Rodentia_A	ANCESTRAL SPECIES	14	ENSGT00390000005537 #9	ENSGT00940000156983.a.a #10	ENSGT00800000125307	ENSGT00940000156467 #11	ENSGT00940000158732 #12	ENSGT00390000007529 #13	ENSGT00390000016883 #14	ENSGT00390000008178 #15	ENSGT00390000004911	ENSGT00940000157344 #16	ENSGT00940000158659 #17	ENSGT00940000153408.B #18	ENSGT00940000157824 #19	ENSGT00550000074956 #20	ENSGT00390000012029 #21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #28	ENSGT00390000000583 #29	ENSGT00950000183050.b.b.a #30	ENSGT00940000155337 #31	ENSGT00940000154186.a #33	ENSGT00390000001858 #32	ENSGT00530000063867.b #34	ENSGT00940000157081 #35	ENSGT00810000125473.A #36	ENSGT00940000154958 #37
Hystricomorpha	ANCESTRAL SPECIES	8	ENSGT00940000158042 #8	ENSGT00390000005537 #9	ENSGT00940000156983.a.a #10	ENSGT00940000156467 #11	ENSGT00940000158732 #12	ENSGT00390000007529 #13	ENSGT00390000016883 #14	ENSGT00390000008178 #15	ENSGT00390000004911	ENSGT00940000157344 #16	ENSGT00940000158659 #17	ENSGT00940000153408.B #18	ENSGT00940000157824 #19	ENSGT00550000074956 #20	ENSGT00390000012029 #21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #28	ENSGT00390000000583 #29	ENSGT00950000183050.b.b.a #30	ENSGT00940000155337 #31	ENSGT00940000154186.a #33	ENSGT00390000001858 #32	ENSGT00530000063867.b #34	ENSGT00940000157081 #35	ENSGT00810000125473.A.f #36	ENSGT00940000154958 #37
Hystricomorpha_a	ANCESTRAL SPECIES	35	ENSGT00940000157361 #7	ENSGT00940000158042 #8	ENSGT00390000005537 #9	ENSGT00940000156983.a.a #10	ENSGT00940000156467 #11	ENSGT00940000158732 #12	ENSGT00390000007529 #13	ENSGT00390000016883 #14	ENSGT00390000008178 #15	ENSGT00940000157344 #16	ENSGT00940000158659 #17	ENSGT00940000153408.B #18	ENSGT00940000157824 #19	ENSGT00550000074956 #20	ENSGT00390000012029 #21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #28	ENSGT00390000000583 #29	ENSGT00950000183050.b.b.a #30	ENSGT00940000155337 #31	ENSGT00390000001858 #32	ENSGT00940000154186.a #33	ENSGT00530000063867.b #34	ENSGT00940000157081 #35	ENSGT00810000125473.A.f #36	ENSGT00940000154958 #37
Hystricomorpha_b	ANCESTRAL SPECIES	33	ENSGT00940000157361 #7	ENSGT00940000158042 #8	ENSGT00390000005537 #9	ENSGT00940000156983.a.a #10	ENSGT00940000156467 #11	ENSGT00940000158732 #12	ENSGT00390000007529 #13	ENSGT00390000016883 #14	ENSGT00390000008178.g #15	ENSGT00940000157344 #16	ENSGT00940000158659 #17	ENSGT00940000153408.B #18	ENSGT00940000157824 #19	ENSGT00550000074956 #20	ENSGT00390000012029 #21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #28	ENSGT00390000000583 #29	ENSGT00950000183050.b.b.a #30	ENSGT00940000155337 #31	ENSGT00390000001858 #32	ENSGT00940000154186.a #33	ENSGT00530000063867.b #34	ENSGT00940000157081 #35	ENSGT00810000125473.A.f #36	ENSGT00940000154958.y #37
