Murinae	ANCESTRAL SPECIES	16	ENSGT00940000158238	ENSGT00530000063668.B #8	ENSGT00510000049722 #9	ENSGT00940000161961 #10	ENSGT00940000158614 #11	ENSGT00940000158299 #12	ENSGT00940000157269.a.a #13	ENSGT00940000160868 #14	ENSGT01030000234597.a.b.a #15	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00860000136257 #18	ENSGT01030000234522.C.b.e.a.a.b #19	ENSGT00390000013415.a.b.p #20	ENSGT00950000182864.a.b.a #21	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A	ENSGT00940000154314	ENSGT00390000008225	ENSGT00940000157734	ENSGT00940000156208	ENSGT00940000161685.A.a	ENSGT00940000161406	ENSGT00900000141143	ENSGT00940000156716	ENSGT00390000005989.b	ENSGT00940000162737	ENSGT00940000160930	ENSGT00940000158607	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d
Mus	ANCESTRAL SPECIES	8	ENSGT00940000158238	ENSGT00530000063668.B #8	ENSGT00510000049722 #9	ENSGT00940000161961 #10	ENSGT00940000158614 #11	ENSGT00940000158299 #12	ENSGT00940000157269.a.a #13	ENSGT00940000160868 #14	ENSGT01030000234597.a.b.a #15	ENSGT00940000159105 #16	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00860000136257 #18	ENSGT01030000234522.C.b.e.a.a.b #19	ENSGT00390000013415.a.b.p #20	ENSGT00950000182864.a.b.a #21	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A	ENSGT00940000154314	ENSGT00390000008225	ENSGT00940000157734	ENSGT00940000156208	ENSGT00940000161685.A.a	ENSGT00940000161406	ENSGT00900000141143	ENSGT00940000156716	ENSGT00390000005989.b	ENSGT00940000162737	ENSGT00940000160930	ENSGT00940000158607	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d
Mus_A	ANCESTRAL SPECIES	12	ENSGT00530000063668.B #8	ENSGT00510000049722 #9	ENSGT00940000161961 #10	ENSGT00940000158614 #11	ENSGT00940000158299 #12	ENSGT00940000157269.a.a #13	ENSGT00940000160868 #14	ENSGT01030000234597.a.b.a #15	ENSGT00940000159105 #16	ENSGT00860000136174	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00860000136257 #18	ENSGT01030000234522.C.b.e.a.a.b #19	ENSGT00390000013415.a.b.p #20	ENSGT00950000182864.a.b.a.y #21	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A	ENSGT00940000154314	ENSGT00390000008225	ENSGT00940000157734	ENSGT00940000156208	ENSGT00940000161685.A.a	ENSGT00940000161406	ENSGT00900000141143	ENSGT00940000156716	ENSGT00390000005989.b	ENSGT00940000162737	ENSGT00940000160930	ENSGT00940000158607	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d
Mus_B	ANCESTRAL SPECIES	11	ENSGT00530000063668.B #8	ENSGT00510000049722 #9	ENSGT00940000161961 #10	ENSGT00940000158614 #11	ENSGT00940000158299 #12	ENSGT00940000157269.a.a #13	ENSGT00940000160868 #14	ENSGT01030000234597.a.b.a #15	ENSGT00940000159105 #16	ENSGT00860000136174	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00860000136257 #18	ENSGT01030000234522.C.b.e.a.a.b #19	ENSGT00390000013415.a.b.p #20	ENSGT00950000182864.a.b.a.y #21	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A	ENSGT00940000154314	ENSGT00390000008225	ENSGT00940000157734	ENSGT00940000156208	ENSGT00940000161685.A.a	ENSGT00940000161406	ENSGT00900000141143	ENSGT00940000156716	ENSGT00390000005989.b	ENSGT00940000162737	ENSGT00940000160930	ENSGT00940000158607	ENSGT00940000163436.n.a	ENSGT01100000263540.B.d
