Rodentia_A	ANCESTRAL SPECIES	21	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B #7	ENSGT00510000049722 #8	ENSGT00940000161961 #9	ENSGT00940000158614 #10	ENSGT00940000158299 #11	ENSGT00940000157269.a.a #12	ENSGT00940000160868 #13	ENSGT01030000234597.a.b.a #14	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b #19	ENSGT00950000182864.a.b.a #20	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A #24	ENSGT00940000154314 #25	ENSGT00390000008225 #26	ENSGT00940000157734 #27	ENSGT00940000156208 #28	ENSGT00940000161685.A.a	ENSGT00940000161406 #31	ENSGT00900000141143 #32	ENSGT00940000156716 #33	ENSGT00390000005989.b #34	ENSGT00940000162737 #35	ENSGT00940000160930 #36	ENSGT00940000158607 #37	ENSGT00940000172945	ENSGT01100000263540.B.d
Hystricomorpha	ANCESTRAL SPECIES	21	ENSGT00940000158598	ENSGT00390000004380.p	ENSGT00940000158238	ENSGT00530000063668.B #7	ENSGT00510000049722 #8	ENSGT00940000161961 #9	ENSGT00940000158614 #10	ENSGT00940000158299 #11	ENSGT00940000157269.a.a #12	ENSGT00940000160868 #13	ENSGT01030000234597.a.b.a #14	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00390000013415.a.b #19	ENSGT00950000182864.a.b.a #20	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A #24	ENSGT00940000154314 #25	ENSGT00390000008225 #26	ENSGT00940000157734 #27	ENSGT00940000156208 #28	ENSGT00940000161685.A.a	ENSGT00940000161406 #31	ENSGT00900000141143 #32	ENSGT00940000156716 #33	ENSGT00390000005989.b #34	ENSGT00940000162737 #35	ENSGT00940000160930 #36	ENSGT00940000158607 #37	ENSGT00940000172945	ENSGT01100000263540.B.d
Hystricomorpha_a	ANCESTRAL SPECIES	20	ENSGT00940000158598	ENSGT00390000004380.p	ENSGT00940000158238	ENSGT00530000063668.B #7	ENSGT00510000049722 #8	ENSGT00940000161961 #9	ENSGT00940000158614 #10	ENSGT00940000158299 #11	ENSGT00940000157269.a.a #12	ENSGT00940000160868 #13	ENSGT01030000234597.a.b.a #14	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00390000013415.a.b #19	ENSGT00950000182864.a.b.a #20	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A #24	ENSGT00940000154314 #25	ENSGT00390000008225 #26	ENSGT00940000157734 #27	ENSGT00940000156208 #28	ENSGT00940000161685.A.a	ENSGT00940000161406 #31	ENSGT00900000141143 #32	ENSGT00940000156716 #33	ENSGT00390000005989.b #34	ENSGT00940000162737 #35	ENSGT00940000160930 #36	ENSGT00940000158607 #37	ENSGT01100000263540.B.d	ENSGT00940000155874
Hystricomorpha_b	ANCESTRAL SPECIES	30	ENSGT00940000158598	ENSGT00390000004380.p	ENSGT00940000158238	ENSGT00530000063668.B #7	ENSGT00510000049722 #8	ENSGT00940000161961 #9	ENSGT00940000158614 #10	ENSGT00940000158299 #11	ENSGT00940000157269.a.a #12	ENSGT00940000160868 #13	ENSGT01030000234597.a.b.a #14	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00390000013415.a.b #19	ENSGT00950000182864.a.b.a #20	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A #24	ENSGT00940000154314 #25	ENSGT00390000008225 #26	ENSGT00940000157734 #27	ENSGT00940000156208 #28	ENSGT00940000161685.A.a	ENSGT00940000161406 #31	ENSGT00900000141143 #32	ENSGT00940000156716 #33	ENSGT00390000005989.b #34	ENSGT00940000162737 #35	ENSGT00940000160930 #36	ENSGT00940000158607 #37	ENSGT01100000263540.B.d	ENSGT00940000155874
