 (ENSDORG00000025954) #36
Myomorpha	ANCESTRAL SPECIES	24	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Muroidea	ANCESTRAL SPECIES	21	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Cricetinae	ANCESTRAL SPECIES	37	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Chinese hamster chok1gshd	MODERN SPECIES	121	Bcl11a (ENSCGRG00001014052)	Papolg (ENSCGRG00001014951) #7	ENSCGRG00001011053	Rel (ENSCGRG00001012159) #8	Pus10 (ENSCGRG00001015226) #10	Pex13 (ENSCGRG00001006134) #11	Sanbr (ENSCGRG00001018010) #12	1700093K21Rik (ENSCGRG00001014409) #13	Ahsa2 (ENSCGRG00001004669) #15	Usp34 (ENSCGRG00001006322) #16	Xpo1 (ENSCGRG00001000263) #17	ENSCGRG00001013463 #18	Cct4 (ENSCGRG00001016718) #19	ENSCGRG00001007132	Commd1 (ENSCGRG00001007842) #20	B3gnt2 (ENSCGRG00001005196) #22	ENSCGRG00001025059	Tmem17 (ENSCGRG00001024384) #23	Ehbp1 (ENSCGRG00001022633) #24	Otx1 (ENSCGRG00001017328) #25	Wdpcp (ENSCGRG00001012886) #26	ENSCGRG00001023990	Mdh1 (ENSCGRG00001021102) #27	UGP2 (ENSCGRG00001012845) #30	Vps54 (ENSCGRG00001009286) #31	Peli1 (ENSCGRG00001021958) #32	Gm5065 (ENSCGRG00001013868) #33	ENSCGRG00001009126 #35	Aftph (ENSCGRG00001016162) #34	Sertad2 (ENSCGRG00001009657) #36	ENSCGRG00001005474
Golden Hamster	MODERN SPECIES	639	Vrk2 (ENSMAUG00000013376)	Fancl (ENSMAUG00000012141)	Bcl11a (ENSMAUG00000010170)	Papolg (ENSMAUG00000009088) #7	Rel (ENSMAUG00000020172) #8	Pus10 (ENSMAUG00000007507) #10	ENSMAUG00000009603 #11	ENSMAUG00000007138 #12	1700093K21Rik (ENSMAUG00000002621) #13	Ahsa2 (ENSMAUG00000019192) #15	Usp34 (ENSMAUG00000015413) #16	Xpo1 (ENSMAUG00000006769) #17	ENSMAUG00000012775 #18	Cct4 (ENSMAUG00000000518) #19	Commd1 (ENSMAUG00000010569) #20	B3gnt2 (ENSMAUG00000002963) #22	Tmem17 (ENSMAUG00000003448) #23	Ehbp1 (ENSMAUG00000000935) #24	Otx1 (ENSMAUG00000019114) #25	Wdpcp (ENSMAUG00000011349) #26	ENSMAUG00000012018	Mdh1 (ENSMAUG00000018086) #27	ENSMAUG00000012689 #30	Vps54 (ENSMAUG00000010788) #31	Peli1 (ENSMAUG00000012937) #32	ENSMAUG00000015033 #33	Aftph (ENSMAUG00000016557) #34	Sertad2 (ENSMAUG00000004242) #36	Slc1a4 (ENSMAUG00000019775) #37	Cep68 (ENSMAUG00000014820)	Rab1a (ENSMAUG00000012156)
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Northern American deer mouse	MODERN SPECIES	1	Bcl11a (ENSPEMG00000008063)	ENSPEMG00000027866	ENSPEMG00000008960 #7	Rel (ENSPEMG00000009851) #8	Pus10 (ENSPEMG00000013145) #10	Pex13 (ENSPEMG00000018236) #11	Sanbr (ENSPEMG00000002385) #12	1700093K21Rik (ENSPEMG00000004943) #13	Ahsa2 (ENSPEMG00000008242) #15	Usp34 (ENSPEMG00000013241) #16	Xpo1 (ENSPEMG00000010103) #17	ENSPEMG00000011408 #18	Cct4 (ENSPEMG00000014381) #19	Commd1 (ENSPEMG00000008857) #20	ENSPEMG00000013373	B3gnt2 (ENSPEMG00000030694) #22	ENSPEMG00000029232	Tmem17 (ENSPEMG00000012666) #23	Ehbp1 (ENSPEMG00000014061) #24	Otx1 (ENSPEMG00000027636) #25	Wdpcp (ENSPEMG00000016341) #26	Mdh1 (ENSPEMG00000007456) #27	Ugp2 (ENSPEMG00000010268) #30	Vps54 (ENSPEMG00000012405) #31	Peli1 (ENSPEMG00000030617) #32	ENSPEMG00000015267 #33	Aftph (ENSPEMG00000010156) #34	Sertad2 (ENSPEMG00000027852) #36	ENSPEMG00000016241	Slc1a4 (ENSPEMG00000018063) #37	Cep68 (ENSPEMG00000002161)
Prairie vole	MODERN SPECIES	92				ENSMOCG00000000119	ENSMOCG00000012151	ENSMOCG00000002753 #12	ENSMOCG00000011390 #12	1700093K21Rik (ENSMOCG00000014054) #13	ENSMOCG00000017180 #15	Usp34 (ENSMOCG00000002256) #16	Xpo1 (ENSMOCG00000012169) #17	ENSMOCG00000018790	ENSMOCG00000016877 #18	Cct4 (ENSMOCG00000011789) #19	Commd1 (ENSMOCG00000006391) #20	B3gnt2 (ENSMOCG00000000086) #22	Tmem17 (ENSMOCG00000015494) #23	Ehbp1 (ENSMOCG00000007287) #24	Otx1 (ENSMOCG00000014191) #25	Wdpcp (ENSMOCG00000003579) #26	Mdh1 (ENSMOCG00000015448) #27	Ugp2 (ENSMOCG00000009715) #30	Vps54 (ENSMOCG00000009563) #31	Peli1 (ENSMOCG00000016437) #32	Gm5065 (ENSMOCG00000014300) #33	ENSMOCG00000003932 #35	Aftph (ENSMOCG00000015081) #34	Sertad2 (ENSMOCG00000002173) #36	Slc1a4 (ENSMOCG00000001173) #37	Cep68 (ENSMOCG00000003444)	Rab1a (ENSMOCG00000017022)
Murinae	ANCESTRAL SPECIES	12	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00950000183152.A	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Mus	ANCESTRAL SPECIES	14	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00950000183152.A	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00950000183152.A	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00950000183152.A	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Mouse	MODERN SPECIES	2	Bcl11a (ENSMUSG00000000861)	A830031A19Rik (ENSMUSG00000055010)	Papolg (ENSMUSG00000020273) #7	Rel (ENSMUSG00000020275) #8	Pus10 (ENSMUSG00000020280) #10	Pex13 (ENSMUSG00000020283) #11	Sanbr (ENSMUSG00000042208) #12	1700093K21Rik (ENSMUSG00000020286) #13	Ahsa2 (ENSMUSG00000020288) #15	Usp34 (ENSMUSG00000056342) #16	Xpo1 (ENSMUSG00000020290) #17	Fam161a (ENSMUSG00000049811) #18	Cct4 (ENSMUSG00000007739) #19	Commd1 (ENSMUSG00000051355) #20	Commd1b (ENSMUSG00000098650)	B3gnt2 (ENSMUSG00000051650) #22	Tmem17 (ENSMUSG00000049904) #23	Ehbp1 (ENSMUSG00000042302) #24	Otx1 (ENSMUSG00000005917) #25	Wdpcp (ENSMUSG00000020319) #26	Mdh1 (ENSMUSG00000020321) #27	Ugp2 (ENSMUSG00000001891) #30	Vps54 (ENSMUSG00000020128) #31	Peli1 (ENSMUSG00000020134) #32	Lgalsl (ENSMUSG00000042363) #33	Aftph (ENSMUSG00000049659) #34	Sertad2 (ENSMUSG00000049800) #36	Slc1a4 (ENSMUSG00000020142) #37	Cep68 (ENSMUSG00000044066)	Rab1a (ENSMUSG00000020149)	Actr2 (ENSMUSG00000020152)
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00950000183152.A	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
spretus	MODERN SPECIES	2	A830031A19Rik (MGP_SPRETEiJ_G0016988)	Papolg (MGP_SPRETEiJ_G0016987) #7	Rel (MGP_SPRETEiJ_G0016986) #8	Pus10 (MGP_SPRETEiJ_G0016985) #10	MGP_SPRETEiJ_G0016984 #11	Sanbr (MGP_SPRETEiJ_G0016983) #12	1700093K21Rik (MGP_SPRETEiJ_G0016982) #13	Ahsa2 (MGP_SPRETEiJ_G0016981) #15	Usp34 (MGP_SPRETEiJ_G0016980) #16	Xpo1 (MGP_SPRETEiJ_G0016979) #17	MGP_SPRETEiJ_G0016978 #18	Cct4 (MGP_SPRETEiJ_G0016977) #19	MGP_SPRETEiJ_G0016976	Commd1 (MGP_SPRETEiJ_G0016975) #20	MGP_SPRETEiJ_G0016974 #20	B3gnt2 (MGP_SPRETEiJ_G0016973) #22	MGP_SPRETEiJ_G0016972	Tmem17 (MGP_SPRETEiJ_G0016971) #23	Ehbp1 (MGP_SPRETEiJ_G0016970) #24	Otx1 (MGP_SPRETEiJ_G0016969) #25	Wdpcp (MGP_SPRETEiJ_G0016968) #26	Mdh1 (MGP_SPRETEiJ_G0016967) #27	Ugp2 (MGP_SPRETEiJ_G0016966) #30	Vps54 (MGP_SPRETEiJ_G0016965) #31	Peli1 (MGP_SPRETEiJ_G0016964) #32	Lgalsl (MGP_SPRETEiJ_G0016963) #33	Aftph (MGP_SPRETEiJ_G0016962) #34	Sertad2 (MGP_SPRETEiJ_G0016961) #36	Slc1a4 (MGP_SPRETEiJ_G0016960) #37	Cep68 (MGP_SPRETEiJ_G0016959)	Rab1a (MGP_SPRETEiJ_G0016958)
Steppe mouse	MODERN SPECIES	3019									Xpo1 (ENSMSIG00000031855) #17	ENSMSIG00000031860	ENSMSIG00000031862 #18	Cct4 (ENSMSIG00000031863) #19	ENSMSIG00000031865	Commd1 (ENSMSIG00000031866) #20	ENSMSIG00000031867	B3gnt2 (ENSMSIG00000031870) #22	ENSMSIG00000031871	ENSMSIG00000031872	Tmem17 (ENSMSIG00000031873) #23	Ehbp1 (ENSMSIG00000031874) #24	Otx1 (ENSMSIG00000031875) #25	Wdpcp (ENSMSIG00000031876) #26	Mdh1 (ENSMSIG00000031877) #27	ENSMSIG00000031878	ENSMSIG00000031879
Ryukyu mouse	MODERN SPECIES	2	Bcl11a (MGP_CAROLIEiJ_G0016146)	MGP_CAROLIEiJ_G0016145	Papolg (MGP_CAROLIEiJ_G0016144) #7	Rel (MGP_CAROLIEiJ_G0016143) #8	Pus10 (MGP_CAROLIEiJ_G0016142) #10	Pex13 (MGP_CAROLIEiJ_G0016141) #11	Sanbr (MGP_CAROLIEiJ_G0016140) #12	1700093K21Rik (MGP_CAROLIEiJ_G0016139) #13	Ahsa2 (MGP_CAROLIEiJ_G0016138) #15	Usp34 (MGP_CAROLIEiJ_G0016137) #16	Xpo1 (MGP_CAROLIEiJ_G0016136) #17	MGP_CAROLIEiJ_G0016135 #18	Cct4 (MGP_CAROLIEiJ_G0016134) #19	MGP_CAROLIEiJ_G0016133	MGP_CAROLIEiJ_G0016132 #20	B3gnt2 (MGP_CAROLIEiJ_G0016131) #22	MGP_CAROLIEiJ_G0016130 #20	MGP_CAROLIEiJ_G0016129	Tmem17 (MGP_CAROLIEiJ_G0016128) #23	Ehbp1 (MGP_CAROLIEiJ_G0016127) #24	Otx1 (MGP_CAROLIEiJ_G0016126) #25	Wdpcp (MGP_CAROLIEiJ_G0016125) #26	Mdh1 (MGP_CAROLIEiJ_G0016124) #27	Ugp2 (MGP_CAROLIEiJ_G0016123) #30	Vps54 (MGP_CAROLIEiJ_G0016122) #31	Peli1 (MGP_CAROLIEiJ_G0016121) #32	Gm5065 (MGP_CAROLIEiJ_G0016120) #33	Aftph (MGP_CAROLIEiJ_G0016119) #34	Sertad2 (MGP_CAROLIEiJ_G0016118) #36	Slc1a4 (MGP_CAROLIEiJ_G0016117) #37	Cep68 (MGP_CAROLIEiJ_G0016116)
Shrew mouse	MODERN SPECIES	4	MGP_PahariEiJ_G0016745	Papolg (MGP_PahariEiJ_G0016746) #7	Rel (MGP_PahariEiJ_G0016747) #8	Pus10 (MGP_PahariEiJ_G0016748) #10	Pex13 (MGP_PahariEiJ_G0016749) #11	Sanbr (MGP_PahariEiJ_G0016750) #12	1700093K21Rik (MGP_PahariEiJ_G0016751) #13	Ahsa2 (MGP_PahariEiJ_G0016752) #15	MGP_PahariEiJ_G0016753 #16	Xpo1 (MGP_PahariEiJ_G0016754) #17	MGP_PahariEiJ_G0016755 #18	Cct4 (MGP_PahariEiJ_G0016756) #19	Commd1 (MGP_PahariEiJ_G0016757) #20	MGP_PahariEiJ_G0016758 #20	MGP_PahariEiJ_G0016759	B3gnt2 (MGP_PahariEiJ_G0016760) #22	MGP_PahariEiJ_G0016761	Tmem17 (MGP_PahariEiJ_G0016762) #23	Ehbp1 (MGP_PahariEiJ_G0016763) #24	Otx1 (MGP_PahariEiJ_G0016764) #25	MGP_PahariEiJ_G0016765 #26	Mdh1 (MGP_PahariEiJ_G0016766) #27	Ugp2 (MGP_PahariEiJ_G0016767) #30	Vps54 (MGP_PahariEiJ_G0016768) #31	Peli1 (MGP_PahariEiJ_G0016769) #32	MGP_PahariEiJ_G0016770 #33	Lgalsl (MGP_PahariEiJ_G0016771) #33	Aftph (MGP_PahariEiJ_G0016772) #34	Sertad2 (MGP_PahariEiJ_G0016773) #36	Slc1a4 (MGP_PahariEiJ_G0016774) #37	Cep68 (MGP_PahariEiJ_G0016775)
Rat	MODERN SPECIES	5	Papolg (ENSRNOG00000006261) #7	Rel (ENSRNOG00000054437) #8	Pus10 (ENSRNOG00000054151) #10	Pex13 (ENSRNOG00000054896) #11	ENSRNOG00000062465	Sanbr (ENSRNOG00000054669) #12	C14h2orf74 (ENSRNOG00000051590) #13	Ahsa2 (ENSRNOG00000052142) #15	LOC108352814 (ENSRNOG00000071093)	Usp34 (ENSRNOG00000051889) #16	Xpo1 (ENSRNOG00000009935) #17	Fam161a (ENSRNOG00000009881) #18	Cct4 (ENSRNOG00000009642) #19	Zrsr2-ps1 (ENSRNOG00000009639)	Commd1 (ENSRNOG00000009281) #20	B3gnt2 (ENSRNOG00000009267) #22	LOC100361636 (ENSRNOG00000033346)	AABR07016623.1 (ENSRNOG00000009240)	Tmem17 (ENSRNOG00000009220) #23	Ehbp1 (ENSRNOG00000008917) #24	Otx1 (ENSRNOG00000065081) #25	ENSRNOG00000065408	Wdpcp (ENSRNOG00000054331) #26	Mdh1 (ENSRNOG00000008103) #27	Ugp2 (ENSRNOG00000008079) #30	Vps54 (ENSRNOG00000007125) #31	Peli1 (ENSRNOG00000006329) #32	LOC108352809 (ENSRNOG00000042277) ##9	Lgalsl (ENSRNOG00000005464) #33	LOC108352861 (ENSRNOG00000029052)	Aftph (ENSRNOG00000005411) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	1270			Papolg (ENSNGAG00000001120) #7	Rel (ENSNGAG00000005092) #8	Pus10 (ENSNGAG00000009489) #10	Pex13 (ENSNGAG00000012683) #11	ENSNGAG00000015574 #12	1700093K21Rik (ENSNGAG00000023598) #13	Ahsa2 (ENSNGAG00000008076) #15	Usp34 (ENSNGAG00000023618) #16	Xpo1 (ENSNGAG00000022158) #17	ENSNGAG00000002122 #18	Cct4 (ENSNGAG00000023486) #19	Commd1 (ENSNGAG00000019828) #20	ENSNGAG00000011974	B3gnt2 (ENSNGAG00000022382) #22	ENSNGAG00000018903
Lesser Egyptian jerboa	MODERN SPECIES	74	Prkd3 (ENSJJAG00000021089)	Ndufaf7 (ENSJJAG00000021194)	Cebpz (ENSJJAG00000011428)	Cebpzos (ENSJJAG00000016694)	ENSJJAG00000015000	Gpatch11 (ENSJJAG00000015127)	Heatr5b (ENSJJAG00000016395)	Strn (ENSJJAG00000022124)	Vit (ENSJJAG00000000898)	Fez2 (ENSJJAG00000024083)	Crim1 (ENSJJAG00000006651)	Fam98a (ENSJJAG00000012732)	Rasgrp3 (ENSJJAG00000021552)	ENSJJAG00000003107 #19	Commd1 (ENSJJAG00000006007) #20	B3gnt2 (ENSJJAG00000007561) #22	Tmem17 (ENSJJAG00000007029) #23	Ehbp1 (ENSJJAG00000023917) #24	Otx1 (ENSJJAG00000011287) #25	ENSJJAG00000015148 #26	ENSJJAG00000014833 #26	Mdh1 (ENSJJAG00000024369) #27	Ugp2 (ENSJJAG00000014432) #30	Vps54 (ENSJJAG00000012401) #31	Peli1 (ENSJJAG00000000296) #32	Gm5065 (ENSJJAG00000016772) #33	ENSJJAG00000020384 #34	Sertad2 (ENSJJAG00000015989) #36	Slc1a4 (ENSJJAG00000002418) #37	Cep68 (ENSJJAG00000016421)	Rab1a (ENSJJAG00000014396)
Lagomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824.c #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556.lb.a
Rabbit	MODERN SPECIES	11	VRK2 (ENSOCUG00000007388)	FANCL (ENSOCUG00000005105)	BCL11A (ENSOCUG00000023948)	PAPOLG (ENSOCUG00000004962) #7	REL (ENSOCUG00000004968) #8	PUS10 (ENSOCUG00000007867) #10	PEX13 (ENSOCUG00000007894) #11	SANBR (ENSOCUG00000009559) #12	C2orf74 (ENSOCUG00000029395) #13	ENSOCUG00000017817 #15	USP34 (ENSOCUG00000017819) #16	XPO1 (ENSOCUG00000004986) #17	ENSOCUG00000000707 #18	CCT4 (ENSOCUG00000024386) #19	COMMD1 (ENSOCUG00000001093) #20	B3GNT2 (ENSOCUG00000017281) #22	TMEM17 (ENSOCUG00000010487) #23	ENSOCUG00000037865	EHBP1 (ENSOCUG00000013563) #24	OTX1 (ENSOCUG00000021773) #25	WDPCP (ENSOCUG00000006156) #26	MDH1 (ENSOCUG00000006166) #27	ENSOCUG00000002137 #30	VPS54 (ENSOCUG00000002143) #31	PELI1 (ENSOCUG00000027961) #32	ENSOCUG00000031191	LGALSL (ENSOCUG00000013957) #33	AFTPH (ENSOCUG00000006390) #34	SERTAD2 (ENSOCUG00000008192) #36	ENSOCUG00000010821 #37	CEP68 (ENSOCUG00000016996)
Pika	MODERN SPECIES	410														CCT4 (ENSOPRG00000013918) #19	COMMD1 (ENSOPRG00000013939) #20	B3GNT2 (ENSOPRG00000013946) #22	TMEM17 (ENSOPRG00000013953) #23
Laurasiatheria	ANCESTRAL SPECIES	13	ENSGT00950000185458	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000168989	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155345 #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	11461																ENSEEUG00000006777 #22
Hedgehog	MODERN SPECIES	13384																ENSEEUG00000012408 #22
Laurasiatheria_a	ANCESTRAL SPECIES	17	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Artiodactyla	ANCESTRAL SPECIES	16	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Suina	ANCESTRAL SPECIES	13	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Chacoan peccary	MODERN SPECIES	777	VRK2 (ENSCWAG00000012464)	FANCL (ENSCWAG00000012564)	BCL11A (ENSCWAG00000012881)	PAPOLG (ENSCWAG00000013291) #7	REL (ENSCWAG00000013351) #8	PUS10 (ENSCWAG00000013466) #10	PEX13 (ENSCWAG00000013501) #11	SANBR (ENSCWAG00000013586) #12	C2orf74 (ENSCWAG00000013830) #13	ENSCWAG00000013858 #15	USP34 (ENSCWAG00000013898) #16	XPO1 (ENSCWAG00000014013) #17	FAM161A (ENSCWAG00000014151) #18	CCT4 (ENSCWAG00000014318) #19	ENSCWAG00000014428 #20	B3GNT2 (ENSCWAG00000014453) #22	ENSCWAG00000014470	TMEM17 (ENSCWAG00000014499) #23	EHBP1 (ENSCWAG00000014544) #24	OTX1 (ENSCWAG00000014783) #25	ENSCWAG00000014828 #26	MDH1 (ENSCWAG00000014856) #27	UGP2 (ENSCWAG00000014887) #30	VPS54 (ENSCWAG00000015086) #31	PELI1 (ENSCWAG00000015638) #32	LGALSL (ENSCWAG00000015689) #33	AFTPH (ENSCWAG00000015787) #34	SERTAD2 (ENSCWAG00000015818) #36	SLC1A4 (ENSCWAG00000015836) #37	CEP68 (ENSCWAG00000015895)	RAB1A (ENSCWAG00000016000)
Pig	MODERN SPECIES	11	PAPOLG (ENSSSCG00000008389) #7	REL (ENSSSCG00000008388) #8	PUS10 (ENSSSCG00000008385) #10	ENSSSCG00000062269	ENSSSCG00000053455	SANBR (ENSSSCG00000008386) #12	C2orf74 (ENSSSCG00000008384) #13	ENSSSCG00000008383 #15	ENSSSCG00000047643	USP34 (ENSSSCG00000008382) #16	XPO1 (ENSSSCG00000028228) #17	ENSSSCG00000038591	FAM161A (ENSSSCG00000008378) #18	CCT4 (ENSSSCG00000008377) #19	COMMD1 (ENSSSCG00000008376) #20	B3GNT2 (ENSSSCG00000008374) #22	ENSSSCG00000028518	TMEM17 (ENSSSCG00000026713) #23	EHBP1 (ENSSSCG00000008372) #24	OTX1 (ENSSSCG00000037564) #25	ENSSSCG00000030195	WDPCP (ENSSSCG00000057114) #26	MDH1 (ENSSSCG00000025751) #27	UGP2 (ENSSSCG00000008368) #30	VPS54 (ENSSSCG00000027509) #31	PELI1 (ENSSSCG00000028947) #32	LGALSL (ENSSSCG00000030005) #33	AFTPH (ENSSSCG00000008363) #34	SERTAD2 (ENSSSCG00000037002) #36	SLC1A4 (ENSSSCG00000028282) #37	CEP68 (ENSSSCG00000008360)
Artiodactyla_a	ANCESTRAL SPECIES	15	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Camelidae	ANCESTRAL SPECIES	12	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Alpaca	MODERN SPECIES	1898													FAM161A (ENSVPAG00000012466) #18	CCT4 (ENSVPAG00000012467) #19	COMMD1 (ENSVPAG00000012468) #20	B3GNT2 (ENSVPAG00000012470) #22	TMEM17 (ENSVPAG00000012471) #23	EHBP1 (ENSVPAG00000012472) #24	WDPCP (ENSVPAG00000012475) #26	MDH1 (ENSVPAG00000012476) #27	UGP2 (ENSVPAG00000012477) #30	VPS54 (ENSVPAG00000012479) #31	PELI1 (ENSVPAG00000012484) #32
Arabian camel	MODERN SPECIES	6	FANCL (ENSCDRG00005003551)	BCL11A (ENSCDRG00005003770)	PAPOLG (ENSCDRG00005003794) #7	REL (ENSCDRG00005003849) #8	PUS10 (ENSCDRG00005003895) #10	PEX13 (ENSCDRG00005003948) #11	SANBR (ENSCDRG00005004059) #12	ENSCDRG00005004233 #13	ENSCDRG00005004251 #15	ENSCDRG00005004262 #15	USP34 (ENSCDRG00005004329) #16	XPO1 (ENSCDRG00005004581) #17	FAM161A (ENSCDRG00005004663) #18	CCT4 (ENSCDRG00005004760) #19	COMMD1 (ENSCDRG00005004907) #20	B3GNT2 (ENSCDRG00005004917) #22	TMEM17 (ENSCDRG00005004930) #23	ENSCDRG00005004963	EHBP1 (ENSCDRG00005004989) #24	OTX1 (ENSCDRG00005005204) #25	WDPCP (ENSCDRG00005005228) #26	MDH1 (ENSCDRG00005005489) #27	UGP2 (ENSCDRG00005005735) #30	VPS54 (ENSCDRG00005005842) #31	PELI1 (ENSCDRG00005006069) #32	LGALSL (ENSCDRG00005006106) #33	AFTPH (ENSCDRG00005006174) #34	SLC1A4 (ENSCDRG00005006273) #37	CEP68 (ENSCDRG00005006344)	RAB1A (ENSCDRG00005006403)	ACTR2 (ENSCDRG00005006571)
Artiodactyla_b	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Cetacea	ANCESTRAL SPECIES	16	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B.i #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Odontoceti	ANCESTRAL SPECIES	15	ENSGT00390000005537	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Odontoceti_a	ANCESTRAL SPECIES	12	ENSGT00390000005537	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.l #27	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Odontoceti_b	ANCESTRAL SPECIES	15	ENSGT00390000005537	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.l #27	ENSGT00940000168989	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Monodontidae	ANCESTRAL SPECIES	13	ENSGT00390000009320.ab.a.b	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000002190.a.a	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00950000182802.A.ab.a.a.a.a.b.b.a	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.l #27	ENSGT00390000002738.a.e.a	ENSGT00940000153464.B.i #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Narwhal	MODERN SPECIES	305	ENSMMNG00015009561	BCL11A (ENSMMNG00015009533)	PAPOLG (ENSMMNG00015009492) #7	REL (ENSMMNG00015009469) #8	PUS10 (ENSMMNG00015009444) #10	PEX13 (ENSMMNG00015009420) #11	SANBR (ENSMMNG00015009404) #12	ENSMMNG00015009388	C2orf74 (ENSMMNG00015009383) #13	ENSMMNG00015009370 #15	USP34 (ENSMMNG00015009324) #16	XPO1 (ENSMMNG00015009286) #17	FAM161A (ENSMMNG00015009266) #18	CCT4 (ENSMMNG00015009244) #19	COMMD1 (ENSMMNG00015009232) #20	B3GNT2 (ENSMMNG00015009227) #22	TMEM17 (ENSMMNG00015009216) #23	ENSMMNG00015009209	EHBP1 (ENSMMNG00015009174) #24	OTX1 (ENSMMNG00015009119) #25	WDPCP (ENSMMNG00015009094) #26	ENSMMNG00015009066 #27	PHPT1 (ENSMMNG00015009040)	ENSMMNG00015009005 #30	VPS54 (ENSMMNG00015016195) #31	PELI1 (ENSMMNG00015016144) #32	LGALSL (ENSMMNG00015016100) #33	AFTPH (ENSMMNG00015016029) #34	SERTAD2 (ENSMMNG00015016005) #36	SLC1A4 (ENSMMNG00015015960) #37	CEP68 (ENSMMNG00015015909)
Beluga whale	MODERN SPECIES	42	ENSDLEG00000018049	BCL11A (ENSDLEG00000018036)	PAPOLG (ENSDLEG00000016366) #7	REL (ENSDLEG00000016202) #8	PUS10 (ENSDLEG00000016154) #10	PEX13 (ENSDLEG00000016146) #11	SANBR (ENSDLEG00000015757) #12	ENSDLEG00000015718	AHSA2 (ENSDLEG00000015689) #15	USP34 (ENSDLEG00000014462) #16	XPO1 (ENSDLEG00000014180) #17	ENSDLEG00000014158 #17	FAM161A (ENSDLEG00000014083) #18	CCT4 (ENSDLEG00000014042) #19	COMMD1 (ENSDLEG00000014033) #20	B3GNT2 (ENSDLEG00000014023) #22	TMEM17 (ENSDLEG00000014013) #23	ENSDLEG00000014005	EHBP1 (ENSDLEG00000013833) #24	OTX1 (ENSDLEG00000013795) #25	WDPCP (ENSDLEG00000013723) #26	MDH1 (ENSDLEG00000013685) #27	ENSDLEG00000013659	UGP2 (ENSDLEG00000013637) #30	ENSDLEG00000013630	VPS54 (ENSDLEG00000013588) #31	PELI1 (ENSDLEG00000013564) #32	LGALSL (ENSDLEG00000013531) #33	AFTPH (ENSDLEG00000013504) #34	SERTAD2 (ENSDLEG00000013497) #36	SLC1A4 (ENSDLEG00000013482) #37
Vaquita	MODERN SPECIES	4	ENSPSNG00000012495	BCL11A (ENSPSNG00000012577)	PAPOLG (ENSPSNG00000012886) #7	REL (ENSPSNG00000012951) #8	PUS10 (ENSPSNG00000012999) #10	PEX13 (ENSPSNG00000013226) #11	SANBR (ENSPSNG00000013337) #12	C2orf74 (ENSPSNG00000013441) #13	ENSPSNG00000013561 #15	USP34 (ENSPSNG00000013671) #16	XPO1 (ENSPSNG00000013822) #17	FAM161A (ENSPSNG00000013947) #18	CCT4 (ENSPSNG00000014061) #19	COMMD1 (ENSPSNG00000014183) #20	ENSPSNG00000014227	B3GNT2 (ENSPSNG00000014249) #22	TMEM17 (ENSPSNG00000014288) #23	ENSPSNG00000014346	EHBP1 (ENSPSNG00000014468) #24	OTX1 (ENSPSNG00000014688) #25	WDPCP (ENSPSNG00000014770) #26	ENSPSNG00000015180	MDH1 (ENSPSNG00000015270) #27	ENSPSNG00000015479	VPS54 (ENSPSNG00000015574) #31	PELI1 (ENSPSNG00000016122) #32	LGALSL (ENSPSNG00000016184) #33	AFTPH (ENSPSNG00000016250) #34	SERTAD2 (ENSPSNG00000016327) #36	SLC1A4 (ENSPSNG00000016415) #37	CEP68 (ENSPSNG00000016545)
Dolphin	MODERN SPECIES	6787																B3GNT2 (ENSTTRG00000006120) #22
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	3	ENSPCTG00005005243	BCL11A (ENSPCTG00005005291)	PAPOLG (ENSPCTG00005005387) #7	REL (ENSPCTG00005005467) #8	PUS10 (ENSPCTG00005005487) #10	PEX13 (ENSPCTG00005005540) #11	KIAA1841 (ENSPCTG00005005619) #12	ENSPCTG00005005788	C2orf74 (ENSPCTG00005005817) #13	ENSPCTG00005005896 #15	USP34 (ENSPCTG00005005959) #16	XPO1 (ENSPCTG00005006261) #17	FAM161A (ENSPCTG00005006353) #18	CCT4 (ENSPCTG00005006446) #19	COMMD1 (ENSPCTG00005006502) #20	B3GNT2 (ENSPCTG00005006518) #22	TMEM17 (ENSPCTG00005006531) #23	EHBP1 (ENSPCTG00005006603) #24	OTX1 (ENSPCTG00005006769) #25	WDPCP (ENSPCTG00005006829) #26	MDH1 (ENSPCTG00005007119) #27	ENSPCTG00005007304	UGP2 (ENSPCTG00005007338) #30	VPS54 (ENSPCTG00005007443) #31	PELI1 (ENSPCTG00005007650) #32	ENSPCTG00005007660	LGALSL (ENSPCTG00005007670) #33	AFTPH (ENSPCTG00005007713) #34	SERTAD2 (ENSPCTG00005007784) #36	ENSPCTG00005007798 #37	CEP68 (ENSPCTG00005007824)
Sperm whale	MODERN SPECIES	19	ENSPCTG00005010219	ELOVL7 (ENSPCTG00005010318)	ERCC8 (ENSPCTG00005010440)	NDUFAF2 (ENSPCTG00005010591)	ENSPCTG00005010642	SMIM15 (ENSPCTG00005010661)	ZSWIM6 (ENSPCTG00005010676)	KIF2A (ENSPCTG00005010833)	DIMT1 (ENSPCTG00005010923)	IPO11 (ENSPCTG00005011053)	ENSPCTG00005011384	ENSPCTG00005011421	ENSPCTG00005011444	ENSPCTG00005011501	HTR1A (ENSPCTG00005011540)	ENSPCTG00005011564 #22	RNF180 (ENSPCTG00005011581)	RGS7BP (ENSPCTG00005011710)	ENSPCTG00005011774	SHISAL2B (ENSPCTG00005011811)	SREK1IP1 (ENSPCTG00005011865)	CWC27 (ENSPCTG00005011894)	ADAMTS6 (ENSPCTG00005011980)	CENPK (ENSPCTG00005012024)	PPWD1 (ENSPCTG00005012126)	TRIM23 (ENSPCTG00005012189)	ENSPCTG00005012421	TRAPPC13 (ENSPCTG00005012479)	SGTB (ENSPCTG00005012588)	NLN (ENSPCTG00005012660)	ERBIN (ENSPCTG00005012764)
Blue whale	MODERN SPECIES	4	FANCL (ENSBMSG00010018794)	BCL11A (ENSBMSG00010018702)	PAPOLG (ENSBMSG00010018654) #7	REL (ENSBMSG00010018616) #8	PUS10 (ENSBMSG00010018581) #10	PEX13 (ENSBMSG00010018542) #11	SANBR (ENSBMSG00010018500) #12	C2orf74 (ENSBMSG00010018456) #13	ENSBMSG00010018430 #15	XPO1 (ENSBMSG00010017484) #17	ENSBMSG00010017465	ENSBMSG00010017432 #18	CCT4 (ENSBMSG00010017396) #19	COMMD1 (ENSBMSG00010017362) #20	ENSBMSG00010017350	B3GNT2 (ENSBMSG00010017335) #22	TMEM17 (ENSBMSG00010017316) #23	EHBP1 (ENSBMSG00010016917) #24	OTX1 (ENSBMSG00010016810) #25	WDPCP (ENSBMSG00010016471) #26	MDH1 (ENSBMSG00010016335) #27	ENSBMSG00010016142 #30	VPS54 (ENSBMSG00010015929) #31	PELI1 (ENSBMSG00010015886) #32	LGALSL (ENSBMSG00010015854) #33	ENSBMSG00010015828	AFTPH (ENSBMSG00010015789) #34	SERTAD2 (ENSBMSG00010015761) #36	ENSBMSG00010015739 #37	CEP68 (ENSBMSG00010015630)	RAB1A (ENSBMSG00010015536)
Pecora	ANCESTRAL SPECIES	5	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000017515.o.a	ENSGT00940000154909	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00390000009268.db.b	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Percora_a	ANCESTRAL SPECIES	13	ENSGT01030000234543.A.a	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000017515.o.a	ENSGT00940000154909	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00390000009268.db.b	ENSGT00960000190232	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Bovidae	ANCESTRAL SPECIES	5	ENSGT00940000161705	ENSGT01030000234543.A.a	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000017515.o.a	ENSGT00940000154909	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00960000190232	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Caprinae	ANCESTRAL SPECIES	9	ENSGT00940000154761	ENSGT00940000156351	ENSGT00940000161705	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000018141.i.b.b.a.a	ENSGT00940000154909	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00960000190232	ENSGT00940000157824 #18	ENSGT00550000074956.w #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.i #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337.h #33	ENSGT00940000154186.a #34	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556	ENSGT00910000147214
Goat	MODERN SPECIES	2	ENSCHIG00000023171	ENSCHIG00000014658	ENSCHIG00000025075	LRRTM4 (ENSCHIG00000016508)	ENSCHIG00000025227	ENSCHIG00000008786	ENSCHIG00000025266	C2orf74 (ENSCHIG00000015008) #13	ENSCHIG00000022308 #15	USP34 (ENSCHIG00000015071) #16	XPO1 (ENSCHIG00000018132) #17	ENSCHIG00000024725	FAM161A (ENSCHIG00000013966) #18	ENSCHIG00000014125 #19	COMMD1 (ENSCHIG00000017790) #20	B3GNT2 (ENSCHIG00000009561) #22	TMEM17 (ENSCHIG00000012499) #23	EHBP1 (ENSCHIG00000013762) #24	OTX1 (ENSCHIG00000017955) #25	WDPCP (ENSCHIG00000018963) #26	ENSCHIG00000015525 #27	UGP2 (ENSCHIG00000021810) #30	VPS54 (ENSCHIG00000010990) #31	ENSCHIG00000003100	PELI1 (ENSCHIG00000022027) #32	LGALSL (ENSCHIG00000026638) #33	AFTPH (ENSCHIG00000009404) #34	ENSCHIG00000007620	SLC1A4 (ENSCHIG00000025336) #37	CEP68 (ENSCHIG00000025433)	RAB1A (ENSCHIG00000014060)
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020002295	ENSOARG00020002288	ENSOARG00020002275	LRRTM4 (ENSOARG00020002254)	ENSOARG00020002231	ENSOARG00020002228	C2orf74 (ENSOARG00020002212) #13	ENSOARG00020002186 #15	USP34 (ENSOARG00020001682) #16	XPO1 (ENSOARG00020001587) #17	ENSOARG00020001558	ENSOARG00020001550	FAM161A (ENSOARG00020001502) #18	ENSOARG00020001479 #19	COMMD1 (ENSOARG00020001461) #20	B3GNT2 (ENSOARG00020001451) #22	TMEM17 (ENSOARG00020001441) #23	EHBP1 (ENSOARG00020001291) #24	OTX1 (ENSOARG00020001249) #25	WDPCP (ENSOARG00020001233) #26	MDH1 (ENSOARG00020001156) #27	UGP2 (ENSOARG00020001100) #30	VPS54 (ENSOARG00020000984) #31	ENSOARG00020000952	PELI1 (ENSOARG00020000937) #32	LGALSL (ENSOARG00020000922) #33	SERTAD2 (ENSOARG00020000894) #36	ENSOARG00020000886	SLC1A4 (ENSOARG00020000870) #37	RAB1A (ENSOARG00020000781)	ENSOARG00020000747
Bovinae	ANCESTRAL SPECIES	4	ENSGT01030000234543.A.a	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000017515.o.a	ENSGT00940000154909	ENSGT00940000157562.f	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00390000002517.a.b.a.g.a.b	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Bos	ANCESTRAL SPECIES	5	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000017515.o.a	ENSGT00940000154909	ENSGT00940000157562.f	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00390000002517.a.b.a.g.a.b	ENSGT00940000168009	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00390000011179.o.a	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Bos_a	ANCESTRAL SPECIES	6	ENSGT00940000161705	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000017515.o.a	ENSGT00940000154909	ENSGT00940000157562.f	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000153117.B.c.a	ENSGT00940000168009	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00390000011179.o.a	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Domestic yak	MODERN SPECIES	28	LRRTM1 (ENSBGRG00000007126)	ENSBGRG00000007147	ENSBGRG00000007342	ENSBGRG00000007421	ENSBGRG00000007589	LRRTM4 (ENSBGRG00000007615)	ENSBGRG00000007723	C2orf74 (ENSBGRG00000007770) #13	ENSBGRG00000007859 #15	USP34 (ENSBGRG00000007924) #16	XPO1 (ENSBGRG00000008764) #17	ENSBGRG00000008927	FAM161A (ENSBGRG00000008971) #18	CCT4 (ENSBGRG00000009171) #19	COMMD1 (ENSBGRG00000009496) #20	B3GNT2 (ENSBGRG00000009630) #22	EHBP1 (ENSBGRG00000009676) #24	TMEM17 (ENSBGRG00000009894) #23	ENSBGRG00000009929	OTX1 (ENSBGRG00000009943) #25	WDPCP (ENSBGRG00000009982) #26	MRPS24 (ENSBGRG00000010129)	MDH1 (ENSBGRG00000010198) #27	ENSBGRG00000010353	UGP2 (ENSBGRG00000010367) #30	VPS54 (ENSBGRG00000010687) #31	PELI1 (ENSBGRG00000011236) #32	ENSBGRG00000011374 #33	AFTPH (ENSBGRG00000011500) #34	SERTAD2 (ENSBGRG00000011678) #36	SLC1A4 (ENSBGRG00000011713) #37