Mus_C	ANCESTRAL SPECIES	20	ENSGT00530000063668.B #8	ENSGT00510000049722 #9	ENSGT00940000161961 #10	ENSGT00940000158614 #11	ENSGT00940000158299 #12	ENSGT00940000157269.a.a #13	ENSGT00940000160868 #14	ENSGT01030000234597.a.b.a #15	ENSGT00940000159105 #16	ENSGT00860000136174	ENSGT01030000234527.A.a.b.a.a #17	ENSGT00860000136257 #18	ENSGT01030000234522.C.b.e.a.a.b #19	ENSGT00390000013415.a.b.p #20	ENSGT00950000182864.a.b.a.y #21	ENSGT00950000182859.A.a.a.b #22	ENSGT00940000154352.A	ENSGT00940000154314	ENSGT00390000008225	ENSGT00940000157734	ENSGT00940000156208	ENSGT00940000161685.A.a	ENSGT00940000154418.a.b	ENSGT00940000161406	ENSGT00900000141143	ENSGT00940000156716	ENSGT00390000005989.b	ENSGT00940000162737	ENSGT00940000160930	ENSGT00940000158607	ENSGT00940000163436.n.a
Steppe mouse	MODERN SPECIES	3151	ENSMSIG00000018158 #7	Clu (ENSMSIG00000018167) #8	Gulo (ENSMSIG00000018184) #9	Adam2 (ENSMSIG00000018204) #10	Ephx2 (ENSMSIG00000018278) #11	Chrna2 (ENSMSIG00000018435) #12	Ptk2b (ENSMSIG00000018459) #13	Trim35 (ENSMSIG00000018652) #14	Stmn4 (ENSMSIG00000018673) #15	Adra1a (ENSMSIG00000018756) #16	Dpysl2 (ENSMSIG00000018782) #17	ENSMSIG00000018813 #18	Pnma2 (ENSMSIG00000018820) #19	Bnip3l (ENSMSIG00000018832) #20	Ppp2r2a (ENSMSIG00000018898) #21	Ebf2 (ENSMSIG00000019023) #22	ENSMSIG00000019073 #23	ENSMSIG00000019082 #24
spretus	MODERN SPECIES	5	Clu (MGP_SPRETEiJ_G0020324) #8	Gulo (MGP_SPRETEiJ_G0020325) #9	Adam2 (MGP_SPRETEiJ_G0020326) #10	Ephx2 (MGP_SPRETEiJ_G0020327) #11	Chrna2 (MGP_SPRETEiJ_G0020328) #12	Ptk2b (MGP_SPRETEiJ_G0020329) #13	Trim35 (MGP_SPRETEiJ_G0020330) #14	Stmn4 (MGP_SPRETEiJ_G0020331) #15	Adra1a (MGP_SPRETEiJ_G0020332) #16	MGP_SPRETEiJ_G0020333	Dpysl2 (MGP_SPRETEiJ_G0020334) #17	MGP_SPRETEiJ_G0020335 #18	Pnma2 (MGP_SPRETEiJ_G0020336) #19	Bnip3l (MGP_SPRETEiJ_G0020337) #20	Ppp2r2a (MGP_SPRETEiJ_G0020338) #21	Ebf2 (MGP_SPRETEiJ_G0020339) #22	Cdca2 (MGP_SPRETEiJ_G0020340)	Kctd9 (MGP_SPRETEiJ_G0020341)	Gnrh1 (MGP_SPRETEiJ_G0020342)	Dock5 (MGP_SPRETEiJ_G0020343)	Nefm (MGP_SPRETEiJ_G0020344)	Nefl (MGP_SPRETEiJ_G0020345)	Adam7 (MGP_SPRETEiJ_G0020346)	Adamdec1 (MGP_SPRETEiJ_G0020347)	Adam28 (MGP_SPRETEiJ_G0020348)	Stc1 (MGP_SPRETEiJ_G0020349)	Nkx2-6 (MGP_SPRETEiJ_G0020350)	Nkx3-1 (MGP_SPRETEiJ_G0020351)	Slc25a37 (MGP_SPRETEiJ_G0020352)	MGP_SPRETEiJ_G0020354	MGP_SPRETEiJ_G0020355
Mouse	MODERN SPECIES	5	Ccdc25 (ENSMUSG00000022035)	Scara3 (ENSMUSG00000034463)	Clu (ENSMUSG00000022037) #8	Gulo (ENSMUSG00000034450) #9	Adam2 (ENSMUSG00000022039) #10	Ephx2 (ENSMUSG00000022040) #11	Chrna2 (ENSMUSG00000022041) #12	Ptk2b (ENSMUSG00000059456) #13	Trim35 (ENSMUSG00000022043) #14	Stmn4 (ENSMUSG00000022044) #15	Adra1a (ENSMUSG00000045875) #16	Dpysl2 (ENSMUSG00000022048) #17	Pnma2 (ENSMUSG00000046204) #19	Bnip3l (ENSMUSG00000022051) #20	Ppp2r2a (ENSMUSG00000022052) #21	Ebf2 (ENSMUSG00000022053) #22	Cdca2 (ENSMUSG00000048922)	Kctd9 (ENSMUSG00000034327)	Gnrh1 (ENSMUSG00000015812)	Dock5 (ENSMUSG00000044447)	Nefm (ENSMUSG00000022054)	Nefl (ENSMUSG00000022055)	Adam7 (ENSMUSG00000022056)	Adamdec1 (ENSMUSG00000022057)	Adam28 (ENSMUSG00000014725)	Stc1 (ENSMUSG00000014813)	Nkx2-6 (ENSMUSG00000044186)	Nkx3-1 (ENSMUSG00000022061)	Slc25a37 (ENSMUSG00000034248)	Synb (ENSMUSG00000047977)	Entpd4 (ENSMUSG00000095463)
