Bilateria DUPLICATION Bilateria ANCESTRAL SPECIES ENSGT00950000182859.A #22 Chordata ANCESTRAL SPECIES ENSGT00950000182859.A #22 Vertebrata DUPLICATION Vertebrata DUPLICATION Vertebrata ANCESTRAL SPECIES 996 ENSGT00950000182859.A.a.a #22 ENSGT00940000155650 Gnathostomata ANCESTRAL SPECIES 1123 ENSGT01030000234518.A.a.a ENSGT00940000165044 ENSGT00950000182859.A.a.a #22 Euteleostomi DUPLICATION Euteleostomi ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.b #22 Sarcopterygii ANCESTRAL SPECIES 159 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00390000008694.b.b ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000157556 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000179863 ENSGT00390000000134.b Tetrapoda ANCESTRAL SPECIES 115 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00960000187172 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000157556 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000179863 Amniota ANCESTRAL SPECIES 33 ENSGT00930000150969.A.c.a ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a Mammalia ANCESTRAL SPECIES 27 ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00390000017668 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT01000000222164 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d Theria ANCESTRAL SPECIES 38 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000165452.b ENSGT00940000160930 #34 ENSGT00940000158607 #36 Eutheria ANCESTRAL SPECIES 2 ENSGT00950000185082 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 Boreoeutheria ANCESTRAL SPECIES 8 ENSGT00950000185082 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 Euarchontoglires ANCESTRAL SPECIES 24 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 Primates ANCESTRAL SPECIES 25 ENSGT00950000183074.B.a.a ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Haplorrhini ANCESTRAL SPECIES 27 ENSGT00390000007091 ENSGT00950000183074.B.a.a ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Simiiformes ANCESTRAL SPECIES 25 ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380.m.a ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00910000147907 ENSGT01100000263540.B.d Catarrhini ANCESTRAL SPECIES 15 ENSGT00940000158598 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00910000147907 ENSGT01100000263540.B.d Hominoidea ANCESTRAL SPECIES 14 ENSGT00940000158598 ENSGT00390000004380.m.b.a #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Hominidae ANCESTRAL SPECIES 15 ENSGT00940000158598 ENSGT00390000004380.m.b.a #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00550000076401 #35 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Homo/Pan/Gorilla group ANCESTRAL SPECIES 13 ENSGT00390000004380.m.b.a #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00390000010355.q.b #20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00550000076401 #35 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Homo/Pan group ANCESTRAL SPECIES 12 ENSGT00390000004380.m.b.a #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00390000010355.q.b #20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.l #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00550000076401 #35 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Pan ANCESTRAL SPECIES 30 ENSGT00390000004380.m.b.a #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00390000010355.q.b #20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.l #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00550000076401 #35 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Bonobo MODERN SPECIES 21 CCDC25 (ENSPPAG00000035057) #7 SCARA3 (ENSPPAG00000031092) #8 CLU (ENSPPAG00000030389) #9 EPHX2 (ENSPPAG00000034443) #10 CHRNA2 (ENSPPAG00000042024) #11 PTK2B (ENSPPAG00000037974) #12 TRIM35 (ENSPPAG00000038841) #13 ENSPPAG00000043385 #14 ADRA1A (ENSPPAG00000043804) #15 DPYSL2 (ENSPPAG00000035831) #16 PNMA2 (ENSPPAG00000033170) #17 ENSPPAG00000040176 #18 BNIP3L (ENSPPAG00000036943) #19 ENSPPAG00000033286 #20 PPP2R2A (ENSPPAG00000035123) #21 EBF2 (ENSPPAG00000030675) #22 CDCA2 (ENSPPAG00000033215) #23 ENSPPAG00000030819 #24 GNRH1 (ENSPPAG00000028067) #25 DOCK5 (ENSPPAG00000040985) #26 NEFL (ENSPPAG00000039333) #27 NEFM (ENSPPAG00000029966) #28 ADAM7 (ENSPPAG00000042630) #29 ADAMDEC1 (ENSPPAG00000038047) #30 ADAM28 (ENSPPAG00000035327) #31 STC1 (ENSPPAG00000029446) #32 NKX2-6 (ENSPPAG00000027939) #33 NKX3-1 (ENSPPAG00000027435) #34 ENSPPAG00000033094 #35 SLC25A37 (ENSPPAG00000018748) #36 ENSPPAG00000033689 #37 Chimpanzee MODERN SPECIES 21 SCARA3 (ENSPTRG00000020108) #8 CLU (ENSPTRG00000020107) #9 EPHX2 (ENSPTRG00000020106) #10 CHRNA2 (ENSPTRG00000020105) #11 PTK2B (ENSPTRG00000020104) #12 TRIM35 (ENSPTRG00000020103) #13 STMN4 (ENSPTRG00000020102) #14 ENSPTRG00000045362 ADRA1A (ENSPTRG00000020100) #15 DPYSL2 (ENSPTRG00000020099) #16 PNMA2 (ENSPTRG00000051035) #17 ENSPTRG00000051226 #18 BNIP3L (ENSPTRG00000020097) #19 ENSPTRG00000047485 #20 PPP2R2A (ENSPTRG00000042450) #21 EBF2 (ENSPTRG00000003058) #22 CDCA2 (ENSPTRG00000020094) #23 KCTD9 (ENSPTRG00000020092) #24 GNRH1 (ENSPTRG00000020091) #25 DOCK5 (ENSPTRG00000020090) #26 NEFL (ENSPTRG00000045792) #27 NEFM (ENSPTRG00000020087) #28 ADAM7 (ENSPTRG00000020086) #29 ADAMDEC1 (ENSPTRG00000020085) #30 ADAM28 (ENSPTRG00000020084) #31 STC1 (ENSPTRG00000020083) #32 NKX2-6 (ENSPTRG00000020082) #33 NKX3-1 (ENSPTRG00000020081) #34 ENSPTRG00000052642 ENSPTRG00000042744 #35 SLC25A37 (ENSPTRG00000020079) #36 Human MODERN SPECIES 20 PBK (ENSG00000168078) ESCO2 (ENSG00000171320) CCDC25 (ENSG00000147419) #7 SCARA3 (ENSG00000168077) #8 CLU (ENSG00000120885) #9 EPHX2 (ENSG00000120915) #10 CHRNA2 (ENSG00000120903) #11 PTK2B (ENSG00000120899) #12 TRIM35 (ENSG00000104228) #13 STMN4 (ENSG00000015592) #14 ADRA1A (ENSG00000120907) #15 DPYSL2 (ENSG00000092964) #16 PNMA2 (ENSG00000240694) #17 BNIP3L (ENSG00000104765) #19 PPP2R2A (ENSG00000221914) #21 EBF2 (ENSG00000221818) #22 CDCA2 (ENSG00000184661) #23 KCTD9 (ENSG00000104756) ##24 GNRH1 (ENSG00000147437) #25 DOCK5 (ENSG00000147459) #26 NEFL (ENSG00000277586) #27 NEFM (ENSG00000104722) #28 ADAM7 (ENSG00000069206) #29 ADAMDEC1 (ENSG00000134028) #30 ADAM28 (ENSG00000042980) #31 STC1 (ENSG00000159167) #32 NKX2-6 (ENSG00000180053) #33 NKX3-1 (ENSG00000167034) #34 SLC25A37 (ENSG00000147454) #36 ENTPD4 (ENSG00000197217) LOXL2 (ENSG00000134013) Gorilla MODERN SPECIES 21 CCDC25 (ENSGGOG00000009685) #7 ENSGGOG00000004099 #8 CLU (ENSGGOG00000016926) #9 EPHX2 (ENSGGOG00000016993) #10 CHRNA2 (ENSGGOG00000015596) #11 PTK2B (ENSGGOG00000015589) #12 ENSGGOG00000010652 #13 ENSGGOG00000003341 #14 ADRA1A (ENSGGOG00000000511) #15 DPYSL2 (ENSGGOG00000000194) #16 PNMA2 (ENSGGOG00000043329) #17 ENSGGOG00000038243 #18 BNIP3L (ENSGGOG00000041240) #19 ENSGGOG00000027436 #20 PPP2R2A (ENSGGOG00000011500) #21 EBF2 (ENSGGOG00000001585) #22 CDCA2 (ENSGGOG00000022784) #23 KCTD9 (ENSGGOG00000004480) ##24 GNRH1 (ENSGGOG00000004479) #25 DOCK5 (ENSGGOG00000004460) #26 NEFL (ENSGGOG00000001429) #27 NEFM (ENSGGOG00000009880) #28 ADAM7 (ENSGGOG00000001012) #29 ADAMDEC1 (ENSGGOG00000001215) #30 ADAM28 (ENSGGOG00000017021) #31 STC1 (ENSGGOG00000026322) #32 NKX2-6 (ENSGGOG00000014372) #33 NKX3-1 (ENSGGOG00000041851) #34 ENSGGOG00000027906 #35 SLC25A37 (ENSGGOG00000005025) #36 ENTPD4 (ENSGGOG00000010428) Orangutan MODERN SPECIES 21 ESCO2 (ENSPPYG00000018469) CCDC25 (ENSPPYG00000018468) SCARA3 (ENSPPYG00000018467) #8 CLU (ENSPPYG00000018466) #9 EPHX2 (ENSPPYG00000018465) #10 CHRNA2 (ENSPPYG00000018464) #11 PTK2B (ENSPPYG00000018462) #12 TRIM35 (ENSPPYG00000018461) #13 STMN4 (ENSPPYG00000018460) #14 ADRA1A (ENSPPYG00000018459) #15 DPYSL2 (ENSPPYG00000018458) #16 PNMA2 (ENSPPYG00000018457) #17 ENSPPYG00000033464 BNIP3L (ENSPPYG00000038394) #19 PPP2R2A (ENSPPYG00000018455) #21 EBF2 (ENSPPYG00000018454) #22 CDCA2 (ENSPPYG00000018453) #23 KCTD9 (ENSPPYG00000018452) ##24 GNRH1 (ENSPPYG00000018451) #25 DOCK5 (ENSPPYG00000031126) #26 ENSPPYG00000033175 NEFL (ENSPPYG00000018449) #27 NEFM (ENSPPYG00000018448) #28 ADAM7 (ENSPPYG00000018447) #29 ADAMDEC1 (ENSPPYG00000018446) #30 ADAM28 (ENSPPYG00000018445) #31 STC1 (ENSPPYG00000018444) #32 NKX2-6 (ENSPPYG00000018443) #33 NKX3-1 (ENSPPYG00000018442) #34 ENSPPYG00000031644 ENSPPYG00000018439 #35 Gibbon MODERN SPECIES 23 PBK (ENSNLEG00000016542) ESCO2 (ENSNLEG00000016527) ENSNLEG00000016507 ##7 SCARA3 (ENSNLEG00000016505) #8 CLU (ENSNLEG00000016366) #9 EPHX2 (ENSNLEG00000016316) #10 CHRNA2 (ENSNLEG00000016309) #11 PTK2B (ENSNLEG00000016291) #12 TRIM35 (ENSNLEG00000016281) #13 STMN4 (ENSNLEG00000031885) #14 ADRA1A (ENSNLEG00000016272) #15 DPYSL2 (ENSNLEG00000016244) #16 PNMA2 (ENSNLEG00000019079) #17 BNIP3L (ENSNLEG00000016221) #19 PPP2R2A (ENSNLEG00000028888) #21 EBF2 (ENSNLEG00000016189) #22 CDCA2 (ENSNLEG00000016169) #23 KCTD9 (ENSNLEG00000016156) ##24 GNRH1 (ENSNLEG00000032497) #25 DOCK5 (ENSNLEG00000016075) #26 NEFL (ENSNLEG00000016066) #27 ENSNLEG00000016060 ADAM7 (ENSNLEG00000016022) #29 ADAMDEC1 (ENSNLEG00000015990) #30 ADAM28 (ENSNLEG00000015981) #31 STC1 (ENSNLEG00000015971) #32 NKX2-6 (ENSNLEG00000015970) #33 NKX3-1 (ENSNLEG00000030037) #34 ENSNLEG00000029971 ENSNLEG00000035146 SLC25A37 (ENSNLEG00000015964) #36 Cercopithecidae ANCESTRAL SPECIES 14 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00390000010355.r ##20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00910000147038 ENSGT00940000158607 #36 ENSGT00910000147907 Cercopithecinae ANCESTRAL SPECIES 16 ENSGT00940000158598 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00390000010355.r ##20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00910000147038 ENSGT00940000158607 #36 ENSGT00940000155597.n.b #37 Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 27 PBK (ENSCSAG00000015961) ESCO2 (ENSCSAG00000015966) CCDC25 (ENSCSAG00000015972) ##7 SCARA3 (ENSCSAG00000015975) #8 CLU (ENSCSAG00000015978) #9 EPHX2 (ENSCSAG00000015986) #10 CHRNA2 (ENSCSAG00000015995) #11 PTK2B (ENSCSAG00000016005) #12 TRIM35 (ENSCSAG00000016014) #13 STMN4 (ENSCSAG00000016018) #14 ADRA1A (ENSCSAG00000016022) #15 DPYSL2 (ENSCSAG00000016049) #16 PNMA2 (ENSCSAG00000018524) #17 BNIP3L (ENSCSAG00000016055) #19 PPP2R2A (ENSCSAG00000016060) #21 ENSCSAG00000016062 #22 ENSCSAG00000016068 #22 CDCA2 (ENSCSAG00000016076) #23 ENSCSAG00000016100 ##24 GNRH1 (ENSCSAG00000016109) #25 DOCK5 (ENSCSAG00000016128) #26 NEFL (ENSCSAG00000016132) #27 NEFM (ENSCSAG00000016135) #28 ADAM7 (ENSCSAG00000016187) #29 ADAMDEC1 (ENSCSAG00000016207) #30 ADAM28 (ENSCSAG00000016220) #31 STC1 (ENSCSAG00000016224) #32 NKX2-6 (ENSCSAG00000016228) #33 NKX3-1 (ENSCSAG00000016229) #34 SLC25A37 (ENSCSAG00000016232) #36 ENTPD4 (ENSCSAG00000016236) Vervet Monkey MODERN SPECIES 27 ESCO2 (ENSCSAG00000015966) CCDC25 (ENSCSAG00000015972) ##7 SCARA3 (ENSCSAG00000015975) #8 CLU (ENSCSAG00000015978) #9 EPHX2 (ENSCSAG00000015986) #10 CHRNA2 (ENSCSAG00000015995) #11 PTK2B (ENSCSAG00000016005) #12 TRIM35 (ENSCSAG00000016014) #13 STMN4 (ENSCSAG00000016018) #14 ADRA1A (ENSCSAG00000016022) #15 DPYSL2 (ENSCSAG00000016049) #16 PNMA2 (ENSCSAG00000018524) #17 BNIP3L (ENSCSAG00000016055) #19 PPP2R2A (ENSCSAG00000016060) #21 ENSCSAG00000016062 #22 ENSCSAG00000016068 #22 CDCA2 (ENSCSAG00000016076) #23 ENSCSAG00000016100 ##24 GNRH1 (ENSCSAG00000016109) #25 DOCK5 (ENSCSAG00000016128) #26 NEFL (ENSCSAG00000016132) #27 NEFM (ENSCSAG00000016135) #28 ADAM7 (ENSCSAG00000016187) #29 ADAMDEC1 (ENSCSAG00000016207) #30 ADAM28 (ENSCSAG00000016220) #31 STC1 (ENSCSAG00000016224) #32 NKX2-6 (ENSCSAG00000016228) #33 NKX3-1 (ENSCSAG00000016229) #34 SLC25A37 (ENSCSAG00000016232) #36 ENTPD4 (ENSCSAG00000016236) LOXL2 (ENSCSAG00000016241) Cercopithecinae_a ANCESTRAL SPECIES 15 ENSGT00940000158598 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00390000010355.r ##20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00910000147586 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00910000147038 ENSGT00940000158607 #36 Macaca ANCESTRAL SPECIES 14 ENSGT00940000158598 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00390000010355.r ##20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00910000147586 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00910000147038 Pig-tailed macaque MODERN SPECIES 579 SCARA3 (ENSMNEG00000037952) #8 CLU (ENSMNEG00000043022) #9 EPHX2 (ENSMNEG00000031898) #10 CHRNA2 (ENSMNEG00000036009) #11 PTK2B (ENSMNEG00000032809) #12 TRIM35 (ENSMNEG00000033062) #13 STMN4 (ENSMNEG00000042099) #14 ADRA1A (ENSMNEG00000032467) #15 DPYSL2 (ENSMNEG00000031797) #16 ENSMNEG00000040560 PNMA2 (ENSMNEG00000021767) #17 BNIP3L (ENSMNEG00000032945) #19 ENSMNEG00000039270 ##20 PPP2R2A (ENSMNEG00000023471) #21 ENSMNEG00000010649 EBF2 (ENSMNEG00000040606) #22 ENSMNEG00000035457 CDCA2 (ENSMNEG00000036287) #23 KCTD9 (ENSMNEG00000044328) ##24 GNRH1 (ENSMNEG00000042496) #25 DOCK5 (ENSMNEG00000043546) #26 ENSMNEG00000022002 NEFL (ENSMNEG00000039854) #27 NEFM (ENSMNEG00000028916) #28 ADAM7 (ENSMNEG00000041516) #29 ADAMDEC1 (ENSMNEG00000027019) #30 ADAM28 (ENSMNEG00000035956) #31 STC1 (ENSMNEG00000044899) #32 NKX2-6 (ENSMNEG00000029977) #33 NKX3-1 (ENSMNEG00000029607) #34 SLC25A37 (ENSMNEG00000033209) #36 Macaca_a ANCESTRAL SPECIES 16 ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Crab-eating macaque MODERN SPECIES 18 ESCO2 (ENSMFAG00000044655) ENSMFAG00000035835 ##7 SCARA3 (ENSMFAG00000026741) #8 CLU (ENSMFAG00000041649) #9 EPHX2 (ENSMFAG00000036427) #10 CHRNA2 (ENSMFAG00000003637) #11 PTK2B (ENSMFAG00000003719) #12 TRIM35 (ENSMFAG00000035683) #13 ENSMFAG00000054931 STMN4 (ENSMFAG00000032113) #14 ADRA1A (ENSMFAG00000030813) #15 DPYSL2 (ENSMFAG00000005287) #16 PNMA2 (ENSMFAG00000000029) #17 BNIP3L (ENSMFAG00000003324) #19 PPP2R2A (ENSMFAG00000045160) #21 EBF2 (ENSMFAG00000036796) #22 CDCA2 (ENSMFAG00000044937) #23 KCTD9 (ENSMFAG00000000476) #24 GNRH1 (ENSMFAG00000052417) #25 DOCK5 (ENSMFAG00000001732) #26 NEFL (ENSMFAG00000031550) #27 ENSMFAG00000044080 ENSMFAG00000057085 ADAM7 (ENSMFAG00000045244) #29 ADAMDEC1 (ENSMFAG00000007172) #30 ADAM28 (ENSMFAG00000039137) #31 STC1 (ENSMFAG00000060775) #32 NKX2-6 (ENSMFAG00000040141) #33 NKX3-1 (ENSMFAG00000047611) #34 SLC25A37 (ENSMFAG00000027746) #36 ENTPD4 (ENSMFAG00000037815) Rhesus MODERN SPECIES 18 CCDC25 (ENSMMUG00000016016) ##7 ENSMMUG00000056404 SCARA3 (ENSMMUG00000021517) #8 CLU (ENSMMUG00000021516) #9 EPHX2 (ENSMMUG00000021515) #10 CHRNA2 (ENSMMUG00000021514) #11 PTK2B (ENSMMUG00000019159) #12 TRIM35 (ENSMMUG00000010092) #13 STMN4 (ENSMMUG00000018670) #14 ADRA1A (ENSMMUG00000023112) #15 ENSMMUG00000055650 DPYSL2 (ENSMMUG00000012718) #16 PNMA2 (ENSMMUG00000042420) #17 BNIP3L (ENSMMUG00000023646) #19 PPP2R2A (ENSMMUG00000041905) #21 EBF2 (ENSMMUG00000005760) #22 CDCA2 (ENSMMUG00000010582) #23 KCTD9 (ENSMMUG00000010151) ##24 GNRH1 (ENSMMUG00000029018) #25 DOCK5 (ENSMMUG00000008028) #26 NEFL (ENSMMUG00000003348) #27 NEFM (ENSMMUG00000000639) #28 ENSMMUG00000058642 ENSMMUG00000054167 ADAM7 (ENSMMUG00000007909) #29 ADAMDEC1 (ENSMMUG00000005318) #30 ADAM28 (ENSMMUG00000005317) #31 STC1 (ENSMMUG00000046186) #32 NKX2-6 (ENSMMUG00000020863) #33 NKX3-1 (ENSMMUG00000009796) #34 ENSMMUG00000064526 Cercopithecinae_b ANCESTRAL SPECIES 9 ENSGT00940000158598 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00390000010355.r ##20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00910000147586 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00910000147038 ENSGT00940000158607 #36 Olive baboon MODERN SPECIES 18 SCARA5 (ENSPANG00000021266) PBK (ENSPANG00000024523) ESCO2 (ENSPANG00000008112) ENSPANG00000012552 ##7 SCARA3 (ENSPANG00000016907) #8 CLU (ENSPANG00000024524) #9 EPHX2 (ENSPANG00000001096) #10 CHRNA2 (ENSPANG00000015733) #11 PTK2B (ENSPANG00000019189) #12 TRIM35 (ENSPANG00000017759) #13 STMN4 (ENSPANG00000007322) #14 ADRA1A (ENSPANG00000024527) #15 DPYSL2 (ENSPANG00000024528) #16 PNMA2 (ENSPANG00000007854) #17 ENSPANG00000048024 EBF2 (ENSPANG00000020231) #22 CDCA2 (ENSPANG00000008115) #23 KCTD9 (ENSPANG00000019100) ##24 DOCK5 (ENSPANG00000005750) #26 NEFL (ENSPANG00000011988) #27 NEFM (ENSPANG00000018460) #28 ENSPANG00000038971 ENSPANG00000030915 ADAM7 (ENSPANG00000017131) #29 ADAMDEC1 (ENSPANG00000022045) #30 ADAM28 (ENSPANG00000005176) #31 ENSPANG00000005177 STC1 (ENSPANG00000048289) #32 NKX2-6 (ENSPANG00000019014) #33 NKX3-1 (ENSPANG00000004934) #34 SLC25A37 (ENSPANG00000000653) #36 Cercopithecinae_d ANCESTRAL SPECIES 50 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00390000010355.r ##20 ENSGT00390000012635.a.b ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00910000147586 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00910000147038 ENSGT00940000158607 #36 Drill MODERN SPECIES 879 ENSMLEG00000029491 ##7 SCARA3 (ENSMLEG00000035030) #8 CLU (ENSMLEG00000035141) #9 EPHX2 (ENSMLEG00000029411) #10 CHRNA2 (ENSMLEG00000029000) #11 PTK2B (ENSMLEG00000030832) #12 TRIM35 (ENSMLEG00000030731) #13 STMN4 (ENSMLEG00000037742) #14 ADRA1A (ENSMLEG00000043053) #15 DPYSL2 (ENSMLEG00000042022) #16 PNMA2 (ENSMLEG00000010554) #17 BNIP3L (ENSMLEG00000041439) #19 ENSMLEG00000037027 #20 ENSMLEG00000037332 PPP2R2A (ENSMLEG00000040846) #21 EBF2 (ENSMLEG00000035290) #22 Sooty mangabey MODERN SPECIES 555 ENSCATG00000033671 ##7 SCARA3 (ENSCATG00000037167) #8 CLU (ENSCATG00000009271) #9 EPHX2 (ENSCATG00000029846) #10 CHRNA2 (ENSCATG00000031746) #11 PTK2B (ENSCATG00000032885) #12 TRIM35 (ENSCATG00000032262) #13 STMN4 (ENSCATG00000022939) #14 ADRA1A (ENSCATG00000045125) #15 DPYSL2 (ENSCATG00000034654) #16 PNMA2 (ENSCATG00000017448) #17 BNIP3L (ENSCATG00000036601) #19 ENSCATG00000045185 ##20 ENSCATG00000045206 PPP2R2A (ENSCATG00000037089) #21 EBF2 (ENSCATG00000039203) #22 CDCA2 (ENSCATG00000031991) #23 KCTD9 (ENSCATG00000038906) ##24 GNRH1 (ENSCATG00000041582) #25 DOCK5 (ENSCATG00000043562) #26 ENSCATG00000030152 NEFL (ENSCATG00000042551) #27 NEFM (ENSCATG00000042530) #28 ADAM7 (ENSCATG00000041478) #29 ADAMDEC1 (ENSCATG00000043054) #30 ADAM28 (ENSCATG00000043598) #31 STC1 (ENSCATG00000026956) #32 NKX2-6 (ENSCATG00000045337) #33 NKX3-1 (ENSCATG00000008649) #34 SLC25A37 (ENSCATG00000035944) #36 ENSCATG00000035953 Rhinopithecus ANCESTRAL SPECIES 55 ENSGT00390000004380.m.a.b ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00960000186788 #18 ENSGT00390000013415.a.b #19 ENSGT00390000010355.r ##20 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.k.b.b.a ##24 ENSGT00940000154314.k.b.a ##24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00910000147038 ENSGT00940000158607 #36 Golden snub-nosed monkey MODERN SPECIES 2058 ENSRROG00000028567 ##7 SCARA3 (ENSRROG00000041739) #8 CLU (ENSRROG00000040828) #9 EPHX2 (ENSRROG00000027951) #10 CHRNA2 (ENSRROG00000032763) #11 PTK2B (ENSRROG00000042745) #12 TRIM35 (ENSRROG00000030715) #13 STMN4 (ENSRROG00000042832) #14 ADRA1A (ENSRROG00000041301) #15 DPYSL2 (ENSRROG00000040914) #16 PNMA2 (ENSRROG00000020262) #17 ENSRROG00000036299 BNIP3L (ENSRROG00000031724) #19 ENSRROG00000038154 ##20 PPP2R2A (ENSRROG00000041692) #21 EBF2 (ENSRROG00000034779) #22 CDCA2 (ENSRROG00000035636) #23 KCTD9 (ENSRROG00000032392) ##24 GNRH1 (ENSRROG00000043250) #25 DOCK5 (ENSRROG00000028212) #26 NEFL (ENSRROG00000037096) #27 NEFM (ENSRROG00000023277) #28 Black snub-nosed monkey MODERN SPECIES 98 ENSRBIG00000043704 ##7 SCARA3 (ENSRBIG00000043052) #8 CLU (ENSRBIG00000030449) #9 EPHX2 (ENSRBIG00000044411) #10 CHRNA2 (ENSRBIG00000030777) #11 PTK2B (ENSRBIG00000030703) #12 TRIM35 (ENSRBIG00000038938) #13 STMN4 (ENSRBIG00000039520) #14 ADRA1A (ENSRBIG00000043723) #15 DPYSL2 (ENSRBIG00000038509) #16 PNMA2 (ENSRBIG00000016543) #17 ENSRBIG00000006170 #18 BNIP3L (ENSRBIG00000043157) #19 ENSRBIG00000031494 ##20 PPP2R2A (ENSRBIG00000028497) #21 EBF2 (ENSRBIG00000011662) #22 ENSRBIG00000026024 CDCA2 (ENSRBIG00000039250) #23 ENSRBIG00000044540 ##24 GNRH1 (ENSRBIG00000042433) #25 DOCK5 (ENSRBIG00000022198) #26 NEFL (ENSRBIG00000033397) #27 NEFM (ENSRBIG00000044501) #28 ADAM7 (ENSRBIG00000022906) #29 ADAMDEC1 (ENSRBIG00000032045) #30 ADAM28 (ENSRBIG00000020078) #31 STC1 (ENSRBIG00000032107) #32 NKX2-6 (ENSRBIG00000041260) #33 NKX3-1 (ENSRBIG00000023436) #34 SLC25A37 (ENSRBIG00000032128) #36 ENSRBIG00000038195 Platyrrhini ANCESTRAL SPECIES 29 ENSGT00950000183074.B.a.a ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380.m.a ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.l #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00910000147907 ENSGT01100000263540.B.d Cebidae ANCESTRAL SPECIES 30 ENSGT00950000183074.B.a.a ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380.m.a ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.l #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Marmoset MODERN SPECIES 4 ESCO2 (ENSCJAG00000015416) ENSCJAG00000052322 ##7 SCARA3 (ENSCJAG00000019539) #8 CLU (ENSCJAG00000019662) #9 EPHX2 (ENSCJAG00000019677) #10 CHRNA2 (ENSCJAG00000019690) #11 PTK2B (ENSCJAG00000019574) #12 TRIM35 (ENSCJAG00000019863) #13 STMN4 (ENSCJAG00000019866) #14 ADRA1A (ENSCJAG00000080222) #15 ENSCJAG00000084865 DPYSL2 (ENSCJAG00000042451) #16 BNIP3L (ENSCJAG00000075722) #19 PPP2R2A (ENSCJAG00000019902) #21 ENSCJAG00000077305 EBF2 (ENSCJAG00000019921) #22 ENSCJAG00000084648 CDCA2 (ENSCJAG00000019958) #23 KCTD9 (ENSCJAG00000019969) #24 DOCK5 (ENSCJAG00000019986) #26 NEFL (ENSCJAG00000020035) #27 ENSCJAG00000010608 ENSCJAG00000082023 NEFM (ENSCJAG00000020047) #28 ENSCJAG00000076019 ENSCJAG00000070069 ADAM7 (ENSCJAG00000020053) #29 ADAMDEC1 (ENSCJAG00000020062) #30 ADAM28 (ENSCJAG00000020075) #31 ENSCJAG00000064111 ENSCJAG00000082609 Cebidae_a ANCESTRAL SPECIES 44 ENSGT00950000183074.B.a.a ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380.m.a ##7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.l #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Capuchin DUPLICATION Capuchin MODERN SPECIES 125 PBK (ENSCCAG00000026612) ESCO2 (ENSCCAG00000020110) CCDC25 (ENSCCAG00000037254) #7 SCARA3 (ENSCCAG00000036648) #8 CLU (ENSCCAG00000019707) #9 EPHX2 (ENSCCAG00000028330) #10 CHRNA2 (ENSCCAG00000025139) #11 PTK2B (ENSCCAG00000027006) #12 TRIM35 (ENSCCAG00000036836) #13 STMN4 (ENSCCAG00000024945) #14 ENSCCAG00000021336 ADRA1A (ENSCCAG00000017294) #15 DPYSL2 (ENSCCAG00000034157) #16 BNIP3L (ENSCCAG00000037644) #19 PPP2R2A (ENSCCAG00000026114) #21 ENSCCAG00000029792 #22 Capuchin MODERN SPECIES 221 ENSCCAG00000017319 #22 CDCA2 (ENSCCAG00000026541) #23 ENSCCAG00000030611 #24 GNRH1 (ENSCCAG00000030404) #25 DOCK5 (ENSCCAG00000033128) #26 ENSCCAG00000004867 NEFL (ENSCCAG00000035869) #27 NEFM (ENSCCAG00000028697) #28 ADAM7 (ENSCCAG00000028360) #29 ADAMDEC1 (ENSCCAG00000034847) #30 ADAM28 (ENSCCAG00000021142) #31 STC1 (ENSCCAG00000029913) #32 NKX2-6 (ENSCCAG00000030537) #33 NKX3-1 (ENSCCAG00000029164) #34 SLC25A37 (ENSCCAG00000029132) #36 ENTPD4 (ENSCCAG00000022243) Bolivian squirrel monkey MODERN SPECIES 132 NUGGC (ENSSBOG00000028930) SCARA5 (ENSSBOG00000028648) ESCO2 (ENSSBOG00000023036) ENSSBOG00000032304 ##7 SCARA3 (ENSSBOG00000021459) #8 CLU (ENSSBOG00000030641) #9 EPHX2 (ENSSBOG00000034083) #10 CHRNA2 (ENSSBOG00000032890) #11 PTK2B (ENSSBOG00000020869) #12 TRIM35 (ENSSBOG00000023023) #13 STMN4 (ENSSBOG00000027671) #14 ADRA1A (ENSSBOG00000019482) #15 DPYSL2 (ENSSBOG00000022904) #16 BNIP3L (ENSSBOG00000001484) #19 PPP2R2A (ENSSBOG00000022095) #21 EBF2 (ENSSBOG00000029332) #22 CDCA2 (ENSSBOG00000025034) #23 KCTD9 (ENSSBOG00000020467) #24 GNRH1 (ENSSBOG00000030355) #25 DOCK5 (ENSSBOG00000018389) #26 ENSSBOG00000031985 #27 ENSSBOG00000026028 ADAM7 (ENSSBOG00000033466) #29 ADAMDEC1 (ENSSBOG00000023422) #30 ADAM28 (ENSSBOG00000021104) #31 STC1 (ENSSBOG00000008335) #32 NKX2-6 (ENSSBOG00000001212) #33 NKX3-1 (ENSSBOG00000031270) #34 ENSSBOG00000030155 ENSSBOG00000027698 SLC25A37 (ENSSBOG00000033528) #36 Mas night monkey MODERN SPECIES 974 ENSANAG00000027853 ##7 SCARA3 (ENSANAG00000032323) #8 CLU (ENSANAG00000032018) #9 EPHX2 (ENSANAG00000006028) #10 CHRNA2 (ENSANAG00000023714) #11 PTK2B (ENSANAG00000034147) #12 TRIM35 (ENSANAG00000034109) #13 STMN4 (ENSANAG00000021238) #14 ENSANAG00000032951 ADRA1A (ENSANAG00000022712) #15 ENSANAG00000034640 DPYSL2 (ENSANAG00000034307) #16 ENSANAG00000031085 BNIP3L (ENSANAG00000025801) #19 PPP2R2A (ENSANAG00000033237) #21 EBF2 (ENSANAG00000022835) #22 CDCA2 (ENSANAG00000037820) #23 ENSANAG00000025804 #24 GNRH1 (ENSANAG00000034874) #25 DOCK5 (ENSANAG00000032901) #26 NEFL (ENSANAG00000022798) #27 NEFM (ENSANAG00000029941) #28 ADAM7 (ENSANAG00000024071) #29 ADAMDEC1 (ENSANAG00000023742) #30 ADAM28 (ENSANAG00000026076) #31 STC1 (ENSANAG00000026165) #32 NKX2-6 (ENSANAG00000027024) #33 NKX3-1 (ENSANAG00000037342) #34 SLC25A37 (ENSANAG00000035262) #36 ENSANAG00000034733 ENTPD4 (ENSANAG00000038166) Tarsier MODERN SPECIES 5964 EBF2 (ENSTSYG00000019489) #22 CDCA2 (ENSTSYG00000005048) #23 KCTD9 (ENSTSYG00000014586) #24 GNRH1 (ENSTSYG00000014585) #25 ENSTSYG00000034892 #26 Strepsirrhini ANCESTRAL SPECIES 25 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Lemuriformes DUPLICATION Lemuriformes ANCESTRAL SPECIES 32 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b.e #22 ENSGT00950000182859.A.a.a.b.f #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Lemuriformes_a ANCESTRAL SPECIES 34 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b.e #22 ENSGT00950000182859.A.a.a.b.f #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Coquerels sifaka MODERN SPECIES 919 PBK (ENSPCOG00000018801) ESCO2 (ENSPCOG00000021572) CCDC25 (ENSPCOG00000005370) #7 SCARA3 (ENSPCOG00000017002) #8 CLU (ENSPCOG00000009703) #9 ENSPCOG00000020409 EPHX2 (ENSPCOG00000027937) #10 CHRNA2 (ENSPCOG00000019897) #11 PTK2B (ENSPCOG00000026528) #12 TRIM35 (ENSPCOG00000016334) #13 STMN4 (ENSPCOG00000028776) #14 ADRA1A (ENSPCOG00000028770) #15 DPYSL2 (ENSPCOG00000027797) #16 BNIP3L (ENSPCOG00000026018) #19 PPP2R2A (ENSPCOG00000023269) #21 EBF2 (ENSPCOG00000027078) #22 CDCA2 (ENSPCOG00000023393) #23 KCTD9 (ENSPCOG00000020414) #24 GNRH1 (ENSPCOG00000024165) #25 DOCK5 (ENSPCOG00000016268) #26 NEFL (ENSPCOG00000026085) #27 NEFM (ENSPCOG00000022965) #28 ADAM7 (ENSPCOG00000026532) #29 ENSPCOG00000021910 #31 ENSPCOG00000008142 STC1 (ENSPCOG00000019531) #32 ENSPCOG00000026813 NKX2-6 (ENSPCOG00000021761) #33 NKX3-1 (ENSPCOG00000024990) #34 SLC25A37 (ENSPCOG00000028846) #36 ENTPD4 (ENSPCOG00000010184) Mouse lemur MODERN SPECIES 12 ESCO2 (ENSMICG00000029625) CCDC25 (ENSMICG00000042632) #7 SCARA3 (ENSMICG00000035553) #8 CLU (ENSMICG00000007720) #9 ENSMICG00000028711 ENSMICG00000007709 #10 CHRNA2 (ENSMICG00000007702) #11 PTK2B (ENSMICG00000007677) #12 TRIM35 (ENSMICG00000038500) #13 STMN4 (ENSMICG00000012281) #14 ENSMICG00000026774 ADRA1A (ENSMICG00000015812) #15 DPYSL2 (ENSMICG00000015794) #16 BNIP3L (ENSMICG00000015781) #19 PPP2R2A (ENSMICG00000034854) #21 ENSMICG00000030813 #22 ENSMICG00000043737 ENSMICG00000015774 #22 CDCA2 (ENSMICG00000031889) #23 KCTD9 (ENSMICG00000016754) #24 GNRH1 (ENSMICG00000037976) #25 DOCK5 (ENSMICG00000016726) #26 NEFL (ENSMICG00000030432) #27 ENSMICG00000036167 ADAM7 (ENSMICG00000002694) #29 ADAMDEC1 (ENSMICG00000047490) #30 ENSMICG00000034192 ADAM28 (ENSMICG00000042341) #31 STC1 (ENSMICG00000032857) #32 NKX2-6 (ENSMICG00000042062) #33 NKX3-1 (ENSMICG00000011189) #34 Lemuriformes ANCESTRAL SPECIES 32 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b.e #22 ENSGT00950000182859.A.a.a.b.f #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Lemuriformes_a ANCESTRAL SPECIES 34 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b.e #22 ENSGT00950000182859.A.a.a.b.f #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Greater bamboo lemur MODERN SPECIES 236 ESCO2 (ENSPSMG00000011084) CCDC25 (ENSPSMG00000011072) #7 SCARA3 (ENSPSMG00000011055) #8 CLU (ENSPSMG00000011031) #9 ENSPSMG00000011018 EPHX2 (ENSPSMG00000010900) #10 CHRNA2 (ENSPSMG00000010720) #11 PTK2B (ENSPSMG00000010424) #12 TRIM35 (ENSPSMG00000010142) #13 STMN4 (ENSPSMG00000010113) #14 ADRA1A (ENSPSMG00000010078) #15 DPYSL2 (ENSPSMG00000009959) #16 PNMA2 (ENSPSMG00000009835) #17 BNIP3L (ENSPSMG00000009825) #19 PPP2R2A (ENSPSMG00000009553) #21 EBF2 (ENSPSMG00000009327) #22 CDCA2 (ENSPSMG00000009257) #23 KCTD9 (ENSPSMG00000009241) #24 GNRH1 (ENSPSMG00000009210) #25 ENSPSMG00000009203 Mouse lemur MODERN SPECIES 12 SCARA3 (ENSMICG00000035553) #8 CLU (ENSMICG00000007720) #9 ENSMICG00000028711 ENSMICG00000007709 #10 CHRNA2 (ENSMICG00000007702) #11 PTK2B (ENSMICG00000007677) #12 TRIM35 (ENSMICG00000038500) #13 STMN4 (ENSMICG00000012281) #14 ENSMICG00000026774 ADRA1A (ENSMICG00000015812) #15 DPYSL2 (ENSMICG00000015794) #16 BNIP3L (ENSMICG00000015781) #19 PPP2R2A (ENSMICG00000034854) #21 ENSMICG00000030813 #22 ENSMICG00000043737 ENSMICG00000015774 #22 CDCA2 (ENSMICG00000031889) #23 KCTD9 (ENSMICG00000016754) #24 GNRH1 (ENSMICG00000037976) #25 DOCK5 (ENSMICG00000016726) #26 NEFL (ENSMICG00000030432) #27 ENSMICG00000036167 ADAM7 (ENSMICG00000002694) #29 ADAMDEC1 (ENSMICG00000047490) #30 ENSMICG00000034192 ADAM28 (ENSMICG00000042341) #31 STC1 (ENSMICG00000032857) #32 NKX2-6 (ENSMICG00000042062) #33 NKX3-1 (ENSMICG00000011189) #34 SLC25A37 (ENSMICG00000034841) #36 ENTPD4 (ENSMICG00000011165) Bushbaby MODERN SPECIES 189 ESCO2 (ENSOGAG00000011834) CCDC25 (ENSOGAG00000011829) #7 SCARA3 (ENSOGAG00000031170) #8 CLU (ENSOGAG00000030580) #9 ENSOGAG00000026271 EPHX2 (ENSOGAG00000003192) #10 CHRNA2 (ENSOGAG00000033591) #11 PTK2B (ENSOGAG00000003185) #12 TRIM35 (ENSOGAG00000027382) #13 STMN4 (ENSOGAG00000010549) #14 ADRA1A (ENSOGAG00000026801) #15 DPYSL2 (ENSOGAG00000011250) #16 PNMA2 (ENSOGAG00000011246) #17 BNIP3L (ENSOGAG00000003163) #19 PPP2R2A (ENSOGAG00000034741) #21 EBF2 (ENSOGAG00000010783) #22 CDCA2 (ENSOGAG00000002970) #23 KCTD9 (ENSOGAG00000002969) #24 GNRH1 (ENSOGAG00000016753) #25 DOCK5 (ENSOGAG00000002967) #26 NEFL (ENSOGAG00000015179) #27 ENSOGAG00000026104 ADAM7 (ENSOGAG00000015171) #29 ADAMDEC1 (ENSOGAG00000015169) #30 ADAM28 (ENSOGAG00000015163) #31 STC1 (ENSOGAG00000010809) #32 NKX2-6 (ENSOGAG00000026099) #33 NKX3-1 (ENSOGAG00000001303) #34 SLC25A37 (ENSOGAG00000001295) #36 ENTPD4 (ENSOGAG00000001293) LOXL2 (ENSOGAG00000001292) Euarchontoglires_A ANCESTRAL SPECIES 25 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d Glires ANCESTRAL SPECIES 26 ENSGT00950000185466 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d Lagomorpha ANCESTRAL SPECIES 60 ENSGT00950000183074.B.a.a ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Rabbit MODERN SPECIES 11 SCARA3 (ENSOCUG00000009918) #8 CLU (ENSOCUG00000005985) #9 ENSOCUG00000024474 ADAM2 (ENSOCUG00000006251) CHRNA2 (ENSOCUG00000007679) #11 PTK2B (ENSOCUG00000007668) #12 TRIM35 (ENSOCUG00000007658) #13 STMN4 (ENSOCUG00000007652) #14 ENSOCUG00000038802 ADRA1A (ENSOCUG00000000775) #15 ENSOCUG00000033215 DPYSL2 (ENSOCUG00000016002) #16 ENSOCUG00000033577 BNIP3L (ENSOCUG00000010542) #19 PPP2R2A (ENSOCUG00000027088) #21 EBF2 (ENSOCUG00000011972) #22 CDCA2 (ENSOCUG00000014109) #23 KCTD9 (ENSOCUG00000014099) #24 GNRH1 (ENSOCUG00000014093) #25 DOCK5 (ENSOCUG00000014056) #26 NEFL (ENSOCUG00000023836) #27 ENSOCUG00000021430 ADAM7 (ENSOCUG00000012104) #29 ADAMDEC1 (ENSOCUG00000001597) #30 ADAM28 (ENSOCUG00000004176) #31 ENSOCUG00000032289 ENSOCUG00000037834 ENSOCUG00000033833 STC1 (ENSOCUG00000005708) #32 NKX2-6 (ENSOCUG00000004296) #33 NKX3-1 (ENSOCUG00000004294) #34 Pika MODERN SPECIES 1234 ENSOPRG00000003599 #22 Rodentia ANCESTRAL SPECIES 21 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d Rodentia_B ANCESTRAL SPECIES 24 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Kangaroo rat MODERN SPECIES 506 Adra1a (ENSDORG00000005782) #15 Dpysl2 (ENSDORG00000023604) #16 Pnma2 (ENSDORG00000009340) #17 Bnip3l (ENSDORG00000028719) #19 Ppp2r2a (ENSDORG00000019723) #21 Ebf2 (ENSDORG00000019864) #22 ENSDORG00000007254 #23 Kctd9 (ENSDORG00000007253) #24 Gnrh1 (ENSDORG00000007251) #25 Dock5 (ENSDORG00000012003) #26 Nefl (ENSDORG00000025560) #27 ENSDORG00000027287 Adam7 (ENSDORG00000007281) #29 Adamdec1 (ENSDORG00000007279) #30 Adam28 (ENSDORG00000001473) #31 Stc1 (ENSDORG00000023767) #32 ENSDORG00000024859 #34 Slc25a37 (ENSDORG00000026005) #36 ENSDORG00000008983 Loxl2 (ENSDORG00000011153) R3hcc1 (ENSDORG00000026365) Myomorpha ANCESTRAL SPECIES 29 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Muroidea ANCESTRAL SPECIES 26 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Muroidea_A ANCESTRAL SPECIES 10 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a ENSGT01100000263540.B.d Cricetidae ANCESTRAL SPECIES 15 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a ENSGT01100000263540.B.d Cricetinae ANCESTRAL SPECIES 18 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a ENSGT01100000263540.B.d Chinese hamster chok1gshd MODERN SPECIES 3 Gulo (ENSCGRG00001019987) Adam2 (ENSCGRG00001012300) Ephx2 (ENSCGRG00001003555) #10 ENSCGRG00001003198 Chrna2 (ENSCGRG00001025060) #11 Ptk2b (ENSCGRG00001013042) #12 Trim35 (ENSCGRG00001019610) #13 ENSCGRG00001009280 Stmn4 (ENSCGRG00001008937) #14 Adra1a (ENSCGRG00001023093) #15 Dpysl2 (ENSCGRG00001016379) #16 ENSCGRG00001010421 Pnma2 (ENSCGRG00001010753) #17 Bnip3l (ENSCGRG00001021504) #19 Ppp2r2a (ENSCGRG00001015307) #21 Ebf2 (ENSCGRG00001001432) #22 Cdca2 (ENSCGRG00001022349) #23 Kctd9 (ENSCGRG00001022797) #24 Gnrh1 (ENSCGRG00001000327) #25 Dock5 (ENSCGRG00001021195) #26 Nefl (ENSCGRG00001016408) #27 ENSCGRG00001011263 #28 Adam7 (ENSCGRG00001010547) #29 Adamdec1 (ENSCGRG00001013228) #30 Adam28 (ENSCGRG00001009338) #31 Stc1 (ENSCGRG00001019183) #32 Nkx2-6 (ENSCGRG00001007878) #33 Nkx3-1 (ENSCGRG00001019912) #34 Slc25a37 (ENSCGRG00001008508) #36 Synb (ENSCGRG00001011259) ENSCGRG00001018845 Golden Hamster MODERN SPECIES 670 Ccdc25 (ENSMAUG00000018478) #7 Scara3 (ENSMAUG00000008370) #8 Clu (ENSMAUG00000001027) #9 Gulo (ENSMAUG00000013257) Adam2 (ENSMAUG00000021964) Ephx2 (ENSMAUG00000010745) #10 Chrna2 (ENSMAUG00000009044) #11 Ptk2b (ENSMAUG00000018808) #12 Trim35 (ENSMAUG00000010808) #13 Stmn4 (ENSMAUG00000012567) #14 Adra1a (ENSMAUG00000019248) #15 Dpysl2 (ENSMAUG00000006007) #16 ENSMAUG00000020770 Bnip3l (ENSMAUG00000007015) #19 Ppp2r2a (ENSMAUG00000019855) #21 Ebf2 (ENSMAUG00000015832) #22 Cdca2 (ENSMAUG00000011109) #23 Kctd9 (ENSMAUG00000012597) #24 Gnrh1 (ENSMAUG00000008244) #25 Dock5 (ENSMAUG00000008971) #26 ENSMAUG00000005425 #27 ENSMAUG00000017900 #28 Cricetidae_B ANCESTRAL SPECIES 11 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a Prairie vole MODERN SPECIES 4 Clu (ENSMOCG00000014457) #9 Gulo (ENSMOCG00000017457) Adam2 (ENSMOCG00000013262) Ephx2 (ENSMOCG00000022783) #10 Chrna2 (ENSMOCG00000019567) #11 Ptk2b (ENSMOCG00000004454) #12 Trim35 (ENSMOCG00000021886) #13 Stmn4 (ENSMOCG00000015586) #14 Adra1a (ENSMOCG00000018438) #15 Dpysl2 (ENSMOCG00000016303) #16 ENSMOCG00000006051 Pnma2 (ENSMOCG00000003712) #17 ENSMOCG00000018617 #19 Ppp2r2a (ENSMOCG00000011317) #21 ENSMOCG00000005189 Ebf2 (ENSMOCG00000007295) #22 Cdca2 (ENSMOCG00000002388) #23 Kctd9 (ENSMOCG00000016913) #24 Gnrh1 (ENSMOCG00000003491) #25 Dock5 (ENSMOCG00000009188) #26 Nefl (ENSMOCG00000012988) #27 ENSMOCG00000009013 #28 Adam7 (ENSMOCG00000022709) #29 Adamdec1 (ENSMOCG00000021493) #30 Adam28 (ENSMOCG00000010153) #31 Stc1 (ENSMOCG00000003351) #32 Nkx2-6 (ENSMOCG00000002130) #33 Nkx3-1 (ENSMOCG00000001078) #34 Slc25a37 (ENSMOCG00000000710) #36 Synb (ENSMOCG00000018779) ENSMOCG00000021822 Northern American deer mouse MODERN SPECIES 22 Ccdc25 (ENSPEMG00000021280) #7 Scara3 (ENSPEMG00000021066) #8 Clu (ENSPEMG00000021652) #9 Gulo (ENSPEMG00000021556) Adam2 (ENSPEMG00000021163) Ephx2 (ENSPEMG00000023642) #10 Chrna2 (ENSPEMG00000023959) #11 Ptk2b (ENSPEMG00000017057) #12 Trim35 (ENSPEMG00000030578) #13 Stmn4 (ENSPEMG00000021636) #14 Adra1a (ENSPEMG00000021686) #15 Dpysl2 (ENSPEMG00000021785) #16 Pnma2 (ENSPEMG00000025483) #17 ENSPEMG00000023103 #19 Ppp2r2a (ENSPEMG00000022593) #21 Ebf2 (ENSPEMG00000007776) #22 Cdca2 (ENSPEMG00000021129) #23 Kctd9 (ENSPEMG00000020895) #24 Gnrh1 (ENSPEMG00000030807) #25 Dock5 (ENSPEMG00000023361) #26 Nefl (ENSPEMG00000020765) #27 Nefm (ENSPEMG00000020646) Adam7 (ENSPEMG00000012803) #29 Adamdec1 (ENSPEMG00000004402) #30 Adam28 (ENSPEMG00000015520) #31 ENSPEMG00000030090 ENSPEMG00000027026 Stc1 (ENSPEMG00000027424) #32 Nkx2-6 (ENSPEMG00000005851) #33 Nkx3-1 (ENSPEMG00000026785) #34 Slc25a37 (ENSPEMG00000017275) #36 Murinae ANCESTRAL SPECIES 16 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a ENSGT01100000263540.B.d Mus ANCESTRAL SPECIES 8 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a ENSGT01100000263540.B.d Mus_A ANCESTRAL SPECIES 12 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT00860000136174 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a.y #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a ENSGT01100000263540.B.d Mus_B ANCESTRAL SPECIES 11 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT00860000136174 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a.y #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a ENSGT01100000263540.B.d Mouse MODERN SPECIES 5 Ccdc25 (ENSMUSG00000022035) #7 Scara3 (ENSMUSG00000034463) #8 Clu (ENSMUSG00000022037) #9 Gulo (ENSMUSG00000034450) Adam2 (ENSMUSG00000022039) Ephx2 (ENSMUSG00000022040) #10 Chrna2 (ENSMUSG00000022041) #11 Ptk2b (ENSMUSG00000059456) #12 Trim35 (ENSMUSG00000022043) #13 Stmn4 (ENSMUSG00000022044) #14 Adra1a (ENSMUSG00000045875) #15 Dpysl2 (ENSMUSG00000022048) #16 Pnma2 (ENSMUSG00000046204) #17 Bnip3l (ENSMUSG00000022051) #19 Ppp2r2a (ENSMUSG00000022052) #21 Ebf2 (ENSMUSG00000022053) #22 Cdca2 (ENSMUSG00000048922) #23 Kctd9 (ENSMUSG00000034327) #24 Gnrh1 (ENSMUSG00000015812) #25 Dock5 (ENSMUSG00000044447) #26 Nefm (ENSMUSG00000022054) Nefl (ENSMUSG00000022055) #27 Adam7 (ENSMUSG00000022056) #29 Adamdec1 (ENSMUSG00000022057) #30 Adam28 (ENSMUSG00000014725) #31 Stc1 (ENSMUSG00000014813) #32 Nkx2-6 (ENSMUSG00000044186) #33 Nkx3-1 (ENSMUSG00000022061) #34 Slc25a37 (ENSMUSG00000034248) #36 Synb (ENSMUSG00000047977) Entpd4 (ENSMUSG00000095463) Mus_C ANCESTRAL SPECIES 20 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT00860000136174 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00860000136257 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.p #19 ENSGT00950000182864.a.b.a.y #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000163436.n.a Steppe mouse MODERN SPECIES 3151 ENSMSIG00000018158 Clu (ENSMSIG00000018167) #9 Gulo (ENSMSIG00000018184) Adam2 (ENSMSIG00000018204) Ephx2 (ENSMSIG00000018278) #10 Chrna2 (ENSMSIG00000018435) #11 Ptk2b (ENSMSIG00000018459) #12 Trim35 (ENSMSIG00000018652) #13 Stmn4 (ENSMSIG00000018673) #14 Adra1a (ENSMSIG00000018756) #15 Dpysl2 (ENSMSIG00000018782) #16 ENSMSIG00000018813 Pnma2 (ENSMSIG00000018820) #17 Bnip3l (ENSMSIG00000018832) #19 Ppp2r2a (ENSMSIG00000018898) #21 Ebf2 (ENSMSIG00000019023) #22 ENSMSIG00000019073 ENSMSIG00000019082 spretus MODERN SPECIES 5 Clu (MGP_SPRETEiJ_G0020324) #9 Gulo (MGP_SPRETEiJ_G0020325) Adam2 (MGP_SPRETEiJ_G0020326) Ephx2 (MGP_SPRETEiJ_G0020327) #10 Chrna2 (MGP_SPRETEiJ_G0020328) #11 Ptk2b (MGP_SPRETEiJ_G0020329) #12 Trim35 (MGP_SPRETEiJ_G0020330) #13 Stmn4 (MGP_SPRETEiJ_G0020331) #14 Adra1a (MGP_SPRETEiJ_G0020332) #15 MGP_SPRETEiJ_G0020333 Dpysl2 (MGP_SPRETEiJ_G0020334) #16 MGP_SPRETEiJ_G0020335 Pnma2 (MGP_SPRETEiJ_G0020336) #17 Bnip3l (MGP_SPRETEiJ_G0020337) #19 Ppp2r2a (MGP_SPRETEiJ_G0020338) #21 Ebf2 (MGP_SPRETEiJ_G0020339) #22 Cdca2 (MGP_SPRETEiJ_G0020340) #23 