Wild yak	MODERN SPECIES	2591																B3GNT2 (ENSBMUG00000001577) #22	EHBP1 (ENSBMUG00000001885) #24	TMEM17 (ENSBMUG00000001998) #23	OTX1 (ENSBMUG00000002002) #25
Bos_b	ANCESTRAL SPECIES	16	ENSGT00940000154447.j.b	ENSGT00940000154447.j.a	ENSGT00390000017515.o.a	ENSGT00940000154909	ENSGT00940000157562.f	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00390000002517.a.b.a.g.a.b	ENSGT00940000168009	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00390000011179.o.a	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Hybrid Bos Indicus	MODERN SPECIES	2	LRRTM4 (ENSBIXG00005010829)	ENSBIXG00005010786	C2orf74 (ENSBIXG00005010754) #13	ENSBIXG00005010697 #15	USP34 (ENSBIXG00005010569) #16	ENSBIXG00005009625	XPO1 (ENSBIXG00005009599) #17	ENSBIXG00005000538	ENSBIXG00005009556	ENSBIXG00005009538	ENSBIXG00005009523	FAM161A (ENSBIXG00005009510) #18	ENSBIXG00005006710	CCT4 (ENSBIXG00005009489) #19	COMMD1 (ENSBIXG00005009417) #20	B3GNT2 (ENSBIXG00005005908) #22	TMEM17 (ENSBIXG00005000490) #23	EHBP1 (ENSBIXG00005000484) #24	ENSBIXG00005005799	OTX1 (ENSBIXG00005009282) #25	WDPCP (ENSBIXG00005009244) #26	MRPS24 (ENSBIXG00005000425)	MDH1 (ENSBIXG00005009206) #27	UGP2 (ENSBIXG00005009159) #30	VPS54 (ENSBIXG00005009062) #31	PELI1 (ENSBIXG00005008978) #32	ENSBIXG00005008944 #33	AFTPH (ENSBIXG00005008912) #34	SERTAD2 (ENSBIXG00005008870) #36	RAB1A (ENSBIXG00005000282)	ENSBIXG00005008797
Cow	MODERN SPECIES	2	REG3G (ENSBTAG00000007135)	REG3A (ENSBTAG00000011314)	ENSBTAG00000000168	LRRTM4 (ENSBTAG00000000374)	C11H2orf74 (ENSBTAG00000047149) #13	AHSA2 (ENSBTAG00000006025) #15	USP34 (ENSBTAG00000006027) #16	XPO1 (ENSBTAG00000013254) #17	ENSBTAG00000048424	ENSBTAG00000039218	ENSBTAG00000051819	FAM161A (ENSBTAG00000009290) #18	ENSBTAG00000049111	CCT4 (ENSBTAG00000004531) #19	COMMD1 (ENSBTAG00000019867) #20	B3GNT2 (ENSBTAG00000018046) #22	TMEM17 (ENSBTAG00000000899) #23	EHBP1 (ENSBTAG00000044173) #24	OTX1 (ENSBTAG00000006760) #25	WDPCP (ENSBTAG00000005151) #26	ENSBTAG00000023318	MDH1 (ENSBTAG00000019295) #27	UGP2 (ENSBTAG00000000111) #30	VPS54 (ENSBTAG00000000115) #31	PELI1 (ENSBTAG00000020865) #32	ENSBTAG00000053585	LGALSL (ENSBTAG00000055296) #33	AFTPH (ENSBTAG00000009299) #34	SERTAD2 (ENSBTAG00000049341) #36	ENSBTAG00000050435	SLC1A4 (ENSBTAG00000007763) #37
American bison	MODERN SPECIES	3346	LRRTM1 (ENSBBBG00000008920)	ENSBBBG00000016570	ENSBBBG00000004079	ENSBBBG00000016512	LRRTM4 (ENSBBBG00000016488)	ENSBBBG00000016466	C2orf74 (ENSBBBG00000016460) #13	ENSBBBG00000016446 #15	USP34 (ENSBBBG00000004065) #16	XPO1 (ENSBBBG00000016353) #17	ENSBBBG00000016280	ENSBBBG00000016270	FAM161A (ENSBBBG00000016265) #18	CCT4 (ENSBBBG00000016241) #19	COMMD1 (ENSBBBG00000016189) #20	B3GNT2 (ENSBBBG00000000770) #22	ENSBBBG00000016179	TMEM17 (ENSBBBG00000016175) #23	EHBP1 (ENSBBBG00000016143) #24	OTX1 (ENSBBBG00000015949) #25	WDPCP (ENSBBBG00000015935) #26	MDH1 (ENSBBBG00000015910) #27	UGP2 (ENSBBBG00000015846) #30	VPS54 (ENSBBBG00000015810) #31	PELI1 (ENSBBBG00000015700) #32	LGALSL (ENSBBBG00000003917) #33	AFTPH (ENSBBBG00000015672) #34	SLC1A4 (ENSBBBG00000003906) #37	CEP68 (ENSBBBG00000015639)	RAB1A (ENSBBBG00000015620)	ENSBBBG00000003899
Siberian musk deer	MODERN SPECIES	240								ENSMMSG00000009275 #15	USP34 (ENSMMSG00000008868) #16	XPO1 (ENSMMSG00000008749) #17	ENSMMSG00000008648	ENSMMSG00000008623	FAM161A (ENSMMSG00000008531) #18	ENSMMSG00000008359 #19	COMMD1 (ENSMMSG00000008325) #20	B3GNT2 (ENSMMSG00000008312) #22	ENSMMSG00000008292	TMEM17 (ENSMMSG00000008258) #23	EHBP1 (ENSMMSG00000008127) #24	OTX1 (ENSMMSG00000008093) #25	WDPCP (ENSMMSG00000008007) #26	MDH1 (ENSMMSG00000007784) #27	UGP2 (ENSMMSG00000007620) #30	VPS54 (ENSMMSG00000007345) #31	PELI1 (ENSMMSG00000007255) #32	LGALSL (ENSMMSG00000007219) #33	AFTPH (ENSMMSG00000007162) #34	SERTAD2 (ENSMMSG00000007146) #36	ENSMMSG00000007124	SLC1A4 (ENSMMSG00000007010) #37	CEP68 (ENSMMSG00000006928)
Yarkand deer	MODERN SPECIES	2	CTNNA2 (ENSCHYG00000011228)	LRRTM1 (ENSCHYG00000011698)	ENSCHYG00000011728	ENSCHYG00000011811	ENSCHYG00000011927	LRRTM4 (ENSCHYG00000011968)	C2orf74 (ENSCHYG00000012074) #13	USP34 (ENSCHYG00000005246) #16	ENSCHYG00000005607 #15	XPO1 (ENSCHYG00000005634) #17	ENSCHYG00000005745	FAM161A (ENSCHYG00000005790) #18	ENSCHYG00000005899	CCT4 (ENSCHYG00000005956) #19	COMMD1 (ENSCHYG00000006201) #20	B3GNT2 (ENSCHYG00000006215) #22	TMEM17 (ENSCHYG00000006260) #23	EHBP1 (ENSCHYG00000006348) #24	OTX1 (ENSCHYG00000006734) #25	WDPCP (ENSCHYG00000006760) #26	ENSCHYG00000006867	MDH1 (ENSCHYG00000006887) #27	ENSCHYG00000007056	UGP2 (ENSCHYG00000007083) #30	VPS54 (ENSCHYG00000007200) #31	ENSCHYG00000007473	PELI1 (ENSCHYG00000007493) #32	ENSCHYG00000007544	LGALSL (ENSCHYG00000007576) #33	AFTPH (ENSCHYG00000007630) #34	ENSCHYG00000007734
Laurasiatheria_b	ANCESTRAL SPECIES	17	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Carnivora	ANCESTRAL SPECIES	19	ENSGT00950000185458	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Caniformia	ANCESTRAL SPECIES	18	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Caniformia_b	ANCESTRAL SPECIES	11	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Ursidae	ANCESTRAL SPECIES	9	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.p #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Ursus	ANCESTRAL SPECIES	20	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00990000206080	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00390000009819.a.a.o	ENSGT00530000063410.a.p #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Polar bear	MODERN SPECIES	223	PAPOLG (ENSUMAG00000019081) #7	REL (ENSUMAG00000019086) #8	PUS10 (ENSUMAG00000019094) #10	ENSUMAG00000019099	PEX13 (ENSUMAG00000019100) #11	SANBR (ENSUMAG00000019109) #12	C2orf74 (ENSUMAG00000019220) #13	ENSUMAG00000019225 #15	ENSUMAG00000019230 #15	USP34 (ENSUMAG00000019333) #16	XPO1 (ENSUMAG00000019859) #17	ENSUMAG00000019866	FAM161A (ENSUMAG00000019872) #18	CCT4 (ENSUMAG00000019983) #19	COMMD1 (ENSUMAG00000020922) #20	B3GNT2 (ENSUMAG00000020928) #22	TMEM17 (ENSUMAG00000020931) #23	EHBP1 (ENSUMAG00000020940) #24	ENSUMAG00000020944 #25	WDPCP (ENSUMAG00000020957) #26	ENSUMAG00000020964	MDH1 (ENSUMAG00000020965) #27	UGP2 (ENSUMAG00000020975) #30	VPS54 (ENSUMAG00000020982) #31	PELI1 (ENSUMAG00000021002) #32	LGALSL (ENSUMAG00000021007) #33	AFTPH (ENSUMAG00000021014) #34	ENSUMAG00000021019 #35	SLC1A4 (ENSUMAG00000021032) #37	CEP68 (ENSUMAG00000021035)	RAB1A (ENSUMAG00000021038)
American black bear	MODERN SPECIES	8121																B3GNT2 (ENSUAMG00000014774) #22
Giant Panda	MODERN SPECIES	14	VRK2 (ENSAMEG00000015844)	FANCL (ENSAMEG00000015826)	BCL11A (ENSAMEG00000015813)	PAPOLG (ENSAMEG00000018227) #7	REL (ENSAMEG00000018236) #8	PUS10 (ENSAMEG00000018240) #10	PEX13 (ENSAMEG00000018243) #11	SANBR (ENSAMEG00000018245) #12	C2orf74 (ENSAMEG00000018247) #13	ENSAMEG00000018248 #15	USP34 (ENSAMEG00000018249) #16	XPO1 (ENSAMEG00000003460) #17	FAM161A (ENSAMEG00000003523) #18	CCT4 (ENSAMEG00000003530) #19	COMMD1 (ENSAMEG00000008249) #20	B3GNT2 (ENSAMEG00000005508) #22	TMEM17 (ENSAMEG00000005503) #23	EHBP1 (ENSAMEG00000005488) #24	OTX1 (ENSAMEG00000026277) #25	WDPCP (ENSAMEG00000005449) #26	MDH1 (ENSAMEG00000005414) #27	ENSAMEG00000027202	PELI1 (ENSAMEG00000001167) #32	LGALSL (ENSAMEG00000027975) #33	AFTPH (ENSAMEG00000001080) #34	SERTAD2 (ENSAMEG00000028964) #36	SLC1A4 (ENSAMEG00000001092) #37	CEP68 (ENSAMEG00000001121)	RAB1A (ENSAMEG00000026261)	ENSAMEG00000031136	ENSAMEG00000024763
Mustelinae	ANCESTRAL SPECIES	16		ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
American mink	DUPLICATION
American mink	MODERN SPECIES	109	FANCL (ENSNVIG00000012633)	BCL11A (ENSNVIG00000012490)	PAPOLG (ENSNVIG00000012455) #7	REL (ENSNVIG00000012402) #8	PUS10 (ENSNVIG00000012384) #10	PEX13 (ENSNVIG00000012376) #11	K1841 (ENSNVIG00000012252) #12	C2orf74 (ENSNVIG00000012228) #13	ENSNVIG00000012222	ENSNVIG00000012217	USP34 (ENSNVIG00000012085) #16	XPO1 (ENSNVIG00000011993) #17	F161A (ENSNVIG00000011983) #18	CCT4 (ENSNVIG00000011941) #19	COMMD1 (ENSNVIG00000011903) #20	ENSNVIG00000011888 #22	TMEM17 (ENSNVIG00000011866) #23	EHBP1 (ENSNVIG00000011813) #24	OTX1 (ENSNVIG00000011785) #25
American mink	MODERN SPECIES	431																ENSNVIG00000008029 #22
Ferret	MODERN SPECIES	169	ENSMPUG00000005122	ENSMPUG00000005129	ENSMPUG00000005140	ENSMPUG00000005161	PAPOLG (ENSMPUG00000005165) #7	REL (ENSMPUG00000005180) #8	PUS10 (ENSMPUG00000005185) #10	ENSMPUG00000005228 #11	SANBR (ENSMPUG00000005235) #12	ENSMPUG00000005244 #13	USP34 (ENSMPUG00000005248) #16	XPO1 (ENSMPUG00000005560) #17	FAM161A (ENSMPUG00000005585) #18	CCT4 (ENSMPUG00000005615) #19	COMMD1 (ENSMPUG00000005842) #20	B3GNT2 (ENSMPUG00000018818) #22	ENSMPUG00000005847	TMEM17 (ENSMPUG00000005851) #23	ENSMPUG00000005871	EHBP1 (ENSMPUG00000005877) #24	OTX1 (ENSMPUG00000005901) #25	ENSMPUG00000005912	WDPCP (ENSMPUG00000005918) #26	MDH1 (ENSMPUG00000005929) #27	ENSMPUG00000005940	UGP2 (ENSMPUG00000005966) #30	VPS54 (ENSMPUG00000006057) #31	PELI1 (ENSMPUG00000006068) #32	ENSMPUG00000006072	LGALSL (ENSMPUG00000006075) #33	AFTPH (ENSMPUG00000006081) #34
Canidae	ANCESTRAL SPECIES	10	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556	ENSGT00910000147398
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00940000154546	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00390000017004.a.a.q.a
Dog	MODERN SPECIES	1	VRK2 (ENSCAFG00845012500)	FANCL (ENSCAFG00845012667)	BCL11A (ENSCAFG00845012955)	ENSCAFG00845013045	PAPOLG (ENSCAFG00845013090) #7	REL (ENSCAFG00845013250) #8	PUS10 (ENSCAFG00845013311) #10	PEX13 (ENSCAFG00845013355) #11	SANBR (ENSCAFG00845013376) #12	C2orf74 (ENSCAFG00845013418) #13	USP34 (ENSCAFG00845013490) #16	XPO1 (ENSCAFG00845016081) #17	FAM161A (ENSCAFG00845016188) #18	CCT4 (ENSCAFG00845016454) #19	COMMD1 (ENSCAFG00845016604) #20	B3GNT2 (ENSCAFG00845016685) #22	TMEM17 (ENSCAFG00845016745) #23	EHBP1 (ENSCAFG00845017216) #24	OTX1 (ENSCAFG00845018084) #25	WDPCP (ENSCAFG00845018266) #26	ENSCAFG00845018841	ENSCAFG00845018885	MDH1 (ENSCAFG00845019026) #27	UGP2 (ENSCAFG00845019476) #30	VPS54 (ENSCAFG00845019815) #31	PELI1 (ENSCAFG00845020350) #32	LGALSL (ENSCAFG00845020462) #33	ENSCAFG00845020543	AFTPH (ENSCAFG00845020600) #34	SLC1A4 (ENSCAFG00845020925) #37	CEP68 (ENSCAFG00845021026)
Dingo	MODERN SPECIES	307	BCL11A (ENSCAFG00020026853)	ENSCAFG00020026854	PAPOLG (ENSCAFG00020026859) #7	REL (ENSCAFG00020026871) #8	ENSCAFG00020026873 #10	ENSCAFG00020026876	PEX13 (ENSCAFG00020026877) #11	SANBR (ENSCAFG00020026879) #12	C2orf74 (ENSCAFG00020026882) #13	USP34 (ENSCAFG00020026887) #16	ENSCAFG00020026910 #17	ENSCAFG00020026913 #17	FAM161A (ENSCAFG00020026916) #18	ENSCAFG00020026918 #19	COMMD1 (ENSCAFG00020026920) #20	B3GNT2 (ENSCAFG00020026921) #22	TMEM17 (ENSCAFG00020026923) #23	EHBP1 (ENSCAFG00020026924) #24	OTX1 (ENSCAFG00020026926) #25	WDPCP (ENSCAFG00020026927) #26	ENSCAFG00020026930	ENSCAFG00020026931	MDH1 (ENSCAFG00020026933) #27	UGP2 (ENSCAFG00020026936) #30	VPS54 (ENSCAFG00020026938) #31	PELI1 (ENSCAFG00020026939) #32	LGALSL (ENSCAFG00020026947) #33	AFTPH (ENSCAFG00020026953) #34	SLC1A4 (ENSCAFG00020026962) #37	CEP68 (ENSCAFG00020026969)	RAB1A (ENSCAFG00020026971)
Red fox	MODERN SPECIES	10	VRK2 (ENSVVUG00000010175)	FANCL (ENSVVUG00000010209)	BCL11A (ENSVVUG00000010330)	ENSVVUG00000010337	PAPOLG (ENSVVUG00000010344) #7	REL (ENSVVUG00000010372) #8	PUS10 (ENSVVUG00000010405) #10	PEX13 (ENSVVUG00000010422) #11	SANBR (ENSVVUG00000010434) #12	C2orf74 (ENSVVUG00000010534) #13	USP34 (ENSVVUG00000010616) #16	XPO1 (ENSVVUG00000012009) #17	FAM161A (ENSVVUG00000012026) #18	CCT4 (ENSVVUG00000012040) #19	COMMD1 (ENSVVUG00000012078) #20	B3GNT2 (ENSVVUG00000012079) #22	TMEM17 (ENSVVUG00000012092) #23	EHBP1 (ENSVVUG00000012144) #24	OTX1 (ENSVVUG00000012226) #25	ENSVVUG00000012230	ENSVVUG00000012232	WDPCP (ENSVVUG00000012239) #26	ENSVVUG00000012256	ENSVVUG00000012263	MDH1 (ENSVVUG00000012288) #27	UGP2 (ENSVVUG00000012309) #30	VPS54 (ENSVVUG00000012313) #31	PELI1 (ENSVVUG00000012332) #32	ENSVVUG00000012340	LGALSL (ENSVVUG00000012353) #33	AFTPH (ENSVVUG00000012375) #34
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000156467 #7	ENSGT00390000015489.q.b.a	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000166485.b	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Panthera	ANCESTRAL SPECIES	2	ENSGT00940000156467 #7	ENSGT00390000015489.q.b.a	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000166485.b	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337.f #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00940000156467 #7	ENSGT00390000015489.q.b.a	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000166485.b	ENSGT00940000157824 #18	ENSGT01000000221758	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337.f #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
lion	MODERN SPECIES	3	ENSPLOG00000001190	REL (ENSPLOG00000001176) #8	PUS10 (ENSPLOG00000001124) #10	PEX13 (ENSPLOG00000001084) #11	SANBR (ENSPLOG00000001051) #12	C2orf74 (ENSPLOG00000001023) #13	ENSPLOG00000001011 #15	USP34 (ENSPLOG00000000913) #16	XPO1 (ENSPLOG00000000831) #17	ENSPLOG00000000810	ENSPLOG00000000799 #18	ENSPLOG00000000788	CCT4 (ENSPLOG00000000744) #19	ENSPLOG00000000693	COMMD1 (ENSPLOG00000000685) #20	B3GNT2 (ENSPLOG00000000672) #22	TMEM17 (ENSPLOG00000000647) #23	EHBP1 (ENSPLOG00000000545) #24	OTX1 (ENSPLOG00000000484) #25	WDPCP (ENSPLOG00000000468) #26	MDH1 (ENSPLOG00000000419) #27	UGP2 (ENSPLOG00000000363) #30	VPS54 (ENSPLOG00000000305) #31	PELI1 (ENSPLOG00000000230) #32	LGALSL (ENSPLOG00000000160) #33	AFTPH (ENSPLOG00000000129) #34	SERTAD2 (ENSPLOG00000000111) #36	SLC1A4 (ENSPLOG00000015581) #37	CEP68 (ENSPLOG00000015547)	RAB1A (ENSPLOG00000015420)	ENSPLOG00000015344
leopard	MODERN SPECIES		BCL11A (ENSPPRG00000023125)	PAPOLG (ENSPPRG00000023250) #7	REL (ENSPPRG00000023390) #8	PUS10 (ENSPPRG00000023600) #10	PEX13 (ENSPPRG00000023891) #11	SANBR (ENSPPRG00000023999) #12	C2orf74 (ENSPPRG00000024210) #13	ENSPPRG00000024227 #15	ENSPPRG00000024371 #15	USP34 (ENSPPRG00000024570) #16	XPO1 (ENSPPRG00000024625) #17	ENSPPRG00000024662	FAM161A (ENSPPRG00000024716) #18	CCT4 (ENSPPRG00000024738) #19	COMMD1 (ENSPPRG00000024784) #20	B3GNT2 (ENSPPRG00000020752) #22	ENSPPRG00000024813	TMEM17 (ENSPPRG00000024820) #23	EHBP1 (ENSPPRG00000024840) #24	OTX1 (ENSPPRG00000024867) #25	WDPCP (ENSPPRG00000024890) #26	ENSPPRG00000024948 #27	UGP2 (ENSPPRG00000024974) #30	VPS54 (ENSPPRG00000025012) #31	PELI1 (ENSPPRG00000025026) #32	ENSPPRG00000025036 #33	AFTPH (ENSPPRG00000025039) #34	ENSPPRG00000025068 #35	SERTAD2 (ENSPPRG00000020703) #36	SLC1A4 (ENSPPRG00000025070) #37	CEP68 (ENSPPRG00000025073)
Tiger	MODERN SPECIES	56	FANCL (ENSPTIG00000020057)	BCL11A (ENSPTIG00000018807)	PAPOLG (ENSPTIG00000018126) #7	REL (ENSPTIG00000016976) #8	PUS10 (ENSPTIG00000015705) #10	PEX13 (ENSPTIG00000015161) #11	SANBR (ENSPTIG00000011564) #12	C2orf74 (ENSPTIG00000011235) #13	ENSPTIG00000010228 #15	ENSPTIG00000008945 #15	USP34 (ENSPTIG00000016516) #16	XPO1 (ENSPTIG00000012259) #17	FAM161A (ENSPTIG00000011182) #18	CCT4 (ENSPTIG00000009450) #19	COMMD1 (ENSPTIG00000008560) #20	B3GNT2 (ENSPTIG00000006426) #22	TMEM17 (ENSPTIG00000007396) #23	EHBP1 (ENSPTIG00000005411) #24	OTX1 (ENSPTIG00000021186) #25	WDPCP (ENSPTIG00000018461) #26	MDH1 (ENSPTIG00000015287) #27	UGP2 (ENSPTIG00000012159) #30	VPS54 (ENSPTIG00000007451) #31	PELI1 (ENSPTIG00000005767) #32	ENSPTIG00000003080 #33	ENSPTIG00000000654 #35	AFTPH (ENSPTIG00000016879) #34	SERTAD2 (ENSPTIG00000006044) #36	ENSPTIG00000016054 #37	CEP68 (ENSPTIG00000014965)	RAB1A (ENSPTIG00000013471)
Cat	MODERN SPECIES	2	BCL11A (ENSFCAG00000027154)	PAPOLG (ENSFCAG00000026126) #7	ENSFCAG00000045350	REL (ENSFCAG00000008018) #8	PUS10 (ENSFCAG00000008019) #10	ENSFCAG00000028969 #11	SANBR (ENSFCAG00000014456) #12	CA3H2orf74 (ENSFCAG00000019120) #13	ENSFCAG00000009473 #15	USP34 (ENSFCAG00000009478) #16	XPO1 (ENSFCAG00000002702) #17	ENSFCAG00000049089	FAM161A (ENSFCAG00000011118) #18	CCT4 (ENSFCAG00000024322) #19	COMMD1 (ENSFCAG00000027737) #20	B3GNT2 (ENSFCAG00000009061) #22	TMEM17 (ENSFCAG00000046240) #23	EHBP1 (ENSFCAG00000026831) #24	OTX1 (ENSFCAG00000044742) #25	WDPCP (ENSFCAG00000006657) #26	MDH1 (ENSFCAG00000024183) #27	UGP2 (ENSFCAG00000018580) #30	VPS54 (ENSFCAG00000008259) #31	PELI1 (ENSFCAG00000030163) #32	ENSFCAG00000045546 #33	AFTPH (ENSFCAG00000028719) #34	SERTAD2 (ENSFCAG00000002492) #36	SLC1A4 (ENSFCAG00000001506) #37	CEP68 (ENSFCAG00000030849)	RAB1A (ENSFCAG00000002536)	ENSFCAG00000014868
Laurasiatheria_c	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Chiroptera	ANCESTRAL SPECIES	10	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Microchiroptera	ANCESTRAL SPECIES	14	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00950000185458	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Greater horseshoe bat	MODERN SPECIES	4	FANCL (ENSRFEG00010010286)	BCL11A (ENSRFEG00010010081)	ENSRFEG00010010050	PAPOLG (ENSRFEG00010009986) #7	REL (ENSRFEG00010009957) #8	PUS10 (ENSRFEG00010009923) #10	PEX13 (ENSRFEG00010009877) #11	SANBR (ENSRFEG00010009789) #12	C2orf74 (ENSRFEG00010009703) #13	ENSRFEG00010009602 #15	USP34 (ENSRFEG00010009538) #16	XPO1 (ENSRFEG00010009458) #17	FAM161A (ENSRFEG00010009411) #18	ENSRFEG00010009347 #19	COMMD1 (ENSRFEG00010009299) #20	B3GNT2 (ENSRFEG00010009289) #22	ENSRFEG00010009258	ENSRFEG00010009225	ENSRFEG00010009180	TMEM17 (ENSRFEG00010009150) #23	EHBP1 (ENSRFEG00010008993) #24	OTX1 (ENSRFEG00010008915) #25	WDPCP (ENSRFEG00010008801) #26	MDH1 (ENSRFEG00010008617) #27	UGP2 (ENSRFEG00010008438) #30	VPS54 (ENSRFEG00010008048) #31	PELI1 (ENSRFEG00010008007) #32	LGALSL (ENSRFEG00010007948) #33	AFTPH (ENSRFEG00010007890) #34	SERTAD2 (ENSRFEG00010007864) #36	SLC1A4 (ENSRFEG00010007793) #37
Microbat	MODERN SPECIES	943	ENSMLUG00000030390	ENSMLUG00000014903	PAPOLG (ENSMLUG00000009853) #7	REL (ENSMLUG00000007454) #8	PUS10 (ENSMLUG00000000082) #10	PEX13 (ENSMLUG00000025131) #11	SANBR (ENSMLUG00000007627) #12	C2orf74 (ENSMLUG00000027969) #13	ENSMLUG00000003408 #15	ENSMLUG00000027445	USP34 (ENSMLUG00000003414) #16	XPO1 (ENSMLUG00000010670) #17	FAM161A (ENSMLUG00000030514) #18	CCT4 (ENSMLUG00000016138) #19	ENSMLUG00000022697 #20	B3GNT2 (ENSMLUG00000009924) #22	ENSMLUG00000027762	EHBP1 (ENSMLUG00000002314) #24	OTX1 (ENSMLUG00000002330) #25	WDPCP (ENSMLUG00000002336) #26	MDH1 (ENSMLUG00000002352) #27	UGP2 (ENSMLUG00000003123) #30	VPS54 (ENSMLUG00000003130) #31	PELI1 (ENSMLUG00000003152) #32	ENSMLUG00000015944	LGALSL (ENSMLUG00000008001) #33	AFTPH (ENSMLUG00000008012) #34	SERTAD2 (ENSMLUG00000013854) #36	SLC1A4 (ENSMLUG00000002430) #37	CEP68 (ENSMLUG00000002435)	RAB1A (ENSMLUG00000009489)
Megabat	MODERN SPECIES	2201													FAM161A (ENSPVAG00000014704) #18	CCT4 (ENSPVAG00000014706) #19	COMMD1 (ENSPVAG00000014708) #20	B3GNT2 (ENSPVAG00000014709) #22
Equus	ANCESTRAL SPECIES	7	ENSGT00940000156983.a.a	ENSGT00800000125307	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT01090000263393	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958	ENSGT00940000154556
Horse	MODERN SPECIES	6	ENSECAG00000059857	PEX13 (ENSECAG00000019622)	SANBR (ENSECAG00000019995) #12	C15H2orf74 (ENSECAG00000013166) #13	ENSECAG00000005107 #15	USP34 (ENSECAG00000022272) #16	ENSECAG00000059157	ENSECAG00000044596	ENSECAG00000060044	ENSECAG00000059740	XPO1 (ENSECAG00000024920) #17	FAM161A (ENSECAG00000024614) #18	CCT4 (ENSECAG00000016982) #19	ENSECAG00000060047	COMMD1 (ENSECAG00000016963) #20	B3GNT2 (ENSECAG00000016959) #22	ENSECAG00000032544	TMEM17 (ENSECAG00000015697) #23	EHBP1 (ENSECAG00000009318) #24	OTX1 (ENSECAG00000024462) #25	MDH1 (ENSECAG00000010849) #27	WDPCP (ENSECAG00000019956) #26	UGP2 (ENSECAG00000016705) #30	VPS54 (ENSECAG00000022920) #31	PELI1 (ENSECAG00000021804) #32	LGALSL (ENSECAG00000018099) #33	AFTPH (ENSECAG00000012175) #34	SERTAD2 (ENSECAG00000040555) #36	SLC1A4 (ENSECAG00000011229) #37	CEP68 (ENSECAG00000009985)	RAB1A (ENSECAG00000009926)
Donkey	MODERN SPECIES	26	PAPOLG (ENSEASG00005002038) #7	REL (ENSEASG00005002043) #8	PUS10 (ENSEASG00005002058) #10	ENSEASG00005038092	SANBR (ENSEASG00005002083) #12	C2orf74 (ENSEASG00005002091) #13	ENSEASG00005002092 #15	USP34 (ENSEASG00005002220) #16	XPO1 (ENSEASG00005007223) #17	ENSEASG00005007225	FAM161A (ENSEASG00005007228) #18	CCT4 (ENSEASG00005007230) #19	COMMD1 (ENSEASG00005007231) #20	ENSEASG00005007233	ENSEASG00005007234	B3GNT2 (ENSEASG00005032411) #22	TMEM17 (ENSEASG00005031233) #23	EHBP1 (ENSEASG00005007241) #24	OTX1 (ENSEASG00005007243) #25	WDPCP (ENSEASG00005007245) #26	MDH1 (ENSEASG00005007262) #27	UGP2 (ENSEASG00005007264) #30	VPS54 (ENSEASG00005007268) #31	PELI1 (ENSEASG00005007279) #32	LGALSL (ENSEASG00005007283) #33	AFTPH (ENSEASG00005007290) #34	SERTAD2 (ENSEASG00005026993) #36	ENSEASG00005035148	SLC1A4 (ENSEASG00005007296) #37	CEP68 (ENSEASG00005007297)	RAB1A (ENSEASG00005034669)
Atlantogenata	ANCESTRAL SPECIES	241																ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23
Afrotheria	ANCESTRAL SPECIES	309																ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23
Afrotheria_a	ANCESTRAL SPECIES	36	ENSGT00940000157837	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22
Elephant	MODERN SPECIES	438	CCDC85A (ENSLAFG00000002154)	VRK2 (ENSLAFG00000012268)	BCL11A (ENSLAFG00000003101)	PAPOLG (ENSLAFG00000010404) #7	REL (ENSLAFG00000013507) #8	PUS10 (ENSLAFG00000010782) #10	PEX13 (ENSLAFG00000000830) #11	SANBR (ENSLAFG00000016305) #12	ENSLAFG00000020666 #13	USP34 (ENSLAFG00000016317) #16	XPO1 (ENSLAFG00000014553) #17	FAM161A (ENSLAFG00000029260) #18	CCT4 (ENSLAFG00000004344) #19	ENSLAFG00000030691 #20	ENSLAFG00000004349 #20	B3GNT2 (ENSLAFG00000002799) #22
Tenrec	MODERN SPECIES	17667																B3GNT2 (ENSETEG00000016268) #22	TMEM17 (ENSETEG00000016270) #23
Xenarthra	ANCESTRAL SPECIES	1711																ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23
Sloth	MODERN SPECIES	10225																B3GNT2 (ENSCHOG00000010860) #22
Armadillo	MODERN SPECIES	3857																B3GNT2 (ENSDNOG00000019435) #22	TMEM17 (ENSDNOG00000044982) #23
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00390000004911 #13	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956.n #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956.n #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
koala	MODERN SPECIES	20	BCL11A (ENSPCIG00000028097)	PAPOLG (ENSPCIG00000028094) #7	REL (ENSPCIG00000028091) #8	PUS10 (ENSPCIG00000028089) #10	PEX13 (ENSPCIG00000028088) #11	SANBR (ENSPCIG00000028080) #12	ENSPCIG00000028078 #15	ENSPCIG00000028076 #15	USP34 (ENSPCIG00000027791) #16	XPO1 (ENSPCIG00000027737) #17	ENSPCIG00000024939 #18	ENSPCIG00000024933 #19	ENSPCIG00000024931	COMMD1 (ENSPCIG00000024929) #20	ENSPCIG00000018941	B3GNT2 (ENSPCIG00000024925) #22	TMEM17 (ENSPCIG00000024919) #23	EHBP1 (ENSPCIG00000005257) #24	OTX1 (ENSPCIG00000024582) #25	ENSPCIG00000037374	WDPCP (ENSPCIG00000024581) #26	MDH1 (ENSPCIG00000024579) #27	UGP2 (ENSPCIG00000022314) #30	VPS54 (ENSPCIG00000022325) #31	PELI1 (ENSPCIG00000022340) #32	LGALSL (ENSPCIG00000020092) #33	ENSPCIG00000025803 #35	AFTPH (ENSPCIG00000025802) #34	SERTAD2 (ENSPCIG00000025805) #36	SLC1A4 (ENSPCIG00000023205) #37	ENSPCIG00000023208
Common wonbat	MODERN SPECIES	1017	VRK2 (ENSVURG00010013840)	FANCL (ENSVURG00010013810)	BCL11A (ENSVURG00010013786)	PAPOLG (ENSVURG00010013767) #7	REL (ENSVURG00010013755) #8	PUS10 (ENSVURG00010013746) #10	PEX13 (ENSVURG00010013735) #11	SANBR (ENSVURG00010013712) #12	ENSVURG00010013697 #15	USP34 (ENSVURG00010013652) #16	XPO1 (ENSVURG00010013626) #17	ENSVURG00010013620	ENSVURG00010013612 #18	CCT4 (ENSVURG00010013602) #19	COMMD1 (ENSVURG00010013596) #20	B3GNT2 (ENSVURG00010013583) #22	TMEM17 (ENSVURG00010013563) #23	EHBP1 (ENSVURG00010013361) #24	OTX1 (ENSVURG00010013336) #25	ENSVURG00010013329	WDPCP (ENSVURG00010013315) #26	MDH1 (ENSVURG00010013259) #27	UGP2 (ENSVURG00010013228) #30	VPS54 (ENSVURG00010013192) #31	PELI1 (ENSVURG00010013173) #32	LGALSL (ENSVURG00010013162) #33	ENSVURG00010013145 #35	AFTPH (ENSVURG00010013132) #34	SERTAD2 (ENSVURG00010013124) #36	SLC1A4 (ENSVURG00010013104) #37	ENSVURG00010013094
Wallaby	MODERN SPECIES	12367																B3GNT2 (ENSMEUG00000005056) #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000028498	VRK2 (ENSSHAG00000007771)	FANCL (ENSSHAG00000007148)	BCL11A (ENSSHAG00000015804)	PAPOLG (ENSSHAG00000014942) #7	REL (ENSSHAG00000014405) #8	PUS10 (ENSSHAG00000014089) #10	PEX13 (ENSSHAG00000013994) #11	SANBR (ENSSHAG00000013637) #12	ENSSHAG00000013408 #13	ENSSHAG00000013229 #15	USP34 (ENSSHAG00000012141) #16	XPO1 (ENSSHAG00000011230) #17	ENSSHAG00000008962 #18	CCT4 (ENSSHAG00000008579) #19	B3GNT2 (ENSSHAG00000027237) #22	COMMD1 (ENSSHAG00000005803) #20	TMEM17 (ENSSHAG00000014235) #23	EHBP1 (ENSSHAG00000011490) #24	OTX1 (ENSSHAG00000011389) #25	WDPCP (ENSSHAG00000009447) #26	MDH1 (ENSSHAG00000008365) #27	UGP2 (ENSSHAG00000003089) #30	VPS54 (ENSSHAG00000000961) #31	PELI1 (ENSSHAG00000024330) #32	LGALSL (ENSSHAG00000026611) #33	AFTPH (ENSSHAG00000010633) #34	ENSSHAG00000028826 #35	SERTAD2 (ENSSHAG00000022880) #36	SLC1A4 (ENSSHAG00000029893) #37	ENSSHAG00000004687
Opossum	MODERN SPECIES		FANCL (ENSMODG00000002105)	BCL11A (ENSMODG00000002114)	PAPOLG (ENSMODG00000002160) #7	ENSMODG00000042596	REL (ENSMODG00000002172) #8	PUS10 (ENSMODG00000002202) #10	PEX13 (ENSMODG00000002217) #11	SANBR (ENSMODG00000002252) #12	ENSMODG00000002285 #15	ENSMODG00000023119	USP34 (ENSMODG00000002734) #16	XPO1 (ENSMODG00000002831) #17	ENSMODG00000002850 #18	ENSMODG00000002882 #19	COMMD1 (ENSMODG00000002887) #20	B3GNT2 (ENSMODG00000023125) #22	TMEM17 (ENSMODG00000002895) #23	ENSMODG00000046978	EHBP1 (ENSMODG00000002986) #24	OTX1 (ENSMODG00000037978) #25	ENSMODG00000038398	WDPCP (ENSMODG00000003049) #26	MDH1 (ENSMODG00000003073) #27	ENSMODG00000038904	ENSMODG00000003102 #30	VPS54 (ENSMODG00000003191) #31	PELI1 (ENSMODG00000003212) #32	ENSMODG00000003226 #33	ENSMODG00000047159 #35	AFTPH (ENSMODG00000003235) #34	SERTAD2 (ENSMODG00000023126) #36
Platypus	MODERN SPECIES	20	CCDC85A (ENSOANG00000011176)	VRK2 (ENSOANG00000011175)	FANCL (ENSOANG00000011174)	BCL11A (ENSOANG00000020939)	PAPOLG (ENSOANG00000012403) #7	REL (ENSOANG00000012405) #8	PUS10 (ENSOANG00000012408) #10	PEX13 (ENSOANG00000012410) #11	SANBR (ENSOANG00000012411) #12	ENSOANG00000012414 #15	USP34 (ENSOANG00000012415) #16	XPO1 (ENSOANG00000012417) #17	ENSOANG00000012418 #18	CCT4 (ENSOANG00000012419) #19	COMMD1 (ENSOANG00000012420) #20	B3GNT2 (ENSOANG00000012421) #22	TMEM17 (ENSOANG00000012422) #23	EHBP1 (ENSOANG00000012423) #24	OTX1 (ENSOANG00000044489) #25	WDPCP (ENSOANG00000012425) #26	MDH1 (ENSOANG00000012426) #27	UGP2 (ENSOANG00000012427) #30	VPS54 (ENSOANG00000012428) #31	PELI1 (ENSOANG00000012431) #32	LGALSL (ENSOANG00000012432) #33	ENSOANG00000036481 #35	AFTPH (ENSOANG00000012433) #34	SERTAD2 (ENSOANG00000012435) #36	SLC1A4 (ENSOANG00000012436) #37	ENSOANG00000045432	RAB1A (ENSOANG00000012438)
Sauria	ANCESTRAL SPECIES	1	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Cryptodira	ANCESTRAL SPECIES	49															ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Testudinoidea	ANCESTRAL SPECIES		ENSGT00990000204385	ENSGT00390000016400	ENSGT00940000160148	ENSGT00940000156461	ENSGT00960000192974	ENSGT00940000158513	ENSGT00940000159062	ENSGT00950000183045.B	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000161298	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000162977	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Emydidae	ANCESTRAL SPECIES	41	ENSGT00390000016400	ENSGT00940000160148	ENSGT00940000156461	ENSGT00390000008610.a.a.j.a	ENSGT00960000192974	ENSGT00940000158513	ENSGT00940000159062	ENSGT00950000183045.B	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000161298	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000162977	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Three-toed box turtle	MODERN SPECIES	62	BTBD3 (ENSTMTG00000011163)	ENSTMTG00000011173	ENSTMTG00000011181	SPTLC3 (ENSTMTG00000011203)	ENSTMTG00000011271	TASP1 (ENSTMTG00000011283)	ENSTMTG00000011318	ENSTMTG00000011328	ENSTMTG00000011336	NDUFAF5 (ENSTMTG00000011360)	SEL1L2 (ENSTMTG00000011547)	ENSTMTG00000011585	FLRT3 (ENSTMTG00000011594)	ENSTMTG00000011617	COMMD1 (ENSTMTG00000011699) #20	B3GNT2 (ENSTMTG00000011706) #22	TMEM17 (ENSTMTG00000011710) #23	EHBP1 (ENSTMTG00000011723) #24	OTX1 (ENSTMTG00000011768) #25	ENSTMTG00000011785 #26	ENSTMTG00000011798	MDH1 (ENSTMTG00000011807) #27	UGP2 (ENSTMTG00000011829) #30	VPS54 (ENSTMTG00000011848) #31	PELI1 (ENSTMTG00000011887) #32	LGALSL (ENSTMTG00000011905) #33	AFTPH (ENSTMTG00000011932) #34	ENSTMTG00000011985 #35	SERTAD2 (ENSTMTG00000012002) #36	ENSTMTG00000012010 #37	CEP68 (ENSTMTG00000012027)
