Euarchontoglires_A ANCESTRAL SPECIES 14 ENSGT00940000156983.a.a #7 ENSGT00950000185458 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00390000001858 #34 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Glires ANCESTRAL SPECIES 13 ENSGT00940000156983.a.a #7 ENSGT00950000185458 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Rodentia ANCESTRAL SPECIES 15 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Rodentia_B ANCESTRAL SPECIES 14 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Myomorpha ANCESTRAL SPECIES 24 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Muroidea ANCESTRAL SPECIES 21 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Muroidea_A ANCESTRAL SPECIES 13 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Cricetidae ANCESTRAL SPECIES 14 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Cricetinae ANCESTRAL SPECIES 37 ENSGT00940000158042 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Chinese hamster chok1gshd MODERN SPECIES 121 Bcl11a (ENSCGRG00001014052) #7 Papolg (ENSCGRG00001014951) #8 ENSCGRG00001011053 #9 Rel (ENSCGRG00001012159) #10 Pus10 (ENSCGRG00001015226) #11 Pex13 (ENSCGRG00001006134) #12 Sanbr (ENSCGRG00001018010) #13 1700093K21Rik (ENSCGRG00001014409) #14 Ahsa2 (ENSCGRG00001004669) #15 Usp34 (ENSCGRG00001006322) #16 Xpo1 (ENSCGRG00001000263) #17 ENSCGRG00001013463 #18 Cct4 (ENSCGRG00001016718) #19 ENSCGRG00001007132 #20 Commd1 (ENSCGRG00001007842) #21 B3gnt2 (ENSCGRG00001005196) #22 ENSCGRG00001025059 #23 Tmem17 (ENSCGRG00001024384) #24 Ehbp1 (ENSCGRG00001022633) #25 Otx1 (ENSCGRG00001017328) #26 Wdpcp (ENSCGRG00001012886) #27 ENSCGRG00001023990 #28 Mdh1 (ENSCGRG00001021102) #29 UGP2 (ENSCGRG00001012845) #30 Vps54 (ENSCGRG00001009286) #31 Peli1 (ENSCGRG00001021958) #32 Gm5065 (ENSCGRG00001013868) #33 ENSCGRG00001009126 #34 Aftph (ENSCGRG00001016162) #35 Sertad2 (ENSCGRG00001009657) #36 ENSCGRG00001005474 #37 Golden Hamster MODERN SPECIES 639 Vrk2 (ENSMAUG00000013376) Fancl (ENSMAUG00000012141) Bcl11a (ENSMAUG00000010170) #7 Papolg (ENSMAUG00000009088) #8 Rel (ENSMAUG00000020172) #10 Pus10 (ENSMAUG00000007507) #11 ENSMAUG00000009603 #12 ENSMAUG00000007138 #13 1700093K21Rik (ENSMAUG00000002621) #14 Ahsa2 (ENSMAUG00000019192) #15 Usp34 (ENSMAUG00000015413) #16 Xpo1 (ENSMAUG00000006769) #17 ENSMAUG00000012775 #18 Cct4 (ENSMAUG00000000518) #19 Commd1 (ENSMAUG00000010569) #21 B3gnt2 (ENSMAUG00000002963) #22 Tmem17 (ENSMAUG00000003448) #24 Ehbp1 (ENSMAUG00000000935) #25 Otx1 (ENSMAUG00000019114) #26 Wdpcp (ENSMAUG00000011349) #27 ENSMAUG00000012018 Mdh1 (ENSMAUG00000018086) #29 ENSMAUG00000012689 #30 Vps54 (ENSMAUG00000010788) #31 Peli1 (ENSMAUG00000012937) #32 ENSMAUG00000015033 #33 Aftph (ENSMAUG00000016557) #35 Sertad2 (ENSMAUG00000004242) #36 Slc1a4 (ENSMAUG00000019775) Cep68 (ENSMAUG00000014820) Rab1a (ENSMAUG00000012156) Cricetidae_B ANCESTRAL SPECIES 9 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Northern American deer mouse MODERN SPECIES 1 Bcl11a (ENSPEMG00000008063) #7 ENSPEMG00000027866 ENSPEMG00000008960 #8 Rel (ENSPEMG00000009851) #10 Pus10 (ENSPEMG00000013145) #11 Pex13 (ENSPEMG00000018236) #12 Sanbr (ENSPEMG00000002385) #13 1700093K21Rik (ENSPEMG00000004943) #14 Ahsa2 (ENSPEMG00000008242) #15 Usp34 (ENSPEMG00000013241) #16 Xpo1 (ENSPEMG00000010103) #17 ENSPEMG00000011408 #18 Cct4 (ENSPEMG00000014381) #19 Commd1 (ENSPEMG00000008857) #21 ENSPEMG00000013373 #20 B3gnt2 (ENSPEMG00000030694) #22 ENSPEMG00000029232 Tmem17 (ENSPEMG00000012666) #24 Ehbp1 (ENSPEMG00000014061) #25 Otx1 (ENSPEMG00000027636) #26 Wdpcp (ENSPEMG00000016341) #27 Mdh1 (ENSPEMG00000007456) #29 Ugp2 (ENSPEMG00000010268) #30 Vps54 (ENSPEMG00000012405) #31 Peli1 (ENSPEMG00000030617) #32 ENSPEMG00000015267 #33 Aftph (ENSPEMG00000010156) #35 Sertad2 (ENSPEMG00000027852) #36 ENSPEMG00000016241 Slc1a4 (ENSPEMG00000018063) Cep68 (ENSPEMG00000002161) Prairie vole MODERN SPECIES 92 ENSMOCG00000000119 ENSMOCG00000012151 ENSMOCG00000002753 #13 ENSMOCG00000011390 #13 1700093K21Rik (ENSMOCG00000014054) #14 ENSMOCG00000017180 #15 Usp34 (ENSMOCG00000002256) #16 Xpo1 (ENSMOCG00000012169) #17 ENSMOCG00000018790 ENSMOCG00000016877 #18 Cct4 (ENSMOCG00000011789) #19 Commd1 (ENSMOCG00000006391) #21 B3gnt2 (ENSMOCG00000000086) #22 Tmem17 (ENSMOCG00000015494) #24 Ehbp1 (ENSMOCG00000007287) #25 Otx1 (ENSMOCG00000014191) #26 Wdpcp (ENSMOCG00000003579) #27 Mdh1 (ENSMOCG00000015448) #29 Ugp2 (ENSMOCG00000009715) #30 Vps54 (ENSMOCG00000009563) #31 Peli1 (ENSMOCG00000016437) #32 Gm5065 (ENSMOCG00000014300) #33 ENSMOCG00000003932 #34 Aftph (ENSMOCG00000015081) #35 Sertad2 (ENSMOCG00000002173) #36 Slc1a4 (ENSMOCG00000001173) Cep68 (ENSMOCG00000003444) Rab1a (ENSMOCG00000017022) Murinae ANCESTRAL SPECIES 12 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00950000183152.A #20 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 ENSGT00940000154556 Mus ANCESTRAL SPECIES 14 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00950000183152.A #20 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 ENSGT00940000154556 Mus_A ANCESTRAL SPECIES 2 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00950000183152.A #20 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 ENSGT00940000154556 Mus_B ANCESTRAL SPECIES 2 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00950000183152.A #20 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 ENSGT00940000154556 Mouse MODERN SPECIES 2 Bcl11a (ENSMUSG00000000861) #7 A830031A19Rik (ENSMUSG00000055010) Papolg (ENSMUSG00000020273) #8 Rel (ENSMUSG00000020275) #10 Pus10 (ENSMUSG00000020280) #11 Pex13 (ENSMUSG00000020283) #12 Sanbr (ENSMUSG00000042208) #13 1700093K21Rik (ENSMUSG00000020286) #14 Ahsa2 (ENSMUSG00000020288) #15 Usp34 (ENSMUSG00000056342) #16 Xpo1 (ENSMUSG00000020290) #17 Fam161a (ENSMUSG00000049811) #18 Cct4 (ENSMUSG00000007739) #19 Commd1 (ENSMUSG00000051355) #21 Commd1b (ENSMUSG00000098650) B3gnt2 (ENSMUSG00000051650) #22 Tmem17 (ENSMUSG00000049904) #24 Ehbp1 (ENSMUSG00000042302) #25 Otx1 (ENSMUSG00000005917) #26 Wdpcp (ENSMUSG00000020319) #27 Mdh1 (ENSMUSG00000020321) #29 Ugp2 (ENSMUSG00000001891) #30 Vps54 (ENSMUSG00000020128) #31 Peli1 (ENSMUSG00000020134) #32 Lgalsl (ENSMUSG00000042363) #33 Aftph (ENSMUSG00000049659) #35 Sertad2 (ENSMUSG00000049800) #36 Slc1a4 (ENSMUSG00000020142) Cep68 (ENSMUSG00000044066) Rab1a (ENSMUSG00000020149) Actr2 (ENSMUSG00000020152) Mus_C ANCESTRAL SPECIES 3 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00950000183152.A #20 