Kctd9 (MGP_SPRETEiJ_G0020341) #24 Gnrh1 (MGP_SPRETEiJ_G0020342) #25 Dock5 (MGP_SPRETEiJ_G0020343) #26 Nefm (MGP_SPRETEiJ_G0020344) Nefl (MGP_SPRETEiJ_G0020345) #27 Adam7 (MGP_SPRETEiJ_G0020346) #29 Adamdec1 (MGP_SPRETEiJ_G0020347) #30 Adam28 (MGP_SPRETEiJ_G0020348) #31 Stc1 (MGP_SPRETEiJ_G0020349) #32 Nkx2-6 (MGP_SPRETEiJ_G0020350) #33 Nkx3-1 (MGP_SPRETEiJ_G0020351) #34 Slc25a37 (MGP_SPRETEiJ_G0020352) #36 MGP_SPRETEiJ_G0020354 MGP_SPRETEiJ_G0020355 Ryukyu mouse MODERN SPECIES 5 Clu (MGP_CAROLIEiJ_G0019432) #9 Gulo (MGP_CAROLIEiJ_G0019433) Adam2 (MGP_CAROLIEiJ_G0019434) Ephx2 (MGP_CAROLIEiJ_G0019435) #10 Chrna2 (MGP_CAROLIEiJ_G0019436) #11 Ptk2b (MGP_CAROLIEiJ_G0019437) #12 Trim35 (MGP_CAROLIEiJ_G0019438) #13 Stmn4 (MGP_CAROLIEiJ_G0019439) #14 Adra1a (MGP_CAROLIEiJ_G0019440) #15 MGP_CAROLIEiJ_G0019441 Dpysl2 (MGP_CAROLIEiJ_G0019442) #16 MGP_CAROLIEiJ_G0019443 Pnma2 (MGP_CAROLIEiJ_G0019444) #17 Bnip3l (MGP_CAROLIEiJ_G0019445) #19 MGP_CAROLIEiJ_G0019446 #21 Ebf2 (MGP_CAROLIEiJ_G0019447) #22 Cdca2 (MGP_CAROLIEiJ_G0019448) #23 Kctd9 (MGP_CAROLIEiJ_G0019449) #24 Gnrh1 (MGP_CAROLIEiJ_G0019450) #25 Dock5 (MGP_CAROLIEiJ_G0019451) #26 Nefm (MGP_CAROLIEiJ_G0019452) Nefl (MGP_CAROLIEiJ_G0019453) #27 Adam7 (MGP_CAROLIEiJ_G0019454) #29 Adamdec1 (MGP_CAROLIEiJ_G0019455) #30 Adam28 (MGP_CAROLIEiJ_G0019456) #31 Stc1 (MGP_CAROLIEiJ_G0019457) #32 Nkx2-6 (MGP_CAROLIEiJ_G0019458) #33 Nkx3-1 (MGP_CAROLIEiJ_G0019459) #34 Slc25a37 (MGP_CAROLIEiJ_G0019460) #36 MGP_CAROLIEiJ_G0019461 MGP_CAROLIEiJ_G0019462 Shrew mouse MODERN SPECIES 21 Ccdc25 (MGP_PahariEiJ_G0030448) #7 Scara3 (MGP_PahariEiJ_G0030449) #8 Clu (MGP_PahariEiJ_G0030450) #9 Gulo (MGP_PahariEiJ_G0030451) Adam2 (MGP_PahariEiJ_G0030452) Ephx2 (MGP_PahariEiJ_G0030453) #10 Chrna2 (MGP_PahariEiJ_G0030454) #11 Ptk2b (MGP_PahariEiJ_G0030455) #12 Trim35 (MGP_PahariEiJ_G0030456) #13 Stmn4 (MGP_PahariEiJ_G0030457) #14 Adra1a (MGP_PahariEiJ_G0030458) #15 Dpysl2 (MGP_PahariEiJ_G0030459) #16 MGP_PahariEiJ_G0030460 Bnip3l (MGP_PahariEiJ_G0030462) #19 Ppp2r2a (MGP_PahariEiJ_G0030463) #21 Ebf2 (MGP_PahariEiJ_G0030464) #22 Cdca2 (MGP_PahariEiJ_G0030465) #23 Kctd9 (MGP_PahariEiJ_G0030466) #24 Gnrh1 (MGP_PahariEiJ_G0030467) #25 Dock5 (MGP_PahariEiJ_G0030468) #26 Nefm (MGP_PahariEiJ_G0030469) Nefl (MGP_PahariEiJ_G0030470) #27 Adam7 (MGP_PahariEiJ_G0030471) #29 Adamdec1 (MGP_PahariEiJ_G0030472) #30 Adam28 (MGP_PahariEiJ_G0030473) #31 Stc1 (MGP_PahariEiJ_G0030474) #32 MGP_PahariEiJ_G0030475 #33 Nkx3-1 (MGP_PahariEiJ_G0030476) #34 Slc25a37 (MGP_PahariEiJ_G0030477) #36 MGP_PahariEiJ_G0030478 MGP_PahariEiJ_G0030479 Rat MODERN SPECIES 6 Ccdc25 (ENSRNOG00000015939) #7 Scara3 (ENSRNOG00000016177) #8 Clu (ENSRNOG00000016460) #9 Gulo (ENSRNOG00000016648) Adam2 (ENSRNOG00000017027) Ephx2 (ENSRNOG00000017286) #10 Chrna2 (ENSRNOG00000017424) #11 Ptk2b (ENSRNOG00000027839) #12 Trim35 (ENSRNOG00000009449) #13 Stmn4 (ENSRNOG00000053334) #14 Adra1a (ENSRNOG00000009522) #15 Dpysl2 (ENSRNOG00000009625) #16 Pnma2 (ENSRNOG00000009815) #17 Bnip3l (ENSRNOG00000009820) #19 Ppp2r2a (ENSRNOG00000011158) #21 Ebf2 (ENSRNOG00000011548) #22 Cdca2 (ENSRNOG00000025302) #23 Gnrh1 (ENSRNOG00000066847) #25 Kctd9 (ENSRNOG00000012951) #24 Gnrh1 (ENSRNOG00000013433) Dock5 (ENSRNOG00000024703) #26 LOC120097172 (ENSRNOG00000031532) Nefl (ENSRNOG00000013658) #27 Nefm (ENSRNOG00000013916) #28 Adam7 (ENSRNOG00000014054) #29 Adamdec1 (ENSRNOG00000030724) #30 Adam28 (ENSRNOG00000014518) #31 ENSRNOG00000063586 #31 AABR07018269.1 (ENSRNOG00000031720) ENSRNOG00000063939 ENSRNOG00000067366 Upper Galilee mountains blind mole rat MODERN SPECIES 739 Adra1a (ENSNGAG00000013950) #15 Dpysl2 (ENSNGAG00000024011) #16 ENSNGAG00000022123 #19 Ppp2r2a (ENSNGAG00000023568) #21 Ebf2 (ENSNGAG00000019824) #22 Cdca2 (ENSNGAG00000015418) #23 Kctd9 (ENSNGAG00000023863) #24 Gnrh1 (ENSNGAG00000018104) #25 Dock5 (ENSNGAG00000023947) #26 ENSNGAG00000022190 ENSNGAG00000021748 Lesser Egyptian jerboa MODERN SPECIES 125 ENSJJAG00000016351 #7 Scara3 (ENSJJAG00000015535) #8 Clu (ENSJJAG00000011133) #9 Gulo (ENSJJAG00000008997) Adam2 (ENSJJAG00000021729) Ephx2 (ENSJJAG00000021412) #10 Chrna2 (ENSJJAG00000018111) #11 Ptk2b (ENSJJAG00000013115) #12 Trim35 (ENSJJAG00000011832) #13 ENSJJAG00000011170 Stmn4 (ENSJJAG00000010283) #14 Adra1a (ENSJJAG00000008597) #15 Dpysl2 (ENSJJAG00000021965) #16 ENSJJAG00000021430 #19 Ppp2r2a (ENSJJAG00000020800) #21 Ebf2 (ENSJJAG00000018635) #22 ENSJJAG00000016051 #23 Kctd9 (ENSJJAG00000014248) #24 Gnrh1 (ENSJJAG00000013753) #25 Dock5 (ENSJJAG00000012658) #26 Nefl (ENSJJAG00000011034) #27 Nefm (ENSJJAG00000018709) Adam7 (ENSJJAG00000016655) #29 Adamdec1 (ENSJJAG00000015285) #30 Adam28 (ENSJJAG00000014433) #31 Stc1 (ENSJJAG00000013494) #32 Nkx2-6 (ENSJJAG00000013412) #33 Nkx3-1 (ENSJJAG00000013332) #34 ENSJJAG00000012211 Slc25a37 (ENSJJAG00000012106) #36 ENSJJAG00000010447 Rodentia_A ANCESTRAL SPECIES 21 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d Sciuridae ANCESTRAL SPECIES 29 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.j #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Marmotini ANCESTRAL SPECIES 30 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.j #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00940000159453.e.b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Marmotini_b ANCESTRAL SPECIES 241 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314.j #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a Arctic ground squirrel MODERN SPECIES 498 PNMA2 (ENSUPAG00010022624) #17 BNIP3L (ENSUPAG00010022623) #19 PPP2R2A (ENSUPAG00010022619) #21 EBF2 (ENSUPAG00010022616) #22 CDCA2 (ENSUPAG00010022612) #23 KCTD9 (ENSUPAG00010022608) #24 GNRH1 (ENSUPAG00010022605) #25 DOCK5 (ENSUPAG00010022602) #26 Squirrel MODERN SPECIES 357 ADRA1A (ENSSTOG00000019888) #15 DPYSL2 (ENSSTOG00000004052) #16 BNIP3L (ENSSTOG00000004029) #19 PPP2R2A (ENSSTOG00000023339) #21 EBF2 (ENSSTOG00000007966) #22 CDCA2 (ENSSTOG00000008812) #23 KCTD9 (ENSSTOG00000008797) #24 GNRH1 (ENSSTOG00000008794) #25 DOCK5 (ENSSTOG00000008718) #26 NEFL (ENSSTOG00000019640) #27 NEFM (ENSSTOG00000019862) #28 Alpin marmot MODERN SPECIES 61 SCARA3 (ENSMMMG00000013090) #8 CLU (ENSMMMG00000013091) #9 ENSMMMG00000013102 ADAM2 (ENSMMMG00000013126) EPHX2 (ENSMMMG00000013154) #10 ENSMMMG00000013222 #11 PTK2B (ENSMMMG00000013250) #12 ENSMMMG00000013471 #13 STMN4 (ENSMMMG00000013482) #14 ADRA1A (ENSMMMG00000013560) #15 DPYSL2 (ENSMMMG00000013573) #16 PNMA2 (ENSMMMG00000013583) #17 BNIP3L (ENSMMMG00000013590) #19 PPP2R2A (ENSMMMG00000013593) #21 ENSMMMG00000013633 EBF2 (ENSMMMG00000013647) #22 ENSMMMG00000013653 CDCA2 (ENSMMMG00000013660) #23 KCTD9 (ENSMMMG00000013722) #24 ENSMMMG00000013769 GNRH1 (ENSMMMG00000013776) #25 DOCK5 (ENSMMMG00000013783) #26 ENSMMMG00000013835 NEFL (ENSMMMG00000013840) #27 ENSMMMG00000013849 ADAM7 (ENSMMMG00000013881) #29 ADAMDEC1 (ENSMMMG00000013904) #30 ADAM28 (ENSMMMG00000013926) #31 ENSMMMG00000013954 STC1 (ENSMMMG00000013958) #32 NKX2-6 (ENSMMMG00000013962) #33 Eurasian red squirrel MODERN SPECIES 14 CLU (ENSSVLG00005002257) #9 ENSSVLG00005002289 ADAM2 (ENSSVLG00005002341) EPHX2 (ENSSVLG00005002467) #10 CHRNA2 (ENSSVLG00005002577) #11 PTK2B (ENSSVLG00005002627) #12 ENSSVLG00005002776 TRIM35 (ENSSVLG00005002788) #13 STMN4 (ENSSVLG00005002831) #14 ZFP57 (ENSSVLG00005002906) ADRA1A (ENSSVLG00005002931) #15 DPYSL2 (ENSSVLG00005002961) #16 PNMA2 (ENSSVLG00005003028) #17 ENSSVLG00005003040 #19 ENSSVLG00005003080 #21 EBF2 (ENSSVLG00005003172) #22 CDCA2 (ENSSVLG00005003275) #23 KCTD9 (ENSSVLG00005003331) #24 GNRH1 (ENSSVLG00005003367) #25 DOCK5 (ENSSVLG00005003397) #26 ENSSVLG00005003428 ENSSVLG00005003443 NEFL (ENSSVLG00005003461) #27 NEFM (ENSSVLG00005003494) #28 ADAM7 (ENSSVLG00005003562) #29 ADAMDEC1 (ENSSVLG00005003660) #30 ADAM28 (ENSSVLG00005003701) #31 STC1 (ENSSVLG00005003730) #32 NKX2-6 (ENSSVLG00005003752) #33 NKX3-1 (ENSSVLG00005003772) #34 SLC25A37 (ENSSVLG00005003790) #36 Hystricomorpha ANCESTRAL SPECIES 21 ENSGT00940000158598 ENSGT00390000004380.p #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d Naked mole-rat female MODERN SPECIES 25 EPHX2 (ENSHGLG00000005581) #10 CHRNA2 (ENSHGLG00000004833) #11 PTK2B (ENSHGLG00000015272) #12 TRIM35 (ENSHGLG00000034100) #13 STMN4 (ENSHGLG00000016773) #14 ENSHGLG00000045878 ADRA1A (ENSHGLG00000009186) #15 ENSHGLG00000048177 ENSHGLG00000046165 DPYSL2 (ENSHGLG00000005797) #16 PNMA2 (ENSHGLG00000045190) #17 ENSHGLG00000044794 BNIP3L (ENSHGLG00000041171) #19 ENSHGLG00000009150 #21 ENSHGLG00000045544 ENSHGLG00000004897 #22 ENSHGLG00000010256 CDCA2 (ENSHGLG00000037894) #23 ENSHGLG00000036572 ENSHGLG00000018824 #24 GNRH1 (ENSHGLG00000017902) #25 DOCK5 (ENSHGLG00000017514) #26 ENSHGLG00000050046 NEFL (ENSHGLG00000017653) #27 ENSHGLG00000019352 ENSHGLG00000036278 ADAM7 (ENSHGLG00000017673) #29 ADAMDEC1 (ENSHGLG00000011872) #30 ADAM28 (ENSHGLG00000018858) #31 ENSHGLG00000040240 STC1 (ENSHGLG00000040196) #32 Hystricomorpha_a ANCESTRAL SPECIES 20 ENSGT00940000158598 ENSGT00390000004380.p #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Guinea pig MODERN SPECIES 1 PBK (ENSCPOG00000010826) ESCO2 (ENSCPOG00000024189) CCDC25 (ENSCPOG00000038303) #7 SCARA3 (ENSCPOG00000034540) #8 CLU (ENSCPOG00000019546) #9 ADAM2 (ENSCPOG00000022133) EPHX2 (ENSCPOG00000037609) #10 CHRNA2 (ENSCPOG00000038123) #11 PTK2B (ENSCPOG00000004602) #12 TRIM35 (ENSCPOG00000032287) #13 STMN4 (ENSCPOG00000005528) #14 ADRA1A (ENSCPOG00000038399) #15 DPYSL2 (ENSCPOG00000025679) #16 BNIP3L (ENSCPOG00000034680) #19 PPP2R2A (ENSCPOG00000026784) #21 EBF2 (ENSCPOG00000001463) #22 CDCA2 (ENSCPOG00000036890) #23 KCTD9 (ENSCPOG00000015540) #24 GNRH1 (ENSCPOG00000015538) #25 DOCK5 (ENSCPOG00000015533) #26 NEFL (ENSCPOG00000023838) #27 ENSCPOG00000027410 ADAM7 (ENSCPOG00000001538) #29 ADAMDEC1 (ENSCPOG00000038140) #30 ADAM28 (ENSCPOG00000009707) #31 STC1 (ENSCPOG00000034351) #32 NKX3-1 (ENSCPOG00000040229) #34 SLC25A37 (ENSCPOG00000035237) #36 ENTPD4 (ENSCPOG00000009705) LOXL2 (ENSCPOG00000009701) R3HCC1 (ENSCPOG00000009696) Hystricomorpha_b ANCESTRAL SPECIES 30 ENSGT00940000158598 ENSGT00390000004380.p #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000161961 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Degu MODERN SPECIES 77 CLU (ENSODEG00000007758) #9 ENSODEG00000012794 ADAM2 (ENSODEG00000008302) EPHX2 (ENSODEG00000007405) #10 CHRNA2 (ENSODEG00000008004) #11 PTK2B (ENSODEG00000009950) #12 TRIM35 (ENSODEG00000008434) #13 STMN4 (ENSODEG00000006658) #14 ENSODEG00000010902 ADRA1A (ENSODEG00000007554) #15 DPYSL2 (ENSODEG00000007667) #16 ENSODEG00000007526 ENSODEG00000007362 #19 ENSODEG00000006781 #21 ENSODEG00000007854 EBF2 (ENSODEG00000007640) #22 ENSODEG00000006905 ENSODEG00000007418 #23 KCTD9 (ENSODEG00000008616) #24 GNRH1 (ENSODEG00000007834) #25 DOCK5 (ENSODEG00000007523) #26 NEFL (ENSODEG00000007183) #27 NEFM (ENSODEG00000008392) #28 ENSODEG00000007521 ADAM7 (ENSODEG00000007547) #29 ADAMDEC1 (ENSODEG00000008034) #30 ADAM28 (ENSODEG00000007875) #31 STC1 (ENSODEG00000007382) #32 NKX2-6 (ENSODEG00000007413) #33 NKX3-1 (ENSODEG00000007004) #34 SLC25A37 (ENSODEG00000007363) #36 Long-tailed chinchilla MODERN SPECIES 110 ESCO2 (ENSCLAG00000017015) CCDC25 (ENSCLAG00000013927) #7 SCARA3 (ENSCLAG00000016246) #8 CLU (ENSCLAG00000014457) #9 ENSCLAG00000014336 ADAM2 (ENSCLAG00000014916) EPHX2 (ENSCLAG00000014569) #10 CHRNA2 (ENSCLAG00000016813) #11 PTK2B (ENSCLAG00000015285) #12 TRIM35 (ENSCLAG00000014327) #13 STMN4 (ENSCLAG00000014584) #14 ADRA1A (ENSCLAG00000014689) #15 DPYSL2 (ENSCLAG00000015960) #16 BNIP3L (ENSCLAG00000016223) #19 PPP2R2A (ENSCLAG00000013984) #21 EBF2 (ENSCLAG00000013500) #22 CDCA2 (ENSCLAG00000011981) #23 KCTD9 (ENSCLAG00000013948) #24 GNRH1 (ENSCLAG00000014234) #25 DOCK5 (ENSCLAG00000015174) #26 NEFL (ENSCLAG00000014935) #27 ENSCLAG00000013799 ADAM7 (ENSCLAG00000013174) #29 ENSCLAG00000015375 #30 ADAM28 (ENSCLAG00000016310) #31 ENSCLAG00000015807 STC1 (ENSCLAG00000014786) #32 NKX2-6 (ENSCLAG00000014720) #33 NKX3-1 (ENSCLAG00000013957) #34 SLC25A37 (ENSCLAG00000014235) #36 ENTPD4 (ENSCLAG00000013899) Laurasiatheria ANCESTRAL SPECIES 24 ENSGT00950000185082 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Eulipotyphla ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.b #22 Common shrew MODERN SPECIES 2280 EBF2 (ENSSARG00000012320) #22 Laurasiatheria_a ANCESTRAL SPECIES 8 ENSGT00950000185082 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Artiodactyla ANCESTRAL SPECIES 7 ENSGT00950000185082 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Suina ANCESTRAL SPECIES 42 ENSGT00950000185082 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Chacoan peccary MODERN SPECIES 813 ESCO2 (ENSCWAG00000009108) CCDC25 (ENSCWAG00000009241) #7 SCARA3 (ENSCWAG00000009341) #8 CLU (ENSCWAG00000009499) #9 ENSCWAG00000009543 EPHX2 (ENSCWAG00000009691) #10 CHRNA2 (ENSCWAG00000010830) #11 PTK2B (ENSCWAG00000011805) #12 TRIM35 (ENSCWAG00000011889) #13 STMN4 (ENSCWAG00000011950) #14 ADRA1A (ENSCWAG00000012091) #15 DPYSL2 (ENSCWAG00000012142) #16 PNMA2 (ENSCWAG00000012323) #17 BNIP3L (ENSCWAG00000012345) #19 PPP2R2A (ENSCWAG00000012404) #21 EBF2 (ENSCWAG00000012599) #22 CDCA2 (ENSCWAG00000012969) #23 KCTD9 (ENSCWAG00000013249) #24 GNRH1 (ENSCWAG00000013307) #25 DOCK5 (ENSCWAG00000013368) #26 NEFL (ENSCWAG00000013873) #27 ENSCWAG00000013920 ADAM7 (ENSCWAG00000013998) #29 ADAMDEC1 (ENSCWAG00000014486) #30 ADAM28 (ENSCWAG00000014725) #31 STC1 (ENSCWAG00000014909) #32 NKX2-6 (ENSCWAG00000014986) #33 NKX3-1 (ENSCWAG00000015012) #34 SLC25A37 (ENSCWAG00000015044) #36 ENTPD4 (ENSCWAG00000015072) LOXL2 (ENSCWAG00000015127) Pig MODERN SPECIES 5 ENSSSCG00000050594 CCDC25 (ENSSSCG00000024972) #7 SCARA3 (ENSSSCG00000020846) #8 CLU (ENSSSCG00000009668) #9 ENSSSCG00000009667 EPHX2 (ENSSSCG00000009666) #10 CHRNA2 (ENSSSCG00000009665) #11 PTK2B (ENSSSCG00000009664) #12 TRIM35 (ENSSSCG00000033325) #13 STMN4 (ENSSSCG00000009662) #14 ADRA1A (ENSSSCG00000009661) #15 DPYSL2 (ENSSSCG00000030130) #16 PNMA2 (ENSSSCG00000009659) #17 BNIP3L (ENSSSCG00000009658) #19 PPP2R2A (ENSSSCG00000009657) #21 EBF2 (ENSSSCG00000009655) #22 ENSSSCG00000042774 CDCA2 (ENSSSCG00000009653) #23 KCTD9 (ENSSSCG00000009652) #24 GNRH1 (ENSSSCG00000009651) #25 DOCK5 (ENSSSCG00000009650) #26 NEFL (ENSSSCG00000009649) #27 ENSSSCG00000009648 ENSSSCG00000060373 ENSSSCG00000057307 ADAM7 (ENSSSCG00000009646) #29 ADAMDEC1 (ENSSSCG00000009645) #30 ADAM28 (ENSSSCG00000009644) #31 STC1 (ENSSSCG00000009642) #32 NKX2-6 (ENSSSCG00000028064) #33 NKX3-1 (ENSSSCG00000031924) #34 Artiodactyla_a ANCESTRAL SPECIES 6 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Camelidae ANCESTRAL SPECIES 47 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00720000108860 Alpaca MODERN SPECIES 2917 BNIP3L (ENSVPAG00000000509) #19 PPP2R2A (ENSVPAG00000015429) #21 EBF2 (ENSVPAG00000015422) #22 Arabian camel MODERN SPECIES 24 SCARA3 (ENSCDRG00005019603) #8 CLU (ENSCDRG00005019585) #9 ENSCDRG00005019569 EPHX2 (ENSCDRG00005019465) #10 CHRNA2 (ENSCDRG00005019402) #11 PTK2B (ENSCDRG00005019294) #12 TRIM35 (ENSCDRG00005019253) #13 STMN4 (ENSCDRG00005019200) #14 ENSCDRG00005019174 ADRA1A (ENSCDRG00005019146) #15 DPYSL2 (ENSCDRG00005018995) #16 PNMA2 (ENSCDRG00005018959) #17 BNIP3L (ENSCDRG00005018890) #19 PPP2R2A (ENSCDRG00005018721) #21 ENSCDRG00005018693 EBF2 (ENSCDRG00005018634) #22 CDCA2 (ENSCDRG00005018503) #23 KCTD9 (ENSCDRG00005018455) #24 GNRH1 (ENSCDRG00005018431) #25 DOCK5 (ENSCDRG00005018165) #26 NEFL (ENSCDRG00005018138) #27 ENSCDRG00005018075 ADAM7 (ENSCDRG00005017257) #29 ADAM28 (ENSCDRG00005016471) #31 STC1 (ENSCDRG00005016415) #32 ENSCDRG00005016389 #33 NKX3-1 (ENSCDRG00005016364) #34 SLC25A37 (ENSCDRG00005016317) #36 ENTPD4 (ENSCDRG00005016214) LOXL2 (ENSCDRG00005016177) R3HCC1 (ENSCDRG00005016059) Artiodactyla_b ANCESTRAL SPECIES 7 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Cetacea ANCESTRAL SPECIES 9 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00390000006350.m.a.c.b.a.b ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Odontoceti ANCESTRAL SPECIES 8 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00390000006350.m.a.c.b.a.b ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Odontoceti_a ANCESTRAL SPECIES 15 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00390000006350.m.a.c.b.a.b ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Odontoceti_b ANCESTRAL SPECIES 8 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00390000006350.m.a.c.b.a.b ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000183010.a.b.a.a.a.a.a.b.b.d ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Monodontidae ANCESTRAL SPECIES 5 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00390000006350.m.a.c.b.a.b ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000183010.a.b.a.a.a.a.a.b.b.d ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01010000228881 ENSGT01100000263540.B.d Narwhal MODERN SPECIES 312 SCARA3 (ENSMMNG00015017508) #8 CLU (ENSMMNG00015017554) #9 ENSMMNG00015017581 EPHX2 (ENSMMNG00015017668) #10 ENSMMNG00015017835 CHRNA2 (ENSMMNG00015017861) #11 PTK2B (ENSMMNG00015017976) #12 TRIM35 (ENSMMNG00015018089) #13 STMN4 (ENSMMNG00015018331) #14 ADRA1A (ENSMMNG00015018492) #15 DPYSL2 (ENSMMNG00015018544) #16 PNMA2 (ENSMMNG00015018639) #17 BNIP3L (ENSMMNG00015018649) #19 PPP2R2A (ENSMMNG00015018714) #21 ENSMMNG00015018827 EBF2 (ENSMMNG00015018863) #22 CDCA2 (ENSMMNG00015018900) #23 KCTD9 (ENSMMNG00015019003) #24 GNRH1 (ENSMMNG00015019060) #25 DOCK5 (ENSMMNG00015019103) #26 NEFL (ENSMMNG00015019153) #27 ENSMMNG00015019196 ENSMMNG00015019249 #29 ADAMDEC1 (ENSMMNG00015019319) #30 ADAM28 (ENSMMNG00015019400) #31 STC1 (ENSMMNG00015019502) #32 NKX2-6 (ENSMMNG00015019533) #33 ENSMMNG00015019551 SLC25A37 (ENSMMNG00015019590) #36 ENSMMNG00015019603 ENSMMNG00015019619 Beluga whale MODERN SPECIES 4 SCARA3 (ENSDLEG00000000924) #8 CLU (ENSDLEG00000000957) #9 ENSDLEG00000000969 EPHX2 (ENSDLEG00000001005) #10 ENSDLEG00000001060 CHRNA2 (ENSDLEG00000001068) #11 PTK2B (ENSDLEG00000001086) #12 TRIM35 (ENSDLEG00000001119) #13 STMN4 (ENSDLEG00000001142) #14 ADRA1A (ENSDLEG00000001167) #15 DPYSL2 (ENSDLEG00000001186) #16 PNMA2 (ENSDLEG00000001239) #17 BNIP3L (ENSDLEG00000001250) #19 PPP2R2A (ENSDLEG00000001272) #21 ENSDLEG00000001289 EBF2 (ENSDLEG00000001316) #22 ENSDLEG00000001380 CDCA2 (ENSDLEG00000001385) #23 KCTD9 (ENSDLEG00000001415) #24 GNRH1 (ENSDLEG00000001435) #25 DOCK5 (ENSDLEG00000002343) #26 ENSDLEG00000006462 NEFL (ENSDLEG00000006467) #27 NEFM (ENSDLEG00000006476) #28 ADAM28 (ENSDLEG00000006489) #31 STC1 (ENSDLEG00000006517) #32 ENSDLEG00000006522 #33 NKX3-1 (ENSDLEG00000006531) #34 SLC25A37 (ENSDLEG00000006540) #36 ENSDLEG00000006543 ENTPD4 (ENSDLEG00000006555) Vaquita MODERN SPECIES 17 ESCO2 (ENSPSNG00000012224) CCDC25 (ENSPSNG00000012132) #7 SCARA3 (ENSPSNG00000011999) #8 CLU (ENSPSNG00000011914) #9 ENSPSNG00000011878 CHRNA2 (ENSPSNG00000011813) #11 PTK2B (ENSPSNG00000011703) #12 TRIM35 (ENSPSNG00000011632) #13 STMN4 (ENSPSNG00000011305) #14 ADRA1A (ENSPSNG00000011198) #15 DPYSL2 (ENSPSNG00000010930) #16 PNMA2 (ENSPSNG00000010857) #17 BNIP3L (ENSPSNG00000010778) #19 PPP2R2A (ENSPSNG00000010594) #21 ENSPSNG00000010536 EBF2 (ENSPSNG00000010256) #22 ENSPSNG00000010228 ENSPSNG00000010183 CDCA2 (ENSPSNG00000009875) #23 KCTD9 (ENSPSNG00000009803) #24 GNRH1 (ENSPSNG00000004028) #25 ENSPSNG00000003996 ENSPSNG00000003965 NEFL (ENSPSNG00000003946) #27 ENSPSNG00000003914 ADAMDEC1 (ENSPSNG00000003873) #30 ADAM28 (ENSPSNG00000003790) #31 STC1 (ENSPSNG00000003726) #32 NKX2-6 (ENSPSNG00000003713) #33 NKX3-1 (ENSPSNG00000003693) #34 ENSPSNG00000003682 Dolphin MODERN SPECIES 2887 EBF2 (ENSTTRG00000021467) #22 Sperm whale MODERN SPECIES 20 PBK (ENSPCTG00005002003) ESCO2 (ENSPCTG00005001985) CCDC25 (ENSPCTG00005001956) #7 ENSPCTG00005001945 EPHX2 (ENSPCTG00005001921) #10 CHRNA2 (ENSPCTG00005001881) #11 PTK2B (ENSPCTG00005001853) #12 TRIM35 (ENSPCTG00005001833) #13 STMN4 (ENSPCTG00005001782) #14 ENSPCTG00005001739 ADRA1A (ENSPCTG00005001727) #15 DPYSL2 (ENSPCTG00005001664) #16 PNMA2 (ENSPCTG00005001626) #17 BNIP3L (ENSPCTG00005001600) #19 PPP2R2A (ENSPCTG00005001540) #21 EBF2 (ENSPCTG00005001486) #22 ENSPCTG00005001468 CDCA2 (ENSPCTG00005001413) #23 KCTD9 (ENSPCTG00005001337) #24 GNRH1 (ENSPCTG00005001298) #25 DOCK5 (ENSPCTG00005001083) #26 NEFL (ENSPCTG00005001011) #27 NEFM (ENSPCTG00005000983) #28 ENSPCTG00005000957 ADAM7 (ENSPCTG00005000905) #29 ADAMDEC1 (ENSPCTG00005000843) #30 ADAM28 (ENSPCTG00005000741) #31 STC1 (ENSPCTG00005000557) #32 NKX2-6 (ENSPCTG00005000444) #33 NKX3-1 (ENSPCTG00005015538) #34 ENSPCTG00005015478 Blue whale MODERN SPECIES 17 CCDC25 (ENSBMSG00010000771) #7 SCARA3 (ENSBMSG00010000815) #8 CLU (ENSBMSG00010000855) #9 ENSBMSG00010000884 EPHX2 (ENSBMSG00010000918) #10 ENSBMSG00010000956 CHRNA2 (ENSBMSG00010000975) #11 PTK2B (ENSBMSG00010001018) #12 TRIM35 (ENSBMSG00010001057) #13 STMN4 (ENSBMSG00010001170) #14 ADRA1A (ENSBMSG00010001276) #15 DPYSL2 (ENSBMSG00010001313) #16 PNMA2 (ENSBMSG00010001359) #17 ENSBMSG00010001374 #19 PPP2R2A (ENSBMSG00010001403) #21 EBF2 (ENSBMSG00010001470) #22 CDCA2 (ENSBMSG00010001504) #23 KCTD9 (ENSBMSG00010001525) #24 GNRH1 (ENSBMSG00010001589) #25 DOCK5 (ENSBMSG00010001626) #26 NEFL (ENSBMSG00010001677) #27 NEFM (ENSBMSG00010001692) #28 ENSBMSG00010001706 ENSBMSG00010001750 #29 ADAMDEC1 (ENSBMSG00010001768) #30 ENSBMSG00010001817 #31 STC1 (ENSBMSG00010001852) #32 NKX2-6 (ENSBMSG00010001859) #33 NKX3-1 (ENSBMSG00010001867) #34 SLC25A37 (ENSBMSG00010001881) #36 ENSBMSG00010001888 Pecora ANCESTRAL SPECIES 36 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00940000154172.`b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Percora_a ANCESTRAL SPECIES 24 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00940000154172.`b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Bovidae ANCESTRAL SPECIES 14 ENSGT00940000156806 ENSGT00530000063668.B.b #9 ENSGT00530000065109.h ENSGT00510000048121.j ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00940000154172.`b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Caprinae ANCESTRAL SPECIES 14 ENSGT00940000153558.b.i.b.a.a.h ENSGT00940000156806 ENSGT00530000063668.B.b #9 ENSGT00530000065109.h ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Goat MODERN SPECIES 27 APTX (ENSCHIG00000012896) ENSCHIG00000020043 #9 ENSCHIG00000026235 ENSCHIG00000015473 ENSCHIG00000008405 EPHX2 (ENSCHIG00000007111) #10 CHRNA2 (ENSCHIG00000018927) #11 PTK2B (ENSCHIG00000026234) #12 TRIM35 (ENSCHIG00000009723) #13 STMN4 (ENSCHIG00000020412) #14 ADRA1A (ENSCHIG00000021001) #15 DPYSL2 (ENSCHIG00000026845) #16 PNMA2 (ENSCHIG00000002000) #17 ENSCHIG00000024818 #19 PPP2R2A (ENSCHIG00000007473) #21 EBF2 (ENSCHIG00000023729) #22 CDCA2 (ENSCHIG00000018580) #23 KCTD9 (ENSCHIG00000015791) #24 GNRH1 (ENSCHIG00000016406) #25 DOCK5 (ENSCHIG00000001085) #26 NEFL (ENSCHIG00000011951) #27 NEFM (ENSCHIG00000019945) #28 ADAM7 (ENSCHIG00000015652) #29 ADAMDEC1 (ENSCHIG00000015701) #30 ADAM28 (ENSCHIG00000024308) #31 ENSCHIG00000012581 STC1 (ENSCHIG00000010708) #32 NKX2-6 (ENSCHIG00000023290) #33 NKX3-1 (ENSCHIG00000010463) #34 ENSCHIG00000009620 ENSCHIG00000010457 Rambouillet Sheep MODERN SPECIES 11 APTX (ENSOARG00020011077) ENSOARG00020011544 #9 ENSOARG00020011616 ENSOARG00020011644 EPHX2 (ENSOARG00020011756) #10 CHRNA2 (ENSOARG00020011996) #11 PTK2B (ENSOARG00020012073) #12 TRIM35 (ENSOARG00020012904) #13 STMN4 (ENSOARG00020013017) #14 ADRA1A (ENSOARG00020013199) #15 ENSOARG00020013277 DPYSL2 (ENSOARG00020013413) #16 PNMA2 (ENSOARG00020013810) #17 ENSOARG00020013834 #19 PPP2R2A (ENSOARG00020013913) #21 EBF2 (ENSOARG00020014139) #22 CDCA2 (ENSOARG00020014388) #23 KCTD9 (ENSOARG00020014450) #24 DOCK5 (ENSOARG00020014672) #26 GNRH1 (ENSOARG00020017575) #25 NEFL (ENSOARG00020017673) #27 NEFM (ENSOARG00020017740) #28 ADAM7 (ENSOARG00020017810) #29 STC1 (ENSOARG00020019387) #32 NKX2-6 (ENSOARG00020019459) #33 NKX3-1 (ENSOARG00020019488) #34 SLC25A37 (ENSOARG00020019551) #36 ENTPD4 (ENSOARG00020019615) ENSOARG00020019697 ENSOARG00020019730 RHOBTB2 (ENSOARG00020019759) Bovinae ANCESTRAL SPECIES 14 ENSGT00940000156806 ENSGT00530000063668.B.b #9 ENSGT00530000065109.h ENSGT00510000048121.j ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00940000154172.`b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Bos ANCESTRAL SPECIES 10 ENSGT00940000156806 ENSGT00530000063668.B.b #9 ENSGT00530000065109.h ENSGT00510000048121.j ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00940000154172.`b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Bos_a ANCESTRAL SPECIES 20 ENSGT00940000156806 ENSGT00530000063668.B.b #9 ENSGT00530000065109.h ENSGT00510000048121.j ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00940000154172.`b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Wild yak MODERN SPECIES 1486 ENSBMUG00000017193 APTX (ENSBMUG00000017120) ENSBMUG00000016995 #9 ENSBMUG00000016981 ENSBMUG00000016973 EPHX2 (ENSBMUG00000016915) #10 CHRNA2 (ENSBMUG00000016831) #11 PTK2B (ENSBMUG00000016777) #12 TRIM35 (ENSBMUG00000016700) #13 STMN4 (ENSBMUG00000016672) #14 ADRA1A (ENSBMUG00000016609) #15 DPYSL2 (ENSBMUG00000016569) #16 PNMA2 (ENSBMUG00000016534) #17 BNIP3L (ENSBMUG00000016521) #19 PPP2R2A (ENSBMUG00000016501) #21 EBF2 (ENSBMUG00000016447) #22 CDCA2 (ENSBMUG00000016433) #23 KCTD9 (ENSBMUG00000016419) #24 GNRH1 (ENSBMUG00000016371) #25 DOCK5 (ENSBMUG00000016356) #26 NEFL (ENSBMUG00000016301) #27 NEFM (ENSBMUG00000016293) #28 Domestic yak MODERN SPECIES 26 ENSBGRG00000001185 #9 ENSBGRG00000001154 ENSBGRG00000001133 ENSBGRG00000001069 EPHX2 (ENSBGRG00000000999) #10 CHRNA2 (ENSBGRG00000000968) #11 PTK2B (ENSBGRG00000000804) #12 TRIM35 (ENSBGRG00000000766) #13 STMN4 (ENSBGRG00000000736) #14 ADRA1A (ENSBGRG00000000703) #15 DPYSL2 (ENSBGRG00000000520) #16 PNMA2 (ENSBGRG00000000490) #17 ENSBGRG00000000482 ENSBGRG00000000444 #19 PPP2R2A (ENSBGRG00000000395) #21 EBF2 (ENSBGRG00000017109) #22 CDCA2 (ENSBGRG00000016906) #23 KCTD9 (ENSBGRG00000016782) #24 GNRH1 (ENSBGRG00000016731) #25 DOCK5 (ENSBGRG00000015972) #26 ENSBGRG00000015920 NEFL (ENSBGRG00000015850) #27 NEFM (ENSBGRG00000015744) #28 ENSBGRG00000015724 ADAM7 (ENSBGRG00000014923) #29 ENSBGRG00000014430 #30 ENSBGRG00000014380 STC1 (ENSBGRG00000014320) #32 NKX2-6 (ENSBGRG00000014251) #33 NKX3-1 (ENSBGRG00000014189) #34 SLC25A37 (ENSBGRG00000014111) #36 Bos_b ANCESTRAL SPECIES 3 ENSGT00940000155007 ENSGT00940000153558.b.i.b.a.a.h ENSGT00940000156806 ENSGT00530000063668.B.b #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00950000183031.B.e.b.a.a.a ENSGT00940000154172.`b ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 Hybrid Bos Indicus MODERN SPECIES 27 ENSBIXG00005022648 APTX (ENSBIXG00005022727) ENSBIXG00005022965 #9 ENSBIXG00005023012 ENSBIXG00005007577 EPHX2 (ENSBIXG00005023266) #10 ENSBIXG00005023343 #11 PTK2B (ENSBIXG00005023549) #12 TRIM35 (ENSBIXG00005023617) #13 STMN4 (ENSBIXG00005023682) #14 ADRA1A (ENSBIXG00005023744) #15 DPYSL2 (ENSBIXG00005004091) #16 PNMA2 (ENSBIXG00005023950) #17 ENSBIXG00005023958 PPP2R2A (ENSBIXG00005024066) #21 EBF2 (ENSBIXG00005024188) #22 CDCA2 (ENSBIXG00005024231) #23 KCTD9 (ENSBIXG00005004143) #24 GNRH1 (ENSBIXG00005024264) #25 DOCK5 (ENSBIXG00005024516) #26 NEFL (ENSBIXG00005024596) #27 NEFM (ENSBIXG00005002572) #28 ADAM7 (ENSBIXG00005024699) #29 ENSBIXG00005025151 #31 ENSBIXG00005025234 ENSBIXG00005004295 STC1 (ENSBIXG00005025303) #32 NKX2-6 (ENSBIXG00005025314) #33 NKX3-1 (ENSBIXG00005025337) #34 SLC25A37 (ENSBIXG00005025367) #36 LOXL2 (ENSBIXG00005025479) Cow MODERN SPECIES 27 SMU1 (ENSBTAG00000019564) DNAJA1 (ENSBTAG00000016265) APTX (ENSBTAG00000013947) ENSBTAG00000015027 #9 GULO (ENSBTAG00000026748) EPHX2 (ENSBTAG00000015241) #10 CHRNA2 (ENSBTAG00000002252) #11 PTK2B (ENSBTAG00000005958) #12 TRIM35 (ENSBTAG00000009958) #13 STMN4 (ENSBTAG00000017627) #14 ADRA1A (ENSBTAG00000031632) #15 DPYSL2 (ENSBTAG00000018373) #16 PNMA2 (ENSBTAG00000037986) #17 BNIP3L (ENSBTAG00000021307) #19 PPP2R2A (ENSBTAG00000018317) #21 EBF2 (ENSBTAG00000040390) #22 CDCA2 (ENSBTAG00000002756) #23 KCTD9 (ENSBTAG00000012382) #24 GNRH1 (ENSBTAG00000000164) #25 DOCK5 (ENSBTAG00000015513) #26 NEFL (ENSBTAG00000021949) #27 NEFM (ENSBTAG00000039530) ADAM7 (ENSBTAG00000039171) #29 ADAMDEC1 (ENSBTAG00000001125) #30 ADAM28 (ENSBTAG00000037929) #31 ENSBTAG00000038064 ENSBTAG00000048755 STC1 (ENSBTAG00000001687) #32 ENSBTAG00000051369 NKX2-6 (ENSBTAG00000014008) #33 NKX3-1 (ENSBTAG00000001221) #34 American bison MODERN SPECIES 3064 ENSBBBG00000011395 APTX (ENSBBBG00000011383) ENSBBBG00000011270 #9 ENSBBBG00000007068 EPHX2 (ENSBBBG00000011228) #10 CHRNA2 (ENSBBBG00000011130) #11 PTK2B (ENSBBBG00000002002) #12 ENSBBBG00000011020 #13 STMN4 (ENSBBBG00000011014) #14 ADRA1A (ENSBBBG00000001967) #15 DPYSL2 (ENSBBBG00000010977) #16 PNMA2 (ENSBBBG00000001944) #17 BNIP3L (ENSBBBG00000001943) #19 PPP2R2A (ENSBBBG00000010922) #21 ENSBBBG00000001938 EBF2 (ENSBBBG00000010900) #22 CDCA2 (ENSBBBG00000010883) #23 KCTD9 (ENSBBBG00000001907) #24 GNRH1 (ENSBBBG00000010860) #25 DOCK5 (ENSBBBG00000010849) #26 NEFM (ENSBBBG00000010802) #28 NEFL (ENSBBBG00000010785) #27 Siberian musk deer MODERN SPECIES 327 ENSMMSG00000007188 ENSMMSG00000007169 EPHX2 (ENSMMSG00000006938) #10 CHRNA2 (ENSMMSG00000006874) #11 PTK2B (ENSMMSG00000006593) #12 TRIM35 (ENSMMSG00000006491) #13 STMN4 (ENSMMSG00000006293) #14 ENSMMSG00000006276 ENSMMSG00000006269 ENSMMSG00000006250 ADRA1A (ENSMMSG00000006243) #15 ENSMMSG00000006237 DPYSL2 (ENSMMSG00000006136) #16 BNIP3L (ENSMMSG00000006092) #19 ENSMMSG00000005972 #21 EBF2 (ENSMMSG00000005908) #22 CDCA2 (ENSMMSG00000005842) #23 KCTD9 (ENSMMSG00000005761) #24 GNRH1 (ENSMMSG00000005726) #25 DOCK5 (ENSMMSG00000005425) #26 NEFL (ENSMMSG00000005342) #27 NEFM (ENSMMSG00000005289) #28 ADAM7 (ENSMMSG00000004688) #29 ADAMDEC1 (ENSMMSG00000004507) #30 ADAM28 (ENSMMSG00000004400) #31 ENSMMSG00000004334 ENSMMSG00000004320 STC1 (ENSMMSG00000013160) #32 NKX2-6 (ENSMMSG00000013148) #33 NKX3-1 (ENSMMSG00000013132) #34 SLC25A37 (ENSMMSG00000013114) #36 Yarkand deer MODERN SPECIES 7 SPINK4 (ENSCHYG00000006676) B4GALT1 (ENSCHYG00000006601) SMU1 (ENSCHYG00000006551) ENSCHYG00000006506 APTX (ENSCHYG00000006316) ENSCHYG00000006124 EPHX2 (ENSCHYG00000005702) #10 CHRNA2 (ENSCHYG00000005610) #11 PTK2B (ENSCHYG00000005281) #12 TRIM35 (ENSCHYG00000005184) #13 STMN4 (ENSCHYG00000005084) #14 ADRA1A (ENSCHYG00000004551) #15 DPYSL2 (ENSCHYG00000026867) #16 ENSCHYG00000026854 #19 ENSCHYG00000026841 #21 EBF2 (ENSCHYG00000026813) #22 CDCA2 (ENSCHYG00000026788) #23 KCTD9 (ENSCHYG00000026770) #24 GNRH1 (ENSCHYG00000026755) #25 DOCK5 (ENSCHYG00000026683) #26 NEFL (ENSCHYG00000026647) #27 NEFM (ENSCHYG00000026636) #28 ADAM7 (ENSCHYG00000026508) #29 ADAMDEC1 (ENSCHYG00000026439) #30 ADAM28 (ENSCHYG00000025837) #31 ENSCHYG00000025762 STC1 (ENSCHYG00000025743) #32 NKX2-6 (ENSCHYG00000025734) #33 NKX3-1 (ENSCHYG00000025709) #34 SLC25A37 (ENSCHYG00000025677) #36 ENTPD4 (ENSCHYG00000025626) Laurasiatheria_b ANCESTRAL SPECIES 8 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Carnivora ANCESTRAL SPECIES 5 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Caniformia ANCESTRAL SPECIES 7 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b.q.b #19 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Caniformia_b ANCESTRAL SPECIES 5 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00390000000378.d.b.db.b ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b.q.b #19 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Ursidae ANCESTRAL SPECIES 50 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b.q.b #19 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Ursus ANCESTRAL SPECIES 126 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b.q.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00720000108860 American black bear MODERN SPECIES 941 PPP2R2A (ENSUAMG00000020589) #21 EBF2 (ENSUAMG00000020544) #22 Polar bear MODERN SPECIES 242 ADRA1A (ENSUMAG00000003460) #15 DPYSL2 (ENSUMAG00000003466) #16 BNIP3L (ENSUMAG00000003506) #19 PPP2R2A (ENSUMAG00000003521) #21 EBF2 (ENSUMAG00000003592) #22 ENSUMAG00000004389 #23 ENSUMAG00000004393 #23 KCTD9 (ENSUMAG00000004405) #24 GNRH1 (ENSUMAG00000004411) #25 ENSUMAG00000004417 #26 ENSUMAG00000004442 #26 ENSUMAG00000004621 NEFL (ENSUMAG00000004623) #27 ENSUMAG00000004628 ADAM7 (ENSUMAG00000004656) #29 ADAMDEC1 (ENSUMAG00000004698) #30 ADAM28 (ENSUMAG00000004702) #31 STC1 (ENSUMAG00000004720) #32 SLC25A37 (ENSUMAG00000004734) #36 ENTPD4 (ENSUMAG00000004742) Giant Panda MODERN SPECIES 15 NOP10 (ENSAMEG00000026587) ENSAMEG00000024734 NUTM1 (ENSAMEG00000004098) ENSAMEG00000004112 ENSAMEG00000020043 ENSAMEG00000029055 ENSAMEG00000028761 ENSAMEG00000024521 ENSAMEG00000025486 ENSAMEG00000023985 ENSAMEG00000000220 #15 DPYSL2 (ENSAMEG00000000223) #16 PNMA2 (ENSAMEG00000023900) #17 BNIP3L (ENSAMEG00000000287) #19 PPP2R2A (ENSAMEG00000000302) #21 EBF2 (ENSAMEG00000000326) #22 CDCA2 (ENSAMEG00000000346) #23 KCTD9 (ENSAMEG00000000365) #24 GNRH1 (ENSAMEG00000000386) #25 DOCK5 (ENSAMEG00000000393) #26 NEFL (ENSAMEG00000000584) #27 ENSAMEG00000000596 ADAM7 (ENSAMEG00000001607) #29 ADAMDEC1 (ENSAMEG00000001578) #30 ADAM28 (ENSAMEG00000001508) #31 STC1 (ENSAMEG00000024356) #32 NKX2-6 (ENSAMEG00000002863) #33 NKX3-1 (ENSAMEG00000026096) #34 SLC25A37 (ENSAMEG00000002868) #36 ENTPD4 (ENSAMEG00000002873) LOXL2 (ENSAMEG00000002911) Mustelinae ANCESTRAL SPECIES 104 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Ferret MODERN SPECIES 256 ENSMPUG00000003166 AADAT (ENSMPUG00000003172) ENSMPUG00000003181 PPP2R2A (ENSMPUG00000003186) #21 EBF2 (ENSMPUG00000003195) #22 ENSMPUG00000003203 CDCA2 (ENSMPUG00000003208) #23 KCTD9 (ENSMPUG00000003214) #24 GNRH1 (ENSMPUG00000003219) #25 DOCK5 (ENSMPUG00000003228) #26 NEFL (ENSMPUG00000003244) #27 ENSMPUG00000003249 ADAM7 (ENSMPUG00000003252) #29 ENSMPUG00000018762 ADAMDEC1 (ENSMPUG00000003330) #30 ADAM28 (ENSMPUG00000003381) #31 STC1 (ENSMPUG00000003399) #32 NKX2-6 (ENSMPUG00000003409) #33 NKX3-1 (ENSMPUG00000003418) #34 SLC25A37 (ENSMPUG00000003422) #36 American mink MODERN SPECIES 363 PPP2R2A (ENSNVIG00000019771) #21 EBF2 (ENSNVIG00000019723) #22 CDCA2 (ENSNVIG00000019695) #23 KCTD9 (ENSNVIG00000019678) #24 GNRH1 (ENSNVIG00000019664) #25 DOCK5 (ENSNVIG00000019592) #26 ENSNVIG00000019578 #27 NEFM (ENSNVIG00000019575) #28 Canidae ANCESTRAL SPECIES 31 ENSGT00940000158598 ENSGT00390000004380.f #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734.h #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Canis_lupus ANCESTRAL SPECIES 18 ENSGT00390000004380.f #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT00980000202976 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734.h #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Dingo MODERN SPECIES 304 SCARA3 (ENSCAFG00020012469) #8 CLU (ENSCAFG00020012476) #9 ENSCAFG00020012482 EPHX2 (ENSCAFG00020012494) #10 CHRNA2 (ENSCAFG00020012510) #11 PTK2B (ENSCAFG00020012533) #12 TRIM35 (ENSCAFG00020012559) #13 ENSCAFG00020012574 STMN4 (ENSCAFG00020012576) #14 ADRA1A (ENSCAFG00020012587) #15 DPYSL2 (ENSCAFG00020012592) #16 ENSCAFG00020012600 PNMA2 (ENSCAFG00020012608) #17 ENSCAFG00020012611 #19 PPP2R2A (ENSCAFG00020012619) #21 EBF2 (ENSCAFG00020012629) #22 CDCA2 (ENSCAFG00020012668) #23 KCTD9 (ENSCAFG00020012683) #24 GNRH1 (ENSCAFG00020012686) #25 DOCK5 (ENSCAFG00020012698) #26 NEFM (ENSCAFG00020012742) #28 NEFL (ENSCAFG00020012757) #27 ADAM7 (ENSCAFG00020012781) #29 ADAM28 (ENSCAFG00020012819) #31 STC1 (ENSCAFG00020012841) #32 ENSCAFG00020012845 #33 NKX3-1 (ENSCAFG00020012847) #34 SLC25A37 (ENSCAFG00020012855) #36 ENSCAFG00020012856 LOXL2 (ENSCAFG00020012866) R3HCC1 (ENSCAFG00020012870) Dog MODERN SPECIES 17 SCARA3 (ENSCAFG00845010317) #8 CLU (ENSCAFG00845010565) #9 ENSCAFG00845010841 EPHX2 (ENSCAFG00845011024) #10 CHRNA2 (ENSCAFG00845011451) #11 PTK2B (ENSCAFG00845011700) #12 TRIM35 (ENSCAFG00845012423) #13 ENSCAFG00845012522 STMN4 (ENSCAFG00845012672) #14 ADRA1A (ENSCAFG00845012931) #15 DPYSL2 (ENSCAFG00845013099) #16 ENSCAFG00845013305 PNMA2 (ENSCAFG00845013366) #17 PPP2R2A (ENSCAFG00845013440) #19 PPP2R2A (ENSCAFG00845013645) #21 EBF2 (ENSCAFG00845013887) #22 ENSCAFG00845013986 ENSCAFG00845014017 CDCA2 (ENSCAFG00845014066) #23 KCTD9 (ENSCAFG00845014154) #24 GNRH1 (ENSCAFG00845014221) #25 DOCK5 (ENSCAFG00845014289) #26 NEFL (ENSCAFG00845014438) #27 NEFM (ENSCAFG00845014497) ADAM7 (ENSCAFG00845014694) #29 ADAMDEC1 (ENSCAFG00845014873) #30 ADAM28 (ENSCAFG00845015078) #31 STC1 (ENSCAFG00845015608) #32 NKX2-6 (ENSCAFG00845015839) #33 NKX3-1 (ENSCAFG00845015954) #34 SLC25A37 (ENSCAFG00845016130) #36 Red fox MODERN SPECIES 67 SCARA3 (ENSVVUG00000003490) #8 CLU (ENSVVUG00000003495) #9 ENSVVUG00000003499 EPHX2 (ENSVVUG00000003509) #10 CHRNA2 (ENSVVUG00000003529) #11 PTK2B (ENSVVUG00000003546) #12 TRIM35 (ENSVVUG00000003575) #13 STMN4 (ENSVVUG00000003585) #14 ADRA1A (ENSVVUG00000003602) #15 ENSVVUG00000003623 DPYSL2 (ENSVVUG00000003636) #16 ENSVVUG00000003679 PNMA2 (ENSVVUG00000003687) #17 ENSVVUG00000003696 #19 PPP2R2A (ENSVVUG00000003745) #21 EBF2 (ENSVVUG00000003772) #22 ENSVVUG00000004033 #23 ENSVVUG00000004038 KCTD9 (ENSVVUG00000004063) #24 GNRH1 (ENSVVUG00000004172) #25 ENSVVUG00000004182 #26 ENSVVUG00000004272 #26 ENSVVUG00000004850 NEFL (ENSVVUG00000004852) #27 NEFM (ENSVVUG00000004862) #28 ADAM7 (ENSVVUG00000004873) #29 ADAMDEC1 (ENSVVUG00000004882) #30 ADAM28 (ENSVVUG00000004891) #31 STC1 (ENSVVUG00000004921) #32 NKX2-6 (ENSVVUG00000004929) #33 ENSVVUG00000004932 #34 Felidae ANCESTRAL SPECIES 4 ENSGT00940000156986 ENSGT00390000018326 ENSGT00550000074618.a.b ENSGT00390000006260 ENSGT00950000183162.b ENSGT00940000159168 ENSGT00940000157326.h ENSGT00940000160287 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Panthera ANCESTRAL SPECIES 5 ENSGT00940000156986 ENSGT00390000018326 ENSGT00550000074618.a.b ENSGT00390000006260 ENSGT00950000183162.b ENSGT00940000159168 ENSGT00940000157326.h ENSGT00940000160287 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406.b #29 ENSGT00940000161406.a #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Panthera_a ANCESTRAL SPECIES 2 ENSGT00940000156986 ENSGT00390000018326.c ENSGT00550000074618.a.b ENSGT00390000006260 ENSGT00950000183162.b ENSGT00940000159168 ENSGT00940000157326.h ENSGT00940000160287 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b.q.a #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406.b #29 ENSGT00940000161685.A.a ENSGT00940000161406.a #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 lion MODERN SPECIES 4 ENSPLOG00000001604 PPP2CB (ENSPLOG00000001655) TEX15 (ENSPLOG00000001699) PURG (ENSPLOG00000001734) WRN (ENSPLOG00000001754) NRG1 (ENSPLOG00000002181) ENSPLOG00000002510 FUT10 (ENSPLOG00000002522) MAK16 (ENSPLOG00000002547) TTI2 (ENSPLOG00000002576) ADRA1A (ENSPLOG00000002621) #15 DPYSL2 (ENSPLOG00000002681) #16 PNMA2 (ENSPLOG00000002750) #17 BNIP3L (ENSPLOG00000002778) #19 PPP2R2A (ENSPLOG00000002836) #21 EBF2 (ENSPLOG00000002904) #22 CDCA2 (ENSPLOG00000002958) #23 KCTD9 (ENSPLOG00000003006) #24 GNRH1 (ENSPLOG00000003031) #25 DOCK5 (ENSPLOG00000003063) #26 ENSPLOG00000003197 NEFL (ENSPLOG00000003220) #27 ADAM7 (ENSPLOG00000003308) #29 ADAMDEC1 (ENSPLOG00000003417) #30 ADAM28 (ENSPLOG00000003535) #31 STC1 (ENSPLOG00000003716) #32 NKX2-6 (ENSPLOG00000003735) #33 NKX3-1 (ENSPLOG00000003755) #34 SLC25A37 (ENSPLOG00000003786) #36 ENTPD4 (ENSPLOG00000003831) LOXL2 (ENSPLOG00000003867) leopard MODERN SPECIES 49 PURG (ENSPPRG00000011836) WRN (ENSPPRG00000010928) ENSPPRG00000009523 ENSPPRG00000009398 ENSPPRG00000009260 NRG1 (ENSPPRG00000008036) FUT10 (ENSPPRG00000002861) MAK16 (ENSPPRG00000002317) TTI2 (ENSPPRG00000002077) ENSPPRG00000001728 ADRA1A (ENSPPRG00000000941) #15 DPYSL2 (ENSPPRG00000000390) #16 PNMA2 (ENSPPRG00000017614) #17 ENSPPRG00000023377 #19 PPP2R2A (ENSPPRG00000023725) #21 EBF2 (ENSPPRG00000024264) #22 CDCA2 (ENSPPRG00000017681) #23 KCTD9 (ENSPPRG00000013953) #24 GNRH1 (ENSPPRG00000013600) #25 DOCK5 (ENSPPRG00000013437) #26 ENSPPRG00000011381 #27 NEFL (ENSPPRG00000010879) #27 NEFM (ENSPPRG00000009800) #28 ENSPPRG00000008890 #29 ENSPPRG00000007410 #29 ADAMDEC1 (ENSPPRG00000006694) #30 ADAM28 (ENSPPRG00000005754) #31 STC1 (ENSPPRG00000004675) #32 NKX2-6 (ENSPPRG00000004345) #33 NKX3-1 (ENSPPRG00000004152) #34 SLC25A37 (ENSPPRG00000003800) #36 Tiger MODERN SPECIES 446 GTF2E2 (ENSPTIG00000015001) GSR (ENSPTIG00000010109) UBXN8 (ENSPTIG00000008126) PPP2CB (ENSPTIG00000006186) PURG (ENSPTIG00000000641) WRN (ENSPTIG00000020609) NRG1 (ENSPTIG00000015564) FUT10 (ENSPTIG00000014430) MAK16 (ENSPTIG00000014223) TTI2 (ENSPTIG00000013872) ADRA1A (ENSPTIG00000012913) #15 DPYSL2 (ENSPTIG00000009643) #16 PNMA2 (ENSPTIG00000004671) #17 BNIP3L (ENSPTIG00000007550) #19 PPP2R2A (ENSPTIG00000004184) #21 EBF2 (ENSPTIG00000021987) #22 CDCA2 (ENSPTIG00000020815) #23 KCTD9 (ENSPTIG00000020189) #24 GNRH1 (ENSPTIG00000019710) #25 DOCK5 (ENSPTIG00000015263) #26 NEFL (ENSPTIG00000013748) #27 ENSPTIG00000013410 ENSPTIG00000010903 #29 ENSPTIG00000008882 #29 ADAMDEC1 (ENSPTIG00000007220) #30 ADAM28 (ENSPTIG00000020425) #31 STC1 (ENSPTIG00000020203) #32 NKX3-1 (ENSPTIG00000019365) #34 SLC25A37 (ENSPTIG00000018510) #36 ENTPD4 (ENSPTIG00000014881) LOXL2 (ENSPTIG00000013484) Cat MODERN SPECIES 235 GSR (ENSFCAG00000001476) UBXN8 (ENSFCAG00000026418) PPP2CB (ENSFCAG00000025139) TEX15 (ENSFCAG00000041903) PURG (ENSFCAG00000014218) WRN (ENSFCAG00000024759) NRG1 (ENSFCAG00000024086) FUT10 (ENSFCAG00000003845) MAK16 (ENSFCAG00000033972) TTI2 (ENSFCAG00000015300) ADRA1A (ENSFCAG00000023739) #15 DPYSL2 (ENSFCAG00000005338) #16 PNMA2 (ENSFCAG00000032107) #17 BNIP3L (ENSFCAG00000030159) #19 PPP2R2A (ENSFCAG00000029721) #21 EBF2 (ENSFCAG00000003607) #22 ENSFCAG00000023720 CDCA2 (ENSFCAG00000011887) #23 KCTD9 (ENSFCAG00000011885) #24 GNRH1 (ENSFCAG00000029305) #25 DOCK5 (ENSFCAG00000011883) #26 NEFL (ENSFCAG00000013441) #27 NEFM (ENSFCAG00000029288) #28 ADAM7 (ENSFCAG00000013087) #29 ADAMDEC1 (ENSFCAG00000003531) #30 ADAM28 (ENSFCAG00000008957) #31 STC1 (ENSFCAG00000026611) #32 NKX2-6 (ENSFCAG00000038582) #33 NKX3-1 (ENSFCAG00000039688) #34 SLC25A37 (ENSFCAG00000005418) #36 ENTPD4 (ENSFCAG00000005417) Laurasiatheria_c ANCESTRAL SPECIES 8 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 Equus ANCESTRAL SPECIES 24 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00990000214190 ENSGT00940000156208 #27 ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Donkey MODERN SPECIES 22 ESCO2 (ENSEASG00005016302) CCDC25 (ENSEASG00005037176) #7 SCARA3 (ENSEASG00005016295) #8 CLU (ENSEASG00005016294) #9 ENSEASG00005016285 EPHX2 (ENSEASG00005016280) #10 CHRNA2 (ENSEASG00005016279) #11 PTK2B (ENSEASG00005015727) #12 TRIM35 (ENSEASG00005015643) #13 STMN4 (ENSEASG00005015641) #14 ADRA1A (ENSEASG00005015639) #15 DPYSL2 (ENSEASG00005015636) #16 BNIP3L (ENSEASG00005015633) #19 ENSEASG00005015629 #21 PNMA2 (ENSEASG00005035920) #17 EBF2 (ENSEASG00005015624) #22 CDCA2 (ENSEASG00005015623) #23 KCTD9 (ENSEASG00005015621) #24 GNRH1 (ENSEASG00005015619) #25 DOCK5 (ENSEASG00005015240) #26 ENSEASG00005032794 NEFL (ENSEASG00005015035) #27 NEFM (ENSEASG00005015031) #28 ENSEASG00005018749 #29 ENSEASG00005025876 #29 ADAMDEC1 (ENSEASG00005018757) #30 ADAM28 (ENSEASG00005018766) #31 STC1 (ENSEASG00005025792) #32 NKX2-6 (ENSEASG00005018774) #33 NKX3-1 (ENSEASG00005018775) #34 SLC25A37 (ENSEASG00005026222) #36 Horse MODERN SPECIES 11 ESCO2 (ENSECAG00000012899) CCDC25 (ENSECAG00000011924) #7 SCARA3 (ENSECAG00000011350) #8 CLU (ENSECAG00000007010) #9 GULO (ENSECAG00000003068) EPHX2 (ENSECAG00000023444) #10 CHRNA2 (ENSECAG00000022609) #11 PTK2B (ENSECAG00000018924) #12 TRIM35 (ENSECAG00000018548) #13 STMN4 (ENSECAG00000044039) #14 ADRA1A (ENSECAG00000015917) #15 DPYSL2 (ENSECAG00000008662) #16 PNMA2 (ENSECAG00000008517) #17 BNIP3L (ENSECAG00000005770) #19 PPP2R2A (ENSECAG00000019205) #21 EBF2 (ENSECAG00000014179) #22 ENSECAG00000051786 ENSECAG00000032941 ENSECAG00000048777 CDCA2 (ENSECAG00000013188) #23 KCTD9 (ENSECAG00000011535) #24 GNRH1 (ENSECAG00000010664) #25 DOCK5 (ENSECAG00000023607) #26 NEFL (ENSECAG00000022890) #27 NEFM (ENSECAG00000022370) #28 ADAM7 (ENSECAG00000020537) #29 ADAMDEC1 (ENSECAG00000019922) #30 ADAM28 (ENSECAG00000014577) #31 ENSECAG00000053236 STC1 (ENSECAG00000013731) #32 NKX2-6 (ENSECAG00000028673) #33 Chiroptera ANCESTRAL SPECIES 64 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Megabat MODERN SPECIES 3400 BNIP3L (ENSPVAG00000008294) #19 PPP2R2A (ENSPVAG00000024136) #21 EBF2 (ENSPVAG00000024254) #22 Microchiroptera ANCESTRAL SPECIES 57 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Microbat MODERN SPECIES 1085 ADRA1A (ENSMLUG00000027812) #15 ENSMLUG00000023958 ENSMLUG00000025762 DPYSL2 (ENSMLUG00000000271) #16 BNIP3L (ENSMLUG00000014949) #19 PPP2R2A (ENSMLUG00000030355) #21 EBF2 (ENSMLUG00000011509) #22 CDCA2 (ENSMLUG00000006321) #23 KCTD9 (ENSMLUG00000006310) #24 GNRH1 (ENSMLUG00000006306) #25 DOCK5 (ENSMLUG00000006278) #26 ENSMLUG00000029940 ADAM7 (ENSMLUG00000009580) #29 ADAMDEC1 (ENSMLUG00000009552) #30 ADAM28 (ENSMLUG00000009526) #31 ENSMLUG00000027935 ENSMLUG00000023520 STC1 (ENSMLUG00000010663) #32 NKX3-1 (ENSMLUG00000006118) #34 Greater horseshoe bat MODERN SPECIES 9 FBXL12 (ENSRFEG00010005897) ENSRFEG00010005931 ENSRFEG00010005962 ZNF699 (ENSRFEG00010005993) ENSRFEG00010006027 ENSRFEG00010006057 ENSRFEG00010006089 ENSRFEG00010006149 OR7D4 (ENSRFEG00010006172) OR7D2 (ENSRFEG00010006200) ADRA1A (ENSRFEG00010006218) #15 DPYSL2 (ENSRFEG00010006268) #16 PNMA2 (ENSRFEG00010006352) #17 BNIP3L (ENSRFEG00010006372) #19 PPP2R2A (ENSRFEG00010006444) #21 EBF2 (ENSRFEG00010006593) #22 CDCA2 (ENSRFEG00010006703) #23 KCTD9 (ENSRFEG00010006936) #24 GNRH1 (ENSRFEG00010006984) #25 DOCK5 (ENSRFEG00010007027) #26 NEFL (ENSRFEG00010007163) #27 ENSRFEG00010007201 ADAM7 (ENSRFEG00010007316) #29 ADAMDEC1 (ENSRFEG00010007930) #30 ADAM28 (ENSRFEG00010007990) #31 STC1 (ENSRFEG00010008368) #32 ENSRFEG00010008447 ENSRFEG00010008464 NKX2-6 (ENSRFEG00010008490) #33 NKX3-1 (ENSRFEG00010008525) #34 SLC25A37 (ENSRFEG00010008583) #36 Atlantogenata ANCESTRAL SPECIES 23 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 Xenarthra ANCESTRAL SPECIES 559 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT01030000234522.C.b.e.a.a.b #17 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a.hb #21 ENSGT00950000182859.A.a.a.b #22 Sloth MODERN SPECIES 7810 EBF2 (ENSCHOG00000007889) #22 Armadillo MODERN SPECIES 2325 POF1B (ENSDNOG00000016063) ZNF711 (ENSDNOG00000031961) ENSDNOG00000037476 #15 DPYSL2 (ENSDNOG00000010850) #16 PNMA2 (ENSDNOG00000010846) #17 BNIP3L (ENSDNOG00000031749) #19 ENSDNOG00000042970 #21 EBF2 (ENSDNOG00000040488) #22 Afrotheria ANCESTRAL SPECIES 19 ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a Tenrec MODERN SPECIES 17016 ENSETEG00000017311 #22 Afrotheria_a ANCESTRAL SPECIES 18 ENSGT00720000108839 ENSGT00940000158598 ENSGT00390000004380 #7 ENSGT00940000158238 #8 ENSGT00530000063668.B #9 ENSGT00510000049722 ENSGT00940000158614 #10 ENSGT00940000158299 #11 ENSGT00940000157269.a.a #12 ENSGT00940000160868 #13 ENSGT01030000234597.a.b.a #14 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000161406 #29 ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a Elephant MODERN SPECIES 225 PBK (ENSLAFG00000001231) ESCO2 (ENSLAFG00000001229) CCDC25 (ENSLAFG00000001228) #7 SCARA3 (ENSLAFG00000011471) #8 CLU (ENSLAFG00000011466) #9 ENSLAFG00000031573 EPHX2 (ENSLAFG00000005225) #10 CHRNA2 (ENSLAFG00000026710) #11 PTK2B (ENSLAFG00000005217) #12 TRIM35 (ENSLAFG00000009354) #13 STMN4 (ENSLAFG00000022503) #14 ADRA1A (ENSLAFG00000000055) #15 DPYSL2 (ENSLAFG00000003305) #16 BNIP3L (ENSLAFG00000018106) #19 PPP2R2A (ENSLAFG00000021762) #21 EBF2 (ENSLAFG00000022465) #22 CDCA2 (ENSLAFG00000003532) #23 KCTD9 (ENSLAFG00000003529) #24 GNRH1 (ENSLAFG00000003526) #25 DOCK5 (ENSLAFG00000003516) #26 NEFL (ENSLAFG00000026910) #27 ENSLAFG00000006017 ENSLAFG00000022323 ENSLAFG00000030752 ENSLAFG00000026486 ADAM7 (ENSLAFG00000000586) #29 ADAM28 (ENSLAFG00000005662) #31 STC1 (ENSLAFG00000005774) #32 NKX3-1 (ENSLAFG00000008941) #34 SLC25A37 (ENSLAFG00000026743) #36 ENTPD4 (ENSLAFG00000008176) Hyrax MODERN SPECIES 7369 ENSPCAG00000000388 EBF2 (ENSPCAG00000018823) #22 Marsupialia ANCESTRAL SPECIES 26 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00530000063970.c.b ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Marsupialia_b ANCESTRAL SPECIES 23 ENSGT00940000157488 ENSGT00940000154863 ENSGT01050000244898.b.a ENSGT00390000013048 ENSGT00940000157631 ENSGT00940000159627 ENSGT00940000154148.a.b ENSGT00940000153710.a ENSGT00940000155847 ENSGT00390000014208 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000154418.a.b #28 ENSGT00940000161406 #29 ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00530000063970.c.b ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d Diprotodontia ANCESTRAL SPECIES 35 ENSGT00940000157488 ENSGT00940000154863 ENSGT01050000244898.b.a ENSGT00390000013048 ENSGT00940000157631 ENSGT00940000159627 ENSGT00940000154148.a.b ENSGT00940000153710.a ENSGT00940000155847 ENSGT00390000014208 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00530000063970.c.b ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a Diprotodontia_a DUPLICATION Diprotodontia_a ANCESTRAL SPECIES 34 ENSGT00940000157488 ENSGT00940000154863 ENSGT01050000244898.b.a ENSGT00390000013048 ENSGT00940000157631 ENSGT00940000159627 ENSGT00940000154148.a.b ENSGT00940000153710.a ENSGT00940000155847 ENSGT00390000014208 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a.g.a #21 ENSGT00950000182859.A.a.a.b.g #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00900000141143 #30 ENSGT00940000156716 #31 ENSGT00530000063970.c.b ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a koala MODERN SPECIES 124 MTHFD2 (ENSPCIG00000023570) MOB1A (ENSPCIG00000023572) ENSPCIG00000023576 TET3 (ENSPCIG00000023577) ENSPCIG00000023583 ENSPCIG00000023588 STAMBP (ENSPCIG00000022956) DUSP11 (ENSPCIG00000022957) ENSPCIG00000022960 ENSPCIG00000029147 LRRTM4 (ENSPCIG00000001491) ADRA1A (ENSPCIG00000031058) #15 DPYSL2 (ENSPCIG00000025157) #16 ENSPCIG00000025163 #19 PPP2R2A (ENSPCIG00000025165) #21 ENSPCIG00000025169 #22 Common wonbat MODERN SPECIES 1069 LRRTM4 (ENSVURG00010001769) ADRA1A (ENSVURG00010001754) #15 DPYSL2 (ENSVURG00010001742) #16 BNIP3L (ENSVURG00010001709) #19 ENSVURG00010001698 ENSVURG00010001676 #21 EBF2 (ENSVURG00010001624) #22 ENSVURG00010001573 #23 KCTD9 (ENSVURG00010001552) #24 GNRH1 (ENSVURG00010001537) #25 DOCK5 (ENSVURG00010001437) #26 NEFL (ENSVURG00010001385) #27 ENSVURG00010001289 ENSVURG00010001245 #30 ADAM28 (ENSVURG00010001006) #31 ENSVURG00010000961 STC1 (ENSVURG00010000938) #32 ENSVURG00010000932 SLC25A37 (ENSVURG00010000911) #36 ENTPD4 (ENSVURG00010000898) LOXL2 (ENSVURG00010000862) R3HCC1 (ENSVURG00010000849) Diprotodontia_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.b.h #22 koala MODERN SPECIES 88 ENSPCIG00000000815 #22 ENSPCIG00000001012 ENSPCIG00000001033 #23 KCTD9 (ENSPCIG00000001064) #24 DOCK5 (ENSPCIG00000001109) #26 NEFL (ENSPCIG00000027211) #27 ENSPCIG00000016966 ADAMDEC1 (ENSPCIG00000016489) #30 ADAM28 (ENSPCIG00000011332) #31 ENSPCIG00000037234 STC1 (ENSPCIG00000015151) #32 ENSPCIG00000020778 NKX3-1 (ENSPCIG00000020776) #34 SLC25A37 (ENSPCIG00000035854) #36 ENTPD4 (ENSPCIG00000020770) LOXL2 (ENSPCIG00000020766) Wallaby MODERN SPECIES 142 EBF2 (ENSMEUG00000009275) #22 Tasmanian devil MODERN SPECIES 1 ENSSHAG00000007748 TET3 (ENSSHAG00000028758) DGUOK (ENSSHAG00000024485) ACTG2 (ENSSHAG00000004358) ENSSHAG00000003676 ENSSHAG00000026406 ENSSHAG00000001601 ENSSHAG00000026380 ENSSHAG00000027206 ENSSHAG00000003196 ENSSHAG00000021277 ENSSHAG00000005644 #15 ENSSHAG00000008277 #16 BNIP3L (ENSSHAG00000021764) #19 PPP2R2A (ENSSHAG00000025445) #21 EBF2 (ENSSHAG00000021589) #22 ENSSHAG00000014469 #23 KCTD9 (ENSSHAG00000001024) #24 GNRH1 (ENSSHAG00000029017) #25 DOCK5 (ENSSHAG00000002033) #26 ENSSHAG00000028159 #27 NEFM (ENSSHAG00000006728) #28 ENSSHAG00000011334 #29 ADAMDEC1 (ENSSHAG00000011993) #30 ADAM28 (ENSSHAG00000012316) #31 ENSSHAG00000025330 STC1 (ENSSHAG00000026997) #32 ENSSHAG00000025937 ENSSHAG00000022384 NKX3-1 (ENSSHAG00000015475) #34 SLC25A37 (ENSSHAG00000021392) #36 Opossum MODERN SPECIES ENSMODG00000003893 ENSMODG00000045356 ENSMODG00000049355 ENSMODG00000019174 ENSMODG00000044059 ENSMODG00000025779 EXOC6B (ENSMODG00000019186) ENSMODG00000039640 LRRTM4 (ENSMODG00000016671) ENSMODG00000050679 ADRA1A (ENSMODG00000016673) #15 ENSMODG00000016680 #16 BNIP3L (ENSMODG00000016685) #19 ENSMODG00000043642 PPP2R2A (ENSMODG00000016691) #21 EBF2 (ENSMODG00000016702) #22 ENSMODG00000016706 #23 KCTD9 (ENSMODG00000016711) #24 DOCK5 (ENSMODG00000016721) #26 NEFL (ENSMODG00000016731) #27 ENSMODG00000016740 ENSMODG00000016755 #29 ADAMDEC1 (ENSMODG00000016762) #30 ADAM28 (ENSMODG00000016767) #31 ENSMODG00000042259 STC1 (ENSMODG00000016782) #32 ENSMODG00000016788 NKX3-1 (ENSMODG00000016789) #34 ENSMODG00000016791 #36 ENSMODG00000038949 #36 ENTPD4 (ENSMODG00000016799) Platypus MODERN SPECIES 16 GFPT1 (ENSOANG00000022684) ANTXR1 (ENSOANG00000049516) BMP10 (ENSOANG00000013884) ARHGAP25 (ENSOANG00000042047) ENSOANG00000048653 ENSOANG00000047428 ENSOANG00000036867 SLC23A2 (ENSOANG00000046766) RASSF2 (ENSOANG00000050398) ENSOANG00000047340 PRNP (ENSOANG00000045653) LRRTM4 (ENSOANG00000001430) ADRA1A (ENSOANG00000047360) #15 DPYSL2 (ENSOANG00000039496) #16 PPP2R2A (ENSOANG00000041383) #21 EBF2 (ENSOANG00000037491) #22 ENSOANG00000031714 #23 KCTD9 (ENSOANG00000000499) #24 ENSOANG00000037092 DOCK5 (ENSOANG00000014390) #26 NEFL (ENSOANG00000009794) #27 ENSOANG00000038027 Sauria ANCESTRAL SPECIES 27 ENSGT00930000150969.A.c.a ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000159140.d ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d ENSGT00940000155874 Lepidosauria ANCESTRAL SPECIES 88 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00960000187172 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000159140.d ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a tuatara MODERN SPECIES 1571 ADRA1A (ENSSPUG00000013492) #15 DPYSL2 (ENSSPUG00000013440) #16 ENSSPUG00000013412 #19 PPP2R2A (ENSSPUG00000013396) #21 EBF2 (ENSSPUG00000013384) #22 Episquamata ANCESTRAL SPECIES 12 ENSGT00940000155477 ENSGT00940000164321 ENSGT00730000111133 ENSGT00940000158936 ENSGT00980000199378 ENSGT00940000156808 ENSGT00940000159772 ENSGT00950000185671 ENSGT00510000049083.a.a ENSGT00510000049083.a.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00960000187172 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Laterata ANCESTRAL SPECIES 15 ENSGT00940000155477 ENSGT00940000164321 ENSGT00730000111133 ENSGT00940000158936 ENSGT00980000199378 ENSGT00940000156808 ENSGT00940000159772 ENSGT00950000185671 ENSGT00510000049083.a.a ENSGT00510000049083.a.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000170702 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Common wall lizard MODERN SPECIES 6 DDHD2 (ENSPMRG00000014189) PLPP5 (ENSPMRG00000014218) ENSPMRG00000014224 ENSPMRG00000014229 ENSPMRG00000014267 ENSPMRG00000014272 LRRTM4 (ENSPMRG00000014281) ENSPMRG00000014289 ENSPMRG00000014295 ADRA1A (ENSPMRG00000014316) #15 ENSPMRG00000014325 DPYSL2 (ENSPMRG00000014333) #16 BNIP3L (ENSPMRG00000014354) #19 ENSPMRG00000014370 #21 ENSPMRG00000014394 EBF2 (ENSPMRG00000014453) #22 ENSPMRG00000014568 KCTD9 (ENSPMRG00000014576) #24 ENSPMRG00000014587 DOCK5 (ENSPMRG00000015038) #26 NEFL (ENSPMRG00000017204) #27 NEFM (ENSPMRG00000017209) #28 ADAM28 (ENSPMRG00000017231) #31 ENSPMRG00000017268 STC1 (ENSPMRG00000017272) #32 ENSPMRG00000017279 NKX3-1 (ENSPMRG00000017285) #34 SLC25A37 (ENSPMRG00000017292) #36 ENTPD4 (ENSPMRG00000017312) ENSPMRG00000017342 LOXL2 (ENSPMRG00000017343) Argentine black and white tegu MODERN SPECIES 42 FDXACB1 (ENSSMRG00000021294) ALG9 (ENSSMRG00000021293) ENSSMRG00000021292 ENSSMRG00000021291 SIK2 (ENSSMRG00000021290) LAYN (ENSSMRG00000021289) HOATZ (ENSSMRG00000021288) ENSSMRG00000021287 LRRTM4 (ENSSMRG00000021286) ADRA1A (ENSSMRG00000021285) #15 DPYSL2 (ENSSMRG00000021283) #16 BNIP3L (ENSSMRG00000021282) #19 PPP2R2A (ENSSMRG00000021281) #21 ENSSMRG00000021280 ##22 ENSSMRG00000021279 EBF2 (ENSSMRG00000021083) #22 ENSSMRG00000021076 ENSSMRG00000021074 #24 GNRH1 (ENSSMRG00000021072) #25 DOCK5 (ENSSMRG00000021066) #26 NEFL (ENSSMRG00000021062) #27 ENSSMRG00000021061 ADAM28 (ENSSMRG00000021057) #31 STC1 (ENSSMRG00000021051) #32 NKX3-1 (ENSSMRG00000021050) #34 ENSSMRG00000021049 SLC25A37 (ENSSMRG00000021048) #36 ENTPD4 (ENSSMRG00000021046) LOXL2 (ENSSMRG00000021043) R3HCC1 (ENSSMRG00000021041) Toxicofera ANCESTRAL SPECIES 20 ENSGT00390000010474 ENSGT00940000155477 ENSGT00940000164321 ENSGT00730000111133 ENSGT00940000158936 ENSGT00940000156808 ENSGT00940000159772 ENSGT00950000185671 ENSGT00510000049083.a.a ENSGT00510000049083.a.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00960000187172 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT00940000172945 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Elapidae ANCESTRAL SPECIES 15 ENSGT00940000155477 ENSGT00940000164321 ENSGT00730000111133 ENSGT00940000158936 ENSGT00940000156808 ENSGT00940000159772 ENSGT00950000185671 ENSGT00510000049083.a.a ENSGT00510000049083.a.b ENSGT01090000262429 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716.d #31 ENSGT00940000156716.c #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Elapidae_a ANCESTRAL SPECIES 42 ENSGT00940000155477 ENSGT00940000164321 ENSGT00730000111133 ENSGT00940000158936 ENSGT00940000156808 ENSGT00940000159772 ENSGT00950000185671 ENSGT00510000049083.a.a ENSGT00510000049083.a.b ENSGT01090000262429 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716.d #31 ENSGT00940000156716.c #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874.e ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Acanthophiinae ANCESTRAL SPECIES 54 ENSGT00940000164321 ENSGT00730000111133 ENSGT00940000158936 ENSGT00940000156808 ENSGT00940000159772.a ENSGT00940000159772.b ENSGT00950000185671 ENSGT00510000049083.a.a ENSGT00510000049083.a.b ENSGT01090000262429 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT01100000264337 ENSGT00940000161685.A.a Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 74 ENSPTXG00000011287 ENSPTXG00000011289 ENSPTXG00000011291 ENSPTXG00000011294 #15 ENSPTXG00000011295 #16 ENSPTXG00000011300 #19 ENSPTXG00000011302 #21 ENSPTXG00000011305 #22 ENSPTXG00000011310 #24 ENSPTXG00000011312 #25 ENSPTXG00000011323 #26 ENSPTXG00000011740 #27 ENSPTXG00000011741 ENSPTXG00000011742 ENSPTXG00000011743 #31 ENSPTXG00000011746 #31 ENSPTXG00000011748 #32 NKX3-1 (ENSPTXG00000011750) #34 ENSPTXG00000011751 #36 ENSPTXG00000011752 ENSPTXG00000011756 ENSPTXG00000011854 ENSPTXG00000011857 Eastern brown snake MODERN SPECIES 73 ENSPTXG00000007242 ENSPTXG00000007243 ENSPTXG00000007244 #15 ENSPTXG00000007246 #16 ENSPTXG00000008701 #19 ENSPTXG00000008702 #21 ENSPTXG00000008703 #22 ENSPTXG00000008704 #24 ENSPTXG00000008706 #25 ENSPTXG00000008715 #26 ENSPTXG00000009152 #27 ENSPTXG00000009153 ENSPTXG00000009159 ENSPTXG00000009160 #31 ENSPTXG00000009161 #31 ENSPTXG00000009164 #32 ENSPTXG00000009165 #36 ENSPTXG00000009167 ENSPTXG00000009172 ENSPTXG00000009429 ENSPTXG00000009431 ENSPTXG00000008323 Mainland tiger snake MODERN SPECIES 37 ENSNSUG00000000852 ENSNSUG00000000843 LSM1 (ENSNSUG00000000840) BAG4 (ENSNSUG00000000839) DDHD2 (ENSNSUG00000000387) ENSNSUG00000000376 ENSNSUG00000000370 ENSNSUG00000000368 ENSNSUG00000000367 ENSNSUG00000000366 LRRTM4 (ENSNSUG00000000364) ADRA1A (ENSNSUG00000000362) #15 DPYSL2 (ENSNSUG00000000209) #16 BNIP3L (ENSNSUG00000000192) #19 PPP2R2A (ENSNSUG00000000180) #21 EBF2 (ENSNSUG00000000106) #22 KCTD9 (ENSNSUG00000000027) #24 GNRH1 (ENSNSUG00000018479) #25 DOCK5 (ENSNSUG00000018426) #26 NEFL (ENSNSUG00000018423) #27 ENSNSUG00000018422 ENSNSUG00000018418 Blue-lipped sea krait MODERN SPECIES 258 EBF2 (ENSLLTG00000006713) #22 ENSLLTG00000006686 Indian cobra MODERN SPECIES 7 STAR (ENSNNAG00000003969) ENSNNAG00000003952 ENSNNAG00000003917 LSM1 (ENSNNAG00000003883) ENSNNAG00000003865 DDHD2 (ENSNNAG00000003793) PLPP5 (ENSNNAG00000003729) ENSNNAG00000003717 ENSNNAG00000003697 ENSNNAG00000003681 LRRTM4 (ENSNNAG00000003671) ADRA1A (ENSNNAG00000003650) #15 DPYSL2 (ENSNNAG00000003606) #16 BNIP3L (ENSNNAG00000003562) #19 PPP2R2A (ENSNNAG00000003524) #21 EBF2 (ENSNNAG00000011189) #22 KCTD9 (ENSNNAG00000011148) #24 GNRH1 (ENSNNAG00000011126) #25 DOCK5 (ENSNNAG00000010814) #26 NEFL (ENSNNAG00000010763) #27 ENSNNAG00000010639 ZAR1L (ENSNNAG00000010606) ENSNNAG00000010003 #31 ENSNNAG00000009894 #31 STC1 (ENSNNAG00000009856) #32 NKX3-1 (ENSNNAG00000009833) #34 SLC25A37 (ENSNNAG00000009806) #36 ENTPD4 (ENSNNAG00000009746) LOXL2 (ENSNNAG00000009688) R3HCC1 (ENSNNAG00000009647) ENSNNAG00000009630 Lizard DUPLICATION Lizard MODERN SPECIES 1057 ADRA1A (ENSACAG00000006376) #15 DPYSL2 (ENSACAG00000006159) #16 ENSACAG00000035783 BNIP3L (ENSACAG00000006113) #19 PPP2R2A (ENSACAG00000005972) #21 ENSACAG00000005898 #22 ENSACAG00000037573 Lizard MODERN SPECIES 1034 ENSACAG00000010823 #22 ENSACAG00000028695 KCTD9 (ENSACAG00000010866) #24 ENSACAG00000038279 DOCK5 (ENSACAG00000010981) #26 NEFL (ENSACAG00000011170) #27 ENSACAG00000011359 ENSACAG00000041047 #31 ENSACAG00000011969 #32 Archelosauria ANCESTRAL SPECIES 29 ENSGT00930000150969.A.c.a ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Cryptodira ANCESTRAL SPECIES 30 ENSGT00930000150969.A.c.a ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Testudinoidea ANCESTRAL SPECIES ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00950000185671 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Testudinidae ANCESTRAL SPECIES 31 ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00950000185671 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00960000187172 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Goode s thornscrub tortoise MODERN SPECIES 11 ENSGEVG00005009028 BMP10 (ENSGEVG00005009140) ARHGAP25 (ENSGEVG00005009174) CDS2 (ENSGEVG00005009211) PCNA (ENSGEVG00005009251) TMEM230 (ENSGEVG00005009280) SLC23A2 (ENSGEVG00005009317) RASSF2 (ENSGEVG00005009388) ENSGEVG00005009439 PRNP (ENSGEVG00005009453) LRRTM4 (ENSGEVG00005009480) ADRA1A (ENSGEVG00005009508) #15 DPYSL2 (ENSGEVG00005009589) #16 BNIP3L (ENSGEVG00005009903) #19 PPP2R2A (ENSGEVG00005009996) #21 EBF2 (ENSGEVG00005010045) #22 ENSGEVG00005010331 KCTD9 (ENSGEVG00005010357) #24 GNRH1 (ENSGEVG00005010375) #25 DOCK5 (ENSGEVG00005010465) #26 NEFL (ENSGEVG00005011350) #27 ENSGEVG00005011397 ADAM28 (ENSGEVG00005011467) #31 STC1 (ENSGEVG00005011653) #32 ENSGEVG00005011714 NKX3-1 (ENSGEVG00005011757) #34 SLC25A37 (ENSGEVG00005011795) #36 ENTPD4 (ENSGEVG00005011820) LOXL2 (ENSGEVG00005011963) R3HCC1 (ENSGEVG00005012692) ENSGEVG00005012706 Abingdon island giant tortoise MODERN SPECIES 123 ADRA1A (ENSCABG00000020453) #15 DPYSL2 (ENSCABG00000020451) #16 BNIP3L (ENSCABG00000020441) #19 PPP2R2A (ENSCABG00000020418) #21 EBF2 (ENSCABG00000020416) #22 KCTD9 (ENSCABG00000020402) #24 GNRH1 (ENSCABG00000020396) #25 DOCK5 (ENSCABG00000020382) #26 Emydidae ANCESTRAL SPECIES ENSGT00930000150969.A.c.b.b ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00950000185671 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 painted turtle MODERN SPECIES 709 ENSCPBG00000003176 BMP10 (ENSCPBG00000003155) ARHGAP25 (ENSCPBG00000003140) CDS2 (ENSCPBG00000003128) PCNA (ENSCPBG00000003114) TMEM230 (ENSCPBG00000003096) SLC23A2 (ENSCPBG00000003065) RASSF2 (ENSCPBG00000003027) ENSCPBG00000003000 ENSCPBG00000002949 LRRTM4 (ENSCPBG00000002935) ADRA1A (ENSCPBG00000002911) #15 DPYSL2 (ENSCPBG00000002884) #16 BNIP3L (ENSCPBG00000002862) #19 PPP2R2A (ENSCPBG00000002853) #21 EBF2 (ENSCPBG00000002840) #22 ENSCPBG00000002813 #23 KCTD9 (ENSCPBG00000002787) #24 ENSCPBG00000002771 GNRH1 (ENSCPBG00000002762) #25 DOCK5 (ENSCPBG00000002708) #26 NEFL (ENSCPBG00000002688) #27 ENSCPBG00000002682 ADAM28 (ENSCPBG00000002623) #31 STC1 (ENSCPBG00000002608) #32 ENSCPBG00000002598 NKX3-1 (ENSCPBG00000002587) #34 SLC25A37 (ENSCPBG00000002576) #36 ENTPD4 (ENSCPBG00000002559) LOXL2 (ENSCPBG00000002524) ENSCPBG00000002505 Three-toed box turtle MODERN SPECIES 20 ENSTMTG00000005575 BMP10 (ENSTMTG00000005616) ARHGAP25 (ENSTMTG00000005632) CDS2 (ENSTMTG00000005654) PCNA (ENSTMTG00000005686) TMEM230 (ENSTMTG00000005698) SLC23A2 (ENSTMTG00000005719) RASSF2 (ENSTMTG00000005745) ENSTMTG00000005779 PRNP (ENSTMTG00000005787) LRRTM4 (ENSTMTG00000005796) ADRA1A (ENSTMTG00000005814) #15 DPYSL2 (ENSTMTG00000006130) #16 BNIP3L (ENSTMTG00000010506) #19 PPP2R2A (ENSTMTG00000010521) #21 EBF2 (ENSTMTG00000010564) #22 ENSTMTG00000010696 KCTD9 (ENSTMTG00000010704) #24 GNRH1 (ENSTMTG00000010733) #25 DOCK5 (ENSTMTG00000010858) #26 NEFL (ENSTMTG00000011838) #27 ENSTMTG00000011860 ENSTMTG00000011868 #31 STC1 (ENSTMTG00000011903) #32 ENSTMTG00000011938 NKX3-1 (ENSTMTG00000011955) #34 SLC25A37 (ENSTMTG00000011973) #36 ENTPD4 (ENSTMTG00000011987) LOXL2 (ENSTMTG00000012011) ENSTMTG00000012028 ENSTMTG00000012039 Chinese turtle MODERN SPECIES 378 LRRTM4 (ENSPSIG00000001033) ADRA1A (ENSPSIG00000016055) #15 DPYSL2 (ENSPSIG00000016087) #16 BNIP3L (ENSPSIG00000016631) #19 PPP2R2A (ENSPSIG00000016785) #21 EBF2 (ENSPSIG00000016837) #22 CDCA2 (ENSPSIG00000017605) #23 KCTD9 (ENSPSIG00000017621) #24 GNRH1 (ENSPSIG00000006525) #25 DOCK5 (ENSPSIG00000006576) #26 NEFL (ENSPSIG00000010803) #27 ENSPSIG00000010878 Archosauria ANCESTRAL SPECIES 30 ENSGT00930000150969.A.c.b.a ENSGT00930000150969.A.c.a ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Australian saltwater crocodile MODERN SPECIES 1 ENSCPRG00005014096 ZMIZ2 (ENSCPRG00005014106) OGDH (ENSCPRG00005014134) ENSCPRG00005014148 ADRA1A (ENSCPRG00005014150) #15 DPYSL2 (ENSCPRG00005014154) #16 BNIP3L (ENSCPRG00005014164) #19 PPP2R2A (ENSCPRG00005014169) #21 EBF2 (ENSCPRG00005014176) #22 ENSCPRG00005014182 #23 KCTD9 (ENSCPRG00005014183) #24 GNRH1 (ENSCPRG00005014185) #25 DOCK5 (ENSCPRG00005014187) #26 NEFL (ENSCPRG00005014205) #27 ENSCPRG00005014206 ADAM28 (ENSCPRG00005014210) #31 STC1 (ENSCPRG00005014220) #32 ENSCPRG00005014221 ENSCPRG00005014225 #36 ENSCPRG00005014226 #36 ENTPD4 (ENSCPRG00005014227) LOXL2 (ENSCPRG00005014244) R3HCC1 (ENSCPRG00005014476) ENSCPRG00005014487 Aves ANCESTRAL SPECIES 30 ENSGT00940000156317 ENSGT00940000160547 ENSGT00940000159885 ENSGT00530000064017.b ENSGT00940000154966 ENSGT00940000158670 ENSGT00390000005154.t ENSGT00390000005154.s.a ENSGT00940000157856 ENSGT00510000046985 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b African ostrich MODERN SPECIES 291 MXD1 (ENSSCUG00000002223) C2orf42 (ENSSCUG00000002213) TIA1 (ENSSCUG00000002188) PCYOX1 (ENSSCUG00000002184) SNRPG (ENSSCUG00000002183) LRRTM4 (ENSSCUG00000002182) ADRA1A (ENSSCUG00000002179) #15 PPP2R2A (ENSSCUG00000002162) #21 EBF2 (ENSSCUG00000002156) #22 ENSSCUG00000002152 #23 KCTD9 (ENSSCUG00000002150) #24 GNRH1 (ENSSCUG00000002147) #25 ENSSCUG00000002144 DOCK5 (ENSSCUG00000002136) #26 NEFL (ENSSCUG00000002125) #27 ENSSCUG00000002124 ENSSCUG00000002121 ADAM28 (ENSSCUG00000002115) #31 STC1 (ENSSCUG00000002106) #32 ENSSCUG00000002102 SLC25A37 (ENSSCUG00000002096) #36 ENTPD4 (ENSSCUG00000002092) LOXL2 (ENSSCUG00000002089) R3HCC1 (ENSSCUG00000002087) Neognathae ANCESTRAL SPECIES 33 ENSGT00930000150969.A.c.b.a ENSGT00930000150969.A.c.a ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Galloanserae ANCESTRAL SPECIES 32 ENSGT00930000150969.A.c.b.a ENSGT00930000150969.A.c.a ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Phasianidae ANCESTRAL SPECIES 31 ENSGT00940000158488 ENSGT00940000156522 ENSGT00930000150969.A.c.b.a ENSGT00930000150969.A.c.a ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Japanese quail MODERN SPECIES 14 ANTXR1 (ENSCJPG00005011971) ENSCJPG00005011972 GKN2 (ENSCJPG00005011974) BMP10 (ENSCJPG00005011975) ARHGAP25 (ENSCJPG00005011976) CDS2 (ENSCJPG00005011977) PCNA (ENSCJPG00005011978) TMEM230 (ENSCJPG00005011979) SLC23A2 (ENSCJPG00005011980) RASSF2 (ENSCJPG00005011981) PRNP (ENSCJPG00005011982) PROM2 (ENSCJPG00005011983) DPYSL2 (ENSCJPG00005011984) #16 BNIP3L (ENSCJPG00005011985) #19 PPP2R2A (ENSCJPG00005011988) #21 EBF2 (ENSCJPG00005011991) #22 ENSCJPG00005012174 KCTD9 (ENSCJPG00005012175) #24 GNRH1 (ENSCJPG00005012176) #25 DOCK5 (ENSCJPG00005012183) #26 NEFL (ENSCJPG00005015112) #27 ENSCJPG00005015113 ADAM28 (ENSCJPG00005015114) #31 STC1 (ENSCJPG00005015115) #32 ENSCJPG00005015116 #34 SLC25A37 (ENSCJPG00005015117) #36 ENTPD4 (ENSCJPG00005015118) LOXL2 (ENSCJPG00005015119) R3HCC1 (ENSCJPG00005015120) CHMP7 (ENSCJPG00005015121) ENSCJPG00005015122 Phasianidae_b ANCESTRAL SPECIES 36 ENSGT00940000158488 ENSGT00940000156522 ENSGT00930000150969.A.c.b.a ENSGT00930000150969.A.c.a ENSGT00940000156279 ENSGT00950000183015.A ENSGT00940000158877 ENSGT00390000004965 ENSGT00390000008694.b.b ENSGT00950000182953.C.c ENSGT00940000158546 ENSGT00510000049083.b ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Turkey DUPLICATION Turkey MODERN SPECIES 16 ENSMGAG00000015582 ENSMGAG00000001356 ENSMGAG00000001314 ENSMGAG00000001293 ENSMGAG00000001276 #36 ENSMGAG00000001268 ENSMGAG00000001210 #32 ENSMGAG00000001087 #31 ENSMGAG00000020068 #31 ENSMGAG00000001031 #27 ENSMGAG00000001059 ENSMGAG00000000866 #26 ENSMGAG00000000821 #23 ENSMGAG00000000831 #24 GNRH1 (ENSMGAG00000000861) #25 ENSMGAG00000000791 #22 ENSMGAG00000021648 #22 ENSMGAG00000019257 ENSMGAG00000000768 #21 ENSMGAG00000021581 #19 ENSMGAG00000000713 ENSMGAG00000017950 ENSMGAG00000000727 ENSMGAG00000000749 #16 ENSMGAG00000000698 ENSMGAG00000000684 ENSMGAG00000000693 ENSMGAG00000000665 CDS2 (ENSMGAG00000000669) BMP10 (ENSMGAG00000020909) ANTXR1 (ENSMGAG00000000654) Turkey MODERN SPECIES 16 ENSMGAG00000001356 ENSMGAG00000001314 ENSMGAG00000001293 ENSMGAG00000001276 #36 ENSMGAG00000001268 ENSMGAG00000001210 #32 ENSMGAG00000001087 #31 ENSMGAG00000020068 #31 ENSMGAG00000001031 #27 ENSMGAG00000001059 ENSMGAG00000000866 #26 ENSMGAG00000000821 #23 ENSMGAG00000000831 #24 GNRH1 (ENSMGAG00000000861) #25 ENSMGAG00000000791 #22 ENSMGAG00000021648 #22 ENSMGAG00000019257 ENSMGAG00000000768 #21 ENSMGAG00000021581 #19 ENSMGAG00000000713 ENSMGAG00000017950 ENSMGAG00000000727 ENSMGAG00000000749 #16 ENSMGAG00000000698 ENSMGAG00000000684 ENSMGAG00000000693 ENSMGAG00000000665 CDS2 (ENSMGAG00000000669) BMP10 (ENSMGAG00000020909) ANTXR1 (ENSMGAG00000000654) ENSMGAG00000000661 Chicken MODERN SPECIES 14 ANTXR1 (ENSGALG00010017671) GKN1 (ENSGALG00010020264) GKN2 (ENSGALG00010019314) BMP10 (ENSGALG00010020231) ARHGAP25 (ENSGALG00010020323) CDS2 (ENSGALG00010020362) PCNA (ENSGALG00010020374) TMEM230 (ENSGALG00010020377) SLC23A2 (ENSGALG00010020392) RASSF2 (ENSGALG00010018233) PRNP (ENSGALG00010018261) PROM2 (ENSGALG00010018273) DPYSL2 (ENSGALG00010018309) #16 BNIP3L (ENSGALG00010018342) #19 PPP2R2A (ENSGALG00010018438) #21 EBF2 (ENSGALG00010018726) #22 ENSGALG00010018862 CDCA2 (ENSGALG00010018865) #23 KCTD9 (ENSGALG00010018872) #24 GNRH1 (ENSGALG00010018891) #25 DOCK5 (ENSGALG00010018915) #26 NEFL (ENSGALG00010018944) #27 NEFM (ENSGALG00010018973) ADAM28 (ENSGALG00010019012) #31 STC1 (ENSGALG00010019097) #32 NKX2-6 (ENSGALG00010020189) NKX3-1 (ENSGALG00010020201) #34 SLC25A37 (ENSGALG00010020244) #36 ENTPD4 (ENSGALG00010019355) LOXL2 (ENSGALG00010020025) R3HCC1 (ENSGALG00010020055) Anatidae ANCESTRAL SPECIES 53 ENSGT00940000159446 ENSGT00390000011031 ENSGT00940000154962.A ENSGT00390000011206.a ENSGT00510000046985 ENSGT00390000006707 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000157556 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Duck MODERN SPECIES 14 BMP10 (ENSAPLG00000016219) ARHGAP25 (ENSAPLG00000016184) CDS2 (ENSAPLG00000016097) PCNA (ENSAPLG00000022945) TMEM230 (ENSAPLG00000016058) SLC23A2 (ENSAPLG00000015862) RASSF2 (ENSAPLG00000015822) PROM2 (ENSAPLG00000015738) TIA1 (ENSAPLG00000009953) ENSAPLG00000026556 LRRTM4 (ENSAPLG00000002047) ADRA1A (ENSAPLG00000007432) #15 DPYSL2 (ENSAPLG00000007595) #16 BNIP3L (ENSAPLG00000008709) #19 PPP2R2A (ENSAPLG00000008811) #21 EBF2 (ENSAPLG00000009260) #22 ENSAPLG00000024715 #23 KCTD9 (ENSAPLG00000009567) #24 GNRH1 (ENSAPLG00000009893) #25 DOCK5 (ENSAPLG00000010000) #26 NEFL (ENSAPLG00000028546) #27 ENSAPLG00000019722 ENSAPLG00000012861 STC1 (ENSAPLG00000014693) #32 ADAM28 (ENSAPLG00000013050) #31 NKX3-1 (ENSAPLG00000028169) #34 ENTPD4 (ENSAPLG00000014823) LOXL2 (ENSAPLG00000006034) ENSAPLG00000006017 RHOBTB2 (ENSAPLG00000005141) ENSAPLG00000028005 Pink-footed goose DUPLICATION Pink-footed goose MODERN SPECIES 148 MXD1 (ENSABRG00000019829) C2orf42 (ENSABRG00000019826) TIA1 (ENSABRG00000019777) PCYOX1 (ENSABRG00000019771) SNRPG (ENSABRG00000019767) ENSABRG00000019766 LRRTM4 (ENSABRG00000019759) ADRA1A (ENSABRG00000019738) #15 DPYSL2 (ENSABRG00000019732) #16 BNIP3L (ENSABRG00000019720) #19 PPP2R2A (ENSABRG00000019712) #21 ENSABRG00000019708 #22 ENSABRG00000019700 #22 ENSABRG00000019687 #23 KCTD9 (ENSABRG00000019677) #24 GNRH1 (ENSABRG00000019675) #25 DOCK5 (ENSABRG00000018224) #26 NEFL (ENSABRG00000018141) #27 ENSABRG00000018139 ADAM28 (ENSABRG00000018129) #31 STC1 (ENSABRG00000018125) #32 ENSABRG00000018122 NKX3-1 (ENSABRG00000018119) #34 SLC25A37 (ENSABRG00000018116) #36 ENTPD4 (ENSABRG00000018111) LOXL2 (ENSABRG00000018099) R3HCC1 (ENSABRG00000018096) ENSABRG00000018093 Pink-footed goose MODERN SPECIES 148 MXD1 (ENSABRG00000019829) C2orf42 (ENSABRG00000019826) TIA1 (ENSABRG00000019777) PCYOX1 (ENSABRG00000019771) SNRPG (ENSABRG00000019767) ENSABRG00000019766 LRRTM4 (ENSABRG00000019759) ADRA1A (ENSABRG00000019738) #15 DPYSL2 (ENSABRG00000019732) #16 BNIP3L (ENSABRG00000019720) #19 PPP2R2A (ENSABRG00000019712) #21 ENSABRG00000019708 #22 ENSABRG00000019700 #22 ENSABRG00000019687 #23 KCTD9 (ENSABRG00000019677) #24 GNRH1 (ENSABRG00000019675) #25 DOCK5 (ENSABRG00000018224) #26 NEFL (ENSABRG00000018141) #27 ENSABRG00000018139 ADAM28 (ENSABRG00000018129) #31 STC1 (ENSABRG00000018125) #32 ENSABRG00000018122 NKX3-1 (ENSABRG00000018119) #34 SLC25A37 (ENSABRG00000018116) #36 ENTPD4 (ENSABRG00000018111) LOXL2 (ENSABRG00000018099) R3HCC1 (ENSABRG00000018096) Neognathae_b ANCESTRAL SPECIES 28 ENSGT00440000033552 ENSGT00940000159299 ENSGT00730000111237 ENSGT00940000159446 ENSGT00390000011031 ENSGT00940000154962.A ENSGT00390000011206.a ENSGT00510000046985 ENSGT00390000006707 ENSGT00940000160058 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Passeriformes ANCESTRAL SPECIES 26 ENSGT00940000154966 ENSGT00940000158670 ENSGT00390000005154.s.a ENSGT00940000157856 ENSGT00390000011031 ENSGT00940000154962.A ENSGT00390000011206.a ENSGT00510000046985 ENSGT00390000006707 ENSGT00940000160058 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000162737 #33 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b Passeriformes_d ANCESTRAL SPECIES 30 ENSGT00940000154966 ENSGT00940000158670 ENSGT00390000005154.s.a ENSGT00940000157856 ENSGT00390000011031 ENSGT00940000154962.A.r ENSGT00390000011206.a ENSGT00510000046985 ENSGT00390000006707 ENSGT00940000160058 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a.h #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a.k ENSGT00940000157037.b.b ENSGT00530000063711.a.l Flycatcher MODERN SPECIES 14 ENSFALG00000024960 ENSFALG00000024974 ENSFALG00000024570 ENSFALG00000024733 ENSFALG00000008322 ENSFALG00000024274 PCYOX1 (ENSFALG00000008352) SNRPG (ENSFALG00000008384) ENSFALG00000014930 ENSFALG00000011349 ENSFALG00000025071 ADRA1A (ENSFALG00000011334) #15 ENSFALG00000011296 #16 BNIP3L (ENSFALG00000023027) #19 PPP2R2A (ENSFALG00000025527) #21 EBF2 (ENSFALG00000011234) #22 KCTD9 (ENSFALG00000028013) #24 GNRH1 (ENSFALG00000011190) #25 DOCK5 (ENSFALG00000011176) #26 NEFL (ENSFALG00000011160) #27 ENSFALG00000011150 ADAM28 (ENSFALG00000011137) #31 STC1 (ENSFALG00000011130) #32 ENSFALG00000015342 NKX3-1 (ENSFALG00000028347) #34 SLC25A37 (ENSFALG00000011115) #36 ENSFALG00000022939 ENTPD4 (ENSFALG00000023188) ENSFALG00000011108 LOXL2 (ENSFALG00000011070) ENSFALG00000024066 Passeriformes_g ANCESTRAL SPECIES 33 ENSGT00950000182943.kb.b.a.b.b ENSGT00940000159012.ab ENSGT00550000074946 ENSGT00940000159904 ENSGT00390000011031 ENSGT00940000154962.A.r.b ENSGT00390000011206.a ENSGT00510000046985 ENSGT00390000006707 ENSGT00940000160058 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a.h #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT01060000249641 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a.k ENSGT00940000157037.b.b Medium ground finch MODERN SPECIES 217 ADRA1A (ENSGFOG00000013981) #15 DPYSL2 (ENSGFOG00000013979) #16 BNIP3L (ENSGFOG00000013977) #19 PPP2R2A (ENSGFOG00000013976) #21 EBF2 (ENSGFOG00000013975) #22 ENSGFOG00000013972 #23 KCTD9 (ENSGFOG00000013969) #24 GNRH1 (ENSGFOG00000013967) #25 DOCK5 (ENSGFOG00000012725) #26 NEFL (ENSGFOG00000012553) #27 ENSGFOG00000012548 ENSGFOG00000012545 #31 STC1 (ENSGFOG00000012542) #32 NKX3-1 (ENSGFOG00000012539) #34 ENSGFOG00000012538 SLC25A37 (ENSGFOG00000012536) #36 ENTPD4 (ENSGFOG00000012535) Passeroidea ANCESTRAL SPECIES 31 ENSGT00940000154966 ENSGT00940000158670 ENSGT00390000005154.s.a ENSGT00940000157856 ENSGT00390000011031 ENSGT00940000154962.A.r.a ENSGT00390000011206.a ENSGT00510000046985 ENSGT00390000006707 ENSGT00940000160058 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a.h #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT01060000249641 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a.k ENSGT00940000157037.b.b ENSGT00720000108860 Zebra finch MODERN SPECIES 15 ENSTGUG00000020524 ENSTGUG00000027637 ENSTGUG00000019520 ENSTGUG00000022358 ENSTGUG00000021177 ENSTGUG00000017307 ENSTGUG00000023851 ENSTGUG00000029105 ENSTGUG00000023568 SNRPG (ENSTGUG00000004149) LRRTM4 (ENSTGUG00000004157) ADRA1A (ENSTGUG00000004160) #15 DPYSL2 (ENSTGUG00000004168) #16 BNIP3L (ENSTGUG00000020038) #19 PPP2R2A (ENSTGUG00000004235) #21 EBF2 (ENSTGUG00000004267) #22 ENSTGUG00000028331 #23 KCTD9 (ENSTGUG00000004348) #24 GNRH1 (ENSTGUG00000004367) #25 DOCK5 (ENSTGUG00000004369) #26 NEFL (ENSTGUG00000004464) #27 ENSTGUG00000004494 ADAM28 (ENSTGUG00000004505) #31 STC1 (ENSTGUG00000028600) #32 ENSTGUG00000021541 SLC25A37 (ENSTGUG00000025934) #36 ENTPD4 (ENSTGUG00000017284) LOXL2 (ENSTGUG00000017286) R3HCC1 (ENSTGUG00000020064) ENSTGUG00000021644 CHMP7 (ENSTGUG00000017288) Common canary MODERN SPECIES 50 ADRA1A (ENSSCAG00000017145) #15 DPYSL2 (ENSSCAG00000017143) #16 BNIP3L (ENSSCAG00000017138) #19 PPP2R2A (ENSSCAG00000017129) #21 EBF2 (ENSSCAG00000017126) #22 ENSSCAG00000017124 KCTD9 (ENSSCAG00000017122) #24 GNRH1 (ENSSCAG00000017120) #25 DOCK5 (ENSSCAG00000017108) #26 