painted turtle	MODERN SPECIES	798															COMMD1 (ENSCPBG00000009436) #20	B3GNT2 (ENSCPBG00000009448) #22	TMEM17 (ENSCPBG00000009468) #23	ENSCPBG00000009473	EHBP1 (ENSCPBG00000009627) #24	OTX1 (ENSCPBG00000013188) #25	WDPCP (ENSCPBG00000013191) #26	MDH1 (ENSCPBG00000013198) #27	UGP2 (ENSCPBG00000013202) #30	VPS54 (ENSCPBG00000013204) #31	ENSCPBG00000013207	PELI1 (ENSCPBG00000013208) #32	LGALSL (ENSCPBG00000013218) #33	AFTPH (ENSCPBG00000013222) #34	ENSCPBG00000013228 #35	SERTAD2 (ENSCPBG00000013231) #36	SLC1A4 (ENSCPBG00000013236) #37
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00990000204385	ENSGT00390000016400	ENSGT00940000160148	ENSGT00940000156461	ENSGT00960000192974	ENSGT00940000158513	ENSGT00940000159062	ENSGT00950000183045.B	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000161298	ENSGT00940000157404	ENSGT00940000159704	ENSGT00940000162977	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a.c #34	ENSGT00390000001858 #35	ENSGT00940000154186.a.d #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A
Abingdon island giant tortoise	MODERN SPECIES	2412														ENSCABG00000009550	COMMD1 (ENSCABG00000009556) #20	B3GNT2 (ENSCABG00000009558) #22	TMEM17 (ENSCABG00000009562) #23	EHBP1 (ENSCABG00000009568) #24	OTX1 (ENSCABG00000009851) #25	ENSCABG00000009854 #26	MDH1 (ENSCABG00000009857) #27	UGP2 (ENSCABG00000009859) #30	VPS54 (ENSCABG00000009863) #31
Goode s thornscrub tortoise	MODERN SPECIES	17	JAG1 (ENSGEVG00005011086)	BTBD3 (ENSGEVG00005010998)	ENSGEVG00005010972	ENSGEVG00005010934	SPTLC3 (ENSGEVG00005010827)	ISM1 (ENSGEVG00005010755)	TASP1 (ENSGEVG00005010643)	ENSGEVG00005010560	ENSGEVG00005010522	NDUFAF5 (ENSGEVG00005010165)	SEL1L2 (ENSGEVG00005009876)	FLRT3 (ENSGEVG00005009842)	ENSGEVG00005009818	ENSGEVG00005009613	COMMD1 (ENSGEVG00005009544) #20	B3GNT2 (ENSGEVG00005009523) #22	TMEM17 (ENSGEVG00005009491) #23	EHBP1 (ENSGEVG00005009124) #24	OTX1 (ENSGEVG00005009002) #25	ENSGEVG00005008975 #26	MDH1 (ENSGEVG00005004454) #27	UGP2 (ENSGEVG00005004320) #30	VPS54 (ENSGEVG00005004270) #31	PELI1 (ENSGEVG00005004247) #32	LGALSL (ENSGEVG00005004215) #33	ENSGEVG00005004188	ENSGEVG00005004165 #34	ENSGEVG00005004141 #34	SERTAD2 (ENSGEVG00005004127) #36	SLC1A4 (ENSGEVG00005004113) #37	CEP68 (ENSGEVG00005003967)
Chinese turtle	MODERN SPECIES	375														KIF16B (ENSPSIG00000009336)	COMMD1 (ENSPSIG00000013161) #20	B3GNT2 (ENSPSIG00000001211) #22	TMEM17 (ENSPSIG00000013175) #23	EHBP1 (ENSPSIG00000013180) #24	WDPCP (ENSPSIG00000013662) #26	MDH1 (ENSPSIG00000014797) #27	UGP2 (ENSPSIG00000015139) #30	VPS54 (ENSPSIG00000016091) #31	PELI1 (ENSPSIG00000017442) #32	ENSPSIG00000017632	LGALSL (ENSPSIG00000017748) #33	AFTPH (ENSPSIG00000017890) #34	SERTAD2 (ENSPSIG00000017893) #36	SLC1A4 (ENSPSIG00000017947) #37	CEP68 (ENSPSIG00000007957)	RAB1A (ENSPSIG00000008028)	ACTR2 (ENSPSIG00000008124)
Archosauria	ANCESTRAL SPECIES	29	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT01030000236025	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000157344 #15	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Aves	ANCESTRAL SPECIES	35	ENSGT00910000144115.b.i.a	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483	ENSGT00390000015299.a.b.b.b	ENSGT00530000063557.b	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Neognathae	ANCESTRAL SPECIES	32	ENSGT00910000144115.b.i.a	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483	ENSGT00390000015299.a.b.b.b	ENSGT00530000063557.b	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Galloanserae	ANCESTRAL SPECIES	29	ENSGT00910000144115.b.i.a	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483	ENSGT00390000015299.a.b.b.b	ENSGT00530000063557.b	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Anatidae	ANCESTRAL SPECIES	60	ENSGT00960000189550	ENSGT00940000156883	ENSGT00390000006619	ENSGT00940000162759	ENSGT00940000155423	ENSGT00940000155483	ENSGT00390000015299.a.b.b.b	ENSGT00530000063557.b	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Duck	MODERN SPECIES	21	ENSAPLG00000012615	DHX57 (ENSAPLG00000011333)	MORN2 (ENSAPLG00000011332)	ARHGEF33 (ENSAPLG00000011311)	SOS1 (ENSAPLG00000010443)	MAP4K3 (ENSAPLG00000008982)	ENSAPLG00000008965	THUMPD2 (ENSAPLG00000008775)	GPCPD1 (ENSAPLG00000008381)	SHLD1 (ENSAPLG00000021416)	CHGB (ENSAPLG00000008282)	TRMT6 (ENSAPLG00000007761)	MCM8 (ENSAPLG00000007052)	CRLS1 (ENSAPLG00000007013)	COMMD1 (ENSAPLG00000006974) #20	B3GNT2 (ENSAPLG00000001464) #22	TMEM17 (ENSAPLG00000006949) #23	EHBP1 (ENSAPLG00000006773) #24	OTX1 (ENSAPLG00000024184) #25	WDPCP (ENSAPLG00000010025) #26	MDH1 (ENSAPLG00000009983) #27	UGP2 (ENSAPLG00000009870) #30	VPS54 (ENSAPLG00000009734) #31	PELI1 (ENSAPLG00000009701) #32	LGALSL (ENSAPLG00000022507) #33	ENSAPLG00000017313 #35	AFTPH (ENSAPLG00000009640) #34	SERTAD2 (ENSAPLG00000000672) #36	SLC1A4 (ENSAPLG00000009621) #37	CEP68 (ENSAPLG00000016942)	RAB1A (ENSAPLG00000018342)
Pink-footed goose	MODERN SPECIES	179	GEMIN6 (ENSABRG00000016142)	ENSABRG00000000198	DHX57 (ENSABRG00000000213)	ENSABRG00000000275	ARHGEF33 (ENSABRG00000000300)	SOS1 (ENSABRG00000000429)	MAP4K3 (ENSABRG00000000617)	THUMPD2 (ENSABRG00000007120)	GPCPD1 (ENSABRG00000007166)	SHLD1 (ENSABRG00000007262)	CHGB (ENSABRG00000007265)	TRMT6 (ENSABRG00000007269)	MCM8 (ENSABRG00000007304)	CRLS1 (ENSABRG00000007396)	COMMD1 (ENSABRG00000007438) #20	B3GNT2 (ENSABRG00000007469) #22	TMEM17 (ENSABRG00000007473) #23	EHBP1 (ENSABRG00000007490) #24	ENSABRG00000007541	ENSABRG00000007545	OTX1 (ENSABRG00000007549) #25	WDPCP (ENSABRG00000007562) #26	MDH1 (ENSABRG00000007583) #27	UGP2 (ENSABRG00000007598) #30	VPS54 (ENSABRG00000007620) #31
Phasianidae	ANCESTRAL SPECIES	29	ENSGT00940000159280	ENSGT00940000157706	ENSGT00390000002768	ENSGT00940000156217	ENSGT00390000004254	ENSGT00940000154239.b	ENSGT00940000154524.b	ENSGT00390000018245.c	ENSGT00550000074867	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.b	ENSGT00940000159118	ENSGT00390000006820	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Phasianidae_b	ANCESTRAL SPECIES	28	ENSGT00940000159280	ENSGT00940000157706	ENSGT00390000002768	ENSGT00940000156217	ENSGT00390000004254	ENSGT00940000154239.b	ENSGT00940000154524.b	ENSGT00390000018245.c	ENSGT00550000074867	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.b	ENSGT00940000159118	ENSGT00390000006820	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Chicken	MODERN SPECIES	22	ALK (ENSGALG00010017563)	CLIP4 (ENSGALG00010017660)	PCARE (ENSGALG00010017666)	FAM179A (ENSGALG00010017670)	WDR43 (ENSGALG00010017677)	TRMT61B (ENSGALG00010017684)	SPDYA (ENSGALG00010017688)	EPCAM (ENSGALG00010017692)	MSH2 (ENSGALG00010017712)	KCNK12 (ENSGALG00010017723)	MSH6 (ENSGALG00010017746)	FBXO11 (ENSGALG00010017762)	FOXN2 (ENSGALG00010017768)	PPP1R21 (ENSGALG00010017797)	COMMD1 (ENSGALG00010017876) #20	B3GNT2 (ENSGALG00010017838) #22	TMEM17 (ENSGALG00010018880) #23	EHBP1 (ENSGALG00010016584) #24	OTX1 (ENSGALG00010016593) #25	WDPCP (ENSGALG00010016605) #26	MDH1 (ENSGALG00010016624) #27	UGP2 (ENSGALG00010018904) #30	VPS54 (ENSGALG00010018923) #31	PELI3 (ENSGALG00010018958) #32	LGALSL (ENSGALG00010017115) #33	AFTPH (ENSGALG00010017141) #34	ENSGALG00010017151 #35	SERTAD2 (ENSGALG00010019243) #36	SLC1A4 (ENSGALG00010019257) #37	CEP68 (ENSGALG00010017594)	RAB1B (ENSGALG00010017622)
Turkey	MODERN SPECIES	11	CLIP4 (ENSMGAG00000016536)	PCARE (ENSMGAG00000005295)	TOGARAM2 (ENSMGAG00000005284)	WDR43 (ENSMGAG00000005248)	TRMT61B (ENSMGAG00000005245)	SPDYA (ENSMGAG00000005227)	EPCAM (ENSMGAG00000005193)	ENSMGAG00000021705	MSH2 (ENSMGAG00000005134)	KCNK12 (ENSMGAG00000018988)	MSH6 (ENSMGAG00000005109)	FBXO11 (ENSMGAG00000005080)	FOXN2 (ENSMGAG00000005062)	PPP1R21 (ENSMGAG00000004979)	COMMD1 (ENSMGAG00000005060) #20	B3GNT2 (ENSMGAG00000015914) #22	TMEM17 (ENSMGAG00000004966) #23	EHBP1 (ENSMGAG00000004927) #24	WDPCP (ENSMGAG00000004854) #26	MDH1 (ENSMGAG00000004885) #27	UGP2 (ENSMGAG00000004824) #30	VPS54 (ENSMGAG00000004768) #31	PELI1 (ENSMGAG00000019753) #32	LGALSL (ENSMGAG00000004734) #33	ENSMGAG00000019014 #35	AFTPH (ENSMGAG00000004693) #34	SERTAD2 (ENSMGAG00000015908) #36	SLC1A4 (ENSMGAG00000004682) #37	CEP68 (ENSMGAG00000004667)	RAB1A (ENSMGAG00000004611)	ENSMGAG00000019067
Japanese quail	MODERN SPECIES	21	ALK (ENSCJPG00005001356)	CLIP4 (ENSCJPG00005001389)	PCARE (ENSCJPG00005001403)	TOGARAM2 (ENSCJPG00005001419)	WDR43 (ENSCJPG00005001449)	TRMT61B (ENSCJPG00005001466)	SPDYA (ENSCJPG00005001470)	EPCAM (ENSCJPG00005001489)	MSH2 (ENSCJPG00005001491)	KCNK12 (ENSCJPG00005001496)	MSH6 (ENSCJPG00005001501)	FBXO11 (ENSCJPG00005001507)	FOXN2 (ENSCJPG00005001519)	PPP1R21 (ENSCJPG00005001525)	COMMD1 (ENSCJPG00005001529) #20	B3GNT2 (ENSCJPG00005001536) #22	CDC42BPA (ENSCJPG00005001545)	COQ8A (ENSCJPG00005001563)	PSEN2 (ENSCJPG00005001573)	ITPKB (ENSCJPG00005001582)	NDUFAF5 (ENSCJPG00005001622)	TASP1 (ENSCJPG00005001884)	ISM1 (ENSCJPG00005001894)	SPTLC3 (ENSCJPG00005001905)	BTBD3 (ENSCJPG00005001943)	JAG1 (ENSCJPG00005001965)	SLX4IP (ENSCJPG00005001979)	MKKS (ENSCJPG00005001993)	SNAP25 (ENSCJPG00005002002)	ANKEF1 (ENSCJPG00005002008)	ENSCJPG00005002017
Neognathae_b	ANCESTRAL SPECIES	32	ENSGT01030000234642.a.b.b.d.a	ENSGT00940000155710	ENSGT00940000155037	ENSGT00390000013968	ENSGT00940000155129.B	ENSGT00390000001878	ENSGT00940000154987	ENSGT00530000063557.b	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Passeriformes	ANCESTRAL SPECIES	31	ENSGT00510000047589	ENSGT01030000234642.a.b.b.d.a	ENSGT00940000155710	ENSGT00940000155037	ENSGT00390000013968	ENSGT00940000155129.B	ENSGT00390000001878	ENSGT00940000154987	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Great tit	MODERN SPECIES	22	GALM (ENSPMJG00000003220)	HNRNPLL (ENSPMJG00000003212)	ATL2 (ENSPMJG00000003205)	EIF4A3 (ENSPMJG00000003192)	GINS1 (ENSPMJG00000003185)	SLC8A1 (ENSPMJG00000003177)	MAL (ENSPMJG00000003039)	GPCPD1 (ENSPMJG00000003002)	MRPS5 (ENSPMJG00000002980)	SHLD1 (ENSPMJG00000002859)	CHGB (ENSPMJG00000002857)	TRMT6 (ENSPMJG00000002846)	MCM8 (ENSPMJG00000002840)	CRLS1 (ENSPMJG00000002831)	COMMD1 (ENSPMJG00000002828) #20	B3GNT2 (ENSPMJG00000002825) #22	TMEM17 (ENSPMJG00000002814) #23	EHBP1 (ENSPMJG00000002565) #24	OTX1 (ENSPMJG00000002556) #25	WDPCP (ENSPMJG00000002462) #26	MDH1 (ENSPMJG00000002452) #27	UGP2 (ENSPMJG00000002442) #30	VPS54 (ENSPMJG00000002369) #31	PELI1 (ENSPMJG00000002305) #32	LGALSL (ENSPMJG00000002274) #33	ENSPMJG00000002259 #35	AFTPH (ENSPMJG00000002220) #34	SERTAD2 (ENSPMJG00000002211) #36	SLC1A4 (ENSPMJG00000002145) #37	CEP68 (ENSPMJG00000002124)	RAB1A (ENSPMJG00000002113)
Passeriformes_d	ANCESTRAL SPECIES	32	ENSGT00510000047589	ENSGT01030000234642.a.b.b.d.a	ENSGT00940000155710	ENSGT00940000155037	ENSGT00390000013968	ENSGT00940000155129.B	ENSGT00390000001878	ENSGT00940000154987	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Passeriformes_g	ANCESTRAL SPECIES	42	ENSGT00510000047589	ENSGT01030000234642.a.b.b.d.a	ENSGT00940000155710	ENSGT00940000155037	ENSGT00390000013968	ENSGT00940000155129.B	ENSGT00390000001878	ENSGT00940000154987	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Medium ground finch	MODERN SPECIES	223	ENSGFOG00000005548	GALM (ENSGFOG00000005559)	HNRNPLL (ENSGFOG00000005571)	ATL2 (ENSGFOG00000005611)	EIF4A3 (ENSGFOG00000005684)	GINS1 (ENSGFOG00000005691)	SLC8A1 (ENSGFOG00000005696)	MRPS5 (ENSGFOG00000005701)	MAL (ENSGFOG00000005707)	GPCPD1 (ENSGFOG00000005719)	CHGB (ENSGFOG00000005749)	TRMT6 (ENSGFOG00000005774)	MCM8 (ENSGFOG00000005888)	CRLS1 (ENSGFOG00000005905)	COMMD1 (ENSGFOG00000005910) #20	B3GNT2 (ENSGFOG00000005918) #22
Passeroidea	ANCESTRAL SPECIES	41	ENSGT00510000047589	ENSGT01030000234642.a.b.b.d.a	ENSGT00940000155710	ENSGT00940000155037	ENSGT00390000013968	ENSGT00940000155129.B	ENSGT00390000001878	ENSGT00940000154987	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Zebra finch	MODERN SPECIES	23	ENSTGUG00000002093	ENSTGUG00000002095	GALM (ENSTGUG00000023405)	ATL2 (ENSTGUG00000002121)	EIF4A3 (ENSTGUG00000002132)	GINS1 (ENSTGUG00000002143)	SLC8A1 (ENSTGUG00000002147)	MRPS5 (ENSTGUG00000002166)	MAL (ENSTGUG00000025528)	GPCPD1 (ENSTGUG00000002182)	CHGB (ENSTGUG00000025948)	TRMT6 (ENSTGUG00000002195)	MCM8 (ENSTGUG00000002203)	CRLS1 (ENSTGUG00000002210)	COMMD1 (ENSTGUG00000002215) #20	B3GNT2 (ENSTGUG00000002218) #22	TMEM17 (ENSTGUG00000002226) #23	EHBP1 (ENSTGUG00000002228) #24	OTX1 (ENSTGUG00000019683) #25	WDPCP (ENSTGUG00000002232) #26	MDH1 (ENSTGUG00000002244) #27	UGP2 (ENSTGUG00000002252) #30	VPS54 (ENSTGUG00000002268) #31	PELI1 (ENSTGUG00000002289) #32	LGALSL (ENSTGUG00000025180) #33	ENSTGUG00000025533 #35	AFTPH (ENSTGUG00000002302) #34	SERTAD2 (ENSTGUG00000024469) #36	SLC1A4 (ENSTGUG00000002315) #37	CEP68 (ENSTGUG00000029210)	RAB1A (ENSTGUG00000002328)
Flycatcher	MODERN SPECIES	21	SRSF7 (ENSFALG00000002366)	GALM (ENSFALG00000002357)	HNRNPLL (ENSFALG00000002355)	ATL2 (ENSFALG00000002354)	ENSFALG00000002343	ENSFALG00000002330	ENSFALG00000002334	ENSFALG00000026399	ENSFALG00000002327	GPCPD1 (ENSFALG00000013563)	CHGB (ENSFALG00000013569)	TRMT6 (ENSFALG00000013575)	MCM8 (ENSFALG00000013581)	CRLS1 (ENSFALG00000013583)	COMMD1 (ENSFALG00000013585) #20	ENSFALG00000014145 #22	TMEM17 (ENSFALG00000013589) #23	EHBP1 (ENSFALG00000013591) #24	OTX1 (ENSFALG00000013593) #25	WDPCP (ENSFALG00000013596) #26	MDH1 (ENSFALG00000013597) #27	UGP2 (ENSFALG00000013598) #30	VPS54 (ENSFALG00000013599) #31	PELI1 (ENSFALG00000013605) #32	LGALSL (ENSFALG00000013611) #33	AFTPH (ENSFALG00000013616) #34	ENSFALG00000028308 #35	SERTAD2 (ENSFALG00000014149) #36	SLC1A4 (ENSFALG00000013619) #37	CEP68 (ENSFALG00000013621)	RAB1A (ENSFALG00000023532)
Neognathae_c	ANCESTRAL SPECIES	35	ENSGT01030000234642.a.b.b.d.a	ENSGT00940000155710	ENSGT00940000155037	ENSGT00390000013968	ENSGT00940000155129.B	ENSGT00390000001878	ENSGT00940000154987	ENSGT00530000063557.b	ENSGT00440000033970	ENSGT00390000014969	ENSGT00940000154206.b	ENSGT00390000008327	ENSGT01090000260080.a	ENSGT00390000001607	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154958
Golden eagle	MODERN SPECIES	24	ARHGAP18 (ENSACCG00020004555)	LAMA2 (ENSACCG00020004852)	ENSACCG00020005145	PTPRK (ENSACCG00020005208)	ENSACCG00020005276	ENSACCG00020005282	C6orf58 (ENSACCG00020005290)	THUMPD2 (ENSACCG00020005303)	GPCPD1 (ENSACCG00020005326)	SHLD1 (ENSACCG00020005345)	CHGB (ENSACCG00020005353)	TRMT6 (ENSACCG00020005372)	MCM8 (ENSACCG00020005397)	CRLS1 (ENSACCG00020005476)	COMMD1 (ENSACCG00020005501) #20	B3GNT2 (ENSACCG00020005515) #22	TMEM17 (ENSACCG00020005527) #23	EHBP1 (ENSACCG00020005580) #24	OTX1 (ENSACCG00020005656) #25	WDPCP (ENSACCG00020005678) #26	MDH1 (ENSACCG00020005699) #27	UGP2 (ENSACCG00020005728) #30	VPS54 (ENSACCG00020005801) #31	PELI1 (ENSACCG00020005906) #32	LGALSL (ENSACCG00020005930) #33	AFTPH (ENSACCG00020005956) #34	ENSACCG00020005980 #35	SERTAD2 (ENSACCG00020005994) #36	SLC1A4 (ENSACCG00020006005) #37	CEP68 (ENSACCG00020006029)	RAB1A (ENSACCG00020006051)
Kakapo	MODERN SPECIES	23	HNRNPLL (ENSSHBG00005007262)	ATL2 (ENSSHBG00005007678)	EIF4A3 (ENSSHBG00005014228)	GINS1 (ENSSHBG00005014239)	SLC8A1 (ENSSHBG00005014262)	MRPS5 (ENSSHBG00005014275)	MAL (ENSSHBG00005014293)	THUMPD2 (ENSSHBG00005014302)	GPCPD1 (ENSSHBG00005014317)	SHLD1 (ENSSHBG00005014340)	CHGB (ENSSHBG00005014349)	TRMT6 (ENSSHBG00005014364)	MCM8 (ENSSHBG00005014414)	CRLS1 (ENSSHBG00005014928)	COMMD1 (ENSSHBG00005014933) #20	B3GNT2 (ENSSHBG00005014942) #22	TMEM17 (ENSSHBG00005014948) #23	EHBP1 (ENSSHBG00005014965) #24	OTX1 (ENSSHBG00005014991) #25	WDPCP (ENSSHBG00005015001) #26	MDH1 (ENSSHBG00005015017) #27	UGP2 (ENSSHBG00005015028) #30	VPS54 (ENSSHBG00005015051) #31	ENSSHBG00005015079	PELI1 (ENSSHBG00005015086) #32	LGALSL (ENSSHBG00005015090) #33	AFTPH (ENSSHBG00005015097) #34	ENSSHBG00005015104 #35	SERTAD2 (ENSSHBG00005015121) #36	SLC1A4 (ENSSHBG00005015130) #37	CEP68 (ENSSHBG00005015142)
African ostrich	MODERN SPECIES	1035	DHX57 (ENSSCUG00000016646)	ENSSCUG00000016648	GEMIN6 (ENSSCUG00000016649)	ENSSCUG00000016650	GALM (ENSSCUG00000016651)	HNRNPLL (ENSSCUG00000016652)	ATL2 (ENSSCUG00000016653)	EIF4A3 (ENSSCUG00000016654)	GINS1 (ENSSCUG00000016655)	GPCPD1 (ENSSCUG00000016657)	SHLD1 (ENSSCUG00000016660)	CHGB (ENSSCUG00000016662)	TRMT6 (ENSSCUG00000016663)	MCM8 (ENSSCUG00000016665)	COMMD1 (ENSSCUG00000016672) #20	B3GNT2 (ENSSCUG00000016675) #22	TMEM17 (ENSSCUG00000016683) #23	EHBP1 (ENSSCUG00000016694) #24	WDPCP (ENSSCUG00000016705) #26	MDH1 (ENSSCUG00000016711) #27	UGP2 (ENSSCUG00000016718) #30	VPS54 (ENSSCUG00000016720) #31	PELI1 (ENSSCUG00000016725) #32	LGALSL (ENSSCUG00000016734) #33	AFTPH (ENSSCUG00000016739) #34	ENSSCUG00000016745 #35	SERTAD2 (ENSSCUG00000016748) #36	SLC1A4 (ENSSCUG00000016756) #37	ENSSCUG00000016764	RAB1A (ENSSCUG00000016768)	ACTR2 (ENSSCUG00000016771)
Lepidosauria	ANCESTRAL SPECIES	69													ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.h	ENSGT00940000154958
Episquamata	ANCESTRAL SPECIES		ENSGT00710000108307	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000159860	ENSGT01050000244824.B	ENSGT00940000156618	ENSGT00940000160697	ENSGT00950000182848.c.b.b.b	ENSGT00950000182848.d	ENSGT00940000156439.s	ENSGT00940000162013	ENSGT00940000156439.r.a	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.h	ENSGT00940000154958
Toxicofera	ANCESTRAL SPECIES		ENSGT00950000182844.b.a	ENSGT00940000162362.b	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000159860	ENSGT01050000244824.B	ENSGT00940000156618	ENSGT00940000160697	ENSGT00950000182848.c.b.b.b	ENSGT00950000182848.d	ENSGT00940000162013	ENSGT00940000156439.r.a	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.h
Elapidae	ANCESTRAL SPECIES		ENSGT00940000162510.t.b	ENSGT00950000182844.b.a	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000159860	ENSGT01050000244824.B	ENSGT00940000156618	ENSGT00940000160697	ENSGT00950000182848.c.b.b.b	ENSGT00950000182848.d	ENSGT00940000162013	ENSGT00940000156439.r.a.d	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.h
Elapidae_a	ANCESTRAL SPECIES	6	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000159860	ENSGT01050000244824.B	ENSGT00940000156618	ENSGT00940000160697	ENSGT00950000182848.c.b.b.b	ENSGT00950000182848.d	ENSGT00940000162013.p	ENSGT00940000156439.r.a.d	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT01100000263484.C.a.l	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.h
Acanthophiinae	ANCESTRAL SPECIES	8	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a	ENSGT00940000159860	ENSGT01050000244824.B	ENSGT00940000156618	ENSGT00940000160697	ENSGT00950000182848.c.b.b.b	ENSGT00950000182848.d	ENSGT00940000162013.p	ENSGT00940000156439.r.a.d	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT01100000263484.C.a.l	ENSGT00940000154186.a #34	ENSGT00390000001858 #35	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.h
Eastern brown snake	MODERN SPECIES	56	ENSPTXG00000006447	ENSPTXG00000006448	TRAM2 (ENSPTXG00000006451)	EFHC1 (ENSPTXG00000006452)	MCM3 (ENSPTXG00000006453)	IL17F (ENSPTXG00000006464)	TFAP2B (ENSPTXG00000006479)	TFAP2D (ENSPTXG00000006480)	ENSPTXG00000006481	ENSPTXG00000006483	ENSPTXG00000006485	ENSPTXG00000006487 #18	ENSPTXG00000006489 #18	CCT4 (ENSPTXG00000006490) #19	COMMD1 (ENSPTXG00000006517) #20	B3GNT2 (ENSPTXG00000006518) #22	TMEM17 (ENSPTXG00000006519) #23	EHBP1 (ENSPTXG00000006520) #24	OTX1 (ENSPTXG00000006521) #25	ENSPTXG00000006522 #26	MDH1 (ENSPTXG00000006523) #27	UGP2 (ENSPTXG00000006524) #30	VPS54 (ENSPTXG00000006525) #31	PELI1 (ENSPTXG00000006526) #32	LGALSL (ENSPTXG00000006527) #33	MLNR (ENSPTXG00000006528)	AFTPH (ENSPTXG00000006529) #34	ENSPTXG00000005770 #35	SERTAD2 (ENSPTXG00000005772) #36	SLC1A4 (ENSPTXG00000005773) #37	ENSPTXG00000005775
Mainland tiger snake	MODERN SPECIES	23													FAM161A (ENSNSUG00000019087) #18	CCT4 (ENSNSUG00000019089) #19	ENSNSUG00000019090	B3GNT2 (ENSNSUG00000019091) #22	TMEM17 (ENSNSUG00000019093) #23	EHBP1 (ENSNSUG00000019094) #24	OTX1 (ENSNSUG00000019118) #25	WDPCP (ENSNSUG00000019119) #26	MDH1 (ENSNSUG00000019120) #27	UGP2 (ENSNSUG00000019121) #30	VPS54 (ENSNSUG00000019122) #31	PELI1 (ENSNSUG00000019123) #32	LGALSL (ENSNSUG00000019124) #33	MLNR (ENSNSUG00000019125)	AFTPH (ENSNSUG00000019132) #34	ENSNSUG00000019134 #35	SERTAD2 (ENSNSUG00000019135) #36	ENSNSUG00000019136	SLC1A4 (ENSNSUG00000019138) #37
Blue-lipped sea krait	MODERN SPECIES	5765																B3GNT2 (ENSLLTG00000009654) #22
Indian cobra	MODERN SPECIES		TRAM2 (ENSNNAG00000014579)	EFHC1 (ENSNNAG00000014556)	PAQR8 (ENSNNAG00000014541)	MCM3 (ENSNNAG00000014512)	IL17F (ENSNNAG00000014489)	PKHD1 (ENSNNAG00000014363)	TFAP2B (ENSNNAG00000014323)	ENSNNAG00000014311	ENSNNAG00000014300	ENSNNAG00000014282	ENSNNAG00000014151	FAM161A (ENSNNAG00000014113) #18	CCT4 (ENSNNAG00000014059) #19	ENSNNAG00000014050	ENSNNAG00000014035 #20	B3GNT2 (ENSNNAG00000014031) #22	TMEM17 (ENSNNAG00000014018) #23	EHBP1 (ENSNNAG00000013729) #24	OTX1 (ENSNNAG00000013651) #25	WDPCP (ENSNNAG00000013610) #26	MDH1 (ENSNNAG00000013583) #27	UGP2 (ENSNNAG00000013510) #30	VPS54 (ENSNNAG00000013453) #31	PELI1 (ENSNNAG00000013434) #32	ENSNNAG00000013415	LGALSL (ENSNNAG00000013404) #33	MLNR (ENSNNAG00000013400)	ENSNNAG00000013378 #35	ENSNNAG00000013342 #34	SERTAD2 (ENSNNAG00000013335) #36	SLC1A4 (ENSNNAG00000013270) #37
Lizard	MODERN SPECIES		LSS (ENSACAG00000004914)	MCM3AP (ENSACAG00000004980)	YBEY (ENSACAG00000005066)	TRAM2 (ENSACAG00000005070)	EFHC1 (ENSACAG00000005118)	MCM3 (ENSACAG00000005146)	IL17F (ENSACAG00000005245)	TFAP2B (ENSACAG00000005251)	TFAP2D (ENSACAG00000005336)	ENSACAG00000005354	CRISP3 (ENSACAG00000005469)	FAM161A (ENSACAG00000005568) #18	CCT4 (ENSACAG00000005569) #19	ENSACAG00000034625	COMMD1 (ENSACAG00000005706) #20	B3GNT2 (ENSACAG00000005727) #22	ENSACAG00000040766	ENSACAG00000037410	ENSACAG00000037825	EHBP1 (ENSACAG00000005744) #24	OTX1 (ENSACAG00000005818) #25	WDPCP (ENSACAG00000005832) #26	ENSACAG00000005852	MDH1 (ENSACAG00000005865) #27	UGP2 (ENSACAG00000005960) #30	VPS54 (ENSACAG00000006033) #31	PELI1 (ENSACAG00000040221) #32	COPS8 (ENSACAG00000010495)	ACKR3 (ENSACAG00000010490)	IQCA1 (ENSACAG00000028076)	ASB18 (ENSACAG00000010384)
Laterata	ANCESTRAL SPECIES	13	ENSGT00710000108307	ENSGT00510000046470.a.b	ENSGT00530000063528.A.a.c	ENSGT00940000159860	ENSGT01050000244824.B	ENSGT00940000156618	ENSGT00940000160697	ENSGT00950000182848.c.b.b.b	ENSGT00950000182848.d	ENSGT00940000156439.s	ENSGT00940000162013	ENSGT00940000156439.r.a	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00390000001858 #35	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A.h	ENSGT00940000156841
Argentine black and white tegu	MODERN SPECIES	54	ENSSMRG00000006016	TRAM2 (ENSSMRG00000006014)	EFHC1 (ENSSMRG00000005996)	ENSSMRG00000005995	MCM3 (ENSSMRG00000005991)	IL17F (ENSSMRG00000005978)	ENSSMRG00000005977	TFAP2B (ENSSMRG00000005975)	TFAP2D (ENSSMRG00000005974)	ENSSMRG00000005927	ENSSMRG00000005909	ENSSMRG00000005739	FAM161A (ENSSMRG00000005692) #18	CCT4 (ENSSMRG00000005614) #19	COMMD1 (ENSSMRG00000005611) #20	B3GNT2 (ENSSMRG00000005605) #22	ENSSMRG00000005599	TMEM17 (ENSSMRG00000005554) #23	EHBP1 (ENSSMRG00000005524) #24	OTX1 (ENSSMRG00000005510) #25	WDPCP (ENSSMRG00000005490) #26	MDH1 (ENSSMRG00000005439) #27	UGP2 (ENSSMRG00000005430) #30	VPS54 (ENSSMRG00000005426) #31	PELI1 (ENSSMRG00000005414) #32	LGALSL (ENSSMRG00000005386) #33	ENSSMRG00000005383 #35	AFTPH (ENSSMRG00000005377) #34	SERTAD2 (ENSSMRG00000005372) #36	SLC1A4 (ENSSMRG00000005324) #37	ENSSMRG00000005322
tuatara	MODERN SPECIES	78													FAM161A (ENSSPUG00000013112) #18	CCT4 (ENSSPUG00000013058) #19	COMMD1 (ENSSPUG00000013049) #20	B3GNT2 (ENSSPUG00000013043) #22	TMEM17 (ENSSPUG00000013034) #23	EHBP1 (ENSSPUG00000013010) #24	OTX1 (ENSSPUG00000012988) #25	WDPCP (ENSSPUG00000012958) #26	MDH1 (ENSSPUG00000012931) #27	UGP2 (ENSSPUG00000012916) #30	VPS54 (ENSSPUG00000012900) #31	PELI1 (ENSSPUG00000012897) #32	LGALSL (ENSSPUG00000012885) #33	ENSSPUG00000012880 #35	AFTPH (ENSSPUG00000012864) #34	SLC1A4 (ENSSPUG00000012843) #37	ENSSPUG00000012834	RAB1A (ENSSPUG00000012822)	ACTR2 (ENSSPUG00000012816)
Anura	ANCESTRAL SPECIES	16	ENSGT00940000157837	ENSGT00940000157361	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.a #32	ENSGT00940000155337 #33	ENSGT00940000154347.a	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000005603	ENSLLEG00000005610	PAPOLG (ENSLLEG00000005624) #7	REL (ENSLLEG00000005742) #8	PUS10 (ENSLLEG00000005786) #10	ENSLLEG00000005875	SANBR (ENSLLEG00000005906) #12	USP34 (ENSLLEG00000006009) #16	XPO1 (ENSLLEG00000006444) #17	ENSLLEG00000006618	FAM161A (ENSLLEG00000006638) #18	ENSLLEG00000006686	CCT4 (ENSLLEG00000006712) #19	COMMD1 (ENSLLEG00000006880) #20	ENSLLEG00000006902	B3GNT2 (ENSLLEG00000006916) #22	EHBP1 (ENSLLEG00000006950) #24	ENSLLEG00000007289	OTX1 (ENSLLEG00000007304) #25	WDPCP (ENSLLEG00000007365) #26	MDH1 (ENSLLEG00000007707) #27	ENSLLEG00000007978 #30	VPS54 (ENSLLEG00000008019) #31	PELI1 (ENSLLEG00000008444) #32	ENSLLEG00000008486	ENSLLEG00000008502	ENSLLEG00000008521	LGALSL (ENSLLEG00000008554) #33	SYS1 (ENSLLEG00000008712)	AFTPH (ENSLLEG00000008756) #34	SERTAD2 (ENSLLEG00000009029) #36
Frog	MODERN SPECIES	5	ENSXETG00000020482	ENSXETG00000043268	bcl11a (ENSXETG00000002206)	papolg (ENSXETG00000002208) #7	ENSXETG00000047660	rel (ENSXETG00000002209) #8	ENSXETG00000048162	pus10 (ENSXETG00000002210) #10	pex13 (ENSXETG00000002212) #11	sanbr (ENSXETG00000002217) #12	usp34 (ENSXETG00000002218) #16	xpo1 (ENSXETG00000002224) #17	fam161a (ENSXETG00000002233) #18	cct4 (ENSXETG00000002227) #19	commd1 (ENSXETG00000002235) #20	b3gnt2 (ENSXETG00000002237) #22	ehbp1 (ENSXETG00000013029) #24	otx1 (ENSXETG00000040503) #25	wdpcp (ENSXETG00000013020) #26	mdh1 (ENSXETG00000013016) #27	ugp2 (ENSXETG00000013007) #30	ENSXETG00000046337	vps54 (ENSXETG00000013000) #31	ENSXETG00000043346	peli1 (ENSXETG00000012997) #32	ENSXETG00000038106	ENSXETG00000044468	lgalsl (ENSXETG00000025808) #33	sys1 (ENSXETG00000047554)	ENSXETG00000036875	aftph (ENSXETG00000014023) #34
Coelacanth	MODERN SPECIES	268										USP34 (ENSLACG00000018363) #16	XPO1 (ENSLACG00000018213) #17	ENSLACG00000018195	ENSLACG00000018120 #18	CCT4 (ENSLACG00000018104) #19	COMMD1 (ENSLACG00000017947) #20	B3GNT2 (ENSLACG00000017889) #22	ENSLACG00000017727	EHBP1 (ENSLACG00000017240) #24	OTX1 (ENSLACG00000017220) #25	WDPCP (ENSLACG00000016832) #26	MDH1 (ENSLACG00000016626) #27	UGP2 (ENSLACG00000016454) #30	VPS54 (ENSLACG00000016185) #31	PELI1 (ENSLACG00000015880) #32	ENSLACG00000015557	LGALSL (ENSLACG00000015424) #33	AFTPH (ENSLACG00000015062) #34	SERTAD2 (ENSLACG00000014958) #36	slc1a4 (ENSLACG00000013933) #37	slc1a4 (ENSLACG00000013894) #37	ENSLACG00000013207
Actinopterygii	ANCESTRAL SPECIES	19	ENSGT00940000157837	ENSGT00940000158042	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.b ##32	ENSGT00940000166587	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00950000183045.C
Neopterygii	ANCESTRAL SPECIES	3	ENSGT00940000158042	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000007529 #10	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000163878	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.b ##32	ENSGT00940000166587	ENSGT00940000155337 #33	ENSGT00940000154186.a #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00950000183045.C
Osteoglossocephalai	ANCESTRAL SPECIES	39									ENSGT00940000163878	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00940000178862	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00390000001858 #35	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00950000183045.C