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 ENSGT00940000154556 spretus MODERN SPECIES 2 A830031A19Rik (MGP_SPRETEiJ_G0016988) Papolg (MGP_SPRETEiJ_G0016987) #8 Rel (MGP_SPRETEiJ_G0016986) #10 Pus10 (MGP_SPRETEiJ_G0016985) #11 MGP_SPRETEiJ_G0016984 #12 Sanbr (MGP_SPRETEiJ_G0016983) #13 1700093K21Rik (MGP_SPRETEiJ_G0016982) #14 Ahsa2 (MGP_SPRETEiJ_G0016981) #15 Usp34 (MGP_SPRETEiJ_G0016980) #16 Xpo1 (MGP_SPRETEiJ_G0016979) #17 MGP_SPRETEiJ_G0016978 #18 Cct4 (MGP_SPRETEiJ_G0016977) #19 MGP_SPRETEiJ_G0016976 #20 Commd1 (MGP_SPRETEiJ_G0016975) #21 MGP_SPRETEiJ_G0016974 #21 B3gnt2 (MGP_SPRETEiJ_G0016973) #22 MGP_SPRETEiJ_G0016972 Tmem17 (MGP_SPRETEiJ_G0016971) #24 Ehbp1 (MGP_SPRETEiJ_G0016970) #25 Otx1 (MGP_SPRETEiJ_G0016969) #26 Wdpcp (MGP_SPRETEiJ_G0016968) #27 Mdh1 (MGP_SPRETEiJ_G0016967) #29 Ugp2 (MGP_SPRETEiJ_G0016966) #30 Vps54 (MGP_SPRETEiJ_G0016965) #31 Peli1 (MGP_SPRETEiJ_G0016964) #32 Lgalsl (MGP_SPRETEiJ_G0016963) #33 Aftph (MGP_SPRETEiJ_G0016962) #35 Sertad2 (MGP_SPRETEiJ_G0016961) #36 Slc1a4 (MGP_SPRETEiJ_G0016960) Cep68 (MGP_SPRETEiJ_G0016959) Rab1a (MGP_SPRETEiJ_G0016958) Steppe mouse MODERN SPECIES 3019 Xpo1 (ENSMSIG00000031855) #17 ENSMSIG00000031860 ENSMSIG00000031862 #18 Cct4 (ENSMSIG00000031863) #19 ENSMSIG00000031865 Commd1 (ENSMSIG00000031866) #21 ENSMSIG00000031867 #20 B3gnt2 (ENSMSIG00000031870) #22 ENSMSIG00000031871 ENSMSIG00000031872 Tmem17 (ENSMSIG00000031873) #24 Ehbp1 (ENSMSIG00000031874) #25 Otx1 (ENSMSIG00000031875) #26 Wdpcp (ENSMSIG00000031876) #27 Mdh1 (ENSMSIG00000031877) #29 ENSMSIG00000031878 ENSMSIG00000031879 Ryukyu mouse MODERN SPECIES 2 Bcl11a (MGP_CAROLIEiJ_G0016146) #7 MGP_CAROLIEiJ_G0016145 Papolg (MGP_CAROLIEiJ_G0016144) #8 Rel (MGP_CAROLIEiJ_G0016143) #10 Pus10 (MGP_CAROLIEiJ_G0016142) #11 Pex13 (MGP_CAROLIEiJ_G0016141) #12 Sanbr (MGP_CAROLIEiJ_G0016140) #13 1700093K21Rik (MGP_CAROLIEiJ_G0016139) #14 Ahsa2 (MGP_CAROLIEiJ_G0016138) #15 Usp34 (MGP_CAROLIEiJ_G0016137) #16 Xpo1 (MGP_CAROLIEiJ_G0016136) #17 MGP_CAROLIEiJ_G0016135 #18 Cct4 (MGP_CAROLIEiJ_G0016134) #19 MGP_CAROLIEiJ_G0016133 #20 MGP_CAROLIEiJ_G0016132 #21 B3gnt2 (MGP_CAROLIEiJ_G0016131) #22 MGP_CAROLIEiJ_G0016130 #21 MGP_CAROLIEiJ_G0016129 Tmem17 (MGP_CAROLIEiJ_G0016128) #24 Ehbp1 (MGP_CAROLIEiJ_G0016127) #25 Otx1 (MGP_CAROLIEiJ_G0016126) #26 Wdpcp (MGP_CAROLIEiJ_G0016125) #27 Mdh1 (MGP_CAROLIEiJ_G0016124) #29 Ugp2 (MGP_CAROLIEiJ_G0016123) #30 Vps54 (MGP_CAROLIEiJ_G0016122) #31 Peli1 (MGP_CAROLIEiJ_G0016121) #32 Gm5065 (MGP_CAROLIEiJ_G0016120) #33 Aftph (MGP_CAROLIEiJ_G0016119) #35 Sertad2 (MGP_CAROLIEiJ_G0016118) #36 Slc1a4 (MGP_CAROLIEiJ_G0016117) Cep68 (MGP_CAROLIEiJ_G0016116) Shrew mouse MODERN SPECIES 4 MGP_PahariEiJ_G0016745 Papolg (MGP_PahariEiJ_G0016746) #8 Rel (MGP_PahariEiJ_G0016747) #10 Pus10 (MGP_PahariEiJ_G0016748) #11 Pex13 (MGP_PahariEiJ_G0016749) #12 Sanbr (MGP_PahariEiJ_G0016750) #13 1700093K21Rik (MGP_PahariEiJ_G0016751) #14 Ahsa2 (MGP_PahariEiJ_G0016752) #15 MGP_PahariEiJ_G0016753 #16 Xpo1 (MGP_PahariEiJ_G0016754) #17 MGP_PahariEiJ_G0016755 #18 Cct4 (MGP_PahariEiJ_G0016756) #19 Commd1 (MGP_PahariEiJ_G0016757) #21 MGP_PahariEiJ_G0016758 #21 MGP_PahariEiJ_G0016759 #20 B3gnt2 (MGP_PahariEiJ_G0016760) #22 MGP_PahariEiJ_G0016761 Tmem17 (MGP_PahariEiJ_G0016762) #24 Ehbp1 (MGP_PahariEiJ_G0016763) #25 Otx1 (MGP_PahariEiJ_G0016764) #26 MGP_PahariEiJ_G0016765 #27 Mdh1 (MGP_PahariEiJ_G0016766) #29 Ugp2 (MGP_PahariEiJ_G0016767) #30 Vps54 (MGP_PahariEiJ_G0016768) #31 Peli1 (MGP_PahariEiJ_G0016769) #32 MGP_PahariEiJ_G0016770 #33 Lgalsl (MGP_PahariEiJ_G0016771) #33 Aftph (MGP_PahariEiJ_G0016772) #35 Sertad2 (MGP_PahariEiJ_G0016773) #36 Slc1a4 (MGP_PahariEiJ_G0016774) Cep68 (MGP_PahariEiJ_G0016775) Rat MODERN SPECIES 5 Papolg (ENSRNOG00000006261) #8 Rel (ENSRNOG00000054437) #10 Pus10 (ENSRNOG00000054151) #11 Pex13 (ENSRNOG00000054896) #12 ENSRNOG00000062465 Sanbr (ENSRNOG00000054669) #13 C14h2orf74 (ENSRNOG00000051590) #14 Ahsa2 (ENSRNOG00000052142) #15 LOC108352814 (ENSRNOG00000071093) Usp34 (ENSRNOG00000051889) #16 Xpo1 (ENSRNOG00000009935) #17 Fam161a (ENSRNOG00000009881) #18 Cct4 (ENSRNOG00000009642) #19 Zrsr2-ps1 (ENSRNOG00000009639) #20 Commd1 (ENSRNOG00000009281) #21 B3gnt2 (ENSRNOG00000009267) #22 LOC100361636 (ENSRNOG00000033346) AABR07016623.1 (ENSRNOG00000009240) Tmem17 (ENSRNOG00000009220) #24 Ehbp1 (ENSRNOG00000008917) #25 Otx1 (ENSRNOG00000065081) #26 ENSRNOG00000065408 Wdpcp (ENSRNOG00000054331) #27 Mdh1 (ENSRNOG00000008103) #29 Ugp2 (ENSRNOG00000008079) #30 Vps54 (ENSRNOG00000007125) #31 Peli1 (ENSRNOG00000006329) #32 LOC108352809 (ENSRNOG00000042277) Lgalsl (ENSRNOG00000005464) #33 LOC108352861 (ENSRNOG00000029052) Aftph (ENSRNOG00000005411) #35 Upper Galilee mountains blind mole rat MODERN SPECIES 1270 Papolg (ENSNGAG00000001120) #8 Rel (ENSNGAG00000005092) #10 Pus10 (ENSNGAG00000009489) #11 Pex13 (ENSNGAG00000012683) #12 ENSNGAG00000015574 #13 1700093K21Rik (ENSNGAG00000023598) #14 Ahsa2 (ENSNGAG00000008076) #15 Usp34 (ENSNGAG00000023618) #16 Xpo1 (ENSNGAG00000022158) #17 ENSNGAG00000002122 #18 Cct4 (ENSNGAG00000023486) #19 Commd1 (ENSNGAG00000019828) #21 ENSNGAG00000011974 #20 B3gnt2 (ENSNGAG00000022382) #22 ENSNGAG00000018903 Lesser Egyptian jerboa MODERN SPECIES 74 Prkd3 (ENSJJAG00000021089) Ndufaf7 (ENSJJAG00000021194) Cebpz (ENSJJAG00000011428) Cebpzos (ENSJJAG00000016694) ENSJJAG00000015000 Gpatch11 (ENSJJAG00000015127) Heatr5b (ENSJJAG00000016395) Strn (ENSJJAG00000022124) Vit (ENSJJAG00000000898) Fez2 (ENSJJAG00000024083) Crim1 (ENSJJAG00000006651) Fam98a (ENSJJAG00000012732) Rasgrp3 (ENSJJAG00000021552) ENSJJAG00000003107 #19 Commd1 (ENSJJAG00000006007) #21 B3gnt2 (ENSJJAG00000007561) #22 Tmem17 (ENSJJAG00000007029) #24 Ehbp1 (ENSJJAG00000023917) #25 Otx1 (ENSJJAG00000011287) #26 ENSJJAG00000015148 #27 ENSJJAG00000014833 #27 Mdh1 (ENSJJAG00000024369) #29 Ugp2 (ENSJJAG00000014432) #30 Vps54 (ENSJJAG00000012401) #31 Peli1 (ENSJJAG00000000296) #32 Gm5065 (ENSJJAG00000016772) #33 ENSJJAG00000020384 #35 Sertad2 (ENSJJAG00000015989) #36 Slc1a4 (ENSJJAG00000002418) Cep68 (ENSJJAG00000016421) Rab1a (ENSJJAG00000014396) Kangaroo rat MODERN SPECIES 382 Bcl11a (ENSDORG00000010064) #7 Papolg (ENSDORG00000016228) #8 ENSDORG00000030049 Rel (ENSDORG00000011388) #10 Pus10 (ENSDORG00000005550) #11 Pex13 (ENSDORG00000009725) #12 ENSDORG00000011221 #13 ENSDORG00000011227 #14 Ahsa2 (ENSDORG00000012061) #15 Usp34 (ENSDORG00000012062) #16 Xpo1 (ENSDORG00000013050) #17 ENSDORG00000026102 #18 Cct4 (ENSDORG00000002542) #19 Commd1 (ENSDORG00000001166) #21 