Long-tailed chinchilla	MODERN SPECIES	131	CCDC85A (ENSCLAG00000015417) #7	VRK2 (ENSCLAG00000016561) #8	FANCL (ENSCLAG00000011359) #9	BCL11A (ENSCLAG00000009184) #10	PAPOLG (ENSCLAG00000008603) #11	REL (ENSCLAG00000007490) #12	PUS10 (ENSCLAG00000011001) #13	PEX13 (ENSCLAG00000015482) #14	SANBR (ENSCLAG00000009068) #15	ENSCLAG00000007857 #16	USP34 (ENSCLAG00000010299) #17	XPO1 (ENSCLAG00000012953) #18	FAM161A (ENSCLAG00000011652) #19	CCT4 (ENSCLAG00000014321) #20	COMMD1 (ENSCLAG00000013262) #21	B3GNT2 (ENSCLAG00000013147) #22	TMEM17 (ENSCLAG00000013487) #23	EHBP1 (ENSCLAG00000007561) #24	OTX1 (ENSCLAG00000010265) #25	ENSCLAG00000008400 #26	MDH1 (ENSCLAG00000007815) #27	UGP2 (ENSCLAG00000010416) #28	VPS54 (ENSCLAG00000007366) #29	PELI1 (ENSCLAG00000006481) #30	LGALSL (ENSCLAG00000015114) #31	ENSCLAG00000012344 #32	AFTPH (ENSCLAG00000012032) #33	SERTAD2 (ENSCLAG00000008318) #34	SLC1A4 (ENSCLAG00000008207) #35	CEP68 (ENSCLAG00000012193) #36	RAB1A (ENSCLAG00000014766) #37
Degu	MODERN SPECIES	119	ENSODEG00000012174	PAPOLG (ENSODEG00000012424) #11	REL (ENSODEG00000013430) #12	PUS10 (ENSODEG00000011720) #13	ENSODEG00000012067 #15	ENSODEG00000011830 #16	USP34 (ENSODEG00000011790) #17	ENSODEG00000020015	XPO1 (ENSODEG00000012632) #18	ENSODEG00000011466	ENSODEG00000011239	ENSODEG00000012087	ENSODEG00000012263	ENSODEG00000011618 #20	ENSODEG00000011341	B3GNT2 (ENSODEG00000011165) #22	ENSODEG00000011529 #23	EHBP1 (ENSODEG00000012259) #24	OTX1 (ENSODEG00000012071) #25	ENSODEG00000011160	ENSODEG00000011103	ENSODEG00000019821	WDPCP (ENSODEG00000011330) #26	MDH1 (ENSODEG00000011582) #27	ENSODEG00000012736	ENSODEG00000011552 #28	VPS54 (ENSODEG00000012541) #29	PELI1 (ENSODEG00000011189) #30	ENSODEG00000011901	LGALSL (ENSODEG00000011485) #31	ENSODEG00000011805 #33
Guinea pig	MODERN SPECIES	48	VRK2 (ENSCPOG00000015550) #8	FANCL (ENSCPOG00000015552) #9	ENSCPOG00000032549	BCL11A (ENSCPOG00000007587) #10	PAPOLG (ENSCPOG00000010306) #11	REL (ENSCPOG00000011659) #12	PUS10 (ENSCPOG00000011670) #13	PEX13 (ENSCPOG00000034678) #14	SANBR (ENSCPOG00000004783) #15	ENSCPOG00000004791 #16	USP34 (ENSCPOG00000004796) #17	XPO1 (ENSCPOG00000034053) #18	FAM161A (ENSCPOG00000002085) #19	CCT4 (ENSCPOG00000002086) #20	COMMD1 (ENSCPOG00000002088) #21	B3GNT2 (ENSCPOG00000034379) #22	TMEM17 (ENSCPOG00000035038) #23	EHBP1 (ENSCPOG00000002001) #24	OTX1 (ENSCPOG00000004881) #25	ENSCPOG00000030520 #26	ENSCPOG00000036317 #26	MDH1 (ENSCPOG00000010755) #27	UGP2 (ENSCPOG00000008459) #28	VPS54 (ENSCPOG00000037738) #29	PELI1 (ENSCPOG00000037199) #30	LGALSL (ENSCPOG00000039657) #31	ENSCPOG00000033401 #33	SLC1A4 (ENSCPOG00000008754) #35	CEP68 (ENSCPOG00000001592) #36	RAB1A (ENSCPOG00000015437) #37	ACTR2 (ENSCPOG00000025808)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	23	PEX13 (ENSHGLG00000042744) #14	ENSHGLG00000046720	ENSHGLG00000047849	ENSHGLG00000046080	SANBR (ENSHGLG00000013196) #15	ENSHGLG00000019155	