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	115	ENSGT00940000154866.B.a	ENSGT00940000166683	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000157361.a	ENSGT00940000179750	ENSGT00940000170402	ENSGT00940000157361.b	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a.i	ENSGT00940000156467.n #7	ENSGT00940000158732.l #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000155345.o #22	ENSGT00940000157597 #24	ENSGT00940000161234.e #25	ENSGT00390000016551 #26	ENSGT00950000183050.b.b.b.a.a.b.b ##32	ENSGT00940000166587	ENSGT00940000155337.`b.b #33	ENSGT00940000154186.a.q #34	ENSGT00530000063867.b #36	ENSGT00940000157081.h #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556.e.b	ENSGT00940000154556.e.a	ENSGT00940000156841.b	ENSGT00940000156327.l
P. kingsleyae	MODERN SPECIES	11	slc17a5 (ENSPKIG00000002993)	RIN2 (ENSPKIG00000003022)	ENSPKIG00000003049	SLC24A3 (ENSPKIG00000003070)	soul2 (ENSPKIG00000003106)	ccdc85a (ENSPKIG00000003135)	ENSPKIG00000003162	fancl (ENSPKIG00000003202)	bcl11aa (ENSPKIG00000003260)	papolg (ENSPKIG00000003313) #7	ENSPKIG00000003400 #8	pex13 (ENSPKIG00000003409) #11	SANBR (ENSPKIG00000003437) #12	ENSPKIG00000003545 #17	ENSPKIG00000003715	B3GNT2 (ENSPKIG00000003847) #22	EHBP1 (ENSPKIG00000004032) #24	otx1 (ENSPKIG00000004281) #25	WDPCP (ENSPKIG00000004302) #26	mdh1ab (ENSPKIG00000004347) #27	ugp2b (ENSPKIG00000004404) #30	ENSPKIG00000004483 ##32	ENSPKIG00000004509	LGALSL (ENSPKIG00000004562) #33	ENSPKIG00000004596 #34	ENSPKIG00000004619 #36	slc1a4 (ENSPKIG00000004639) #37	cep68 (ENSPKIG00000004675)	rab1ab (ENSPKIG00000004714)	zgc:153169 (ENSPKIG00000004744)	ACTR2 (ENSPKIG00000004770)
Asian bonytongue	MODERN SPECIES	19	CGAS (ENSSFOG00015012161)	EEF1A1 (ENSSFOG00015012136)	slc17a5 (ENSSFOG00015012119)	ENSSFOG00015029442	ENSSFOG00015012058	ENSSFOG00015030330	ENSSFOG00015012043	vrk2 (ENSSFOG00015011998)	fancl (ENSSFOG00015011964)	bcl11aa (ENSSFOG00015026685)	papolg (ENSSFOG00015011874) #7	rel (ENSSFOG00015011855) #8	pex13 (ENSSFOG00015026130) #11	SANBR (ENSSFOG00015011799) #12	ENSSFOG00015011598 #17	B3GNT2 (ENSSFOG00015024343) #22	EHBP1 (ENSSFOG00015011508) #24	otx1 (ENSSFOG00015011487) #25	WDPCP (ENSSFOG00015027973) #26	MDH1 (ENSSFOG00015011431) #27	ugp2a (ENSSFOG00015011405) #30	ENSSFOG00015032922 ##32	ENSSFOG00015011260	lgalsla (ENSSFOG00015028463) #33	ENSSFOG00015027086 #34	ENSSFOG00015011233	ENSSFOG00015028900 #36	SLC1A4 (ENSSFOG00015011220) #37	cep68 (ENSSFOG00015028803)	ENSSFOG00015032633	zgc:153169 (ENSSFOG00015011091)
Osteoglossiformes	ANCESTRAL SPECIES	94	ENSGT00940000154866.B.b	ENSGT01030000234532.A.a.a.b.j.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00910000147025	ENSGT00940000156983.a.a.j	ENSGT00940000156467.o #7	ENSGT00940000158732.k #8	ENSGT00390000007529 #10	ENSGT00940000158659 #16	ENSGT00940000153408.B #17	ENSGT00940000157824 #18	ENSGT00940000178862	ENSGT00550000074956 #19	ENSGT00390000012029 #20	ENSGT00940000155345.p #22	ENSGT01100000263601	ENSGT00940000161234.f #25	ENSGT00530000063410.a #27	ENSGT00940000153464.B.z.a.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.b.a ##32	ENSGT00940000155337.`b.a #33	ENSGT00940000177082	ENSGT00940000154186.a.r #34
P. kingsleyae	MODERN SPECIES	21	RIN2 (ENSPKIG00000006500)	SLC24A3 (ENSPKIG00000006390)	dtd1 (ENSPKIG00000006316)	sec23b (ENSPKIG00000006239)	ccdc85al (ENSPKIG00000006178)	ENSPKIG00000006131	bcl11aa (ENSPKIG00000006097)	papolg (ENSPKIG00000006027) #7	rel (ENSPKIG00000005982) #8	pus10 (ENSPKIG00000005909) #10	USP34 (ENSPKIG00000005774) #16	XPO1 (ENSPKIG00000005688) #17	FAM161A (ENSPKIG00000005663) #18	cct4 (ENSPKIG00000005618) #19	commd1 (ENSPKIG00000005530) #20	B3GNT2 (ENSPKIG00000005518) #22	ENSPKIG00000005498	OTX1 (ENSPKIG00000005463) #25	MDH1 (ENSPKIG00000005390) #27	ugp2a (ENSPKIG00000005328) #30	vps54 (ENSPKIG00000005241) #31	ENSPKIG00000005190 ##32	lgalsla (ENSPKIG00000005170) #33	ENSPKIG00000005147	aftpha (ENSPKIG00000005133) #34	sertad2b (ENSPKIG00000005118) #36	SLC1A4 (ENSPKIG00000005084) #37	ENSPKIG00000005049	actr2a (ENSPKIG00000005014)	spred2b (ENSPKIG00000004984)	meis1b (ENSPKIG00000004887)
Asian bonytongue	MODERN SPECIES	7	dtd1 (ENSSFOG00015002797)	sec23b (ENSSFOG00015002716)	ccdc85al (ENSSFOG00015028476)	ENSSFOG00015002560	bcl11aa (ENSSFOG00015031714)	ENSSFOG00015002513	papolg (ENSSFOG00015002383) #7	rel (ENSSFOG00015002336) #8	pus10 (ENSSFOG00015002234) #10	USP34 (ENSSFOG00015001953) #16	XPO1 (ENSSFOG00015001881) #17	ENSSFOG00015029812 #18	ENSSFOG00015001847	cct4 (ENSSFOG00015001765) #19	commd1 (ENSSFOG00015001751) #20	B3GNT2 (ENSSFOG00015001747) #22	ENSSFOG00015001741	OTX1 (ENSSFOG00015001725) #25	MDH1 (ENSSFOG00015001676) #27	ugp2a (ENSSFOG00015001656) #30	vps54 (ENSSFOG00015001545) #31	ENSSFOG00015031456 ##32	lgalsla (ENSSFOG00015001472) #33	ENSSFOG00015001442	aftpha (ENSSFOG00015001420) #34	sertad2b (ENSSFOG00015024685) #36	slc1a4 (ENSSFOG00015001340) #37	rab1ab (ENSSFOG00015029420)	ACTR2 (ENSSFOG00015001243)	spred2b (ENSSFOG00015001205)	meis1b (ENSSFOG00015001129)
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	141	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000157361.a	ENSGT00940000170402	ENSGT00940000157361.b	ENSGT00940000158042	ENSGT00390000005537	ENSGT00910000147025	ENSGT00940000156983.a.a	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.s.a #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.r #27	ENSGT00940000155337.ab #33	ENSGT00940000166587	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000153464.B.z.b #30	ENSGT00530000063410.a.q.a #27
Otomorpha	ANCESTRAL SPECIES	10	ENSGT00940000166291	ENSGT00940000154866.B.a	ENSGT00940000166683.a.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000157361.a	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a.r	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.r #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000154186.a.q #34	ENSGT00940000177700	ENSGT00940000155337.ab #33	ENSGT00530000063867.b.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154556.c.b	ENSGT00940000156841.b
Clupeiformes	ANCESTRAL SPECIES	8	ENSGT00390000015299.a.b.b.b.d.a	ENSGT00530000063557.b	ENSGT00940000154866.B.a	ENSGT00940000166683.a.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000160412.b	ENSGT00940000158042	ENSGT00390000005537	ENSGT00940000156983.a.a.r	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.r #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000154186.a.q #34	ENSGT00940000155337.ab #33	ENSGT00530000063867.b.b #36	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000154556.c.b	ENSGT00940000156841.b	ENSGT00940000156327.l
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	4	ENSCHAG00000009989	ENSCHAG00000009404	ENSCHAG00000009372	soul2 (ENSCHAG00000009362)	ccdc85a (ENSCHAG00000009349)	vrk2 (ENSCHAG00000009283)	fancl (ENSCHAG00000009225)	bcl11aa (ENSCHAG00000009178)	papolg (ENSCHAG00000003904) #7	rel (ENSCHAG00000003607) #8	pex13 (ENSCHAG00000003593) #11	SANBR (ENSCHAG00000003275) #12	XPO1 (ENSCHAG00000002294) #17	ENSCHAG00000002206	b3gnt2b (ENSCHAG00000002175) #22	b3gnt2b (ENSCHAG00000002172) #22	EHBP1 (ENSCHAG00000001812) #24	otx1 (ENSCHAG00000001784) #25	WDPCP (ENSCHAG00000001434) #26	mdh1ab (ENSCHAG00000000940) #27	ENSCHAG00000000462	ENSCHAG00000019202	ugp2b (ENSCHAG00000018928) #30	peli1b (ENSCHAG00000018837) ##32	ENSCHAG00000018691	ENSCHAG00000018667	ENSCHAG00000018678 #34	lgalslb (ENSCHAG00000018658) #33	sertad2b (ENSCHAG00000018647) #36	slc1a4 (ENSCHAG00000018548) #37	c1d (ENSCHAG00000018513)
Atlantic herring	MODERN SPECIES	4	RIN2 (ENSCHAG00000010003)	ENSCHAG00000009989	ENSCHAG00000009404	ENSCHAG00000009372	soul2 (ENSCHAG00000009362)	ccdc85a (ENSCHAG00000009349)	vrk2 (ENSCHAG00000009283)	fancl (ENSCHAG00000009225)	bcl11aa (ENSCHAG00000009178)	papolg (ENSCHAG00000003904) #7	rel (ENSCHAG00000003607) #8	pex13 (ENSCHAG00000003593) #11	SANBR (ENSCHAG00000003275) #12	XPO1 (ENSCHAG00000002294) #17	ENSCHAG00000002206	b3gnt2b (ENSCHAG00000002175) #22	b3gnt2b (ENSCHAG00000002172) #22	EHBP1 (ENSCHAG00000001812) #24	otx1 (ENSCHAG00000001784) #25	WDPCP (ENSCHAG00000001434) #26	mdh1ab (ENSCHAG00000000940) #27	ENSCHAG00000000462	ENSCHAG00000019202	ugp2b (ENSCHAG00000018928) #30	peli1b (ENSCHAG00000018837) ##32	ENSCHAG00000018691	ENSCHAG00000018667	ENSCHAG00000018678 #34	lgalslb (ENSCHAG00000018658) #33	sertad2b (ENSCHAG00000018647) #36	slc1a4 (ENSCHAG00000018548) #37
Denticle herring	MODERN SPECIES	18	ENSDCDG00000022401	SLC24A3 (ENSDCDG00000022286)	soul2 (ENSDCDG00000022285)	ccdc85a (ENSDCDG00000022284)	vrk2 (ENSDCDG00000022282)	fancl (ENSDCDG00000022247)	ENSDCDG00000022243	ENSDCDG00000022240	bcl11aa (ENSDCDG00000022234)	papolg (ENSDCDG00000016269) #7	rel (ENSDCDG00000016031) #8	pex13 (ENSDCDG00000016023) #11	SANBR (ENSDCDG00000015943) #12	XPO1 (ENSDCDG00000015851) #17	ENSDCDG00000015816 #18	b3gnt2b (ENSDCDG00000015811) #22	EHBP1 (ENSDCDG00000015700) #24	otx1 (ENSDCDG00000015687) #25	WDPCP (ENSDCDG00000015075) #26	mdh1ab (ENSDCDG00000015055) #27	ENSDCDG00000015051	ugp2b (ENSDCDG00000014366) #30	peli1b (ENSDCDG00000014302) ##32	ENSDCDG00000014232	ENSDCDG00000014166	ENSDCDG00000014146 #34	lgalslb (ENSDCDG00000014126) #33	sertad2b (ENSDCDG00000014115) #36	slc1a4 (ENSDCDG00000013999) #37	cep68 (ENSDCDG00000032975)	rab1ab (ENSDCDG00000032925)
Otophysi	ANCESTRAL SPECIES	229	ENSGT00950000183148.b.b	ENSGT00940000166409	ENSGT00940000154551.b	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT01030000234606.a.a.a.b	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t.d.a #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587
Characiphysae	ANCESTRAL SPECIES	54		ENSGT00940000166409	ENSGT00940000154551.b	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT01030000234606.a.a.a.b	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t.d.a #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000174754	ENSGT00940000154186.a.q.g #34	ENSGT00940000177700	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000155109.a.a
Channel catfish	MODERN SPECIES	28	abhd12 (ENSIPUG00000012261)	hspa12a (ENSIPUG00000012353)	eno4 (ENSIPUG00000012457)	shtn1 (ENSIPUG00000012494)	ATP6V1B2 (ENSIPUG00000012539)	vax1 (ENSIPUG00000012584)	ENSIPUG00000012593	ENSIPUG00000012617	ENSIPUG00000012647	kcnk18 (ENSIPUG00000012673)	slc18a2 (ENSIPUG00000012691)	pdzd8 (ENSIPUG00000012766)	pex13 (ENSIPUG00000012783) #11	kiaa1841 (ENSIPUG00000012801) #12	Xpo1 (ENSIPUG00000012891) #17	b3gnt2b (ENSIPUG00000013024) #22	EHBP1 (ENSIPUG00000013044) #24	otx1 (ENSIPUG00000013113) #25	WDPCP (ENSIPUG00000013126) #26	MDH1 (ENSIPUG00000013164) #27	UGP2 (ENSIPUG00000013211) #30	peli1b (ENSIPUG00000013383) ##32	abcG20 (ENSIPUG00000013458)	ENSIPUG00000013628 #34	ENSIPUG00000013655	pygb (ENSIPUG00000013662)	ENSIPUG00000013756	ENTPD6 (ENSIPUG00000013815)	vsx1 (ENSIPUG00000013858)	ENSIPUG00000013889	ube2d1a (ENSIPUG00000013898)
Characiphysae_b	ANCESTRAL SPECIES	53	ENSGT00940000166409	ENSGT00940000154551.b	ENSGT00950000182805.a.b	ENSGT00510000048167.a	ENSGT00940000155068.a.b	ENSGT00940000161152	ENSGT01030000234606.a.a.a.b	ENSGT00940000165789	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t.d.a #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000154186.a.q.g.a #34	ENSGT00940000177700	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000155109.a.a	ENSGT00940000156276
Characoidei	ANCESTRAL SPECIES	149							ENSGT00940000165789	ENSGT01030000234606.a.a.a.b	ENSGT00940000161152	ENSGT00940000155068.a.b	ENSGT00510000048167.a	ENSGT00950000182805.a.b	ENSGT00940000154551.b.s	ENSGT00940000166409	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000154186.a.q.g.a #34	ENSGT00950000183148.b.b	ENSGT00390000018613.a	ENSGT01100000263540.A.a	ENSGT00940000157776.d	ENSGT00940000160793	ENSGT00940000155109.a.a	ENSGT00940000156276
Red-bellied piranha	MODERN SPECIES	105								ENSPNAG00000024902	ENSPNAG00000025100	vax1 (ENSPNAG00000025156)	atp6v1ba (ENSPNAG00000025256)	shtn1 (ENSPNAG00000025377)	hspa12a (ENSPNAG00000025546)	abhd12 (ENSPNAG00000025576)	ENSPNAG00000025594	b3gnt2b (ENSPNAG00000025601) #22	EHBP1 (ENSPNAG00000025894) #24	otx1 (ENSPNAG00000025936) #25	WDPCP (ENSPNAG00000025965) #26	MDH1 (ENSPNAG00000006004) #27	ugp2b (ENSPNAG00000026069) #30	peli1b (ENSPNAG00000005864) ##32	ENSPNAG00000026253	ENSPNAG00000004038 #34	ENSPNAG00000026287	ENSPNAG00000026303	ENSPNAG00000026332	pygb (ENSPNAG00000006316)	ENSPNAG00000026487	entpd6 (ENSPNAG00000026516)	ENSPNAG00000026538
Mexicana tetra	MODERN SPECIES	24	gphna (ENSAMXG00000011740)	pals1a (ENSAMXG00000011726)	prox1a (ENSAMXG00000011717)	smyd2a (ENSAMXG00000038767)	ctsba (ENSAMXG00000011699)	ENSAMXG00000033807	ENSAMXG00000011676	vax1 (ENSAMXG00000036022)	ENSAMXG00000035820	atp6v1ba (ENSAMXG00000011653)	shtn1 (ENSAMXG00000011638)	eno4 (ENSAMXG00000011630)	hspa12a (ENSAMXG00000011627)	abhd12 (ENSAMXG00000043906)	ENSAMXG00000029062 #18	b3gnt2b (ENSAMXG00000025419) #22	ENSAMXG00000037682	ENSAMXG00000029465 #24	otx1 (ENSAMXG00000011543) #25	ENSAMXG00000043843 #26	mdh1aa (ENSAMXG00000040846) #27	ugp2b (ENSAMXG00000011506) #30	peli1b (ENSAMXG00000011500) ##32	ENSAMXG00000031371	ENSAMXG00000030790 #34	pygb (ENSAMXG00000011468)	ENSAMXG00000011458	entpd6 (ENSAMXG00000042365)	ENSAMXG00000011442	ube2d1a (ENSAMXG00000036160)	BICC1 (ENSAMXG00000011396)
Electric eel	MODERN SPECIES	291												PDZD8 (ENSEEEG00000004979)	pex13 (ENSEEEG00000004983) #11	SANBR (ENSEEEG00000005004) #12	XPO1 (ENSEEEG00000005037) #17	b3gnt2b (ENSEEEG00000005098) #22	EHBP1 (ENSEEEG00000005099) #24	ENSEEEG00000005100	otx1 (ENSEEEG00000005101) #25	ENSEEEG00000005103 #26	MDH1 (ENSEEEG00000005124) #27	ugp2b (ENSEEEG00000005505) #30	peli1b (ENSEEEG00000005670) ##32	ENSEEEG00000005673	ENSEEEG00000005675 #34	ENSEEEG00000005676	pygb (ENSEEEG00000005688)	ENSEEEG00000005749	entpd6 (ENSEEEG00000005751)	vsx1 (ENSEEEG00000005752)	ENSEEEG00000005754
Cyprinoidei	ANCESTRAL SPECIES	76	ENSGT00940000156169.a.b	ENSGT00950000182946.lb.b	ENSGT00950000183126.b.b	ENSGT00940000163053.c.a	ENSGT00940000154335.b.e	ENSGT00390000009613.a	ENSGT00390000018409.h	ENSGT00940000158306	ENSGT00700000104522	ENSGT00940000157593	ENSGT00390000017746	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t.d.a #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.r #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000174754	ENSGT00940000154186.a.q #34	ENSGT00950000183034.B	ENSGT00940000154531	ENSGT00390000002053	ENSGT00940000165091.d.c	ENSGT00390000010799	ENSGT00390000006218
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	40	ENSGT00940000156169.a.b	ENSGT00950000182946.lb.b.f.a	ENSGT00950000182946.lb.b.f.b	ENSGT00950000183126.b.b.b	ENSGT00940000154335.b.e.a	ENSGT00390000009613.a.v.a	ENSGT00390000018409.h.d	ENSGT00940000158306.v.a	ENSGT00700000104522	ENSGT00940000157593.a	ENSGT00390000017746.g	ENSGT00390000016883.k #11	ENSGT00390000008178.l #12	ENSGT00940000153408.B.t.d.a.b #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q.c #22	ENSGT00940000157597.e.a.b #24	ENSGT00940000161234.a #25	ENSGT00390000016551.j.b #26	ENSGT00390000016551.j.a #26	ENSGT00530000063410.a.r.c.a #27	ENSGT00940000153464.B.z.b.h #30	ENSGT00950000183050.b.b.b.a.a.a.a.b ##32	ENSGT00940000166587.d	ENSGT00940000154186.a.q.e #34	ENSGT00950000183034.B.m	ENSGT00390000002053.c	ENSGT00940000165091.d.c.b	ENSGT00390000010799.l	ENSGT00390000006218.j	ENSGT00530000063557.b.l
Goldfish	MODERN SPECIES	8	adck1 (ENSCARG00000057776)	nrxn3a (ENSCARG00000056966)	ston2 (ENSCARG00000056889)	foxn3 (ENSCARG00000056869)	ENSCARG00000056844	ENSCARG00000056814	dio2 (ENSCARG00000056787)	ENSCARG00000056777	kcnk18 (ENSCARG00000056765)	slc18a2 (ENSCARG00000056744)	PDZD8 (ENSCARG00000056678)	pex13 (ENSCARG00000056657) #11	SANBR (ENSCARG00000056640) #12	XPO1 (ENSCARG00000056366) #17	ENSCARG00000056285	b3gnt2b (ENSCARG00000056269) #22	EHBP1 (ENSCARG00000056251) #24	lpin1a (ENSCARG00000056121)	pfn4 (ENSCARG00000056064)	itsn2b (ENSCARG00000051607)	ENSCARG00000051172	commd9 (ENSCARG00000051147)	rpl13a (ENSCARG00000051111)	atp5if1b (ENSCARG00000051081)	ENSCARG00000051074	zmpste24 (ENSCARG00000050800)	DYNLT1 (ENSCARG00000050782)	ENSCARG00000050744	pomt2 (ENSCARG00000050626)	ENSCARG00000050585	nubpl (ENSCARG00000050449)
Cyprininae_a	ANCESTRAL SPECIES	35	ENSGT00940000156169.a.b	ENSGT00950000182946.lb.b.f.a	ENSGT00950000182946.lb.b.f.b	ENSGT00950000183126.b.b.b	ENSGT00940000154335.b.e.a	ENSGT00390000009613.a.v.a	ENSGT00390000018409.h.d	ENSGT00940000158306.v.a	ENSGT00700000104522	ENSGT00940000157593.a	ENSGT00390000017746.g	ENSGT00390000016883.k #11	ENSGT00390000008178.l #12	ENSGT00940000153408.B.t.d.a.b #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q.c #22	ENSGT00940000157597.e.a.b #24	ENSGT00940000161234.a #25	ENSGT00390000016551.j.b #26	ENSGT00390000016551.j.a #26	ENSGT00530000063410.a.r.c.b #27	ENSGT00940000153464.B.z.b.g #30	ENSGT00950000183050.b.b.b.a.a.a.a.a ##32	ENSGT00940000166587.c	ENSGT00940000154186.a.q.f #34	ENSGT00950000183034.B.n	ENSGT00390000002053.d	ENSGT00940000165091.d.c.a	ENSGT00390000010799.k	ENSGT00390000006218.i	ENSGT00530000063557.b.k
Common carp reference	MODERN SPECIES	30	pank1a (ENSCCRG00000072473)	ENSCCRG00000040972	SLC16A12 (ENSCCRG00000052901)	ENSCCRG00000040975	ENSCCRG00000040984	ptena (ENSCCRG00000040992)	papss2a (ENSCCRG00000055982)	sgms1a (ENSCCRG00000070887)	kcnk18 (ENSCCRG00000013054)	slc18a2 (ENSCCRG00000013071)	PDZD8 (ENSCCRG00000013188)	ENSCCRG00000057670 #12	ENSCCRG00000055884 #17	ENSCCRG00000003451 #18	ENSCCRG00000003438	b3gnt2b (ENSCCRG00000053079) #22	EHBP1 (ENSCCRG00000022494) #24	otx1 (ENSCCRG00000067814) #25	WDPCP (ENSCCRG00000024549) #26	mdh1ab (ENSCCRG00000026888) #27	ugp2b (ENSCCRG00000018829) #30	peli1b (ENSCCRG00000018790) ##32	ENSCCRG00000018709	ENSCCRG00000049285 #34	ENSCCRG00000058941	zmpste24 (ENSCCRG00000057683)	atp5if1b (ENSCCRG00000049269)	rpl13a (ENSCCRG00000031859)	commd9 (ENSCCRG00000049251)	ENSCCRG00000049249	ENSCCRG00000034639
Golden-line barbel	MODERN SPECIES	53	ENSSGRG00000003482	pank1a (ENSSGRG00000003496)	SLC16A12 (ENSSGRG00000003605)	ENSSGRG00000003634	ptena (ENSSGRG00000003648)	papss2a (ENSSGRG00000004155)	minpp1a (ENSSGRG00000008060)	sgms1a (ENSSGRG00000008062)	kcnk18 (ENSSGRG00000008063)	slc18a2 (ENSSGRG00000008065)	PDZD8 (ENSSGRG00000008067)	pex13 (ENSSGRG00000008068) #11	SANBR (ENSSGRG00000008070) #12	XPO1 (ENSSGRG00000008167) #17	ENSSGRG00000009075 #18	b3gnt2b (ENSSGRG00000009076) #22	EHBP1 (ENSSGRG00000009079) #24	otx1 (ENSSGRG00000009093) #25	ENSSGRG00000009096 #26	mdh1ab (ENSSGRG00000009100) #27	ugp2b (ENSSGRG00000009223) #30	peli1b (ENSSGRG00000009965) ##32	ENSSGRG00000009966	ENSSGRG00000009968 #34	RLF (ENSSGRG00000009969)	DYNLT1 (ENSSGRG00000010041)	atp5if1b (ENSSGRG00000010042)	rpl13a (ENSSGRG00000010044)	commd9 (ENSSGRG00000010076)	ENSSGRG00000010077	MAP4K3 (ENSSGRG00000010116)
Cyprininae	ANCESTRAL SPECIES	313	ENSGT00940000155989.e.d	ENSGT01010000222287.B.a.a.a.a.a.a.a	ENSGT00940000165449	ENSGT00940000157373.l.g	ENSGT00950000183126.b.b.a	ENSGT00940000163053.c.a	ENSGT00390000009613.a.v.b	ENSGT00390000018409.h.c	ENSGT00940000158306.v.b	ENSGT00940000165789	ENSGT00940000157593.b	ENSGT00390000017746.h	ENSGT00390000016883.l #11	ENSGT00390000008178.k #12	ENSGT00940000153408.B.t.d.a.a #17	ENSGT00940000155345.q.d #22	ENSGT00940000157597.e.b #24	ENSGT00940000161234.b #25	ENSGT00390000016551.i #26
Cyprininae_a	ANCESTRAL SPECIES	304	ENSGT00940000155989.e.d	ENSGT01010000222287.B.a.a.a.a.a.a.a	ENSGT00940000165449	ENSGT00940000157373.l.g	ENSGT00950000183126.b.b.a	ENSGT00940000154335.b.e.b	ENSGT00390000009613.a.v.b	ENSGT00390000018409.h.c	ENSGT00940000158306.v.b	ENSGT00940000165789	ENSGT00940000157593.b	ENSGT00390000017746.h	ENSGT00390000016883.l #11	ENSGT00390000008178.k #12	ENSGT00940000153408.B.t.d.a.a #17	ENSGT00940000155345.q.d #22	ENSGT00940000157597.e.a.a.a #24	ENSGT00940000161234.b #25	ENSGT00390000016551.i #26
Golden-line barbel	MODERN SPECIES	17	ANKRD1 (ENSSGRG00000001024)	ENSSGRG00000001033	zgc:65997 (ENSSGRG00000001035)	zgc:65997 (ENSSGRG00000001038)	pank1a (ENSSGRG00000001051)	ENSSGRG00000001058	ptena (ENSSGRG00000001060)	papss2a (ENSSGRG00000001415)	minpp1a (ENSSGRG00000004678)	sgms1a (ENSSGRG00000004680)	ENSSGRG00000004682	slc18a2 (ENSSGRG00000004688)	PDZD8 (ENSSGRG00000004690)	SANBR (ENSSGRG00000004691) #12	XPO1 (ENSSGRG00000004767) #17	b3gnt2b (ENSSGRG00000006584) #22	EHBP1 (ENSSGRG00000006607) #24	otx1 (ENSSGRG00000007339) #25	ENSSGRG00000007348 #26
Common carp reference	MODERN SPECIES	4	ENSCCRG00000082306	zgc:65997 (ENSCCRG00000070786)	pank1a (ENSCCRG00000027871)	ENSCCRG00000055135	ptena (ENSCCRG00000077527)	papss2a (ENSCCRG00000027413)	minpp1a (ENSCCRG00000027401)	sgms1a (ENSCCRG00000027300)	ENSCCRG00000080142	slc18a2 (ENSCCRG00000027262)	ENSCCRG00000027247	pex13 (ENSCCRG00000003017) #11	ENSCCRG00000002941 #12	ENSCCRG00000003107 #17	ENSCCRG00000073128	b3gnt2b (ENSCCRG00000082775) #22	ENSCCRG00000061352 #18	EHBP1 (ENSCCRG00000072862) #24	ENSCCRG00000073238	otx1 (ENSCCRG00000063935) #25	mdh1ab (ENSCCRG00000056932) #27	ugp2b (ENSCCRG00000024567) #30	peli1b (ENSCCRG00000024542) ##32	ENSCCRG00000013690	ENSCCRG00000013697 #34	ENSCCRG00000058947	zmpste24 (ENSCCRG00000065255)	ENSCCRG00000034282	rpl13a (ENSCCRG00000034266)	commd9 (ENSCCRG00000034261)	ENSCCRG00000034259
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	162																b3gnt2b (ENSCARG00000061036) #22
Goldfish	MODERN SPECIES	3393																b3gnt2b (ENSCARG00000043263) #22
Zebrafish	MODERN SPECIES	8	ifit15 (ENSDARG00000043584)	ifit14 (ENSDARG00000071012)	ENSDARG00000043586	ptena (ENSDARG00000071018)	papss2a (ENSDARG00000071021)	minpp1a (ENSDARG00000057058)	sgms1a (ENSDARG00000057053)	kcnk18 (ENSDARG00000057049)	slc18a2 (ENSDARG00000015110)	PDZD8 (ENSDARG00000088699)	pex13 (ENSDARG00000071037) #11	SANBR (ENSDARG00000079857) #12	XPO1 (ENSDARG00000063229) #17	ENSDARG00000097418	ENSDARG00000086305	b3gnt2b (ENSDARG00000091902) #22	EHBP1 (ENSDARG00000043643) #24	otx1 (ENSDARG00000094992) #25	WDPCP (ENSDARG00000074590) #26	mdh1ab (ENSDARG00000103849) #27	ugp2b (ENSDARG00000008200) #30	peli1b (ENSDARG00000044083) ##32	ENSDARG00000071341	ENSDARG00000071347 #34	ENSDARG00000116881	ENSDARG00000063553	DYNLT1 (ENSDARG00000094627)	zmpste24 (ENSDARG00000044090)	atp5if1b (ENSDARG00000044092)	rpl13a (ENSDARG00000044093)	commd9 (ENSDARG00000094258)
Euteleosteomorpha	ANCESTRAL SPECIES	207										ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.s.a #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Acanthomorphata	ANCESTRAL SPECIES	114															ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000168989	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c
Cod	MODERN SPECIES	6	il22ra2 (ENSGMOG00000033343)	ENSGMOG00000018465	ENSGMOG00000026043	ENSGMOG00000018475	ENSGMOG00000018483	ENSGMOG00000026709	adss2 (ENSGMOG00000016228)	ENSGMOG00000018736	ENSGMOG00000033295	zbtb18 (ENSGMOG00000022213)	akt3a (ENSGMOG00000018728)	ENSGMOG00000018755	ENSGMOG00000011835	ENSGMOG00000033248 #18	ENSGMOG00000033992	b3gnt2b (ENSGMOG00000020567) #22	EHBP1 (ENSGMOG00000024335) #24	otx1 (ENSGMOG00000036614) #25	WDPCP (ENSGMOG00000013821) #26	MDH1 (ENSGMOG00000013993) #27	ENSGMOG00000014017	ENSGMOG00000036784	ENSGMOG00000034684	ENSGMOG00000034181	ENSGMOG00000028188	ENSGMOG00000023042	ENSGMOG00000033799	ENSGMOG00000031563	ENSGMOG00000027555	ENSGMOG00000024266	ENSGMOG00000031772
Euacanthomorphacea	ANCESTRAL SPECIES	57													ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Pinecone sodierfish	MODERN SPECIES	6	ENSMMDG00005022054	ENSMMDG00005022059	ENSMMDG00005022062	ENSMMDG00005022066	GPR155 (ENSMMDG00005022076)	tmem41ab (ENSMMDG00005022090)	cdh5 (ENSMMDG00005001225)	mtx2 (ENSMMDG00005001248)	ENSMMDG00005001267	ENSMMDG00005001290	ENSMMDG00005001306	ENSMMDG00005001408	ciao2b (ENSMMDG00005001424)	ENSMMDG00005001501	ENSMMDG00005002044	b3gnt2b (ENSMMDG00005002046) #22	EHBP1 (ENSMMDG00005002064) #24	ENSMMDG00005002101	otx1 (ENSMMDG00005002103) #25	WDPCP (ENSMMDG00005002107) #26	MDH1 (ENSMMDG00005002128) #27	ugp2b (ENSMMDG00005002214) #30	peli1b (ENSMMDG00005004574) ##32	ENSMMDG00005004598	lgalslb (ENSMMDG00005004651) #33	ENSMMDG00005004660	ENSMMDG00005004671 #34	ACTR2 (ENSMMDG00005004705)	SPRED2 (ENSMMDG00005005012)	meis1b (ENSMMDG00005005050)	ENSMMDG00005005164
Percomorphaceae	ANCESTRAL SPECIES	46	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Tiger tail seahorse	MODERN SPECIES	363	pank1a (ENSHCOG00000014434)	SLC16A12 (ENSHCOG00000014460)	actr2a (ENSHCOG00000014491)	SPRED2 (ENSHCOG00000014521)	meis1b (ENSHCOG00000014553)	c1d (ENSHCOG00000014568)	c1d (ENSHCOG00000014589)	dnaaf10 (ENSHCOG00000014596)	pno1 (ENSHCOG00000014618)	ENSHCOG00000014627	cnrip1b (ENSHCOG00000000405)	KCNQ5 (ENSHCOG00000014664)	ddx43 (ENSHCOG00000014704)	eef1a1b (ENSHCOG00000014718)	slc17a5 (ENSHCOG00000014744)	b3gnt2b (ENSHCOG00000014754) #22	EHBP1 (ENSHCOG00000014911) #24	otx1 (ENSHCOG00000014924) #25	WDPCP (ENSHCOG00000000697) #26	mdh1aa (ENSHCOG00000015008) #27	ugp2b (ENSHCOG00000015044) #30	peli1b (ENSHCOG00000015073) ##32	ENSHCOG00000015117	lgalslb (ENSHCOG00000015138) #33	ciao2b (ENSHCOG00000015153)	ENSHCOG00000015156	ENSHCOG00000015184
Percomorphaceae_B	ANCESTRAL SPECIES	4	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c
Ovalentaria	ANCESTRAL SPECIES	18	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c
Atherinomorphae	ANCESTRAL SPECIES	16	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
Cyprinodontiformes	ANCESTRAL SPECIES	17				ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c
Aplocheiloidei	ANCESTRAL SPECIES	22	ENSGT01050000244827.E	ENSGT00940000163653	ENSGT00940000155933.b.a	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000177342.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a.d.b	ENSGT00940000177700	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Mangrove rivulus	MODERN SPECIES	3	CGAS (ENSKMAG00000016190)	ddx43 (ENSKMAG00000016167)	KCNQ5 (ENSKMAG00000016142)	ENSKMAG00000016129	ENSKMAG00000016114	mtx2 (ENSKMAG00000016098)	cdh5 (ENSKMAG00000016073)	ENSKMAG00000016061	tmem41ab (ENSKMAG00000016045)	GPR155 (ENSKMAG00000015977)	ENSKMAG00000015949	ciao2b (ENSKMAG00000015929)	ENSKMAG00000015858	ENSKMAG00000015830	ENSKMAG00000015815 #18	b3gnt2b (ENSKMAG00000015797) #22	EHBP1 (ENSKMAG00000015630) #24	otx1 (ENSKMAG00000015570) #25	WDPCP (ENSKMAG00000015541) #26	mdh1aa (ENSKMAG00000015513) #27	ugp2b (ENSKMAG00000015475) #30	peli1b (ENSKMAG00000015451) ##32	ENSKMAG00000015381	lgalslb (ENSKMAG00000015333) #33	ENSKMAG00000015310	ENSKMAG00000015301	ENSKMAG00000015281	actr2a (ENSKMAG00000015243)	SPRED2 (ENSKMAG00000015205)	meis1b (ENSKMAG00000015139)	ENSKMAG00000015108
Turquoise killifish	MODERN SPECIES	1612	ENSNFUG00015024354	SPRED2A (ENSNFUG00015024353)	ACTR2 (ENSNFUG00015024344)	AFTPHA (ENSNFUG00015024338)	ENSNFUG00015024333	lgalslb (ENSNFUG00015024326) #33	ENSNFUG00015024317	PELI1B (ENSNFUG00015024315) ##32	ugp2b (ENSNFUG00015024190) #30	mdh1aa (ENSNFUG00015024144) #27	ENSNFUG00015024137	WDPCP (ENSNFUG00015024135) #26	OTX1B (ENSNFUG00015024133) #25	ENSNFUG00015024132	EHBP1 (ENSNFUG00015024071) #24	B3GNT2B (ENSNFUG00015024061) #22	ENSNFUG00015024060	ENSNFUG00015024057	VDAC2 (ENSNFUG00015023972)	ENSNFUG00015023949	comtd1 (ENSNFUG00015023943)	ENSNFUG00015023938	OPRD1B (ENSNFUG00015023936)	tcea3 (ENSNFUG00015023905)	lrmda (ENSNFUG00015023874)	KCNMA1 (ENSNFUG00015023512)	ENSNFUG00015023481	DLG5A (ENSNFUG00015022897)	anxa11a (ENSNFUG00015022573)	ZCCHC24 (ENSNFUG00015022554)	ppifa (ENSNFUG00015022549)
Cyprinodontoidei	ANCESTRAL SPECIES	14					ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
NAME_4	ANCESTRAL SPECIES	132						ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
Sheepshead minnow	MODERN SPECIES	569															ENSCVAG00000004877	b3gnt2b (ENSCVAG00000004788) #22	EHBP1 (ENSCVAG00000000800) #24	otx1 (ENSCVAG00000004584) #25	ENSCVAG00000004576 #26	MDH1 (ENSCVAG00000004563) #27	ENSCVAG00000004517	ugp2b (ENSCVAG00000004512) #30