ENSDORG00000027292 B3gnt2 (ENSDORG00000024683) #22 Tmem17 (ENSDORG00000024954) #24 Ehbp1 (ENSDORG00000002628) #25 ENSDORG00000023858 Otx1 (ENSDORG00000024553) #26 Wdpcp (ENSDORG00000003329) #27 ENSDORG00000009021 Mdh1 (ENSDORG00000000099) #29 Rasl2-9 (ENSDORG00000027038) Ugp2 (ENSDORG00000013164) #30 Vps54 (ENSDORG00000009782) #31 Peli1 (ENSDORG00000025404) #32 ENSDORG00000027919 #33 ENSDORG00000004159 #35 ENSDORG00000027058 #34 Sertad2 (ENSDORG00000025954) #36 Rodentia_A ANCESTRAL SPECIES 14 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00390000001858 #34 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Hystricomorpha ANCESTRAL SPECIES 8 ENSGT00940000158042 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00390000001858 #34 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A.f ENSGT00940000154958 Hystricomorpha_a ANCESTRAL SPECIES 35 ENSGT00940000157361 ENSGT00940000158042 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A.f ENSGT00940000154958 Hystricomorpha_b ANCESTRAL SPECIES 33 ENSGT00940000157361 ENSGT00940000158042 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178.g #13 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00390000001858 #34 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A.f ENSGT00940000154958.y Long-tailed chinchilla MODERN SPECIES 131 CCDC85A (ENSCLAG00000015417) VRK2 (ENSCLAG00000016561) FANCL (ENSCLAG00000011359) BCL11A (ENSCLAG00000009184) #7 PAPOLG (ENSCLAG00000008603) #8 REL (ENSCLAG00000007490) #10 PUS10 (ENSCLAG00000011001) #11 PEX13 (ENSCLAG00000015482) #12 SANBR (ENSCLAG00000009068) #13 ENSCLAG00000007857 #15 USP34 (ENSCLAG00000010299) #16 XPO1 (ENSCLAG00000012953) #17 FAM161A (ENSCLAG00000011652) #18 CCT4 (ENSCLAG00000014321) #19 COMMD1 (ENSCLAG00000013262) #21 B3GNT2 (ENSCLAG00000013147) #22 TMEM17 (ENSCLAG00000013487) #24 EHBP1 (ENSCLAG00000007561) #25 OTX1 (ENSCLAG00000010265) #26 ENSCLAG00000008400 #27 MDH1 (ENSCLAG00000007815) #29 UGP2 (ENSCLAG00000010416) #30 VPS54 (ENSCLAG00000007366) #31 PELI1 (ENSCLAG00000006481) #32 LGALSL (ENSCLAG00000015114) #33 ENSCLAG00000012344 #34 AFTPH (ENSCLAG00000012032) #35 SERTAD2 (ENSCLAG00000008318) #36 SLC1A4 (ENSCLAG00000008207) CEP68 (ENSCLAG00000012193) RAB1A (ENSCLAG00000014766) Degu MODERN SPECIES 119 ENSODEG00000012174 PAPOLG (ENSODEG00000012424) #8 REL (ENSODEG00000013430) #10 PUS10 (ENSODEG00000011720) #11 ENSODEG00000012067 #13 ENSODEG00000011830 #15 USP34 (ENSODEG00000011790) #16 ENSODEG00000020015 XPO1 (ENSODEG00000012632) #17 ENSODEG00000011466 ENSODEG00000011239 ENSODEG00000012087 ENSODEG00000012263 ENSODEG00000011618 #19 ENSODEG00000011341 B3GNT2 (ENSODEG00000011165) #22 ENSODEG00000011529 #24 EHBP1 (ENSODEG00000012259) #25 OTX1 (ENSODEG00000012071) #26 ENSODEG00000011160 ENSODEG00000011103 ENSODEG00000019821 WDPCP (ENSODEG00000011330) #27 MDH1 (ENSODEG00000011582) #29 ENSODEG00000012736 ENSODEG00000011552 #30 VPS54 (ENSODEG00000012541) #31 PELI1 (ENSODEG00000011189) #32 ENSODEG00000011901 LGALSL (ENSODEG00000011485) #33 ENSODEG00000011805 #35 Guinea pig MODERN SPECIES 48 VRK2 (ENSCPOG00000015550) FANCL (ENSCPOG00000015552) ENSCPOG00000032549 BCL11A (ENSCPOG00000007587) #7 PAPOLG (ENSCPOG00000010306) #8 REL (ENSCPOG00000011659) #10 PUS10 (ENSCPOG00000011670) #11 