ENSHGLG00000019027 #16	USP34 (ENSHGLG00000003393) #17	ENSHGLG00000019983	XPO1 (ENSHGLG00000003115) #18	FAM161A (ENSHGLG00000003066) #19	ENSHGLG00000033740	ENSHGLG00000002885 #20	ENSHGLG00000046505	ENSHGLG00000035774 #21	ENSHGLG00000008287 #22	TMEM17 (ENSHGLG00000007663) #23	EHBP1 (ENSHGLG00000007334) #24	OTX1 (ENSHGLG00000007005) #25	ENSHGLG00000039651	WDPCP (ENSHGLG00000005902) #26	ENSHGLG00000034790	MDH1 (ENSHGLG00000033109) #27	UGP2 (ENSHGLG00000005211) #28	VPS54 (ENSHGLG00000004813) #29	ENSHGLG00000033380	PELI1 (ENSHGLG00000033688) #30	ENSHGLG00000035846 #31	ENSHGLG00000004286 #33	ENSHGLG00000004348 #32	ENSHGLG00000047996 #34
Naked mole-rat female	MODERN SPECIES	8	GALNT6 (ENSHGLG00000015114)	ENSHGLG00000015575	CELA1 (ENSHGLG00000015740)	BIN2 (ENSHGLG00000049230)	ENSHGLG00000050761	DAZAP2 (ENSHGLG00000004225)	POU6F1 (ENSHGLG00000006104)	TFCP2 (ENSHGLG00000006837)	CSRNP2 (ENSHGLG00000038318)	LETMD1 (ENSHGLG00000035309)	HIGD1C (ENSHGLG00000010374)	SLC11A2 (ENSHGLG00000015898)	ENSHGLG00000015984	METTL7A (ENSHGLG00000007624)	ENSHGLG00000033537	ENSHGLG00000003982 #22	ATF1 (ENSHGLG00000044800)	ENSHGLG00000035234	DIP2B (ENSHGLG00000006842)	ENSHGLG00000005513	ENSHGLG00000041442	ENSHGLG00000048426	CERS5 (ENSHGLG00000003946)	ENSHGLG00000005048	GPD1 (ENSHGLG00000006106)	ENSHGLG00000003935	SMARCD1 (ENSHGLG00000003601)	Asic1 (ENSHGLG00000004300)	RACGAP1 (ENSHGLG00000005812)	AQP6 (ENSHGLG00000003440)	ENSHGLG00000044398
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000018174	ENSHGLG00000034808	ENSHGLG00000050814	ENSHGLG00000019168	ENSHGLG00000043397	ENSHGLG00000037642	RAB33A (ENSHGLG00000018536)	AIFM1 (ENSHGLG00000018635)	ELF4 (ENSHGLG00000038769)	BCORL1 (ENSHGLG00000003484)	ENSHGLG00000020156	ENSHGLG00000002939	ZDHHC9 (ENSHGLG00000037667)	SASH3 (ENSHGLG00000041053)	XPNPEP2 (ENSHGLG00000002423)	ENSHGLG00000006742 #22	ENSHGLG00000048466	ENSHGLG00000005330	ENSHGLG00000050554	ENSHGLG00000048190	ENSHGLG00000019483	ENSHGLG00000050991	FAM199X (ENSHGLG00000012070)	ENSHGLG00000043015	IL1RAPL2 (ENSHGLG00000001940)	ENSHGLG00000038168	NRK (ENSHGLG00000050327)	SERPINA7 (ENSHGLG00000043412)	PWWP3B (ENSHGLG00000040535)	ENSHGLG00000049124	ENSHGLG00000003803
Naked mole-rat female	MODERN SPECIES	14						ENSHGLG00000033828	ENSHGLG00000049770	ENSHGLG00000035645	ENSHGLG00000040164	ENSHGLG00000018022	ENSHGLG00000033577	ENSHGLG00000015997	ENSHGLG00000017228	ENSHGLG00000037111	ENSHGLG00000021048	ENSHGLG00000045903 #22	ENSHGLG00000021044	ENSHGLG00000048730	ENSHGLG00000037395	ENSHGLG00000021239	PRIM2 (ENSHGLG00000017861)	ENSHGLG00000045680	ENSHGLG00000033625	RAB23 (ENSHGLG00000013030)	ENSHGLG00000018722	ZNF451 (ENSHGLG00000018721)	ENSHGLG00000044728	ENSHGLG00000016807	ENSHGLG00000015021	ENSHGLG00000042791	ENSHGLG00000049299