ENSSCAG00000017105 STC1 (ENSSCAG00000017102) #32 ENSSCAG00000017101 ENSSCAG00000017100 ENSSCAG00000017098 #36 NEFL (ENSSCAG00000017093) #27 ENSSCAG00000017091 ENSSCAG00000017089 #31 UNC5D (ENSSCAG00000017086) ENSSCAG00000017083 ENSSCAG00000017081 Great tit MODERN SPECIES 14 STAMBP (ENSPMJG00000015788) ACTG2 (ENSPMJG00000015791) ENSPMJG00000015792 C2orf42 (ENSPMJG00000015793) ENSPMJG00000015819 ENSPMJG00000015820 PCYOX1 (ENSPMJG00000015821) SNRPG (ENSPMJG00000015822) ENSPMJG00000015824 LRRTM4 (ENSPMJG00000015826) ADRA1A (ENSPMJG00000015830) #15 DPYSL2 (ENSPMJG00000015831) #16 BNIP3L (ENSPMJG00000015832) #19 PPP2R2A (ENSPMJG00000015834) #21 ENSPMJG00000015835 EBF2 (ENSPMJG00000015836) #22 ENSPMJG00000015838 #23 KCTD9 (ENSPMJG00000015839) #24 GNRH1 (ENSPMJG00000015843) #25 DOCK5 (ENSPMJG00000015905) #26 NEFL (ENSPMJG00000017732) #27 ENSPMJG00000017733 ADAM28 (ENSPMJG00000017734) #31 STC1 (ENSPMJG00000017735) #32 NKX2-6 (ENSPMJG00000017736) #33 NKX3-1 (ENSPMJG00000017737) #34 SLC25A37 (ENSPMJG00000017738) #36 ENTPD4 (ENSPMJG00000017740) LOXL2 (ENSPMJG00000017742) R3HCC1 (ENSPMJG00000017743) ENSPMJG00000017744 Neognathae_c ANCESTRAL SPECIES 30 ENSGT00440000033552 ENSGT00940000159299 ENSGT00730000111237 ENSGT00940000159446 ENSGT00390000011031 ENSGT00940000154962.A ENSGT00390000011206.a ENSGT00510000046985 ENSGT00390000006707 ENSGT00940000160058 ENSGT00940000154909 ENSGT00940000159105 #15 ENSGT01030000234527.A.a.b.a.a #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.a #21 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716 #31 ENSGT00390000005989.b #32 ENSGT00940000160930 #34 ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00530000063711.a ENSGT00940000157037.b.b ENSGT00720000108860 Golden eagle MODERN SPECIES 4 TMED4 (ENSACCG00020009529) DDX56 (ENSACCG00020009504) NPC1L1 (ENSACCG00020009363) ENSACCG00020009152 C2orf42 (ENSACCG00020009129) TIA1 (ENSACCG00020009086) PCYOX1 (ENSACCG00020009055) SNRPG (ENSACCG00020009043) FAM136A (ENSACCG00020009033) TGFA (ENSACCG00020009017) LRRTM4 (ENSACCG00020008990) ADRA1A (ENSACCG00020008983) #15 DPYSL2 (ENSACCG00020008944) #16 BNIP3L (ENSACCG00020008907) #19 PPP2R2A (ENSACCG00020008869) #21 EBF2 (ENSACCG00020008815) #22 KCTD9 (ENSACCG00020008775) #24 GNRH1 (ENSACCG00020008754) #25 DOCK5 (ENSACCG00020008101) #26 NEFL (ENSACCG00020007193) #27 ENSACCG00020007176 ADAM28 (ENSACCG00020007154) #31 STC1 (ENSACCG00020007143) #32 ENSACCG00020007127 NKX3-1 (ENSACCG00020007121) #34 SLC25A37 (ENSACCG00020007110) #36 ENTPD4 (ENSACCG00020007093) LOXL2 (ENSACCG00020007060) R3HCC1 (ENSACCG00020007034) ENSACCG00020007019 CHMP7 (ENSACCG00020007000) Kakapo MODERN SPECIES 14 ENSSHBG00005012035 GPAT4 (ENSSHBG00005000748) NKX6-3 (ENSSHBG00005000754) ENSSHBG00005000758 ANK1 (ENSSHBG00005005769) KAT6A (ENSSHBG00005006175) AP3M2 (ENSSHBG00005006241) PLAT (ENSSHBG00005006275) IKBKB (ENSSHBG00005006488) VDAC3 (ENSSHBG00005007059) POLB (ENSSHBG00005007095) ADRA1A (ENSSHBG00005007111) #15 DPYSL2 (ENSSHBG00005007213) #16 BNIP3L (ENSSHBG00005007265) #19 PPP2R2A (ENSSHBG00005007294) #21 EBF2 (ENSSHBG00005007343) #22 ENSSHBG00005007388 #23 KCTD9 (ENSSHBG00005007428) #24 GNRH1 (ENSSHBG00005007515) #25 DOCK5 (ENSSHBG00005007942) #26 NEFL (ENSSHBG00005008568) #27 ENSSHBG00005008574 ENSSHBG00005008576 ADAM28 (ENSSHBG00005008594) #31 STC1 (ENSSHBG00005008617) #32 ENSSHBG00005008627 SLC25A37 (ENSSHBG00005008635) #36 ENTPD4 (ENSSHBG00005008643) LOXL2 (ENSSHBG00005008682) R3HCC1 (ENSSHBG00005009137) ENSSHBG00005009149 Anura ANCESTRAL SPECIES 30 ENSGT00390000016333 ENSGT00940000153139.B.a ENSGT00940000159868 ENSGT00940000158603.f ENSGT00940000155068.b ENSGT00940000159352 ENSGT00390000003878 ENSGT00390000012859 ENSGT00940000158663 ENSGT00950000183082.b.a ENSGT00940000161454.i.b.b ENSGT01060000248581.E.d.b.a.b.a.a ENSGT01030000234527.A.a.b.a.a.n #16 ENSGT00390000013415.a.b #19 ENSGT00950000182864.a.b.b.b ##21 ENSGT00950000182859.A.a.a.b #22 ENSGT00960000187172 ENSGT00940000154314 #24 ENSGT00390000008225 #25 ENSGT00940000157734 #26 ENSGT00940000156208 #27 ENSGT00940000161685.A.a ENSGT00940000156716.a.a #31 ENSGT00940000156716.b #31 ENSGT00940000156716.a.b #31 ENSGT00390000005989.b #32 ENSGT00940000165452.b ENSGT00940000158607 #36 ENSGT01100000263540.B.d ENSGT00940000155874 ENSGT00940000179863 Frog MODERN SPECIES 3 ENSXETG00000039498 ENSXETG00000046753 ENSXETG00000042638 ENSXETG00000048894 ENSXETG00000042357 ENSXETG00000038456 ENSXETG00000043011 ENSXETG00000040350 ENSXETG00000035080 ENSXETG00000042507 ENSXETG00000043640 ENSXETG00000039632 dpysl2 (ENSXETG00000034346) #16 bnip3l (ENSXETG00000046362) #19 ppp2r2a (ENSXETG00000010159) ##21 ebf2 (ENSXETG00000010153) #22 cdca2 (ENSXETG00000033409) kctd9 (ENSXETG00000034350) #24 gnrh1 (ENSXETG00000010147) #25 dock5 (ENSXETG00000031383) #26 nefl (ENSXETG00000010142) #27 nefm (ENSXETG00000010128) adam28.1 (ENSXETG00000030278) #31 adam28.2 (ENSXETG00000031918) #31 ENSXETG00000036350 #31 ENSXETG00000040043 #31 ENSXETG00000039067 #31 ENSXETG00000043152 #31 ENSXETG00000036133 #31 ENSXETG00000040335 #31 ENSXETG00000032381 #31 Leishan spiny toad MODERN SPECIES 6 ENSLLEG00000018128 MAK16 (ENSLLEG00000018049) ENSLLEG00000018021 ENSLLEG00000017890 ENSLLEG00000017794 ENSLLEG00000017768 ENSLLEG00000017680 ENSLLEG00000017607 ENSLLEG00000017558 ENSLLEG00000017530 ENSLLEG00000016642 #16 ENSLLEG00000016564 ENSLLEG00000016538 BNIP3L (ENSLLEG00000016427) #19 ENSLLEG00000015793 ##21 EBF2 (ENSLLEG00000015288) #22 ENSLLEG00000015043 KCTD9 (ENSLLEG00000014581) #24 DOCK5 (ENSLLEG00000014183) #26 NEFL (ENSLLEG00000014130) #27 ENSLLEG00000013987 ENSLLEG00000013422 #31 ENSLLEG00000012998 #31 ENSLLEG00000012950 ENSLLEG00000012926 STC1 (ENSLLEG00000012894) #32 ENSLLEG00000012872 NKX3-1 (ENSLLEG00000012849) #34 SLC25A37 (ENSLLEG00000012777) #36 ENTPD4 (ENSLLEG00000012420) ENSLLEG00000012314 Coelacanth MODERN SPECIES 332 ENSLACG00000017847 DPYSL2 (ENSLACG00000017733) #16 BNIP3L (ENSLACG00000017677) #19 PPP2R2A (ENSLACG00000017581) #21 TMEM230 (ENSLACG00000017549) EBF2 (ENSLACG00000017271) #22 KCTD9 (ENSLACG00000016937) #24 GNRH1 (ENSLACG00000016897) #25 DOCK5 (ENSLACG00000016696) #26 NEFL (ENSLACG00000016495) #27 ENSLACG00000016414 ADAM28 (ENSLACG00000015824) #31 ENSLACG00000015689 STC1 (ENSLACG00000014878) #32 ENSLACG00000014473 SLC25A37 (ENSLACG00000014043) #36 ENTPD4 (ENSLACG00000013528) LOXL2 (ENSLACG00000012041) R3HCC1 (ENSLACG00000011894) GOLGA7 (ENSLACG00000011323) sfrp1b (ENSLACG00000009826) Actinopterygii ANCESTRAL SPECIES 436 ENSGT00950000183185.c.a.a ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000161711 ENSGT00940000156009.A ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760 ENSGT00940000168975 Neopterygii ANCESTRAL SPECIES 361 ENSGT00950000183185.c.a.a ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000161711 ENSGT00940000156009.A ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760 ENSGT00940000168975 Osteoglossocephalai ANCESTRAL SPECIES 5 ENSGT00940000157987 ENSGT00730000112955 ENSGT00390000005772 ENSGT00530000063370.b ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT01050000244898.b.a ENSGT00940000164825 ENSGT00390000009670 ENSGT00940000153849.a.a.a ENSGT00940000153849.a.b ENSGT00500000044984 ENSGT00390000012759 ENSGT00940000155149 ENSGT00940000155449 ENSGT00940000163293.c.b Clupeocephala ANCESTRAL SPECIES 22 ENSGT00940000157987 ENSGT00730000112955 ENSGT00390000005772 ENSGT00530000063370.b ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT01050000244898.b.a ENSGT00940000164825 ENSGT00390000009670 ENSGT00940000153849.a.a.a ENSGT00390000012759 ENSGT00940000163293.c.a ENSGT00940000160182 ENSGT00940000157897.b ENSGT00940000153594.c.e.a ENSGT00390000007883 Otomorpha ANCESTRAL SPECIES 443 ENSGT00940000155760.t.a ENSGT00940000163919.a ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.u ENSGT00940000156009.A.c ENSGT00390000007992 ENSGT00390000001901 ENSGT00950000183185.c.a.a.bb.a.b ENSGT00940000156855.c ENSGT00940000154284.b ENSGT00940000161655 Otophysi ANCESTRAL SPECIES 256 ENSGT00940000153594.c.e.a ENSGT00940000157897.b ENSGT00940000160182 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00940000159627 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000163919.a ENSGT00940000164890.b ENSGT00390000007992 ENSGT00390000001901 ENSGT00950000183185.c.a.a.bb.a.b ENSGT00940000156855.c ENSGT00940000177369 ENSGT00940000154284.b ENSGT00940000161655 ENSGT00940000155998 ENSGT00490000043385 ENSGT00940000156859 Characiphysae ANCESTRAL SPECIES 129 ENSGT00940000153594.c.e.a ENSGT00940000157897.b ENSGT00940000160182 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00940000159627 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000163919.a ENSGT00940000164890.b ENSGT00390000007992 ENSGT00390000001901 ENSGT00950000183185.c.a.a.bb.a.b ENSGT00940000156855.c ENSGT00940000177369 ENSGT00940000154284.b ENSGT00940000161655 ENSGT00940000155998 ENSGT00490000043385 ENSGT00940000153241.A.cb ENSGT00390000001803 ENSGT00940000158691 Channel catfish MODERN SPECIES 14 ssh1 (ENSIPUG00000021080) DAO (ENSIPUG00000021057) SVOP (ENSIPUG00000020994) ENSIPUG00000020947 ENSIPUG00000020935 HECTD4 (ENSIPUG00000020876) SDS (ENSIPUG00000020866) HIP1R (ENSIPUG00000020815) kmt5ab (ENSIPUG00000020804) rilpl2 (ENSIPUG00000020800) mtrfr (ENSIPUG00000020793) arl6ip4 (ENSIPUG00000020789) MTHFD2 (ENSIPUG00000020776) mob1a (ENSIPUG00000020754) dguok (ENSIPUG00000020750) ebf2 (ENSIPUG00000020735) #22 ank1a (ENSIPUG00000020684) spaw (ENSIPUG00000020679) usp39 (ENSIPUG00000020671) c22h2orf68 (ENSIPUG00000020652) MAT2A (ENSIPUG00000020619) INPP5J (ENSIPUG00000020611) selenom (ENSIPUG00000020604) ENSIPUG00000020584 ENSIPUG00000020568 CCNO (ENSIPUG00000020561) isca1 (ENSIPUG00000020544) psat1 (ENSIPUG00000020490) sra1 (ENSIPUG00000020481) mlxip (ENSIPUG00000020430) ung (ENSIPUG00000020417) Characiphysae_b ANCESTRAL SPECIES 183 ENSGT00940000153594.c.e.a ENSGT00940000157897.b ENSGT00940000160182 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00940000159627 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000163919.a ENSGT00940000164890.b ENSGT00390000007992 ENSGT00390000001901 ENSGT00950000183185.c.a.a.bb.a.b ENSGT00940000156855.c ENSGT00940000177369 ENSGT00940000154284.b ENSGT00940000161655 Electric eel MODERN SPECIES 269 psmb7 (ENSEEEG00000010340) NEK6 (ENSEEEG00000010267) DENND1A (ENSEEEG00000010110) hip1rb (ENSEEEG00000010085) rilpl2 (ENSEEEG00000010083) kmt5ab (ENSEEEG00000010082) CDK2AP1 (ENSEEEG00000010078) mtrfr (ENSEEEG00000010077) PITPNM2 (ENSEEEG00000009838) arl6ip4 (ENSEEEG00000009829) mthfd2 (ENSEEEG00000009823) mob1a (ENSEEEG00000009801) dguok (ENSEEEG00000009800) ebf2 (ENSEEEG00000009793) #22 ank1a (ENSEEEG00000004856) spaw (ENSEEEG00000004736) sftpbb (ENSEEEG00000004732) usp39 (ENSEEEG00000004583) si:ch211-283h6.4 (ENSEEEG00000004574) mat2ab (ENSEEEG00000004573) INPP5J (ENSEEEG00000004572) selenom (ENSEEEG00000004571) ENSEEEG00000004569 Characoidei ANCESTRAL SPECIES 222 ENSGT00940000153594.c.e.a ENSGT00940000157897.b ENSGT00940000160182 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00940000159627 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000163919.a ENSGT00940000164890.b ENSGT00390000007992 ENSGT00390000001901 ENSGT00950000183185.c.a.a.bb.a.b ENSGT00940000156855.c ENSGT00940000177369 ENSGT00940000154284.b ENSGT00940000161655 Red-bellied piranha MODERN SPECIES 271 eif2b1 (ENSPNAG00000020198) tmed2 (ENSPNAG00000003636) vps33a (ENSPNAG00000020114) zcchc8 (ENSPNAG00000020069) hip1rb (ENSPNAG00000020044) RILPL1 (ENSPNAG00000019828) rilpl2 (ENSPNAG00000019819) kmt5ab (ENSPNAG00000019801) CDK2AP1 (ENSPNAG00000019785) mtrfr (ENSPNAG00000019769) PITPNM2 (ENSPNAG00000019721) arl6ip4 (ENSPNAG00000019444) mthfd2 (ENSPNAG00000019432) mob1a (ENSPNAG00000019380) dguok (ENSPNAG00000019358) ebf2 (ENSPNAG00000019339) #22 ank1a (ENSPNAG00000019240) ENSPNAG00000018858 ENSPNAG00000018845 usp39 (ENSPNAG00000018831) si:ch211-283h6.4 (ENSPNAG00000018774) mat2ab (ENSPNAG00000018750) INPP5J (ENSPNAG00000018716) ENSPNAG00000003549 selenom (ENSPNAG00000018679) SMTN (ENSPNAG00000018622) Mexicana tetra MODERN SPECIES 124 mthfd2 (ENSAMXG00000009018) mob1a (ENSAMXG00000031172) dguok (ENSAMXG00000019832) ENSAMXG00000036760 ebf2 (ENSAMXG00000021198) #22 ank1a (ENSAMXG00000021179) ENSAMXG00000036948 spaw (ENSAMXG00000021167) sftpbb (ENSAMXG00000021161) usp39 (ENSAMXG00000021157) ENSAMXG00000038290 mat2ab (ENSAMXG00000032698) ENSAMXG00000035124 ENSAMXG00000038733 Cyprinoidei ANCESTRAL SPECIES 145 ENSGT00940000158691 ENSGT00390000003405 ENSGT00920000149180.b ENSGT00950000182859.A.a.a.b #22 ENSGT00390000008142 ENSGT00940000158617 ENSGT00940000168076 ENSGT00940000159458 ENSGT00940000158378 ENSGT00940000157596 ENSGT00940000160838 ENSGT00940000164978.b ENSGT00940000153322.B.d.b ENSGT00940000159385.a.b ENSGT01030000234788 ENSGT00390000017765.a ENSGT00940000154361.A ENSGT00390000014424 ENSGT00940000155647.bb Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 521 ENSGT00940000167701.b.d ENSGT00390000010028.r ENSGT00940000155122.a.b ENSGT00390000011475.f ENSGT00730000111142.k ENSGT00940000158691.b ENSGT00390000003405.q.b ENSGT00920000149180.b.f ENSGT00950000182859.A.a.a.b.q #22 ENSGT00940000162883.t ENSGT00940000165599.C.b ENSGT00390000008142 ENSGT00940000158617.g.a ENSGT00940000159458.h ENSGT00940000158378.d ENSGT00940000157596.e ENSGT00940000164978.b.a ENSGT00940000153322.B.d.b.a ENSGT00940000159385.a.b.a ENSGT00390000017765.a.a ENSGT00940000154361.A.c Goldfish MODERN SPECIES 44 ENSCARG00000002914 ENSCARG00000002916 KCNAB3 (ENSCARG00000002935) slc25a11 (ENSCARG00000003014) spag7 (ENSCARG00000003023) ENSCARG00000003037 gtf3aa (ENSCARG00000003048) ENSCARG00000003064 ENSCARG00000003066 CLIP1 (ENSCARG00000003081) ENSCARG00000003110 rsrc2 (ENSCARG00000003141) mlxip (ENSCARG00000003162) sebox (ENSCARG00000003189) unga (ENSCARG00000003198) ebf2 (ENSCARG00000003227) #22 si:dkey-251i10.2 (ENSCARG00000003285) si:dkey-251i10.3 (ENSCARG00000003325) zbtb20 (ENSCARG00000003693) ENSCARG00000003712 b4galt4 (ENSCARG00000003732) CASR (ENSCARG00000003748) zgc:175280 (ENSCARG00000003769) si:ch211-271b14.1 (ENSCARG00000003777) tagln3a (ENSCARG00000003785) rom1a (ENSCARG00000003791) RPS6KA4 (ENSCARG00000004035) FLRT1 (ENSCARG00000005110) stip1 (ENSCARG00000005151) FERMT3 (ENSCARG00000005378) kat5b (ENSCARG00000005915) Cyprininae_a ANCESTRAL SPECIES 360 ENSGT00390000001777.f ENSGT00940000163054.g.a ENSGT00390000013444.a.b.b.a.a ENSGT00940000154911.z ENSGT00940000159375.c.a.f ENSGT00940000161083.f ENSGT00940000159921.c.a ENSGT00940000167701.b.d ENSGT00390000010028.r ENSGT00940000155122.a.b ENSGT00390000011475.f ENSGT00730000111142.k ENSGT00940000158691.b ENSGT00390000003405.q.b ENSGT00920000149180.b.f ENSGT00950000182859.A.a.a.b.q #22 ENSGT00940000162883.t ENSGT00940000165599.C.b ENSGT00390000008142 ENSGT00940000158617.g.a ENSGT00940000159458.h ENSGT00940000158378.d ENSGT00940000157596.e ENSGT00940000160838 ENSGT00940000164978.b.a ENSGT00940000153322.B.d.b.a ENSGT00940000159385.a.b.a Golden-line barbel DUPLICATION Golden-line barbel MODERN SPECIES 617 unga (ENSSGRG00000033819) sebox (ENSSGRG00000033821) ENSSGRG00000033822 sebox (ENSSGRG00000033823) ebf2 (ENSSGRG00000033825) #22 ebf2 (ENSSGRG00000033828) #22 ENSSGRG00000033832 si:dkey-251i10.2 (ENSSGRG00000033905) si:dkey-251i10.3 (ENSSGRG00000033907) ENSSGRG00000034076 zbtb20 (ENSSGRG00000034078) ENSSGRG00000034081 b4galt4 (ENSSGRG00000034084) CASR (ENSSGRG00000034088) eif4e1b (ENSSGRG00000034121) zgc:175280 (ENSSGRG00000034123) ENSSGRG00000034124 ENSSGRG00000034125 abhd10a (ENSSGRG00000034126) gtf3aa (ENSSGRG00000034128) ENSSGRG00000034130 Golden-line barbel MODERN SPECIES 617 unga (ENSSGRG00000033819) sebox (ENSSGRG00000033821) ENSSGRG00000033822 sebox (ENSSGRG00000033823) ebf2 (ENSSGRG00000033825) #22 ebf2 (ENSSGRG00000033828) #22 ENSSGRG00000033832 si:dkey-251i10.2 (ENSSGRG00000033905) si:dkey-251i10.3 (ENSSGRG00000033907) ENSSGRG00000034076 zbtb20 (ENSSGRG00000034078) ENSSGRG00000034081 b4galt4 (ENSSGRG00000034084) CASR (ENSSGRG00000034088) eif4e1b (ENSSGRG00000034121) zgc:175280 (ENSSGRG00000034123) ENSSGRG00000034124 ENSSGRG00000034125 abhd10a (ENSSGRG00000034126) gtf3aa (ENSSGRG00000034128) Common carp reference MODERN SPECIES 7 ENSCCRG00000056484 ENSCCRG00000077329 kat5b (ENSCCRG00000031080) FERMT3 (ENSCCRG00000011105) stip1 (ENSCCRG00000032172) FLRT1 (ENSCCRG00000063342) ENSCCRG00000049684 rom1a (ENSCCRG00000049676) ENSCCRG00000069018 CLIP1 (ENSCCRG00000072316) ENSCCRG00000041075 rsrc2 (ENSCCRG00000041079) mlxip (ENSCCRG00000042989) unga (ENSCCRG00000080554) sebox (ENSCCRG00000043330) ebf2 (ENSCCRG00000043349) #22 si:dkey-251i10.2 (ENSCCRG00000021227) si:dkey-251i10.3 (ENSCCRG00000002692) zbtb20 (ENSCCRG00000060681) ENSCCRG00000054973 b4galt4 (ENSCCRG00000053945) ENSCCRG00000051265 eif4e1b (ENSCCRG00000051287) zgc:175280 (ENSCCRG00000064799) si:ch211-271b14.1 (ENSCCRG00000067858) tagln3a (ENSCCRG00000069923) abhd10a (ENSCCRG00000078286) gsx1 (ENSCCRG00000072294) gtf3aa (ENSCCRG00000020574) ENSCCRG00000066279 ENSCCRG00000029932 Cyprininae ANCESTRAL SPECIES 700 ENSGT00940000159375.c.a.e ENSGT00940000161083.e ENSGT00940000159921.c.b ENSGT00940000167701.b.c ENSGT00390000010028.q ENSGT00940000155122.a.a ENSGT00390000011475.e ENSGT00730000111142.l ENSGT00940000158691.a ENSGT00390000003405.q.a ENSGT00920000149180.b.e ENSGT00950000182859.A.a.a.b.r #22 Goldfish MODERN SPECIES 869 zcchc8 (ENSCARG00000032755) ENSCARG00000032744 rsrc2 (ENSCARG00000032730) mlxip (ENSCARG00000032540) unga (ENSCARG00000032481) sebox (ENSCARG00000032471) ebf2 (ENSCARG00000032449) #22 Cyprininae_a ANCESTRAL SPECIES 63 ENSGT00940000158691.a ENSGT00390000003405.q.a ENSGT00920000149180.b.e ENSGT00950000182859.A.a.a.b.r #22 ENSGT00940000165599.C.a ENSGT00940000158617.g.b ENSGT00940000159458.g ENSGT00940000158378.c ENSGT00940000157596.f ENSGT00940000164978.b.b ENSGT00940000153322.B.d.b.b ENSGT00940000159385.a.b.b ENSGT01030000234788 ENSGT00390000017765.a.b ENSGT00940000154361.A.d ENSGT00390000014424 ENSGT00940000155647.bb.f ENSGT00950000182962.a.a.c ENSGT00940000163061.d Common carp reference MODERN SPECIES 15 stip1 (ENSCCRG00000011094) ENSCCRG00000069719 ENSCCRG00000072869 ENSCCRG00000079265 ENSCCRG00000076297 FLRT1 (ENSCCRG00000070750) rps6ka4 (ENSCCRG00000038326) rom1a (ENSCCRG00000038743) ENSCCRG00000066125 cdca5 (ENSCCRG00000041625) ENSCCRG00000041619 zcchc8 (ENSCCRG00000057356) ENSCCRG00000041609 mlxip (ENSCCRG00000063893) sebox (ENSCCRG00000038210) ebf2 (ENSCCRG00000074012) #22 ENSCCRG00000078722 si:dkey-251i10.2 (ENSCCRG00000057026) zbtb20 (ENSCCRG00000080567) ENSCCRG00000071737 b4galt4 (ENSCCRG00000024175) ENSCCRG00000024180 eif4e1b (ENSCCRG00000049401) zgc:175280 (ENSCCRG00000049394) tagln3a (ENSCCRG00000053618) ENSCCRG00000009490 abhd10a (ENSCCRG00000070229) ENSCCRG00000048423 gsx1 (ENSCCRG00000071353) mtif3 (ENSCCRG00000011595) ENSCCRG00000070498 Golden-line barbel MODERN SPECIES 718 mlxip (ENSSGRG00000015186) unga (ENSSGRG00000015187) ebf2 (ENSSGRG00000015188) #22 SLC25A5 (ENSSGRG00000015189) si:dkey-251i10.2 (ENSSGRG00000015193) ENSSGRG00000015195 zbtb20 (ENSSGRG00000015196) ARHGAP31 (ENSSGRG00000015197) CASR (ENSSGRG00000015200) eif4e1b (ENSSGRG00000015206) ENSSGRG00000015208 zgc:175280 (ENSSGRG00000015209) si:ch211-271b14.1 (ENSSGRG00000015210) ENSSGRG00000015211 abhd10a (ENSSGRG00000015212) gsx1 (ENSSGRG00000015213) mtif3 (ENSSGRG00000015215) gtf3aa (ENSSGRG00000015216) Zebrafish MODERN SPECIES 20 MN1 (ENSDARG00000079248) kat5b (ENSDARG00000045951) FERMT3 (ENSDARG00000079267) ENSDARG00000112159 stip1 (ENSDARG00000004906) rps6ka4 (ENSDARG00000044436) rom1a (ENSDARG00000019752) cdca5 (ENSDARG00000044437) CLIP1 (ENSDARG00000078722) zcchc8 (ENSDARG00000034982) si:ch211-110p13.9 (ENSDARG00000093821) rsrc2 (ENSDARG00000042534) mlxip (ENSDARG00000059474) unga (ENSDARG00000042527) sebox (ENSDARG00000042526) ebf2 (ENSDARG00000042525) #22 si:dkey-251i10.1 (ENSDARG00000042521) si:dkey-251i10.2 (ENSDARG00000093957) UTP14C (ENSDARG00000042520) zbtb20 (ENSDARG00000005586) ENSDARG00000093783 ENSDARG00000059472 b4galt4 (ENSDARG00000104042) CASR (ENSDARG00000013649) eif4e1b (ENSDARG00000014565) zgc:175280 (ENSDARG00000099111) si:ch211-271b14.1 (ENSDARG00000101808) tagln3a (ENSDARG00000079805) abhd10a (ENSDARG00000076435) gsx1 (ENSDARG00000035735) mtif3 (ENSDARG00000039649) Clupeiformes ANCESTRAL SPECIES 182 ENSGT00940000156901.B ENSGT00920000149159 ENSGT00950000183083.a.d.b ENSGT00940000158510 ENSGT00390000013287 ENSGT01100000265558 ENSGT00390000002445 ENSGT00940000157707 ENSGT00940000155181.c.a ENSGT00940000161055 ENSGT00940000153434.c.a ENSGT00390000002374 ENSGT00940000169432 ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.u ENSGT00940000156009.A.c ENSGT00390000007992 ENSGT00390000001901 ENSGT00950000183185.c.a.a.bb.a.b ENSGT00940000156855.c ENSGT00940000156009.A.d ENSGT00950000183185.c.a.a.bb.a.a ENSGT00940000156855.d ENSGT00940000154495.b.b.b ENSGT00730000111291 ENSGT00940000166850 ENSGT00940000154191.k.b ENSGT00950000182881.a.b.a.a.b ENSGT00390000013929 Atlantic herring DUPLICATION Atlantic herring MODERN SPECIES 23 ENSCHAG00000019164 pcsk5b (ENSCHAG00000019210) rfk (ENSCHAG00000020946) FOXB2 (ENSCHAG00000020979) ENSCHAG00000021009 vps13a (ENSCHAG00000021136) GNA14 (ENSCHAG00000024349) CEP78 (ENSCHAG00000024356) naa35 (ENSCHAG00000024374) agtpbp1 (ENSCHAG00000024424) NTRK2 (ENSCHAG00000024697) rmi1 (ENSCHAG00000024700) hnrnpk (ENSCHAG00000024703) zgc:136564 (ENSCHAG00000024727) ENSCHAG00000024733 ebf2 (ENSCHAG00000000295) #22 ENSCHAG00000000329 #22 ank1a (ENSCHAG00000001526) ENSCHAG00000007028 ENSCHAG00000007056 spaw (ENSCHAG00000007069) ENSCHAG00000007080 ENSCHAG00000007278 ENSCHAG00000007438 ENSCHAG00000008153 ENSCHAG00000009381 usp39 (ENSCHAG00000009596) si:ch211-283h6.4 (ENSCHAG00000009765) mat2ab (ENSCHAG00000009786) ENSCHAG00000010224 ENSCHAG00000010399 Atlantic herring MODERN SPECIES 23 pcsk5b (ENSCHAG00000019210) rfk (ENSCHAG00000020946) FOXB2 (ENSCHAG00000020979) ENSCHAG00000021009 vps13a (ENSCHAG00000021136) GNA14 (ENSCHAG00000024349) CEP78 (ENSCHAG00000024356) naa35 (ENSCHAG00000024374) agtpbp1 (ENSCHAG00000024424) NTRK2 (ENSCHAG00000024697) rmi1 (ENSCHAG00000024700) hnrnpk (ENSCHAG00000024703) zgc:136564 (ENSCHAG00000024727) ENSCHAG00000024733 ebf2 (ENSCHAG00000000295) #22 ENSCHAG00000000329 #22 ank1a (ENSCHAG00000001526) ENSCHAG00000007028 ENSCHAG00000007056 spaw (ENSCHAG00000007069) ENSCHAG00000007080 ENSCHAG00000007278 ENSCHAG00000007438 ENSCHAG00000008153 ENSCHAG00000009381 usp39 (ENSCHAG00000009596) si:ch211-283h6.4 (ENSCHAG00000009765) mat2ab (ENSCHAG00000009786) ENSCHAG00000010224 ENSCHAG00000010399 selenom (ENSCHAG00000010416) Denticle herring MODERN SPECIES 43 ENSDCDG00000007173 ENSDCDG00000007188 ENSDCDG00000007214 naa35 (ENSDCDG00000007257) agtpbp1 (ENSDCDG00000007553) NTRK2 (ENSDCDG00000010895) rmi1 (ENSDCDG00000010904) zgc:136564 (ENSDCDG00000010916) ebf2 (ENSDCDG00000010933) #22 ENSDCDG00000010997 Euteleosteomorpha ANCESTRAL SPECIES 14 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Protacanthopterygii ANCESTRAL SPECIES 21 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b ENSGT00940000165952 Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 13 ENSGT00940000160182.l ENSGT00940000163293.c.a.d ENSGT00940000155149.kc ENSGT00940000153849.a.a.a.a ENSGT00940000164825.h ENSGT01050000244898.b.a.u ENSGT00530000063869.B.l ENSGT00940000161655 ENSGT00940000156855.c.a ENSGT00950000183185.c.a.a.bb.a.b.j ENSGT00390000001901.a ENSGT00390000007992.g ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b.v #22 ENSGT00950000182859.A.a.a.b.u #22 ENSGT00940000155760.t.a.e ENSGT00940000168975 ENSGT00940000159932.a.e ENSGT00940000163919.a.e ENSGT00530000063370.b.d ENSGT00390000005772.l ENSGT00940000157987.k ENSGT00940000165465.d ENSGT00940000155991.z ENSGT00940000154849.b.i ENSGT00940000154191.k.a.g ENSGT00940000161716.fc.b ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a.h ENSGT00940000165952 Huchen DUPLICATION Huchen DUPLICATION Huchen MODERN SPECIES 2479 ebf2 (ENSHHUG00000051844) #22 Huchen MODERN SPECIES 5352 ENSHHUG00000030693 #22 Huchen MODERN SPECIES 311 ENSHHUG00000030085 kmt5ab (ENSHHUG00000030075) PITPNM2 (ENSHHUG00000029973) arl6ip4 (ENSHHUG00000029968) mthfd2 (ENSHHUG00000029960) mob1a (ENSHHUG00000029935) trafd1 (ENSHHUG00000029928) ENSHHUG00000029921 ENSHHUG00000029897 selenom (ENSHHUG00000029889) INPP5J (ENSHHUG00000029879) mat2ab (ENSHHUG00000029728) si:ch211-283h6.4 (ENSHHUG00000029708) usp39 (ENSHHUG00000029700) sftpbb (ENSHHUG00000029694) ebf2 (ENSHHUG00000029690) #22 Salmoninae_a ANCESTRAL SPECIES 31 ENSGT00940000160182.k ENSGT00940000163293.c.a.c ENSGT00390000012759 ENSGT00940000153849.a.a.a.b ENSGT00390000009670 ENSGT00940000164825.g ENSGT01050000244898.b.a.v ENSGT00530000063869.B.k ENSGT00940000154495.b.b.a.a ENSGT00940000154284.b ENSGT00940000156855.c.b ENSGT00950000183185.c.a.a.bb.a.b.i ENSGT00390000001901.b ENSGT00390000007992.h ENSGT00940000177137 ENSGT00950000182859.A.a.a.b.u #22 ENSGT00940000155760.t.a.f ENSGT00940000159932.a.f ENSGT00940000163919.a.f ENSGT00940000159627 ENSGT00530000063370.b.c ENSGT00390000005772.k ENSGT00940000157987.l ENSGT00940000165465.c ENSGT00940000155991.y ENSGT00940000154849.b.j ENSGT00940000154191.k.a.h ENSGT00390000013711 ENSGT00940000161716.fc.a ENSGT00950000182881.a.b.a.a.a.g ENSGT00570000079101.b Salmo ANCESTRAL SPECIES 19 ENSGT00940000163293.c.a.c ENSGT00390000012759 ENSGT00940000153849.a.a.a.b ENSGT00390000009670.j ENSGT00940000164825.g ENSGT01050000244898.b.a.v ENSGT00530000063869.B.k ENSGT00940000154495.b.a.a.a.b ENSGT00940000154495.b.b.a.a ENSGT00940000154284.b ENSGT00940000156855.c.b ENSGT00950000183185.c.a.a.bb.a.b.i ENSGT00390000001901.b ENSGT00390000007992.h ENSGT00940000177137 ENSGT00950000182859.A.a.a.b.u #22 ENSGT00940000155760.t.a.f ENSGT00940000159932.a.f ENSGT00940000163919.a.f ENSGT00940000159627 ENSGT00530000063370.b.c ENSGT00390000005772.k ENSGT00940000157987.l ENSGT00940000165465.c ENSGT00940000155991.y ENSGT00940000154849.b.j ENSGT00940000154191.k.a.h ENSGT00940000168755 ENSGT00940000161716.fc.a ENSGT00950000182881.a.b.a.a.a.g ENSGT00570000079101.b Atlantic salmon MODERN SPECIES 12 ENSSSAG00000086712 kmt5ab (ENSSSAG00000077894) mtrfr (ENSSSAG00000114699) ENSSSAG00000077962 arl6ip4 (ENSSSAG00000078307) mthfd2 (ENSSSAG00000078312) mob1a (ENSSSAG00000113921) ENSSSAG00000096051 ENSSSAG00000078321 ENSSSAG00000084575 ENSSSAG00000113960 ENSSSAG00000078438 ENSSSAG00000119750 ENSSSAG00000078457 ENSSSAG00000078479 ENSSSAG00000078487 #22 ENSSSAG00000078696 ENSSSAG00000078817 ENSSSAG00000078805 ENSSSAG00000078812 osbp2b (ENSSSAG00000083409) rasl10a (ENSSSAG00000102699) ap1b1 (ENSSSAG00000045173) ENSSSAG00000115278 ENSSSAG00000054753 ENSSSAG00000054745 ENSSSAG00000054756 ENSSSAG00000054796 tctn2 (ENSSSAG00000055994) pik3ip1 (ENSSSAG00000104588) limk2 (ENSSSAG00000056048) River trout MODERN SPECIES 39 hip1rb (ENSSTUG00000015539) RILPL1 (ENSSTUG00000015748) rilpl2 (ENSSTUG00000015779) kmt5ab (ENSSTUG00000015790) mtrfr (ENSSTUG00000015831) PITPNM2 (ENSSTUG00000015984) arl6ip4 (ENSSTUG00000019351) mthfd2 (ENSSTUG00000019389) trafd1 (ENSSTUG00000019462) ENSSTUG00000019549 selenom (ENSSTUG00000019597) INPP5J (ENSSTUG00000019602) mat2ab (ENSSTUG00000019611) si:ch211-283h6.4 (ENSSTUG00000019696) usp39 (ENSSTUG00000019726) ebf2 (ENSSTUG00000020075) #22 ANK1 (ENSSTUG00000020287) ENSSTUG00000021063 ENSSTUG00000021069 dguok (ENSSTUG00000021071) tcn2 (ENSSTUG00000021080) ccdc117 (ENSSTUG00000021099) osbp2b (ENSSTUG00000021137) rasl10a (ENSSTUG00000021203) ap1b1 (ENSSTUG00000021717) ENSSTUG00000028834 ENSSTUG00000028852 ENSSTUG00000028888 ENSSTUG00000028896 ENSSTUG00000028909 atp6v0a2b (ENSSTUG00000028973) Oncorhynchus ANCESTRAL SPECIES 12 ENSGT00940000157897.b ENSGT00940000160182.k ENSGT00940000163293.c.a.c ENSGT00390000012759 ENSGT00940000153849.a.a.a.b ENSGT00390000009670 ENSGT00940000164825.g ENSGT01050000244898.b.a.v ENSGT00530000063869.B.k ENSGT00940000154495.b.b.a.a ENSGT00940000154284.b ENSGT00940000156855.c.b ENSGT00950000183185.c.a.a.bb.a.b.i ENSGT00390000001901.b ENSGT00390000007992.h ENSGT00950000182859.A.a.a.b.u #22 ENSGT00940000155760.t.a.f ENSGT00940000159932.a.f ENSGT00940000163919.a.f ENSGT00940000159627 ENSGT00530000063370.b.c ENSGT00390000005772.k ENSGT00940000157987.l ENSGT00940000165465.c ENSGT00940000155991.y ENSGT00940000154849.b.j ENSGT00940000154191.k.a.h ENSGT00390000013711 ENSGT00940000161716.fc.a ENSGT00950000182881.a.b.a.a.a.g ENSGT00570000079101.b Oncorhynchus_a ANCESTRAL SPECIES 15 ENSGT00940000160182.k ENSGT00940000163293.c.a.c ENSGT00390000012759 ENSGT00940000153849.a.a.a.b ENSGT00390000009670 ENSGT00940000164825.g ENSGT01050000244898.b.a.v ENSGT00530000063869.B.k ENSGT00940000154495.b.a.a.a.b ENSGT00940000154495.b.b.a.a ENSGT00940000154284.b ENSGT00940000156855.c.b ENSGT00950000183185.c.a.a.bb.a.b.i ENSGT00390000001901.b ENSGT00390000007992.h ENSGT00950000182859.A.a.a.b.u #22 ENSGT00940000155760.t.a.f ENSGT00940000159932.a.f ENSGT00940000163919.a.f ENSGT00940000159627 ENSGT00530000063370.b.c ENSGT00390000005772.k ENSGT00940000157987.l ENSGT00940000165465.c ENSGT00940000155991.y ENSGT00940000154849.b.j ENSGT00940000154191.k.a.h ENSGT00390000013711 ENSGT00940000161716.fc.a ENSGT00950000182881.a.b.a.a.a.g ENSGT00570000079101.b Coho salmon MODERN SPECIES 28 HIP1R (ENSOKIG00005004482) RILPL1 (ENSOKIG00005004222) rilpl2 (ENSOKIG00005004209) mtrfr (ENSOKIG00005004198) PITPNM2 (ENSOKIG00005004095) arl6ip4 (ENSOKIG00005004041) mthfd2 (ENSOKIG00005004018) mob1a (ENSOKIG00005003989) trafd1 (ENSOKIG00005003968) ENSOKIG00005003936 selenom (ENSOKIG00005003928) INPP5J (ENSOKIG00005003917) mat2ab (ENSOKIG00005003893) si:ch211-283h6.4 (ENSOKIG00005003885) usp39 (ENSOKIG00005003695) ebf2 (ENSOKIG00005003662) #22 ANK1 (ENSOKIG00005002253) ENSOKIG00005050883 ENSOKIG00005050882 dguok (ENSOKIG00005050881) tcn2 (ENSOKIG00005050880) ccdc117 (ENSOKIG00005050879) osbp2b (ENSOKIG00005050876) rasl10a (ENSOKIG00005050874) ap1b1 (ENSOKIG00005050804) ENSOKIG00005050722 ENSOKIG00005050713 ENSOKIG00005050710 ENSOKIG00005050705 atp6v0a2b (ENSOKIG00005050692) ENSOKIG00005050685 Chinook salmon MODERN SPECIES 3 rilpl2 (ENSOTSG00005028005) kmt5ab (ENSOTSG00005028002) ENSOTSG00005028000 mtrfr (ENSOTSG00005027998) PITPNM2 (ENSOTSG00005027997) arl6ip4 (ENSOTSG00005027994) mthfd2 (ENSOTSG00005027993) mob1a (ENSOTSG00005027990) trafd1 (ENSOTSG00005027988) ENSOTSG00005027987 selenom (ENSOTSG00005027986) INPP5J (ENSOTSG00005027983) mat2ab (ENSOTSG00005027980) si:ch211-283h6.4 (ENSOTSG00005027978) usp39 (ENSOTSG00005027973) ebf2 (ENSOTSG00005027968) #22 ANK1 (ENSOTSG00005027795) ENSOTSG00005027780 spaw (ENSOTSG00005027779) dguok (ENSOTSG00005027774) tcn2 (ENSOTSG00005027773) ccdc117 (ENSOTSG00005027771) osbp2b (ENSOTSG00005027770) cmklr1 (ENSOTSG00005027769) ENSOTSG00005027768 ficd (ENSOTSG00005027766) sart3 (ENSOTSG00005027309) si:ch211-191d15.2 (ENSOTSG00005027277) ENSOTSG00005027275 ENSOTSG00005027274 selplg (ENSOTSG00005027272) Rainbow trout MODERN SPECIES 2 mtrfr (ENSOMYG00000012830) ENSOMYG00000065308 ENSOMYG00000013076 arl6ip4 (ENSOMYG00000015866) mthfd2 (ENSOMYG00000015879) mob1a (ENSOMYG00000015896) ENSOMYG00000015930 ENSOMYG00000015944 selenom (ENSOMYG00000015958) ENSOMYG00000015968 ENSOMYG00000060185 mat2ab (ENSOMYG00000015990) ENSOMYG00000016103 ENSOMYG00000016120 ENSOMYG00000048901 ENSOMYG00000016198 #22 ENSOMYG00000016871 ENSOMYG00000017797 ENSOMYG00000017819 ENSOMYG00000017859 ENSOMYG00000017864 ENSOMYG00000054433 osbp2b (ENSOMYG00000017899) ENSOMYG00000051115 rasl10a (ENSOMYG00000017985) ap1b1 (ENSOMYG00000018182) ENSOMYG00000026411 ENSOMYG00000026421 rhbdd3 (ENSOMYG00000026439) ENSOMYG00000026451 ENSOMYG00000059046 Salmoninae ANCESTRAL SPECIES 13 ENSGT00940000153594.c.e.a.f ENSGT00940000160182.l ENSGT00940000163293.c.a.d ENSGT00940000155149.kc ENSGT00940000153849.a.a.a.a ENSGT00940000164825.h ENSGT01050000244898.b.a.u ENSGT00530000063869.B.l ENSGT00940000161655 ENSGT00940000156855.c.a ENSGT00950000183185.c.a.a.bb.a.b.j ENSGT00390000001901.a ENSGT00390000007992.g ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b.v #22 ENSGT00950000182859.A.a.a.b.u #22 ENSGT00940000155760.t.a.e ENSGT00940000168975 ENSGT00940000159932.a.e ENSGT00940000163919.a.e ENSGT00530000063370.b.d ENSGT00390000005772.l ENSGT00940000157987.k ENSGT00940000165465.d ENSGT00940000155991.z ENSGT00940000154849.b.i ENSGT00940000154191.k.a.g ENSGT00940000161716.fc.b ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a.h Huchen DUPLICATION Huchen MODERN SPECIES 500 CDK2AP1 (ENSHHUG00000052889) PITPNM2 (ENSHHUG00000052884) arl6ip4 (ENSHHUG00000052881) mthfd2 (ENSHHUG00000052879) mob1a (ENSHHUG00000052877) trafd1 (ENSHHUG00000052869) ENSHHUG00000052863 INPP5J (ENSHHUG00000052862) MAT2A (ENSHHUG00000052857) si:ch211-283h6.4 (ENSHHUG00000052855) usp39 (ENSHHUG00000052854) sftpbb (ENSHHUG00000052846) ENSHHUG00000052845 ENSHHUG00000052844 ebf2 (ENSHHUG00000052843) #22 ebf2 (ENSHHUG00000052841) #22 Huchen MODERN SPECIES 500 rilpl2 (ENSHHUG00000052891) CDK2AP1 (ENSHHUG00000052889) PITPNM2 (ENSHHUG00000052884) arl6ip4 (ENSHHUG00000052881) mthfd2 (ENSHHUG00000052879) mob1a (ENSHHUG00000052877) trafd1 (ENSHHUG00000052869) ENSHHUG00000052863 INPP5J (ENSHHUG00000052862) MAT2A (ENSHHUG00000052857) si:ch211-283h6.4 (ENSHHUG00000052855) usp39 (ENSHHUG00000052854) sftpbb (ENSHHUG00000052846) ENSHHUG00000052845 ENSHHUG00000052844 ebf2 (ENSHHUG00000052843) #22 ebf2 (ENSHHUG00000052841) #22 Salmoninae_a ANCESTRAL SPECIES 10 ENSGT00940000153594.c.e.a.f ENSGT00940000160182.l ENSGT00940000163293.c.a.d ENSGT00940000155149.kc ENSGT00940000153849.a.a.a.a ENSGT00940000164825.h ENSGT01050000244898.b.a.u ENSGT00530000063869.B.l ENSGT00940000161655 ENSGT00990000210636 ENSGT00940000156855.c.a ENSGT00950000183185.c.a.a.bb.a.b.j ENSGT00390000001901.a ENSGT00390000007992.g ENSGT00940000164890.b ENSGT00950000182859.A.a.a.b.v #22 ENSGT00940000155760.t.a.e ENSGT00940000168975 ENSGT00940000159932.a.e ENSGT00940000163919.a.e ENSGT00530000063370.b.d ENSGT00390000005772.l ENSGT00940000157987.k ENSGT00940000165465.d ENSGT00940000155991.z ENSGT00940000154849.b.i ENSGT00940000154191.k.a.g ENSGT00940000161716.fc.b ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a.h ENSGT00940000165952 Oncorhynchus ANCESTRAL SPECIES ENSGT00940000160182.l ENSGT00940000163293.c.a.d ENSGT00940000155149.kc ENSGT00940000153849.a.a.a.a ENSGT00940000164825.h ENSGT01050000244898.b.a.u ENSGT00530000063869.B.l ENSGT00940000154495.b.a.a.a.a ENSGT00940000161655 ENSGT00990000210636 ENSGT00940000156855.c.a ENSGT00950000183185.c.a.a.bb.a.b.j ENSGT00390000001901.a ENSGT00390000007992.g ENSGT00940000164890.b ENSGT00950000182859.A.a.a.b.v #22 ENSGT00940000155760.t.a.e ENSGT00940000168975 ENSGT00940000159932.a.e ENSGT00940000163919.a.e ENSGT00530000063370.b.d ENSGT00390000005772.l ENSGT00940000157987.k ENSGT00940000165465.d ENSGT00940000155991.z ENSGT00940000154849.b.i ENSGT00940000154191.k.a.g ENSGT00940000161716.fc.b ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a.h ENSGT00940000165952 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00940000153594.c.e.a.f ENSGT00940000160182.l ENSGT00940000163293.c.a.d ENSGT00940000155149.kc ENSGT00940000153849.a.a.a.a ENSGT00940000164825.h ENSGT01050000244898.b.a.u ENSGT00530000063869.B.l ENSGT00940000154495.b.a.a.a.a ENSGT00990000210636 ENSGT00940000156855.c.a ENSGT00950000183185.c.a.a.bb.a.b.j ENSGT00390000001901.a ENSGT00390000007992.g ENSGT00940000164890.b ENSGT00950000182859.A.a.a.b.v #22 ENSGT00940000155760.t.a.e ENSGT00940000168975 ENSGT00940000159932.a.e ENSGT00940000163919.a.e ENSGT00530000063370.b.d ENSGT00390000005772.l ENSGT00940000157987.k ENSGT00940000165465.d ENSGT00940000155991.z ENSGT00940000155755.b ENSGT00940000154191.k.a.g ENSGT00940000161716.fc.b ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a.h ENSGT00940000165952 Coho salmon MODERN SPECIES 22 rsrc2 (ENSOKIG00005005005) ENSOKIG00005005024 hip1rb (ENSOKIG00005005300) RILPL2 (ENSOKIG00005010237) ENSOKIG00005010257 PITPNM2 (ENSOKIG00005010291) mthfd2 (ENSOKIG00005010457) mob1a (ENSOKIG00005010474) ENSOKIG00005010505 ENSOKIG00005010555 INPP5J (ENSOKIG00005010573) mat2ab (ENSOKIG00005010743) si:ch211-283h6.4 (ENSOKIG00005010769) USP39 (ENSOKIG00005010790) sftpbb (ENSOKIG00005011156) ENSOKIG00005011170 #22 ANK1 (ENSOKIG00005011563) ENSOKIG00005016637 spaw (ENSOKIG00005016644) ENSOKIG00005016674 ENSOKIG00005016716 osbp2b (ENSOKIG00005016727) rasl10a (ENSOKIG00005016785) ap1b1 (ENSOKIG00005016827) ENSOKIG00005017027 ENSOKIG00005017039 ENSOKIG00005017064 DNAH10 (ENSOKIG00005017130) ENSOKIG00005017575 ENSOKIG00005017645 ENSOKIG00005018524 Chinook salmon MODERN SPECIES 28 nkx6.3 (ENSOTSG00005016310) inpp5l (ENSOTSG00005016312) GPAT4 (ENSOTSG00005016316) POLR3D (ENSOTSG00005016526) PHYHIP (ENSOTSG00005016528) gins4 (ENSOTSG00005016529) ENSOTSG00005016530 DBNL (ENSOTSG00005016532) ube2d4 (ENSOTSG00005016539) TCF7L1 (ENSOTSG00005016546) ENSOTSG00005016843 zgc:153044 (ENSOTSG00005016845) MN1 (ENSOTSG00005016846) PITPNB (ENSOTSG00005016847) TTC28 (ENSOTSG00005016848) ebf2 (ENSOTSG00005016849) #22 ANK1 (ENSOTSG00005016869) ENSOTSG00005020307 ENSOTSG00005020308 spaw (ENSOTSG00005020309) tcn2 (ENSOTSG00005020310) ccdc117 (ENSOTSG00005020311) osbp2b (ENSOTSG00005020312) rasl10a (ENSOTSG00005020313) ap1b1 (ENSOTSG00005020318) ENSOTSG00005020446 ENSOTSG00005020451 ENSOTSG00005020454 DNAH10 (ENSOTSG00005020462) atp6v0a2b (ENSOTSG00005020507) ENSOTSG00005025535 Rainbow trout MODERN SPECIES 27 ENSOMYG00000005204 ENSOMYG00000005252 ENSOMYG00000005934 ENSOMYG00000006371 ENSOMYG00000006484 ENSOMYG00000006539 ENSOMYG00000006605 ENSOMYG00000006639 ENSOMYG00000006647 ENSOMYG00000052863 ENSOMYG00000047842 ENSOMYG00000006729 usp39 (ENSOMYG00000006991) si:ch211-283h6.4 (ENSOMYG00000007196) ENSOMYG00000061983 ENSOMYG00000007222 #22 ENSOMYG00000007762 4ebp2 (ENSOMYG00000008455) ENSOMYG00000008475 ENSOMYG00000008513 ENSOMYG00000008546 osbp2b (ENSOMYG00000008766) ENSOMYG00000062703 rasl10a (ENSOMYG00000008830) ap1b1 (ENSOMYG00000009232) ENSOMYG00000010174 ENSOMYG00000010211 ENSOMYG00000010245 ENSOMYG00000010653 ENSOMYG00000011467 ENSOMYG00000011939 Salmo ANCESTRAL SPECIES ENSGT00940000160182.l ENSGT00940000163293.c.a.d ENSGT00940000155149.kc ENSGT00940000153849.a.a.a.a ENSGT00390000009670.i ENSGT00940000164825.h ENSGT01050000244898.b.a.u ENSGT00530000063869.B.l ENSGT00940000161655 ENSGT00990000210636 ENSGT00940000156855.c.a ENSGT00950000183185.c.a.a.bb.a.b.j ENSGT00390000001901.a ENSGT00390000007992.g ENSGT00940000164890.b ENSGT00950000182859.A.a.a.b.v #22 ENSGT00940000155760.t.a.e ENSGT00940000168975 ENSGT00940000159932.a.e ENSGT00940000163919.a.e ENSGT00530000063370.b.d ENSGT00390000005772.l ENSGT00940000157987.k ENSGT00940000165465.d ENSGT00940000155991.z ENSGT00940000154849.b.i ENSGT00940000154191.k.a.g ENSGT00940000161716.fc.b ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a.h ENSGT00940000165952 River trout MODERN SPECIES 19 hip1rb (ENSSTUG00000047044) rilpl2 (ENSSTUG00000046925) ENSSTUG00000046906 ENSSTUG00000046896 PITPNM2 (ENSSTUG00000046564) mthfd2 (ENSSTUG00000046457) mob1a (ENSSTUG00000046433) trafd1 (ENSSTUG00000046414) ENSSTUG00000046323 ENSSTUG00000046314 INPP5J (ENSSTUG00000046214) MAT2A (ENSSTUG00000046181) si:ch211-283h6.4 (ENSSTUG00000046165) usp39 (ENSSTUG00000045908) sftpbb (ENSSTUG00000045875) ebf2 (ENSSTUG00000045822) #22 ENSSTUG00000045812 ENSSTUG00000045804 ANK1 (ENSSTUG00000045262) ENSSTUG00000045230 spaw (ENSSTUG00000045213) tcn2 (ENSSTUG00000045173) ccdc117 (ENSSTUG00000045160) osbp2b (ENSSTUG00000044554) rasl10a (ENSSTUG00000044520) ap1b1 (ENSSTUG00000043694) ENSSTUG00000043641 ENSSTUG00000043624 EWSR1 (ENSSTUG00000043597) ENSSTUG00000043495 DNAH10 (ENSSTUG00000041111) Atlantic salmon MODERN SPECIES 16 ENSSSAG00000075113 ENSSSAG00000073063 ENSSSAG00000085766 ENSSSAG00000113809 arl6ip4 (ENSSSAG00000121888) mthfd2 (ENSSSAG00000072915) mob1a (ENSSSAG00000085563) ENSSSAG00000072880 ENSSSAG00000072863 ENSSSAG00000072852 ENSSSAG00000072813 si:ch211-283h6.4 (ENSSSAG00000078449) ENSSSAG00000072571 sftpbb (ENSSSAG00000072540) ENSSSAG00000112111 ENSSSAG00000072528 #22 ENSSSAG00000047949 ENSSSAG00000047398 ENSSSAG00000099535 tcn2 (ENSSSAG00000047340) ENSSSAG00000047333 osbp2b (ENSSSAG00000047180) rasl10a (ENSSSAG00000093910) ap1b1 (ENSSSAG00000043938) ENSSSAG00000114096 ENSSSAG00000043782 ENSSSAG00000043752 ENSSSAG00000042424 ENSSSAG00000086395 ENSSSAG00000009798 ENSSSAG00000086554 Northern pike MODERN SPECIES 12 CDK2AP1 (ENSELUG00000026401) lg13h12orf65 (ENSELUG00000015178) PITPNM2 (ENSELUG00000015073) arl6ip4 (ENSELUG00000014864) mthfd2 (ENSELUG00000014848) mob1a (ENSELUG00000014804) trafd1 (ENSELUG00000014733) ENSELUG00000014606 selenom (ENSELUG00000026520) INPP5J (ENSELUG00000014418) mat2ab (ENSELUG00000014295) si:ch211-283h6.4 (ENSELUG00000027450) usp39 (ENSELUG00000014265) sftpbb (ENSELUG00000014234) EPX (ENSELUG00000001173) ebf2 (ENSELUG00000014143) #22 ANK1 (ENSELUG00000001055) EIF4EBP1 (ENSELUG00000013938) spaw (ENSELUG00000013899) dguok (ENSELUG00000013881) tcn2 (ENSELUG00000013831) ccdc117 (ENSELUG00000030504) osbp2b (ENSELUG00000013786) rasl10a (ENSELUG00000024787) ap1b1 (ENSELUG00000000507) ENSELUG00000013595 ewsr1b (ENSELUG00000013575) rhbdd3 (ENSELUG00000013543) ENSELUG00000013535 atp6v0a2b (ENSELUG00000013399) ENSELUG00000013371 Acanthomorphata ANCESTRAL SPECIES 48 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00940000168755 ENSGT00390000013711 ENSGT00940000161542 Cod MODERN SPECIES 19 kmt5ab (ENSGMOG00000012138) mtrfr (ENSGMOG00000029974) ENSGMOG00000012144 arl6ip4 (ENSGMOG00000012151) mthfd2 (ENSGMOG00000012153) mob1a (ENSGMOG00000003937) ENSGMOG00000012156 ENSGMOG00000012158 selenom (ENSGMOG00000025188) ENSGMOG00000012173 mat2ab (ENSGMOG00000025352) si:ch211-283h6.4 (ENSGMOG00000017308) ENSGMOG00000012185 sftpbb (ENSGMOG00000012190) ENSGMOG00000012193 ENSGMOG00000012199 #22 ENSGMOG00000012205 ENSGMOG00000012219 ENSGMOG00000033364 ENSGMOG00000012228 ENSGMOG00000012233 ENSGMOG00000012237 osbp2b (ENSGMOG00000012242) rasl10a (ENSGMOG00000012248) ap1b1 (ENSGMOG00000012252) ENSGMOG00000027229 ENSGMOG00000028777 ewsr1b (ENSGMOG00000012263) ENSGMOG00000024604 ENSGMOG00000025569 ENSGMOG00000034351 Euacanthomorphacea ANCESTRAL SPECIES 14 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Percomorphaceae ANCESTRAL SPECIES 2 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Percomorphaceae_B ANCESTRAL SPECIES 7 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Ovalentaria ANCESTRAL SPECIES 4 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 ENSGT00940000154642.d Atherinomorphae ANCESTRAL SPECIES 1 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Cyprinodontiformes ANCESTRAL SPECIES 1 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Aplocheiloidei ANCESTRAL SPECIES 24 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b Mangrove rivulus MODERN SPECIES 26 mtrfr (ENSKMAG00000018733) PITPNM2 (ENSKMAG00000018566) arl6ip4 (ENSKMAG00000018720) mthfd2 (ENSKMAG00000018489) mob1a (ENSKMAG00000018463) trafd1 (ENSKMAG00000018446) ENSKMAG00000018386 selenom (ENSKMAG00000018317) INPP5J (ENSKMAG00000018294) mat2ab (ENSKMAG00000018262) si:ch211-283h6.4 (ENSKMAG00000018244) usp39 (ENSKMAG00000018200) sftpbb (ENSKMAG00000018229) ENSKMAG00000018162 ENSKMAG00000018131 ebf2 (ENSKMAG00000018080) #22 ANK1 (ENSKMAG00000017962) ENSKMAG00000017930 spaw (ENSKMAG00000017922) dguok (ENSKMAG00000017906) tcn2 (ENSKMAG00000017882) osbp2b (ENSKMAG00000017751) rasl10a (ENSKMAG00000017713) ap1b1 (ENSKMAG00000017663) ENSKMAG00000017642 ewsr1b (ENSKMAG00000017617) rhbdd3 (ENSKMAG00000017579) ENSKMAG00000017541 DNAH10 (ENSKMAG00000017349) atp6v0a2b (ENSKMAG00000017289) TCTN2 (ENSKMAG00000017265) Turquoise killifish MODERN SPECIES 1627 kmt5ab (ENSNFUG00015023915) ENSNFUG00015023912 C12ORF65 (ENSNFUG00015023908) PITPNM2 (ENSNFUG00015023755) arl6ip4 (ENSNFUG00015023725) mthfd2 (ENSNFUG00015023681) OLA.12645 (ENSNFUG00015023666) trafd1 (ENSNFUG00015023653) ENSNFUG00015023645 selenom (ENSNFUG00015023644) INPP5J (ENSNFUG00015023621) mat2ab (ENSNFUG00015023611) C5H2ORF68 (ENSNFUG00015023604) usp39 (ENSNFUG00015023541) SFTPB (ENSNFUG00015023532) ebf2 (ENSNFUG00015023496) #22 ENSNFUG00015023486 ANK1 (ENSNFUG00015023113) EIF4EBP1 (ENSNFUG00015023067) spaw (ENSNFUG00015023031) dguok (ENSNFUG00015023027) TCN2L (ENSNFUG00015023018) osbp2b (ENSNFUG00015022862) rasl10a (ENSNFUG00015022841) ap1b1 (ENSNFUG00015020983) GAS2L1 (ENSNFUG00015020936) ewsr1b (ENSNFUG00015020932) rhbdd3 (ENSNFUG00015020931) ENSNFUG00015020928 ATP6V0A2B (ENSNFUG00015019388) ENSNFUG00015019355 Cyprinodontoidei ANCESTRAL SPECIES 1 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991.w.a ENSGT00940000155991.x ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Poeciliinae ANCESTRAL SPECIES 5 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991.w.a ENSGT00940000155991.w.b ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Poecilia ANCESTRAL SPECIES 3 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991.w.a ENSGT00940000155991.w.b ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d NAME_6 ANCESTRAL SPECIES 190 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991.w.a Sailfin molly MODERN SPECIES 1371 ENSPLAG00000015997 ebf2 (ENSPLAG00000000828) #22 ENSPLAG00000016092 ENSPLAG00000016151 Amazon molly MODERN SPECIES 545 mtrfr (ENSPFOG00000011397) PITPNM2 (ENSPFOG00000011044) arl6ip4 (ENSPFOG00000010966) mthfd2 (ENSPFOG00000010913) mob1a (ENSPFOG00000010833) trafd1 (ENSPFOG00000010803) SMTN (ENSPFOG00000010680) selenom (ENSPFOG00000010675) INPP5J (ENSPFOG00000010595) mat2ab (ENSPFOG00000010510) mat2ab (ENSPFOG00000010440) si:ch211-283h6.4 (ENSPFOG00000010409) usp39 (ENSPFOG00000010305) sftpbb (ENSPFOG00000010256) ENSPFOG00000010065 ebf2 (ENSPFOG00000009617) #22 ank1a (ENSPFOG00000008985) ENSPFOG00000008954 spaw (ENSPFOG00000008931) dguok (ENSPFOG00000008851) tcn2 (ENSPFOG00000008793) ccdc117 (ENSPFOG00000008778) osbp2b (ENSPFOG00000008481) rasl10a (ENSPFOG00000008452) ap1b1 (ENSPFOG00000008291) Guppy MODERN SPECIES 461 kmt5ab (ENSPREG00000021252) mtrfr (ENSPREG00000021268) PITPNM2 (ENSPREG00000021286) arl6ip4 (ENSPREG00000021318) mthfd2 (ENSPREG00000021326) mob1a (ENSPREG00000021343) trafd1 (ENSPREG00000021376) ENSPREG00000021395 selenom (ENSPREG00000021417) INPP5J (ENSPREG00000021447) mat2ab (ENSPREG00000021500) si:ch211-283h6.4 (ENSPREG00000021512) usp39 (ENSPREG00000021529) sftpbb (ENSPREG00000021554) EPX (ENSPREG00000021577) ebf2 (ENSPREG00000021597) #22 ANK1 (ENSPREG00000021629) EIF4EBP1 (ENSPREG00000021678) spaw (ENSPREG00000021709) dguok (ENSPREG00000021716) tcn2 (ENSPREG00000021726) osbp2b (ENSPREG00000021738) rasl10a (ENSPREG00000021747) ap1b1 (ENSPREG00000021769) ENSPREG00000021825 ewsr1b (ENSPREG00000021835) rhbdd3 (ENSPREG00000021856) ENSPREG00000021874 ENSPREG00000021892 ENSPREG00000021918 ENSPREG00000021935 Platyfish MODERN SPECIES 3 rilpl2 (ENSXMAG00000021741) kmt5ab (ENSXMAG00000021676) PITPNM2 (ENSXMAG00000017694) arl6ip4 (ENSXMAG00000022410) mthfd2 (ENSXMAG00000017735) mob1a (ENSXMAG00000017741) trafd1 (ENSXMAG00000017752) ENSXMAG00000017754 selenom (ENSXMAG00000017770) ENSXMAG00000017772 mat2ab (ENSXMAG00000017778) si:ch211-283h6.4 (ENSXMAG00000017788) usp39 (ENSXMAG00000017793) sftpbb (ENSXMAG00000027554) ENSXMAG00000017815 ebf2 (ENSXMAG00000017859) #22 ANK1 (ENSXMAG00000017872) ENSXMAG00000017888 spaw (ENSXMAG00000017893) dguok (ENSXMAG00000017897) tcn2 (ENSXMAG00000017900) ccdc117 (ENSXMAG00000017910) osbp2b (ENSXMAG00000017911) rasl10a (ENSXMAG00000017914) ap1b1 (ENSXMAG00000017916) ENSXMAG00000021971 ewsr1b (ENSXMAG00000017933) rhbdd3 (ENSXMAG00000017943) ENSXMAG00000026943 ENSXMAG00000029686 ENSXMAG00000029259 NAME_4 ANCESTRAL SPECIES 33 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991.w.b ENSGT00940000155991.x ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Mummichog MODERN SPECIES 2204 kmt5ab (ENSFHEG00000017573) mtrfr (ENSFHEG00000017567) PITPNM2 (ENSFHEG00000017546) arl6ip4 (ENSFHEG00000017232) mthfd2 (ENSFHEG00000000827) mob1a (ENSFHEG00000017214) trafd1 (ENSFHEG00000017178) SMTN (ENSFHEG00000017167) selenom (ENSFHEG00000017133) INPP5J (ENSFHEG00000017114) mat2ab (ENSFHEG00000016806) si:ch211-283h6.4 (ENSFHEG00000016777) usp39 (ENSFHEG00000016767) sftpbb (ENSFHEG00000016751) ENSFHEG00000016739 ebf2 (ENSFHEG00000000422) #22 ANK1 (ENSFHEG00000016678) EIF4EBP1 (ENSFHEG00000016580) spaw (ENSFHEG00000016568) dguok (ENSFHEG00000016555) tcn2 (ENSFHEG00000016550) ccdc117 (ENSFHEG00000016517) osbp2b (ENSFHEG00000016509) rasl10a (ENSFHEG00000016467) ENSFHEG00000016457 ap1b1 (ENSFHEG00000016434) ENSFHEG00000016322 ENSFHEG00000016305 ewsr1b (ENSFHEG00000016297) rhbdd3 (ENSFHEG00000016271) ENSFHEG00000016233 Sheepshead minnow MODERN SPECIES 290 kmt5ab (ENSCVAG00000023010) mtrfr (ENSCVAG00000023000) PITPNM2 (ENSCVAG00000022982) arl6ip4 (ENSCVAG00000022774) mthfd2 (ENSCVAG00000022769) mob1a (ENSCVAG00000022759) trafd1 (ENSCVAG00000022736) ENSCVAG00000022717 selenom (ENSCVAG00000022673) INPP5J (ENSCVAG00000022654) mat2ab (ENSCVAG00000022635) si:ch211-283h6.4 (ENSCVAG00000022615) usp39 (ENSCVAG00000022610) sftpbb (ENSCVAG00000022600) ENSCVAG00000022596 ebf2 (ENSCVAG00000022588) #22 ANK1 (ENSCVAG00000022552) Oryzias ANCESTRAL SPECIES 7 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b Oryzias_a ANCESTRAL SPECIES 3 ENSGT00940000163293.c.a ENSGT00390000012759.e ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c.v ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b ENSGT00940000165952 Chinese medaka MODERN SPECIES 528 rilpl2 (ENSOSIG00000018632) kmt5ab (ENSOSIG00000018635) mtrfr (ENSOSIG00000018636) PITPNM2 (ENSOSIG00000018642) arl6ip4 (ENSOSIG00000018738) mthfd2 (ENSOSIG00000018742) mob1a (ENSOSIG00000018757) trafd1 (ENSOSIG00000018759) ENSOSIG00000018763 selenom (ENSOSIG00000018764) INPP5J (ENSOSIG00000018775) mat2ab (ENSOSIG00000018872) si:ch211-283h6.4 (ENSOSIG00000018873) usp39 (ENSOSIG00000018886) EPX (ENSOSIG00000018941) ebf2 (ENSOSIG00000019149) #22 ANK1 (ENSOSIG00000019576) ENSOSIG00000022966 spaw (ENSOSIG00000022970) dguok (ENSOSIG00000022980) tcn2 (ENSOSIG00000022988) ccdc117 (ENSOSIG00000022996) osbp2b (ENSOSIG00000023014) rasl10a (ENSOSIG00000023027) ap1b1 (ENSOSIG00000023171) ENSOSIG00000023535 ewsr1b (ENSOSIG00000023536) rhbdd3 (ENSOSIG00000023541) ENSOSIG00000023545 atp6v0a2b (ENSOSIG00000023595) pik3ip1 (ENSOSIG00000023657) Japanese Medaka HdrR MODERN SPECIES 23 PITPNM2 (ENSORLG00000006208) arl6ip4 (ENSORLG00000006213) mthfd2 (ENSORLG00000006229) mob1a (ENSORLG00000006246) trafd1 (ENSORLG00000006256) ENSORLG00000028982 selenom (ENSORLG00000006265) ENSORLG00000006273 mat2ab (ENSORLG00000006298) si:ch211-283h6.4 (ENSORLG00000006309) usp39 (ENSORLG00000006325) sftpbb (ENSORLG00000022185) ENSORLG00000023289 ENSORLG00000027810 ENSORLG00000029520 ebf2 (ENSORLG00000006408) #22 ANK1 (ENSORLG00000006482) ENSORLG00000006498 spaw (ENSORLG00000006553) dguok (ENSORLG00000023221) tcn2 (ENSORLG00000006588) ccdc117 (ENSORLG00000026857) osbp2b (ENSORLG00000006598) rasl10a (ENSORLG00000028722) ap1b1 (ENSORLG00000006687) ENSORLG00000023658 ewsr1b (ENSORLG00000006712) rhbdd3 (ENSORLG00000025522) ENSORLG00000006729 wscd2 (ENSORLG00000006858) cmklr1 (ENSORLG00000006867) Oryzias_b ANCESTRAL SPECIES 6 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b Indian medaka MODERN SPECIES 11 rilpl2 (ENSOMEG00000001656) kmt5ab (ENSOMEG00000001661) mtrfr (ENSOMEG00000001663) PITPNM2 (ENSOMEG00000001701) mthfd2 (ENSOMEG00000001732) mob1a (ENSOMEG00000001736) trafd1 (ENSOMEG00000001740) selenom (ENSOMEG00000001746) ENSOMEG00000001770 ENSOMEG00000001787 mat2ab (ENSOMEG00000001797) si:ch211-283h6.4 (ENSOMEG00000001801) usp39 (ENSOMEG00000001806) sftpbb (ENSOMEG00000001812) ENSOMEG00000000013 ebf2 (ENSOMEG00000001016) #22 ENSOMEG00000001843 ANK1 (ENSOMEG00000001854) ank1a (ENSOMEG00000001864) ENSOMEG00000001869 dguok (ENSOMEG00000000016) tcn2 (ENSOMEG00000001884) ccdc117 (ENSOMEG00000001889) osbp2b (ENSOMEG00000001904) rasl10a (ENSOMEG00000001922) ap1b1 (ENSOMEG00000001965) ENSOMEG00000001985 ewsr1b (ENSOMEG00000002003) rhbdd3 (ENSOMEG00000002011) ENSOMEG00000002047 atp6v0a2b (ENSOMEG00000002077) Javanese ricefish MODERN SPECIES 23 rilpl2 (ENSOJAG00000016181) kmt5ab (ENSOJAG00000016201) mtrfr (ENSOJAG00000016209) PITPNM2 (ENSOJAG00000016241) arl6ip4 (ENSOJAG00000016403) mthfd2 (ENSOJAG00000016415) mob1a (ENSOJAG00000016508) trafd1 (ENSOJAG00000016541) ENSOJAG00000016556 selenom (ENSOJAG00000016591) ENSOJAG00000016638 mat2ab (ENSOJAG00000017153) si:ch211-283h6.4 (ENSOJAG00000017190) usp39 (ENSOJAG00000017206) ENSOJAG00000017366 ebf2 (ENSOJAG00000017606) #22 ANK1 (ENSOJAG00000017803) ENSOJAG00000020677 spaw (ENSOJAG00000020681) dguok (ENSOJAG00000020702) ccdc117 (ENSOJAG00000020777) osbp2b (ENSOJAG00000020782) rasl10a (ENSOJAG00000020797) ap1b1 (ENSOJAG00000020810) ENSOJAG00000020826 ewsr1b (ENSOJAG00000020835) rhbdd3 (ENSOJAG00000020849) ENSOJAG00000020862 atp6v0a2b (ENSOJAG00000020903) ENSOJAG00000021182 pik3ip1 (ENSOJAG00000021208) Ovalentaria_B ANCESTRAL SPECIES 9 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 ENSGT00940000154642.d Cichlidae ANCESTRAL SPECIES 6 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 ENSGT00940000154642.d Pseudocrenilabrinae ANCESTRAL SPECIES 11 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 ENSGT00940000154642.d Pseudocrenilabrinae_A ANCESTRAL SPECIES 8 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 ENSGT00940000154642.d Haplochromini ANCESTRAL SPECIES 4 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a.a.b ENSGT00940000168975 ENSGT00940000159932.a.a.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987.i ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 Haplochromini_A ANCESTRAL SPECIES 4 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a.a.b ENSGT00940000168975 ENSGT00940000159932.a.a.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987.i ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 Haplochromini_B ANCESTRAL SPECIES 2 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a.a.b ENSGT00940000168975 ENSGT00940000159932.a.a.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987.i ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161542 Zebra mbuna MODERN SPECIES 1094 kmt5ab (ENSMZEG00005000983) mtrfr (ENSMZEG00005000938) PITPNM2 (ENSMZEG00005000779) arl6ip4 (ENSMZEG00005000764) mthfd2 (ENSMZEG00005000711) mob1a (ENSMZEG00005000685) trafd1 (ENSMZEG00005000674) ENSMZEG00005000638 selenom (ENSMZEG00005000599) INPP5J (ENSMZEG00005000556) mat2ab (ENSMZEG00005000513) si:ch211-283h6.4 (ENSMZEG00005000502) usp39 (ENSMZEG00005000493) sftpbb (ENSMZEG00005000483) ENSMZEG00005000474 ebf2 (ENSMZEG00005000407) #22 ANK1 (ENSMZEG00005000212) ENSMZEG00005000185 ank1a (ENSMZEG00005000122) ENSMZEG00005017513 spaw (ENSMZEG00005017508) dguok (ENSMZEG00005017502) tcn2 (ENSMZEG00005017492) ccdc117 (ENSMZEG00005017489) osbp2b (ENSMZEG00005017484) rasl10a (ENSMZEG00005017480) ap1b1 (ENSMZEG00005017449) ENSMZEG00005017426 ewsr1b (ENSMZEG00005017417) rhbdd3 (ENSMZEG00005017411) EMID1 (ENSMZEG00005017404) Eastern happy MODERN SPECIES 3 kmt5ab (ENSACLG00000023880) mtrfr (ENSACLG00000023906) PITPNM2 (ENSACLG00000023923) arl6ip4 (ENSACLG00000024054) mthfd2 (ENSACLG00000024079) mob1a (ENSACLG00000024107) trafd1 (ENSACLG00000024115) ENSACLG00000024384 selenom (ENSACLG00000024527) INPP5J (ENSACLG00000024547) mat2ab (ENSACLG00000024577) si:ch211-283h6.4 (ENSACLG00000024610) usp39 (ENSACLG00000024626) sftpbb (ENSACLG00000024643) EPX (ENSACLG00000024666) ebf2 (ENSACLG00000024690) #22 ANK1 (ENSACLG00000024750) ENSACLG00000024871 ENSACLG00000024877 ENSACLG00000025025 spaw (ENSACLG00000025031) dguok (ENSACLG00000025037) tcn2 (ENSACLG00000025066) ccdc117 (ENSACLG00000025077) osbp2b (ENSACLG00000025120) rasl10a (ENSACLG00000025302) ap1b1 (ENSACLG00000025324) ENSACLG00000025467 ewsr1b (ENSACLG00000025479) rhbdd3 (ENSACLG00000025489) ENSACLG00000025512 P. nyererei MODERN SPECIES 301 kmt5ab (ENSPNYG00000014428) mtrfr (ENSPNYG00000014456) PITPNM2 (ENSPNYG00000014500) arl6ip4 (ENSPNYG00000014579) mthfd2 (ENSPNYG00000014596) mob1a (ENSPNYG00000014622) trafd1 (ENSPNYG00000014646) ENSPNYG00000014671 selenom (ENSPNYG00000014691) INPP5J (ENSPNYG00000014708) mat2ab (ENSPNYG00000014731) si:ch211-283h6.4 (ENSPNYG00000014754) usp39 (ENSPNYG00000014771) sftpbb (ENSPNYG00000014796) EPX (ENSPNYG00000014825) ebf2 (ENSPNYG00000014874) #22 ANK1 (ENSPNYG00000014921) ENSPNYG00000015028 ank1a (ENSPNYG00000015041) ENSPNYG00000015057 spaw (ENSPNYG00000015072) dguok (ENSPNYG00000015086) tcn2 (ENSPNYG00000015100) ccdc117 (ENSPNYG00000015132) osbp2b (ENSPNYG00000015141) rasl10a (ENSPNYG00000015164) ap1b1 (ENSPNYG00000015181) ENSPNYG00000015234 ewsr1b (ENSPNYG00000015252) rhbdd3 (ENSPNYG00000015271) DNAH10 (ENSPNYG00000015288) Burton s mouthbrooder MODERN SPECIES 283 PITPNM2 (ENSHBUG00000007246) arl6ip4 (ENSHBUG00000007166) mthfd2 (ENSHBUG00000007159) mob1a (ENSHBUG00000007149) trafd1 (ENSHBUG00000007131) ENSHBUG00000007110 selenom (ENSHBUG00000007053) ENSHBUG00000007040 ENSHBUG00000007022 mat2ab (ENSHBUG00000006986) si:ch211-283h6.4 (ENSHBUG00000006968) usp39 (ENSHBUG00000006958) sftpbb (ENSHBUG00000006951) ENSHBUG00000006940 EPX (ENSHBUG00000006922) ebf2 (ENSHBUG00000006879) #22 ANK1 (ENSHBUG00000006749) ENSHBUG00000006107 spaw (ENSHBUG00000006084) dguok (ENSHBUG00000006069) tcn2 (ENSHBUG00000006050) ccdc117 (ENSHBUG00000006040) osbp2b (ENSHBUG00000006005) rasl10a (ENSHBUG00000005695) ap1b1 (ENSHBUG00000005689) ENSHBUG00000005651 ewsr1b (ENSHBUG00000005646) rhbdd3 (ENSHBUG00000005613) ENSHBUG00000005632 DNAH10 (ENSHBUG00000005590) atp6v0a2b (ENSHBUG00000005437) Lyretail cichlid MODERN SPECIES 296 ENSNBRG00000010447 MMP19 (ENSNBRG00000010412) suox (ENSNBRG00000010397) mcrs1 (ENSNBRG00000010328) cyp27b1 (ENSNBRG00000010272) mettl1 (ENSNBRG00000010232) cdk4 (ENSNBRG00000010216) ENSNBRG00000010131 PIP4K2C (ENSNBRG00000010097) ENSNBRG00000010061 SPRYD3 (ENSNBRG00000010027) ENSNBRG00000010004 ENSNBRG00000009897 SMUG1 (ENSNBRG00000009836) EPX (ENSNBRG00000009796) ebf2 (ENSNBRG00000009759) #22 ANK1 (ENSNBRG00000009668) ENSNBRG00000009635 ank1a (ENSNBRG00000009617) ENSNBRG00000009600 dguok (ENSNBRG00000009586) tcn2 (ENSNBRG00000009574) ccdc117 (ENSNBRG00000009563) osbp2b (ENSNBRG00000009531) rasl10a (ENSNBRG00000009522) ap1b1 (ENSNBRG00000009458) ENSNBRG00000009427 ewsr1b (ENSNBRG00000009400) ENSNBRG00000009378 DNAH10 (ENSNBRG00000009180) ENSNBRG00000009117 Nile tilapia MODERN SPECIES 3 mtrfr (ENSONIG00000013298) PITPNM2 (ENSONIG00000013299) mthfd2 (ENSONIG00000013309) mob1a (ENSONIG00000013313) trafd1 (ENSONIG00000013316) ENSONIG00000039913 ENSONIG00000027517 selenom (ENSONIG00000035340) ENSONIG00000013324 mat2ab (ENSONIG00000003555) si:ch211-283h6.4 (ENSONIG00000013329) usp39 (ENSONIG00000013330) ENSONIG00000041154 ENSONIG00000034091 EPX (ENSONIG00000013339) ebf2 (ENSONIG00000013342) #22 ANK1 (ENSONIG00000013350) ENSONIG00000032534 spaw (ENSONIG00000013352) dguok (ENSONIG00000013353) tcn2 (ENSONIG00000013356) ccdc117 (ENSONIG00000030854) osbp2b (ENSONIG00000013361) rasl10a (ENSONIG00000013366) ap1b1 (ENSONIG00000013367) ENSONIG00000031046 ewsr1b (ENSONIG00000013378) ENSONIG00000038334 ENSONIG00000034830 EMID1 (ENSONIG00000013382) DNAH10 (ENSONIG00000013386) Midas cichlid MODERN SPECIES 355 ENSACIG00000010354 ENSACIG00000010366 ebf2 (ENSACIG00000010391) #22 ANK1 (ENSACIG00000010428) ENSACIG00000010539 ank1a (ENSACIG00000010550) EIF4EBP1 (ENSACIG00000010565) spaw (ENSACIG00000010618) dguok (ENSACIG00000010634) tcn2 (ENSACIG00000010678) osbp2b (ENSACIG00000010707) rasl10a (ENSACIG00000010764) ap1b1 (ENSACIG00000010776) ENSACIG00000010816 ewsr1b (ENSACIG00000010829) rhbdd3 (ENSACIG00000010864) ENSACIG00000010882 ENSACIG00000010924 Pomacentridae ANCESTRAL SPECIES ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00730000112955 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Pomacentridae_A ANCESTRAL SPECIES 1 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Amphiprion ANCESTRAL SPECIES 10 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00940000164472.a.b.d ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Orange clownfish MODERN SPECIES 19 mtrfr (ENSAPEG00000024618) PITPNM2 (ENSAPEG00000024567) arl6ip4 (ENSAPEG00000024554) mthfd2 (ENSAPEG00000024550) mob1a (ENSAPEG00000024543) trafd1 (ENSAPEG00000024533) ENSAPEG00000024518 selenom (ENSAPEG00000024508) ENSAPEG00000024505 ENSAPEG00000024494 mat2ab (ENSAPEG00000024485) si:ch211-283h6.4 (ENSAPEG00000024480) usp39 (ENSAPEG00000024467) sftpbb (ENSAPEG00000024459) ENSAPEG00000024413 ebf2 (ENSAPEG00000024396) #22 ANK1 (ENSAPEG00000024367) ENSAPEG00000024358 spaw (ENSAPEG00000024350) dguok (ENSAPEG00000024342) tcn2 (ENSAPEG00000024337) ccdc117 (ENSAPEG00000024333) osbp2b (ENSAPEG00000024266) rasl10a (ENSAPEG00000024233) ap1b1 (ENSAPEG00000024167) ENSAPEG00000024158 ewsr1b (ENSAPEG00000024145) ENSAPEG00000024067 rhbdd3 (ENSAPEG00000024044) ENSAPEG00000024035 DNAH10 (ENSAPEG00000023968) Clown anemonefish MODERN SPECIES 319 ENSAOCG00000023451 ENSAOCG00000023483 mat2ab (ENSAOCG00000023509) si:ch211-283h6.4 (ENSAOCG00000023527) usp39 (ENSAOCG00000023553) sftpbb (ENSAOCG00000023565) ENSAOCG00000023662 ebf2 (ENSAOCG00000001716) #22 ANK1 (ENSAOCG00000023728) ENSAOCG00000023739 spaw (ENSAOCG00000023745) dguok (ENSAOCG00000023754) Spiny chromis MODERN SPECIES 1207 ebf2 (ENSAPOG00000009197) #22 ENSAPOG00000009106 ANK1 (ENSAPOG00000009002) ank1a (ENSAPOG00000008804) ENSAPOG00000008772 Bicolor damselfish MODERN SPECIES 2502 ENSSPAG00000015144 ebf2 (ENSSPAG00000015160) #22 ENSSPAG00000015249 ANK1 (ENSSPAG00000015341) ank1a (ENSSPAG00000015506) ENSSPAG00000015519 Percomorphaceae_C ANCESTRAL SPECIES 7 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d Percomorphaceae_D ANCESTRAL SPECIES 7 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00940000168755 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Anabantaria ANCESTRAL SPECIES 4 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b Anabantoidei ANCESTRAL SPECIES 4 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b Climbing perch MODERN SPECIES 22 kmt5ab (ENSATEG00000011675) mtrfr (ENSATEG00000011661) ENSATEG00000011506 arl6ip4 (ENSATEG00000027706) mthfd2 (ENSATEG00000011443) mob1a (ENSATEG00000011438) ENSATEG00000011426 SMTN (ENSATEG00000011362) selenom (ENSATEG00000011331) INPP5J (ENSATEG00000011290) mat2ab (ENSATEG00000011242) si:ch211-283h6.4 (ENSATEG00000011234) ENSATEG00000011205 sftpbb (ENSATEG00000027890) ENSATEG00000011186 ENSATEG00000011129 #22 ENSATEG00000011002 ENSATEG00000010916 ENSATEG00000010895 ENSATEG00000010885 ENSATEG00000010863 ENSATEG00000010839 osbp2b (ENSATEG00000010818) rasl10a (ENSATEG00000010796) ap1b1 (ENSATEG00000010714) ENSATEG00000010680 ewsr1b (ENSATEG00000010664) rhbdd3 (ENSATEG00000010654) ENSATEG00000026245 DNAH10 (ENSATEG00000029498) ENSATEG00000010175 Siamese fighting fish MODERN SPECIES 20 mob1a (ENSBSLG00000013917) trafd1 (ENSBSLG00000013897) ENSBSLG00000013849 selenom (ENSBSLG00000013840) INPP5J (ENSBSLG00000013669) mat2ab (ENSBSLG00000013576) si:ch211-283h6.4 (ENSBSLG00000013558) usp39 (ENSBSLG00000013016) sftpbb (ENSBSLG00000013013) ENSBSLG00000013001 ENSBSLG00000012997 ENSBSLG00000012947 ENSBSLG00000012813 ENSBSLG00000012795 ENSBSLG00000012719 ebf2 (ENSBSLG00000012704) #22 ANK1 (ENSBSLG00000008127) ENSBSLG00000007285 spaw (ENSBSLG00000007182) tcn2 (ENSBSLG00000007151) ccdc117 (ENSBSLG00000007142) osbp2b (ENSBSLG00000007051) rasl10a (ENSBSLG00000007033) ap1b1 (ENSBSLG00000006965) GAS2L1 (ENSBSLG00000006679) ewsr1b (ENSBSLG00000006515) rhbdd3 (ENSBSLG00000006469) ENSBSLG00000006369 atp6v0a2b (ENSBSLG00000004674) ENSBSLG00000004574 ENSBSLG00000004570 Zig-zag eel MODERN SPECIES 23 kmt5ab (ENSMAMG00000017368) C12orf65 (ENSMAMG00000024345) ENSMAMG00000017220 arl6ip4 (ENSMAMG00000017190) mthfd2 (ENSMAMG00000017168) mob1a (ENSMAMG00000017147) ENSMAMG00000017130 ENSMAMG00000017096 selenom (ENSMAMG00000025931) ENSMAMG00000016963 mat2ab (ENSMAMG00000016940) ENSMAMG00000016935 ENSMAMG00000027322 ENSMAMG00000024531 ENSMAMG00000016862 ENSMAMG00000016827 #22 ENSMAMG00000016735 ENSMAMG00000028711 ENSMAMG00000016707 ENSMAMG00000016698 ENSMAMG00000016694 ENSMAMG00000016676 osbp2b (ENSMAMG00000016657) ap1b1 (ENSMAMG00000016557) ENSMAMG00000016533 ewsr1b (ENSMAMG00000016510) rhbdd3 (ENSMAMG00000016504) ENSMAMG00000016493 DNAH10 (ENSMAMG00000016378) ENSMAMG00000016359 TCTN2 (ENSMAMG00000016337) Carangaria ANCESTRAL SPECIES 9 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00940000168755 ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b Carangaria_A ANCESTRAL SPECIES 6 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Seriola ANCESTRAL SPECIES 35 ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000154495.b.b.a ENSGT00940000154284.b ENSGT00940000177369 ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c.l ENSGT00940000156009.A.c.k ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a Yellowtail amberjack MODERN SPECIES 2853 mtrfr (ENSSLDG00000017638) PITPNM2 (ENSSLDG00000017588) arl6ip4 (ENSSLDG00000017507) mthfd2 (ENSSLDG00000017340) mob1a (ENSSLDG00000017235) trafd1 (ENSSLDG00000017208) ENSSLDG00000017156 selenom (ENSSLDG00000017101) INPP5J (ENSSLDG00000017063) mat2ab (ENSSLDG00000017044) si:ch211-283h6.4 (ENSSLDG00000017029) usp39 (ENSSLDG00000016937) ENSSLDG00000016877 ENSSLDG00000016860 EPX (ENSSLDG00000016838) ebf2 (ENSSLDG00000016812) #22 ANK1 (ENSSLDG00000016701) ENSSLDG00000016596 Greater amberjack MODERN SPECIES 98 mthfd2 (ENSSDUG00000020221) mob1a (ENSSDUG00000020206) trafd1 (ENSSDUG00000020193) ENSSDUG00000020068 selenom (ENSSDUG00000020048) ENSSDUG00000020041 ENSSDUG00000020027 mat2ab (ENSSDUG00000020008) si:ch211-283h6.4 (ENSSDUG00000019998) usp39 (ENSSDUG00000019931) sftpbb (ENSSDUG00000019891) ENSSDUG00000019856 ENSSDUG00000019782 ENSSDUG00000019767 EPX (ENSSDUG00000017578) ebf2 (ENSSDUG00000017394) #22 ANK1 (ENSSDUG00000017309) ENSSDUG00000017281 Barramundi perch MODERN SPECIES 95 kmt5ab (ENSLCAG00010028279) mtrfr (ENSLCAG00010028278) PITPNM2 (ENSLCAG00010028277) arl6ip4 (ENSLCAG00010028276) mthfd2 (ENSLCAG00010028275) mob1a (ENSLCAG00010028274) trafd1 (ENSLCAG00010028273) SMTN (ENSLCAG00010028272) selenom (ENSLCAG00010028271) INPP5J (ENSLCAG00010028270) mat2ab (ENSLCAG00010028269) si:ch211-283h6.4 (ENSLCAG00010028268) usp39 (ENSLCAG00010028267) sftpbb (ENSLCAG00010028266) ENSLCAG00010028265 ebf2 (ENSLCAG00010028264) #22 ANK1 (ENSLCAG00010028262) EIF4EBP1 (ENSLCAG00010028261) spaw (ENSLCAG00010028260) ENSLCAG00010028259 tcn2 (ENSLCAG00010028258) ccdc117 (ENSLCAG00010028257) osbp2b (ENSLCAG00010028256) ap1b1 (ENSLCAG00010028255) ENSLCAG00010028254 ewsr1b (ENSLCAG00010028253) rhbdd3 (ENSLCAG00010028252) ENSLCAG00010028251 DNAH10 (ENSLCAG00010028250) atp6v0a2b (ENSLCAG00010028249) TCTN2 (ENSLCAG00010028248) Pleuronectoidei ANCESTRAL SPECIES 8 ENSGT00940000160182 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000168975 ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00940000168755 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Tongue sole DUPLICATION Tongue sole MODERN SPECIES 31 ENSCSEG00000012719 ebf2 (ENSCSEG00000013272) #22 ANK1 (ENSCSEG00000013307) ENSCSEG00000013357 ENSCSEG00000013360 dguok (ENSCSEG00000013362) ENSCSEG00000013374 ENSCSEG00000013382 tcn2 (ENSCSEG00000013399) osbp2b (ENSCSEG00000013407) ENSCSEG00000013436 rasl10a (ENSCSEG00000013444) ap1b1 (ENSCSEG00000013466) ENSCSEG00000013603 Tongue sole MODERN SPECIES 397 ERLIN2 (ENSCSEG00000014144) znf703 (ENSCSEG00000014156) ENSCSEG00000014161 ENSCSEG00000014166 ENSCSEG00000014190 smad2 (ENSCSEG00000014228) ENSCSEG00000014409 ENSCSEG00000014410 smarcad1a (ENSCSEG00000014419) ENSCSEG00000014459 grid2 (ENSCSEG00000014466) ENSCSEG00000014483 ENSCSEG00000014489 ENSCSEG00000014501 ENSCSEG00000014508 ebf2 (ENSCSEG00000014512) #22 ANK1 (ENSCSEG00000014527) ENSCSEG00000014589 ENSCSEG00000014602 spaw (ENSCSEG00000014635) ENSCSEG00000014643 ENSCSEG00000014652 ENSCSEG00000014659 rasl10a (ENSCSEG00000015572) ap1b1 (ENSCSEG00000015590) ENSCSEG00000015966 ENSCSEG00000015972 atp6v0a2b (ENSCSEG00000015984) ENSCSEG00000016016 ENSCSEG00000016020 ENSCSEG00000016024 Turbot MODERN SPECIES 21 kmt5ab (ENSSMAG00000016787) mtrfr (ENSSMAG00000033634) ENSSMAG00000016662 arl6ip4 (ENSSMAG00000016606) mthfd2 (ENSSMAG00000016570) mob1a (ENSSMAG00000016560) ENSSMAG00000016533 ENSSMAG00000016422 ENSSMAG00000016360 ENSSMAG00000016324 si:ch211-283h6.4 (ENSSMAG00000022989) ENSSMAG00000016281 sftpbb (ENSSMAG00000016234) ENSSMAG00000016145 ENSSMAG00000016108 ENSSMAG00000016051 #22 ENSSMAG00000015797 ENSSMAG00000015759 ENSSMAG00000015754 ENSSMAG00000015729 ENSSMAG00000015710 osbp2b (ENSSMAG00000015603) rasl10a (ENSSMAG00000036011) ap1b1 (ENSSMAG00000015486) ENSSMAG00000015463 ewsr1b (ENSSMAG00000015449) ENSSMAG00000015440 ENSSMAG00000015394 ENSSMAG00000015195 ENSSMAG00000015116 ENSSMAG00000026057 Eupercaria ANCESTRAL SPECIES 5 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Tetraodontidae ANCESTRAL SPECIES 12 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Fugu MODERN SPECIES 13 kmt5ab (ENSTRUG00000029390) mtrfr (ENSTRUG00000027946) PITPNM2 (ENSTRUG00000009641) arl6ip4 (ENSTRUG00000010106) mthfd2 (ENSTRUG00000010166) mob1a (ENSTRUG00000010297) trafd1 (ENSTRUG00000021902) ENSTRUG00000010473 selenom (ENSTRUG00000011053) INPP5J (ENSTRUG00000011059) mat2ab (ENSTRUG00000021803) si:ch211-283h6.4 (ENSTRUG00000011291) usp39 (ENSTRUG00000011317) sftpbb (ENSTRUG00000023363) ENSTRUG00000011376 ebf2 (ENSTRUG00000011528) #22 ANK1 (ENSTRUG00000011938) ENSTRUG00000024442 spaw (ENSTRUG00000012437) dguok (ENSTRUG00000012499) tcn2 (ENSTRUG00000012642) ccdc117 (ENSTRUG00000019657) osbp2b (ENSTRUG00000012868) rasl10a (ENSTRUG00000029269) ENSTRUG00000024711 ap1b1 (ENSTRUG00000013017) ENSTRUG00000013171 ewsr1b (ENSTRUG00000021926) rhbdd3 (ENSTRUG00000020217) ENSTRUG00000032865 atp6v0a2b (ENSTRUG00000013490) Tetraodon MODERN SPECIES 3 rilpl2 (ENSTNIG00000015830) kmt5ab (ENSTNIG00000015831) mtrfr (ENSTNIG00000015832) PITPNM2 (ENSTNIG00000015833) arl6ip4 (ENSTNIG00000015834) mthfd2 (ENSTNIG00000015835) mob1a (ENSTNIG00000015836) ENSTNIG00000015837 selenom (ENSTNIG00000015838) INPP5J (ENSTNIG00000015839) mat2ab (ENSTNIG00000015840) si:ch211-283h6.4 (ENSTNIG00000015841) usp39 (ENSTNIG00000015842) ENSTNIG00000015843 ENSTNIG00000015844 ebf2 (ENSTNIG00000015845) #22 ANK1 (ENSTNIG00000015846) spaw (ENSTNIG00000015847) dguok (ENSTNIG00000015848) tcn2 (ENSTNIG00000015849) osbp2b (ENSTNIG00000015850) rasl10a (ENSTNIG00000015851) ap1b1 (ENSTNIG00000015852) GAS2L1 (ENSTNIG00000015853) ewsr1b (ENSTNIG00000015854) ENSTNIG00000015855 ENSTNIG00000015856 DNAH10 (ENSTNIG00000015857) atp6v0a2b (ENSTNIG00000015858) TCTN2 (ENSTNIG00000015859) ENSTNIG00000015860 Eupecaria_A ANCESTRAL SPECIES 6 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Ballan wrasse MODERN SPECIES 370 kmt5ab (ENSLBEG00000014052) ENSLBEG00000014033 PITPNM2 (ENSLBEG00000013976) mthfd2 (ENSLBEG00000013927) mob1a (ENSLBEG00000013834) ENSLBEG00000013786 ENSLBEG00000013750 selenom (ENSLBEG00000013729) INPP5J (ENSLBEG00000013694) mat2ab (ENSLBEG00000013663) si:ch211-283h6.4 (ENSLBEG00000013646) usp39 (ENSLBEG00000013591) sftpbb (ENSLBEG00000013559) ENSLBEG00000013385 EPX (ENSLBEG00000013277) ebf2 (ENSLBEG00000013215) #22 Eupecaria_B ANCESTRAL SPECIES 6 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Perciformes ANCESTRAL SPECIES 6 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Perciformes_a ANCESTRAL SPECIES 4 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Pike perch MODERN SPECIES 23 PITPNM2 (ENSSLUG00000008829) arl6ip4 (ENSSLUG00000008792) mthfd2 (ENSSLUG00000008763) mob1a (ENSSLUG00000008719) trafd1 (ENSSLUG00000008709) ENSSLUG00000008686 selenom (ENSSLUG00000008673) INPP5J (ENSSLUG00000008211) mat2ab (ENSSLUG00000008142) si:ch211-283h6.4 (ENSSLUG00000008133) usp39 (ENSSLUG00000008012) ENSSLUG00000007991 ENSSLUG00000007985 EPX (ENSSLUG00000007929) ENSSLUG00000007778 ebf2 (ENSSLUG00000007728) #22 ANK1 (ENSSLUG00000007180) ENSSLUG00000007082 spaw (ENSSLUG00000007069) dguok (ENSSLUG00000007057) tcn2 (ENSSLUG00000007022) ccdc117 (ENSSLUG00000007005) osbp2b (ENSSLUG00000006855) rasl10a (ENSSLUG00000006831) ap1b1 (ENSSLUG00000001883) ENSSLUG00000001336 ewsr1b (ENSSLUG00000001330) ENSSLUG00000001328 ENSSLUG00000001320 DNAH10 (ENSSLUG00000001270) atp6v0a2b (ENSSLUG00000001202) Channel bull blenny MODERN SPECIES 23 kmt5ab (ENSCGOG00000017747) mtrfr (ENSCGOG00000017744) PITPNM2 (ENSCGOG00000017006) arl6ip4 (ENSCGOG00000016967) mthfd2 (ENSCGOG00000016920) mob1a (ENSCGOG00000016865) trafd1 (ENSCGOG00000016854) SMTN (ENSCGOG00000016833) selenom (ENSCGOG00000016832) INPP5J (ENSCGOG00000016704) mat2ab (ENSCGOG00000016307) si:ch211-283h6.4 (ENSCGOG00000016295) usp39 (ENSCGOG00000016003) sftpbb (ENSCGOG00000015999) ENSCGOG00000015995 ebf2 (ENSCGOG00000015989) #22 ANK1 (ENSCGOG00000009984) ENSCGOG00000009821 spaw (ENSCGOG00000009777) dguok (ENSCGOG00000009766) tcn2 (ENSCGOG00000009755) ccdc117 (ENSCGOG00000009751) osbp2b (ENSCGOG00000009686) rasl10a (ENSCGOG00000009683) ap1b1 (ENSCGOG00000008937) ENSCGOG00000008892 ENSCGOG00000008885 ewsr1b (ENSCGOG00000008862) rhbdd3 (ENSCGOG00000008856) ENSCGOG00000008843 ENSCGOG00000008833 Cottioidei ANCESTRAL SPECIES 11 ENSGT00940000163293.c.a ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00940000168755 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a ENSGT00570000079101.b Lumpfish MODERN SPECIES 24 trafd1 (ENSCLMG00005009672) SMTN (ENSCLMG00005009674) selenom (ENSCLMG00005009680) ENSCLMG00005009681 INPP5J (ENSCLMG00005009682) mat2ab (ENSCLMG00005009683) si:ch211-283h6.4 (ENSCLMG00005009690) usp39 (ENSCLMG00005009698) sftpbb (ENSCLMG00005009739) ENSCLMG00005009741 ENSCLMG00005009742 EPX (ENSCLMG00005009771) ENSCLMG00005009785 ENSCLMG00005009807 EPX (ENSCLMG00005009914) ebf2 (ENSCLMG00005009920) #22 ANK1 (ENSCLMG00005009962) ENSCLMG00005016789 spaw (ENSCLMG00005016791) ENSCLMG00005016792 tcn2 (ENSCLMG00005016793) ccdc117 (ENSCLMG00005016796) osbp2b (ENSCLMG00005016803) rasl10a (ENSCLMG00005016836) ap1b1 (ENSCLMG00005016862) ENSCLMG00005019738 ewsr1b (ENSCLMG00005019739) rhbdd3 (ENSCLMG00005019740) ENSCLMG00005019741 ENSCLMG00005019743 ENSCLMG00005019744 Stickleback MODERN SPECIES 12 kmt5ab (ENSGACG00000008249) mtrfr (ENSGACG00000008255) PITPNM2 (ENSGACG00000008257) arl6ip4 (ENSGACG00000008271) mthfd2 (ENSGACG00000008274) mob1a (ENSGACG00000008308) ENSGACG00000008336 ENSGACG00000008350 selenom (ENSGACG00000008365) INPP5J (ENSGACG00000008367) mat2ab (ENSGACG00000008374) si:ch211-283h6.4 (ENSGACG00000008412) usp39 (ENSGACG00000008416) sftpbb (ENSGACG00000008426) EPX (ENSGACG00000008429) ebf2 (ENSGACG00000008451) #22 ANK1 (ENSGACG00000008464) spaw (ENSGACG00000008499) dguok (ENSGACG00000008502) tcn2 (ENSGACG00000008530) ccdc117 (ENSGACG00000008555) osbp2b (ENSGACG00000008560) rasl10a (ENSGACG00000008570) ap1b1 (ENSGACG00000008581) GAS2L1 (ENSGACG00000008598) ewsr1b (ENSGACG00000008603) ENSGACG00000008626 ENSGACG00000008631 DNAH10 (ENSGACG00000008633) atp6v0a2b (ENSGACG00000008660) ENSGACG00000008693 Eupecaria_C ANCESTRAL SPECIES 3 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a Gilthead seabream MODERN SPECIES 19 kmt5ab (ENSSAUG00010008196) mtrfr (ENSSAUG00010008197) PITPNM2 (ENSSAUG00010008205) arl6ip4 (ENSSAUG00010008232) mthfd2 (ENSSAUG00010008234) mob1a (ENSSAUG00010008237) trafd1 (ENSSAUG00010008244) ENSSAUG00010008250 selenom (ENSSAUG00010008256) INPP5J (ENSSAUG00010008260) mat2ab (ENSSAUG00010008281) si:ch211-283h6.4 (ENSSAUG00010008346) usp39 (ENSSAUG00010008348) ENSSAUG00010008358 ENSSAUG00010008365 ebf2 (ENSSAUG00010009055) #22 ANK1 (ENSSAUG00010009127) ENSSAUG00010009205 spaw (ENSSAUG00010009208) dguok (ENSSAUG00010009210) tcn2 (ENSSAUG00010009213) ccdc117 (ENSSAUG00010009216) osbp2b (ENSSAUG00010009219) rasl10a (ENSSAUG00010009234) ap1b1 (ENSSAUG00010009237) ENSSAUG00010009244 ewsr1b (ENSSAUG00010009245) rhbdd3 (ENSSAUG00010009247) ENSSAUG00010009249 atp6v0a2b (ENSSAUG00010009329) ENSSAUG00010015357 Eupercaria_incertae_sedis ANCESTRAL SPECIES 9 ENSGT00390000012759 ENSGT00940000153849.a.a.a ENSGT00390000009670 ENSGT00940000164825 ENSGT01050000244898.b.a ENSGT00530000063869.B ENSGT00940000154495.b.a.a.