PEX13 (ENSCPOG00000034678) #12 SANBR (ENSCPOG00000004783) #13 ENSCPOG00000004791 #15 USP34 (ENSCPOG00000004796) #16 XPO1 (ENSCPOG00000034053) #17 FAM161A (ENSCPOG00000002085) #18 CCT4 (ENSCPOG00000002086) #19 COMMD1 (ENSCPOG00000002088) #21 B3GNT2 (ENSCPOG00000034379) #22 TMEM17 (ENSCPOG00000035038) #24 EHBP1 (ENSCPOG00000002001) #25 OTX1 (ENSCPOG00000004881) #26 ENSCPOG00000030520 #27 ENSCPOG00000036317 #27 MDH1 (ENSCPOG00000010755) #29 UGP2 (ENSCPOG00000008459) #30 VPS54 (ENSCPOG00000037738) #31 PELI1 (ENSCPOG00000037199) #32 LGALSL (ENSCPOG00000039657) #33 ENSCPOG00000033401 #35 SLC1A4 (ENSCPOG00000008754) CEP68 (ENSCPOG00000001592) RAB1A (ENSCPOG00000015437) ACTR2 (ENSCPOG00000025808) Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 23 PEX13 (ENSHGLG00000042744) #12 ENSHGLG00000046720 ENSHGLG00000047849 ENSHGLG00000046080 SANBR (ENSHGLG00000013196) #13 ENSHGLG00000019155 #14 ENSHGLG00000019027 #15 USP34 (ENSHGLG00000003393) #16 ENSHGLG00000019983 XPO1 (ENSHGLG00000003115) #17 FAM161A (ENSHGLG00000003066) #18 ENSHGLG00000033740 ENSHGLG00000002885 #19 ENSHGLG00000046505 ENSHGLG00000035774 #21 ENSHGLG00000008287 #22 TMEM17 (ENSHGLG00000007663) #24 EHBP1 (ENSHGLG00000007334) #25 OTX1 (ENSHGLG00000007005) #26 ENSHGLG00000039651 WDPCP (ENSHGLG00000005902) #27 ENSHGLG00000034790 MDH1 (ENSHGLG00000033109) #29 UGP2 (ENSHGLG00000005211) #30 VPS54 (ENSHGLG00000004813) #31 ENSHGLG00000033380 PELI1 (ENSHGLG00000033688) #32 ENSHGLG00000035846 #33 ENSHGLG00000004286 #35 ENSHGLG00000004348 #34 ENSHGLG00000047996 #36 Naked mole-rat female MODERN SPECIES 8 GALNT6 (ENSHGLG00000015114) ENSHGLG00000015575 CELA1 (ENSHGLG00000015740) BIN2 (ENSHGLG00000049230) ENSHGLG00000050761 DAZAP2 (ENSHGLG00000004225) POU6F1 (ENSHGLG00000006104) TFCP2 (ENSHGLG00000006837) CSRNP2 (ENSHGLG00000038318) LETMD1 (ENSHGLG00000035309) HIGD1C (ENSHGLG00000010374) SLC11A2 (ENSHGLG00000015898) ENSHGLG00000015984 METTL7A (ENSHGLG00000007624) ENSHGLG00000033537 ENSHGLG00000003982 #22 ATF1 (ENSHGLG00000044800) ENSHGLG00000035234 DIP2B (ENSHGLG00000006842) ENSHGLG00000005513 ENSHGLG00000041442 ENSHGLG00000048426 CERS5 (ENSHGLG00000003946) ENSHGLG00000005048 GPD1 (ENSHGLG00000006106) ENSHGLG00000003935 SMARCD1 (ENSHGLG00000003601) Asic1 (ENSHGLG00000004300) RACGAP1 (ENSHGLG00000005812) AQP6 (ENSHGLG00000003440) ENSHGLG00000044398 Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000018174 ENSHGLG00000034808 ENSHGLG00000050814 ENSHGLG00000019168 ENSHGLG00000043397 ENSHGLG00000037642 RAB33A (ENSHGLG00000018536) AIFM1 (ENSHGLG00000018635) ELF4 (ENSHGLG00000038769) BCORL1 (ENSHGLG00000003484) ENSHGLG00000020156 ENSHGLG00000002939 ZDHHC9 (ENSHGLG00000037667) SASH3 (ENSHGLG00000041053) XPNPEP2 (ENSHGLG00000002423) ENSHGLG00000006742 #22 ENSHGLG00000048466 ENSHGLG00000005330 ENSHGLG00000050554 ENSHGLG00000048190 ENSHGLG00000019483 ENSHGLG00000050991 FAM199X (ENSHGLG00000012070) ENSHGLG00000043015 IL1RAPL2 (ENSHGLG00000001940) ENSHGLG00000038168 NRK (ENSHGLG00000050327) SERPINA7 (ENSHGLG00000043412) PWWP3B (ENSHGLG00000040535) ENSHGLG00000049124 ENSHGLG00000003803 Naked mole-rat female MODERN SPECIES 14 ENSHGLG00000033828 ENSHGLG00000049770 ENSHGLG00000035645 ENSHGLG00000040164 ENSHGLG00000018022 ENSHGLG00000033577 