Ryukyu mouse	MODERN SPECIES	5	Clu (MGP_CAROLIEiJ_G0019432) #8	Gulo (MGP_CAROLIEiJ_G0019433) #9	Adam2 (MGP_CAROLIEiJ_G0019434) #10	Ephx2 (MGP_CAROLIEiJ_G0019435) #11	Chrna2 (MGP_CAROLIEiJ_G0019436) #12	Ptk2b (MGP_CAROLIEiJ_G0019437) #13	Trim35 (MGP_CAROLIEiJ_G0019438) #14	Stmn4 (MGP_CAROLIEiJ_G0019439) #15	Adra1a (MGP_CAROLIEiJ_G0019440) #16	MGP_CAROLIEiJ_G0019441	Dpysl2 (MGP_CAROLIEiJ_G0019442) #17	MGP_CAROLIEiJ_G0019443 #18	Pnma2 (MGP_CAROLIEiJ_G0019444) #19	Bnip3l (MGP_CAROLIEiJ_G0019445) #20	MGP_CAROLIEiJ_G0019446 ##21	Ebf2 (MGP_CAROLIEiJ_G0019447) #22	Cdca2 (MGP_CAROLIEiJ_G0019448)	Kctd9 (MGP_CAROLIEiJ_G0019449)	Gnrh1 (MGP_CAROLIEiJ_G0019450)	Dock5 (MGP_CAROLIEiJ_G0019451)	Nefm (MGP_CAROLIEiJ_G0019452)	Nefl (MGP_CAROLIEiJ_G0019453)	Adam7 (MGP_CAROLIEiJ_G0019454)	Adamdec1 (MGP_CAROLIEiJ_G0019455)	Adam28 (MGP_CAROLIEiJ_G0019456)	Stc1 (MGP_CAROLIEiJ_G0019457)	Nkx2-6 (MGP_CAROLIEiJ_G0019458)	Nkx3-1 (MGP_CAROLIEiJ_G0019459)	Slc25a37 (MGP_CAROLIEiJ_G0019460)	MGP_CAROLIEiJ_G0019461	MGP_CAROLIEiJ_G0019462
Shrew mouse	MODERN SPECIES	21	Ccdc25 (MGP_PahariEiJ_G0030448)	Scara3 (MGP_PahariEiJ_G0030449)	Clu (MGP_PahariEiJ_G0030450) #8	Gulo (MGP_PahariEiJ_G0030451) #9	Adam2 (MGP_PahariEiJ_G0030452) #10	Ephx2 (MGP_PahariEiJ_G0030453) #11	Chrna2 (MGP_PahariEiJ_G0030454) #12	Ptk2b (MGP_PahariEiJ_G0030455) #13	Trim35 (MGP_PahariEiJ_G0030456) #14	Stmn4 (MGP_PahariEiJ_G0030457) #15	Adra1a (MGP_PahariEiJ_G0030458) #16	Dpysl2 (MGP_PahariEiJ_G0030459) #17	MGP_PahariEiJ_G0030460 #18	Bnip3l (MGP_PahariEiJ_G0030462) #20	Ppp2r2a (MGP_PahariEiJ_G0030463) #21	Ebf2 (MGP_PahariEiJ_G0030464) #22	Cdca2 (MGP_PahariEiJ_G0030465)	Kctd9 (MGP_PahariEiJ_G0030466)	Gnrh1 (MGP_PahariEiJ_G0030467)	Dock5 (MGP_PahariEiJ_G0030468)	Nefm (MGP_PahariEiJ_G0030469)	Nefl (MGP_PahariEiJ_G0030470)	Adam7 (MGP_PahariEiJ_G0030471)	Adamdec1 (MGP_PahariEiJ_G0030472)	Adam28 (MGP_PahariEiJ_G0030473)	Stc1 (MGP_PahariEiJ_G0030474)	MGP_PahariEiJ_G0030475	Nkx3-1 (MGP_PahariEiJ_G0030476)	Slc25a37 (MGP_PahariEiJ_G0030477)	MGP_PahariEiJ_G0030478	MGP_PahariEiJ_G0030479
Rat	MODERN SPECIES	6	Ccdc25 (ENSRNOG00000015939)	Scara3 (ENSRNOG00000016177)	Clu (ENSRNOG00000016460) #8	Gulo (ENSRNOG00000016648) #9	Adam2 (ENSRNOG00000017027) #10	Ephx2 (ENSRNOG00000017286) #11	Chrna2 (ENSRNOG00000017424) #12	Ptk2b (ENSRNOG00000027839) #13	Trim35 (ENSRNOG00000009449) #14	Stmn4 (ENSRNOG00000053334) #15	Adra1a (ENSRNOG00000009522) #16	Dpysl2 (ENSRNOG00000009625) #17	Pnma2 (ENSRNOG00000009815) #19	Bnip3l (ENSRNOG00000009820) #20	Ppp2r2a (ENSRNOG00000011158) #21	Ebf2 (ENSRNOG00000011548) #22	Cdca2 (ENSRNOG00000025302)	Gnrh1 (ENSRNOG00000066847)	Kctd9 (ENSRNOG00000012951)	Gnrh1 (ENSRNOG00000013433)	Dock5 (ENSRNOG00000024703)	LOC120097172 (ENSRNOG00000031532)	Nefl (ENSRNOG00000013658)	Nefm (ENSRNOG00000013916)	Adam7 (ENSRNOG00000014054)	Adamdec1 (ENSRNOG00000030724)	Adam28 (ENSRNOG00000014518)	ENSRNOG00000063586	AABR07018269.1 (ENSRNOG00000031720)	ENSRNOG00000063939	ENSRNOG00000067366