Degu	MODERN SPECIES	77	CLU (ENSODEG00000007758) #7	ENSODEG00000012794 #8	ADAM2 (ENSODEG00000008302) #9	EPHX2 (ENSODEG00000007405) #10	CHRNA2 (ENSODEG00000008004) #11	PTK2B (ENSODEG00000009950) #12	TRIM35 (ENSODEG00000008434) #13	STMN4 (ENSODEG00000006658) #14	ENSODEG00000010902 #15	ADRA1A (ENSODEG00000007554) #16	DPYSL2 (ENSODEG00000007667) #17	ENSODEG00000007526 #18	ENSODEG00000007362 #19	ENSODEG00000006781 #20	ENSODEG00000007854 #21	EBF2 (ENSODEG00000007640) #22	ENSODEG00000006905 #23	ENSODEG00000007418 #24	KCTD9 (ENSODEG00000008616) #25	GNRH1 (ENSODEG00000007834) #26	DOCK5 (ENSODEG00000007523) #27	NEFL (ENSODEG00000007183) #28	NEFM (ENSODEG00000008392) #29	ENSODEG00000007521 #30	ADAM7 (ENSODEG00000007547) #31	ADAMDEC1 (ENSODEG00000008034) #32	ADAM28 (ENSODEG00000007875) #33	STC1 (ENSODEG00000007382) #34	NKX2-6 (ENSODEG00000007413) #35	NKX3-1 (ENSODEG00000007004) #36	SLC25A37 (ENSODEG00000007363) #37
Long-tailed chinchilla	MODERN SPECIES	110	ESCO2 (ENSCLAG00000017015)	CCDC25 (ENSCLAG00000013927)	SCARA3 (ENSCLAG00000016246)	CLU (ENSCLAG00000014457) #7	ENSCLAG00000014336 #8	ADAM2 (ENSCLAG00000014916) #9	EPHX2 (ENSCLAG00000014569) #10	CHRNA2 (ENSCLAG00000016813) #11	PTK2B (ENSCLAG00000015285) #12	TRIM35 (ENSCLAG00000014327) #13	STMN4 (ENSCLAG00000014584) #14	ADRA1A (ENSCLAG00000014689) #16	DPYSL2 (ENSCLAG00000015960) #17	BNIP3L (ENSCLAG00000016223) #19	PPP2R2A (ENSCLAG00000013984) #20	EBF2 (ENSCLAG00000013500) #22	CDCA2 (ENSCLAG00000011981) #24	KCTD9 (ENSCLAG00000013948) #25	GNRH1 (ENSCLAG00000014234) #26	DOCK5 (ENSCLAG00000015174) #27	NEFL (ENSCLAG00000014935) #28	ENSCLAG00000013799	ADAM7 (ENSCLAG00000013174) #31	ENSCLAG00000015375 #32	ADAM28 (ENSCLAG00000016310) #33	ENSCLAG00000015807	STC1 (ENSCLAG00000014786) #34	NKX2-6 (ENSCLAG00000014720) #35	NKX3-1 (ENSCLAG00000013957) #36	SLC25A37 (ENSCLAG00000014235) #37	ENTPD4 (ENSCLAG00000013899)
Guinea pig	MODERN SPECIES	1	PBK (ENSCPOG00000010826)	ESCO2 (ENSCPOG00000024189)	CCDC25 (ENSCPOG00000038303)	SCARA3 (ENSCPOG00000034540)	CLU (ENSCPOG00000019546) #7	ADAM2 (ENSCPOG00000022133) #9	EPHX2 (ENSCPOG00000037609) #10	CHRNA2 (ENSCPOG00000038123) #11	PTK2B (ENSCPOG00000004602) #12	TRIM35 (ENSCPOG00000032287) #13	STMN4 (ENSCPOG00000005528) #14	ADRA1A (ENSCPOG00000038399) #16	DPYSL2 (ENSCPOG00000025679) #17	BNIP3L (ENSCPOG00000034680) #19	PPP2R2A (ENSCPOG00000026784) #20	EBF2 (ENSCPOG00000001463) #22	CDCA2 (ENSCPOG00000036890) #24	KCTD9 (ENSCPOG00000015540) #25	GNRH1 (ENSCPOG00000015538) #26	DOCK5 (ENSCPOG00000015533) #27	NEFL (ENSCPOG00000023838) #28	ENSCPOG00000027410	ADAM7 (ENSCPOG00000001538) #31	ADAMDEC1 (ENSCPOG00000038140) #32	ADAM28 (ENSCPOG00000009707) #33	STC1 (ENSCPOG00000034351) #34	NKX3-1 (ENSCPOG00000040229) #36	SLC25A37 (ENSCPOG00000035237) #37	ENTPD4 (ENSCPOG00000009705)	LOXL2 (ENSCPOG00000009701)	R3HCC1 (ENSCPOG00000009696)