ENSHGLG00000015997 ENSHGLG00000017228 ENSHGLG00000037111 ENSHGLG00000021048 ENSHGLG00000045903 #22 ENSHGLG00000021044 ENSHGLG00000048730 ENSHGLG00000037395 ENSHGLG00000021239 PRIM2 (ENSHGLG00000017861) ENSHGLG00000045680 ENSHGLG00000033625 RAB23 (ENSHGLG00000013030) ENSHGLG00000018722 ZNF451 (ENSHGLG00000018721) ENSHGLG00000044728 ENSHGLG00000016807 ENSHGLG00000015021 ENSHGLG00000042791 ENSHGLG00000049299 Sciuridae ANCESTRAL SPECIES 16 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00390000001858 #34 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Marmotini ANCESTRAL SPECIES 14 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00800000125307 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00390000001858 #34 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Marmotini_b ANCESTRAL SPECIES 44 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000154451.s ENSGT00940000157824 #18 ENSGT00550000074956 #19 ENSGT00390000012029.m #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00390000001858 #34 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 Arctic ground squirrel MODERN SPECIES 47 PAPOLG (ENSUPAG00010011631) #8 REL (ENSUPAG00010011621) #10 PUS10 (ENSUPAG00010011569) #11 PEX13 (ENSUPAG00010011557) #12 SANBR (ENSUPAG00010011475) #13 C2orf74 (ENSUPAG00010011464) #14 ENSUPAG00010011445 #15 USP34 (ENSUPAG00010011360) #16 XPO1 (ENSUPAG00010011307) #17 ENSUPAG00010011301 FAM161A (ENSUPAG00010011296) #18 CCT4 (ENSUPAG00010011275) #19 ENSUPAG00010011263 #21 B3GNT2 (ENSUPAG00010011255) #22 TMEM17 (ENSUPAG00010011243) #24 EHBP1 (ENSUPAG00010011097) #25 OTX1 (ENSUPAG00010011094) #26 WDPCP (ENSUPAG00010011061) #27 MDH1 (ENSUPAG00010011052) #29 UGP2 (ENSUPAG00010011000) #30 VPS54 (ENSUPAG00010010962) #31 PELI1 (ENSUPAG00010010945) #32 LGALSL (ENSUPAG00010010929) #33 AFTPH (ENSUPAG00010010843) #35 SERTAD2 (ENSUPAG00010010839) #36 ENSUPAG00010010837 SLC1A4 (ENSUPAG00010010829) CEP68 (ENSUPAG00010010822) RAB1A (ENSUPAG00010010773) Squirrel MODERN SPECIES 91 PAPOLG (ENSSTOG00000010861) #8 REL (ENSSTOG00000005785) #10 PUS10 (ENSSTOG00000005814) #11 PEX13 (ENSSTOG00000005864) #12 SANBR (ENSSTOG00000005893) #13 ENSSTOG00000029668 C2orf74 (ENSSTOG00000026908) #14 ENSSTOG00000007718 #15 USP34 (ENSSTOG00000007744) #16 ENSSTOG00000020670 XPO1 (ENSSTOG00000016122) #17 ENSSTOG00000028618 FAM161A (ENSSTOG00000026146) #18 CCT4 (ENSSTOG00000014911) #19 COMMD1 (ENSSTOG00000015062) #21 B3GNT2 (ENSSTOG00000015068) #22 TMEM17 (ENSSTOG00000009462) #24 EHBP1 (ENSSTOG00000020225) #25 OTX1 (ENSSTOG00000025219) #26 WDPCP (ENSSTOG00000014213) #27 MDH1 (ENSSTOG00000014227) #29 ENSSTOG00000023912 UGP2 (ENSSTOG00000000789) #30 VPS54 (ENSSTOG00000023517) #31 PELI1 (ENSSTOG00000026315) #32 LGALSL (ENSSTOG00000024204) #33 AFTPH (ENSSTOG00000020828) #35 ENSSTOG00000030042 #34 SERTAD2 (ENSSTOG00000008454) #36 SLC1A4 (ENSSTOG00000025160) CEP68 (ENSSTOG00000011479) Alpin marmot MODERN SPECIES 6 ENSMMMG00000007079 PAPOLG (ENSMMMG00000007034) #8 REL (ENSMMMG00000007001) #10 ENSMMMG00000006930 #11 PEX13 (ENSMMMG00000006925) #12 SANBR (ENSMMMG00000006843) #13 ENSMMMG00000006840 C2orf74 (ENSMMMG00000006827) #14 ENSMMMG00000006820 #15 USP34 (ENSMMMG00000006722) #16 XPO1 (ENSMMMG00000006603) #17 ENSMMMG00000006598 