Mummichog	MODERN SPECIES	2306	ENSFHEG00000011907	epas1b (ENSFHEG00000011885)	ENSFHEG00000011632	ENSFHEG00000011622	lhb (ENSFHEG00000011602)	ENSFHEG00000011583	ENSFHEG00000011575	mtx2 (ENSFHEG00000011569)	cdh5 (ENSFHEG00000011531)	ENSFHEG00000011472	ENSFHEG00000011437	tmem41ab (ENSFHEG00000011397)	GPR155 (ENSFHEG00000000881)	ENSFHEG00000011361	ciao2b (ENSFHEG00000000703)	b3gnt2b (ENSFHEG00000011347) #22	EHBP1 (ENSFHEG00000000256) #24	otx1 (ENSFHEG00000011199) #25	ENSFHEG00000011182 #26	WDPCP (ENSFHEG00000011173) #26	MDH1 (ENSFHEG00000011156) #27	ugp2b (ENSFHEG00000011098) #30	peli1b (ENSFHEG00000011027) ##32	ENSFHEG00000010952	lgalslb (ENSFHEG00000010890) #33	ENSFHEG00000010885	ENSFHEG00000010883	ENSFHEG00000010874	ENSFHEG00000010863 #34	actr2a (ENSFHEG00000010852)	ENSFHEG00000010786
Poeciliinae	ANCESTRAL SPECIES	16	ENSGT00940000164095.a	ENSGT00940000164611.a.b	ENSGT00940000158698	ENSGT00390000009155	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00740000115593	ENSGT01030000234610.b.a.b.b	ENSGT00940000153566.b	ENSGT00530000068411	ENSGT00940000154866.B.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000157361.b	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l.q	ENSGT00390000009597.c
Poecilia	ANCESTRAL SPECIES	11	ENSGT00940000164611.a.b	ENSGT00940000158698	ENSGT00390000009155	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00740000115593	ENSGT01030000234610.b.a.b.b	ENSGT00940000153566.b	ENSGT00530000068411	ENSGT00940000154866.B.a	ENSGT01030000234532.A.a.a.b.j.a	ENSGT00940000157361.b	ENSGT00390000017697.b	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.a.a.a	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l.q	ENSGT00390000009597.c
NAME_6	ANCESTRAL SPECIES	275												ENSGT00940000157361.b	ENSGT00390000017697.b	ENSGT01090000260059.a.b.b.a.a.a.a.a.a.b.a.g.a.a.b.a.a.a.a	ENSGT00940000160228.i.a.a	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000164807.G.a.a.b	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l.q
Amazon molly	MODERN SPECIES	561											ENSPFOG00000002842	ciao2b (ENSPFOG00000002792)	ENSPFOG00000020668	ENSPFOG00000002782	ENSPFOG00000024641	b3gnt2b (ENSPFOG00000020667) #22	EHBP1 (ENSPFOG00000002281) #24	otx1 (ENSPFOG00000002237) #25	WDPCP (ENSPFOG00000001995) #26	MDH1 (ENSPFOG00000001834) #27	ugp2b (ENSPFOG00000001695) #30	peli1b (ENSPFOG00000001528) ##32	ENSPFOG00000001393	lgalslb (ENSPFOG00000001307) #33	ENSPFOG00000001282	ENSPFOG00000023762	actr2a (ENSPFOG00000001196)	SPRED2 (ENSPFOG00000001081)
Sailfin molly	MODERN SPECIES	38																b3gnt2b (ENSPLAG00000019544) #22	EHBP1 (ENSPLAG00000019645) #24	otx1 (ENSPLAG00000019667) #25	ENSPLAG00000019683 #26	MDH1 (ENSPLAG00000019698) #27	ugp2b (ENSPLAG00000019720) #30	peli1b (ENSPLAG00000019732) ##32	ENSPLAG00000019777	lgalslb (ENSPLAG00000019781) #33	ENSPLAG00000019786	ENSPLAG00000019792	ENSPLAG00000019804 #34	actr2a (ENSPLAG00000019837)	SPRED2 (ENSPLAG00000019851)	MEIS1 (ENSPLAG00000019858)
Guppy	MODERN SPECIES	445	tlx1 (ENSPREG00000020203)	ENSPREG00000020277	ENSPREG00000020295	rab1ab (ENSPREG00000020321)	hells (ENSPREG00000020337)	CALHM3 (ENSPREG00000020384)	ncapd3 (ENSPREG00000020416)	ENSPREG00000020540	RIN2 (ENSPREG00000020566)	ENSPREG00000020598	ENSPREG00000020614	ENSPREG00000020631	ciao2b (ENSPREG00000020644)	ENSPREG00000020655	ENSPREG00000020793	b3gnt2b (ENSPREG00000021300) #22	EHBP1 (ENSPREG00000021321) #24	otx1 (ENSPREG00000021337) #25	WDPCP (ENSPREG00000021349) #26	MDH1 (ENSPREG00000021368) #27	ugp2b (ENSPREG00000021393) #30	peli1b (ENSPREG00000021412) ##32	ENSPREG00000021444	lgalslb (ENSPREG00000021476) #33	ENSPREG00000021483	ENSPREG00000021487 #34	actr2a (ENSPREG00000000566)	SPRED2 (ENSPREG00000000651)	meis1b (ENSPREG00000000691)	ENSPREG00000000726	c1d (ENSPREG00000000742)
Platyfish	MODERN SPECIES	14	ENSXMAG00000020837	tlx1 (ENSXMAG00000005769)	ENSXMAG00000021357	ENSXMAG00000021554	rab1ab (ENSXMAG00000005757)	hells (ENSXMAG00000005731)	CALHM3 (ENSXMAG00000005726)	ncapd3 (ENSXMAG00000005697)	ENSXMAG00000022977	RIN2 (ENSXMAG00000023405)	ENSXMAG00000005661	ENSXMAG00000005660	ENSXMAG00000005658	ciao2b (ENSXMAG00000005652)	ENSXMAG00000005623	b3gnt2b (ENSXMAG00000019808) #22	EHBP1 (ENSXMAG00000005611) #24	otx1 (ENSXMAG00000005604) #25	WDPCP (ENSXMAG00000005591) #26	MDH1 (ENSXMAG00000005571) #27	ugp2b (ENSXMAG00000005551) #30	ENSXMAG00000027229	peli1b (ENSXMAG00000022686) ##32	lgalslb (ENSXMAG00000011845) #33	ENSXMAG00000029735	ENSXMAG00000025365	ENSXMAG00000029191 #34	actr2a (ENSXMAG00000011813)	SPRED2 (ENSXMAG00000011804)	ENSXMAG00000029931	meis1b (ENSXMAG00000011739)
Oryzias	ANCESTRAL SPECIES	6	ENSGT00950000183148.b.b	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00950000183175.A.c	ENSGT00940000170913	ENSGT00940000155571.A	ENSGT00440000033965	ENSGT01100000263502.B.a.a.d.b.c.a	ENSGT00940000154877.B	ENSGT00940000156225	ENSGT00950000182812.C	ENSGT00940000157820.a.b.cb	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT01100000263533.b.a.a.a	ENSGT00940000155337.ab #33	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT01030000235154	ENSGT00390000015405	ENSGT00950000183091.A.b
Oryzias_b	ANCESTRAL SPECIES	7	ENSGT00950000183165.b.a.e.b.d.b	ENSGT00950000183165.b.a.e.a	ENSGT00950000183148.b.b	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00950000183175.A.c	ENSGT00940000170913	ENSGT00440000033965	ENSGT01100000263502.B.a.a.d.b.c.a	ENSGT00940000154877.B	ENSGT00940000156225	ENSGT00950000182812.C	ENSGT00940000157820.a.b.cb	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT01030000235154	ENSGT00390000015405
Indian medaka	MODERN SPECIES	27	pygb (ENSOMEG00000022587)	abhd12 (ENSOMEG00000022600)	gins1 (ENSOMEG00000022610)	ninl (ENSOMEG00000022666)	SNCG (ENSOMEG00000022691)	ENSOMEG00000022699	ENSOMEG00000022707	prorsd1 (ENSOMEG00000022715)	OPN4 (ENSOMEG00000022728)	ldb3a (ENSOMEG00000022787)	bmpr1aa (ENSOMEG00000022835)	ENSOMEG00000022851	rps27a (ENSOMEG00000022866)	ENSOMEG00000000614	ENSOMEG00000022888 #18	b3gnt2b (ENSOMEG00000022896) #22	EHBP1 (ENSOMEG00000022982) #24	otx1 (ENSOMEG00000023010) #25	WDPCP (ENSOMEG00000023058) #26	MDH1 (ENSOMEG00000023091) #27	ugp2b (ENSOMEG00000023112) #30	peli1b (ENSOMEG00000023127) ##32	ENSOMEG00000023167	ENSOMEG00000023188	lgalslb (ENSOMEG00000023198) #33	actr2a (ENSOMEG00000023221)	SPRED2 (ENSOMEG00000023237)	ENSOMEG00000023245	ikzf1 (ENSOMEG00000023255)	fignl1 (ENSOMEG00000023258)	ttl (ENSOMEG00000023276)
Javanese ricefish	MODERN SPECIES	6	ENSOJAG00000005779	pygb (ENSOJAG00000003877)	abhd12 (ENSOJAG00000003496)	gins1 (ENSOJAG00000003478)	ninl (ENSOJAG00000003447)	SNCG (ENSOJAG00000003429)	ENSOJAG00000003409	ENSOJAG00000003378	ENSOJAG00000003326	prorsd1 (ENSOJAG00000003319)	OPN4 (ENSOJAG00000003269)	ldb3a (ENSOJAG00000003132)	bmpr1aa (ENSOJAG00000002628)	rps27a (ENSOJAG00000002458)	ENSOJAG00000002448	b3gnt2b (ENSOJAG00000002438) #22	ENSOJAG00000002417	ENSOJAG00000002407	EHBP1 (ENSOJAG00000002231) #24	otx1 (ENSOJAG00000002138) #25	ENSOJAG00000002126	ENSOJAG00000002113	WDPCP (ENSOJAG00000002012) #26	MDH1 (ENSOJAG00000001886) #27	ugp2b (ENSOJAG00000001808) #30	peli1b (ENSOJAG00000001747) ##32	ENSOJAG00000020511	lgalslb (ENSOJAG00000020506) #33	actr2a (ENSOJAG00000020442)	SPRED2 (ENSOJAG00000020417)	meis1b (ENSOJAG00000020400)
Oryzias_a	ANCESTRAL SPECIES	4	ENSGT00950000183148.b.b	ENSGT00940000166409	ENSGT00390000013968	ENSGT00660000095541.a.a	ENSGT00950000183175.A.c	ENSGT00940000170913	ENSGT00940000155571.A	ENSGT00440000033965	ENSGT01100000263502.B.a.a.d.b.c.a	ENSGT00940000154877.B	ENSGT00940000156225	ENSGT00950000182812.C	ENSGT00940000157820.a.b.cb	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT01100000263533.b.a.a.a	ENSGT00940000155337.ab #33	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT01030000235154	ENSGT00390000015405	ENSGT00950000183091.A.b
Chinese medaka	MODERN SPECIES	794																b3gnt2b (ENSOSIG00000009174) #22	EHBP1 (ENSOSIG00000009187) #24	otx1 (ENSOSIG00000009211) #25	WDPCP (ENSOSIG00000009212) #26	MDH1 (ENSOSIG00000009213) #27	ENSOSIG00000009345	peli1b (ENSOSIG00000009346) ##32	ENSOSIG00000009349	LGALSL (ENSOSIG00000009371) #33	actr2a (ENSOSIG00000009372)	SPRED2 (ENSOSIG00000009377)	ENSOSIG00000009379	ENSOSIG00000009381	c1d (ENSOSIG00000009385)	dnaaf10 (ENSOSIG00000009388)	pno1 (ENSOSIG00000009390)
Japanese Medaka HdrR	MODERN SPECIES	6	abhd12 (ENSORLG00000002780)	gins1 (ENSORLG00000002756)	ninl (ENSORLG00000002727)	sncga (ENSORLG00000002687)	ENSORLG00000028949	ENSORLG00000002678	prorsd1 (ENSORLG00000025145)	OPN4 (ENSORLG00000002633)	ldb3a (ENSORLG00000002622)	bmpr1aa (ENSORLG00000002596)	ENSORLG00000028617	rps27a (ENSORLG00000029546)	ENSORLG00000030264	ENSORLG00000024628	ENSORLG00000002570 #18	b3gnt2b (ENSORLG00000002565) #22	EHBP1 (ENSORLG00000002562) #24	otx1 (ENSORLG00000028142) #25	WDPCP (ENSORLG00000029431) #26	mdh1ab (ENSORLG00000002524) #27	ugp2b (ENSORLG00000002512) #30	peli1b (ENSORLG00000002477) ##32	ENSORLG00000027511	ENSORLG00000022965	lgalslb (ENSORLG00000028938) #33	actr2a (ENSORLG00000002451)	SPRED2 (ENSORLG00000002435)	meis1b (ENSORLG00000002411)	ENSORLG00000023223	ENSORLG00000026767	ENSORLG00000030003
Ovalentaria_B	ANCESTRAL SPECIES	7	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Cichlidae	ANCESTRAL SPECIES	13	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Pseudocrenilabrinae	ANCESTRAL SPECIES	16	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	11	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Haplochromini	ANCESTRAL SPECIES	10	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Haplochromini_A	ANCESTRAL SPECIES	8	ENSGT00940000178688	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405	ENSGT00950000183091.A.b
P. nyererei	MODERN SPECIES	349	MCM8 (ENSPNYG00000006824)	ENSPNYG00000006866	cdh11 (ENSPNYG00000006880)	chrna1 (ENSPNYG00000006909)	ENSPNYG00000006941	ENSPNYG00000006956	ENSPNYG00000007006	mtx2 (ENSPNYG00000007071)	cdh5 (ENSPNYG00000007107)	ENSPNYG00000007119	tmem41ab (ENSPNYG00000007133)	GPR155 (ENSPNYG00000007158)	wipf1a (ENSPNYG00000007173)	ciao2b (ENSPNYG00000007207)	ENSPNYG00000007421	b3gnt2b (ENSPNYG00000008156) #22	EHBP1 (ENSPNYG00000008205) #24	otx1 (ENSPNYG00000008345) #25	ENSPNYG00000008363 #26	MDH1 (ENSPNYG00000008390) #27	ugp2b (ENSPNYG00000008441) #30	peli1b (ENSPNYG00000008495) ##32	ENSPNYG00000008530	lgalslb (ENSPNYG00000008578) #33	ENSPNYG00000008600 #34	actr2a (ENSPNYG00000008624)	SPRED2 (ENSPNYG00000008682)	meis1b (ENSPNYG00000008708)	ENSPNYG00000008745	ENSPNYG00000008771	c1d (ENSPNYG00000008789)
Haplochromini_B	ANCESTRAL SPECIES	5	ENSGT00940000178688	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405	ENSGT00950000183091.A.b
Zebra mbuna	MODERN SPECIES	1095	cdh11 (ENSMZEG00005027311)	chrna1 (ENSMZEG00005027312)	ENSMZEG00005027313	ENSMZEG00005027314	ENSMZEG00005027316	mtx2 (ENSMZEG00005027317)	cdh5 (ENSMZEG00005027318)	ENSMZEG00005027319	ENSMZEG00005027320	tmem41ab (ENSMZEG00005027321)	GPR155 (ENSMZEG00005027322)	wipf1a (ENSMZEG00005027323)	ciao2b (ENSMZEG00005027324)	ENSMZEG00005027325	ENSMZEG00005027326 #18	b3gnt2b (ENSMZEG00005027327) #22	EHBP1 (ENSMZEG00005027328) #24	ENSMZEG00005027329	otx1 (ENSMZEG00005027330) #25	WDPCP (ENSMZEG00005027331) #26	MDH1 (ENSMZEG00005027332) #27	ugp2b (ENSMZEG00005027333) #30	peli1b (ENSMZEG00005027334) ##32	ENSMZEG00005027335	lgalslb (ENSMZEG00005027336) #33	ENSMZEG00005027337 #34	actr2a (ENSMZEG00005027338)	SPRED2 (ENSMZEG00005027339)	meis1b (ENSMZEG00005027341)	ENSMZEG00005027342	c1d (ENSMZEG00005027343)
Eastern happy	MODERN SPECIES	4	cdh11 (ENSACLG00000026983)	chrna1 (ENSACLG00000026947)	ENSACLG00000026928	ENSACLG00000026925	ENSACLG00000026918	mtx2 (ENSACLG00000026900)	cdh5 (ENSACLG00000026891)	ENSACLG00000026887	ENSACLG00000026881	tmem41ab (ENSACLG00000026863)	GPR155 (ENSACLG00000026841)	wipf1a (ENSACLG00000026823)	ciao2b (ENSACLG00000026816)	ENSACLG00000026798	ENSACLG00000026787 #18	b3gnt2b (ENSACLG00000026781) #22	EHBP1 (ENSACLG00000026697) #24	otx1 (ENSACLG00000026686) #25	WDPCP (ENSACLG00000026647) #26	MDH1 (ENSACLG00000026557) #27	ugp2b (ENSACLG00000026535) #30	peli1b (ENSACLG00000026494) ##32	ENSACLG00000026411	lgalslb (ENSACLG00000026386) #33	ENSACLG00000026357	actr2a (ENSACLG00000026334)	SPRED2 (ENSACLG00000026311)	meis1b (ENSACLG00000026249)	ENSACLG00000026219	c1d (ENSACLG00000026206)	dnaaf10 (ENSACLG00000026190)
Burton s mouthbrooder	MODERN SPECIES	318	cdh11 (ENSHBUG00000017576)	chrna1 (ENSHBUG00000017612)	ENSHBUG00000017633	ENSHBUG00000017648	ENSHBUG00000017792	mtx2 (ENSHBUG00000017811)	cdh5 (ENSHBUG00000017838)	ENSHBUG00000017845	tmem41ab (ENSHBUG00000017882)	GPR155 (ENSHBUG00000017909)	ENSHBUG00000017927	ENSHBUG00000017937	ciao2b (ENSHBUG00000017958)	ENSHBUG00000017992	ENSHBUG00000018008 #18	b3gnt2b (ENSHBUG00000018017) #22	EHBP1 (ENSHBUG00000018080) #24	otx1 (ENSHBUG00000018104) #25	WDPCP (ENSHBUG00000018121) #26	MDH1 (ENSHBUG00000001045) #27	ugp2b (ENSHBUG00000018209) #30	peli1b (ENSHBUG00000018272) ##32	ENSHBUG00000018319	lgalslb (ENSHBUG00000018349) #33	ENSHBUG00000018356	ENSHBUG00000018375 #34	actr2a (ENSHBUG00000018399)	SPRED2 (ENSHBUG00000018425)	meis1b (ENSHBUG00000018510)	ENSHBUG00000018526	c1d (ENSHBUG00000018531)
Lyretail cichlid	MODERN SPECIES	295	ENSNBRG00000009141	crls1 (ENSNBRG00000009160)	MCM8 (ENSNBRG00000009201)	cdh11 (ENSNBRG00000009299)	chrna1 (ENSNBRG00000009347)	ENSNBRG00000009387	ENSNBRG00000009407	ENSNBRG00000009484	mtx2 (ENSNBRG00000009500)	cdh5 (ENSNBRG00000009513)	ENSNBRG00000009525	tmem41ab (ENSNBRG00000009547)	ENSNBRG00000009564	ciao2b (ENSNBRG00000009588)	ENSNBRG00000009721	b3gnt2b (ENSNBRG00000010244) #22	EHBP1 (ENSNBRG00000010267) #24	otx1 (ENSNBRG00000010309) #25	WDPCP (ENSNBRG00000010324) #26	MDH1 (ENSNBRG00000010369) #27	ugp2b (ENSNBRG00000010404) #30	peli1b (ENSNBRG00000010433) ##32	ENSNBRG00000010455	lgalslb (ENSNBRG00000010508) #33	ENSNBRG00000010532 #34	actr2a (ENSNBRG00000010551)	SPRED2 (ENSNBRG00000010593)	meis1b (ENSNBRG00000010657)	ENSNBRG00000010688	c1d (ENSNBRG00000010704)	dnaaf10 (ENSNBRG00000010737)
Nile tilapia	MODERN SPECIES	4	cdh11 (ENSONIG00000001364)	chrna1 (ENSONIG00000001353)	ENSONIG00000001346	ENSONIG00000036413	ENSONIG00000039782	mtx2 (ENSONIG00000001332)	cdh5 (ENSONIG00000001324)	ENSONIG00000026582	tmem41ab (ENSONIG00000001320)	GPR155 (ENSONIG00000001317)	wipf1 (ENSONIG00000001313)	ciao2b (ENSONIG00000001310)	ENSONIG00000001289	ENSONIG00000035344	ENSONIG00000034429 #18	b3gnt2b (ENSONIG00000020730) #22	EHBP1 (ENSONIG00000001281) #24	otx1 (ENSONIG00000035027) #25	WDPCP (ENSONIG00000001271) #26	mdh1aa (ENSONIG00000001264) #27	ugp2b (ENSONIG00000001254) #30	peli1b (ENSONIG00000027571) ##32	ENSONIG00000041039	ENSONIG00000028845	ENSONIG00000039915	ENSONIG00000040742	ENSONIG00000004918	ENSONIG00000039754	ENSONIG00000032553	ENSONIG00000008025	lgalslb (ENSONIG00000001248) #33
Midas cichlid	MODERN SPECIES	230	chrna1 (ENSACIG00000013945)	ENSACIG00000013911	ENSACIG00000013893	ENSACIG00000013877	mtx2 (ENSACIG00000013757)	ENSACIG00000013685	ENSACIG00000013670	ENSACIG00000013609	tmem41ab (ENSACIG00000013588)	GPR155 (ENSACIG00000013555)	ENSACIG00000013460	ciao2b (ENSACIG00000013440)	ENSACIG00000013207	ENSACIG00000013085	ENSACIG00000013066	b3gnt2b (ENSACIG00000013061) #22	EHBP1 (ENSACIG00000013008) #24	otx1 (ENSACIG00000012995) #25	WDPCP (ENSACIG00000012952) #26	MDH1 (ENSACIG00000012929) #27	ugp2b (ENSACIG00000012903) #30	peli1b (ENSACIG00000012890) ##32	ENSACIG00000012854	lgalslb (ENSACIG00000012830) #33	ENSACIG00000012820 #34	actr2a (ENSACIG00000012799)	SPRED2 (ENSACIG00000012773)	meis1b (ENSACIG00000012745)	ENSACIG00000012728	c1d (ENSACIG00000012684)	dnaaf10 (ENSACIG00000012570)
Pomacentridae	ANCESTRAL SPECIES	224														ENSGT00940000160228.i.a.a.c	ENSGT00940000177342.a	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30
Pomacentridae_A	ANCESTRAL SPECIES	104																ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000182958.b.a.b.m.a.a.a	ENSGT00730000111005	ENSGT00940000155683	ENSGT00530000063692.b	ENSGT00950000183154.a.b	ENSGT00390000016757	ENSGT00940000177019	ENSGT00940000157373.l	ENSGT00940000165449	ENSGT00390000007701
Amphiprion	ANCESTRAL SPECIES																	ENSGT00940000155345.q #22
Clown anemonefish	MODERN SPECIES	2648																b3gnt2b (ENSAOCG00000023686) #22
Spiny chromis	MODERN SPECIES	66																b3gnt2b (ENSAPOG00000005146) #22	EHBP1 (ENSAPOG00000005245) #24	otx1 (ENSAPOG00000005278) #25	WDPCP (ENSAPOG00000005298) #26	MDH1 (ENSAPOG00000005335) #27	ugp2b (ENSAPOG00000005410) #30	desi2 (ENSAPOG00000005457)	MTRF1L (ENSAPOG00000005515)	fbxo5 (ENSAPOG00000005525)	vip (ENSAPOG00000005552)	ANAPC1 (ENSAPOG00000005760)	ENSAPOG00000005801	ENSAPOG00000005837	zgc:65997 (ENSAPOG00000005863)	ENSAPOG00000005883	ENSAPOG00000005898
Bicolor damselfish	MODERN SPECIES	726														ENSSPAG00000009211	ENSSPAG00000009203	b3gnt2b (ENSSPAG00000009196) #22	EHBP1 (ENSSPAG00000009007) #24	otx1 (ENSSPAG00000008986) #25
Percomorphaceae_C	ANCESTRAL SPECIES	18	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c
Eupercaria	ANCESTRAL SPECIES	15	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000162333	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
Tetraodontidae	ANCESTRAL SPECIES	7	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000162333	ENSGT01100000263533.b.a.a.a	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Fugu	MODERN SPECIES	16	cdh11 (ENSTRUG00000008151)	chrna1 (ENSTRUG00000008738)	ENSTRUG00000009272	ENSTRUG00000032802	ENSTRUG00000030881	hoxd4b (ENSTRUG00000028105)	mtx2 (ENSTRUG00000009663)	cdh5 (ENSTRUG00000009855)	ENSTRUG00000009938	tmem41ab (ENSTRUG00000009946)	GPR155 (ENSTRUG00000010023)	waspipb (ENSTRUG00000010261)	ciao2b (ENSTRUG00000010273)	ENSTRUG00000010354	ENSTRUG00000030779 #18	b3gnt2b (ENSTRUG00000010977) #22	EHBP1 (ENSTRUG00000011025) #24	otx1 (ENSTRUG00000011049) #25	WDPCP (ENSTRUG00000011105) #26	MDH1 (ENSTRUG00000025836) #27	ugp2b (ENSTRUG00000020420) #30	peli1b (ENSTRUG00000011542) ##32	ENSTRUG00000019803	lgalslb (ENSTRUG00000011696) #33	ENSTRUG00000021877	ENSTRUG00000011707	actr2a (ENSTRUG00000011717)	SPRED2 (ENSTRUG00000011904)	meis1b (ENSTRUG00000011993)	ENSTRUG00000022857	c1d (ENSTRUG00000012245)
Tetraodon	MODERN SPECIES	9	supt3h (ENSTNIG00000009854)	cdc5l (ENSTNIG00000009853)	napba (ENSTNIG00000001455)	ENSTNIG00000009852	crls1 (ENSTNIG00000009851)	MCM8 (ENSTNIG00000009850)	cdh11 (ENSTNIG00000009849)	chrna1 (ENSTNIG00000009848)	ENSTNIG00000001782	ENSTNIG00000001779	ENSTNIG00000001778	mtx2 (ENSTNIG00000009847)	ENSTNIG00000009846	ENSTNIG00000009845	ciao2b (ENSTNIG00000009844)	b3gnt2b (ENSTNIG00000009843) #22	ENSTNIG00000009842 #24	EHBP1 (ENSTNIG00000009841) #24	otx1 (ENSTNIG00000009840) #25	WDPCP (ENSTNIG00000009839) #26	MDH1 (ENSTNIG00000009838) #27	ugp2b (ENSTNIG00000009835) #30	peli1b (ENSTNIG00000009836) ##32	ugp2b (ENSTNIG00000009837) #30	peli1b (ENSTNIG00000009834) ##32	ENSTNIG00000009833	lgalslb (ENSTNIG00000009832) #33	ENSTNIG00000009831	actr2a (ENSTNIG00000009830)	SPRED2 (ENSTNIG00000009829)	meis1b (ENSTNIG00000009828)
Eupecaria_A	ANCESTRAL SPECIES	1	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000167313	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000162333	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
Ballan wrasse	MODERN SPECIES	341							cdh5 (ENSLBEG00000006406)	ENSLBEG00000006385	tmem41ab (ENSLBEG00000006364)	GPR155 (ENSLBEG00000006296)	ENSLBEG00000006252	ENSLBEG00000006224	ciao2b (ENSLBEG00000006191)	ENSLBEG00000006157	ENSLBEG00000006139	b3gnt2b (ENSLBEG00000006120) #22	EHBP1 (ENSLBEG00000006024) #24	otx1 (ENSLBEG00000005993) #25	ENSLBEG00000005960 #26
Eupecaria_B	ANCESTRAL SPECIES	3	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000162333	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
Perciformes	ANCESTRAL SPECIES	17	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01030000235205	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a.h	ENSGT00940000156327.l
Perciformes_a	ANCESTRAL SPECIES	16	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01030000235205	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a.h	ENSGT00940000156327.l
Channel bull blenny	MODERN SPECIES	6	cdh11 (ENSCGOG00000018741)	chrna1 (ENSCGOG00000018588)	ENSCGOG00000018586	ENSCGOG00000018584	ENSCGOG00000018583	mtx2 (ENSCGOG00000018582)	cdh5 (ENSCGOG00000018579)	ENSCGOG00000018578	tmem41ab (ENSCGOG00000018577)	GPR155 (ENSCGOG00000018145)	ENSCGOG00000018133	ciao2b (ENSCGOG00000018127)	ENSCGOG00000018126	ENSCGOG00000018075	ENSCGOG00000018070 #18	b3gnt2b (ENSCGOG00000018067) #22	EHBP1 (ENSCGOG00000018066) #24	otx1 (ENSCGOG00000018063) #25	WDPCP (ENSCGOG00000018045) #26	MDH1 (ENSCGOG00000017586) #27	ENSCGOG00000017565	peli1b (ENSCGOG00000017558) ##32	ENSCGOG00000017525	lgalslb (ENSCGOG00000017523) #33	ENSCGOG00000017519	ENSCGOG00000017517	ENSCGOG00000017515	ENSCGOG00000017511 #34	ACTR2 (ENSCGOG00000017247)	SPRED2 (ENSCGOG00000017236)	meis1b (ENSCGOG00000014989)
Pike perch	MODERN SPECIES	30	cdh11 (ENSSLUG00000015183)	ENSSLUG00000016421	chrna1 (ENSSLUG00000016431)	ENSSLUG00000016476	ENSSLUG00000016498	mtx2 (ENSSLUG00000016529)	cdh5 (ENSSLUG00000016548)	ENSSLUG00000016553	tmem41ab (ENSSLUG00000016558)	GPR155 (ENSSLUG00000016573)	ENSSLUG00000016614	ENSSLUG00000016618	ENSSLUG00000016623	ciao2b (ENSSLUG00000016626)	ENSSLUG00000016721	b3gnt2b (ENSSLUG00000018228) #22	EHBP1 (ENSSLUG00000018256) #24	otx1 (ENSSLUG00000018349) #25	WDPCP (ENSSLUG00000018353) #26	mdh1aa (ENSSLUG00000018360) #27	ugp2b (ENSSLUG00000005472) #30	peli1b (ENSSLUG00000007153) ##32	ENSSLUG00000007184	lgalslb (ENSSLUG00000007241) #33	ENSSLUG00000007259	ENSSLUG00000007265	ENSSLUG00000007269	ENSSLUG00000007277	ENSSLUG00000007287 #34	ACTR2 (ENSSLUG00000007306)	SPRED2 (ENSSLUG00000007558)
Cottioidei	ANCESTRAL SPECIES	17	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000177342.a	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01030000234576.D.a.a.b.a.a.a.a.b	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a.h	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405	ENSGT00950000183091.A.b
Lumpfish	MODERN SPECIES	6	ENSCLMG00005009736	ENSCLMG00005009733	ENSCLMG00005009732	ENSCLMG00005009724	mtx2 (ENSCLMG00005009708)	ENSCLMG00005009705	ENSCLMG00005009703	ENSCLMG00005009701	ENSCLMG00005009697	TMEM41A (ENSCLMG00005009692)	ENSCLMG00005009659	WIPF1 (ENSCLMG00005009655)	ciao2b (ENSCLMG00005009654)	ENSCLMG00005009652	ENSCLMG00005009648	b3gnt2b (ENSCLMG00005009647) #22	ENSCLMG00005009645	EHBP1 (ENSCLMG00005009639) #24	otx1 (ENSCLMG00005009635) #25	ENSCLMG00005009634 #26	MDH1 (ENSCLMG00005009623) #27	ugp2b (ENSCLMG00005009607) #30	ENSCLMG00005009603	peli1b (ENSCLMG00005009602) ##32	ENSCLMG00005009551	lgalslb (ENSCLMG00005009545) #33	ENSCLMG00005009542	ENSCLMG00005009540	ACTR2 (ENSCLMG00005009470)	SPRED2 (ENSCLMG00005009468)	ENSCLMG00005009467
Stickleback	MODERN SPECIES	6	crls1 (ENSGACG00000011832)	MCM8 (ENSGACG00000011835)	cdh11 (ENSGACG00000011843)	chrna1 (ENSGACG00000011894)	ENSGACG00000011901	ENSGACG00000011902	ENSGACG00000011907	mtx2 (ENSGACG00000011909)	ENSGACG00000011926	ENSGACG00000011928	tmem41ab (ENSGACG00000011933)	GPR155 (ENSGACG00000011939)	ENSGACG00000011946	ciao2b (ENSGACG00000011953)	ENSGACG00000011956	b3gnt2b (ENSGACG00000011971) #22	ENSGACG00000011978 #24	c1d (ENSGACG00000011981)	dnaaf10 (ENSGACG00000011988)	pno1 (ENSGACG00000012047)	cnrip1b (ENSGACG00000012052)	ENSGACG00000012068	ddx43 (ENSGACG00000012072)	slc17a5 (ENSGACG00000012086)	ENSGACG00000012095	ENSGACG00000012101	ENSGACG00000012105	MAP4K3 (ENSGACG00000012107)	ENSGACG00000012126	ENSGACG00000012134	ENSGACG00000012132
Eupecaria_C	ANCESTRAL SPECIES	1	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01030000234576.D.a.a.b.a.a.a.a.b	ENSGT00940000177700	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Gilthead seabream	MODERN SPECIES	6	cdh11 (ENSSAUG00010005288)	chrna1 (ENSSAUG00010004697)	ENSSAUG00010004675	ENSSAUG00010004672	ENSSAUG00010004671	ENSSAUG00010004599	mtx2 (ENSSAUG00010004520)	cdh5 (ENSSAUG00010004511)	ENSSAUG00010004509	tmem41ab (ENSSAUG00010004502)	GPR155 (ENSSAUG00010004440)	ENSSAUG00010004429	ciao2b (ENSSAUG00010004424)	ENSSAUG00010003745	ENSSAUG00010003703 #18	b3gnt2b (ENSSAUG00010003701) #22	EHBP1 (ENSSAUG00010003566) #24	otx1 (ENSSAUG00010003536) #25	WDPCP (ENSSAUG00010003517) #26	mdh1aa (ENSSAUG00010003388) #27	ugp2b (ENSSAUG00010001888) #30	peli1b (ENSSAUG00010001780) ##32	ENSSAUG00010001623	lgalslb (ENSSAUG00010001580) #33	ENSSAUG00010001562	ENSSAUG00010001554	ENSSAUG00010019559	ENSSAUG00010019557	ENSSAUG00010019554 #34	ACTR2 (ENSSAUG00010019253)	SPRED2 (ENSSAUG00010019238)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	1	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01030000234576.D.a.a.b.a.a.a.a.b	ENSGT00940000177700	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
European seabass	MODERN SPECIES	1	ENSDLAG00005015943	ENSDLAG00005015790	ENSDLAG00005015732	ENSDLAG00005033867	ENSDLAG00005015721	ENSDLAG00005015719	ENSDLAG00005015686	ENSDLAG00005015679	ENSDLAG00005015657	ENSDLAG00005029414	ENSDLAG00005015378	ENSDLAG00005015360	ENSDLAG00005015339	ENSDLAG00005014200	ENSDLAG00005028610 #18	b3gnt2b (ENSDLAG00005028854) #22	EHBP1 (ENSDLAG00005014039) #24	otx1 (ENSDLAG00005033458) #25	WDPCP (ENSDLAG00005013917) #26	MDH1 (ENSDLAG00005027998) #27	ugp2b (ENSDLAG00005012869) #30	peli1b (ENSDLAG00005012804) ##32	ENSDLAG00005012591	LGALSL (ENSDLAG00005027623) #33	ENSDLAG00005012530	ENSDLAG00005012508	ACTR2 (ENSDLAG00005012437)	SPRED2 (ENSDLAG00005034776)	MEIS1 (ENSDLAG00005011711)	ENSDLAG00005011679	C1D (ENSDLAG00005034609)
Large yellow croaker	MODERN SPECIES	482	ift172 (ENSLCRG00005020988)	cad (ENSLCRG00005020981)	dnajc5ga (ENSLCRG00005020976)	trim54 (ENSLCRG00005020962)	uts1 (ENSLCRG00005020961)	mpv17 (ENSLCRG00005020960)	ENSLCRG00005020379	slc30a2 (ENSLCRG00005020373)	ENSLCRG00005020372	ENSLCRG00005020370	ENSLCRG00005020369	ENSLCRG00005020368	clvs2 (ENSLCRG00005020367)	smpdl3a (ENSLCRG00005020366)	fabp7b (ENSLCRG00005020365)	b3gnt2b (ENSLCRG00005020364) #22	EHBP1 (ENSLCRG00005020360) #24	otx1 (ENSLCRG00005020355) #25	WDPCP (ENSLCRG00005020354) #26	MDH1 (ENSLCRG00005020343) #27	ugp2b (ENSLCRG00005019939) #30	PRKCE (ENSLCRG00005019351)	epas1b (ENSLCRG00005019258)
Percomorphaceae_D	ANCESTRAL SPECIES	19	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c
Anabantaria	ANCESTRAL SPECIES	17	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Anabantoidei	ANCESTRAL SPECIES	17	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Climbing perch	MODERN SPECIES	6	ENSATEG00000016680	ENSATEG00000016631	ENSATEG00000016541	ENSATEG00000016503	ENSATEG00000016475	ENSATEG00000016381	ENSATEG00000016357	ENSATEG00000016342	ENSATEG00000030045	ENSATEG00000016253	ENSATEG00000016233	ENSATEG00000016223	ENSATEG00000016209	ENSATEG00000013894	ENSATEG00000013581	b3gnt2b (ENSATEG00000013573) #22	EHBP1 (ENSATEG00000013475) #24	otx1 (ENSATEG00000013437) #25	WDPCP (ENSATEG00000013390) #26	MDH1 (ENSATEG00000013346) #27	ugp2b (ENSATEG00000013298) #30	peli1b (ENSATEG00000013249) ##32	ENSATEG00000013162	LGALSL (ENSATEG00000027905) #33	ENSATEG00000013084	ENSATEG00000028886 #34	ACTR2 (ENSATEG00000013034)	SPRED2 (ENSATEG00000013004)	MEIS1 (ENSATEG00000012952)	ENSATEG00000012939	C1D (ENSATEG00000012922)
Siamese fighting fish	MODERN SPECIES	6	ENSBSLG00000020568	cdh11 (ENSBSLG00000020039)	chrna1 (ENSBSLG00000019926)	ENSBSLG00000019858	ENSBSLG00000019845	ENSBSLG00000019832	mtx2 (ENSBSLG00000019798)	cdh5 (ENSBSLG00000019764)	ENSBSLG00000019737	tmem41ab (ENSBSLG00000019735)	GPR155 (ENSBSLG00000019629)	ENSBSLG00000019611	ciao2b (ENSBSLG00000019605)	ENSBSLG00000019449	ENSBSLG00000019316 #18	b3gnt2b (ENSBSLG00000019315) #22	EHBP1 (ENSBSLG00000019193) #24	otx1 (ENSBSLG00000019164) #25	WDPCP (ENSBSLG00000019147) #26	MDH1 (ENSBSLG00000019042) #27	ugp2b (ENSBSLG00000018667) #30	peli1b (ENSBSLG00000018653) ##32	ENSBSLG00000018627	lgalslb (ENSBSLG00000018607) #33	ENSBSLG00000018593 #34	actr2a (ENSBSLG00000018376)	SPRED2 (ENSBSLG00000018342)	meis1b (ENSBSLG00000017627)	ENSBSLG00000017560	c1d (ENSBSLG00000017549)	dnaaf10 (ENSBSLG00000017449)