Naked mole-rat female	MODERN SPECIES	25	EPHX2 (ENSHGLG00000005581) #10	CHRNA2 (ENSHGLG00000004833) #11	PTK2B (ENSHGLG00000015272) #12	TRIM35 (ENSHGLG00000034100) #13	STMN4 (ENSHGLG00000016773) #14	ENSHGLG00000045878	ADRA1A (ENSHGLG00000009186) #16	ENSHGLG00000048177	ENSHGLG00000046165	DPYSL2 (ENSHGLG00000005797) #17	PNMA2 (ENSHGLG00000045190)	ENSHGLG00000044794	BNIP3L (ENSHGLG00000041171) #19	ENSHGLG00000009150 #20	ENSHGLG00000045544	ENSHGLG00000004897 #22	ENSHGLG00000010256	CDCA2 (ENSHGLG00000037894) #24	ENSHGLG00000036572	ENSHGLG00000018824 #25	GNRH1 (ENSHGLG00000017902) #26	DOCK5 (ENSHGLG00000017514) #27	ENSHGLG00000050046	NEFL (ENSHGLG00000017653) #28	ENSHGLG00000019352	ENSHGLG00000036278	ADAM7 (ENSHGLG00000017673) #31	ADAMDEC1 (ENSHGLG00000011872) #32	ADAM28 (ENSHGLG00000018858) #33	ENSHGLG00000040240	STC1 (ENSHGLG00000040196) #34
Sciuridae	ANCESTRAL SPECIES	29	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B #7	ENSGT00510000049722 #8	ENSGT00940000161961 #9	ENSGT00940000158614 #10	ENSGT00940000158299 #11	ENSGT00940000157269.a.a #12	ENSGT00940000160868 #13	ENSGT01030000234597.a.b.a #14	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b #19	ENSGT00950000182864.a.b.a #20	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A #24	ENSGT00940000154314.j #25	ENSGT00390000008225 #26	ENSGT00940000157734 #27	ENSGT00940000156208 #28	ENSGT00940000161685.A.a	ENSGT00940000154418.a.b #29	ENSGT00940000161406 #31	ENSGT00900000141143 #32	ENSGT00940000156716 #33	ENSGT00390000005989.b #34	ENSGT00940000162737 #35	ENSGT00940000160930 #36	ENSGT00940000158607 #37	ENSGT01100000263540.B.d
Marmotini	ANCESTRAL SPECIES	30	ENSGT00390000004380	ENSGT00940000158238	ENSGT00530000063668.B #7	ENSGT00510000049722 #8	ENSGT00940000161961 #9	ENSGT00940000158614 #10	ENSGT00940000158299 #11	ENSGT00940000157269.a.a #12	ENSGT00940000160868 #13	ENSGT01030000234597.a.b.a #14	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b #19	ENSGT00950000182864.a.b.a #20	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A #24	ENSGT00940000154314.j #25	ENSGT00390000008225 #26	ENSGT00940000157734 #27	ENSGT00940000156208 #28	ENSGT00940000161685.A.a	ENSGT00940000161406 #31	ENSGT00900000141143 #32	ENSGT00940000156716 #33	ENSGT00940000159453.e.b	ENSGT00390000005989.b #34	ENSGT00940000162737 #35	ENSGT00940000160930 #36	ENSGT00940000158607 #37	ENSGT01100000263540.B.d