Sciuridae	ANCESTRAL SPECIES	16	ENSGT00390000005537 #9	ENSGT00940000156983.a.a #10	ENSGT00800000125307	ENSGT00940000156467 #11	ENSGT00940000158732 #12	ENSGT00390000007529 #13	ENSGT00390000016883 #14	ENSGT00390000008178 #15	ENSGT00390000004911	ENSGT00940000157344 #16	ENSGT00940000158659 #17	ENSGT00940000153408.B #18	ENSGT00940000157824 #19	ENSGT00550000074956 #20	ENSGT00390000012029 #21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #28	ENSGT00390000000583 #29	ENSGT00950000183050.b.b.a #30	ENSGT00940000155337 #31	ENSGT00940000154186.a #33	ENSGT00390000001858 #32	ENSGT00530000063867.b #34	ENSGT00940000157081 #35	ENSGT00810000125473.A #36	ENSGT00940000154958 #37
Marmotini	ANCESTRAL SPECIES	14	ENSGT00390000005537 #9	ENSGT00940000156983.a.a #10	ENSGT00800000125307	ENSGT00940000156467 #11	ENSGT00940000158732 #12	ENSGT00390000007529 #13	ENSGT00390000016883 #14	ENSGT00390000008178 #15	ENSGT00390000004911	ENSGT00940000157344 #16	ENSGT00940000158659 #17	ENSGT00940000153408.B #18	ENSGT00940000157824 #19	ENSGT00550000074956 #20	ENSGT00390000012029 #21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #28	ENSGT00390000000583 #29	ENSGT00950000183050.b.b.a #30	ENSGT00940000155337 #31	ENSGT00940000154186.a #33	ENSGT00390000001858 #32	ENSGT00530000063867.b #34	ENSGT00940000157081 #35	ENSGT00810000125473.A #36	ENSGT00940000154958 #37
Marmotini_b	ANCESTRAL SPECIES	44	ENSGT00390000005537 #9	ENSGT00940000156983.a.a #10	ENSGT00940000156467 #11	ENSGT00940000158732 #12	ENSGT00390000007529 #13	ENSGT00390000016883 #14	ENSGT00390000008178 #15	ENSGT00390000004911	ENSGT00940000157344 #16	ENSGT00940000158659 #17	ENSGT00940000153408.B #18	ENSGT00940000154451.s	ENSGT00940000157824 #19	ENSGT00550000074956 #20	ENSGT00390000012029.m #21	ENSGT00940000155345 #22	ENSGT00940000153899.b.b #23	ENSGT00940000157597 #24	ENSGT00940000161234 #25	ENSGT00390000016551 #26	ENSGT00530000063410.a #27	ENSGT00940000153464.B #28	ENSGT00390000000583 #29	ENSGT00950000183050.b.b.a #30	ENSGT00940000155337 #31	ENSGT00940000154186.a #33	ENSGT00390000001858 #32	ENSGT00530000063867.b #34	ENSGT00940000157081 #35	ENSGT00810000125473.A #36	ENSGT00940000154958 #37
Arctic ground squirrel	MODERN SPECIES	47			PAPOLG (ENSUPAG00010011631) #11	REL (ENSUPAG00010011621) #12	PUS10 (ENSUPAG00010011569) #13	PEX13 (ENSUPAG00010011557) #14	SANBR (ENSUPAG00010011475) #15	C2orf74 (ENSUPAG00010011464)	ENSUPAG00010011445 #16	USP34 (ENSUPAG00010011360) #17	XPO1 (ENSUPAG00010011307) #18	ENSUPAG00010011301	FAM161A (ENSUPAG00010011296) #19	CCT4 (ENSUPAG00010011275) #20	ENSUPAG00010011263 #21	B3GNT2 (ENSUPAG00010011255) #22	TMEM17 (ENSUPAG00010011243) #23	EHBP1 (ENSUPAG00010011097) #24	OTX1 (ENSUPAG00010011094) #25	WDPCP (ENSUPAG00010011061) #26	MDH1 (ENSUPAG00010011052) #27	UGP2 (ENSUPAG00010011000) #28	VPS54 (ENSUPAG00010010962) #29	PELI1 (ENSUPAG00010010945) #30	LGALSL (ENSUPAG00010010929) #31	AFTPH (ENSUPAG00010010843) #33	SERTAD2 (ENSUPAG00010010839) #34	ENSUPAG00010010837	SLC1A4 (ENSUPAG00010010829) #35	CEP68 (ENSUPAG00010010822) #36	RAB1A (ENSUPAG00010010773) #37