Zig-zag eel	MODERN SPECIES	6	ENSMAMG00000022384	ENSMAMG00000022383	ENSMAMG00000022381	ENSMAMG00000022380	ENSMAMG00000027018	ENSMAMG00000022378	ENSMAMG00000022377	ENSMAMG00000022376	ENSMAMG00000022375	ENSMAMG00000022373	ENSMAMG00000022372	ENSMAMG00000025775	ENSMAMG00000022370	ENSMAMG00000025255	ENSMAMG00000022263	b3gnt2b (ENSMAMG00000022230) #22	EHBP1 (ENSMAMG00000022226) #24	otx1 (ENSMAMG00000022224) #25	WDPCP (ENSMAMG00000022221) #26	MDH1 (ENSMAMG00000022218) #27	ugp2b (ENSMAMG00000022214) #30	peli1b (ENSMAMG00000022208) ##32	ENSMAMG00000022200	LGALSL (ENSMAMG00000022198) #33	AFTPH (ENSMAMG00000022192) #34	actr2b (ENSMAMG00000022188)	SPRED2 (ENSMAMG00000025530)	MEIS1 (ENSMAMG00000022171)	ENSMAMG00000022164	C1D (ENSMAMG00000022156)	pno1 (ENSMAMG00000022144)
Carangaria	ANCESTRAL SPECIES	19	ENSGT01090000260080.a	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00910000144296	ENSGT00390000017697.b	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT00940000166594	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
Pleuronectoidei	ANCESTRAL SPECIES	60															ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000166594	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c	ENSGT00390000015405
Tongue sole	MODERN SPECIES	3	ENSCSEG00000016661	pcca (ENSCSEG00000016645)	ENSCSEG00000016638	ENSCSEG00000016632	vps8 (ENSCSEG00000016603)	ENSCSEG00000016598	exo1 (ENSCSEG00000016595)	ENSCSEG00000016585	yipf4 (ENSCSEG00000016580)	ENSCSEG00000016564	ENSCSEG00000016553	ttc27 (ENSCSEG00000016529)	LTBP1 (ENSCSEG00000016487)	rasgrp3 (ENSCSEG00000016464)	ENSCSEG00000016455	b3gnt2b (ENSCSEG00000016454) #22	OTOR (ENSCSEG00000016439)	pcsk2 (ENSCSEG00000016435)	BFSP1 (ENSCSEG00000016385)	prokr1b (ENSCSEG00000016378)	plek (ENSCSEG00000016369)	pcdh15a (ENSCSEG00000016353)	ENSCSEG00000016346	dkk1a (ENSCSEG00000016340)	prkg1a (ENSCSEG00000016315)	sgms1a (ENSCSEG00000016282)	ENSCSEG00000016274	minpp1a (ENSCSEG00000016261)	papss2a (ENSCSEG00000016226)	ENSCSEG00000016194	ENSCSEG00000016134
Turbot	MODERN SPECIES	6	ENTPD6 (ENSSMAG00000007560)	ENSSMAG00000007617	abhd12 (ENSSMAG00000007585)	gins1 (ENSSMAG00000007654)	ENSSMAG00000007690	ENSSMAG00000007740	ENSSMAG00000023273	ENSSMAG00000028253	ENSSMAG00000007765	ENSSMAG00000007832	ENSSMAG00000022976	ENSSMAG00000033224	ENSSMAG00000008104	ENSSMAG00000008173	ENSSMAG00000032801 #18	b3gnt2b (ENSSMAG00000006538) #22	EHBP1 (ENSSMAG00000006498) #24	otx1 (ENSSMAG00000034338) #25	WDPCP (ENSSMAG00000006459) #26	LGALSL (ENSSMAG00000026617) #33	ENSSMAG00000006366	ENSSMAG00000006334 ##32	ENSSMAG00000006305 #30	MDH1 (ENSSMAG00000006275) #27	ENSSMAG00000006235	ENSSMAG00000026344	ENSSMAG00000006181	si:ch1073-126c3.2 (ENSSMAG00000006174)	ENSSMAG00000006166	ENSSMAG00000006131	ENSSMAG00000006082
Carangaria_A	ANCESTRAL SPECIES	25														ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01030000235205	ENSGT00940000166594	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l	ENSGT00390000009597.c
Seriola	ANCESTRAL SPECIES	17	ENSGT00940000153691.a.a	ENSGT00940000156851.d	ENSGT00390000001859.f	ENSGT00940000161503.b	ENSGT00940000158988.a.b	ENSGT00950000182919.C	ENSGT00940000165928	ENSGT00940000165226	ENSGT00940000162528	ENSGT00390000004153.d	ENSGT00940000160228.i.a.a	ENSGT00940000157824.i.b #18	ENSGT00910000144296	ENSGT00940000167313	ENSGT00390000017697.b	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT01100000263533.b.a.a.a	ENSGT01100000263491.a.a.c.b	ENSGT00940000177700	ENSGT00940000154186.a.q #34	ENSGT00940000154556.a.b	ENSGT00940000156841.a.a	ENSGT00940000156327.l
Yellowtail amberjack	MODERN SPECIES	3094									TMEM41A (ENSSLDG00000006648)	GPR155 (ENSSLDG00000006689)	ENSSLDG00000006929	ENSSLDG00000007951 #18	ENSSLDG00000007968	ENSSLDG00000007980	ciao2b (ENSSLDG00000007996)	b3gnt2b (ENSSLDG00000008017) #22	EHBP1 (ENSSLDG00000008033) #24	otx1 (ENSSLDG00000008065) #25
Greater amberjack	MODERN SPECIES	72	MCM8 (ENSSDUG00000020994)	cdh11 (ENSSDUG00000020964)	chrna1 (ENSSDUG00000020948)	ENSSDUG00000020905	ENSSDUG00000020888	ENSSDUG00000020885	ENSSDUG00000020876	mtx2 (ENSSDUG00000020855)	cdh5 (ENSSDUG00000020824)	ENSSDUG00000020807	TMEM41A (ENSSDUG00000020800)	GPR155 (ENSSDUG00000020739)	ENSSDUG00000020702	ENSSDUG00000020688	ciao2b (ENSSDUG00000020677)	b3gnt2b (ENSSDUG00000020673) #22	EHBP1 (ENSSDUG00000020579) #24	otx1 (ENSSDUG00000020542) #25	WDPCP (ENSSDUG00000020512) #26	mdh1aa (ENSSDUG00000020483) #27	ENSSDUG00000020458	ugp2b (ENSSDUG00000020436) #30	ENSSDUG00000020421 ##32	ENSSDUG00000020392	lgalslb (ENSSDUG00000020375) #33	ENSSDUG00000020372	ENSSDUG00000020365	ENSSDUG00000020354	ENSSDUG00000020338 #34	ACTR2 (ENSSDUG00000020311)	SPRED2 (ENSSDUG00000020295)
Barramundi perch	MODERN SPECIES	33														ENSLCAG00010013366	ENSLCAG00010013374 #18	b3gnt2b (ENSLCAG00010013377) #22	EHBP1 (ENSLCAG00010013383) #24	otx1 (ENSLCAG00010013390) #25	WDPCP (ENSLCAG00010013399) #26	mdh1aa (ENSLCAG00010013412) #27	ugp2b (ENSLCAG00010013444) #30	peli1b (ENSLCAG00010013496) ##32	ENSLCAG00010013511	lgalslb (ENSLCAG00010013522) #33	ENSLCAG00010013527	ENSLCAG00010013530	ENSLCAG00010013537 #34	ACTR2 (ENSLCAG00010013559)	SPRED2 (ENSLCAG00010013603)	meis1b (ENSLCAG00010013649)	ENSLCAG00010014062
Protacanthopterygii	ANCESTRAL SPECIES	4	ENSGT00940000156530.c.ab	ENSGT00390000018052	ENSGT00950000183091.A.b	ENSGT00390000015405	ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o	ENSGT00940000156841.a.a	ENSGT00940000154556.a.b	ENSGT00940000156467 #7	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.s.a.b #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000157597 #24	ENSGT00940000161234.c #25	ENSGT00390000016551 #26	ENSGT00530000063410.a.q.a #27	ENSGT00940000153464.B.z.b #30	ENSGT01100000263516.a.b.b.b.b.a.a.b.b.a.a.b	ENSGT00950000183050.b.b.b.a.a.a.a ##32	ENSGT00940000166587	ENSGT00940000155337.ab #33	ENSGT00940000177700	ENSGT01050000244843.d.f.b	ENSGT00940000157081 #37	ENSGT00940000155080	ENSGT00940000165329	ENSGT00950000183101.a.b.b.a.a
Salmoninae	ANCESTRAL SPECIES	617				ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o.b	ENSGT00940000156841.a.a	ENSGT00940000154556.a.b	ENSGT00940000156467 #7	ENSGT00940000163917.a.b.c.b	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22	ENSGT00940000153408.B.s.a.b #17	ENSGT00970000194185.C
Salmoninae_a	ANCESTRAL SPECIES	100	ENSGT01050000244940.a.b	ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o.b	ENSGT00940000156841.a.a	ENSGT00940000154556.b	ENSGT00940000154556.a.b.a	ENSGT00940000156467 #7	ENSGT00940000163917.a.b.c.b	ENSGT00390000000113.A.a.b	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.t #17	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22
Salmo	ANCESTRAL SPECIES	231									ENSGT00940000154556.a.b.a	ENSGT00940000156467 #7	ENSGT00940000163917.a.b.c.b	ENSGT00390000000113.A.a.b	ENSGT00940000158732 #8	ENSGT00390000016883 #11	ENSGT00390000008178.s #12	ENSGT00940000155345.q #22	ENSGT00390000008178.t #12	ENSGT00940000153408.B.s.a.b #17	ENSGT00970000194185.C
River trout	DUPLICATION
River trout	MODERN SPECIES	265																b3gnt2b (ENSSTUG00000022765) #22
River trout	MODERN SPECIES	35	ENSSTUG00000016803	ENSSTUG00000016819	ENSSTUG00000016828	ENSSTUG00000016831	ENSSTUG00000016839	SPRED2 (ENSSTUG00000016846)	ENSSTUG00000016864	papolg (ENSSTUG00000017319) #7	ENSSTUG00000021761	ENSSTUG00000021771	pex13 (ENSSTUG00000021880) #11	SANBR (ENSSTUG00000021904) #12	XPO1 (ENSSTUG00000022024) #17	ENSSTUG00000022278	ENSSTUG00000022286	b3gnt2b (ENSSTUG00000022297) #22	otx1 (ENSSTUG00000022321) #25	otx1 (ENSSTUG00000022333) #25	ENSSTUG00000017983 #26	ENSSTUG00000017988	MDH1 (ENSSTUG00000018007) #27	ugp2b (ENSSTUG00000018287) #30	ENSSTUG00000019710	peli1b (ENSSTUG00000019729) ##32	ENSSTUG00000019856	lgalslb (ENSSTUG00000020161) #33	ENSSTUG00000020168 #34	ENSSTUG00000020208	slc1a4 (ENSSTUG00000020308) #37	ENSSTUG00000020382	ENSSTUG00000020427
Atlantic salmon	MODERN SPECIES	1098	ENSSSAG00000111590	ENSSSAG00000015638	ENSSSAG00000094331	ENSSSAG00000072049	ENSSSAG00000072128 #7	ENSSSAG00000119631	ENSSSAG00000072037	REL (ENSSSAG00000102030) #8	SANBR (ENSSSAG00000117472) #12	ENSSSAG00000057312 #17	ENSSSAG00000020249 #17	ENSSSAG00000099028	ENSSSAG00000044004	ENSSSAG00000086437	ENSSSAG00000117895	ENSSSAG00000049572 #22
Oncorhynchus	ANCESTRAL SPECIES	126	ENSGT00390000009597.c	ENSGT00940000157509.a.f	ENSGT00940000156327.l.o.b	ENSGT00940000156841.a.a	ENSGT00940000154556.b.a	ENSGT00940000156467 #7	ENSGT00940000163917.a.b.c.b	ENSGT00390000000113.A.a.b	ENSGT00940000158732.n #8	ENSGT00390000016883.c #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.s.a.b #17	ENSGT00970000194185.C	ENSGT00940000165604	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES		ENSOMYG00000048884	ENSOMYG00000077490	ENSOMYG00000075413	ENSOMYG00000000126 #7	ENSOMYG00000069566	ENSOMYG00000044586	REL (ENSOMYG00000074570) #8	pex13 (ENSOMYG00000000604) #11	SANBR (ENSOMYG00000067508) #12	XPO1 (ENSOMYG00000062205) #17	ENSOMYG00000048298	ENSOMYG00000052214	ENSOMYG00000000177	ENSOMYG00000000233 #18	ENSOMYG00000000191	b3gnt2b (ENSOMYG00000053328) #22	ENSOMYG00000071947	ENSOMYG00000059374	ENSOMYG00000070464	ENSOMYG00000068195	ENSOMYG00000051099	ENSOMYG00000070137	ENSOMYG00000039580	ENSOMYG00000068065 #37	ENSOMYG00000000685	ENSOMYG00000051664	ENSOMYG00000000693	ENSOMYG00000055964	ENSOMYG00000000672	ENSOMYG00000062237	ENSOMYG00000058334
Rainbow trout	MODERN SPECIES	15	ENSOMYG00000048837	ENSOMYG00000069772	ebf3a (ENSOMYG00000050048)	ENSOMYG00000077783	ENSOMYG00000076967	ENSOMYG00000053535	ENSOMYG00000063787 #7	ENSOMYG00000072111	REL (ENSOMYG00000044569) #8	ENSOMYG00000031437	ENSOMYG00000062826 #12	ENSOMYG00000057812 #17	ENSOMYG00000050818	ENSOMYG00000055109	ENSOMYG00000062049	ENSOMYG00000056805 #22	ENSOMYG00000065124	ENSOMYG00000066187	ENSOMYG00000056812	ENSOMYG00000059380 #24	ENSOMYG00000048975	ENSOMYG00000046661	ENSOMYG00000029392	ENSOMYG00000077291	ENSOMYG00000056216	ENSOMYG00000037293	tfam (ENSOMYG00000055364)	zgc:171971 (ENSOMYG00000053768)	ENSOMYG00000022371	phyhiplb (ENSOMYG00000059140)	ENSOMYG00000054930
Oncorhynchus_a	ANCESTRAL SPECIES	269									ENSGT00940000158732.m #8	ENSGT00390000016883.c #11	ENSGT00390000008178 #12	ENSGT00940000153408.B.s.a.b #17	ENSGT00970000194185.C	ENSGT00940000165604	ENSGT00940000157824.i.b #18	ENSGT00940000155345.q #22
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	416																B3GNT2 (ENSOKIG00005047449) #22
Coho salmon	MODERN SPECIES	33	ENSOKIG00005043925	GHITM (ENSOKIG00005043909)	CHST3 (ENSOKIG00005043901)	SPRED2 (ENSOKIG00005043896)	ENSOKIG00005043475	papolg (ENSOKIG00005039901) #7	ENSOKIG00005039783	ENSOKIG00005039740	REL (ENSOKIG00005039724) #8	pex13 (ENSOKIG00005039709) #11	SANBR (ENSOKIG00005039657) #12	ENSOKIG00005039218 #17	ENSOKIG00005039174	ENSOKIG00005039168	ENSOKIG00005039155 #18	b3gnt2b (ENSOKIG00005039138) #22	ENSOKIG00005046392	otx1 (ENSOKIG00005046385) #25	ENSOKIG00005046266 #24	MDH1 (ENSOKIG00005045989) #27	UGP2 (ENSOKIG00005045840) #30	ENSOKIG00005045806	ENSOKIG00005045728 ##32	ENSOKIG00005045719	ENSOKIG00005045645	ENSOKIG00005045554	LGALSL (ENSOKIG00005045534) #33	ENSOKIG00005045528	ENSOKIG00005045522	ENSOKIG00005045511	SLC1A4 (ENSOKIG00005045486) #37
Chinook salmon	MODERN SPECIES	1236														ENSOTSG00005025300	tec (ENSOTSG00005025299)	b3gnt2b (ENSOTSG00005025298) #22
Huchen	MODERN SPECIES	3378														ENSHHUG00000025584 #18	ENSHHUG00000025586	b3gnt2b (ENSHHUG00000025589) #22
Northern pike	MODERN SPECIES	4	pno1 (ENSELUG00000014887)	C1D (ENSELUG00000014823)	ENSELUG00000014800	ENSELUG00000014766	ENSELUG00000014739	ENSELUG00000031773	SPRED2 (ENSELUG00000014634)	ACTR2 (ENSELUG00000014576)	papolg (ENSELUG00000014497) #7	ENSELUG00000014470	ENSELUG00000001419	rel (ENSELUG00000014377) #8	pex13 (ENSELUG00000014334) #11	SANBR (ENSELUG00000014318) #12	XPO1 (ENSELUG00000014306) #17	b3gnt2b (ENSELUG00000014198) #22	EHBP1 (ENSELUG00000014117) #24	WDPCP (ENSELUG00000013884) #26	otx1 (ENSELUG00000013906) #25	ENSELUG00000030195	MDH1 (ENSELUG00000013840) #27	ENSELUG00000032007	ugp2b (ENSELUG00000013792) #30	ENSELUG00000029570	ENSELUG00000013758	peli1b (ENSELUG00000013744) ##32	ENSELUG00000013717	lgalslb (ENSELUG00000013610) #33	ENSELUG00000034614	ENSELUG00000033665	ENSELUG00000034060
Clupeocephala	ANCESTRAL SPECIES	37	ENSGT00940000158966	ENSGT00980000199991	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.j #18	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000155078.a.b.a.a	ENSGT00940000157081 #37	ENSGT00810000125473.A	ENSGT00940000155078.a.b.a.b	ENSGT00390000001858 #35	ENSGT00940000154186.a.r #34
Euteleosteomorpha	ANCESTRAL SPECIES	18	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00980000199991	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00390000001858 #35	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000155078.a.b.a.b	ENSGT00940000154958	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Protacanthopterygii	ANCESTRAL SPECIES	116				ENSGT00970000195479.A	ENSGT00940000166495	ENSGT00950000183955	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000155078.a.b.a.b	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b	ENSGT00940000156327.l.p	ENSGT00390000009597.d
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	377	ENSGT00940000153510.a.a	ENSGT00940000163128.a	ENSGT00940000175870	ENSGT00390000009760.i	ENSGT00940000154830.d.a	ENSGT00390000002361.i	ENSGT01050000244891.E.a.a.c	ENSGT00940000166495.c	ENSGT00390000007529.d #10	ENSGT00550000074956.f #19	ENSGT00940000178862.a.a	ENSGT00940000157824.i.a.eb.a #18	ENSGT00940000153408.B.s.b.m #17	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #20	ENSGT00940000155345.r.a #22	ENSGT01100000263601.a
Salmoninae_a	ANCESTRAL SPECIES	67	ENSGT00940000175870	ENSGT00390000009760.i	ENSGT00940000154830.d.a	ENSGT00390000002361.i	ENSGT01050000244891.E.a.a.c	ENSGT00970000195479.A.b	ENSGT00940000166495.c	ENSGT00390000007529.d #10	ENSGT00550000074956.f #19	ENSGT00940000178862.a.a	ENSGT00940000157824.i.a.eb.a #18	ENSGT00940000153408.B.s.b.m #17	ENSGT00940000158659.d #16	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #20	ENSGT00940000155345.r.a #22	ENSGT01100000263601.a	ENSGT00940000161234.d.b #25	ENSGT00530000063410.a.q.b.d #27	ENSGT00940000153464.B.z.a.g #30	ENSGT00390000000583.b #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##32	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r.e #34	ENSGT00530000063867.b.c #36	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b	ENSGT00940000156841.a.b.f	ENSGT00940000156327.l.p.b	ENSGT00390000009597.d.f
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000175870	ENSGT00390000009760.i	ENSGT00940000154830.d.a	ENSGT00390000002361.i	ENSGT01050000244891.E.a.a.c	ENSGT00970000195479.A.b	ENSGT00940000166495.c	ENSGT00390000007529.d #10	ENSGT00550000074956.f #19	ENSGT00940000157824.i.a.db.a.a #18	ENSGT00940000157824.i.a.eb.a #18	ENSGT00940000153408.B.s.b.m #17	ENSGT00940000158659.d #16	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #20	ENSGT00940000155345.r.a #22	ENSGT01100000263601.a	ENSGT00940000161234.d.b.a #25	ENSGT00530000063410.a.q.b.d #27	ENSGT00940000153464.B.z.a.g #30	ENSGT00390000000583.b #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##32	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r.e #34	ENSGT00530000063867.b.c #36	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b	ENSGT00940000156841.a.b.f	ENSGT00940000156327.l.p.b	ENSGT00390000009597.d.f
Oncorhynchus_a	ANCESTRAL SPECIES	3	ENSGT00940000175870	ENSGT00390000009760.i	ENSGT00940000154830.d.a	ENSGT00390000002361.i	ENSGT01050000244891.E.a.a.c	ENSGT00970000195479.A.b	ENSGT00940000166495.c	ENSGT00390000007529.d #10	ENSGT00550000074956.f #19	ENSGT00940000157824.i.a.db.a.a #18	ENSGT00940000157824.i.a.eb.a #18	ENSGT00940000153408.B.s.b.m #17	ENSGT00940000158659.d #16	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #20	ENSGT00940000155345.r.a #22	ENSGT01100000263601.a	ENSGT00940000161234.d.b.a #25	ENSGT00530000063410.a.q.b.d #27	ENSGT00940000153464.B.z.a.g #30	ENSGT00390000000583.b #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##32	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r.e #34	ENSGT00530000063867.b.c #36	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b	ENSGT00940000156841.a.b.f	ENSGT00940000156327.l.p.b	ENSGT00390000009597.d.f
Chinook salmon	MODERN SPECIES	11	BPTF (ENSOTSG00005007330)	C17orf58 (ENSOTSG00005007339)	ENSOTSG00005007340	ENSOTSG00005007357	ENSOTSG00005007364	pus10 (ENSOTSG00005008986) #10	cct4 (ENSOTSG00005008990) #19	ENSOTSG00005009004 #18	ENSOTSG00005009005 #18	XPO1 (ENSOTSG00005009013) #17	USP34 (ENSOTSG00005009050) #16	ENSOTSG00005009228	ENSOTSG00005009229	ENSOTSG00005009230	commd1 (ENSOTSG00005009231) #20	b3gnt2a (ENSOTSG00005009232) #22	ENSOTSG00005009233	OTX1 (ENSOTSG00005009235) #25	mdh1aa (ENSOTSG00005009236) #27	ugp2a (ENSOTSG00005009238) #30	vps54 (ENSOTSG00005009904) #31	ENSOTSG00005010658 ##32	lgalsla (ENSOTSG00005010659) #33	aftpha (ENSOTSG00005010660) #34	sertad2b (ENSOTSG00005010663) #36	rab1ab (ENSOTSG00005010665)	ACTR2 (ENSOTSG00005010672)	SPRED2 (ENSOTSG00005010765)	meis1b (ENSOTSG00005010767)	etaa1a (ENSOTSG00005010768)	PPP3R1 (ENSOTSG00005010770)
Coho salmon	MODERN SPECIES		ENSOKIG00005047084	ENSOKIG00005047082	NOL11 (ENSOKIG00005047077)	BPTF (ENSOKIG00005046264)	C17orf58 (ENSOKIG00005046134)	ENSOKIG00005046096	ENSOKIG00005046072	ENSOKIG00005045928	pus10 (ENSOKIG00005045896) #10	cct4 (ENSOKIG00005045653) #19	FAM161A (ENSOKIG00005045635) #18	ENSOKIG00005045490 #17	USP34 (ENSOKIG00005044727) #16	ENSOKIG00005044680	commd1 (ENSOKIG00005044673) #20	b3gnt2a (ENSOKIG00005044669) #22	ENSOKIG00005044662	OTX1 (ENSOKIG00005044655) #25	mdh1aa (ENSOKIG00005044577) #27	ugp2a (ENSOKIG00005043894) #30	vps54 (ENSOKIG00005042711) #31	ENSOKIG00005042591 ##32	lgalsla (ENSOKIG00005042539) #33	ENSOKIG00005042517	aftpha (ENSOKIG00005042497) #34	SERTAD2 (ENSOKIG00005042488) #36	ENSOKIG00005042429	ACTR2 (ENSOKIG00005042275)	SPRED2 (ENSOKIG00005042251)	MEIS1 (ENSOKIG00005041796)	etaa1a (ENSOKIG00005041770)
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000016471	NOL11 (ENSOMYG00000016508)	BPTF (ENSOMYG00000016658)	C17orf58 (ENSOMYG00000018356)	ENSOMYG00000018365	ENSOMYG00000064434	ENSOMYG00000018387	ENSOMYG00000018437	pus10 (ENSOMYG00000018682) #10	cct4 (ENSOMYG00000018803) #19	ENSOMYG00000074120 #18	ENSOMYG00000018929 #18	XPO1 (ENSOMYG00000018989) #17	USP34 (ENSOMYG00000019272) #16	commd1 (ENSOMYG00000019628) #20	b3gnt2a (ENSOMYG00000019635) #22	ENSOMYG00000019642	OTX1 (ENSOMYG00000019650) #25	MDH1 (ENSOMYG00000019660) #27	UGP2 (ENSOMYG00000019790) #30	vps54 (ENSOMYG00000020947) #31	ENSOMYG00000021247 ##32	ENSOMYG00000052056	lgalsla (ENSOMYG00000021281) #33	ENSOMYG00000070037 #34	SERTAD2 (ENSOMYG00000021333) #36	ENSOMYG00000021355	ACTR2 (ENSOMYG00000021385)	SPRED2 (ENSOMYG00000048611)	ENSOMYG00000068147	MEIS1 (ENSOMYG00000021484)
Salmo	ANCESTRAL SPECIES	56	ENSGT00940000175870	ENSGT00390000009760.i	ENSGT00940000154830.d.a	ENSGT00390000002361.i	ENSGT01050000244891.E.a.a.c	ENSGT00970000195479.A.b	ENSGT00940000166495.c	ENSGT00390000007529.d #10	ENSGT00550000074956.f #19	ENSGT00940000178862.a.a	ENSGT00940000157824.i.a.eb.a #18	ENSGT00940000153408.B.s.b.m #17	ENSGT00940000158659.d #16	ENSGT00730000111690.B.f.b.a.a.f	ENSGT00390000012029.ib #20	ENSGT00940000155345.r.a #22	ENSGT01100000263601.a	ENSGT00940000161234.d.b #25	ENSGT00530000063410.a.q.b.d #27	ENSGT00940000153464.B.z.a.g #30	ENSGT00390000000583.b #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.a ##32	ENSGT00940000155337.`b #33	ENSGT00940000154186.a.r.e #34	ENSGT00530000063867.b.c #36	ENSGT00940000155078.a.b.a.b.h.a	ENSGT00940000154556.a.a.b	ENSGT00940000156841.a.b.f	ENSGT00940000156327.l.p.b	ENSGT00390000009597.d.f.b	ENSGT00940000156530.c.`b.b.g.b
River trout	MODERN SPECIES	5	ENSSTUG00000031225	ENSSTUG00000031223	nol11 (ENSSTUG00000031171)	BPTF (ENSSTUG00000031038)	C17orf58 (ENSSTUG00000031031)	ENSSTUG00000031001	ENSSTUG00000030992	ENSSTUG00000030782	pus10 (ENSSTUG00000030653) #10	cct4 (ENSSTUG00000030507) #19	ENSSTUG00000030498	ENSSTUG00000030496 #18	XPO1 (ENSSTUG00000030289) #17	ENSSTUG00000030085	commd1 (ENSSTUG00000030068) #20	b3gnt2a (ENSSTUG00000030059) #22	ENSSTUG00000030046	OTX1 (ENSSTUG00000030039) #25	mdh1aa (ENSSTUG00000029738) #27	ugp2a (ENSSTUG00000029583) #30	vps54 (ENSSTUG00000028493) #31	ENSSTUG00000028433 ##32	lgalsla (ENSSTUG00000028414) #33	aftpha (ENSSTUG00000028372) #34	sertad2b (ENSSTUG00000028367) #36	rab1ab (ENSSTUG00000028280)	ACTR2 (ENSSTUG00000028049)	SPRED2 (ENSSTUG00000035506)	meis1b (ENSSTUG00000034640)	etaa1a (ENSSTUG00000034507)	PPP3R1 (ENSSTUG00000034407)
Atlantic salmon	MODERN SPECIES	3	nol11 (ENSSSAG00000064522)	ENSSSAG00000072060	BPTF (ENSSSAG00000064596)	C17orf58 (ENSSSAG00000065363)	ENSSSAG00000089948	ENSSSAG00000065419	ENSSSAG00000065440	pus10 (ENSSSAG00000067264) #10	cct4 (ENSSSAG00000067334) #19	FAM161A (ENSSSAG00000067389) #18	XPO1 (ENSSSAG00000067396) #17	USP34 (ENSSSAG00000067530) #16	ENSSSAG00000105301	ENSSSAG00000067653	commd1 (ENSSSAG00000067660) #20	b3gnt2a (ENSSSAG00000089430) #22	ENSSSAG00000067665	OTX1 (ENSSSAG00000084328) #25	MDH1 (ENSSSAG00000067693) #27	ugpa (ENSSSAG00000067874) #30	vps54 (ENSSSAG00000067962) #31	ENSSSAG00000114332 ##32	aftpha (ENSSSAG00000068076) #34	SERTAD2 (ENSSSAG00000111855) #36	ENSSSAG00000068085	ARP2A (ENSSSAG00000068208)	ENSSSAG00000102278	ENSSSAG00000087132	SPRED2 (ENSSSAG00000092399)	MEIS1 (ENSSSAG00000068225)	etaa1a (ENSSSAG00000068884)
Huchen	MODERN SPECIES	1256	nol11 (ENSHHUG00000026234)	BPTF (ENSHHUG00000025454)	ENSHHUG00000025443	ENSHHUG00000025373	ENSHHUG00000025270	pus10 (ENSHHUG00000025250) #10	cct4 (ENSHHUG00000025152) #19	ENSHHUG00000025144	ENSHHUG00000025137 #18	XPO1 (ENSHHUG00000025084) #17	ENSHHUG00000025077	ENSHHUG00000025067	ENSHHUG00000025001	ENSHHUG00000024948	commd1 (ENSHHUG00000024944) #20	b3gnt2a (ENSHHUG00000024942) #22	ENSHHUG00000024917
Salmoninae	ANCESTRAL SPECIES	187	ENSGT00390000009760.j	ENSGT00940000154830.d.b	ENSGT00390000002361.j	ENSGT01050000244891.E.a.a.d	ENSGT00970000195479.A	ENSGT00940000166495.d	ENSGT00390000007529.c #10	ENSGT00550000074956.e #19	ENSGT00940000157824.i.a.db #18	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #18	ENSGT00940000153408.B.s.b.n #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029.hb #20	ENSGT00940000155345.r.b #22	ENSGT01100000263601.b	ENSGT00940000167432	ENSGT00530000063410.a.q.b.c #27	ENSGT00940000153464.B.z.a.h #30	ENSGT00390000000583.a #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##32	ENSGT00940000154186.a.r.f #34	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b.e	ENSGT00940000156327.l.p.a
Huchen	MODERN SPECIES	240													ENSHHUG00000043635	ENSHHUG00000043623	commd1 (ENSHHUG00000043622) #20	B3GNT2 (ENSHHUG00000043619) #22	ENSHHUG00000043615	otx2a (ENSHHUG00000043609)	mdh1aa (ENSHHUG00000043462) #27	ENSHHUG00000043460	ugp2a (ENSHHUG00000043434) #30	vps54 (ENSHHUG00000043428) #31	ENSHHUG00000043417 ##32	rpl9 (ENSHHUG00000043410)	LGALSL (ENSHHUG00000043405) #33	ENSHHUG00000043403	aftpha (ENSHHUG00000043393) #34	sertad2b (ENSHHUG00000043391) #36	rab1ab (ENSHHUG00000043386)	ACTR2 (ENSHHUG00000043267)	SPRED2 (ENSHHUG00000043253)
Salmoninae_a	ANCESTRAL SPECIES	58	ENSGT00940000160720.b.a	ENSGT00390000009760.j	ENSGT00940000154830.d.b	ENSGT00390000002361.j	ENSGT01050000244891.E.a.a.d	ENSGT00970000195479.A.a	ENSGT00940000166495.d	ENSGT00390000007529.c #10	ENSGT00550000074956.e #19	ENSGT00940000157824.i.a.db #18	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #18	ENSGT00940000153408.B.s.b.n #17	ENSGT00940000158659.c #16	ENSGT00390000012029.hb #20	ENSGT00940000155345.r.b #22	ENSGT01100000263601.b	ENSGT00940000167432	ENSGT00530000063410.a.q.b.c #27	ENSGT00940000153464.B.z.a.h #30	ENSGT00390000000583.a #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##32	ENSGT00940000154186.a.r.f #34	ENSGT00530000063867.b.d #36	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a	ENSGT00940000156841.a.b.e	ENSGT00940000156327.l.p.a	ENSGT00390000009597.d.e.a	ENSGT00940000156530.c.`b.b.g.a	ENSGT00390000004284.f.f
Oncorhynchus	ANCESTRAL SPECIES	42	ENSGT00940000160720.b.a	ENSGT00390000009760.j	ENSGT00940000154830.d.b	ENSGT00390000002361.j	ENSGT01050000244891.E.a.a.d	ENSGT00970000195479.A.a	ENSGT00940000166495.d	ENSGT00390000007529.c #10	ENSGT00550000074956.e #19	ENSGT00940000157824.i.a.db.b #18	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #18	ENSGT00940000153408.B.s.b.n #17	ENSGT00940000158659.c #16	ENSGT00390000012029.hb #20	ENSGT00940000155345.r.b #22	ENSGT00940000161234.d.b.b #25	ENSGT00530000063410.a.q.b.c #27	ENSGT00940000153464.B.z.a.h #30	ENSGT00390000000583.a #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##32	ENSGT00940000154186.a.r.f #34	ENSGT00530000063867.b.d #36	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a	ENSGT00940000156841.a.b.e	ENSGT00940000156327.l.p.a	ENSGT00390000009597.d.e.a	ENSGT00940000156530.c.`b.b.g.a	ENSGT00390000004284.f.f	ENSGT00390000012248.i
Oncorhynchus_a	ANCESTRAL SPECIES	38	ENSGT00940000160720.b.a	ENSGT00390000009760.j	ENSGT00940000154830.d.b	ENSGT00390000002361.j	ENSGT01050000244891.E.a.a.d	ENSGT00970000195479.A.a	ENSGT00940000166495.d	ENSGT00390000007529.c #10	ENSGT00550000074956.e #19	ENSGT00940000157824.i.a.db.b #18	ENSGT00940000178862.b	ENSGT00940000157824.i.a.eb.b #18	ENSGT00940000153408.B.s.b.n #17	ENSGT00940000158659.c #16	ENSGT00390000012029.hb #20	ENSGT00940000155345.r.b #22	ENSGT00940000161234.d.b.b #25	ENSGT00530000063410.a.q.b.c #27	ENSGT00940000153464.B.z.a.h #30	ENSGT00390000000583.a #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##32	ENSGT00940000154186.a.r.f #34	ENSGT00530000063867.b.d #36	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a	ENSGT00940000156841.a.b.e	ENSGT00940000156327.l.p.a	ENSGT00390000009597.d.e.a	ENSGT00940000156530.c.`b.b.g.a	ENSGT00390000004284.f.f	ENSGT00390000012248.i
Coho salmon	MODERN SPECIES	12	PSMD12 (ENSOKIG00005019096)	PITPNC1 (ENSOKIG00005019049)	NOL11 (ENSOKIG00005018988)	BPTF (ENSOKIG00005018687)	C17orf58 (ENSOKIG00005018649)	ENSOKIG00005026604	ENSOKIG00005026590	ENSOKIG00005024950	pus10 (ENSOKIG00005024865) #10	cct4 (ENSOKIG00005024618) #19	ENSOKIG00005024587 #18	ENSOKIG00005024580 #18	ENSOKIG00005024422 #17	USP34 (ENSOKIG00005023249) #16	commd1 (ENSOKIG00005023193) #20	b3gnt2a (ENSOKIG00005023184) #22	OTX1 (ENSOKIG00005023176) #25	MDH1 (ENSOKIG00005023137) #27	UGP2 (ENSOKIG00005022462) #30	VPS54 (ENSOKIG00005020639) #31	ENSOKIG00005020548 ##32	AFTPH (ENSOKIG00005020534) #34	sertad2b (ENSOKIG00005020528) #36	RAB1B (ENSOKIG00005020521)	ACTR2 (ENSOKIG00005020367)	SPRED2 (ENSOKIG00005020341)	MEIS1 (ENSOKIG00005020265)	etaa1a (ENSOKIG00005020222)	PPP3R1 (ENSOKIG00005020178)	cnrip1a (ENSOKIG00005020161)	fbxo48 (ENSOKIG00005020152)
Chinook salmon	MODERN SPECIES	25	PITPNC1 (ENSOTSG00005012831)	nol11 (ENSOTSG00005012834)	BPTF (ENSOTSG00005012849)	C17orf58 (ENSOTSG00005012850)	ENSOTSG00005012852	ENSOTSG00005012858	ENSOTSG00005012868	pus10 (ENSOTSG00005016390) #10	cct4 (ENSOTSG00005016399) #19	ENSOTSG00005016455	ENSOTSG00005016456 #18	XPO1 (ENSOTSG00005016459) #17	USP34 (ENSOTSG00005016527) #16	ENSOTSG00005016550	commd1 (ENSOTSG00005016552) #20	b3gnt2a (ENSOTSG00005016554) #22	OTX1 (ENSOTSG00005016556) #25	MDH1 (ENSOTSG00005016559) #27	ugp2a (ENSOTSG00005016561) #30	vps54 (ENSOTSG00005016938) #31	ENSOTSG00005017663 ##32	aftpha (ENSOTSG00005017664) #34	ENSOTSG00005017665	sertad2b (ENSOTSG00005017666) #36	rab1ab (ENSOTSG00005017667)	ACTR2 (ENSOTSG00005017668)	SPRED2 (ENSOTSG00005017671)	meis1b (ENSOTSG00005017681)	etaa1a (ENSOTSG00005021779)	PPP3R1 (ENSOTSG00005021808)	cnrip1a (ENSOTSG00005021863)
Rainbow trout	MODERN SPECIES	4	PITPNC1 (ENSOMYG00000032457)	NOL11 (ENSOMYG00000032551)	BPTF (ENSOMYG00000033105)	C17orf58 (ENSOMYG00000035577)	ENSOMYG00000068540	ENSOMYG00000035602	ENSOMYG00000035654	ENSOMYG00000035758	cct4 (ENSOMYG00000035825) #19	ENSOMYG00000035913 #18	ENSOMYG00000035915 #18	XPO1 (ENSOMYG00000035963) #17	USP34 (ENSOMYG00000036212) #16	commd1 (ENSOMYG00000036577) #20	ENSOMYG00000052475	b3gnt2a (ENSOMYG00000036592) #22	OTX1 (ENSOMYG00000036609) #25	MDH1 (ENSOMYG00000036635) #27	UGP2 (ENSOMYG00000036702) #30	VPS54 (ENSOMYG00000036941) #31	ENSOMYG00000037389 ##32	AFTPH (ENSOMYG00000037408) #34	ENSOMYG00000037421	SERTAD2 (ENSOMYG00000037427) #36	ENSOMYG00000059668	ENSOMYG00000037436	ACTR2 (ENSOMYG00000037471)	SPRED2 (ENSOMYG00000037493)	MEIS1 (ENSOMYG00000037531)	etaa1a (ENSOMYG00000037561)	PPP3R1 (ENSOMYG00000037628)