Marmotini_b	ANCESTRAL SPECIES	241												ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00390000013415.a.b #19	ENSGT00950000182864.a.b.a #20	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A #24	ENSGT00940000154314.j #25	ENSGT00390000008225 #26	ENSGT00940000157734 #27	ENSGT00940000156208 #28	ENSGT00940000161685.A.a
Arctic ground squirrel	MODERN SPECIES	498													PNMA2 (ENSUPAG00010022624)	BNIP3L (ENSUPAG00010022623) #19	PPP2R2A (ENSUPAG00010022619) #20	EBF2 (ENSUPAG00010022616) #22	CDCA2 (ENSUPAG00010022612) #24	KCTD9 (ENSUPAG00010022608) #25	GNRH1 (ENSUPAG00010022605) #26	DOCK5 (ENSUPAG00010022602) #27
Squirrel	MODERN SPECIES	357												ADRA1A (ENSSTOG00000019888) #16	DPYSL2 (ENSSTOG00000004052) #17	BNIP3L (ENSSTOG00000004029) #19	PPP2R2A (ENSSTOG00000023339) #20	EBF2 (ENSSTOG00000007966) #22	CDCA2 (ENSSTOG00000008812) #24	KCTD9 (ENSSTOG00000008797) #25	GNRH1 (ENSSTOG00000008794) #26	DOCK5 (ENSSTOG00000008718) #27	NEFL (ENSSTOG00000019640) #28	NEFM (ENSSTOG00000019862) #29
Alpin marmot	MODERN SPECIES	61	SCARA3 (ENSMMMG00000013090)	CLU (ENSMMMG00000013091) #7	ENSMMMG00000013102 #8	ADAM2 (ENSMMMG00000013126) #9	EPHX2 (ENSMMMG00000013154) #10	ENSMMMG00000013222 #11	PTK2B (ENSMMMG00000013250) #12	ENSMMMG00000013471 #13	STMN4 (ENSMMMG00000013482) #14	ADRA1A (ENSMMMG00000013560) #16	DPYSL2 (ENSMMMG00000013573) #17	PNMA2 (ENSMMMG00000013583)	BNIP3L (ENSMMMG00000013590) #19	PPP2R2A (ENSMMMG00000013593) #20	ENSMMMG00000013633	EBF2 (ENSMMMG00000013647) #22	ENSMMMG00000013653	CDCA2 (ENSMMMG00000013660) #24	KCTD9 (ENSMMMG00000013722) #25	ENSMMMG00000013769	GNRH1 (ENSMMMG00000013776) #26	DOCK5 (ENSMMMG00000013783) #27	ENSMMMG00000013835	NEFL (ENSMMMG00000013840) #28	ENSMMMG00000013849	ADAM7 (ENSMMMG00000013881) #31	ADAMDEC1 (ENSMMMG00000013904) #32	ADAM28 (ENSMMMG00000013926) #33	ENSMMMG00000013954	STC1 (ENSMMMG00000013958) #34	NKX2-6 (ENSMMMG00000013962) #35
Eurasian red squirrel	MODERN SPECIES	14	CLU (ENSSVLG00005002257) #7	ENSSVLG00005002289 #8	ADAM2 (ENSSVLG00005002341) #9	EPHX2 (ENSSVLG00005002467) #10	CHRNA2 (ENSSVLG00005002577) #11	PTK2B (ENSSVLG00005002627) #12	ENSSVLG00005002776	TRIM35 (ENSSVLG00005002788) #13	STMN4 (ENSSVLG00005002831) #14	ZFP57 (ENSSVLG00005002906)	ADRA1A (ENSSVLG00005002931) #16	DPYSL2 (ENSSVLG00005002961) #17	PNMA2 (ENSSVLG00005003028)	ENSSVLG00005003040 #19	ENSSVLG00005003080 #20	EBF2 (ENSSVLG00005003172) #22	CDCA2 (ENSSVLG00005003275) #24	KCTD9 (ENSSVLG00005003331) #25	GNRH1 (ENSSVLG00005003367) #26	DOCK5 (ENSSVLG00005003397) #27	ENSSVLG00005003428	ENSSVLG00005003443	NEFL (ENSSVLG00005003461) #28	NEFM (ENSSVLG00005003494) #29	ADAM7 (ENSSVLG00005003562) #31	ADAMDEC1 (ENSSVLG00005003660) #32	ADAM28 (ENSSVLG00005003701) #33	STC1 (ENSSVLG00005003730) #34	NKX2-6 (ENSSVLG00005003752) #35	NKX3-1 (ENSSVLG00005003772) #36	SLC25A37 (ENSSVLG00005003790) #37