Squirrel	MODERN SPECIES	91	PAPOLG (ENSSTOG00000010861) #11	REL (ENSSTOG00000005785) #12	PUS10 (ENSSTOG00000005814) #13	PEX13 (ENSSTOG00000005864) #14	SANBR (ENSSTOG00000005893) #15	ENSSTOG00000029668	C2orf74 (ENSSTOG00000026908)	ENSSTOG00000007718 #16	USP34 (ENSSTOG00000007744) #17	ENSSTOG00000020670	XPO1 (ENSSTOG00000016122) #18	ENSSTOG00000028618	FAM161A (ENSSTOG00000026146) #19	CCT4 (ENSSTOG00000014911) #20	COMMD1 (ENSSTOG00000015062) #21	B3GNT2 (ENSSTOG00000015068) #22	TMEM17 (ENSSTOG00000009462) #23	EHBP1 (ENSSTOG00000020225) #24	OTX1 (ENSSTOG00000025219) #25	WDPCP (ENSSTOG00000014213) #26	MDH1 (ENSSTOG00000014227) #27	ENSSTOG00000023912	UGP2 (ENSSTOG00000000789) #28	VPS54 (ENSSTOG00000023517) #29	PELI1 (ENSSTOG00000026315) #30	LGALSL (ENSSTOG00000024204) #31	AFTPH (ENSSTOG00000020828) #33	ENSSTOG00000030042 #32	SERTAD2 (ENSSTOG00000008454) #34	SLC1A4 (ENSSTOG00000025160) #35	CEP68 (ENSSTOG00000011479) #36
Alpin marmot	MODERN SPECIES	6	ENSMMMG00000007079	PAPOLG (ENSMMMG00000007034) #11	REL (ENSMMMG00000007001) #12	ENSMMMG00000006930 #13	PEX13 (ENSMMMG00000006925) #14	SANBR (ENSMMMG00000006843) #15	ENSMMMG00000006840	C2orf74 (ENSMMMG00000006827)	ENSMMMG00000006820 #16	USP34 (ENSMMMG00000006722) #17	XPO1 (ENSMMMG00000006603) #18	ENSMMMG00000006598	ENSMMMG00000006583 #19	CCT4 (ENSMMMG00000006543) #20	ENSMMMG00000006529 #21	B3GNT2 (ENSMMMG00000006495) #22	TMEM17 (ENSMMMG00000006473) #23	EHBP1 (ENSMMMG00000006363) #24	OTX1 (ENSMMMG00000006353) #25	WDPCP (ENSMMMG00000006330) #26	MDH1 (ENSMMMG00000006303) #27	ENSMMMG00000006286	UGP2 (ENSMMMG00000006263) #28	VPS54 (ENSMMMG00000006188) #29	PELI1 (ENSMMMG00000006175) #30	LGALSL (ENSMMMG00000006152) #31	AFTPH (ENSMMMG00000006097) #33	ENSMMMG00000006048	ENSMMMG00000006042	SLC1A4 (ENSMMMG00000006026) #35	CEP68 (ENSMMMG00000005980) #36
Eurasian red squirrel	MODERN SPECIES	5	ENSSVLG00005023730	C2orf74 (ENSSVLG00005023693)	ENSSVLG00005023655 #16	ENSSVLG00005023624	ENSSVLG00005023593 #16	USP34 (ENSSVLG00005023531) #17	XPO1 (ENSSVLG00005023207) #18	ENSSVLG00005023491 #18	ENSSVLG00005023117	ENSSVLG00005023092	FAM161A (ENSSVLG00005023008) #19	CCT4 (ENSSVLG00005022942) #20	CRIPT (ENSSVLG00005022896)	ENSSVLG00005022859 #21	ENSSVLG00005022821	B3GNT2 (ENSSVLG00005022804) #22	TMEM17 (ENSSVLG00005022771) #23	EHBP1 (ENSSVLG00005022645) #24	OTX1 (ENSSVLG00005022587) #25	WDPCP (ENSSVLG00005022261) #26	MDH1 (ENSSVLG00005022103) #27	UGP2 (ENSSVLG00005021917) #28	VPS54 (ENSSVLG00005021631) #29	PELI1 (ENSSVLG00005021561) #30	LGALSL (ENSSVLG00005021478) #31	ENSSVLG00005021416 #33	SERTAD2 (ENSSVLG00005021387) #34	SLC1A4 (ENSSVLG00005021330) #35	ENSSVLG00005021277	ENSSVLG00005021243	ENSSVLG00005021194