Salmo	ANCESTRAL SPECIES	37	ENSGT00940000153510.a.b	ENSGT00940000160720.b.a	ENSGT00390000009760.j	ENSGT00940000154830.d.b	ENSGT00390000002361.j	ENSGT01050000244891.E.a.a.d	ENSGT00970000195479.A.a	ENSGT00940000166495.d	ENSGT00390000007529.c #10	ENSGT00550000074956.e #19	ENSGT00940000157824.i.a.db #18	ENSGT00940000157824.i.a.eb.b #18	ENSGT00940000153408.B.s.b.n #17	ENSGT00940000158659.c #16	ENSGT00390000012029.hb #20	ENSGT00940000155345.r.b #22	ENSGT01100000263601.b	ENSGT00940000167432	ENSGT00530000063410.a.q.b.c #27	ENSGT00940000153464.B.z.a.h #30	ENSGT00390000000583.a #31	ENSGT00950000183050.b.b.b.a.a.a.b.a.b ##32	ENSGT00940000154186.a.r.f #34	ENSGT00530000063867.b.d #36	ENSGT00940000155078.a.b.a.b.h.b	ENSGT00940000154556.a.a.a	ENSGT00940000156841.a.b.e	ENSGT00940000156327.l.p.a	ENSGT00390000009597.d.f.a	ENSGT00940000156530.c.`b.b.h	ENSGT00390000004284.f.f
Atlantic salmon	MODERN SPECIES	11	PSMD12 (ENSSSAG00000006373)	ENSSSAG00000087669	NOL11 (ENSSSAG00000006299)	BPTF (ENSSSAG00000002618)	C17orf58 (ENSSSAG00000002024)	ENSSSAG00000107647	ENSSSAG00000001998	ENSSSAG00000001575	tcpd (ENSSSAG00000001365) #19	pus10 (ENSSSAG00000001442) #10	ENSSSAG00000001342 #18	FAM161A (ENSSSAG00000001345) #18	XPO1 (ENSSSAG00000001278) #17	USP34 (ENSSSAG00000001012) #16	commd1 (ENSSSAG00000106111) #20	b3gnt2a (ENSSSAG00000105672) #22	ENSSSAG00000000945	OTX1 (ENSSSAG00000081994) #25	ENSSSAG00000104132	MDH1 (ENSSSAG00000000909) #27	UGP2 (ENSSSAG00000000820) #30	vps54 (ENSSSAG00000000613) #31	ENSSSAG00000090533 ##32	aftpha (ENSSSAG00000000430) #34	SERTAD2 (ENSSSAG00000112806) #36	ENSSSAG00000000410	ARP2A (ENSSSAG00000000385)	SPRED2 (ENSSSAG00000106065)	MEIS1 (ENSSSAG00000000278)	etaa1a (ENSSSAG00000053570)	PPP3R1 (ENSSSAG00000100782)
River trout	MODERN SPECIES	31	PITPNC1 (ENSSTUG00000038758)	nol11 (ENSSTUG00000038774)	BPTF (ENSSTUG00000038842)	C17orf58 (ENSSTUG00000039688)	ENSSTUG00000039694	ENSSTUG00000039725	ENSSTUG00000039741	pus10 (ENSSTUG00000040047) #10	cct4 (ENSSTUG00000040147) #19	ENSSTUG00000040233 #18	ENSSTUG00000040240 #18	XPO1 (ENSSTUG00000040259) #17	USP34 (ENSSTUG00000040582) #16	ENSSTUG00000041961	commd1 (ENSSTUG00000041981) #20	b3gnt2a (ENSSTUG00000041990) #22	ENSSTUG00000041996	otx2a (ENSSTUG00000042030)	mdh1aa (ENSSTUG00000042055) #27	ugp2a (ENSSTUG00000042169) #30	vps54 (ENSSTUG00000043877) #31	ENSSTUG00000044491 ##32	ENSSTUG00000044535	aftpha (ENSSTUG00000044544) #34	sertad2b (ENSSTUG00000044559) #36	rab1ab (ENSSTUG00000044565)	ACTR2 (ENSSTUG00000044585)	SPRED2 (ENSSTUG00000044781)	meis1b (ENSSTUG00000044793)	ENSSTUG00000044961	etaa1a (ENSSTUG00000044971)
Northern pike	MODERN SPECIES	8	ENSELUG00000013186	ENSELUG00000030740	ENSELUG00000013143	ENSELUG00000026789	ENSELUG00000013103	ENSELUG00000013058	ENSELUG00000013038	pus10 (ENSELUG00000012985) #10	cct4 (ENSELUG00000012818) #19	ENSELUG00000027408	ENSELUG00000012751 #18	XPO1 (ENSELUG00000012707) #17	USP34 (ENSELUG00000001065) #16	ENSELUG00000012557	commd1 (ENSELUG00000012544) #20	b3gnt2a (ENSELUG00000012534) #22	ENSELUG00000012525	otx2a (ENSELUG00000034038)	mdh1aa (ENSELUG00000012493) #27	ugp2a (ENSELUG00000012451) #30	vps54 (ENSELUG00000012386) #31	ENSELUG00000012297 ##32	ENSELUG00000012197	aftpha (ENSELUG00000012264) #34	sertad2b (ENSELUG00000000448) #36	rab1ab (ENSELUG00000012166)	ACTR2 (ENSELUG00000001618)	SPRED2 (ENSELUG00000012081)	meis1b (ENSELUG00000012000)	ENSELUG00000011957	ppp3r1a (ENSELUG00000011909)
Acanthomorphata	ANCESTRAL SPECIES	78	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00390000001858 #35	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Euacanthomorphacea	ANCESTRAL SPECIES	37	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00390000001858 #35	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Percomorphaceae	ANCESTRAL SPECIES	37	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00390000001858 #35	ENSGT00940000154186.a.r #34	ENSGT00940000154958	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b	ENSGT00940000156327.k
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00730000111173.h	ENSGT00530000063604.A	ENSGT00940000157525.a	ENSGT00940000177979	ENSGT00940000157556.a.a	ENSGT00940000157049.d	ENSGT01100000263540.B.c	ENSGT00390000007125.a	ENSGT00940000162476	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601
Fugu	MODERN SPECIES	8	NKX2-3 (ENSTRUG00000003800)	slc25a28 (ENSTRUG00000005224)	ENTPD7 (ENSTRUG00000004587)	ENSTRUG00000025299	atpv0e2 (ENSTRUG00000020769)	ENSTRUG00000004488	ENSTRUG00000030550	ENSTRUG00000026608	ENSTRUG00000003633	pus10 (ENSTRUG00000002744) #10	cct4 (ENSTRUG00000001819) #19	ENSTRUG00000033170 #18	ENSTRUG00000001723 #18	USP34 (ENSTRUG00000031278) #16	commd1 (ENSTRUG00000023095) #20	b3gnt2a (ENSTRUG00000001047) #22	ENSTRUG00000024122	prokr1a (ENSTRUG00000022723)	APLF (ENSTRUG00000000975)	fbxo48 (ENSTRUG00000000963)	cnrip1a (ENSTRUG00000023857)	ppp3r1a (ENSTRUG00000025969)	ENSTRUG00000025741	ENSTRUG00000000765	SPRED2 (ENSTRUG00000000716)	RAB1A (ENSTRUG00000029783)	ENSTRUG00000000596	dla (ENSTRUG00000010455)	ENSTRUG00000010240	hk1 (ENSTRUG00000009458)	myom2a (ENSTRUG00000008910)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000004477	tent4b (ENSTNIG00000004479)	ENSTNIG00000000628	ENSTNIG00000004480	esd (ENSTNIG00000004482)	ENSTNIG00000000864	ift74 (ENSTNIG00000004490)	ENSTNIG00000003839	HIVEP1 (ENSTNIG00000004491)	ENSTNIG00000004492	fitm1l (ENSTNIG00000004498)	trnau1apb (ENSTNIG00000000916)	ENSTNIG00000004499	znhit1 (ENSTNIG00000004500)	commd1 (ENSTNIG00000004505) #20	B3GNT2 (ENSTNIG00000004506) #22	ENSTNIG00000000444	ENSTNIG00000004507	ENSTNIG00000004508	SPRED2 (ENSTNIG00000004509)	rab1aa (ENSTNIG00000004511)	ENSTNIG00000000505	ENSTNIG00000005866	TAAR1 (ENSTNIG00000004514)	TAAR1 (ENSTNIG00000004515)	TAAR1 (ENSTNIG00000001410)	ENSTNIG00000004517	RIMBP2 (ENSTNIG00000004518)	ENSTNIG00000004519	slc35c2 (ENSTNIG00000004520)	ENSTNIG00000000310
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT01040000240400.c.a.b.a.b.a.a.b.b	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Ballan wrasse	MODERN SPECIES	133	nup133 (ENSLBEG00000001504)	taf5l (ENSLBEG00000001626)	capn9 (ENSLBEG00000001646)	ltv1 (ENSLBEG00000001681)	ENSLBEG00000001698	ifngr1 (ENSLBEG00000001735)	ENSLBEG00000001772	ENSLBEG00000001791	pus10 (ENSLBEG00000001879) #10	cct4 (ENSLBEG00000001977) #19	FAM161A (ENSLBEG00000002029) #18	ENSLBEG00000002069 #17	XPO1 (ENSLBEG00000002104) #17	USP34 (ENSLBEG00000002206) #16	commd1 (ENSLBEG00000002438) #20	b3gnt2a (ENSLBEG00000002450) #22	ENSLBEG00000002466	otx2a (ENSLBEG00000002499)	ENSLBEG00000002530	MDH1 (ENSLBEG00000002650) #27	GPM6A (ENSLBEG00000002738)	ENSLBEG00000002770	GLRA3 (ENSLBEG00000002786)	wdr17 (ENSLBEG00000002846)	hmgb2a (ENSLBEG00000002943)	pmm2 (ENSLBEG00000002979)	mtmr7b (ENSLBEG00000003020)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a.a.b	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b	ENSGT00940000156327.k
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT01100000264953	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.a.a.a.b	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b	ENSGT00940000156327.k
European seabass	MODERN SPECIES	20	ENSDLAG00005022238	ENSDLAG00005017662	ENSDLAG00005020174	ENSDLAG00005017832	ENSDLAG00005001355	slit1b (ENSDLAG00005001600)	ENSDLAG00005032028	ENSDLAG00005031665	hoga1 (ENSDLAG00005004866)	ENSDLAG00005004880	ENSDLAG00005004902	ENSDLAG00005004960 #17	ENSDLAG00005005184 #16	ENSDLAG00005005654	commd1 (ENSDLAG00005033691) #20	b3gnt2a (ENSDLAG00005032538) #22	ENSDLAG00005011667	ENSDLAG00005030008	ENSDLAG00005034687	otx2a (ENSDLAG00005006154)	ENSDLAG00005006165 #27	VPS54 (ENSDLAG00005006511) #31	ugp2a (ENSDLAG00005006357) #30	ENSDLAG00005006861 ##32	ENSDLAG00005029267	ENSDLAG00005028918 #34	ENSDLAG00005006908 #36	RAB1A (ENSDLAG00005035043)	ENSDLAG00005029588	ENSDLAG00005032979	SPRED2 (ENSDLAG00005021828)
Large yellow croaker	MODERN SPECIES	481	nup133 (ENSLCRG00005005595)	taf5l (ENSLCRG00005005571)	capn9 (ENSLCRG00005005500)	ENSLCRG00005005492	ltv1 (ENSLCRG00005005488)	ENSLCRG00005005486	ENSLCRG00005005485	ENSLCRG00005000905	pus10 (ENSLCRG00005000594) #10	cct4 (ENSLCRG00005000430) #19	ENSLCRG00005000400 #18	ENSLCRG00005000395 #18	XPO1 (ENSLCRG00005000379) #17	USP34 (ENSLCRG00005000282) #16	commd1 (ENSLCRG00005000214) #20	b3gnt2a (ENSLCRG00005000207) #22	ENSLCRG00005018810	otx2a (ENSLCRG00005018806)	mdh1aa (ENSLCRG00005018780) #27	ugp2a (ENSLCRG00005018763) #30	vps54 (ENSLCRG00005017864) #31	ENSLCRG00005017841 ##32	slc29a2 (ENSLCRG00005017839)	lgalsla (ENSLCRG00005017838) #33	aftpha (ENSLCRG00005017835) #34	ENSLCRG00005017834 #36	RAB1A (ENSLCRG00005017831)	ENSLCRG00005017830	ENSLCRG00005017829	ACTR2 (ENSLCRG00005017810)	SPRED2 (ENSLCRG00005017808)
Gilthead seabream	MODERN SPECIES		ltv1 (ENSSAUG00010001031)	ENSSAUG00010001025	ENSSAUG00010001023	ENSSAUG00010001022	ENSSAUG00010000467	pus10 (ENSSAUG00010000287) #10	cct4 (ENSSAUG00010000203) #19	ENSSAUG00010000167 #18	ENSSAUG00010000162 #18	XPO1 (ENSSAUG00010000126) #17	USP34 (ENSSAUG00010000076) #16	ENSSAUG00010000061	ENSSAUG00010000059	ENSSAUG00010000058	commd1 (ENSSAUG00010000055) #20	b3gnt2a (ENSSAUG00010000053) #22	ENSSAUG00010000051	otx2a (ENSSAUG00010000047)	mdh1aa (ENSSAUG00010000041) #27	slc29a2 (ENSSAUG00010000036)	ugp2a (ENSSAUG00010015967) #30	vps54 (ENSSAUG00010015425) #31	vps54 (ENSSAUG00010015872) #31	ENSSAUG00010015401 ##32	slc29a2 (ENSSAUG00010015396)	ENSSAUG00010015392 #33	ENSSAUG00010015387	aftpha (ENSSAUG00010015317) #34	ENSSAUG00010015314 #36	rab1aa (ENSSAUG00010015257)	ENSSAUG00010015251
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.b	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a
Perciformes_a	ANCESTRAL SPECIES		ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT01100000264953	ENSGT00390000002789	ENSGT00530000067736	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000177082	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.a.a	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Pike perch	DUPLICATION
Pike perch	MODERN SPECIES	178																B3GNT2 (ENSSLUG00000006228) #22	aftpha (ENSSLUG00000006238) #34	ENSSLUG00000006250	lgalsla (ENSSLUG00000006260) #33	slc29a2 (ENSSLUG00000006275)	ENSSLUG00000006285 ##32	vps54 (ENSSLUG00000006325) #31	ugp2a (ENSSLUG00000007420) #30	mdh1aa (ENSSLUG00000008772) #27	otx2a (ENSSLUG00000009049)	ENSSLUG00000009057	b3gnt2a (ENSSLUG00000009066) #22	commd1 (ENSSLUG00000009074) #20	ENSSLUG00000009079	ENSSLUG00000009084	USP34 (ENSSLUG00000009154) #16
Pike perch	MODERN SPECIES	178	capn9 (ENSSLUG00000013792)	ENSSLUG00000013777	ltv1 (ENSSLUG00000013771)	ENSSLUG00000013763	ENSSLUG00000013754	ENSSLUG00000013745	ENSSLUG00000013449	pus10 (ENSSLUG00000013288) #10	cct4 (ENSSLUG00000013217) #19	ENSSLUG00000013207 #18	XPO1 (ENSSLUG00000009410) #17	USP34 (ENSSLUG00000009154) #16	ENSSLUG00000009084	ENSSLUG00000009079	commd1 (ENSSLUG00000009074) #20	b3gnt2a (ENSSLUG00000009066) #22	ENSSLUG00000009057	otx2a (ENSSLUG00000009049)	mdh1aa (ENSSLUG00000008772) #27	ugp2a (ENSSLUG00000007420) #30	vps54 (ENSSLUG00000006325) #31	ENSSLUG00000006285 ##32	slc29a2 (ENSSLUG00000006275)	lgalsla (ENSSLUG00000006260) #33	ENSSLUG00000006250	aftpha (ENSSLUG00000006238) #34	B3GNT2 (ENSSLUG00000006228) #22
Channel bull blenny	MODERN SPECIES														XPO1 (ENSCGOG00000000002) #17	USP34 (ENSCGOG00000000003) #16	commd1 (ENSCGOG00000000007) #20	b3gnt2a (ENSCGOG00000000008) #22	ENSCGOG00000000009	otx2a (ENSCGOG00000000011)	mdh1aa (ENSCGOG00000000012) #27	ugp2a (ENSCGOG00000000013) #30	vps54 (ENSCGOG00000000014) #31	ENSCGOG00000000015 ##32	slc29a2 (ENSCGOG00000000016)	ENSCGOG00000000017	ENSCGOG00000000018	ENSCGOG00000000019	lgalsla (ENSCGOG00000000021) #33	aftpha (ENSCGOG00000000022) #34	ENSCGOG00000000023 #36	RAB1A (ENSCGOG00000000025)	ENSCGOG00000000026
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00940000155337.`b #33	ENSGT00940000154186.a.r #34	ENSGT00530000063867.b #36	ENSGT00940000154958	ENSGT00390000011698.c.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.b.i.b.b	ENSGT00940000155078.a.b.a.a	ENSGT00940000154556.a.a	ENSGT00940000156841.a.b
Lumpfish	MODERN SPECIES		taf5l (ENSCLMG00005015705)	ENSCLMG00005015704	capn9 (ENSCLMG00005015408)	ENSCLMG00005015407	ltv1 (ENSCLMG00005015406)	ENSCLMG00005015405	ENSCLMG00005015403	ENSCLMG00005015395	pus10 (ENSCLMG00005015393) #10	cct4 (ENSCLMG00005015151) #19	ENSCLMG00005015143	FAM161A (ENSCLMG00005015052) #18	XPO1 (ENSCLMG00005014924) #17	USP34 (ENSCLMG00005013361) #16	commd1 (ENSCLMG00005013349) #20	b3gnt2a (ENSCLMG00005013348) #22	ENSCLMG00005013347	otx2a (ENSCLMG00005013346)	mdh1aa (ENSCLMG00005013040) #27	ugp2a (ENSCLMG00005012905) #30	vps54 (ENSCLMG00005012756) #31	ENSCLMG00005012752 ##32	ENSCLMG00005012751	lgalsla (ENSCLMG00005012749) #33	ENSCLMG00005012748	aftpha (ENSCLMG00005012747) #34	ENSCLMG00005012745 #36	RAB1A (ENSCLMG00005012641)	ENSCLMG00005012639	ACTR2 (ENSCLMG00005012519)	SPRED2 (ENSCLMG00005012517)
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00990000213804	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Anabantoidei	ANCESTRAL SPECIES		ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Climbing perch	MODERN SPECIES		ENSATEG00000020587	ENSATEG00000029099	ENSATEG00000027244	ENSATEG00000025744	ENSATEG00000028029	ENSATEG00000029692	ENSATEG00000029425	ENSATEG00000028887	ENSATEG00000026690	ENSATEG00000028134	ENSATEG00000025940	ENSATEG00000026371	ENSATEG00000019721	ENSATEG00000008847	ENSATEG00000030116 #20	ENSATEG00000026705 #22	ENSATEG00000019677	otx2a (ENSATEG00000019664)	MDH1 (ENSATEG00000019629) #27	ugp2a (ENSATEG00000019600) #30	VPS54 (ENSATEG00000019507) #31	ENSATEG00000019473 ##32	ENSATEG00000019441	LGALSL (ENSATEG00000019405) #33	ENSATEG00000025975	pgap4 (ENSATEG00000019383)	ENSATEG00000019275	ENSATEG00000019207	ENSATEG00000019183	rcor3 (ENSATEG00000019156)	ENSATEG00000029533
Siamese fighting fish	MODERN SPECIES		capn9 (ENSBSLG00000012895)	ltv1 (ENSBSLG00000012938)	ENSBSLG00000012879	ENSBSLG00000012872	ENSBSLG00000012860	ENSBSLG00000012857	ENSBSLG00000012725	cct4 (ENSBSLG00000012636) #19	ENSBSLG00000012633	ENSBSLG00000012630 #18	XPO1 (ENSBSLG00000012551) #17	ENSBSLG00000011995	ENSBSLG00000011986	ENSBSLG00000011968	commd1 (ENSBSLG00000011953) #20	b3gnt2a (ENSBSLG00000011947) #22	otx2a (ENSBSLG00000011864)	MDH1 (ENSBSLG00000011545) #27	vps54 (ENSBSLG00000011230) #31	ENSBSLG00000011212 ##32	lgalsla (ENSBSLG00000011193) #33	MAL (ENSBSLG00000011186)	pgap4 (ENSBSLG00000011183)	tpcn3 (ENSBSLG00000010506)	ENSBSLG00000010299	kcnh1b (ENSBSLG00000010163)	rcor3 (ENSBSLG00000009783)	ENSBSLG00000009736	ATL2 (ENSBSLG00000008275)	ENSBSLG00000008208	ENSBSLG00000008202
Zig-zag eel	MODERN SPECIES		ltv1 (ENSMAMG00000026973)	ENSMAMG00000000550	ENSMAMG00000000519	ENSMAMG00000000510	ENSMAMG00000000476	ENSMAMG00000000385	pus10 (ENSMAMG00000023048) #10	cct4 (ENSMAMG00000023044) #19	ENSMAMG00000023042 #18	ENSMAMG00000024634 #18	XPO1 (ENSMAMG00000023037) #17	USP34 (ENSMAMG00000023021) #16	ENSMAMG00000023018	ENSMAMG00000025622	commd1 (ENSMAMG00000027465) #20	b3gnt2a (ENSMAMG00000023014) #22	ENSMAMG00000026920	otx2a (ENSMAMG00000023012)	ENSMAMG00000023011 #27	ugp2a (ENSMAMG00000023010) #30	ENSMAMG00000028651	ENSMAMG00000023004 ##32	ENSMAMG00000023000 #31	ENSMAMG00000022996	ENSMAMG00000022995 #33	ENSMAMG00000028526	ENSMAMG00000027183	ENSMAMG00000022992	pgap4 (ENSMAMG00000022991)	ENSMAMG00000022984	ENSMAMG00000022979
Carangaria	ANCESTRAL SPECIES		ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000018035	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Carangaria_A	ANCESTRAL SPECIES	42	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT01100000263977	ENSGT00770000121010	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000018035	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Seriola	ANCESTRAL SPECIES	80															ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Greater amberjack	MODERN SPECIES	116															commd1 (ENSSDUG00000017834) #20	b3gnt2a (ENSSDUG00000017840) #22	ENSSDUG00000017852	otx2a (ENSSDUG00000017869)	ENSSDUG00000017882	mdh1aa (ENSSDUG00000017899) #27	ugp2a (ENSSDUG00000017927) #30	vps54 (ENSSDUG00000017966) #31	ENSSDUG00000018103 ##32	slc29a2 (ENSSDUG00000018120)	lgalsla (ENSSDUG00000018145) #33	MAL (ENSSDUG00000018154)	pgap4 (ENSSDUG00000018157)	tpcn3 (ENSSDUG00000018167)	ENSSDUG00000018199	ENSSDUG00000018257	kcnh1b (ENSSDUG00000018286)
Yellowtail amberjack	MODERN SPECIES	2471															commd1 (ENSSLDG00000001928) #20	b3gnt2a (ENSSLDG00000001949) #22	ENSSLDG00000001964
Barramundi perch	MODERN SPECIES	62	nup133 (ENSLCAG00010027695)	ENSLCAG00010027704	taf5l (ENSLCAG00010027706)	capn9 (ENSLCAG00010027707)	ltv1 (ENSLCAG00010027708)	ENSLCAG00010027709	ENSLCAG00010027710	cct4 (ENSLCAG00010027712) #19	ENSLCAG00010027715	ENSLCAG00010027720 #18	ENSLCAG00010027721 #18	XPO1 (ENSLCAG00010027722) #17	USP34 (ENSLCAG00010027723) #16	ENSLCAG00010027726	commd1 (ENSLCAG00010027727) #20	b3gnt2a (ENSLCAG00010027728) #22	ENSLCAG00010027729	otx2a (ENSLCAG00010027730)	mdh1aa (ENSLCAG00010027731) #27	ugp2a (ENSLCAG00010027732) #30	ENSLCAG00010027736	ifrd2 (ENSLCAG00010027738)	amt (ENSLCAG00010027739)	hyal3 (ENSLCAG00010027740)	NAA80 (ENSLCAG00010027741)	prkar2aa (ENSLCAG00010027743)	mgll (ENSLCAG00010027745)	SLC26A6 (ENSLCAG00010027746)	ENSLCAG00010027750	wdr6 (ENSLCAG00010027751)	CELSR3 (ENSLCAG00010027757)
Ovalentaria	ANCESTRAL SPECIES		ENSGT00390000011529	ENSGT01090000260226	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000155793.a.a	ENSGT00940000154196.b
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT01090000260226	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018
Pomacentridae	ANCESTRAL SPECIES	67	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT01090000260226	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018
Pomacentridae_A	ANCESTRAL SPECIES	178									ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01080000258336	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018
Amphiprion	ANCESTRAL SPECIES	93	ENSGT00390000012679	ENSGT00940000160776	ENSGT00940000156314.b	ENSGT00940000159590	ENSGT00940000164531	ENSGT00390000014512.d	ENSGT00390000008848	ENSGT00940000157935.a	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01080000258336	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00950000182812.H.ab.a.d	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018
Clown anemonefish	MODERN SPECIES	3584														ENSAOCG00000014502	commd1 (ENSAOCG00000014511) #20	b3gnt2a (ENSAOCG00000014521) #22	ENSAOCG00000014527
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000005753	socs7 (ENSAPEG00000006016)	sp2 (ENSAPEG00000006091)	ENSAPEG00000006126	ENSAPEG00000006143	mrpl4 (ENSAPEG00000006208)	ENSAPEG00000006222	col9a1a (ENSAPEG00000006274)	ENSAPEG00000006350	pus10 (ENSAPEG00000006406) #10	cct4 (ENSAPEG00000006444) #19	FAM161A (ENSAPEG00000006516) #18	XPO1 (ENSAPEG00000006583) #17	USP34 (ENSAPEG00000006673) #16	commd1 (ENSAPEG00000006933) #20	b3gnt2a (ENSAPEG00000006948) #22	ENSAPEG00000006958	otx2a (ENSAPEG00000006978)	mdh1aa (ENSAPEG00000007003) #27	ugp2a (ENSAPEG00000007049) #30	ENSAPEG00000007092	vps54 (ENSAPEG00000007179) #31	ENSAPEG00000007272 ##32	slc29a2 (ENSAPEG00000007321)	lgalsla (ENSAPEG00000007442) #33	MAL (ENSAPEG00000007475)	pgap4 (ENSAPEG00000007548)	ENSAPEG00000007562	ENSAPEG00000007578	ENSAPEG00000007618	ENSAPEG00000007638
Spiny chromis	MODERN SPECIES	953																b3gnt2a (ENSAPOG00000021809) #22	ENSAPOG00000021819	ENSAPOG00000021827	ENSAPOG00000021850	ENSAPOG00000021858	otx2a (ENSAPOG00000021883)	mdh1aa (ENSAPOG00000021897) #27	ugp2a (ENSAPOG00000022030) #30	vps54 (ENSAPOG00000022172) #31	ENSAPOG00000022270 ##32	slc29a2 (ENSAPOG00000022332)	ENSAPOG00000022370
Bicolor damselfish	MODERN SPECIES	267	MCOLN3 (ENSSPAG00000016151)	ENSSPAG00000016229	si:ch211-262h13.5 (ENSSPAG00000016294)	ENSSPAG00000016310	ENSSPAG00000016325	EPHB1 (ENSSPAG00000016476)	gpc1a (ENSSPAG00000016661)	gpc5b (ENSSPAG00000016694)	nasp (ENSSPAG00000016710)	LRRC7 (ENSSPAG00000016745)	ENSSPAG00000016800	ENSSPAG00000016803	ENSSPAG00000016820	ENSSPAG00000016857	commd1 (ENSSPAG00000016907) #20	b3gnt2a (ENSSPAG00000016914) #22	ENSSPAG00000016918	otx2a (ENSSPAG00000016950)	ENSSPAG00000016962 #27	ugp2a (ENSSPAG00000017009) #30
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000155793.a.a	ENSGT00940000154196.b	ENSGT00940000163836.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00530000063498.A	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a	ENSGT00940000155710.b
Nile tilapia	MODERN SPECIES	18	ENSONIG00000042676 ##32	vps54 (ENSONIG00000015995) #31	ENSONIG00000031488	ugp2a (ENSONIG00000016000) #30	mdh1aa (ENSONIG00000016001) #27	ENSONIG00000031309	ENSONIG00000001826	KCNH1 (ENSONIG00000016131)	rcor3 (ENSONIG00000016128)	ENSONIG00000016125	ENSONIG00000016119	ENSONIG00000016118	ENSONIG00000028658	USP34 (ENSONIG00000012445) #16	commd1 (ENSONIG00000012443) #20	b3gnt2a (ENSONIG00000021044) #22	ENSONIG00000012442	gtpbp2b (ENSONIG00000011595)	ENSONIG00000010894	ENSONIG00000037919	ENSONIG00000016476
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	33	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT01020000231800	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b	ENSGT00940000155636.b.a
Haplochromini	ANCESTRAL SPECIES	52	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT01020000231800	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01080000258336	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b.f.a	ENSGT00940000153463.b.b.f.b
Burton s mouthbrooder	MODERN SPECIES	576															commd1 (ENSHBUG00000009252) #20	b3gnt2a (ENSHBUG00000009244) #22	ENSHBUG00000009242	otx2a (ENSHBUG00000009236)	mdh1aa (ENSHBUG00000009219) #27	ugp2a (ENSHBUG00000000232) #30	vps54 (ENSHBUG00000009152) #31	ENSHBUG00000009043 ##32	slc29a2 (ENSHBUG00000009022)	lgalsla (ENSHBUG00000009010) #33	MAL (ENSHBUG00000009002)	pgap4 (ENSHBUG00000008996)	ENSHBUG00000008993	RRP36 (ENSHBUG00000008974)	tp53bp2b (ENSHBUG00000008960)	GTPBP2 (ENSHBUG00000008900)	kcnh1b (ENSHBUG00000008867)
Haplochromini_A	ANCESTRAL SPECIES	59	ENSGT00390000003512.r	ENSGT00940000156048.e.a.a.a.a	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT01020000231800	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b.f.a	ENSGT00390000003049.b.a	ENSGT00940000156344.a
P. nyererei	MODERN SPECIES	484															commd1 (ENSPNYG00000018457) #20	b3gnt2a (ENSPNYG00000018441) #22	ENSPNYG00000018425	ENSPNYG00000018410	otx2a (ENSPNYG00000018398)	mdh1aa (ENSPNYG00000018371) #27	ugp2a (ENSPNYG00000018323) #30	vps54 (ENSPNYG00000018242) #31	ENSPNYG00000018201 ##32	slc29a2 (ENSPNYG00000018182)	lgalsla (ENSPNYG00000018161) #33	MAL (ENSPNYG00000018076)	pgap4 (ENSPNYG00000018057)	ENSPNYG00000018043	RRP36 (ENSPNYG00000018030)	tp53bp2b (ENSPNYG00000017914)	gtpbp2b (ENSPNYG00000017823)
Haplochromini_B	ANCESTRAL SPECIES	47	ENSGT00530000067736	ENSGT01100000264738.a	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT01100000263559.A	ENSGT01100000263514.A.e.a	ENSGT01060000248528.b.we.a	ENSGT00950000183089.c.a.k.a.sb.a	ENSGT00990000203553.c.a.b	ENSGT00390000007870.k.b	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00700000104550.a.i	ENSGT00530000064271	ENSGT00940000153463.b.b.f.a	ENSGT00940000155636.b.a	ENSGT01030000235581
Eastern happy	MODERN SPECIES	18	ENSACLG00000014956	ENSACLG00000014940	ENSACLG00000014877	ENSACLG00000014860	ENSACLG00000014852	ENSACLG00000014842	ENSACLG00000014834	sap30bp (ENSACLG00000014823)	ENSACLG00000014815	ENSACLG00000014801	ENSACLG00000014792	H3C1 (ENSACLG00000014721)	ENSACLG00000014709	ENSACLG00000014587	commd1 (ENSACLG00000014571) #20	b3gnt2a (ENSACLG00000014561) #22	ENSACLG00000014485	ENSACLG00000014463	ENSACLG00000014452	otx2a (ENSACLG00000014440)	mdh1aa (ENSACLG00000014364) #27	ugp2a (ENSACLG00000014321) #30	vps54 (ENSACLG00000014277) #31	ENSACLG00000014223 ##32	slc29a2 (ENSACLG00000014184)	lgalsla (ENSACLG00000014174) #33	MAL (ENSACLG00000014152)	pgap4 (ENSACLG00000014146)	ENSACLG00000014002	RRP36 (ENSACLG00000013982)	tp53bp2b (ENSACLG00000013896)
Zebra mbuna	MODERN SPECIES	1109	ENSMZEG00005002087	ENSMZEG00005002082	ENSMZEG00005002076	ENSMZEG00005002063	ENSMZEG00005002053	ENSMZEG00005002043	ENSMZEG00005001785	sap30bp (ENSMZEG00005001777)	ENSMZEG00005001692	ENSMZEG00005001686	ENSMZEG00005001598	ENSMZEG00005001588	ENSMZEG00005001480	ENSMZEG00005001470	commd1 (ENSMZEG00005001460) #20	b3gnt2a (ENSMZEG00005001456) #22	ENSMZEG00005001448	ENSMZEG00005001434	ENSMZEG00005001425	gstt1b (ENSMZEG00005001411)	gstt1b (ENSMZEG00005001399)	ddt (ENSMZEG00005001156)	chchd10 (ENSMZEG00005001153)	ENSMZEG00005001101	si:dkey-102c8.3 (ENSMZEG00005001077)	ENSMZEG00005001070	ENSMZEG00005001013	ENSMZEG00005001000	spcs3 (ENSMZEG00005000992)	kdm2aa (ENSMZEG00005000929)	ENSMZEG00005000877
Lyretail cichlid	MODERN SPECIES	461									ENSNBRG00000008864	ENSNBRG00000008856	ENSNBRG00000008847	ENSNBRG00000008824	ENSNBRG00000008809	H4C4 (ENSNBRG00000008803)	commd1 (ENSNBRG00000008770) #20	b3gnt2a (ENSNBRG00000008746) #22	ENSNBRG00000008728	ENSNBRG00000008705	mdh1aa (ENSNBRG00000008660) #27	vps54 (ENSNBRG00000008596) #31	ENSNBRG00000008568 ##32	slc29a2 (ENSNBRG00000008535)	ENSNBRG00000008514 #33	MAL (ENSNBRG00000008436)	pgap4 (ENSNBRG00000008419)	ENSNBRG00000008400	tp53bp2b (ENSNBRG00000008370)	ENSNBRG00000008351	kcnh1b (ENSNBRG00000008331)	rcor3 (ENSNBRG00000008291)	ENSNBRG00000008238
Midas cichlid	MODERN SPECIES	849															commd1 (ENSACIG00000003451) #20	b3gnt2a (ENSACIG00000003429) #22	ENSACIG00000003416
Atherinomorphae	ANCESTRAL SPECIES	61					ENSGT00390000002789	ENSGT00940000177040	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00390000007125.a	ENSGT00940000162476	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00940000154063.C.a.b	ENSGT00390000002789	ENSGT00940000177040	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b
Cyprinodontoidei	ANCESTRAL SPECIES	41	ENSGT00390000007125.a	ENSGT00940000162476	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00940000154063.C.a.b	ENSGT00390000002789	ENSGT00940000177040	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b
NAME_4	ANCESTRAL SPECIES	74	ENSGT01100000263540.B.c	ENSGT00390000007125.a	ENSGT00940000162476	ENSGT01010000222294.c.b.b.a.a.a.a.a.b.b.b.d	ENSGT00390000002789	ENSGT00940000177040	ENSGT00530000067736	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000154705.A.b	ENSGT00940000153759.a.b
Mummichog	MODERN SPECIES	2270	ENSFHEG00000002607	slc25a28 (ENSFHEG00000002603)	ENTPD7 (ENSFHEG00000002586)	ENSFHEG00000002561	atpv0e2 (ENSFHEG00000002546)	ltv1 (ENSFHEG00000002538)	ENSFHEG00000002510	ifngr1 (ENSFHEG00000002503)	ENSFHEG00000002501	pus10 (ENSFHEG00000002475) #10	cct4 (ENSFHEG00000002454) #19	FAM161A (ENSFHEG00000002424) #18	XPO1 (ENSFHEG00000002412) #17	USP34 (ENSFHEG00000002359) #16	commd1 (ENSFHEG00000002285) #20	b3gnt2a (ENSFHEG00000002280) #22	ENSFHEG00000002270	otx2a (ENSFHEG00000002265)	mdh1aa (ENSFHEG00000002256) #27	ugp2a (ENSFHEG00000002243) #30	vps54 (ENSFHEG00000002217) #31	ENSFHEG00000002167 ##32	slc29a2 (ENSFHEG00000002144)
Sheepshead minnow	MODERN SPECIES	337								ENSCVAG00000016786	pus10 (ENSCVAG00000016756) #10	cct4 (ENSCVAG00000016601) #19	FAM161A (ENSCVAG00000016570) #18	XPO1 (ENSCVAG00000016558) #17	USP34 (ENSCVAG00000016484) #16	ENSCVAG00000000624	commd1 (ENSCVAG00000016248) #20	b3gnt2a (ENSCVAG00000016242) #22	otx2a (ENSCVAG00000016235)	ENSCVAG00000016225	mdh1aa (ENSCVAG00000016210) #27	ugp2a (ENSCVAG00000016163) #30	vps54 (ENSCVAG00000016145) #31	ENSCVAG00000016101 ##32	slc29a2 (ENSCVAG00000016072)	lgalsla (ENSCVAG00000016062) #33	MAL (ENSCVAG00000016041)	pgap4 (ENSCVAG00000016037)	tpcn3 (ENSCVAG00000016027)	ENSCVAG00000015823	ENSCVAG00000015743
Poeciliinae	ANCESTRAL SPECIES	9	ENSGT00390000007125.a	ENSGT00940000162476	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00390000002789	ENSGT00940000177040	ENSGT00530000067736	ENSGT00940000179314	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000157864.a.a	ENSGT00940000160755