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a.bb.a.b ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 ENSGT00940000155760.t.a ENSGT00940000159932.a ENSGT00940000163919.a ENSGT00940000159627 ENSGT00530000063370.b ENSGT00390000005772 ENSGT00940000157987 ENSGT00940000165465 ENSGT00940000155991 ENSGT00940000154849.b ENSGT00940000154191.k.a ENSGT00390000013711 ENSGT00940000161716 ENSGT00940000154642.d ENSGT00950000182881.a.b.a.a.a European seabass MODERN SPECIES 13 rilpl2 (ENSDLAG00005026936) kmt5ab (ENSDLAG00005027975) ENSDLAG00005001515 arl6ip4 (ENSDLAG00005027500) mthfd2 (ENSDLAG00005001301) mob1a (ENSDLAG00005033706) ENSDLAG00005001224 SMTN (ENSDLAG00005028720) selenom (ENSDLAG00005025123) INPP5J (ENSDLAG00005025038) mat2ab (ENSDLAG00005025002) si:ch211-283h6.4 (ENSDLAG00005024997) ENSDLAG00005024953 sftpbb (ENSDLAG00005024943) ENSDLAG00005024839 ENSDLAG00005024785 #22 ENSDLAG00005024539 ENSDLAG00005028009 ENSDLAG00005024507 ENSDLAG00005024487 ENSDLAG00005024480 ENSDLAG00005031037 osbp2b (ENSDLAG00005024477) rasl10a (ENSDLAG00005024476) ap1b1 (ENSDLAG00005023469) ENSDLAG00005029080 ewsr1b (ENSDLAG00005023400) rhbdd3 (ENSDLAG00005023399) ENSDLAG00005023395 DNAH10 (ENSDLAG00005023275) ENSDLAG00005022874 Large yellow croaker MODERN SPECIES 2 rilpl2 (ENSLCRG00005001304) kmt5ab (ENSLCRG00005001301) mtrfr (ENSLCRG00005001300) PITPNM2 (ENSLCRG00005000718) arl6ip4 (ENSLCRG00005000633) mthfd2 (ENSLCRG00005000624) mob1a (ENSLCRG00005000611) trafd1 (ENSLCRG00005000605) ENSLCRG00005000584 ENSLCRG00005000581 mat2ab (ENSLCRG00005000579) si:ch211-283h6.4 (ENSLCRG00005000578) usp39 (ENSLCRG00005000540) sftpbb (ENSLCRG00005000537) ENSLCRG00005000248 ebf2 (ENSLCRG00005000105) #22 ANK1 (ENSLCRG00005019273) ENSLCRG00005019268 spaw (ENSLCRG00005019267) dguok (ENSLCRG00005019266) tcn2 (ENSLCRG00005019265) ccdc117 (ENSLCRG00005019264) osbp2b (ENSLCRG00005019263) rasl10a (ENSLCRG00005019262) ap1b1 (ENSLCRG00005019099) ENSLCRG00005019095 ewsr1b (ENSLCRG00005019092) ENSLCRG00005019089 rhbdd3 (ENSLCRG00005019087) ENSLCRG00005019086 atp6v0a2b (ENSLCRG00005017450) Tiger tail seahorse MODERN SPECIES 89 med22 (ENSHCOG00000011324) zgc:103692 (ENSHCOG00000011312) nfu1 (ENSHCOG00000011290) gfpt1 (ENSHCOG00000011267) ANTXR1 (ENSHCOG00000011213) mob1a (ENSHCOG00000011169) trafd1 (ENSHCOG00000011162) ENSHCOG00000011145 selenom (ENSHCOG00000011125) INPP5J (ENSHCOG00000000342) mat2ab (ENSHCOG00000011076) si:ch211-283h6.4 (ENSHCOG00000011042) usp39 (ENSHCOG00000011034) sftpbb (ENSHCOG00000011021) ENSHCOG00000011008 ebf2 (ENSHCOG00000011002) #22 ANK1 (ENSHCOG00000010970) ENSHCOG00000010936 ank1a (ENSHCOG00000010924) ENSHCOG00000010913 spaw (ENSHCOG00000010909) dguok (ENSHCOG00000010891) tcn2 (ENSHCOG00000010885) ccdc117 (ENSHCOG00000010870) osbp2b (ENSHCOG00000010856) rasl10a (ENSHCOG00000010738) ap1b1 (ENSHCOG00000000717) GAS2L1 (ENSHCOG00000010610) ewsr1b (ENSHCOG00000010568) rhbdd3 (ENSHCOG00000010554) ENSHCOG00000010538 Pinecone sodierfish MODERN SPECIES 23 kmt5ab (ENSMMDG00005018431) mtrfr (ENSMMDG00005018425) PITPNM2 (ENSMMDG00005017796) arl6ip4 (ENSMMDG00005017666) mthfd2 (ENSMMDG00005017633) mob1a (ENSMMDG00005017567) trafd1 (ENSMMDG00005017508) ENSMMDG00005017475 selenom (ENSMMDG00005017463) ENSMMDG00005017446 mat2ab (ENSMMDG00005017383) si:ch211-283h6.4 (ENSMMDG00005017361) usp39 (ENSMMDG00005017241) sftpbb (ENSMMDG00005017119) ENSMMDG00005016571 ebf2 (ENSMMDG00005016341) #22 ANK1 (ENSMMDG00005014687) ank1a (ENSMMDG00005014268) ENSMMDG00005014235 spaw (ENSMMDG00005014169) dguok (ENSMMDG00005014110) tcn2 (ENSMMDG00005014074) ccdc117 (ENSMMDG00005014065) osbp2b (ENSMMDG00005013520) rasl10a (ENSMMDG00005013324) ap1b1 (ENSMMDG00005004197) GAS2L1 (ENSMMDG00005001149) ewsr1b (ENSMMDG00005001067) rhbdd3 (ENSMMDG00005001008) ENSMMDG00005021470 ENSMMDG00005021468 Osteoglossiformes ANCESTRAL SPECIES 47 ENSGT00940000155991 ENSGT00940000165465 ENSGT00940000157987 ENSGT00390000005772 ENSGT00530000063370.b ENSGT00530000063869.B ENSGT00940000154495.b.b.a ENSGT00940000161655 ENSGT00940000154284.b ENSGT00940000156855.c ENSGT00950000183185.c.a.a ENSGT00390000001901 ENSGT00390000007992 ENSGT00940000164890.b ENSGT00940000156009.A.c ENSGT00950000182859.A.a.a.b #22 Asian bonytongue MODERN SPECIES 10 GAS2L1 (ENSSFOG00015027655) ap1b1 (ENSSFOG00015001894) rasl10a (ENSSFOG00015001821) osbp2b (ENSSFOG00015025852) ccdc117 (ENSSFOG00015027233) tcn2 (ENSSFOG00015001813) trafd1 (ENSSFOG00015001804) SMTN (ENSSFOG00015001788) selenom (ENSSFOG00015028744) INPP5J (ENSSFOG00015001597) mat2ab (ENSSFOG00015027261) si:ch211-283h6.4 (ENSSFOG00015001551) usp39 (ENSSFOG00015001542) ENSSFOG00015032713 ENSSFOG00015001529 ebf2 (ENSSFOG00015001451) #22 zgc:162200 (ENSSFOG00015001424) nt5dc2 (ENSSFOG00015001364) ENSSFOG00015001344 tbc1d25 (ENSSFOG00015028889) ENSSFOG00015001226 tox2 (ENSSFOG00015001168) ENSSFOG00015001026 PREX1 (ENSSFOG00015000864) kcnq2a (ENSSFOG00015028801) CHRNA4 (ENSSFOG00015000746) zgpat (ENSSFOG00015000739) ENSSFOG00015000734 rtel1 (ENSSFOG00015000577) STMN3 (ENSSFOG00015000551) ##14 pdyn (ENSSFOG00015031763) P. kingsleyae MODERN SPECIES 523 ENSPKIG00000017315 trafd1 (ENSPKIG00000017365) ENSPKIG00000017489 selenom (ENSPKIG00000017624) INPP5J (ENSPKIG00000017651) mat2ab (ENSPKIG00000017674) si:ch211-283h6.4 (ENSPKIG00000017698) usp39 (ENSPKIG00000017728) sftpbb (ENSPKIG00000017785) ENSPKIG00000017822 ebf2 (ENSPKIG00000017875) #22 Spotted gar MODERN SPECIES 647 ykt6 (ENSLOCG00000015179) NPC1L1 (ENSLOCG00000015181) ddx56 (ENSLOCG00000015185) tmed4 (ENSLOCG00000015187) nt5c2l1 (ENSLOCG00000015189) slc20a1b (ENSLOCG00000015194) snrnp200 (ENSLOCG00000015198) ciao1 (ENSLOCG00000015205) tmem127 (ENSLOCG00000015207) STARD7 (ENSLOCG00000015208) GGCX (ENSLOCG00000015209) mat2ab (ENSLOCG00000015213) usp39 (ENSLOCG00000015215) ENSLOCG00000015217 mpx (ENSLOCG00000015220) ebf2 (ENSLOCG00000015225) #22 ank1a (ENSLOCG00000015227) CNNM3 (ENSLOCG00000015245) CNNM4 (ENSLOCG00000015250) lman2la (ENSLOCG00000015252) wbp1 (ENSLOCG00000015254) arl3b (ENSLOCG00000015256) PAX8 (ENSLOCG00000015261) ENSLOCG00000015264 ENSLOCG00000015267 ENSLOCG00000015271 purbb (ENSLOCG00000015273) h2az2b (ENSLOCG00000015274) polm (ENSLOCG00000015276) gnsb (ENSLOCG00000015279) ZMIZ2 (ENSLOCG00000015282) Reedfish MODERN SPECIES ash2l (ENSECRG00000000323) star (ENSECRG00000000322) ENSECRG00000000321 lsm1 (ENSECRG00000000320) bag4 (ENSECRG00000000319) DUSP26 (ENSECRG00000000318) ENSECRG00000000317 RNF122 (ENSECRG00000000316) ENSECRG00000000314 mat2ab (ENSECRG00000000313) si:ch211-283h6.4 (ENSECRG00000000312) usp39 (ENSECRG00000000311) ENSECRG00000000310 mpx (ENSECRG00000000309) mpx (ENSECRG00000000308) ebf2 (ENSECRG00000000307) #22 ank1a (ENSECRG00000000306) POLR3D (ENSECRG00000000305) ENSECRG00000000304 ppp1r3c2b (ENSECRG00000000303) gins4 (ENSECRG00000000302) gatd3l (ENSECRG00000000301) ENSECRG00000000300 chmp7 (ENSECRG00000000299) lgi3 (ENSECRG00000000298) fgfr1b (ENSECRG00000000297) ankrd39 (ENSECRG00000000296) ENSECRG00000000295 kctd9b (ENSECRG00000000294) #24 actr1b (ENSECRG00000000293) marchf5l (ENSECRG00000000292) Euteleostomi ANCESTRAL SPECIES 247 ENSGT00390000012630.A ENSGT00940000159140.c.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT01030000234518.A.a.a ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 Actinopterygii ANCESTRAL SPECIES 103 ENSGT00940000156866 ENSGT00390000014165 ENSGT00940000160854 ENSGT00390000011206.b ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538 ENSGT00940000156641 ENSGT00390000007501 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 Reedfish MODERN SPECIES 13 sfxn5b (ENSECRG00000004187) ENSECRG00000004223 cct7 (ENSECRG00000004242) ENSECRG00000004260 ENSECRG00000004271 ENSECRG00000004299 ENSECRG00000004322 ENSECRG00000004346 ENSECRG00000004356 dok1b (ENSECRG00000004363) ENSECRG00000004376 ENSECRG00000004385 ENSECRG00000004394 ENSECRG00000004397 ENSECRG00000004403 ENSECRG00000004457 ##22 ENSECRG00000004794 ENSECRG00000006073 ENSECRG00000006081 ENSECRG00000006089 ENSECRG00000006094 ENSECRG00000006102 ENSECRG00000006126 ENSECRG00000006138 ENSECRG00000006146 dctn1a (ENSECRG00000006170) PCED1A (ENSECRG00000006240) ENSECRG00000006421 ENSECRG00000007706 ENSECRG00000007725 ENSECRG00000007741 Neopterygii ANCESTRAL SPECIES 24 ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538.g ENSGT00940000156641 ENSGT00390000007501 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000007125.b Spotted gar MODERN SPECIES 670 ENSLOCG00000001380 dok1b (ENSLOCG00000001428) m1ap (ENSLOCG00000001444) SEMA4F (ENSLOCG00000001476) ENSLOCG00000001508 ENSLOCG00000001521 ENSLOCG00000001537 SPEF1 (ENSLOCG00000001547) ENSLOCG00000001581 ADISSP (ENSLOCG00000001593) vax2 (ENSLOCG00000001602) ENSLOCG00000001621 tex261 (ENSLOCG00000001643) ENSLOCG00000001657 ENSLOCG00000001669 ENSLOCG00000001693 ##22 CPXM1 (ENSLOCG00000001718) ENSLOCG00000017470 dctn1a (ENSLOCG00000001745) fam113 (ENSLOCG00000001799) ADAM33 (ENSLOCG00000001814) ENSLOCG00000001832 ENSLOCG00000001848 ENSLOCG00000001861 nanos1 (ENSLOCG00000018172) lbx2 (ENSLOCG00000001890) pcgf1 (ENSLOCG00000001907) fgf24 (ENSLOCG00000001921) npm1b (ENSLOCG00000001942) tlx2 (ENSLOCG00000001968) kazald2 (ENSLOCG00000001985) Osteoglossocephalai ANCESTRAL SPECIES 681 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B Clupeocephala ANCESTRAL SPECIES 163 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT01030000234799 ENSGT00950000183018.b ENSGT00940000154658.b.i.a ENSGT00940000157174.d ENSGT00940000177365 ENSGT00940000159937 ENSGT00390000013344 Euteleosteomorpha ANCESTRAL SPECIES 125 ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT01030000234799 ENSGT00950000183018.b ENSGT00940000154658.b.i.a ENSGT00940000157174.d ENSGT00940000177365 ENSGT00940000159937 ENSGT00390000013344 Acanthomorphata ANCESTRAL SPECIES 568 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 Euacanthomorphacea ANCESTRAL SPECIES 325 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 Pinecone sodierfish MODERN SPECIES 1 ENSMMDG00005016442 PCDH1 (ENSMMDG00005016445) ENSMMDG00005016446 ENSMMDG00005016448 ENSMMDG00005016450 ENSMMDG00005016454 PCDH12 (ENSMMDG00005016456) ENSMMDG00005016459 LTC4S (ENSMMDG00005016463) MAML1 (ENSMMDG00005016468) canx (ENSMMDG00005016543) mgat4b (ENSMMDG00005018678) DGKQ (ENSMMDG00005018688) NFKB1 (ENSMMDG00005018695) ENSMMDG00005018699 EBF4 (ENSMMDG00005018746) ##22 ELP1 (ENSMMDG00005018839) TBC1D2 (ENSMMDG00005019658) SLC44A1 (ENSMMDG00005019662) ABCA1 (ENSMMDG00005019834) nipsnap3a (ENSMMDG00005023991) noa1 (ENSMMDG00005023992) rest (ENSMMDG00005023996) b4galt1l (ENSMMDG00005023999) exosc3 (ENSMMDG00005024003) ENSMMDG00005024007 ENSMMDG00005024009 ENSMMDG00005024012 neurog1 (ENSMMDG00005024013) ENSMMDG00005024015 ARAP3 (ENSMMDG00005024029) Percomorphaceae ANCESTRAL SPECIES 78 ENSGT00390000017284.b ENSGT00940000153322.B.d.a ENSGT00940000169511 ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 Tiger tail seahorse MODERN SPECIES 506 GAL3ST3 (ENSHCOG00000012476) ccs (ENSHCOG00000012499) rbm14b (ENSHCOG00000012571) actn3a (ENSHCOG00000012609) ENSHCOG00000012642 wdr55 (ENSHCOG00000012660) ENSHCOG00000012670 ENSHCOG00000012673 ENSHCOG00000012693 aimp1b (ENSHCOG00000000370) sgms2b (ENSHCOG00000012755) ENSHCOG00000012781 ENSHCOG00000012806 ENSHCOG00000012821 KCNJ10 (ENSHCOG00000012863) EBF4 (ENSHCOG00000013199) ##22 ENSHCOG00000013223 ENSHCOG00000000581 exosc3 (ENSHCOG00000013389) F2RL3 (ENSHCOG00000013396) rnf130 (ENSHCOG00000013401) ENSHCOG00000013405 ENSHCOG00000000845 ENSHCOG00000013454 sqstm1 (ENSHCOG00000013492) rnf4 (ENSHCOG00000013524) selenot2 (ENSHCOG00000013542) COX18 (ENSHCOG00000013555) igfbp7 (ENSHCOG00000013565) polr2b (ENSHCOG00000013588) ABCA1 (ENSHCOG00000017057) Percomorphaceae_B ANCESTRAL SPECIES 14 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 Ovalentaria ANCESTRAL SPECIES 15 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 Atherinomorphae DUPLICATION Atherinomorphae ANCESTRAL SPECIES 9 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a.b ##22 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 ENSGT00940000158869 Oryzias ANCESTRAL SPECIES 164 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a.a ##22 Oryzias_a ANCESTRAL SPECIES 222 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a.a ##22 Chinese medaka MODERN SPECIES 5312 mgat4b (ENSOSIG00000008613) canx (ENSOSIG00000008878) ENSOSIG00000010002 ENSOSIG00000010019 ##22 ENSOSIG00000010020 ##22 ENSOSIG00000010021 Cyprinodontiformes ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.a ##22 Cyprinodontoidei ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.a ##22 Poeciliinae ANCESTRAL SPECIES 11 ENSGT00950000182859.A.a.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000170262 ENSGT00940000172107 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A Poecilia ANCESTRAL SPECIES 43 ENSGT00940000172107 ENSGT00940000159937 ENSGT00950000182859.A.a.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000170262 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 Guppy MODERN SPECIES 440 ENSPREG00000011992 ENSPREG00000011913 ##22 ENSPREG00000011875 ENSPREG00000011852 ENSPREG00000011838 neurog1 (ENSPREG00000011823) ENSPREG00000011807 SLC44A1 (ENSPREG00000011738) ABCA1 (ENSPREG00000011618) nipsnap3a (ENSPREG00000011587) ENSPREG00000011577 noa1 (ENSPREG00000011564) ENSPREG00000011527 ENSPREG00000011509 tgfbi (ENSPREG00000011486) exosc3 (ENSPREG00000011472) b4galt1l (ENSPREG00000011461) NAME_6 ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.a ##22 Sailfin molly MODERN SPECIES 2164 ENSPLAG00000012969 ##22 Amazon molly MODERN SPECIES 1034 ENSPFOG00000023105 ##22 Platyfish MODERN SPECIES 15 ENSXMAG00000029916 ENSXMAG00000010668 ##22 ENSXMAG00000022697 ENSXMAG00000022920 ENSXMAG00000014107 ENSXMAG00000014101 neurog1 (ENSXMAG00000028096) ENSXMAG00000025715 TBC1D2 (ENSXMAG00000026272) SLC44A1 (ENSXMAG00000014677) ENSXMAG00000026678 ENSXMAG00000022260 ABCA1 (ENSXMAG00000014714) nipsnap3a (ENSXMAG00000028197) noa1 (ENSXMAG00000014913) ENSXMAG00000027965 ENSXMAG00000014930 Aplocheiloidei ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.a ##22 Mangrove rivulus MODERN SPECIES 471 ENSKMAG00000001820 ##22 ENSKMAG00000001871 SYDE1 (ENSKMAG00000001904) ENSKMAG00000001931 dpysl4 (ENSKMAG00000001989) ##16 ENSKMAG00000002084 Atherinomorphae ANCESTRAL SPECIES 9 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a.b ##22 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a Oryzias ANCESTRAL SPECIES 17 ENSGT00510000048167.b.b ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a.b ##22 Oryzias_b ANCESTRAL SPECIES 47 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a.b ##22 Indian medaka MODERN SPECIES 37 ENSOMEG00000022135 tmem216 (ENSOMEG00000022141) tmed9 (ENSOMEG00000022161) b4galt7 (ENSOMEG00000022170) ENSOMEG00000022187 ENSOMEG00000022205 ENSOMEG00000022223 LTC4S (ENSOMEG00000022231) ENSOMEG00000022312 canx (ENSOMEG00000022389) mgat4b (ENSOMEG00000022443) DGKQ (ENSOMEG00000022467) NFKB1 (ENSOMEG00000022508) ENSOMEG00000022533 ENSOMEG00000022560 ENSOMEG00000022594 ##22 Javanese ricefish MODERN SPECIES 1 slc25a48 (ENSOJAG00000001835) ENSOJAG00000001821 cplx2 (ENSOJAG00000001813) ENSOJAG00000001798 ENSOJAG00000001769 gm2a (ENSOJAG00000001748) PCDH12 (ENSOJAG00000001726) PCDH1 (ENSOJAG00000001705) ENSOJAG00000001686 LTC4S (ENSOJAG00000001666) ENSOJAG00000001607 ENSOJAG00000001577 mgat4b (ENSOJAG00000022654) NFKB1 (ENSOJAG00000022598) ENSOJAG00000022588 ENSOJAG00000022489 ##22 ENSOJAG00000022465 ENSOJAG00000022445 ENSOJAG00000022438 tmed9 (ENSOJAG00000022428) tmem216 (ENSOJAG00000022424) ENSOJAG00000022412 ENSOJAG00000022404 Oryzias_a ANCESTRAL SPECIES 65 ENSGT00510000048167.b.b ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a.b ##22 Chinese medaka MODERN SPECIES 5312 mgat4b (ENSOSIG00000008613) canx (ENSOSIG00000008878) ENSOSIG00000010002 ENSOSIG00000010019 ##22 ENSOSIG00000010020 ##22 ENSOSIG00000010021 Japanese Medaka HdrR MODERN SPECIES 1 b4galt7 (ENSORLG00000011570) ENSORLG00000025070 ENSORLG00000023242 ENSORLG00000025235 LTC4S (ENSORLG00000023609) MAML1 (ENSORLG00000024588) ENSORLG00000027469 canx (ENSORLG00000018595) mgat4b (ENSORLG00000018573) DGKQ (ENSORLG00000019496) NFKB1 (ENSORLG00000030524) ENSORLG00000021832 ENSORLG00000026271 ENSORLG00000025092 ENSORLG00000028427 ENSORLG00000020414 ##22 ENSORLG00000027596 ENSORLG00000022088 ENSORLG00000028816 Cyprinodontiformes ANCESTRAL SPECIES 8 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a.b ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 Cyprinodontoidei ANCESTRAL SPECIES 23 ENSGT00950000182859.A.a.a.a.b ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 Poeciliinae ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.b ##22 Poecilia ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.b ##22 NAME_6 ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.b ##22 Amazon molly MODERN SPECIES 1494 ENSPFOG00000021873 ##22 NAME_4 ANCESTRAL SPECIES 120 ENSGT00950000182859.A.a.a.a.b ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 Sheepshead minnow MODERN SPECIES 171 glra1 (ENSCVAG00000006211) g3bp1 (ENSCVAG00000006194) sparc (ENSCVAG00000006179) atox1 (ENSCVAG00000006172) SLC36A1 (ENSCVAG00000000178) mtnr1al (ENSCVAG00000006149) FAT2 (ENSCVAG00000005460) lman2 (ENSCVAG00000005444) HTR4 (ENSCVAG00000005422) SLC26A2 (ENSCVAG00000005401) EBF4 (ENSCVAG00000005393) ##22 ENSCVAG00000005349 ENSCVAG00000005337 ENSCVAG00000005325 neurog1 (ENSCVAG00000005319) ENSCVAG00000005311 SLC44A1 (ENSCVAG00000005295) ABCA1 (ENSCVAG00000005271) nipsnap3a (ENSCVAG00000005118) noa1 (ENSCVAG00000005104) ENSCVAG00000005090 ENSCVAG00000005072 ENSCVAG00000005014 tgfbi (ENSCVAG00000004988) exosc3 (ENSCVAG00000004942) b4galt1l (ENSCVAG00000004938) Mummichog MODERN SPECIES 582 ENSFHEG00000013598 ##22 Aplocheiloidei ANCESTRAL SPECIES 13 ENSGT00940000158129 ENSGT00510000048167.b.b ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000158625 ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a.b ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d Mangrove rivulus MODERN SPECIES 416 ENSKMAG00000007481 ##22 ENSKMAG00000007525 ENSKMAG00000007594 ENSKMAG00000007646 nmnat2 (ENSKMAG00000007723) Turquoise killifish MODERN SPECIES 1610 tmem216 (ENSNFUG00015000692) TMED9 (ENSNFUG00015000701) B4GALT7 (ENSNFUG00015000722) ENSNFUG00015000729 ENSNFUG00015000732 EMX3 (ENSNFUG00015000734) ENSNFUG00015000735 CABZ01005777.1 (ENSNFUG00015000737) LTC4S (ENSNFUG00015000740) ENSNFUG00015000742 ENSNFUG00015000745 CANX (ENSNFUG00015000772) mgat4b (ENSNFUG00015000853) NFKB1 (ENSNFUG00015000976) ENSNFUG00015001455 ENSNFUG00015001519 ##22 ENSNFUG00015001638 MATR3L1.1 (ENSNFUG00015001659) PAIP2 (ENSNFUG00015001676) NEUROG1 (ENSNFUG00015001682) ENSNFUG00015001686 TBC1D2 (ENSNFUG00015001697) SLC44A1 (ENSNFUG00015001707) ABCA1B (ENSNFUG00015001724) NIPSNAP3 (ENSNFUG00015001752) NOA1 (ENSNFUG00015001762) ARAP3 (ENSNFUG00015001792) cebp1 (ENSNFUG00015001871) OLA.7742 (ENSNFUG00015001876) TGFBI (ENSNFUG00015001906) b4galt1l (ENSNFUG00015001947) Ovalentaria_B ANCESTRAL SPECIES 13 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 Cichlidae ANCESTRAL SPECIES 8 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00390000013344 Pseudocrenilabrinae ANCESTRAL SPECIES 27 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00390000013344 Pseudocrenilabrinae_A ANCESTRAL SPECIES 31 ENSGT00940000181346 ENSGT00690000103768 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00390000013344 Haplochromini ANCESTRAL SPECIES 25 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000179353 ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00390000013344 Haplochromini_A ANCESTRAL SPECIES 28 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000179353 ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000177365 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00390000013344 Haplochromini_B ANCESTRAL SPECIES 45 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000179353 ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937.e ENSGT00940000177365.a ENSGT00940000159937.f ENSGT00940000177365.b.b.a ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A Eastern happy MODERN SPECIES 11 ENSACLG00000016967 PCDH1 (ENSACLG00000016940) ENSACLG00000016851 tmem216 (ENSACLG00000016820) tmed9 (ENSACLG00000016806) b4galt7 (ENSACLG00000016773) emx3 (ENSACLG00000016742) ENSACLG00000016715 LTC4S (ENSACLG00000016707) MAML1 (ENSACLG00000016672) canx (ENSACLG00000016610) mgat4b (ENSACLG00000016482) DGKQ (ENSACLG00000016414) NFKB1 (ENSACLG00000016324) ENSACLG00000016262 ENSACLG00000016208 ##22 ENSACLG00000016125 ENSACLG00000015903 ENSACLG00000015884 ENSACLG00000015874 neurog1 (ENSACLG00000015850) TBC1D2 (ENSACLG00000015741) ENSACLG00000015721 ENSACLG00000015708 ENSACLG00000015682 ENSACLG00000015662 ENSACLG00000015640 SLC44A1 (ENSACLG00000015591) ABCA1 (ENSACLG00000015417) nipsnap3a (ENSACLG00000015397) noa1 (ENSACLG00000015378) Zebra mbuna MODERN SPECIES 1102 ENSMZEG00005004284 PCDH1 (ENSMZEG00005004220) ENSMZEG00005004199 tmem216 (ENSMZEG00005004180) TMED9 (ENSMZEG00005004161) b4galt7 (ENSMZEG00005004139) emx3 (ENSMZEG00005004124) ENSMZEG00005004113 LTC4S (ENSMZEG00005004105) MAML1 (ENSMZEG00005004071) canx (ENSMZEG00005004048) mgat4b (ENSMZEG00005003994) DGKQ (ENSMZEG00005003967) NFKB1 (ENSMZEG00005003891) ENSMZEG00005003871 ENSMZEG00005003833 ##22 ENSMZEG00005003813 ENSMZEG00005003796 ENSMZEG00005003673 ENSMZEG00005003652 neurog1 (ENSMZEG00005003639) ENSMZEG00005003635 ENSMZEG00005003619 ENSMZEG00005003579 ENSMZEG00005003572 PCGF3 (ENSMZEG00005003535) SLC49A3 (ENSMZEG00005003526) NCBP1 (ENSMZEG00005003469) TSTD2 (ENSMZEG00005003462) hopx (ENSMZEG00005003454) arl9 (ENSMZEG00005003443) P. nyererei MODERN SPECIES 374 PCDH1 (ENSPNYG00000016296) ENSPNYG00000016274 ENSPNYG00000016260 tmem216 (ENSPNYG00000016231) tmed9 (ENSPNYG00000016215) b4galt7 (ENSPNYG00000016193) emx3 (ENSPNYG00000016181) ENSPNYG00000016169 LTC4S (ENSPNYG00000016155) MAML1 (ENSPNYG00000016125) canx (ENSPNYG00000016110) mgat4b (ENSPNYG00000016071) DGKQ (ENSPNYG00000016046) NFKB1 (ENSPNYG00000015980) ENSPNYG00000015942 ENSPNYG00000015899 ##22 ENSPNYG00000015889 ENSPNYG00000015855 ENSPNYG00000015843 ENSPNYG00000015792 neurog1 (ENSPNYG00000015779) ENSPNYG00000015766 ENSPNYG00000015756 Burton s mouthbrooder MODERN SPECIES 486 tmem216 (ENSHBUG00000004417) tmed9 (ENSHBUG00000004407) b4galt7 (ENSHBUG00000004386) emx3 (ENSHBUG00000004351) ENSHBUG00000004337 LTC4S (ENSHBUG00000004326) MAML1 (ENSHBUG00000004311) canx (ENSHBUG00000004272) mgat4b (ENSHBUG00000004245) DGKQ (ENSHBUG00000004203) NFKB1 (ENSHBUG00000004157) ENSHBUG00000004096 ENSHBUG00000004084 ##22 ENSHBUG00000004043 ENSHBUG00000000095 ENSHBUG00000003991 neurog1 (ENSHBUG00000003982) ENSHBUG00000003972 Lyretail cichlid MODERN SPECIES 341 ENSNBRG00000013827 PCDH1 (ENSNBRG00000013804) ENSNBRG00000013792 tmem216 (ENSNBRG00000013774) tmed9 (ENSNBRG00000013768) b4galt7 (ENSNBRG00000013752) ENSNBRG00000013698 ENSNBRG00000013670 LTC4S (ENSNBRG00000013645) MAML1 (ENSNBRG00000013633) canx (ENSNBRG00000013618) mgat4b (ENSNBRG00000013586) DGKQ (ENSNBRG00000013510) NFKB1 (ENSNBRG00000013462) ENSNBRG00000013447 ENSNBRG00000013414 ##22 ENSNBRG00000013399 ENSNBRG00000013335 ENSNBRG00000013323 neurog1 (ENSNBRG00000013315) TBC1D2 (ENSNBRG00000013288) SLC44A1 (ENSNBRG00000013177) ENSNBRG00000013157 Nile tilapia MODERN SPECIES 11 tmem216 (ENSONIG00000004303) tmed9 (ENSONIG00000004305) b4galt7 (ENSONIG00000004308) emx3 (ENSONIG00000029650) ENSONIG00000004314 ENSONIG00000034776 LTC4S (ENSONIG00000004315) MAML1 (ENSONIG00000004317) canx (ENSONIG00000004319) mgat4b (ENSONIG00000004334) DGKQ (ENSONIG00000004338) ENSONIG00000037579 NFKB1 (ENSONIG00000004349) UBE2D3 (ENSONIG00000004373) ENSONIG00000036649 ENSONIG00000004376 ##22 ENSONIG00000016539 ENSONIG00000004400 ENSONIG00000035796 ENSONIG00000004419 PAIP2 (ENSONIG00000039154) neurog1 (ENSONIG00000038395) TBC1D2 (ENSONIG00000004425) SLC44A1 (ENSONIG00000001631) ABCA1 (ENSONIG00000001599) nipsnap3a (ENSONIG00000001595) noa1 (ENSONIG00000001590) rest (ENSONIG00000001589) b4galt1l (ENSONIG00000001585) exosc3 (ENSONIG00000035455) tgfbi (ENSONIG00000001569) Midas cichlid MODERN SPECIES 453 ENSACIG00000023470 ENSACIG00000023456 NFKB1 (ENSACIG00000023434) ENSACIG00000023428 ENSACIG00000023407 ##22 ENSACIG00000023260 cox11 (ENSACIG00000023250) ENSACIG00000023248 CBX2 (ENSACIG00000023237) nog3 (ENSACIG00000023232) ENSACIG00000023223 ENSACIG00000023210 TMEM100 (ENSACIG00000023203) SMIM36 (ENSACIG00000023201) HLF (ENSACIG00000023195) STXBP4 (ENSACIG00000023157) OXER1 (ENSACIG00000023149) Pomacentridae ANCESTRAL SPECIES 163 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747.f ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625.h ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 Pomacentridae_A ANCESTRAL SPECIES 182 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747.f ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625.h ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 Amphiprion ANCESTRAL SPECIES 213 ENSGT00940000153899.a.a ENSGT00940000159747.f ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625.h ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511.b ENSGT00940000169511.a ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 Clown anemonefish MODERN SPECIES 2414 mgat4b (ENSAOCG00000005988) DGKQ (ENSAOCG00000006200) NFKB1 (ENSAOCG00000006283) ENSAOCG00000006314 ENSAOCG00000006350 ##22 Orange clownfish MODERN SPECIES 4 tmed9 (ENSAPEG00000004335) b4galt7 (ENSAPEG00000004311) emx3 (ENSAPEG00000004282) ENSAPEG00000004247 ENSAPEG00000004224 LTC4S (ENSAPEG00000004210) MAML1 (ENSAPEG00000004199) canx (ENSAPEG00000004186) ENSAPEG00000004157 mgat4b (ENSAPEG00000004111) ENSAPEG00000004095 ENSAPEG00000004063 ENSAPEG00000004032 NFKB1 (ENSAPEG00000004000) ENSAPEG00000003941 ENSAPEG00000003875 ##22 ENSAPEG00000003849 ENSAPEG00000003827 ENSAPEG00000003791 ENSAPEG00000003779 neurog1 (ENSAPEG00000003773) ENSAPEG00000003740 ldhd (ENSAPEG00000003712) ENSAPEG00000003686 mlsl (ENSAPEG00000003627) hars (ENSAPEG00000003586) dnd1 (ENSAPEG00000003554) gfra3 (ENSAPEG00000003517) hvcn1 (ENSAPEG00000003497) ENSAPEG00000003484 ENSAPEG00000003478 Spiny chromis MODERN SPECIES 1477 ENSAPOG00000004211 ENSAPOG00000004221 ENSAPOG00000004282 ##22 Bicolor damselfish MODERN SPECIES 1164 ENSSPAG00000011168 ##22 ENSSPAG00000011158 ENSSPAG00000011135 ENSSPAG00000011093 ENSSPAG00000011080 ENSSPAG00000011048 ENSSPAG00000011039 ENSSPAG00000011031 ENSSPAG00000011018 ENSSPAG00000011012 ENSSPAG00000011005 ENSSPAG00000010996 pcdh2ab8 (ENSSPAG00000010986) ENSSPAG00000010979 Percomorphaceae_C ANCESTRAL SPECIES 16 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 ENSGT00940000158869 Eupercaria ANCESTRAL SPECIES 12 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 ENSGT00390000001695 ENSGT00950000183018.b ENSGT00940000154658.b.i.a ENSGT00940000157174.d ENSGT00940000159937 Eupecaria_A ANCESTRAL SPECIES 13 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 ENSGT00390000001695 ENSGT00950000183018.b ENSGT00940000154658.b.i.a ENSGT00940000157174.d ENSGT00940000159937 Ballan wrasse MODERN SPECIES 113 tmem216 (ENSLBEG00000019120) tmed9 (ENSLBEG00000019077) b4galt7 (ENSLBEG00000018940) emx3 (ENSLBEG00000018910) ENSLBEG00000018858 ENSLBEG00000018842 ENSLBEG00000018827 LTC4S (ENSLBEG00000018819) MAML1 (ENSLBEG00000018807) canx (ENSLBEG00000018739) mgat4b (ENSLBEG00000018661) DGKQ (ENSLBEG00000018579) NFKB1 (ENSLBEG00000018512) ENSLBEG00000018466 ENSLBEG00000018409 ##22 ENSLBEG00000018361 ENSLBEG00000018267 ENSLBEG00000018227 dnali1 (ENSLBEG00000018208) neurog1 (ENSLBEG00000018191) Eupecaria_B ANCESTRAL SPECIES 13 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 ENSGT00390000001695 ENSGT00950000183018.b ENSGT00940000154658.b.i.a ENSGT00940000157174.d ENSGT00940000159937 Perciformes ANCESTRAL SPECIES 13 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 Cottioidei ANCESTRAL SPECIES 83 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 Lumpfish MODERN SPECIES 1 tmed9 (ENSCLMG00005016976) b4galt7 (ENSCLMG00005016978) ENSCLMG00005016981 emx3 (ENSCLMG00005016982) ENSCLMG00005016984 ENSCLMG00005016986 LTC4S (ENSCLMG00005016988) MAML1 (ENSCLMG00005016991) canx (ENSCLMG00005016994) ENSCLMG00005017143 ENSCLMG00005017145 mgat4b (ENSCLMG00005017147) DGKQ (ENSCLMG00005017153) NFKB1 (ENSCLMG00005017167) ENSCLMG00005017760 ENSCLMG00005017769 ##22 Stickleback MODERN SPECIES 3 fermt3b (ENSGACG00000016924) FLRT1 (ENSGACG00000016923) macrod1 (ENSGACG00000016922) ENSGACG00000016919 ccdc88b (ENSGACG00000016915) rom1b (ENSGACG00000016903) ENSGACG00000016902 ENSGACG00000016901 LTC4S (ENSGACG00000016900) MAML1 (ENSGACG00000016896) canx (ENSGACG00000016892) mgat4b (ENSGACG00000016886) DGKQ (ENSGACG00000016877) NFKB1 (ENSGACG00000016876) ENSGACG00000016868 ENSGACG00000016862 ##22 ENSGACG00000016859 slc25a48 (ENSGACG00000016856) glra1 (ENSGACG00000016854) g3bp1 (ENSGACG00000016848) sparc (ENSGACG00000016847) SLC36A1 (ENSGACG00000016829) mtnr1al (ENSGACG00000016828) FAT2 (ENSGACG00000016824) lman2 (ENSGACG00000016821) HTR4 (ENSGACG00000016819) SLC26A2 (ENSGACG00000016814) pde6a (ENSGACG00000016811) ENSGACG00000016810 ENSGACG00000016808 ELP1 (ENSGACG00000016803) Perciformes_a ANCESTRAL SPECIES 11 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 Channel bull blenny MODERN SPECIES 202 ENSCGOG00000007194 exosc3 (ENSCGOG00000007192) DGKQ (ENSCGOG00000007184) ENSCGOG00000007180 ##22 ENSCGOG00000007179 ENSCGOG00000007178 ENSCGOG00000007177 ENSCGOG00000007114 ##22 Pike perch MODERN SPECIES 248 ENSSLUG00000014252 ENSSLUG00000014246 DGKQ (ENSSLUG00000014225) NFKB1 (ENSSLUG00000014200) ENSSLUG00000014049 ENSSLUG00000014030 ##22 Eupecaria_C ANCESTRAL SPECIES 12 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT01050000244840.A.b.a ENSGT00940000157465 ENSGT00940000158554 ENSGT00940000177214 ENSGT00390000002781 ENSGT00390000010318 ENSGT00390000011725.c ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT01030000234799 Gilthead seabream MODERN SPECIES 9 ENSSAUG00010005812 tmed9 (ENSSAUG00010005808) tmem216 (ENSSAUG00010005806) TMED9 (ENSSAUG00010005802) b4galt7 (ENSSAUG00010005797) emx3 (ENSSAUG00010005796) ENSSAUG00010005794 LTC4S (ENSSAUG00010005787) ENSSAUG00010005784 MAML1 (ENSSAUG00010005783) canx (ENSSAUG00010005713) mgat4b (ENSSAUG00010005508) DGKQ (ENSSAUG00010005502) NFKB1 (ENSSAUG00010005489) ENSSAUG00010004947 ENSSAUG00010004928 ##22 ENSSAUG00010004927 ENSSAUG00010004925 ENSSAUG00010004920 ENSSAUG00010004915 ENSSAUG00010004912 ENSSAUG00010004907 ENSSAUG00010004906 tgfbi (ENSSAUG00010004895) ENSSAUG00010004882 ENSSAUG00010004879 ENSSAUG00010003361 ENSSAUG00010003347 ENSSAUG00010003346 ENSSAUG00010003342 polr2b (ENSSAUG00010003334) Eupercaria_incertae_sedis ANCESTRAL SPECIES 14 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000155109.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT01050000244840.A.b.a ENSGT00940000157465 ENSGT00940000158554 ENSGT00940000177214 ENSGT00390000002781 ENSGT00390000010318 ENSGT00390000011725.c ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT01030000234799 Large yellow croaker MODERN SPECIES ENSLCRG00005000310 ENSLCRG00005000314 ENSLCRG00005000316 ENSLCRG00005000320 tmem216 (ENSLCRG00005000324) tmed9 (ENSLCRG00005000329) b4galt7 (ENSLCRG00005000335) emx3 (ENSLCRG00005000342) ENSLCRG00005000343 LTC4S (ENSLCRG00005000346) MAML1 (ENSLCRG00005000350) canx (ENSLCRG00005000360) mgat4b (ENSLCRG00005000407) NFKB1 (ENSLCRG00005000662) ENSLCRG00005000753 ENSLCRG00005000939 ##22 ENSLCRG00005000950 ENSLCRG00005000965 ENSLCRG00005000974 ENSLCRG00005000986 ENSLCRG00005000990 neurog1 (ENSLCRG00005000993) F2RL3 (ENSLCRG00005000994) ENSLCRG00005000998 ENSLCRG00005001000 ENSLCRG00005001005 ARAP3 (ENSLCRG00005001049) TBC1D2 (ENSLCRG00005001144) SLC44A1 (ENSLCRG00005001149) ABCA1 (ENSLCRG00005001237) nipsnap3a (ENSLCRG00005001453) European seabass MODERN SPECIES 12 ENSDLAG00005017516 ENSDLAG00005017536 ENSDLAG00005029692 ENSDLAG00005031216 ENSDLAG00005030962 b4galt7 (ENSDLAG00005027918) ENSDLAG00005032177 ENSDLAG00005028311 ENSDLAG00005018530 ENSDLAG00005018540 canx (ENSDLAG00005017668) mgat4b (ENSDLAG00005018580) ENSDLAG00005019443 ENSDLAG00005019478 ENSDLAG00005019558 ENSDLAG00005019614 ##22 ENSDLAG00005035059 ENSDLAG00005008472 ENSDLAG00005009993 tgfbi (ENSDLAG00005030215) ENSDLAG00005033633 ENSDLAG00005032833 ENSDLAG00005026990 ENSDLAG00005003163 ENSDLAG00005032287 SLC44A1 (ENSDLAG00005003400) ENSDLAG00005027122 NIPSNAP3B (ENSDLAG00005026799) noa1 (ENSDLAG00005011470) rest (ENSDLAG00005027077) b4galt1l (ENSDLAG00005002512) Percomorphaceae_D ANCESTRAL SPECIES 17 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000175795 ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 ENSGT00940000158869 Carangaria ANCESTRAL SPECIES 15 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a.h ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 ENSGT00940000158869 Pleuronectoidei ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a ##22 Turbot MODERN SPECIES 4 ENSSMAG00000029343 RNF130 (ENSSMAG00000024891) ENSSMAG00000025438 ENSSMAG00000036047 ENSSMAG00000023085 ENSSMAG00000028608 nipsnap3a (ENSSMAG00000034958) noa1 (ENSSMAG00000037313) rest (ENSSMAG00000031492) b4galt1l (ENSSMAG00000032284) exosc3 (ENSSMAG00000023796) ENSSMAG00000029945 ENSSMAG00000028932 ENSSMAG00000006253 ENSSMAG00000031359 ENSSMAG00000006097 ##22 ENSSMAG00000006078 ENSSMAG00000032935 ENSSMAG00000036257 ENSSMAG00000006049 ENSSMAG00000006037 ENSSMAG00000028744 ENSSMAG00000006012 ENSSMAG00000005971 ENSSMAG00000005820 ENSSMAG00000005758 ENSSMAG00000005812 ENSSMAG00000035912 ENSSMAG00000026109 ENSSMAG00000006811 ENSSMAG00000006786 Tongue sole MODERN SPECIES 6 ENSCSEG00000005373 TBC1D9B (ENSCSEG00000005382) rnf130 (ENSCSEG00000005413) F2RL3 (ENSCSEG00000005425) TBC1D2 (ENSCSEG00000005428) SLC44A1 (ENSCSEG00000005435) ABCA1 (ENSCSEG00000005451) nipsnap3a (ENSCSEG00000005511) noa1 (ENSCSEG00000005517) rest (ENSCSEG00000005522) b4galt1l (ENSCSEG00000005529) exosc3 (ENSCSEG00000005539) tgfbi (ENSCSEG00000005542) ENSCSEG00000005554 ARAP3 (ENSCSEG00000005569) ENSCSEG00000005609 ##22 ENSCSEG00000005626 ubl3b (ENSCSEG00000005632) FOXO4 (ENSCSEG00000005641) ENSCSEG00000005645 zgc:92907 (ENSCSEG00000005652) rap2c (ENSCSEG00000005653) mbnl3 (ENSCSEG00000005665) hs6st2 (ENSCSEG00000005681) zgc:153018 (ENSCSEG00000005682) ENSCSEG00000005686 nudt22 (ENSCSEG00000005696) dnajc4 (ENSCSEG00000005701) ENSCSEG00000005705 stx5a (ENSCSEG00000005715) zgc:162144 (ENSCSEG00000005710) Carangaria_A ANCESTRAL SPECIES 17 ENSGT00390000003288 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a.h ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 ENSGT00940000158869 Seriola ANCESTRAL SPECIES 125 ENSGT00940000158554 ENSGT00940000157465 ENSGT01050000244840.A.b.a ENSGT00940000158869 ENSGT00940000164810 ENSGT00530000063860.a ENSGT00940000153596.A ENSGT00940000155244.d ENSGT00940000155341 ENSGT00390000001695 ENSGT00950000183018.b ENSGT00940000154658.b.i.a.h ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a Greater amberjack MODERN SPECIES 127 TBC1D9B (ENSSDUG00000016155) rnf130 (ENSSDUG00000016100) F2RL3 (ENSSDUG00000016088) ARAP3 (ENSSDUG00000015977) ENSSDUG00000015951 tgfbi (ENSSDUG00000015905) exosc3 (ENSSDUG00000015892) b4galt1l (ENSSDUG00000015879) rest (ENSSDUG00000015873) noa1 (ENSSDUG00000015865) nipsnap3a (ENSSDUG00000015845) ABCA1 (ENSSDUG00000015752) DGKQ (ENSSDUG00000015709) NFKB1 (ENSSDUG00000015678) ENSSDUG00000015666 ENSSDUG00000015593 ##22 ENSSDUG00000015514 ENSSDUG00000015369 ENSSDUG00000015318 Yellowtail amberjack MODERN SPECIES 3020 TBC1D9B (ENSSLDG00000017009) rnf130 (ENSSLDG00000017060) F2RL3 (ENSSLDG00000017115) ARAP3 (ENSSLDG00000017137) ENSSLDG00000017200 tgfbi (ENSSLDG00000017226) exosc3 (ENSSLDG00000017276) b4galt1l (ENSSLDG00000017304) rest (ENSSLDG00000017328) noa1 (ENSSLDG00000017344) nipsnap3a (ENSSLDG00000017361) ABCA1 (ENSSLDG00000017383) DGKQ (ENSSLDG00000017466) NFKB1 (ENSSLDG00000017521) ENSSLDG00000017574 ENSSLDG00000017613 ##22 ENSSLDG00000017641 Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 463 emx3 (ENSLCAG00010006916) ENSLCAG00010006914 LTC4S (ENSLCAG00010006911) MAML1 (ENSLCAG00010006910) canx (ENSLCAG00010006865) mgat4b (ENSLCAG00010006838) DGKQ (ENSLCAG00010006811) NFKB1 (ENSLCAG00010006790) ENSLCAG00010006633 ENSLCAG00010006588 ##22 Barramundi perch MODERN SPECIES 650 ENSLCAG00010012862 ##22 Anabantaria ANCESTRAL SPECIES 15 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000175795 ENSGT00940000153899.a.a ENSGT00940000159747 ENSGT00940000157712 ENSGT00940000157425.A ENSGT00950000183026.A.a.b ENSGT00940000160738 ENSGT00950000183201.b.b.b.a ENSGT00950000182915.a.a.a ENSGT00940000156526.a ENSGT00940000168305 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00530000063860.a ENSGT00940000164810 ENSGT00940000158869 Zig-zag eel MODERN SPECIES 1 ENSMAMG00000013358 ENSMAMG00000013373 ENSMAMG00000013380 ENSMAMG00000013395 b4galt7 (ENSMAMG00000013415) ENSMAMG00000028293 ENSMAMG00000013449 LTC4S (ENSMAMG00000028039) ENSMAMG00000013493 canx (ENSMAMG00000013509) mgat4b (ENSMAMG00000013534) ENSMAMG00000013527 ENSMAMG00000013592 ENSMAMG00000013622 ENSMAMG00000013695 ENSMAMG00000013744 ##22 ENSMAMG00000013806 ENSMAMG00000013840 ENSMAMG00000013851 neurog1 (ENSMAMG00000013881) ENSMAMG00000025355 ENSMAMG00000013911 ENSMAMG00000014007 ENSMAMG00000027354 tgfbi (ENSMAMG00000014059) exosc3 (ENSMAMG00000014092) b4galt1l (ENSMAMG00000014115) rest (ENSMAMG00000014139) noa1 (ENSMAMG00000014148) nipsnap3a (ENSMAMG00000014165) ENSMAMG00000014202 Anabantoidei ANCESTRAL SPECIES 11 ENSGT00940000160403 ENSGT00940000155521.a.a ENSGT00940000175795 ENSGT00940000156526.a ENSGT00950000182915.a.a.a ENSGT00950000183201.b.b.b.a ENSGT00940000160738 ENSGT00950000183026.A.a.b ENSGT00940000157425.A ENSGT00940000157712 ENSGT00940000159747 ENSGT00940000153899.a.a ENSGT00940000168305 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000169511 ENSGT00940000153322.B.d.a ENSGT00390000017284.b ENSGT00940000167363 ENSGT00940000159937 ENSGT00940000157174.d ENSGT00940000154658.b.i.a ENSGT00950000183018.b ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00940000164810 ENSGT00940000158869 ENSGT01050000244840.A.b.a Climbing perch MODERN SPECIES 22 ENSATEG00000029734 ENSATEG00000018020 ENSATEG00000018043 mgat4b (ENSATEG00000018078) canx (ENSATEG00000018130) ENSATEG00000018177 LTC4S (ENSATEG00000018191) ENSATEG00000029494 ENSATEG00000027104 b4galt7 (ENSATEG00000027061) ENSATEG00000018306 ENSATEG00000018323 ENSATEG00000018340 ENSATEG00000018380 ENSATEG00000018427 ENSATEG00000018447 ##22 ENSATEG00000018501 ENSATEG00000018516 ENSATEG00000018534 ENSATEG00000018598 ENSATEG00000018604 ENSATEG00000018620 ENSATEG00000018648 ENSATEG00000018673 ENSATEG00000018789 ENSATEG00000027072 noa1 (ENSATEG00000018828) rest (ENSATEG00000018878) b4galt1l (ENSATEG00000018933) exosc3 (ENSATEG00000018952) ENSATEG00000019047 Siamese fighting fish MODERN SPECIES 1 PCDH1 (ENSBSLG00000018852) ENSBSLG00000018865 mgat4b (ENSBSLG00000018940) ENSBSLG00000002337 canx (ENSBSLG00000002477) MAML1 (ENSBSLG00000002949) LTC4S (ENSBSLG00000002956) ENSBSLG00000002966 emx3 (ENSBSLG00000002975) b4galt7 (ENSBSLG00000003670) tmed9 (ENSBSLG00000003739) tmem216 (ENSBSLG00000003780) DGKQ (ENSBSLG00000003829) NFKB1 (ENSBSLG00000003947) ENSBSLG00000004095 ENSBSLG00000004170 ##22 ENSBSLG00000004753 ENSBSLG00000004827 ENSBSLG00000004900 neurog1 (ENSBSLG00000005027) TBC1D2 (ENSBSLG00000005095) SLC44A1 (ENSBSLG00000005715) nipsnap3a (ENSBSLG00000005938) noa1 (ENSBSLG00000006496) ENSBSLG00000006817 rest (ENSBSLG00000006825) b4galt1l (ENSBSLG00000006844) exosc3 (ENSBSLG00000006929) b4galt1l (ENSBSLG00000006955) ENSBSLG00000007716 ENSBSLG00000007944 Protacanthopterygii ANCESTRAL SPECIES 58 ENSGT00940000156001.d ENSGT00940000153668.B ENSGT00940000163832 ENSGT00940000158505.n.a ENSGT00940000157622.b ENSGT00940000154495.b.a.a.b ENSGT01100000263491.a.b.a.b.a.a ENSGT00940000156045.a ENSGT00940000165124.c ENSGT00940000164963.c.a.d ENSGT00940000164685.b ENSGT00940000178786 ENSGT00940000164374.B.c.b ENSGT01030000234592.A.b.b.b.b ENSGT00940000165332.A.c ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d.f ENSGT00940000153596.A ENSGT01030000234799 ENSGT00950000183018.b ENSGT00940000154658.b.i.a ENSGT00940000157174.d ENSGT00940000159937.h ENSGT00390000013344 ENSGT00940000162158 Northern pike MODERN SPECIES 3 ENSELUG00000024043 rtn4rl2b (ENSELUG00000024026) ENSELUG00000024007 ENSELUG00000026730 slc43a3b (ENSELUG00000023978) ENSELUG00000033803 ENSELUG00000023967 CTNND1 (ENSELUG00000023944) ENSELUG00000023752 ENSELUG00000023713 ENSELUG00000023694 ENSELUG00000023627 ENSELUG00000024647 ENSELUG00000023621 ENSELUG00000023616 ENSELUG00000023593 ##22 CPXM1 (ENSELUG00000023459) ENSELUG00000024850 COX18 (ENSELUG00000023392) igfbp7 (ENSELUG00000023380) polr2b (ENSELUG00000023372) noa1 (ENSELUG00000023295) rest (ENSELUG00000023289) b4galt1l (ENSELUG00000023279) exosc3 (ENSELUG00000023260) ENSELUG00000023239 nipsnap3a (ENSELUG00000023231) ABCA1 (ENSELUG00000023201) SLC44A1 (ENSELUG00000023094) TBC1D2 (ENSELUG00000023015) ELP1 (ENSELUG00000022902) Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 584 ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 Salmoninae_a ANCESTRAL SPECIES 4 ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042 ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00990000214210 ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b ENSGT00940000155857.f.b.d Salmo ANCESTRAL SPECIES 44 ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042 ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00990000214210 ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b ENSGT00940000155857.f.b.d River trout MODERN SPECIES 6 fam53c (ENSSTUG00000011224) slbp2 (ENSSTUG00000011232) ENSSTUG00000011244 foxi3a (ENSSTUG00000011289) nhp2 (ENSSTUG00000011301) grpel2 (ENSSTUG00000011320) afap1l1b (ENSSTUG00000011335) ablim3 (ENSSTUG00000011402) adrb2b (ENSSTUG00000011494) ubtd2 (ENSSTUG00000011499) ENSSTUG00000011515 IL12B (ENSSTUG00000011518) UBLCP1 (ENSSTUG00000011536) RNF145 (ENSSTUG00000011631) EBF1 (ENSSTUG00000011739) ##22 ENSSTUG00000011744 ##22 CLINT1 (ENSSTUG00000011752) ENSSTUG00000011800 TCERG1 (ENSSTUG00000011818) ENSSTUG00000012111 ##21 PCYOX1L (ENSSTUG00000012245) ENSSTUG00000012264 CREBRF (ENSSTUG00000012271) BNIP1 (ENSSTUG00000012299) STC2 (ENSSTUG00000012322) ##32 bod1 (ENSSTUG00000012340) CPEB4 (ENSSTUG00000012363) nsg2 (ENSSTUG00000012611) msx2b (ENSSTUG00000012621) drd1b (ENSSTUG00000012628) RAD50 (ENSSTUG00000012660) Oncorhynchus ANCESTRAL SPECIES 41 ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.c.a.b ##22 ENSGT00950000182859.A.a.b.b.c.