ENSMMMG00000006583 #18 CCT4 (ENSMMMG00000006543) #19 ENSMMMG00000006529 #21 B3GNT2 (ENSMMMG00000006495) #22 TMEM17 (ENSMMMG00000006473) #24 EHBP1 (ENSMMMG00000006363) #25 OTX1 (ENSMMMG00000006353) #26 WDPCP (ENSMMMG00000006330) #27 MDH1 (ENSMMMG00000006303) #29 ENSMMMG00000006286 UGP2 (ENSMMMG00000006263) #30 VPS54 (ENSMMMG00000006188) #31 PELI1 (ENSMMMG00000006175) #32 LGALSL (ENSMMMG00000006152) #33 AFTPH (ENSMMMG00000006097) #35 ENSMMMG00000006048 ENSMMMG00000006042 SLC1A4 (ENSMMMG00000006026) CEP68 (ENSMMMG00000005980) Eurasian red squirrel MODERN SPECIES 5 ENSSVLG00005023730 C2orf74 (ENSSVLG00005023693) #14 ENSSVLG00005023655 #15 ENSSVLG00005023624 ENSSVLG00005023593 #15 USP34 (ENSSVLG00005023531) #16 XPO1 (ENSSVLG00005023207) #17 ENSSVLG00005023491 #17 ENSSVLG00005023117 ENSSVLG00005023092 FAM161A (ENSSVLG00005023008) #18 CCT4 (ENSSVLG00005022942) #19 CRIPT (ENSSVLG00005022896) ENSSVLG00005022859 #21 ENSSVLG00005022821 B3GNT2 (ENSSVLG00005022804) #22 TMEM17 (ENSSVLG00005022771) #24 EHBP1 (ENSSVLG00005022645) #25 OTX1 (ENSSVLG00005022587) #26 WDPCP (ENSSVLG00005022261) #27 MDH1 (ENSSVLG00005022103) #29 UGP2 (ENSSVLG00005021917) #30 VPS54 (ENSSVLG00005021631) #31 PELI1 (ENSSVLG00005021561) #32 LGALSL (ENSSVLG00005021478) #33 ENSSVLG00005021416 #35 SERTAD2 (ENSSVLG00005021387) #36 SLC1A4 (ENSSVLG00005021330) ENSSVLG00005021277 ENSSVLG00005021243 ENSSVLG00005021194 Lagomorpha ANCESTRAL SPECIES 10 ENSGT00940000158042 ENSGT00390000005537 ENSGT00940000156983.a.a #7 ENSGT00940000156467 #8 ENSGT00940000158732 #10 ENSGT00390000007529 #11 ENSGT00390000016883 #12 ENSGT00390000008178 #13 ENSGT00390000004911 #14 ENSGT00940000157344 #15 ENSGT00940000158659 #16 ENSGT00940000153408.B #17 ENSGT00940000157824.c #18 ENSGT00550000074956 #19 ENSGT00390000012029 #21 ENSGT00940000155345 #22 ENSGT00940000153899.b.b #24 ENSGT00940000157597 #25 ENSGT00940000161234 #26 ENSGT00390000016551 #27 ENSGT00530000063410.a #29 ENSGT00940000153464.B #30 ENSGT00390000000583 #31 ENSGT00950000183050.b.b.a #32 ENSGT00940000155337 #33 ENSGT00940000154186.a #35 ENSGT00530000063867.b #36 ENSGT00940000157081 ENSGT00810000125473.A ENSGT00940000154958 ENSGT00940000154556.lb.a Rabbit MODERN SPECIES 11 VRK2 (ENSOCUG00000007388) FANCL (ENSOCUG00000005105) BCL11A (ENSOCUG00000023948) #7 PAPOLG (ENSOCUG00000004962) #8 REL (ENSOCUG00000004968) #10 PUS10 (ENSOCUG00000007867) #11 PEX13 (ENSOCUG00000007894) #12 SANBR (ENSOCUG00000009559) #13 C2orf74 (ENSOCUG00000029395) #14 ENSOCUG00000017817 #15 USP34 (ENSOCUG00000017819) #16 XPO1 (ENSOCUG00000004986) #17 ENSOCUG00000000707 #18 CCT4 (ENSOCUG00000024386) #19 COMMD1 (ENSOCUG00000001093) #21 B3GNT2 (ENSOCUG00000017281) #22 TMEM17 (ENSOCUG00000010487) #24 ENSOCUG00000037865 EHBP1 (ENSOCUG00000013563) #25 OTX1 (ENSOCUG00000021773) #26 WDPCP (ENSOCUG00000006156) #27 MDH1 (ENSOCUG00000006166) #29 ENSOCUG00000002137 #30 VPS54 (ENSOCUG00000002143) #31 PELI1 (ENSOCUG00000027961) #32 ENSOCUG00000031191 LGALSL (ENSOCUG00000013957) #33 AFTPH (ENSOCUG00000006390) #35 SERTAD2 (ENSOCUG00000008192) #36 ENSOCUG00000010821 CEP68 (ENSOCUG00000016996) Pika MODERN SPECIES 410 CCT4 (ENSOPRG00000013918) #19 COMMD1 (ENSOPRG00000013939) #21 B3GNT2 (ENSOPRG00000013946) #22 TMEM17 (ENSOPRG00000013953) #24