Poecilia	ANCESTRAL SPECIES	6	ENSGT00390000007125.a	ENSGT00940000162476	ENSGT01010000222294.c.b.b.a.a.a.a.a.a.a.a	ENSGT00940000177040	ENSGT00390000002789	ENSGT00530000067736	ENSGT00940000179314	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000157864.a.a	ENSGT00940000160755
NAME_6	ANCESTRAL SPECIES	274								ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018
Amazon molly	MODERN SPECIES	512							ENSPFOG00000000634	pus10 (ENSPFOG00000000909) #10	cct4 (ENSPFOG00000024647) #19	FAM161A (ENSPFOG00000001125) #18	XPO1 (ENSPFOG00000001349) #17	USP34 (ENSPFOG00000002074) #16	ENSPFOG00000003839	commd1 (ENSPFOG00000021967) #20	commd1 (ENSPFOG00000003910) #20	b3gnt2a (ENSPFOG00000003950) #22	ENSPFOG00000003959	otx2a (ENSPFOG00000004008)	mdh1aa (ENSPFOG00000004030) #27	ugp2a (ENSPFOG00000004151) #30	vps54 (ENSPFOG00000004273) #31	ENSPFOG00000004572 ##32	slc29a2 (ENSPFOG00000004682)	lgalsla (ENSPFOG00000004842) #33	MAL (ENSPFOG00000004880)	pgap4 (ENSPFOG00000020080)	ENSPFOG00000004941	ENSPFOG00000023857	zcchc4 (ENSPFOG00000004954)	ENSPFOG00000004956	pde5ab (ENSPFOG00000004961)
Sailfin molly	MODERN SPECIES	468														ENSPLAG00000010681	commd1 (ENSPLAG00000010664) #20	b3gnt2a (ENSPLAG00000010652) #22	ENSPLAG00000010642	ENSPLAG00000010637
Guppy	MODERN SPECIES	439	ENTPD7 (ENSPREG00000021157)	ENSPREG00000021136	atpv0e2 (ENSPREG00000021108)	ENSPREG00000021081	ENSPREG00000021067	ltv1 (ENSPREG00000021028)	ifngr1 (ENSPREG00000020996)	ENSPREG00000020980	ENSPREG00000020952	pus10 (ENSPREG00000020908) #10	cct4 (ENSPREG00000020867) #19	FAM161A (ENSPREG00000020846) #18	XPO1 (ENSPREG00000020796) #17	USP34 (ENSPREG00000020616) #16	commd1 (ENSPREG00000020559) #20	b3gnt2a (ENSPREG00000020553) #22	ENSPREG00000020532	otx2a (ENSPREG00000020505)	mdh1aa (ENSPREG00000020485) #27	ugp2a (ENSPREG00000020460) #30	vps54 (ENSPREG00000020356) #31	ENSPREG00000020322 ##32	slc29a2 (ENSPREG00000020299)	lgalsla (ENSPREG00000020286) #33	MAL (ENSPREG00000020274)	pgap4 (ENSPREG00000020267)	ENSPREG00000020234	ENSPREG00000020097	ENSPREG00000020056	SPHK1 (ENSPREG00000020027)	UBE2O (ENSPREG00000019941)
Platyfish	MODERN SPECIES	19	ENTPD7 (ENSXMAG00000005683)	ENSXMAG00000021763	atpv0e2 (ENSXMAG00000027815)	ENSXMAG00000005708	ltv1 (ENSXMAG00000029822)	ENSXMAG00000029535	ifngr1 (ENSXMAG00000005709)	ENSXMAG00000028107	ENSXMAG00000016020	pus10 (ENSXMAG00000005729) #10	cct4 (ENSXMAG00000005750) #19	FAM161A (ENSXMAG00000005787) #18	XPO1 (ENSXMAG00000005790) #17	USP34 (ENSXMAG00000005819) #16	commd1 (ENSXMAG00000027888) #20	b3gnt2a (ENSXMAG00000019813) #22	ENSXMAG00000005863	otx2a (ENSXMAG00000028961)	mdh1aa (ENSXMAG00000005875) #27	ugp2a (ENSXMAG00000005887) #30	vps54 (ENSXMAG00000005909) #31	ENSXMAG00000005935 ##32	slc29a2 (ENSXMAG00000005954)	LGALSL (ENSXMAG00000005970) #33	MAL (ENSXMAG00000028560)	pgap4 (ENSXMAG00000019814)	ENSXMAG00000020874	tpcn3 (ENSXMAG00000013385)	ENSXMAG00000023118	ENSXMAG00000005984	ENSXMAG00000024755
Aplocheiloidei	ANCESTRAL SPECIES	32															ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00940000154705.A.b
Mangrove rivulus	MODERN SPECIES	250															commd1 (ENSKMAG00000014338) #20	b3gnt2a (ENSKMAG00000014334) #22	ENSKMAG00000014313	otx2a (ENSKMAG00000014300)	mdh1aa (ENSKMAG00000014260) #27	ugp2a (ENSKMAG00000014197) #30	vps54 (ENSKMAG00000014096) #31	ENSKMAG00000014055 ##32	slc29a2 (ENSKMAG00000014022)	lgalsla (ENSKMAG00000014001) #33	ENSKMAG00000013982	pgap4 (ENSKMAG00000013977)	tpcn3 (ENSKMAG00000013904)	ENSKMAG00000013756	ENSKMAG00000013700
Oryzias	ANCESTRAL SPECIES	15	ENSGT00940000160142	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572	ENSGT00940000165589.a	ENSGT00940000165589.b	ENSGT00940000159730	ENSGT00940000159874	ENSGT00550000074820	ENSGT00440000039055	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT01020000230360.c.b.a.a.a.a.b.a.a.b.b.f	ENSGT00950000183089.c.a.k.a.fb
Oryzias_b	ANCESTRAL SPECIES	34	ENSGT00940000160142	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572	ENSGT00940000165589.a	ENSGT00940000165589.b	ENSGT00940000159730	ENSGT00940000159874	ENSGT00550000074820	ENSGT00440000039055	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953	ENSGT00950000183089.c.a.k.a.fb	ENSGT00990000203553.c.b.b
Javanese ricefish	MODERN SPECIES		ENSOJAG00000012502	ccr7 (ENSOJAG00000012426)	ENSOJAG00000012357	IGFBP4 (ENSOJAG00000012291)	ENSOJAG00000012281	ENSOJAG00000012261	ENSOJAG00000012254	ENSOJAG00000012244	PCGF2 (ENSOJAG00000012224)	PIP4K2B (ENSOJAG00000011506)	psmb3 (ENSOJAG00000011353)	cwc25 (ENSOJAG00000011346)	ENSOJAG00000011320	scrn2 (ENSOJAG00000011207)	commd1 (ENSOJAG00000011177) #20	b3gnt2a (ENSOJAG00000011165) #22	ENSOJAG00000011113	otx2a (ENSOJAG00000011100)	mdh1aa (ENSOJAG00000010826) #27	ugp2a (ENSOJAG00000010120) #30	vps54 (ENSOJAG00000009180) #31	ENSOJAG00000009060 ##32	slc29a2 (ENSOJAG00000009047)	ENSOJAG00000009034	lgalsla (ENSOJAG00000009011) #33	pgap4 (ENSOJAG00000008998)	tpcn3 (ENSOJAG00000008877)	ENSOJAG00000008822	ENSOJAG00000008536	ENSOJAG00000008526	ENSOJAG00000008505
Indian medaka	MODERN SPECIES	21	TNS4 (ENSOMEG00000019600)	ccr7 (ENSOMEG00000019575)	SMARCE1 (ENSOMEG00000019569)	IGFBP4 (ENSOMEG00000019551)	ENSOMEG00000019537	ENSOMEG00000019506	ENSOMEG00000000515	ENSOMEG00000019451	PCGF2 (ENSOMEG00000019443)	PIP4K2B (ENSOMEG00000019420)	psmb3 (ENSOMEG00000019384)	cwc25 (ENSOMEG00000019365)	scrn2 (ENSOMEG00000000510)	ENSOMEG00000019292	commd1 (ENSOMEG00000019278) #20	b3gnt2a (ENSOMEG00000000505) #22	ENSOMEG00000019249	otx2a (ENSOMEG00000019232)	mdh1aa (ENSOMEG00000019208) #27	ugp2a (ENSOMEG00000019140) #30	vps54 (ENSOMEG00000019074) #31	ENSOMEG00000019011 ##32	slc29a2 (ENSOMEG00000018982)	lgalsla (ENSOMEG00000018952) #33	ENSOMEG00000018924	pgap4 (ENSOMEG00000018912)	tpcn3 (ENSOMEG00000000912)	ENSOMEG00000018822	ENSOMEG00000000896	ENSOMEG00000018661	ENSOMEG00000018632
Oryzias_a	ANCESTRAL SPECIES	31	ENSGT00940000160142	ENSGT01030000234667.a.a.a.a.b	ENSGT00390000003628.a.a	ENSGT00940000159647	ENSGT00940000156782.d	ENSGT00940000158572	ENSGT00940000165589.a	ENSGT00990000204927	ENSGT00940000159730	ENSGT00940000159874	ENSGT00550000074820	ENSGT00440000039055	ENSGT00940000161498	ENSGT00390000013474.b.a	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263601	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00390000000583 #31	ENSGT00950000183050.b.b.b.a.a.a.b ##32	ENSGT00950000182898.a.a.a.a.a.h	ENSGT00940000155337.`b #33	ENSGT00940000154987.i.b.a.b	ENSGT00500000045018	ENSGT00940000162755	ENSGT00940000165311.b	ENSGT00550000074953
Chinese medaka	MODERN SPECIES	355	TNS4 (ENSOSIG00000023557)	ccr7 (ENSOSIG00000023553)	SMARCE1 (ENSOSIG00000023548)	IGFBP4 (ENSOSIG00000023539)	ENSOSIG00000023532	ENSOSIG00000023531	ENSOSIG00000023530	ENSOSIG00000023529	PCGF2 (ENSOSIG00000023528)	PIP4K2B (ENSOSIG00000023492)	psmb3 (ENSOSIG00000023461)	cwc25 (ENSOSIG00000023460)	sp6 (ENSOSIG00000023459)	scrn2 (ENSOSIG00000023457)	commd1 (ENSOSIG00000023456) #20	b3gnt2a (ENSOSIG00000023455) #22	ENSOSIG00000023452	otx2a (ENSOSIG00000023450)	mdh1aa (ENSOSIG00000023428) #27	ugp2a (ENSOSIG00000023369) #30	lgalsla (ENSOSIG00000023345) #33	MAL (ENSOSIG00000023343)	pgap4 (ENSOSIG00000023339)	tpcn3 (ENSOSIG00000023331)	ENSOSIG00000023317
Japanese Medaka HdrR	MODERN SPECIES		TNS4 (ENSORLG00000030337)	ccr7 (ENSORLG00000002623)	SMARCE1 (ENSORLG00000002654)	IGFBP4 (ENSORLG00000002661)	ENSORLG00000002674	ENSORLG00000002702	ENSORLG00000027866	ENSORLG00000029268	ENSORLG00000025709	PIP4K2B (ENSORLG00000022409)	psmb3 (ENSORLG00000019520)	cwc25 (ENSORLG00000018569)	sp6 (ENSORLG00000018574)	scrn2 (ENSORLG00000002816)	commd1 (ENSORLG00000022331) #20	b3gnt2a (ENSORLG00000002840) #22	ENSORLG00000002846	ENSORLG00000022190	otx2a (ENSORLG00000030023)	ENSORLG00000027545	mdh1 (ENSORLG00000002906) #27	ugp2a (ENSORLG00000002940) #30	vps54 (ENSORLG00000002974) #31	ENSORLG00000002992 ##32	ENSORLG00000003028	lgalsla (ENSORLG00000003039) #33	ENSORLG00000003048	pgap4 (ENSORLG00000003053)	tpcn3 (ENSORLG00000024684)	ENSORLG00000003068	ENSORLG00000003080
Pinecone sodierfish	MODERN SPECIES		capn9 (ENSMMDG00005017687)	ENSMMDG00005017685	ltv1 (ENSMMDG00005017677)	ENSMMDG00005017674	ENSMMDG00005017671	ENSMMDG00005017022	ENSMMDG00005012208	pus10 (ENSMMDG00005012020) #10	cct4 (ENSMMDG00005011867) #19	ENSMMDG00005011860 #18	XPO1 (ENSMMDG00005011834) #17	USP34 (ENSMMDG00005010790) #16	ENSMMDG00005010738	ENSMMDG00005010735	commd1 (ENSMMDG00005010733) #20	b3gnt2a (ENSMMDG00005010730) #22	ENSMMDG00005010726	otx2a (ENSMMDG00005010720)	mdh1aa (ENSMMDG00005010643) #27	ugp2a (ENSMMDG00005009111) #30	vps54 (ENSMMDG00005008574) #31	ENSMMDG00005008567 ##32	slc29a2 (ENSMMDG00005008565)	lgalsla (ENSMMDG00005008564) #33	ENSMMDG00005008562	aftpha (ENSMMDG00005008560) #34	ENSMMDG00005008554 #36	RAB1A (ENSMMDG00005008549)	ACTR2 (ENSMMDG00005008542)	SPRED2 (ENSMMDG00005008521)	ENSMMDG00005008505
Cod	MODERN SPECIES	16	slc43a1b (ENSGMOG00000003268)	tmx2b (ENSGMOG00000018462)	ENSGMOG00000025478	zdhhc5a (ENSGMOG00000018337)	ENSGMOG00000033309	ENSGMOG00000031575	p2rx3b (ENSGMOG00000014631)	ENSGMOG00000014659	ENSGMOG00000032097	ndufs8a (ENSGMOG00000014669)	ENSGMOG00000033598	ENSGMOG00000035609	ENSGMOG00000029985	ENSGMOG00000025136	ENSGMOG00000014680 #20	ENSGMOG00000035226 #22	ENSGMOG00000031691	otx2a (ENSGMOG00000032864)	MDH1 (ENSGMOG00000003426) #27	ugp2a (ENSGMOG00000003445) #30	VPS54 (ENSGMOG00000003472) #31	ENSGMOG00000037064 ##32	ENSGMOG00000012791	ENSGMOG00000025534	LGALSL (ENSGMOG00000009968) #33	ENSGMOG00000032402	AFTPH (ENSGMOG00000030916) #34	ENSGMOG00000025646 #36	RAB1A (ENSGMOG00000010022)	actr2a (ENSGMOG00000010030)	SPRED2 (ENSGMOG00000033943)
Otomorpha	ANCESTRAL SPECIES	102	ENSGT00940000158966	ENSGT00980000199991	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.j #18	ENSGT00940000178862	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT01100000263985	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00940000156258.f.b	ENSGT00390000008808.r.a	ENSGT00940000157923	ENSGT00950000182886.b.a.b	ENSGT01100000263621	ENSGT01100000263833	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000167000	ENSGT00390000004881
Otophysi	ANCESTRAL SPECIES	28	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00980000199991	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT01100000263985	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00530000063410.a.r #27	ENSGT00940000153464.B.z.a #30	ENSGT00940000156258.f.b	ENSGT00390000008808.r.a	ENSGT00940000157923	ENSGT00950000182886.b.a.b	ENSGT01100000263833	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000167000	ENSGT00390000004881
Characiphysae	ANCESTRAL SPECIES	32	ENSGT00940000157700.c	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00980000199991	ENSGT00390000002789	ENSGT01100000266716	ENSGT00990000204616	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a.e #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT01100000263985	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00940000156258.f.b	ENSGT00390000008808.r.a	ENSGT00940000157923	ENSGT00950000182886.b.a.b	ENSGT01100000263833	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000156461	ENSGT00940000167000	ENSGT00390000004881
Channel catfish	MODERN SPECIES	18	RFX1 (ENSIPUG00000005967)	rln3 (ENSIPUG00000005954)	spast (ENSIPUG00000005926)	UGP2 (ENSIPUG00000005867) #30	mdh1aa (ENSIPUG00000005818) #27	otx1 (ENSIPUG00000005796)	ENSIPUG00000005709	pus10 (ENSIPUG00000005627) #10	cct4 (ENSIPUG00000024407) #19	ENSIPUG00000024406 #18	ENSIPUG00000024404 #18	XPO1 (ENSIPUG00000024394) #17	USP34 (ENSIPUG00000024387) #16	ENSIPUG00000024386	Commd1 (ENSIPUG00000024384) #20	b3gnt2a (ENSIPUG00000024378) #22	ENSIPUG00000024377	ifngr1 (ENSIPUG00000024376)	ENSIPUG00000024375	ltv1 (ENSIPUG00000024372)	capn9 (ENSIPUG00000024364)	taf5l (ENSIPUG00000024363)	MAST1 (ENSIPUG00000024360)	atg4d (ENSIPUG00000024357)	actr2a (ENSIPUG00000024353)	SPRED2 (ENSIPUG00000024350)	MEIS1 (ENSIPUG00000024342)	etaa1 (ENSIPUG00000024335)	Ppp3r1 (ENSIPUG00000024309)	Cnrip1 (ENSIPUG00000024308)	fbxo48 (ENSIPUG00000024307)
Characiphysae_b	ANCESTRAL SPECIES	49	ENSGT00940000157700.c	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00980000199991	ENSGT00390000002789	ENSGT01100000266716	ENSGT00990000204616	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a.e #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00940000156258.f.b	ENSGT00390000008808.r.a	ENSGT00940000157923	ENSGT00950000182886.b.a.b	ENSGT01100000263833	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000167000	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000162838.g.a
Characoidei	ANCESTRAL SPECIES	54	ENSGT00530000063000.a.a.b.j	ENSGT00940000157700.c	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00980000199991	ENSGT00390000002789	ENSGT00990000204616	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a.e #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00940000163878	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT01100000263891	ENSGT00940000167432	ENSGT00530000063410.a.q.b #27	ENSGT00940000153464.B.z.a #30	ENSGT00940000156258.f.b	ENSGT00390000008808.r.a	ENSGT00940000157923	ENSGT00950000182886.b.a.b	ENSGT00990000205529	ENSGT00940000160148	ENSGT00940000167000	ENSGT00390000004881	ENSGT00390000014687	ENSGT00940000162838.g.a	ENSGT00390000011529
Red-bellied piranha	MODERN SPECIES	277	ndufaf5 (ENSPNAG00000003247)	esf1 (ENSPNAG00000014721)	btbd3a (ENSPNAG00000014712)	JAG1 (ENSPNAG00000014680)	srd5a2a (ENSPNAG00000014591)	ENSPNAG00000003181	ENSPNAG00000014575	psen2 (ENSPNAG00000003175)	dpy30 (ENSPNAG00000014561)	spast (ENSPNAG00000014543)	ugp2a (ENSPNAG00000014483) #30	mdh1aa (ENSPNAG00000003135) #27	otx2a (ENSPNAG00000014450)	ENSPNAG00000014436	commd1 (ENSPNAG00000014415) #20	b3gnt2a (ENSPNAG00000003115) #22	USP34 (ENSPNAG00000003107) #16	XPO1 (ENSPNAG00000014209) #17	FAM161A (ENSPNAG00000003027) #18	cct4 (ENSPNAG00000014071) #19	pus10 (ENSPNAG00000014003) #10	ENSPNAG00000013931
Mexicana tetra	MODERN SPECIES	3	atg4da (ENSAMXG00000039480)	MAST1 (ENSAMXG00000003343)	taf5l (ENSAMXG00000038854)	capn9 (ENSAMXG00000003267)	ltv1 (ENSAMXG00000003235)	ifngr1 (ENSAMXG00000032169)	ENSAMXG00000003141	pus10 (ENSAMXG00000003093) #10	cct4 (ENSAMXG00000003076) #19	FAM161A (ENSAMXG00000003072) #18	ENSAMXG00000029769 #17	ENSAMXG00000003069 #17	USP34 (ENSAMXG00000002913) #16	ENSAMXG00000042452	commd1 (ENSAMXG00000039464) #20	b3gnt2a (ENSAMXG00000035776) #22	ENSAMXG00000029375	otx2a (ENSAMXG00000043592)	mdh1aa (ENSAMXG00000002785) #27	ugp2a (ENSAMXG00000002756) #30	spast (ENSAMXG00000033738)	dpy30 (ENSAMXG00000002700)	psen2 (ENSAMXG00000002667)	srd5a2a (ENSAMXG00000031911)	ENSAMXG00000035391	JAG1 (ENSAMXG00000018695)	btbd3a (ENSAMXG00000029257)	esf1 (ENSAMXG00000001172)	ndufaf5 (ENSAMXG00000001169)	KIF16B (ENSAMXG00000001161)	nup133 (ENSAMXG00000032478)
Electric eel	MODERN SPECIES	208	atg4da (ENSEEEG00000017030)	ENSEEEG00000017036	taf5l (ENSEEEG00000017044)	capn9 (ENSEEEG00000017046)	ltv1 (ENSEEEG00000017049)	ENSEEEG00000017050	ENSEEEG00000017051	ENSEEEG00000017054	ENSEEEG00000017055	pus10 (ENSEEEG00000017062) #10	cct4 (ENSEEEG00000017085) #19	ENSEEEG00000017089 #18	XPO1 (ENSEEEG00000017098) #17	ENSEEEG00000017201	commd1 (ENSEEEG00000017203) #20	b3gnt2a (ENSEEEG00000017205) #22	ENSEEEG00000017208	otx2a (ENSEEEG00000017211)	mdh1aa (ENSEEEG00000017217) #27	ugp2a (ENSEEEG00000017229) #30	spast (ENSEEEG00000017258)	dpy30 (ENSEEEG00000017434)	psen2 (ENSEEEG00000017435)	srd5a2a (ENSEEEG00000017437)	ENSEEEG00000017438	ENSEEEG00000017439	JAG1 (ENSEEEG00000017441)	btbd3a (ENSEEEG00000017451)	esf1 (ENSEEEG00000017455)	ndufaf5 (ENSEEEG00000017461)	KIF16B (ENSEEEG00000017487)
Cyprinoidei	ANCESTRAL SPECIES	30	ENSGT00390000003512.r	ENSGT00940000156048.e.b.b	ENSGT00390000011529	ENSGT00940000153342.b	ENSGT00940000158966	ENSGT00390000002789	ENSGT00990000204616	ENSGT01100000263977	ENSGT00940000166495	ENSGT00390000007529 #10	ENSGT00550000074956 #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b #17	ENSGT00940000158659 #16	ENSGT00390000012029 #20	ENSGT00940000155345.r #22	ENSGT00940000156589	ENSGT00940000160382	ENSGT00940000157878	ENSGT00940000156171.g	ENSGT00390000017043	ENSGT00390000016264.d	ENSGT00940000157587.k	ENSGT00520000055649.a	ENSGT00730000111690.B.f.b.b.b.a	ENSGT00730000111690.B.f.a	ENSGT00730000111690.B.f.b.a.a	ENSGT00940000156164	ENSGT00940000156806	ENSGT00940000157174.c	ENSGT00940000154658.b.i.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	139	ENSGT00940000154396.b.a.a.b	ENSGT01050000244879.a.b.f.a	ENSGT00390000011987.i	ENSGT00390000017489.b.q.a	ENSGT00940000157340.k.a.f	ENSGT00940000159781.b.a	ENSGT00940000156644.e.a.b	ENSGT00390000003512.r.f	ENSGT00940000156048.e.b.b.a	ENSGT00940000158966.c	ENSGT00990000204616.c.b	ENSGT00940000166495.f	ENSGT00390000007529.h #10	ENSGT00550000074956.d #19	ENSGT00940000153408.B.s.b.p #17	ENSGT00940000155345.r.e #22	ENSGT00390000012029.fb #20	ENSGT01100000263985.a	ENSGT00940000156589.j.b	ENSGT00940000160382.c.b	ENSGT00940000157878.k	ENSGT00940000156171.g.i
Goldfish	MODERN SPECIES		ENSCARG00000001059	dla (ENSCARG00000001070)	RHOU (ENSCARG00000001110)	ENSCARG00000001113	acta1a (ENSCARG00000001114)	nup133 (ENSCARG00000001124)	taf5l (ENSCARG00000001144)	capn9 (ENSCARG00000001166)	ifngr1 (ENSCARG00000001275)	ENSCARG00000001289	ENSCARG00000001302	ENSCARG00000001326	cct4 (ENSCARG00000001396) #19	XPO1 (ENSCARG00000001499) #17	commd1 (ENSCARG00000001677) #20	b3gnt2a (ENSCARG00000001680) #22	ENSCARG00000001683	elmod2 (ENSCARG00000001689)	ucp1 (ENSCARG00000001698)	TBC1D9 (ENSCARG00000001811)	rnf150a (ENSCARG00000002684)	znf330 (ENSCARG00000002695)	ENSCARG00000002722	INPP4B (ENSCARG00000002814)	smarca5 (ENSCARG00000003621)	patl1 (ENSCARG00000003751)	ENSCARG00000003773	ENSCARG00000003779	osbp (ENSCARG00000003819)	aptx (ENSCARG00000003944)	SLC44A1 (ENSCARG00000004142)
Cyprininae_a	ANCESTRAL SPECIES	388																ENSGT00940000155345.r.e #22	ENSGT00390000012029.fb #20	ENSGT01100000263985.a	ENSGT00940000156589.j.b	ENSGT00940000160382.c.b	ENSGT00940000157878.k	ENSGT00940000156171.g.i	ENSGT00390000017043.d	ENSGT00390000016264.d.a	ENSGT00940000157587.k.b	ENSGT00940000157297.o.b	ENSGT00520000055649.a.f	ENSGT00730000111690.B.f.a.b.b.b	ENSGT00730000111690.B.f.b.a.a.b	ENSGT00940000156164.d	ENSGT00940000156806.j
Common carp reference	MODERN SPECIES	22	nup133 (ENSCCRG00000057119)	taf5l (ENSCCRG00000057032)	capn9 (ENSCCRG00000058378)	ENSCCRG00000074183	ifngr1 (ENSCCRG00000016308)	ltv1 (ENSCCRG00000079639)	ENSCCRG00000015458	ENSCCRG00000062601	ENSCCRG00000071993	ENSCCRG00000041566	ENSCCRG00000034316	pus10 (ENSCCRG00000016540) #10	cct4 (ENSCCRG00000054358) #19	ENSCCRG00000014265 #17	USP34 (ENSCCRG00000014708) #16	b3gnt2a (ENSCCRG00000067579) #22	ENSCCRG00000069925	elmod2 (ENSCCRG00000018480)	ucp1 (ENSCCRG00000018267)	TBC1D9 (ENSCCRG00000018329)	rnf150a (ENSCCRG00000081060)	znf330 (ENSCCRG00000021747)	il15 (ENSCCRG00000082000)	INPP4B (ENSCCRG00000000052)	smarca5 (ENSCCRG00000002594)	patl1 (ENSCCRG00000002516)	ENSCCRG00000064648	ENSCCRG00000070790	ENSCCRG00000062057	ENSCCRG00000060839	osbp (ENSCCRG00000043790)
Golden-line barbel	MODERN SPECIES	2818																b3gnt2a (ENSSGRG00000002668) #22	ENSSGRG00000002669
Cyprininae	ANCESTRAL SPECIES	338	ENSGT00940000156048.e.b.b.b	ENSGT00390000011529.g.b	ENSGT00390000011529.g.a	ENSGT00940000153342.b	ENSGT00940000158966.d	ENSGT01040000243168	ENSGT00390000002789.k	ENSGT00990000204616.c.a	ENSGT00940000166495.e	ENSGT00390000007529.g #10	ENSGT00550000074956.c #19	ENSGT00940000157824.i.a #18	ENSGT00940000153408.B.s.b.o #17	ENSGT00940000158659 #16	ENSGT00390000012029.gb #20	ENSGT00940000155345.r.f #22	ENSGT01100000263985.b	ENSGT00940000156589.i	ENSGT00940000160382.c.a	ENSGT00940000157878.l	ENSGT00940000156171.g.j	ENSGT00390000017043.d	ENSGT00940000178396	ENSGT00940000157587.k.a	ENSGT00940000157297.o.a	ENSGT00520000055649.a.e	ENSGT00730000111690.B.f.b.b.b.a
Goldfish	MODERN SPECIES	3522	RHOU (ENSCARG00000055801)	ENSCARG00000055806	acta1a (ENSCARG00000055821)	capn9 (ENSCARG00000055877)	ltv1 (ENSCARG00000056189)	ENSCARG00000056388	ENSCARG00000056450	ENSCARG00000056479	pus10 (ENSCARG00000056626) #10	cct4 (ENSCARG00000057382) #19	ENSCARG00000057425 #18	ENSCARG00000057448 #18	XPO1 (ENSCARG00000057498) #17	USP34 (ENSCARG00000057662) #16	commd1 (ENSCARG00000059847) #20	b3gnt2a (ENSCARG00000059908) #22	ENSCARG00000059923	elmod2 (ENSCARG00000059947)	ucp1 (ENSCARG00000059976)	TBC1D9 (ENSCARG00000060137)	znf330 (ENSCARG00000060923)	ENSCARG00000061032
Cyprininae_a	ANCESTRAL SPECIES	64	ENSGT00940000157340.k.a.f	ENSGT00940000159781.b.a	ENSGT00940000156644.e.a.b	ENSGT00390000003512.r.f	ENSGT00940000156048.e.b.b.a	ENSGT00390000011529.g.a	ENSGT00940000153342.b.y	ENSGT00940000158966.c	ENSGT00990000204616.c.b	ENSGT00940000166495.f	ENSGT00390000007529.g #10	ENSGT00550000074956.d #19	ENSGT00940000153408.B.s.b.p #17	ENSGT00940000158659 #16	ENSGT00390000012029.gb #20	ENSGT00940000155345.r.f #22	ENSGT01100000263985.b	ENSGT00940000156589.i	ENSGT00940000160382.c.a	ENSGT00940000157878.l	ENSGT00940000156171.g.j	ENSGT00390000017043.c	ENSGT00390000016264.d.b	ENSGT00940000157587.k.a	ENSGT00940000157297.o.a	ENSGT00520000055649.a.e	ENSGT00730000111690.B.f.a.b.a.b.b	ENSGT00730000111690.B.f.a.b.a.b.a.a	ENSGT00940000156164.c	ENSGT00940000156806.i	ENSGT00940000157174.c.b
Common carp reference	MODERN SPECIES	27	acta1a (ENSCCRG00000060597)	nup133 (ENSCCRG00000077497)	taf5l (ENSCCRG00000082336)	capn9 (ENSCCRG00000077170)	ENSCCRG00000040759	ltv1 (ENSCCRG00000071069)	ifngr1 (ENSCCRG00000040763)	ENSCCRG00000040789	pus10 (ENSCCRG00000041553) #10	cct4 (ENSCCRG00000063170) #19	ENSCCRG00000041780 #18	ENSCCRG00000041784 #18	XPO1 (ENSCCRG00000002433) #17	USP34 (ENSCCRG00000075191) #16	commd1 (ENSCCRG00000018303) #20	b3gnt2a (ENSCCRG00000018302) #22	elmod2 (ENSCCRG00000018293)	ucp1 (ENSCCRG00000054275)	TBC1D9 (ENSCCRG00000042157)	rnf150a (ENSCCRG00000021751)	znf330 (ENSCCRG00000011115)	il15 (ENSCCRG00000042448)	INPP4B (ENSCCRG00000075604)	smarca5 (ENSCCRG00000071045)	patl1 (ENSCCRG00000078307)	ENSCCRG00000062050	ENSCCRG00000078935	ENSCCRG00000078957	ENSCCRG00000067409	ENSCCRG00000062280	ENSCCRG00000077554
Golden-line barbel	MODERN SPECIES	251	smdt1b (ENSSGRG00000026600)	ENSSGRG00000026598	dla (ENSSGRG00000026601)	RHOU (ENSSGRG00000026606)	CCSAP (ENSSGRG00000026610)	acta1a (ENSSGRG00000026618)	capn9 (ENSSGRG00000027376)	ltv1 (ENSSGRG00000027443)	ENSSGRG00000027445	ENSSGRG00000027449	cct4 (ENSSGRG00000027455) #19	ENSSGRG00000027971 #18	XPO1 (ENSSGRG00000027973) #17	USP34 (ENSSGRG00000028022) #16	commd1 (ENSSGRG00000028070) #20	b3gnt2a (ENSSGRG00000028071) #22	ENSSGRG00000028072	elmod2 (ENSSGRG00000028074)	ucp1 (ENSSGRG00000028075)	TBC1D9 (ENSSGRG00000028086)	rnf150a (ENSSGRG00000028788)	znf330 (ENSSGRG00000028790)	il15 (ENSSGRG00000028792)	INPP4B (ENSSGRG00000028795)	smarca5 (ENSSGRG00000028832)	patl1 (ENSSGRG00000030942)	ENSSGRG00000030943
Zebrafish	MODERN SPECIES		CCSAP (ENSDARG00000025325)	acta1a (ENSDARG00000036371)	nup133 (ENSDARG00000010078)	taf5l (ENSDARG00000025808)	capn9 (ENSDARG00000012341)	ltv1 (ENSDARG00000008490)	ifngr1 (ENSDARG00000074771)	ENSDARG00000087205	pus10 (ENSDARG00000079973) #10	cct4 (ENSDARG00000013475) #19	FAM161A (ENSDARG00000089742) #18	XPO1 (ENSDARG00000078041) #17	USP34 (ENSDARG00000102252) #16	ENSDARG00000095360	commd1 (ENSDARG00000031203) #20	b3gnt2a (ENSDARG00000052376) #22	zgc:66455 (ENSDARG00000052375)	elmod2 (ENSDARG00000101669)	ucp1 (ENSDARG00000023151)	TBC1D9 (ENSDARG00000059900)	rnf150a (ENSDARG00000024827)	znf330 (ENSDARG00000020494)	il15 (ENSDARG00000052361)	ENSDARG00000113238	INPP4B (ENSDARG00000075201)	smarca5 (ENSDARG00000052348)	patl1 (ENSDARG00000017423)	ENSDARG00000111625	ENSDARG00000115887	osbp (ENSDARG00000004634)	aptx (ENSDARG00000027143)
Spotted gar	MODERN SPECIES	654	papolg (ENSLOCG00000016130) #7	rel (ENSLOCG00000016127) #8	pus10 (ENSLOCG00000016123) #10	pex13 (ENSLOCG00000016122) #11	SANBR (ENSLOCG00000016119) #12	ENSLOCG00000016117	ENSLOCG00000016116	ENSLOCG00000016115	USP34 (ENSLOCG00000016101) #16	XPO1 (ENSLOCG00000016095) #17	ENSLOCG00000016094	ENSLOCG00000016093	FAM161A (ENSLOCG00000016091) #18	cct4 (ENSLOCG00000016088) #19	commd1 (ENSLOCG00000016086) #20	b3gnt2a (ENSLOCG00000016084) #22	ENSLOCG00000016082	EHBP1 (ENSLOCG00000016075) #24	otx1 (ENSLOCG00000016074) #25	WDPCP (ENSLOCG00000016068) #26	mdh1ab (ENSLOCG00000016063) #27	ugp2a (ENSLOCG00000016059) #30	vps54 (ENSLOCG00000016056) #31	ENSLOCG00000016053 ##32	ENSLOCG00000016051	lgalslb (ENSLOCG00000016049) #33	AFTPH (ENSLOCG00000016046) #34	sertad2b (ENSLOCG00000017361) #36	slc1a4 (ENSLOCG00000016041) #37	cep68 (ENSLOCG00000016038)	rab1ab (ENSLOCG00000016037)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES		ENSECRG00000003144	ENSECRG00000003131	ENSECRG00000003113	tmem223 (ENSECRG00000003104)	ENSECRG00000003099	ENSECRG00000003092	tmem179ba (ENSECRG00000003084)	ENSECRG00000003051	b3gat3 (ENSECRG00000003046)	naa40 (ENSECRG00000003032)	rcor2 (ENSECRG00000002547)	ENSECRG00000002474	MARK2 (ENSECRG00000002389)	krcp (ENSECRG00000002273)	ENSECRG00000002262	ENSECRG00000002251 #22	sart1 (ENSECRG00000002228)	eif1ad (ENSECRG00000002218)	banf1 (ENSECRG00000002202)	ctsf (ENSECRG00000002183)	PC (ENSECRG00000002143)	ENSECRG00000002122	ENSECRG00000002109	ENSECRG00000002099	ENSECRG00000002087	ENSECRG00000001977	fkbp2 (ENSECRG00000001913)	ppp1r14ba (ENSECRG00000001899)	plcb3 (ENSECRG00000001823)	ENSECRG00000001689	ENSECRG00000001595
Reedfish	MODERN SPECIES	6	sptlc3 (ENSECRG00000017876)	ism1 (ENSECRG00000017908)	tasp1 (ENSECRG00000017954)	esf1 (ENSECRG00000017987)	ndufaf5 (ENSECRG00000018020)	flrt3 (ENSECRG00000018051)	KIF16B (ENSECRG00000018085)	SNRPB2 (ENSECRG00000018213)	OTOR (ENSECRG00000018250)	pcsk2 (ENSECRG00000018365)	BFSP1 (ENSECRG00000019405)	ENSECRG00000019440 #17	FAM161A (ENSECRG00000019469) #18	cct4 (ENSECRG00000019511) #19	commd1 (ENSECRG00000019553) #20	b3gnt2a (ENSECRG00000019579) #22	EHBP1 (ENSECRG00000019606) #24	otx1 (ENSECRG00000019648) #25	ENSECRG00000019668 #26	mdh1ab (ENSECRG00000019698) #27	ugp2a (ENSECRG00000019749) #30	vps54 (ENSECRG00000019821) #31	ENSECRG00000019880 ##32	lgalslb (ENSECRG00000019917) #33	aftpha (ENSECRG00000019951) #34	sertad2b (ENSECRG00000019987) #36	ENSECRG00000020001	rab1ab (ENSECRG00000020049)	zgc:153169 (ENSECRG00000020103)	ACTR2 (ENSECRG00000020143)	spred2b (ENSECRG00000020195)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	3320																ENSCMIG00000002641 #22
Elephant shark	MODERN SPECIES	1508	ENSCMIG00000003322	PNPT1 (ENSCMIG00000003245)	EFEMP1 (ENSCMIG00000003124)	ccdc85a (ENSCMIG00000003088)	ENSCMIG00000003085	fancl (ENSCMIG00000003084)	bcl11aa (ENSCMIG00000003083)	papolg (ENSCMIG00000002931) #7	rel (ENSCMIG00000002772) #8	pus10 (ENSCMIG00000002725) #10	SANBR (ENSCMIG00000002686) #12	USP34 (ENSCMIG00000002560) #16	FAM161A (ENSCMIG00000002520) #18	cct4 (ENSCMIG00000002389) #19	commd1 (ENSCMIG00000002319) #20	b3gnt2a (ENSCMIG00000002317) #22	ENSCMIG00000002311	ENSCMIG00000002307	EHBP1 (ENSCMIG00000002230) #24	WDPCP (ENSCMIG00000002187) #26	mdh1 (ENSCMIG00000002025) #27	ugp2 (ENSCMIG00000001606) #30	vps54 (ENSCMIG00000001326) #31	PELI1 (ENSCMIG00000001287) #32	lgalslb (ENSCMIG00000001270) #33	tbp (ENSCMIG00000001238)	btbd9 (ENSCMIG00000001219)	ENSCMIG00000001198	ENSCMIG00000001183	cmtr1 (ENSCMIG00000000861)	ENSCMIG00000000695
Cyclostomata	ANCESTRAL SPECIES	15															ENSGT00390000012029 #20	ENSGT00940000155345 #22	ENSGT00390000011180	ENSGT01100000263540.A.a.a	ENSGT00940000157776	ENSGT00950000182955.a.a.b
Lamprey	MODERN SPECIES	6103										wdr74 (ENSPMAG00000000842)	ENSPMAG00000000838	kif6 (ENSPMAG00000000829)	daam1b (ENSPMAG00000000819)	mocs1 (ENSPMAG00000000810)	commd1 (ENSPMAG00000000808) #20	b3gnt2a (ENSPMAG00000010427) #22	eif1ad (ENSPMAG00000000805)	ENSPMAG00000000785
Hagfish	MODERN SPECIES	616													ENSEBUG00000004367	ENSEBUG00000010006	ENSEBUG00000006431	b3gnt2a (ENSEBUG00000008488) #22	ENSEBUG00000016911	erlec1 (ENSEBUG00000004369)	ENSEBUG00000006624	ENSEBUG00000015841 #17