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000161042.c ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c ENSGT00940000160880.g ENSGT00510000046929.b.c Oncorhynchus_a ANCESTRAL SPECIES 43 ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.a.b.g.b.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a ##22 ENSGT00950000182859.A.a.b.b.c.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000161042.c ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c ENSGT00940000160880.g ENSGT00510000046929.b.c Coho salmon MODERN SPECIES 20 foxi3a (ENSOKIG00005037555) nhp2 (ENSOKIG00005037534) grpel2 (ENSOKIG00005037510) afap1l1b (ENSOKIG00005037475) ENSOKIG00005037461 ABLIM3 (ENSOKIG00005037308) adrb2b (ENSOKIG00005037279) ubtd2 (ENSOKIG00005037269) ENSOKIG00005037259 ENSOKIG00005037227 UBLCP1 (ENSOKIG00005037194) RNF145 (ENSOKIG00005037114) ENSOKIG00005037103 EBF1 (ENSOKIG00005037089) ##22 EBF1 (ENSOKIG00005037083) ##22 ENSOKIG00005037071 ##22 CLINT1 (ENSOKIG00005037005) TCERG1 (ENSOKIG00005036688) DLX6 (ENSOKIG00005036642) ENSOKIG00005036438 ##21 ATP6V0E1 (ENSOKIG00005036389) CREBRF (ENSOKIG00005036368) BNIP1 (ENSOKIG00005036339) STC2 (ENSOKIG00005036318) ##32 bod1 (ENSOKIG00005036294) CPEB4 (ENSOKIG00005035997) nsg2 (ENSOKIG00005035972) msx2b (ENSOKIG00005035967) drd1b (ENSOKIG00005035960) POU4F3 (ENSOKIG00005035942) RBM27 (ENSOKIG00005035894) Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 34 ENSGT00940000163832 ENSGT00940000158505.n.a.c ENSGT00940000164807.G.a.b.e.a.a.b.b ENSGT00940000157622.b.h ENSGT00940000154495.b.a.a.b.b ENSGT01100000263491.a.b.a.b.a.a.b.b ENSGT00940000156045.a.d ENSGT00940000165124.c.g.a ENSGT00940000164963.c.a.d.a ENSGT00940000164685.b.h ENSGT00940000178786 ENSGT00940000164374.B.c.b.d.a.b ENSGT00940000164374.B.c.b.d.b.b ENSGT01030000234592.A.b.b.b.b.d ENSGT00940000165332.A.c.a ENSGT00950000182859.A.a.a.a.f.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a.i ENSGT00950000183132.C.bb ENSGT00390000001695.f ENSGT00940000155341.d ENSGT00940000155244.d.f.b ENSGT01030000234799.c ENSGT00950000183018.b.g ENSGT00940000154658.b.i.a.c ENSGT00940000157174.d.i ENSGT00940000159937.h.b ENSGT00390000013344.c ENSGT00940000155007.n.a.a ENSGT00950000182938.b.b.b.a.b.b.f Huchen DUPLICATION Huchen MODERN SPECIES 189 zdhhc5b (ENSHHUG00000029160) clp1 (ENSHHUG00000029174) ENSHHUG00000029175 rtn4rl2b (ENSHHUG00000029183) ENSHHUG00000029187 ENSHHUG00000029192 ENSHHUG00000029193 CTNND1 (ENSHHUG00000029195) ENSHHUG00000029354 ENSHHUG00000029358 ENSHHUG00000029391 ENSHHUG00000029395 ENSHHUG00000029399 ENSHHUG00000029402 ENSHHUG00000029407 ENSHHUG00000029412 ##22 ENSHHUG00000029416 ##22 CPXM1 (ENSHHUG00000029425) COX18 (ENSHHUG00000029426) igfbp7 (ENSHHUG00000029427) POLR2B (ENSHHUG00000029432) noa1 (ENSHHUG00000029536) rest (ENSHHUG00000029544) b4galt1l (ENSHHUG00000029547) ENSHHUG00000029550 nipsnap3a (ENSHHUG00000029554) ABCA1 (ENSHHUG00000029601) SLC44A1 (ENSHHUG00000030940) TBC1D2 (ENSHHUG00000031002) ELP1 (ENSHHUG00000031028) ENSHHUG00000031463 Huchen MODERN SPECIES 189 clp1 (ENSHHUG00000029174) ENSHHUG00000029175 rtn4rl2b (ENSHHUG00000029183) ENSHHUG00000029187 ENSHHUG00000029192 ENSHHUG00000029193 CTNND1 (ENSHHUG00000029195) ENSHHUG00000029354 ENSHHUG00000029358 ENSHHUG00000029391 ENSHHUG00000029395 ENSHHUG00000029399 ENSHHUG00000029402 ENSHHUG00000029407 ENSHHUG00000029412 ##22 ENSHHUG00000029416 ##22 CPXM1 (ENSHHUG00000029425) COX18 (ENSHHUG00000029426) igfbp7 (ENSHHUG00000029427) POLR2B (ENSHHUG00000029432) noa1 (ENSHHUG00000029536) rest (ENSHHUG00000029544) b4galt1l (ENSHHUG00000029547) ENSHHUG00000029550 nipsnap3a (ENSHHUG00000029554) ABCA1 (ENSHHUG00000029601) SLC44A1 (ENSHHUG00000030940) TBC1D2 (ENSHHUG00000031002) ELP1 (ENSHHUG00000031028) ENSHHUG00000031463 ENSHHUG00000031478 Salmoninae_a ANCESTRAL SPECIES 40 ENSGT00940000163832 ENSGT00940000158505.n.a.c ENSGT00940000164807.G.a.b.e.a.a.b.b ENSGT00940000157622.b.h ENSGT00940000154495.b.a.a.b.b ENSGT01100000263491.a.b.a.b.a.a.b.b ENSGT00940000156045.a.d ENSGT00940000165124.c.g.a ENSGT00940000164963.c.a.d.a ENSGT00940000164685.b.h ENSGT00940000164374.B.c.b.d.b.b ENSGT00940000178786 ENSGT00940000164374.B.c.b.d.a.b ENSGT01030000234592.A.b.b.b.b.d ENSGT00940000165332.A.c.a ENSGT00950000182859.A.a.a.a.f.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a.i ENSGT00950000183132.C.bb ENSGT00390000001695.f ENSGT00940000155341.d ENSGT00940000155244.d.f.b ENSGT01030000234799.c ENSGT00950000183018.b.g ENSGT00940000154658.b.i.a.c ENSGT00940000157174.d.i ENSGT00940000159937.h.b ENSGT00390000013344.c ENSGT00940000155007.n.a.a ENSGT00950000182938.b.b.b.a.b.b.f Oncorhynchus ANCESTRAL SPECIES 39 ENSGT00940000156001.d.c ENSGT00940000153668.B.g ENSGT00940000163832 ENSGT00940000158505.n.a.c ENSGT01100000263491.a.b.a.b.a.a.b.b ENSGT00940000157622.b.h ENSGT00940000154495.b.a.a.b.b ENSGT00940000156045.a.d ENSGT00940000165124.c.g.a ENSGT00940000164963.c.a.d.a ENSGT00940000164685.b.h ENSGT00940000178786 ENSGT00940000164374.B.c.b.d.a.b ENSGT00940000164374.B.c.b.d.b.b ENSGT00940000165332.A.c.a ENSGT00950000182859.A.a.a.a.f.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a.i ENSGT00950000183132.C.bb ENSGT00390000001695.f ENSGT00940000155341.d ENSGT00940000155244.d.f.b ENSGT01030000234799.c ENSGT00950000183018.b.g ENSGT00940000154658.b.i.a.c ENSGT00940000157174.d.i ENSGT00940000159937.h.b ENSGT00390000013344.c ENSGT00940000155007.n.a.a ENSGT00950000182938.b.b.b.a.b.b.f Rainbow trout MODERN SPECIES 23 ENSOMYG00000022202 ENSOMYG00000022220 ENSOMYG00000022231 rtn4rl2b (ENSOMYG00000053672) ENSOMYG00000022242 ENSOMYG00000022274 ENSOMYG00000022310 ENSOMYG00000022322 ENSOMYG00000022357 ENSOMYG00000069378 ENSOMYG00000037629 ENSOMYG00000075536 ENSOMYG00000037666 ENSOMYG00000022430 ENSOMYG00000022447 ENSOMYG00000022509 ##22 ENSOMYG00000056323 ENSOMYG00000051104 ENSOMYG00000022653 ENSOMYG00000022719 igfbp7 (ENSOMYG00000022732) POLR2B (ENSOMYG00000022919) noa1 (ENSOMYG00000023221) rest (ENSOMYG00000058641) b4galt1l (ENSOMYG00000076799) ENSOMYG00000023275 nipsnap3a (ENSOMYG00000023294) ENSOMYG00000026618 SLC44A1 (ENSOMYG00000041543) ENSOMYG00000041666 ENSOMYG00000041838 Oncorhynchus_a ANCESTRAL SPECIES 40 ENSGT00940000156001.d.c ENSGT00940000153668.B.g ENSGT00940000163832 ENSGT00940000158505.n.a.c ENSGT00940000157622.b.h ENSGT00940000154495.b.a.a.b.b ENSGT01100000263491.a.b.a.b.a.a.b.b ENSGT00940000156045.a.d ENSGT00940000165124.c.g.a ENSGT00940000164963.c.a.d.a ENSGT00940000164685.b.h ENSGT00940000164374.B.c.b.d.b.b ENSGT00940000178786 ENSGT00940000164374.B.c.b.c ENSGT00940000165332.A.c.a ENSGT00950000182859.A.a.a.a.f.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a.i ENSGT00950000183132.C.bb ENSGT00390000001695.f ENSGT00940000155341.d ENSGT00940000155244.d.f.b ENSGT01030000234799.c ENSGT00950000183018.b.g ENSGT00940000154658.b.i.a.c ENSGT00940000157174.d.i ENSGT00940000159937.h.b ENSGT00390000013344.c ENSGT00940000155007.n.a.a ENSGT00950000182938.b.b.b.a.b.b.f Chinook salmon MODERN SPECIES 32 tmx2a (ENSOTSG00005021833) zdhhc5b (ENSOTSG00005021834) clp1 (ENSOTSG00005021835) ENSOTSG00005021836 ENSOTSG00005021837 ENSOTSG00005021838 SLC43A3 (ENSOTSG00005021854) ENSOTSG00005022209 CTNND1 (ENSOTSG00005022211) ENSOTSG00005022222 ENSOTSG00005022230 ENSOTSG00005022233 ENSOTSG00005022238 ENSOTSG00005022239 ENSOTSG00005022240 ENSOTSG00005022244 ##22 CPXM1 (ENSOTSG00005022711) COX18 (ENSOTSG00005022746) igfbp7 (ENSOTSG00005022748) POLR2B (ENSOTSG00005022750) noa1 (ENSOTSG00005022766) rest (ENSOTSG00005022767) b4galt1l (ENSOTSG00005016595) ENSOTSG00005016598 nipsnap3a (ENSOTSG00005016599) ABCA1 (ENSOTSG00005016622) SLC44A1 (ENSOTSG00005033287) TBC1D2 (ENSOTSG00005033426) ELP1 (ENSOTSG00005033435) ENSOTSG00005038490 CPLX1 (ENSOTSG00005038491) Coho salmon MODERN SPECIES 6 med19a (ENSOKIG00005011196) tmx2a (ENSOKIG00005011240) zdhhc5b (ENSOKIG00005011267) clp1 (ENSOKIG00005011285) ENSOKIG00005011303 rtn4rl2b (ENSOKIG00005011324) ENSOKIG00005011330 SLC43A3 (ENSOKIG00005011343) smtnl1 (ENSOKIG00005011352) CTNND1 (ENSOKIG00005011392) ENSOKIG00005011502 ENSOKIG00005011525 ENSOKIG00005011561 ENSOKIG00005011577 ENSOKIG00005011622 ENSOKIG00005011712 ##22 CPXM1 (ENSOKIG00005012175) COX18 (ENSOKIG00005012328) igfbp7 (ENSOKIG00005012342) POLR2B (ENSOKIG00005012387) noa1 (ENSOKIG00005012664) rest (ENSOKIG00005012673) b4galt1l (ENSOKIG00005012681) ENSOKIG00005012691 nipsnap3a (ENSOKIG00005012715) ABCA1 (ENSOKIG00005013160) SLC44A1 (ENSOKIG00005022012) TBC1D2 (ENSOKIG00005022157) ELP1 (ENSOKIG00005022302) ENSOKIG00005025224 CPLX1 (ENSOKIG00005025293) Salmo ANCESTRAL SPECIES 43 ENSGT00940000156001.d.c ENSGT00940000153668.B.g ENSGT00940000163832 ENSGT00940000158505.n.a.c ENSGT00940000164807.G.a.b.e.a.a.b.b ENSGT00940000157622.b.h ENSGT00940000154495.b.a.a.b.b ENSGT01100000263491.a.b.a.b.a.a.b.b ENSGT00940000156045.a.d ENSGT00940000165124.c.g.a ENSGT00940000164963.c.a.d.a ENSGT00940000164685.b.h ENSGT00940000164374.B.c.b.d.a.b ENSGT01030000234592.A.b.b.b.b.d ENSGT00940000165332.A.c.a ENSGT00950000182859.A.a.a.a.f.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A.a ENSGT00530000063555.A.a.a.i ENSGT00950000183132.C.bb ENSGT00390000001695.f ENSGT00940000155341.d ENSGT00940000155244.d.f.b ENSGT01030000234799.c ENSGT00950000183018.b.g ENSGT00940000154658.b.i.a.c ENSGT00940000157174.d.i ENSGT00940000159937.h.b ENSGT00390000013344.c ENSGT00940000155007.n.a.a ENSGT00950000182938.b.b.b.a.b.b.f River trout MODERN SPECIES 4 zdhhc5b (ENSSTUG00000030055) clp1 (ENSSTUG00000030023) ENSSTUG00000030014 rtn4rl2b (ENSSTUG00000030004) ENSSTUG00000029997 SLC43A3 (ENSSTUG00000029987) smtnl1 (ENSSTUG00000029975) ENSSTUG00000029964 CTNND1 (ENSSTUG00000029841) ENSSTUG00000029825 ENSSTUG00000029811 ENSSTUG00000029771 ENSSTUG00000029764 ENSSTUG00000029751 ENSSTUG00000029736 ENSSTUG00000029029 ##22 CPXM1 (ENSSTUG00000028640) COX18 (ENSSTUG00000028604) igfbp7 (ENSSTUG00000028591) POLR2B (ENSSTUG00000028472) noa1 (ENSSTUG00000028463) rest (ENSSTUG00000028453) b4galt1l (ENSSTUG00000028445) ENSSTUG00000028438 nipsnap3a (ENSSTUG00000028426) ABCA1 (ENSSTUG00000017159) SLC44A1 (ENSSTUG00000016866) TBC1D2 (ENSSTUG00000016854) ELP1 (ENSSTUG00000016174) ENSSTUG00000016145 ENSSTUG00000016122 Atlantic salmon MODERN SPECIES 28 ENSSSAG00000074348 tmx2a (ENSSSAG00000121791) ENSSSAG00000074337 ENSSSAG00000074329 ENSSSAG00000074328 rtn4rl2b (ENSSSAG00000092745) ENSSSAG00000114025 slc43a3b (ENSSSAG00000074322) smtnl1 (ENSSSAG00000082847) ENSSSAG00000087239 ENSSSAG00000074144 ENSSSAG00000074126 ENSSSAG00000074120 ENSSSAG00000109426 ENSSSAG00000073919 ENSSSAG00000072129 ##22 ENSSSAG00000072026 ENSSSAG00000072021 igfbp7 (ENSSSAG00000045171) rpb2 (ENSSSAG00000071973) noa1 (ENSSSAG00000071956) rest (ENSSSAG00000099469) ENSSSAG00000116895 nipsnap3a (ENSSSAG00000071926) ENSSSAG00000053066 SLC44A1 (ENSSSAG00000050722) ENSSSAG00000050660 ENSSSAG00000048788 SMU1 (ENSSSAG00000048740) CPLX1 (ENSSSAG00000087659) ENSSSAG00000048732 Salmoninae ANCESTRAL SPECIES 168 ENSGT00940000156001.d.d ENSGT00940000153668.B.h ENSGT00940000175691 ENSGT00940000158505.n.a.d ENSGT00940000157622.b.g ENSGT00940000154495.b.a.a.b.a ENSGT01100000263491.a.b.a.b.a.a.b.a ENSGT00940000156045.a.c ENSGT00940000165124.c.g.b ENSGT00940000164963.c.a.d.b ENSGT00940000164685.b.g ENSGT00940000164374.B.c.b.d.a.a ENSGT00940000164374.B.c.b.d.b.a ENSGT01030000234592.A.b.b.b.b.c ENSGT00940000165332.A.c.b ENSGT00950000182859.A.a.a.a.f.b ##22 ENSGT00940000173239 ENSGT00530000063555.A.a.a.j ENSGT00950000183132.C.cb ENSGT00390000001695.e ENSGT00940000155341.c ENSGT00940000155244.d.f.a ENSGT00940000153596.A ENSGT01030000234799.d ENSGT00950000183018.b.h ENSGT00940000154658.b.i.a.d ENSGT00940000157174.d.j ENSGT00940000159937.h.a ENSGT00390000013344.d ENSGT00940000162158 ENSGT00940000155007.n.a.b Huchen MODERN SPECIES 191 ENSHHUG00000036849 ENSHHUG00000036857 ENSHHUG00000036845 ENSHHUG00000036837 ENSHHUG00000036833 ENSHHUG00000036831 ENSHHUG00000036829 ENSHHUG00000036827 ENSHHUG00000036797 ENSHHUG00000036764 ##22 ENSHHUG00000036756 ENSHHUG00000036751 ENSHHUG00000036746 igfbp7 (ENSHHUG00000036744) POLR2B (ENSHHUG00000036725) ENSHHUG00000036719 rest (ENSHHUG00000036715) b4galt1l (ENSHHUG00000036708) exosc3 (ENSHHUG00000036701) ENSHHUG00000036696 nipsnap3a (ENSHHUG00000036676) ABCA1 (ENSHHUG00000034358) SLC44A1 (ENSHHUG00000034302) TBC1D2 (ENSHHUG00000034292) ELP1 (ENSHHUG00000034171) Salmoninae_a ANCESTRAL SPECIES 18 ENSGT00940000153668.B.h ENSGT00940000175691.d ENSGT00940000175691.c ENSGT00940000158505.n.a.d ENSGT00940000164807.G.a.b.e.a.a.b.a ENSGT00940000157622.b.g ENSGT00940000154495.b.a.a.b.a ENSGT01100000263491.a.b.a.b.a.a.b.a ENSGT00940000156045.a.c ENSGT00940000165124.c.g.b ENSGT00940000164963.c.a.d.b ENSGT00940000164685.b.g ENSGT00940000164374.B.c.b.d.a.a ENSGT01030000234592.A.b.b.b.b.c ENSGT00940000165332.A.c.b ENSGT00950000182859.A.a.a.a.f.b ##22 ENSGT00940000165798.c.b.a.a ENSGT00940000173239 ENSGT00530000063555.A.a.a.j ENSGT00950000183132.C.cb ENSGT00390000001695.e ENSGT00940000155341.c ENSGT00940000155244.d.f.a ENSGT00940000153596.A ENSGT01030000234799.d ENSGT00950000183018.b.h ENSGT00940000154658.b.i.a.d ENSGT00940000157174.d.j ENSGT00940000159937.h.a ENSGT00390000013344.d ENSGT00940000162158 Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00940000156001.d.d ENSGT00940000153668.B.h ENSGT00940000175691.d ENSGT00940000158505.n.a.d ENSGT00940000164807.G.a.b.e.a.a.b.a ENSGT00940000157622.b.g ENSGT00940000154495.b.a.a.b.a ENSGT01100000263491.a.b.a.b.a.a.b.a ENSGT00940000156045.a.c ENSGT00940000165124.c.g.b ENSGT00940000164963.c.a.d.b ENSGT00940000164685.b.g ENSGT00940000164374.B.c.b.d.a.a ENSGT01030000234592.A.b.b.b.b.c ENSGT00940000165332.A.c.b ENSGT00950000182859.A.a.a.a.f.b ##22 ENSGT00940000165798.c.b.a.a ENSGT00940000173239 ENSGT00530000063555.A.a.a.j ENSGT00950000183132.C.cb ENSGT00390000001695.e ENSGT00940000155341.c ENSGT00940000155244.d.f.a ENSGT00940000153596.A ENSGT01030000234799.d ENSGT00950000183018.b.h ENSGT00940000154658.b.i.a.d ENSGT00940000157174.d.j ENSGT00940000159937.h.a ENSGT00390000013344.d ENSGT00940000162158 Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00940000162656 ENSGT00390000003751.b.a.b ENSGT00940000156001.d.d ENSGT00940000153668.B.h ENSGT00940000175691.d ENSGT00940000158505.n.a.d ENSGT00940000157622.b.g ENSGT00940000154495.b.a.a.b.a ENSGT00940000156045.a.c ENSGT00940000165124.c.g.b ENSGT00940000164963.c.a.d.b ENSGT00940000164685.b.g ENSGT00940000164374.B.c.b.d.a.a ENSGT01030000234592.A.b.b.b.b.c ENSGT00940000165332.A.c.b ENSGT00950000182859.A.a.a.a.f.b ##22 ENSGT00940000165798.c.b.a.a ENSGT00940000173239 ENSGT00530000063555.A.a.a.j ENSGT00950000183132.C.cb ENSGT00940000155341.c ENSGT00940000155244.d.f.a ENSGT00940000153596.A ENSGT01030000234799.d ENSGT00950000183018.b.h ENSGT00940000154658.b.i.a.d ENSGT00940000157174.d.j ENSGT00940000159937.h.a ENSGT00390000013344.d ENSGT00940000162158 ENSGT00940000155007.n.a.b Coho salmon MODERN SPECIES 10 ZDHHC5 (ENSOKIG00005024738) CLP1 (ENSOKIG00005024793) ENSOKIG00005024808 rtn4rl2b (ENSOKIG00005024813) ENSOKIG00005024820 SLC43A3 (ENSOKIG00005024863) smtnl1 (ENSOKIG00005024902) CTNND1 (ENSOKIG00005025059) ENSOKIG00005027323 ENSOKIG00005027350 ENSOKIG00005027376 ENSOKIG00005027468 ENSOKIG00005027490 ENSOKIG00005027499 ENSOKIG00005027506 ENSOKIG00005027556 ##22 ENSOKIG00005027944 ENSOKIG00005028023 igfbp7 (ENSOKIG00005028041) POLR2B (ENSOKIG00005028080) rest (ENSOKIG00005028207) b4galt1l (ENSOKIG00005028217) exosc3 (ENSOKIG00005028223) nipsnap3a (ENSOKIG00005028274) ABCA1 (ENSOKIG00005028349) SLC44A1 (ENSOKIG00005029329) TBC1D2 (ENSOKIG00005029414) ELP1 (ENSOKIG00005029583) ACTL7A (ENSOKIG00005031641) SMU1 (ENSOKIG00005031652) ENSOKIG00005031690 Chinook salmon MODERN SPECIES 13 tmx2a (ENSOTSG00005011971) ZDHHC5 (ENSOTSG00005011980) clp1 (ENSOTSG00005011983) ENSOTSG00005011984 rtn4rl2b (ENSOTSG00005011985) ENSOTSG00005011989 slc43a3b (ENSOTSG00005011992) smtnl1 (ENSOTSG00005011996) CTNND1 (ENSOTSG00005012015) ENSOTSG00005012185 ENSOTSG00005012187 ENSOTSG00005012189 ENSOTSG00005012190 ENSOTSG00005012191 ENSOTSG00005012192 ENSOTSG00005012197 ##22 ENSOTSG00005032014 igfbp7 (ENSOTSG00005032047) POLR2B (ENSOTSG00005032048) rest (ENSOTSG00005032228) b4galt1l (ENSOTSG00005032229) exosc3 (ENSOTSG00005032230) ENSOTSG00005032231 nipsnap3a (ENSOTSG00005032232) ABCA1 (ENSOTSG00005032273) ENSOTSG00005042254 SLC44A1 (ENSOTSG00005042255) TBC1D2 (ENSOTSG00005042277) ELP1 (ENSOTSG00005042287) ACTL7A (ENSOTSG00005042863) SMU1 (ENSOTSG00005042865) Rainbow trout MODERN SPECIES 5 ENSOMYG00000037464 ENSOMYG00000037473 ENSOMYG00000037481 rtn4rl2b (ENSOMYG00000037487) ENSOMYG00000037495 ENSOMYG00000037500 ENSOMYG00000058740 ENSOMYG00000037505 ENSOMYG00000037550 ENSOMYG00000037592 ENSOMYG00000037607 ENSOMYG00000066244 ENSOMYG00000065703 ENSOMYG00000056312 ENSOMYG00000037676 ENSOMYG00000037804 ##22 ENSOMYG00000067230 ENSOMYG00000076444 POLR2B (ENSOMYG00000037972) ENSOMYG00000066901 igfbp7 (ENSOMYG00000038012) noa1 (ENSOMYG00000074670) rest (ENSOMYG00000038024) b4galt1l (ENSOMYG00000038034) exosc3 (ENSOMYG00000038044) ENSOMYG00000038050 nipsnap3a (ENSOMYG00000038055) ENSOMYG00000039123 SLC44A1 (ENSOMYG00000043363) ENSOMYG00000043430 ENSOMYG00000043556 Salmo ANCESTRAL SPECIES 24 ENSGT00940000156001.d.d ENSGT00940000153668.B.h ENSGT00940000175691.c ENSGT00940000158505.n.a.d ENSGT00940000164807.G.a.b.e.a.a.b.a ENSGT00940000157622.b.g ENSGT00940000154495.b.a.a.b.a ENSGT01100000263491.a.b.a.b.a.a.b.a ENSGT00940000156045.a.c ENSGT00940000165124.c.g.b ENSGT00940000164963.c.a.d.b ENSGT00940000164685.b.g ENSGT00940000164374.B.c.b.d.a.a ENSGT01030000234592.A.b.b.b.b.c ENSGT00940000165332.A.c.b ENSGT00950000182859.A.a.a.a.f.b ##22 ENSGT00940000165798.c.b.a.a ENSGT00530000063506.A.b ENSGT00530000063555.A.a.a.j ENSGT00950000183132.C.cb ENSGT00940000155341.c ENSGT00940000155244.d.f.a ENSGT00940000153596.A ENSGT01030000234799.d ENSGT00950000183018.b.h ENSGT00940000154658.b.i.a.d ENSGT00940000157174.d.j ENSGT00940000159937.h.a ENSGT00390000013344.d ENSGT00940000162158 ENSGT00940000155007.n.a.b River trout MODERN SPECIES 22 ENSSTUG00000016426 clp1 (ENSSTUG00000016411) ENSSTUG00000016390 rtn4rl2b (ENSSTUG00000016386) ENSSTUG00000016382 SLC43A3 (ENSSTUG00000016352) smtnl1 (ENSSTUG00000016344) CTNND1 (ENSSTUG00000015997) ENSSTUG00000015978 ENSSTUG00000015953 ENSSTUG00000015930 ENSSTUG00000015923 ENSSTUG00000015918 ENSSTUG00000015914 ENSSTUG00000015909 ENSSTUG00000015066 ##22 ENSSTUG00000014855 COX18 (ENSSTUG00000014807) igfbp7 (ENSSTUG00000014797) POLR2B (ENSSTUG00000014626) rest (ENSSTUG00000014611) b4galt1l (ENSSTUG00000014605) exosc3 (ENSSTUG00000014593) ENSSTUG00000014582 nipsnap3a (ENSSTUG00000014572) ABCA1 (ENSSTUG00000005428) SLC44A1 (ENSSTUG00000004990) TBC1D2 (ENSSTUG00000004924) ELP1 (ENSSTUG00000002917) ACTL7A (ENSSTUG00000002814) ENSSTUG00000002805 Atlantic salmon MODERN SPECIES 24 ENSSSAG00000055209 ENSSSAG00000055201 ENSSSAG00000055193 rtn4rl2b (ENSSSAG00000055190) ENSSSAG00000055165 smtnl1 (ENSSSAG00000102088) ENSSSAG00000040560 ENSSSAG00000055005 ENSSSAG00000054982 ENSSSAG00000083129 ENSSSAG00000054954 ENSSSAG00000054939 ENSSSAG00000054934 ENSSSAG00000054926 ENSSSAG00000054922 ENSSSAG00000045462 ##22 ENSSSAG00000045264 ENSSSAG00000094371 ENSSSAG00000084281 ENSSSAG00000045199 igfbp7 (ENSSSAG00000103603) POLR2B (ENSSSAG00000044638) rest (ENSSSAG00000044606) b4galt1l (ENSSSAG00000108736) exosc3 (ENSSSAG00000044542) nipsnap3a (ENSSSAG00000044517) ENSSSAG00000018923 SLC44A1 (ENSSSAG00000015855) ENSSSAG00000015765 ENSSSAG00000007938 ENSSSAG00000007820 Otomorpha ANCESTRAL SPECIES 95 ENSGT00940000165724 ENSGT00940000161036.A.f ENSGT00940000170259 ENSGT00390000004945 ENSGT00390000012666 ENSGT00940000156141.A ENSGT00940000165044 ENSGT00940000153169.A.b.b.e.a ENSGT00390000001670 ENSGT00940000158926 ENSGT00950000182932.A.b.a.b ENSGT00940000155378.c.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT01100000265280 ENSGT01030000234799 ENSGT00950000183018.b ENSGT00940000154658.b.i.a ENSGT00940000157174.d ENSGT00940000177365 ENSGT00940000159937 Clupeiformes ANCESTRAL SPECIES 23 ENSGT00940000159651.c ENSGT00940000161036.A.f ENSGT00940000170259 ENSGT00940000153168.C.a.b ENSGT00390000004945 ENSGT00390000012666 ENSGT00940000156141.A ENSGT00940000165044 ENSGT00390000001670 ENSGT00940000158926 ENSGT00950000182932.A.b.a.b ENSGT00940000155378.c.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00390000003477 ENSGT00390000012901 ENSGT00940000159350 ENSGT00940000157037.a.c.a ENSGT00940000159192 ENSGT00390000009416 ENSGT00940000160595.b ENSGT00940000156835.l.a.b ENSGT00940000160449 ENSGT00940000164241 ENSGT00940000161843 ENSGT00940000162201.p ENSGT00390000010950 ENSGT00940000164838.f Denticle herring MODERN SPECIES 9 BTK (ENSDCDG00000019556) RPL36A (ENSDCDG00000019565) gla (ENSDCDG00000019568) glra4a (ENSDCDG00000019588) DIAPH2 (ENSDCDG00000019845) pcdh19 (ENSDCDG00000021116) ENSDCDG00000021118 ENSDCDG00000021120 tnmd (ENSDCDG00000021121) elf1 (ENSDCDG00000021122) gsr (ENSDCDG00000021139) ENSDCDG00000021218 DGKQ (ENSDCDG00000021230) NFKB1 (ENSDCDG00000021339) UBE2D3 (ENSDCDG00000023284) ENSDCDG00000023411 ##22 CPXM1 (ENSDCDG00000023602) lyar (ENSDCDG00000023927) TMEM128 (ENSDCDG00000023930) OTOP1 (ENSDCDG00000023933) DRD5 (ENSDCDG00000023936) SLC2A9 (ENSDCDG00000023972) WDR1 (ENSDCDG00000025046) ENSDCDG00000025050 ENSDCDG00000025051 HS3ST1 (ENSDCDG00000025054) ENSDCDG00000025061 nkx3-2 (ENSDCDG00000025066) ENSDCDG00000025068 ENSDCDG00000025075 tlr1 (ENSDCDG00000025094) Atlantic herring MODERN SPECIES 12 slc25a43 (ENSCHAG00000019183) BTK (ENSCHAG00000019204) rpl36a (ENSCHAG00000019377) gla (ENSCHAG00000019452) glra4a (ENSCHAG00000000774) DIAPH2 (ENSCHAG00000001390) ENSCHAG00000003668 pcdh19 (ENSCHAG00000003710) tnmd (ENSCHAG00000003718) elf1 (ENSCHAG00000003756) gsr (ENSCHAG00000003807) SLC39A8 (ENSCHAG00000004818) DGKQ (ENSCHAG00000004892) NFKB1 (ENSCHAG00000005322) UBE2D3 (ENSCHAG00000005527) ENSCHAG00000006390 ##22 CPXM1 (ENSCHAG00000009802) lyar (ENSCHAG00000009905) TMEM128 (ENSCHAG00000009912) OTOP1 (ENSCHAG00000009931) DRD5 (ENSCHAG00000009936) SLC2A9 (ENSCHAG00000009941) ENSCHAG00000009972 ENSCHAG00000009995 SLC25A53 (ENSCHAG00000010151) ENSCHAG00000010181 ENSCHAG00000010373 ENSCHAG00000010394 ENSCHAG00000010434 rnf20 (ENSCHAG00000010471) ENSCHAG00000011572 Otophysi ANCESTRAL SPECIES 29 ENSGT00950000183137.a.k ENSGT00390000007726.a.a ENSGT00940000158796 ENSGT00940000157919.a.a ENSGT00390000009747 ENSGT00940000165044 ENSGT00940000153169.A.b.b.e.a ENSGT00390000001670 ENSGT00940000158926 ENSGT00950000182932.A.b.a.b ENSGT00940000155378.c.a ENSGT00940000164014.a.a ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00390000013264 ENSGT00940000159397 ENSGT00940000154630.b ENSGT00390000017143 ENSGT00950000182924.B.a.a ENSGT00940000162696.c.a ENSGT00940000159450 Cyprinoidei ANCESTRAL SPECIES 31 ENSGT00940000165849 ENSGT00940000161160 ENSGT00940000158553.b.b ENSGT00940000157197 ENSGT00910000144291 ENSGT00940000160186 ENSGT00940000159626 ENSGT00950000182815.a.a.a.a.b ENSGT00940000160064.a.b ENSGT00940000159868.a ENSGT00390000000973.a.a ENSGT00390000014635 ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00950000182859.A.a.b.b.d.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b.b Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 179 ENSGT00940000157197.d ENSGT00910000144291 ENSGT00940000160186.c.a.a ENSGT00940000159626.j ENSGT00940000160186.c.a.b ENSGT00940000159626.i.a ENSGT00950000182815.a.a.a.a.b.b ENSGT00940000160064.a.b.c ENSGT00940000155980.C.e ENSGT00940000156333.b ENSGT00390000000973.a.a.h ENSGT00390000014635.a ENSGT00940000158926.m.a ENSGT00940000159492.d ENSGT00940000158625.c.b ENSGT00950000182859.A.a.a.a.g ##22 ENSGT00940000156141.B.b Cyprininae_a ANCESTRAL SPECIES 179 ENSGT00940000157197.d ENSGT00910000144291 ENSGT00940000160186.c.a.a ENSGT00940000159626.j ENSGT00940000160186.c.a.b ENSGT00940000159626.i.a ENSGT00950000182815.a.a.a.a.b.b ENSGT00940000160064.a.b.c ENSGT00940000155980.C.e ENSGT00940000156333.b ENSGT00390000000973.a.a.h ENSGT00390000014635.a ENSGT00940000158926.m.a ENSGT00940000159492.d ENSGT00940000158625.c.b ENSGT00950000182859.A.a.a.a.g ##22 ENSGT00940000156141.B.b Common carp reference MODERN SPECIES 20 rnf44 (ENSCCRG00000057971) faf2 (ENSCCRG00000015650) pdlim7 (ENSCCRG00000015678) ENSCCRG00000069758 ENSCCRG00000002735 ENSCCRG00000065547 ENSCCRG00000075332 atoh1b (ENSCCRG00000072856) ENSCCRG00000041123 ENSCCRG00000041117 ENSCCRG00000064903 ENSCCRG00000041105 ENSCCRG00000041099 ENSCCRG00000000186 ENSCCRG00000015021 ENSCCRG00000079109 ##22 ENSCCRG00000009564 POLR2B (ENSCCRG00000009571) noa1 (ENSCCRG00000067936) rest (ENSCCRG00000007987) b4galt1l (ENSCCRG00000007980) ENSCCRG00000009649 tcerg1a (ENSCCRG00000056364) ENSCCRG00000068047 PPP2R2B (ENSCCRG00000009203) ##21 ENSCCRG00000001899 rpl26 (ENSCCRG00000059195) ENSCCRG00000074127 SLC49A3 (ENSCCRG00000001444) ENSCCRG00000072300 CPLX1 (ENSCCRG00000068863) Golden-line barbel MODERN SPECIES 207 faf2 (ENSSGRG00000030601) higd2a (ENSSGRG00000030594) CLTB (ENSSGRG00000030592) pdlim7 (ENSSGRG00000030577) unc5a (ENSSGRG00000030573) atoh1b (ENSSGRG00000030572) ENSSGRG00000030570 DDX41 (ENSSGRG00000030543) ENSSGRG00000030542 abhd18 (ENSSGRG00000030537) ENSSGRG00000030536 DGKQ (ENSSGRG00000030474) NFKB1 (ENSSGRG00000030100) ube2d2l (ENSSGRG00000029990) ENSSGRG00000029987 ENSSGRG00000029986 ##22 Goldfish MODERN SPECIES 32 ENSCARG00000066601 rnf44 (ENSCARG00000066616) faf2 (ENSCARG00000066649) higd2a (ENSCARG00000066684) CLTB (ENSCARG00000066692) pdlim7 (ENSCARG00000066709) unc5a (ENSCARG00000066769) atoh1b (ENSCARG00000066964) ENSCARG00000066977 DDX41 (ENSCARG00000067014) FAM193B (ENSCARG00000067131) abhd18 (ENSCARG00000067145) SLC39A8 (ENSCARG00000067239) DGKQ (ENSCARG00000067269) ENSCARG00000067505 ENSCARG00000068746 ##22 ENSCARG00000068760 b4galt1l (ENSCARG00000068775) ENSCARG00000068782 COX18 (ENSCARG00000068789) igfbp7 (ENSCARG00000068800) POLR2B (ENSCARG00000068826) rest (ENSCARG00000068952) b4galt1l (ENSCARG00000068995) tcerg1a (ENSCARG00000069053) GPR151 (ENSCARG00000069301) PPP2R2B (ENSCARG00000069310) ##21 ENSCARG00000069338 IL17B (ENSCARG00000069341) rpl26 (ENSCARG00000069348) atp6v0e1 (ENSCARG00000069354) Cyprininae ANCESTRAL SPECIES 39 ENSGT00990000211559 ENSGT00940000160186.c.b ENSGT00940000159626.i.b ENSGT00950000182815.a.a.a.a.b.a ENSGT00940000160064.a.b.d ENSGT00940000155980.C.f ENSGT00940000156333.a ENSGT00390000000973.a.a.g ENSGT00390000014635.b ENSGT00940000158926.m.b ENSGT00940000159492.c ENSGT00940000158625.d ENSGT00940000153169.A.b.b.f.b ENSGT00940000158625.c.a ENSGT00940000153169.A.b.b.f.a ENSGT00950000182859.A.a.a.a.h ##22 ENSGT00940000156141.B.a ENSGT00530000063506.A ENSGT00530000063555.A.a.a.l ENSGT00530000063555.A.a.a.k ENSGT00950000183132.C.r ENSGT00390000001695.h ENSGT00940000155341.e ENSGT00940000155244.d.n.a ENSGT00940000153596.A.d ENSGT00940000157770.i.a ENSGT01030000234518.A.a.b.b ENSGT00950000182864.a.b.b.a.b.a.b.e.a ##21 ENSGT00940000160854.a ENSGT00390000014165.e.b ENSGT00940000156866 Goldfish MODERN SPECIES 5 rpl26 (ENSCARG00000022708) IL17B (ENSCARG00000022715) PPP2R2B (ENSCARG00000022730) ##21 GPR151 (ENSCARG00000022802) tcerg1a (ENSCARG00000022823) ENSCARG00000022982 EXOSC3 (ENSCARG00000022985) b4galt1l (ENSCARG00000022993) rest (ENSCARG00000049908) noa1 (ENSCARG00000049915) POLR2B (ENSCARG00000049962) igfbp7 (ENSCARG00000050160) CPXM1 (ENSCARG00000050286) NFKB1 (ENSCARG00000050845) ube2d2l (ENSCARG00000052084) ENSCARG00000052159 ##22 SLC35F1 (ENSCARG00000053341) si:dkeyp-114g9.1 (ENSCARG00000053348) CEP85L (ENSCARG00000053378) PLN (ENSCARG00000053386) FAM184A (ENSCARG00000053412) ENSCARG00000053735 ENSCARG00000053770 ENSCARG00000053782 sncb (ENSCARG00000053812) ENSCARG00000053833 ctnna1 (ENSCARG00000053916) LRRTM2 (ENSCARG00000054595) ENSCARG00000054606 tspan17 (ENSCARG00000054628) SYNPO (ENSCARG00000054702) Cyprininae_a ANCESTRAL SPECIES 72 ENSGT00940000158553.b.b.b ENSGT00940000157197.c ENSGT00990000211559 ENSGT00940000159626.i.b ENSGT00950000182815.a.a.a.a.b.a ENSGT00940000160064.a.b.d ENSGT00940000155980.C.f ENSGT00940000159868.a ENSGT00940000156333.a ENSGT00390000000973.a.a.g ENSGT00390000014635.b ENSGT00940000158926.m.b ENSGT00940000159492.c ENSGT00940000158625.d ENSGT00940000153169.A.b.b.f.a ENSGT00950000182859.A.a.a.a.h ##22 ENSGT00940000156141.B.a ENSGT00530000063506.A ENSGT00530000063555.A.a.a.l ENSGT00530000063555.A.a.a.k ENSGT00950000183132.C.r ENSGT00390000001695.h ENSGT00940000155341.e ENSGT00940000155244.d.n.a ENSGT00940000153596.A.d ENSGT00940000157770.i.a ENSGT01030000234518.A.a.b.b ENSGT00950000182864.a.b.b.a.b.a.b.e.a ##21 ENSGT00940000160854.a ENSGT00390000014165.e.b ENSGT00940000156866 Common carp reference MODERN SPECIES 35 ENSCCRG00000059181 rnf44 (ENSCCRG00000015646) faf2 (ENSCCRG00000034845) ENSCCRG00000062001 ENSCCRG00000015663 pdlim7 (ENSCCRG00000054933) unc5a (ENSCCRG00000015755) ENSCCRG00000064347 ENSCCRG00000080870 ENSCCRG00000067164 ENSCCRG00000002139 ENSCCRG00000002152 ENSCCRG00000028287 ENSCCRG00000081355 ENSCCRG00000007116 ENSCCRG00000017912 ##22 ENSCCRG00000009494 ENSCCRG00000009500 igfbp7 (ENSCCRG00000009505) POLR2B (ENSCCRG00000009512) noa1 (ENSCCRG00000009546) rest (ENSCCRG00000060851) b4galt1l (ENSCCRG00000056290) ENSCCRG00000005389 tcerg1a (ENSCCRG00000005291) ENSCCRG00000080723 PPP2R2B (ENSCCRG00000001952) ##21 ENSCCRG00000069401 rpl26 (ENSCCRG00000079973) atp6v0e1 (ENSCCRG00000001909) ENSCCRG00000001903 Golden-line barbel MODERN SPECIES 88 atoh1b (ENSSGRG00000035483) ENSSGRG00000035484 DDX41 (ENSSGRG00000035487) ENSSGRG00000035502 abhd18 (ENSSGRG00000035503) ENSSGRG00000035505 DGKQ (ENSSGRG00000035506) NFKB1 (ENSSGRG00000035540) ube2d2l (ENSSGRG00000036800) ENSSGRG00000037428 ##22 CPXM1 (ENSSGRG00000037436) igfbp7 (ENSSGRG00000037480) POLR2B (ENSSGRG00000037481) noa1 (ENSSGRG00000037520) rest (ENSSGRG00000037521) b4galt1l (ENSSGRG00000037522) EXOSC3 (ENSSGRG00000037524) tcerg1a (ENSSGRG00000037528) GPR151 (ENSSGRG00000037926) PPP2R2B (ENSSGRG00000037929) ##21 IL17B (ENSSGRG00000038900) ENSSGRG00000038901 rpl26 (ENSSGRG00000038902) ENSSGRG00000038911 TSTD2 (ENSSGRG00000038915) Characiphysae ANCESTRAL SPECIES 13 ENSGT00940000160193 ENSGT00940000157266.a ENSGT01100000263497.C ENSGT00950000183137.a.k ENSGT00390000007726.a.a ENSGT00940000158796 ENSGT00390000009747 ENSGT00940000165044 ENSGT00940000153169.A.b.b.e.a ENSGT00390000001670 ENSGT00940000158926 ENSGT00950000182932.A.b.a.b ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 Channel catfish MODERN SPECIES 11 Higd2a (ENSIPUG00000016523) cltb (ENSIPUG00000016487) pdlim7 (ENSIPUG00000016370) unc5a (ENSIPUG00000016301) ENSIPUG00000016266 atoh1b (ENSIPUG00000016247) Dok3 (ENSIPUG00000016236) ddx41 (ENSIPUG00000016171) fam193b (ENSIPUG00000016156) abhd18 (ENSIPUG00000016126) slc39a8 (ENSIPUG00000016111) dgkq (ENSIPUG00000016054) NFKB1 (ENSIPUG00000016031) ube2d2 (ENSIPUG00000015982) ENSIPUG00000015964 ENSIPUG00000015903 ##22 CPXM1 (ENSIPUG00000015727) COX18 (ENSIPUG00000015703) Igfbp7 (ENSIPUG00000015686) POLR2B (ENSIPUG00000015595) noa1 (ENSIPUG00000015583) eef2kmt (ENSIPUG00000015572) Alg1 (ENSIPUG00000015526) c2h16orf89 (ENSIPUG00000015508) flr (ENSIPUG00000015452) ENSIPUG00000015442 gsg1l (ENSIPUG00000015429) fbxl16 (ENSIPUG00000015414) sept12 (ENSIPUG00000015361) ENSIPUG00000015334 ENSIPUG00000015325 Characiphysae_b ANCESTRAL SPECIES 10 ENSGT00940000160193 ENSGT00940000157266.a ENSGT01100000263497.C ENSGT00950000183137.a.k ENSGT00390000007726.a.a ENSGT00940000158796 ENSGT00390000009747 ENSGT00940000165044 ENSGT00940000153169.A.b.b.e.a ENSGT00390000001670 ENSGT00940000158926 ENSGT00950000182932.A.b.a.b ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00390000013264 ENSGT00940000159397 ENSGT00390000017143 ENSGT00950000182924.B.a.a ENSGT00940000162696.c.a ENSGT00940000159450 ENSGT00940000157994 ENSGT00390000010950 ENSGT00940000162201.p Electric eel MODERN SPECIES 606 ENSEEEG00000015958 ##22 CPXM1 (ENSEEEG00000015949) COX18 (ENSEEEG00000015947) igfbp7 (ENSEEEG00000015944) polr2b (ENSEEEG00000015928) noa1 (ENSEEEG00000015923) rest (ENSEEEG00000015922) b4galt1l (ENSEEEG00000015921) Characoidei ANCESTRAL SPECIES 5 ENSGT00940000160193 ENSGT00940000157266.a ENSGT01100000263497.C ENSGT00950000183137.a.k ENSGT00390000007726.a.a ENSGT00940000158796 ENSGT00390000009747 ENSGT00940000165044 ENSGT00940000153169.A.b.b.e.a ENSGT00390000001670 ENSGT00940000158926 ENSGT00950000182932.A.b.a.b ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00390000013264 ENSGT00940000159397 ENSGT00390000017143 ENSGT00950000182924.B.a.a ENSGT00940000162696.c.a ENSGT00940000159450 ENSGT00940000157994 ENSGT00390000010950 ENSGT00940000162201.p Red-bellied piranha MODERN SPECIES 118 rnf44 (ENSPNAG00000012696) faf2 (ENSPNAG00000012685) higd2a (ENSPNAG00000002340) CLTB (ENSPNAG00000002332) pdlim7 (ENSPNAG00000012610) unc5a (ENSPNAG00000002292) atoh1b (ENSPNAG00000002261) ENSPNAG00000005483 DDX41 (ENSPNAG00000002248) FAM193B (ENSPNAG00000012380) abhd18 (ENSPNAG00000012361) SLC39A8 (ENSPNAG00000012306) DGKQ (ENSPNAG00000002185) NFKB1 (ENSPNAG00000002169) ENSPNAG00000012197 ENSPNAG00000002121 ##22 CPXM1 (ENSPNAG00000002105) COX18 (ENSPNAG00000002093) igfbp7 (ENSPNAG00000012081) polr2b (ENSPNAG00000012064) noa1 (ENSPNAG00000012000) rest (ENSPNAG00000011987) b4galt1l (ENSPNAG00000011957) Mexicana tetra MODERN SPECIES 11 atoh1b (ENSAMXG00000037490) ENSAMXG00000043080 unc5a (ENSAMXG00000003028) pdlim7 (ENSAMXG00000003081) CLTB (ENSAMXG00000039610) higd2a (ENSAMXG00000003114) faf2 (ENSAMXG00000003126) rnf44 (ENSAMXG00000003157) ENSAMXG00000003182 smim13 (ENSAMXG00000044025) abhd18 (ENSAMXG00000003231) SLC39A8 (ENSAMXG00000003260) DGKQ (ENSAMXG00000003289) ENSAMXG00000003341 ube2d2l (ENSAMXG00000042000) EBF4 (ENSAMXG00000003402) ##22 ENSAMXG00000032159 CPXM1 (ENSAMXG00000031678) COX18 (ENSAMXG00000004071) igfbp7 (ENSAMXG00000032537) POLR2B (ENSAMXG00000004040) noa1 (ENSAMXG00000004024) rest (ENSAMXG00000034467) b4galt1l (ENSAMXG00000040507) SRP72 (ENSAMXG00000004011) arl9 (ENSAMXG00000036996) hopx (ENSAMXG00000035297) SEC24B (ENSAMXG00000003992) ENSAMXG00000025565 SLC16A2 (ENSAMXG00000003977) ENSAMXG00000003967 Osteoglossiformes ANCESTRAL SPECIES 432 ENSGT00940000158625.a.b ENSGT00940000153169.A.b.b.e.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00950000182932.A.b.a.b.qb ENSGT00940000155378.c.b ENSGT00390000002231 ENSGT00940000158971.`b.a ENSGT00940000161036.A.e Asian bonytongue MODERN SPECIES 20 ENSSFOG00015004434 ENSSFOG00015030317 ENSSFOG00015027908 atp8a1 (ENSSFOG00015006132) shisa3 (ENSSFOG00015006116) BEND4 (ENSSFOG00015029374) slc30a9 (ENSSFOG00015006091) gsr (ENSSFOG00015005713) wdr32 (ENSSFOG00015005643) DGKQ (ENSSFOG00015005508) SLC39A8 (ENSSFOG00015005498) ENSSFOG00015030210 ENSSFOG00015008358 si:ch211-165i18.2 (ENSSFOG00015005448) ENSSFOG00015005427 ENSSFOG00015005383 ##22 CPXM1 (ENSSFOG00015005306) ENSSFOG00015028984 dctn1a (ENSSFOG00015005234) ADAM33 (ENSSFOG00015005203) ENSSFOG00015005186 nanos1 (ENSSFOG00015031529) ENSSFOG00015005135 pcgf1 (ENSSFOG00015005089) fgf24 (ENSSFOG00015005073) npm1b (ENSSFOG00015005064) tlx2 (ENSSFOG00015005040) kazald2 (ENSSFOG00015024509) mrps26 (ENSSFOG00015025476) aup1 (ENSSFOG00015004967) ENSSFOG00015028723 P. kingsleyae DUPLICATION P. kingsleyae MODERN SPECIES 264 ENSPKIG00000010969 ATP8A1 (ENSPKIG00000011029) shisa3 (ENSPKIG00000011175) BEND4 (ENSPKIG00000011193) slc30a9 (ENSPKIG00000011211) DGKQ (ENSPKIG00000011257) SLC39A8 (ENSPKIG00000011365) ENSPKIG00000011417 UBE2D3 (ENSPKIG00000011458) ENSPKIG00000011510 ##22 CPXM1 (ENSPKIG00000011606) ENSPKIG00000011635 dctn1a (ENSPKIG00000011686) fam113 (ENSPKIG00000011761) ADAM33 (ENSPKIG00000011778) ENSPKIG00000011819 P. kingsleyae MODERN SPECIES 149 nat14 (ENSPKIG00000001489) ENSPKIG00000001476 ENSPKIG00000001446 rasip1 (ENSPKIG00000001398) cox6b2 (ENSPKIG00000001372) GBP1 (ENSPKIG00000001343) ENSPKIG00000001311 has1 (ENSPKIG00000001273) ENSPKIG00000001253 ENSPKIG00000001231 ENSPKIG00000001218 TENM3 (ENSPKIG00000001176) ENSPKIG00000001157 vegfc (ENSPKIG00000001136) spcs3 (ENSPKIG00000001115) ENSPKIG00000001073 ##22 ENSPKIG00000001058 DCTN1 (ENSPKIG00000000855) ENSPKIG00000000767 ENSPKIG00000000758 CPXM1 (ENSPKIG00000000727) si:dkey-33c12.12 (ENSPKIG00000000701) si:dkey-33c12.3 (ENSPKIG00000000695) ENSPKIG00000000681 fgf24 (ENSPKIG00000000666) PCGF1 (ENSPKIG00000000641) lbx2 (ENSPKIG00000000628) nanos1 (ENSPKIG00000000617) Sarcopterygii ANCESTRAL SPECIES 404 ENSGT01030000234518.A.a.a ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00390000002231 ENSGT00940000158971 ENSGT00940000153123.B ENSGT00940000179269 Tetrapoda ANCESTRAL SPECIES 3 ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT01030000234518.A.a.a ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00940000160491 ENSGT00940000157346 ENSGT00390000003692 ENSGT00940000165596 ENSGT00940000154894 ENSGT01010000222287.B.a.a.b ENSGT00730000112302 ENSGT00390000017193 ENSGT00940000154078.b ENSGT01030000234607.A.a.b.b ENSGT00510000049555 ENSGT00390000004511.c.a ENSGT00390000004511.d Anura ANCESTRAL SPECIES 259 ENSGT01030000234518.A.a.a ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.b.rb.a ENSGT00950000182932.A.b.a.b.rb.b ENSGT00950000182932.A.b.a.a.b.k ENSGT00950000182932.A.b.a.a.b.l ENSGT00390000002231 ENSGT00940000158971 Frog MODERN SPECIES exoc6b (ENSXETG00000021542) ENSXETG00000048433 cyp26b1 (ENSXETG00000046186) ENSXETG00000048922 DYSF (ENSXETG00000015757) ENSXETG00000045245 znf638 (ENSXETG00000015780) cdc25b (ENSXETG00000012740) ENSXETG00000012742 spef1 (ENSXETG00000032089) c20orf27 (ENSXETG00000047185) hspa12b (ENSXETG00000012748) lyrm2 (ENSXETG00000012750) XB22166511 [provisional:gpr151] (ENSXETG00000012752) rnf145l (ENSXETG00000012753) coe3l (ENSXETG00000030294) ##22 cpxm1 (ENSXETG00000012756) nat8.1 (ENSXETG00000012759) nat8.2 (ENSXETG00000026706) nat8.6 (ENSXETG00000036460) ENSXETG00000031469 nat8.5 (ENSXETG00000047719) nat8.7 (ENSXETG00000026704) pced1a (ENSXETG00000012763) adam33 (ENSXETG00000011758) art5 (ENSXETG00000011761) ENSXETG00000043141 ENSXETG00000033287 mid1l2 (ENSXETG00000011762) smyd5 (ENSXETG00000043500) ENSXETG00000042875 Leishan spiny toad MODERN SPECIES ENSLLEG00000000964 ENSLLEG00000000958 ENSLLEG00000000939 ENSLLEG00000000921 ENSLLEG00000000909 ENSLLEG00000000895 ENSLLEG00000000861 ENSLLEG00000000850 DCTN1 (ENSLLEG00000000576) ENSLLEG00000000515 ENSLLEG00000000497 ENSLLEG00000000478 ENSLLEG00000000469 EBF4 (ENSLLEG00000000245) ##22 ENSLLEG00000000191 ENSLLEG00000000185 CPXM1 (ENSLLEG00000000152) ENSLLEG00000000139 ENSLLEG00000000126 ENSLLEG00000000123 ENSLLEG00000000113 ENSLLEG00000000106 ENSLLEG00000000099 ENSLLEG00000000094 ENSLLEG00000017130 ENSLLEG00000017102 ENSLLEG00000017065 ENSLLEG00000017037 ENSLLEG00000016962 Amniota ANCESTRAL SPECIES 2 ENSGT00940000156187 ENSGT00940000153322.A ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00940000161413 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00940000179269 ENSGT00940000153123.B ENSGT00940000158971 ENSGT00940000160491 ENSGT00940000157346 ENSGT00390000003692 ENSGT00940000165596 ENSGT00940000154894 ENSGT01010000222287.B.a.a.b ENSGT00940000169304 ENSGT00940000154078.b ENSGT01030000234607.A.a.b.b ENSGT00510000049555 Mammalia ANCESTRAL SPECIES 79 ENSGT00940000159651 ENSGT00940000162295 ENSGT00940000161036.A ENSGT00390000009871 ENSGT00390000001440 ENSGT00390000017452 ENSGT00950000183109.d ENSGT00390000001754 ENSGT00940000158491 ENSGT00390000014530 ENSGT00390000014979 ENSGT00940000163763 ENSGT00940000155378.d ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00940000158971 ENSGT00940000160491 ENSGT00940000157346 ENSGT00390000003692 ENSGT00940000165600 ENSGT00940000168737 ENSGT00940000154894 ENSGT00390000017193 ENSGT00940000154078.b ENSGT01030000234607.A.a.b.b ENSGT00510000049555 ENSGT00390000004511.d ENSGT00390000008453 Theria ANCESTRAL SPECIES 49 ENSGT00940000159651 ENSGT00940000162295 ENSGT00940000161036.A ENSGT00390000009871 ENSGT00390000001440 ENSGT00390000017452 ENSGT00950000183109.d ENSGT00390000001754 ENSGT00940000158491 ENSGT00390000014530 ENSGT00390000014979 ENSGT00940000163763 ENSGT00940000155378.d ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000004511.d.a.b ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Marsupialia ANCESTRAL SPECIES 7 ENSGT00940000162295 ENSGT00940000161036.A ENSGT00390000009871 ENSGT00390000001440 ENSGT00390000017452 ENSGT00950000183109.d ENSGT00390000001754 ENSGT00940000158491 ENSGT00390000014530 ENSGT00390000014979 ENSGT00940000163763 ENSGT00940000155378.d ENSGT00940000153534.B ENSGT00950000182989.D.a.b.i.a ENSGT00950000182989.D.a.b.i.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b.a ENSGT00390000004511.d.a.b.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Marsupialia_b ANCESTRAL SPECIES 8 ENSGT00940000159651 ENSGT00940000162295 ENSGT00940000161036.A ENSGT00390000009871 ENSGT00390000001440 ENSGT00390000017452 ENSGT00950000183109.d ENSGT00390000001754 ENSGT00940000158491 ENSGT00390000014530 ENSGT00390000014979 ENSGT00940000163763 ENSGT00940000155378.d ENSGT00940000153534.B ENSGT00950000182989.D.a.b.i.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00950000182932.A.b.a.b.ub ENSGT00940000156141.C ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b.a ENSGT00390000004511.d.a.b.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Diprotodontia ANCESTRAL SPECIES 10 ENSGT00940000159651 ENSGT00940000162295 ENSGT00940000161036.A ENSGT00390000009871 ENSGT00390000001440 ENSGT00390000017452 ENSGT00950000183109.d ENSGT00390000001754 ENSGT00940000158491 ENSGT00390000014530 ENSGT00390000014979 ENSGT00940000163763 ENSGT00940000155378.d ENSGT00940000153534.B ENSGT00950000182989.D.a.b.i.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00950000182932.A.b.a.b.ub ENSGT00940000156141.C ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b.a ENSGT00390000004511.d.a.b.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Diprotodontia_a ANCESTRAL SPECIES 12 ENSGT00940000159651 ENSGT00940000162295 ENSGT00940000161036.A ENSGT00390000009871 ENSGT00390000001440 ENSGT00390000017452 ENSGT00950000183109.d ENSGT00390000001754 ENSGT00940000158491 ENSGT00390000014530 ENSGT00390000014979 ENSGT00940000163763 ENSGT00940000155378.d ENSGT00940000153534.B ENSGT00950000182989.D.a.b.i.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00950000182932.A.b.a.b.ub ENSGT00940000156141.C ENSGT00390000005090 ENSGT00390000002231.c.d ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b.a ENSGT00390000004511.d.a.b.a ENSGT00390000004511.d.a.b.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Common wonbat MODERN SPECIES 1054 PCGF1 (ENSVURG00010020226) LBX2 (ENSVURG00010020221) ENSVURG00010020212 CCDC142 (ENSVURG00010020202) MRPL53 (ENSVURG00010020194) MOGS (ENSVURG00010020190) WBP1 (ENSVURG00010020185) INO80B (ENSVURG00010020179) RTKN (ENSVURG00010020167) WDR54 (ENSVURG00010020158) ENSVURG00010020141 ENSVURG00010020131 DCTN1 (ENSVURG00010020041) NOP56 (ENSVURG00010020029) ENSVURG00010020027 EBF4 (ENSVURG00010020014) ##22 ENSVURG00010020009 CPXM1 (ENSVURG00010019996) TMEM239 (ENSVURG00010019985) ENSVURG00010019980 VPS16 (ENSVURG00010019951) PTPRA (ENSVURG00010019910) ENSVURG00010019894 MRPS26 (ENSVURG00010019885) ENSVURG00010019871 ENSVURG00010019865 ENSVURG00010019858 ENSVURG00010019843 UBOX5 (ENSVURG00010019831) LZTS3 (ENSVURG00010019825) DDRGK1 (ENSVURG00010019812) koala MODERN SPECIES 108 PCGF1 (ENSPCIG00000006054) LBX2 (ENSPCIG00000036023) ENSPCIG00000006050 ENSPCIG00000006049 MRPL53 (ENSPCIG00000036051) MOGS (ENSPCIG00000006047) WBP1 (ENSPCIG00000006046) INO80B (ENSPCIG00000035598) RTKN (ENSPCIG00000006038) WDR54 (ENSPCIG00000006035) ENSPCIG00000034734 ENSPCIG00000002976 DCTN1 (ENSPCIG00000006012) NOP56 (ENSPCIG00000005997) ENSPCIG00000005985 EBF4 (ENSPCIG00000000836) ##22 ENSPCIG00000000694 CPXM1 (ENSPCIG00000000683) TMEM239 (ENSPCIG00000000664) ENSPCIG00000000648 VPS16 (ENSPCIG00000000611) PTPRA (ENSPCIG00000000563) ENSPCIG00000000532 MRPS26 (ENSPCIG00000000516) ENSPCIG00000036942 ENSPCIG00000000490 ENSPCIG00000033226 ENSPCIG00000000402 ENSPCIG00000000333 UBOX5 (ENSPCIG00000000303) FASTKD5 (ENSPCIG00000000271) Wallaby MODERN SPECIES 586 EBF4 (ENSMEUG00000015344) ##22 Tasmanian devil MODERN SPECIES 5 HTRA2 (ENSSHAG00000027709) AUP1 (ENSSHAG00000016825) DQX1 (ENSSHAG00000016833) PCGF1 (ENSSHAG00000022147) TLX2 (ENSSHAG00000021321) LBX2 (ENSSHAG00000023088) ENSSHAG00000020486 MOGS (ENSSHAG00000027948) RTKN (ENSSHAG00000016985) WDR54 (ENSSHAG00000017008) ENSSHAG00000017016 ENSSHAG00000000494 ENSSHAG00000017096 ENSSHAG00000017162 ENSSHAG00000017173 EBF4 (ENSSHAG00000017239) ##22 ENSSHAG00000025855 CPXM1 (ENSSHAG00000017413) TMEM239 (ENSSHAG00000016739) PCED1A (ENSSHAG00000004542) VPS16 (ENSSHAG00000003874) PTPRA (ENSSHAG00000002546) ENSSHAG00000001708 ENSSHAG00000029981 FASTKD5 (ENSSHAG00000002856) LZTS3 (ENSSHAG00000003393) DDRGK1 (ENSSHAG00000003893) ITPA (ENSSHAG00000022102) SLC4A11 (ENSSHAG00000004464) ENSSHAG00000005305 ENSSHAG00000031585 Opossum MODERN SPECIES 4 PCGF1 (ENSMODG00000004920) LBX2 (ENSMODG00000004927) CCDC142 (ENSMODG00000004951) MOGS (ENSMODG00000004961) ENSMODG00000036790 WBP1 (ENSMODG00000004968) INO80B (ENSMODG00000004975) RTKN (ENSMODG00000004982) WDR54 (ENSMODG00000004993) ENSMODG00000004997 ENSMODG00000005013 DCTN1 (ENSMODG00000005141) ENSMODG00000023604 NOP56 (ENSMODG00000005184) IDH3B (ENSMODG00000005208) EBF4 (ENSMODG00000005256) ##22 CPXM1 (ENSMODG00000005298) TMEM239 (ENSMODG00000024670) VPS16 (ENSMODG00000005349) PTPRA (ENSMODG00000005400) MRPS26 (ENSMODG00000005409) ENSMODG00000005441 ENSMODG00000005416 UBOX5 (ENSMODG00000005454) FASTKD5 (ENSMODG00000042277) LZTS3 (ENSMODG00000005461) DDRGK1 (ENSMODG00000036979) ITPA (ENSMODG00000005474) SLC4A11 (ENSMODG00000029249) ENSMODG00000005523 TMEM175 (ENSMODG00000005555) Eutheria ANCESTRAL SPECIES 11 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00940000171162 ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000004511.d.a.b ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Boreoeutheria ANCESTRAL SPECIES 17 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Laurasiatheria ANCESTRAL SPECIES 17 ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Eulipotyphla ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a ##22 Hedgehog MODERN SPECIES 115 EBF4 (ENSEEUG00000006485) ##22 Laurasiatheria_a ANCESTRAL SPECIES 18 ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Artiodactyla ANCESTRAL SPECIES 18 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Suina ANCESTRAL SPECIES 9 ENSGT00490000044517 ENSGT00940000161638 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Chacoan peccary MODERN SPECIES 801 SDCBP2 (ENSCWAG00000010111) ENSCWAG00000010156 NSFL1C (ENSCWAG00000010255) SIRPB2 (ENSCWAG00000010375) ENSCWAG00000010401 ENSCWAG00000010418 ENSCWAG00000010452 PDYN (ENSCWAG00000010609) STK35 (ENSCWAG00000010634) TGM3 (ENSCWAG00000010664) TGM6 (ENSCWAG00000010767) SNRPB (ENSCWAG00000010961) TMC2 (ENSCWAG00000011005) NOP56 (ENSCWAG00000011165) IDH3B (ENSCWAG00000011352) EBF4 (ENSCWAG00000011507) ##22 CPXM1 (ENSCWAG00000011935) C20orf141 (ENSCWAG00000011970) TMEM239 (ENSCWAG00000012015) PCED1A (ENSCWAG00000012131) VPS16 (ENSCWAG00000012219) PTPRA (ENSCWAG00000012764) GNRH2 (ENSCWAG00000012966) MRPS26 (ENSCWAG00000013106) ENSCWAG00000013142 AVP (ENSCWAG00000013171) UBOX5 (ENSCWAG00000013211) LZTS3 (ENSCWAG00000013258) DDRGK1 (ENSCWAG00000013305) ITPA (ENSCWAG00000013354) SLC4A11 (ENSCWAG00000013525) Pig MODERN SPECIES 8 NSFL1C (ENSSSCG00000007187) SIRPB2 (ENSSSCG00000007185) ENSSSCG00000063284 ENSSSCG00000007186 ENSSSCG00000007181 ENSSSCG00000027665 ENSSSCG00000028461 PDYN (ENSSSCG00000037684) STK35 (ENSSSCG00000007179) TGM3 (ENSSSCG00000026043) TGM6 (ENSSSCG00000034528) SNRPB (ENSSSCG00000040857) TMC2 (ENSSSCG00000007172) NOP56 (ENSSSCG00000027676) IDH3B (ENSSSCG00000007173) EBF4 (ENSSSCG00000007171) ##22 CPXM1 (ENSSSCG00000007170) C20orf141 (ENSSSCG00000040428) TMEM239 (ENSSSCG00000007169) PCED1A (ENSSSCG00000007168) VPS16 (ENSSSCG00000007167) PTPRA (ENSSSCG00000007166) GNRH2 (ENSSSCG00000043185) MRPS26 (ENSSSCG00000007165) OXT (ENSSSCG00000007164) AVP (ENSSSCG00000007163) UBOX5 (ENSSSCG00000007162) FASTKD5 (ENSSSCG00000045134) LZTS3 (ENSSSCG00000007161) DDRGK1 (ENSSSCG00000007160) ITPA (ENSSSCG00000035995) Artiodactyla_a ANCESTRAL SPECIES 16 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Camelidae ANCESTRAL SPECIES 49 ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 ENSGT00390000003692 ENSGT00940000157346 Arabian camel MODERN SPECIES 10 NSFL1C (ENSCDRG00005012951) SIRPB2 (ENSCDRG00005012904) ENSCDRG00005012176 ENSCDRG00005012140 ENSCDRG00005011991 ENSCDRG00005011841 ENSCDRG00005011793 PDYN (ENSCDRG00005011753) STK35 (ENSCDRG00005011709) TGM3 (ENSCDRG00005011590) TGM6 (ENSCDRG00005011349) SNRPB (ENSCDRG00005011238) TMC2 (ENSCDRG00005011052) NOP56 (ENSCDRG00005010859) IDH3B (ENSCDRG00005010680) EBF4 (ENSCDRG00005010379) ##22 CPXM1 (ENSCDRG00005010145) C20orf141 (ENSCDRG00005010114) TMEM239 (ENSCDRG00005010100) PCED1A (ENSCDRG00005010022) VPS16 (ENSCDRG00005009793) PTPRA (ENSCDRG00005009357) ENSCDRG00005009183 MRPS26 (ENSCDRG00005009132) UBOX5 (ENSCDRG00005008999) LZTS3 (ENSCDRG00005008882) DDRGK1 (ENSCDRG00005008807) ITPA (ENSCDRG00005012985) SLC4A11 (ENSCDRG00005012388) DNAAF9 (ENSCDRG00005012051) ATRN (ENSCDRG00005011671) Artiodactyla_b ANCESTRAL SPECIES 17 ENSGT00940000161179 ENSGT00940000153311.a.b.a.i.b ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Cetacea ANCESTRAL SPECIES 3 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a.i.b ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Odontoceti ANCESTRAL SPECIES 3 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a.i.b ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.a.a.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Odontoceti_a ANCESTRAL SPECIES 3 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a.i.b ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.a.a.a.a.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a.d ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Odontoceti_b ANCESTRAL SPECIES 3 ENSGT00940000161179 ENSGT00940000153311.a.b.a.i.b ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.a.a.a.a.d ENSGT00960000186656.a.a.a.a.a.a.a.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a.d ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Monodontidae ANCESTRAL SPECIES 1 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a.i.b ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.a.a.a.a.d ENSGT00960000186656.a.a.a.a.a.a.a.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a.d ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Narwhal MODERN SPECIES 299 SDCBP2 (ENSMMNG00015001232) ENSMMNG00015001271 NSFL1C (ENSMMNG00015001330) SIRPB2 (ENSMMNG00015001376) ENSMMNG00015001420 ENSMMNG00015001480 PDYN (ENSMMNG00015001508) STK35 (ENSMMNG00015001525) TGM3 (ENSMMNG00015001551) ENSMMNG00015001588 SNRPB (ENSMMNG00015001632) TMC2 (ENSMMNG00015001663) NOP56 (ENSMMNG00015001705) IDH3B (ENSMMNG00015001770) ENSMMNG00015001801 EBF4 (ENSMMNG00015001864) ##22 CPXM1 (ENSMMNG00015001922) C20orf141 (ENSMMNG00015001961) TMEM239 (ENSMMNG00015001983) PCED1A (ENSMMNG00015001996) VPS16 (ENSMMNG00015002058) PTPRA (ENSMMNG00015002181) GNRH2 (ENSMMNG00015002258) MRPS26 (ENSMMNG00015002286) ENSMMNG00015002307 AVP (ENSMMNG00015002327) UBOX5 (ENSMMNG00015002354) LZTS3 (ENSMMNG00015002379) DDRGK1 (ENSMMNG00015002411) ITPA (ENSMMNG00015002442) SLC4A11 (ENSMMNG00015002544) Beluga whale MODERN SPECIES 36 SDCBP2 (ENSDLEG00000013824) FKBP1A (ENSDLEG00000013838) NSFL1C (ENSDLEG00000013852) SIRPB2 (ENSDLEG00000013872) ENSDLEG00000013913 SIRPA (ENSDLEG00000014076) PDYN (ENSDLEG00000014109) STK35 (ENSDLEG00000014120) TGM3 (ENSDLEG00000014134) ENSDLEG00000014182 SNRPB (ENSDLEG00000014208) TMC2 (ENSDLEG00000014230) NOP56 (ENSDLEG00000014282) IDH3B (ENSDLEG00000014335) ENSDLEG00000014376 EBF4 (ENSDLEG00000014409) ##22 CPXM1 (ENSDLEG00000014437) TMEM239 (ENSDLEG00000014458) PCED1A (ENSDLEG00000014467) VPS16 (ENSDLEG00000014501) PTPRA (ENSDLEG00000014710) GNRH2 (ENSDLEG00000014803) MRPS26 (ENSDLEG00000014812) OXT (ENSDLEG00000014822) AVP (ENSDLEG00000014830) UBOX5 (ENSDLEG00000014837) FASTKD5 (ENSDLEG00000014849) LZTS3 (ENSDLEG00000014855) DDRGK1 (ENSDLEG00000014873) ENSDLEG00000014890 ENSDLEG00000014901 Vaquita MODERN SPECIES 6 SDCBP2 (ENSPSNG00000008976) ENSPSNG00000009021 NSFL1C (ENSPSNG00000009290) SIRPB2 (ENSPSNG00000009368) ENSPSNG00000009400 ENSPSNG00000009437 PDYN (ENSPSNG00000009476) STK35 (ENSPSNG00000009511) TGM3 (ENSPSNG00000009557) TGM6 (ENSPSNG00000009698) SNRPB (ENSPSNG00000009920) ENSPSNG00000010018 TMC2 (ENSPSNG00000010067) NOP56 (ENSPSNG00000010297) IDH3B (ENSPSNG00000010397) EBF4 (ENSPSNG00000010517) ##22 CPXM1 (ENSPSNG00000010775) C20orf141 (ENSPSNG00000010931) TMEM239 (ENSPSNG00000010997) PCED1A (ENSPSNG00000011017) VPS16 (ENSPSNG00000011145) PTPRA (ENSPSNG00000011277) GNRH2 (ENSPSNG00000011366) MRPS26 (ENSPSNG00000011474) ENSPSNG00000011530 AVP (ENSPSNG00000011588) UBOX5 (ENSPSNG00000011645) FASTKD5 (ENSPSNG00000011702) LZTS3 (ENSPSNG00000011749) DDRGK1 (ENSPSNG00000011849) ITPA (ENSPSNG00000012001) Dolphin MODERN SPECIES 3131 NOP56 (ENSTTRG00000003451) IDH3B (ENSTTRG00000003456) EBF4 (ENSTTRG00000003459) ##22 CPXM1 (ENSTTRG00000003461) ENSTTRG00000003463 PCED1A (ENSTTRG00000003464) VPS16 (ENSTTRG00000003465) Sperm whale MODERN SPECIES 5 RAD21L1 (ENSPCTG00005004743) FKBP1A (ENSPCTG00005004776) SNPH (ENSPCTG00005004784) ENSPCTG00005004812 NSFL1C (ENSPCTG00005004856) ENSPCTG00005004902 SIRPA (ENSPCTG00005004981) PDYN (ENSPCTG00005005036) ENSPCTG00005005063 TGM3 (ENSPCTG00005005080) SNRPB (ENSPCTG00005005146) TMC2 (ENSPCTG00005005177) NOP56 (ENSPCTG00005005235) IDH3B (ENSPCTG00005005317) ENSPCTG00005005363 EBF4 (ENSPCTG00005005419) ##22 CPXM1 (ENSPCTG00005005508) C20orf141 (ENSPCTG00005005563) TMEM239 (ENSPCTG00005005596) PCED1A (ENSPCTG00005005610) VPS16 (ENSPCTG00005005686) PTPRA (ENSPCTG00005006237) GNRH2 (ENSPCTG00005006488) MRPS26 (ENSPCTG00005006499) OXT (ENSPCTG00005006517) AVP (ENSPCTG00005006538) UBOX5 (ENSPCTG00005006561) FASTKD5 (ENSPCTG00005006610) LZTS3 (ENSPCTG00005006628) ENSPCTG00005006690 ENSPCTG00005006755 Blue whale MODERN SPECIES 6 ENSBMSG00010012953 NSFL1C (ENSBMSG00010012968) SIRPB2 (ENSBMSG00010012984) ENSBMSG00010012990 ENSBMSG00010013000 ENSBMSG00010013011 ENSBMSG00010013028 ENSBMSG00010013070 PDYN (ENSBMSG00010013088) STK35 (ENSBMSG00010013095) TGM3 (ENSBMSG00010013123) SNRPB (ENSBMSG00010013187) TMC2 (ENSBMSG00010013208) NOP56 (ENSBMSG00010013233) IDH3B (ENSBMSG00010013275) EBF4 (ENSBMSG00010013317) ##22 CPXM1 (ENSBMSG00010013401) C20orf141 (ENSBMSG00010013410) TMEM239 (ENSBMSG00010013415) PCED1A (ENSBMSG00010013426) VPS16 (ENSBMSG00010013463) PTPRA (ENSBMSG00010013508) GNRH2 (ENSBMSG00010013554) MRPS26 (ENSBMSG00010013566) ENSBMSG00010013571 AVP (ENSBMSG00010013576) UBOX5 (ENSBMSG00010013585) FASTKD5 (ENSBMSG00010013597) LZTS3 (ENSBMSG00010013607) DDRGK1 (ENSBMSG00010013620) ITPA (ENSBMSG00010013636) Pecora ANCESTRAL SPECIES 9 ENSGT00940000160661 ENSGT00940000163127 ENSGT00940000156364 ENSGT00950000183032.A.b.b.b ENSGT00960000186656.a.a.a.a.a.a.a.h ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a.g ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Yarkand deer MODERN SPECIES 15 PCMTD2 (ENSCHYG00000017351) ENSCHYG00000017221 ENSCHYG00000017151 ENSCHYG00000017131 ENSCHYG00000016987 PDYN (ENSCHYG00000016917) STK35 (ENSCHYG00000016840) TGM3 (ENSCHYG00000016615) ENSCHYG00000016577 TGM6 (ENSCHYG00000016358) SNRPB (ENSCHYG00000016280) ENSCHYG00000016253 TMC2 (ENSCHYG00000015951) NOP56 (ENSCHYG00000015519) IDH3B (ENSCHYG00000015279) EBF4 (ENSCHYG00000014974) ##22 CPXM1 (ENSCHYG00000014740) C20orf141 (ENSCHYG00000014683) TMEM239 (ENSCHYG00000014665) PCED1A (ENSCHYG00000014552) VPS16 (ENSCHYG00000014323) ENSCHYG00000014257 PTPRA (ENSCHYG00000013796) ENSCHYG00000013723 MRPS26 (ENSCHYG00000013692) ENSCHYG00000025665 AVP (ENSCHYG00000025643) UBOX5 (ENSCHYG00000025607) LZTS3 (ENSCHYG00000025572) DDRGK1 (ENSCHYG00000025512) ENSCHYG00000025430 Percora_a ANCESTRAL SPECIES 10 ENSGT00940000163127 ENSGT00940000156364 ENSGT00950000183032.A.b.b.b ENSGT00390000013968 ENSGT00960000186656.a.a.a.a.a.a.a.h ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a.g ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT01100000265926 ENSGT01080000258042 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b Siberian musk deer MODERN SPECIES 1193 PCMTD2 (ENSMMSG00000023634) GINS1 (ENSMMSG00000023646) ENSMMSG00000023657 ENSMMSG00000023669 ENSMMSG00000023681 ENSMMSG00000023694 PDYN (ENSMMSG00000023701) STK35 (ENSMMSG00000023704) TGM3 (ENSMMSG00000023710) TGM6 (ENSMMSG00000023719) SNRPB (ENSMMSG00000023733) TMC2 (ENSMMSG00000023743) NOP56 (ENSMMSG00000023757) IDH3B (ENSMMSG00000004870) ENSMMSG00000005067 EBF4 (ENSMMSG00000005104) ##22 CPXM1 (ENSMMSG00000005272) C20orf141 (ENSMMSG00000005330) TMEM239 (ENSMMSG00000005353) PCED1A (ENSMMSG00000005382) VPS16 (ENSMMSG00000005445) PTPRA (ENSMMSG00000005576) ENSMMSG00000005854 ENSMMSG00000005863 MRPS26 (ENSMMSG00000005887) ENSMMSG00000005907 AVP (ENSMMSG00000005924) UBOX5 (ENSMMSG00000005944) LZTS3 (ENSMMSG00000005981) DDRGK1 (ENSMMSG00000006058) ITPA (ENSMMSG00000006082) Bovidae ANCESTRAL SPECIES 10 ENSGT00940000156364 ENSGT00950000183032.A.b.b.b ENSGT00390000013968 ENSGT00960000186656.a.a.a.a.a.a.a.g.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a.h ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT01100000265926 ENSGT01080000258042 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b Caprinae ANCESTRAL SPECIES 23 ENSGT00960000186656.a.a.a.a.a.a.a.g.b.e ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453.g ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Rambouillet Sheep MODERN SPECIES 4 PCMTD2 (ENSOARG00020009092) GINS1 (ENSOARG00020009057) ENSOARG00020008971 ENSOARG00020008910 ENSOARG00020008858 ENSOARG00020008834 PDYN (ENSOARG00020008816) STK35 (ENSOARG00020008766) TGM3 (ENSOARG00020008614) TGM6 (ENSOARG00020008462) SNRPB (ENSOARG00020008421) TMC2 (ENSOARG00020008221) ENSOARG00020008123 IDH3B (ENSOARG00020008044) ENSOARG00020008013 EBF4 (ENSOARG00020007658) ##22 CPXM1 (ENSOARG00020007610) C20orf141 (ENSOARG00020007585) TMEM239 (ENSOARG00020007567) ENSOARG00020007480 ENSOARG00020007460 ENSOARG00020007094 ENSOARG00020007012 ENSOARG00020006897 VPS16 (ENSOARG00020006312) PTPRA (ENSOARG00020006169) MRPS26 (ENSOARG00020006087) OXT (ENSOARG00020006060) AVP (ENSOARG00020006038) UBOX5 (ENSOARG00020006014) FASTKD5 (ENSOARG00020005990) Goat MODERN SPECIES 4 ENSCHIG00000014141 ENSCHIG00000001274 ENSCHIG00000024563 ENSCHIG00000012593 PDYN (ENSCHIG00000016252) STK35 (ENSCHIG00000012450) TGM3 (ENSCHIG00000027237) TGM6 (ENSCHIG00000021722) ENSCHIG00000023142 ENSCHIG00000013875 SNRPB (ENSCHIG00000025449) TMC2 (ENSCHIG00000020430) NOP56 (ENSCHIG00000023450) IDH3B (ENSCHIG00000011555) ENSCHIG00000022751 EBF4 (ENSCHIG00000010850) ##22 CPXM1 (ENSCHIG00000021212) C20orf141 (ENSCHIG00000010060) TMEM239 (ENSCHIG00000011946) PCED1A (ENSCHIG00000010435) VPS16 (ENSCHIG00000011213) PTPRA (ENSCHIG00000017604) ENSCHIG00000001147 ENSCHIG00000017609 AVP (ENSCHIG00000010500) UBOX5 (ENSCHIG00000011900) FASTKD5 (ENSCHIG00000011596) LZTS3 (ENSCHIG00000015799) DDRGK1 (ENSCHIG00000009311) ITPA (ENSCHIG00000014634) SLC4A11 (ENSCHIG00000016611) Bovinae ANCESTRAL SPECIES 20 ENSGT00940000156364 ENSGT00950000183032.A.b.b.b ENSGT00390000013968 ENSGT00960000186656.a.a.a.a.a.a.a.h ENSGT00960000186656.a.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a.g.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT01100000265926 ENSGT01080000258042 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b American bison MODERN SPECIES 2997 ENSBBBG00000009069 ENSBBBG00000018748 ENSBBBG00000018760 ENSBBBG00000018771 ENSBBBG00000018780 PDYN (ENSBBBG00000004720) STK35 (ENSBBBG00000018792) ENSBBBG00000018799 TGM3 (ENSBBBG00000018830) TGM6 (ENSBBBG00000018883) SNRPB (ENSBBBG00000018900) TMC2 (ENSBBBG00000004790) NOP56 (ENSBBBG00000018939) IDH3B (ENSBBBG00000008165) ENSBBBG00000004829 ENSBBBG00000018986 ##22 CPXM1 (ENSBBBG00000019000) C20orf141 (ENSBBBG00000019008) TMEM239 (ENSBBBG00000004850) PCED1A (ENSBBBG00000019029) VPS16 (ENSBBBG00000019093) PTPRA (ENSBBBG00000019230) GNRH2 (ENSBBBG00000019247) MRPS26 (ENSBBBG00000019255) ENSBBBG00000019257 UBOX5 (ENSBBBG00000004987) FASTKD5 (ENSBBBG00000019270) LZTS3 (ENSBBBG00000019286) DDRGK1 (ENSBBBG00000005001) ITPA (ENSBBBG00000008358) SLC4A11 (ENSBBBG00000019388) Bos ANCESTRAL SPECIES 22 ENSGT00940000156364 ENSGT00950000183032.A.b.b.b ENSGT00390000013968.e ENSGT00960000186656.a.a.a.a.a.a.a.h.a ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a.g.b.d ENSGT00960000186656.a.a.a.a.a.a.a.g.b.c.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT01100000265926 ENSGT01080000258042 ENSGT00390000008453 ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.b.a ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b Bos_b ANCESTRAL SPECIES 4 ENSGT00390000013968.e ENSGT00440000033805.g ENSGT00940000159424.n.a ENSGT00960000186656.a.a.a.a.a.a.a.h.a ENSGT00960000186656.a.a.a.a.a.a.a.h.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a.g.b.d ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT01100000265926 ENSGT01080000258042 ENSGT00390000008453 ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.b.a ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b Hybrid Bos Indicus MODERN SPECIES 4 ENSBIXG00005017583 ENSBIXG00005017565 ENSBIXG00005005849 ENSBIXG00005017530 ENSBIXG00005017502 ENSBIXG00005017455 PDYN (ENSBIXG00005017405) STK35 (ENSBIXG00005017349) TGM3 (ENSBIXG00005017324) TGM6 (ENSBIXG00005017267) SNRPB (ENSBIXG00005017162) TMC2 (ENSBIXG00005017128) NOP56 (ENSBIXG00005005732) IDH3B (ENSBIXG00005017044) ENSBIXG00005016971 EBF4 (ENSBIXG00005002747) ##22 CPXM1 (ENSBIXG00005016591) C20orf141 (ENSBIXG00005016567) TMEM239 (ENSBIXG00005016548) PCED1A (ENSBIXG00005007034) VPS16 (ENSBIXG00005016496) PTPRA (ENSBIXG00005016390) ENSBIXG00005016349 ENSBIXG00005016326 MRPS26 (ENSBIXG00005016270) ENSBIXG00005006570 ENSBIXG00005016246 AVP (ENSBIXG00005016214) UBOX5 (ENSBIXG00005016186) FASTKD5 (ENSBIXG00005016144) LZTS3 (ENSBIXG00005016113) Cow MODERN SPECIES 4 ENSBTAG00000011638 ENSBTAG00000054594 SIRPB1 (ENSBTAG00000039520) ENSBTAG00000051981 ENSBTAG00000048087 SIRPA (ENSBTAG00000007213) PDYN (ENSBTAG00000045520) STK35 (ENSBTAG00000003561) TGM3 (ENSBTAG00000001785) TGM6 (ENSBTAG00000037464) SNRPB (ENSBTAG00000001038) TMC2 (ENSBTAG00000018811) NOP56 (ENSBTAG00000018812) IDH3B (ENSBTAG00000018813) ENSBTAG00000052166 EBF4 (ENSBTAG00000037757) ##22 ENSBTAG00000050499 CPXM1 (ENSBTAG00000011458) C13H20orf141 (ENSBTAG00000021817) TMEM239 (ENSBTAG00000021816) PCED1A (ENSBTAG00000003863) VPS16 (ENSBTAG00000001320) ENSBTAG00000048414 PTPRA (ENSBTAG00000011425) GNRH2 (ENSBTAG00000049511) MRPS26 (ENSBTAG00000000825) OXT (ENSBTAG00000008026) AVP (ENSBTAG00000008027) FASTKD5 (ENSBTAG00000051021) UBOX5 (ENSBTAG00000015379) LZTS3 (ENSBTAG00000020454) Bos_a ANCESTRAL SPECIES 7 ENSGT00940000163127 ENSGT00940000156364 ENSGT00950000183032.A.b.b.b ENSGT00390000013968.e ENSGT00960000186656.a.a.a.a.a.a.a.h.a ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.a.a.g.b.c.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT01080000258042 ENSGT00390000005119 ENSGT00390000008453 ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.b.a ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT01030000234607.A.a.b.b ENSGT00510000049555 ENSGT00940000154078.b Domestic yak MODERN SPECIES 3 PCMTD2 (ENSBGRG00000011787) ENSBGRG00000011646 ENSBGRG00000011162 ENSBGRG00000011070 ENSBGRG00000011028 ENSBGRG00000010717 PDYN (ENSBGRG00000010593) STK35 (ENSBGRG00000016079) TGM3 (ENSBGRG00000015833) TGM6 (ENSBGRG00000015301) SNRPB (ENSBGRG00000014997) TMC2 (ENSBGRG00000014696) NOP56 (ENSBGRG00000014581) IDH3B (ENSBGRG00000014361) ENSBGRG00000014313 EBF4 (ENSBGRG00000013966) ##22 CPXM1 (ENSBGRG00000013785) C20orf141 (ENSBGRG00000013721) TMEM239 (ENSBGRG00000013692) PCED1A (ENSBGRG00000013633) VPS16 (ENSBGRG00000013110) PTPRA (ENSBGRG00000012527) ENSBGRG00000012443 GNRH2 (ENSBGRG00000012403) MRPS26 (ENSBGRG00000012344) ENSBGRG00000012319 ENSBGRG00000012264 AVP (ENSBGRG00000012208) FASTKD5 (ENSBGRG00000012156) UBOX5 (ENSBGRG00000012095) LZTS3 (ENSBGRG00000011995) Wild yak DUPLICATION Wild yak MODERN SPECIES 619 ENSBMUG00000019812 NOP56 (ENSBMUG00000019823) IDH3B (ENSBMUG00000019865) ENSBMUG00000019875 EBF4 (ENSBMUG00000019908) ##22 ENSBMUG00000019937 ##22 CPXM1 (ENSBMUG00000019952) C20orf141 (ENSBMUG00000019955) TMEM239 (ENSBMUG00000019961) PCED1A (ENSBMUG00000019999) VPS16 (ENSBMUG00000020060) PTPRA (ENSBMUG00000020156) ENSBMUG00000020206 MRPS26 (ENSBMUG00000020209) UBOX5 (ENSBMUG00000020233) LZTS3 (ENSBMUG00000020278) DDRGK1 (ENSBMUG00000020325) ITPA (ENSBMUG00000020353) SLC4A11 (ENSBMUG00000020486) DNAAF9 (ENSBMUG00000020518) Wild yak MODERN SPECIES 619 ENSBMUG00000019812 NOP56 (ENSBMUG00000019823) IDH3B (ENSBMUG00000019865) ENSBMUG00000019875 EBF4 (ENSBMUG00000019908) ##22 ENSBMUG00000019937 ##22 CPXM1 (ENSBMUG00000019952) C20orf141 (ENSBMUG00000019955) TMEM239 (ENSBMUG00000019961) PCED1A (ENSBMUG00000019999) VPS16 (ENSBMUG00000020060) PTPRA (ENSBMUG00000020156) ENSBMUG00000020206 MRPS26 (ENSBMUG00000020209) UBOX5 (ENSBMUG00000020233) LZTS3 (ENSBMUG00000020278) DDRGK1 (ENSBMUG00000020325) ITPA (ENSBMUG00000020353) SLC4A11 (ENSBMUG00000020486) DNAAF9 (ENSBMUG00000020518) ATRN (ENSBMUG00000020552) Laurasiatheria_b ANCESTRAL SPECIES 19 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.g.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Laurasiatheria_c ANCESTRAL SPECIES 17 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.g.a ENSGT00960000186656.a.a.a.a.a.b.g.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Equus ANCESTRAL SPECIES 8 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b.b ENSGT00960000186656.a.a.a.a.a.b.g.a.b ENSGT00960000186656.a.a.a.a.a.b.g.a.a.a ENSGT00960000186656.a.a.a.b.a ENSGT00960000186656.a.a.a.a.a.b.g.a.a.b ENSGT00960000186656.a.a.a.a.a.b.g.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 ENSGT00390000003692 Donkey MODERN SPECIES 6 ENSEASG00005012972 ENSEASG00005024464 ENSEASG00005003520 ENSEASG00005027707 ENSEASG00005037192 ENSEASG00005028952 ENSEASG00005025587 PDYN (ENSEASG00005012975) STK35 (ENSEASG00005012978) TGM3 (ENSEASG00005012987) TGM6 (ENSEASG00005012990) SNRPB (ENSEASG00005012991) TMC2 (ENSEASG00005012994) NOP56 (ENSEASG00005012996) IDH3B (ENSEASG00005013006) EBF4 (ENSEASG00005013009) ##22 CPXM1 (ENSEASG00005013012) ENSEASG00005024670 PCED1A (ENSEASG00005013018) VPS16 (ENSEASG00005013020) PTPRA (ENSEASG00005013026) GNRH2 (ENSEASG00005013029) MRPS26 (ENSEASG00005013030) ENSEASG00005031053 AVP (ENSEASG00005013032) UBOX5 (ENSEASG00005013034) FASTKD5 (ENSEASG00005033287) LZTS3 (ENSEASG00005013035) DDRGK1 (ENSEASG00005013036) ITPA (ENSEASG00005000029) SLC4A11 (ENSEASG00005000065) Horse MODERN SPECIES 14 SIRPB2 (ENSECAG00000002438) ENSECAG00000055343 ENSECAG00000056164 ENSECAG00000030891 ENSECAG00000048281 ENSECAG00000010990 ENSECAG00000035431 PDYN (ENSECAG00000007241) STK35 (ENSECAG00000057233) TGM3 (ENSECAG00000023860) TGM6 (ENSECAG00000019808) SNRPB (ENSECAG00000011944) TMC2 (ENSECAG00000010161) NOP56 (ENSECAG00000021299) IDH3B (ENSECAG00000000261) EBF4 (ENSECAG00000010003) ##22 CPXM1 (ENSECAG00000021019) TMEM239 (ENSECAG00000021010) PCED1A (ENSECAG00000016497) VPS16 (ENSECAG00000013499) PTPRA (ENSECAG00000010855) GNRH2 (ENSECAG00000039220) MRPS26 (ENSECAG00000008620) OXT (ENSECAG00000034091) AVP (ENSECAG00000024857) UBOX5 (ENSECAG00000024708) FASTKD5 (ENSECAG00000005271) LZTS3 (ENSECAG00000024058) DDRGK1 (ENSECAG00000020284) SLC4A11 (ENSECAG00000020277) ITPA (ENSECAG00000014049) Chiroptera ANCESTRAL SPECIES 7 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Megabat MODERN SPECIES 3538 EBF4 (ENSPVAG00000006830) ##22 CPXM1 (ENSPVAG00000006831) ENSPVAG00000006832 PCED1A (ENSPVAG00000006834) VPS16 (ENSPVAG00000006835) PTPRA (ENSPVAG00000006836) MRPS26 (ENSPVAG00000006837) Microchiroptera ANCESTRAL SPECIES 6 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Greater horseshoe bat MODERN SPECIES 15 ENSRFEG00010012485 ENSRFEG00010012547 ENSRFEG00010012747 ENSRFEG00010012792 ENSRFEG00010012879 PDYN (ENSRFEG00010012936) STK35 (ENSRFEG00010012984) ENSRFEG00010013050 TGM3 (ENSRFEG00010013066) TGM6 (ENSRFEG00010013296) SNRPB (ENSRFEG00010013715) ZNF343 (ENSRFEG00010013775) TMC2 (ENSRFEG00010014001) NOP56 (ENSRFEG00010014305) IDH3B (ENSRFEG00010014373) EBF4 (ENSRFEG00010014520) ##22 ENSRFEG00010014940 CPXM1 (ENSRFEG00010014994) C20orf141 (ENSRFEG00010015227) TMEM239 (ENSRFEG00010015315) PCED1A (ENSRFEG00010015334) VPS16 (ENSRFEG00010015404) PTPRA (ENSRFEG00010015537) MRPS26 (ENSRFEG00010015697) ENSRFEG00010015751 AVP (ENSRFEG00010015809) UBOX5 (ENSRFEG00010015870) FASTKD5 (ENSRFEG00010015928) LZTS3 (ENSRFEG00010015945) DDRGK1 (ENSRFEG00010016047) ITPA (ENSRFEG00010016192) Microbat MODERN SPECIES 1115 ENSMLUG00000030507 TGM6 (ENSMLUG00000016945) SNRPB (ENSMLUG00000016951) ENSMLUG00000027258 TMC2 (ENSMLUG00000023589) NOP56 (ENSMLUG00000027085) IDH3B (ENSMLUG00000008193) EBF4 (ENSMLUG00000023832) ##22 CPXM1 (ENSMLUG00000002715) TMEM239 (ENSMLUG00000002712) PCED1A (ENSMLUG00000028662) VPS16 (ENSMLUG00000016651) PTPRA (ENSMLUG00000029093) UBOX5 (ENSMLUG00000025497) FASTKD5 (ENSMLUG00000000343) LZTS3 (ENSMLUG00000000347) DDRGK1 (ENSMLUG00000000352) ITPA (ENSMLUG00000000358) SLC4A11 (ENSMLUG00000000362) DNAAF9 (ENSMLUG00000000381) ATRN (ENSMLUG00000007943) ENSMLUG00000024610 ADAM33 (ENSMLUG00000008010) Carnivora ANCESTRAL SPECIES 20 ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.g.b ENSGT00960000186656.a.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Felidae ANCESTRAL SPECIES 3 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Cat MODERN SPECIES 2 ENSFCAG00000044954 ENSFCAG00000049245 ENSFCAG00000040585 ENSFCAG00000047787 ENSFCAG00000003555 PDYN (ENSFCAG00000032187) STK35 (ENSFCAG00000007974) ENSFCAG00000046430 TGM3 (ENSFCAG00000014443) TGM6 (ENSFCAG00000014445) SNRPB (ENSFCAG00000034090) ENSFCAG00000047871 TMC2 (ENSFCAG00000014449) NOP56 (ENSFCAG00000014450) IDH3B (ENSFCAG00000014452) EBF4 (ENSFCAG00000014453) ##22 PCED1A (ENSFCAG00000002886) CPXM1 (ENSFCAG00000014454) CA3H20orf141 (ENSFCAG00000035021) TMEM239 (ENSFCAG00000034447) VPS16 (ENSFCAG00000001825) PTPRA (ENSFCAG00000019232) ENSFCAG00000034109 MRPS26 (ENSFCAG00000028185) OXT (ENSFCAG00000026996) AVP (ENSFCAG00000046132) UBOX5 (ENSFCAG00000018148) LZTS3 (ENSFCAG00000013412) DDRGK1 (ENSFCAG00000031864) ITPA (ENSFCAG00000040485) SLC4A11 (ENSFCAG00000013416) Panthera ANCESTRAL SPECIES 2 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.a.b.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Panthera_a ANCESTRAL SPECIES 1 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.a.b.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 lion MODERN SPECIES 3 ENSPLOG00000003810 NSFL1C (ENSPLOG00000003733) SIRPB2 (ENSPLOG00000003678) ENSPLOG00000003668 ENSPLOG00000003632 ENSPLOG00000003584 ENSPLOG00000003564 PDYN (ENSPLOG00000003536) STK35 (ENSPLOG00000003522) TGM3 (ENSPLOG00000003495) TGM6 (ENSPLOG00000003443) SNRPB (ENSPLOG00000003398) TMC2 (ENSPLOG00000003363) NOP56 (ENSPLOG00000003299) IDH3B (ENSPLOG00000003273) EBF4 (ENSPLOG00000003192) ##22 CPXM1 (ENSPLOG00000003115) C20orf141 (ENSPLOG00000003091) TMEM239 (ENSPLOG00000003079) PCED1A (ENSPLOG00000003066) VPS16 (ENSPLOG00000002976) PTPRA (ENSPLOG00000002856) ENSPLOG00000002808 MRPS26 (ENSPLOG00000002782) ENSPLOG00000002759 AVP (ENSPLOG00000002739) UBOX5 (ENSPLOG00000002712) LZTS3 (ENSPLOG00000002688) DDRGK1 (ENSPLOG00000002659) ITPA (ENSPLOG00000002614) SLC4A11 (ENSPLOG00000002284) Tiger DUPLICATION Tiger MODERN SPECIES 16 ENSPTIG00000017214 ENSPTIG00000017945 ENSPTIG00000018547 PDYN (ENSPTIG00000021174) STK35 (ENSPTIG00000021726) TGM3 (ENSPTIG00000021860) TGM6 (ENSPTIG00000001417) SNRPB (ENSPTIG00000007468) ENSPTIG00000009343 TMC2 (ENSPTIG00000010266) NOP56 (ENSPTIG00000012828) IDH3B (ENSPTIG00000013758) ENSPTIG00000017740 ##22 ENSPTIG00000018378 ##22 CPXM1 (ENSPTIG00000018562) C20orf141 (ENSPTIG00000019566) TMEM239 (ENSPTIG00000000563) PCED1A (ENSPTIG00000002362) VPS16 (ENSPTIG00000008228) PTPRA (ENSPTIG00000016170) GNRH2 (ENSPTIG00000020224) UBOX5 (ENSPTIG00000021693) LZTS3 (ENSPTIG00000002751) DDRGK1 (ENSPTIG00000006358) ITPA (ENSPTIG00000007338) SLC4A11 (ENSPTIG00000010185) DNAAF9 (ENSPTIG00000015899) ATRN (ENSPTIG00000018935) Tiger MODERN SPECIES 16 ENSPTIG00000017214 ENSPTIG00000017945 ENSPTIG00000018547 PDYN (ENSPTIG00000021174) STK35 (ENSPTIG00000021726) TGM3 (ENSPTIG00000021860) TGM6 (ENSPTIG00000001417) SNRPB (ENSPTIG00000007468) ENSPTIG00000009343 TMC2 (ENSPTIG00000010266) NOP56 (ENSPTIG00000012828) IDH3B (ENSPTIG00000013758) ENSPTIG00000017740 ##22 ENSPTIG00000018378 ##22 CPXM1 (ENSPTIG00000018562) C20orf141 (ENSPTIG00000019566) TMEM239 (ENSPTIG00000000563) PCED1A (ENSPTIG00000002362) VPS16 (ENSPTIG00000008228) PTPRA (ENSPTIG00000016170) GNRH2 (ENSPTIG00000020224) UBOX5 (ENSPTIG00000021693) LZTS3 (ENSPTIG00000002751) DDRGK1 (ENSPTIG00000006358) ITPA (ENSPTIG00000007338) SLC4A11 (ENSPTIG00000010185) DNAAF9 (ENSPTIG00000015899) ATRN (ENSPTIG00000018935) ENSPTIG00000007825 Caniformia ANCESTRAL SPECIES ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.c.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.g.b ENSGT00960000186656.a.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT00950000186116 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Caniformia_b ANCESTRAL SPECIES ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b.d ENSGT00960000186656.a.a.a.a.a.b.h.c.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a ENSGT00960000186656.a.a.a.a.b.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT00950000186116 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Mustelinae ANCESTRAL SPECIES 43 ENSGT00960000186656.a.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.g.b ENSGT00960000186656.a.a.a.a.b.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a.b ENSGT00960000186656.a.a.a.a.b.a ENSGT00960000186656.a.a.a.a.a.b.h.c.a.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 American mink MODERN SPECIES 28 ENSNVIG00000000026 ENSNVIG00000020716 ENSNVIG00000020707 ENSNVIG00000020563 ENSNVIG00000020542 ENSNVIG00000020512 PDYN (ENSNVIG00000020504) STK35 (ENSNVIG00000020501) TGM3 (ENSNVIG00000020470) TGM6 (ENSNVIG00000020430) SNRPB (ENSNVIG00000020410) ENSNVIG00000020401 TMC2 (ENSNVIG00000020370) NOP56 (ENSNVIG00000020275) IDH3B (ENSNVIG00000020233) EBF4 (ENSNVIG00000020146) ##22 CPXM1 (ENSNVIG00000020136) ENSNVIG00000020124 TMEM239 (ENSNVIG00000020119) F113A (ENSNVIG00000020089) VPS16 (ENSNVIG00000020048) PTPRA (ENSNVIG00000019955) GNRH2 (ENSNVIG00000019917) MRPS26 (ENSNVIG00000019909) ENSNVIG00000019896 RNF37 (ENSNVIG00000019886) FASTKD5 (ENSNVIG00000019883) LZTS3 (ENSNVIG00000019842) DDRGK1 (ENSNVIG00000019833) ITPA (ENSNVIG00000019784) SLC4A11 (ENSNVIG00000019720) Ferret MODERN SPECIES 337 ENSMPUG00000009591 ENSMPUG00000009580 ENSMPUG00000009575 ENSMPUG00000009561 PDYN (ENSMPUG00000009541) ENSMPUG00000009532 STK35 (ENSMPUG00000009523) TGM3 (ENSMPUG00000009511) TGM6 (ENSMPUG00000009294) SNRPB (ENSMPUG00000009283) ENSMPUG00000019147 TMC2 (ENSMPUG00000009125) NOP56 (ENSMPUG00000009118) ENSMPUG00000009107 EBF4 (ENSMPUG00000009093) ##22 CPXM1 (ENSMPUG00000009076) TMEM239 (ENSMPUG00000009071) PCED1A (ENSMPUG00000009061) VPS16 (ENSMPUG00000009037) PTPRA (ENSMPUG00000009021) MRPS26 (ENSMPUG00000009018) ENSMPUG00000009014 ENSMPUG00000008974 AVP (ENSMPUG00000008942) UBOX5 (ENSMPUG00000008899) FASTKD5 (ENSMPUG00000019143) LZTS3 (ENSMPUG00000008889) DDRGK1 (ENSMPUG00000008881) ITPA (ENSMPUG00000008868) SLC4A11 (ENSMPUG00000008860) Ursidae ANCESTRAL SPECIES 14 ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b.d ENSGT00960000186656.a.a.b.c ENSGT00960000186656.a.a.a.a.a.b.h.c.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a ENSGT00960000186656.a.a.a.a.b.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT00950000186116 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Giant Panda DUPLICATION Giant Panda MODERN SPECIES 4 ENSAMEG00000027402 ENSAMEG00000024682 ENSAMEG00000003676 ENSAMEG00000030677 ENSAMEG00000011475 PDYN (ENSAMEG00000026821) STK35 (ENSAMEG00000011461) ENSAMEG00000026776 TGM3 (ENSAMEG00000011440) TGM6 (ENSAMEG00000011376) SNRPB (ENSAMEG00000011353) TMC2 (ENSAMEG00000011324) NOP56 (ENSAMEG00000011299) IDH3B (ENSAMEG00000011240) ENSAMEG00000011229 ##22 ENSAMEG00000011228 ##22 CPXM1 (ENSAMEG00000011199) C20orf141 (ENSAMEG00000027335) TMEM239 (ENSAMEG00000011193) VPS16 (ENSAMEG00000011129) PTPRA (ENSAMEG00000011086) GNRH2 (ENSAMEG00000028228) MRPS26 (ENSAMEG00000011078) AVP (ENSAMEG00000024796) UBOX5 (ENSAMEG00000011065) LZTS3 (ENSAMEG00000028727) DDRGK1 (ENSAMEG00000011041) ITPA (ENSAMEG00000011021) DNAAF9 (ENSAMEG00000010967) ATRN (ENSAMEG00000010900) ENSAMEG00000010895 Giant Panda MODERN SPECIES 4 NSFL1C (ENSAMEG00000000340) ENSAMEG00000027402 ENSAMEG00000024682 ENSAMEG00000003676 ENSAMEG00000030677 ENSAMEG00000011475 PDYN (ENSAMEG00000026821) STK35 (ENSAMEG00000011461) ENSAMEG00000026776 TGM3 (ENSAMEG00000011440) TGM6 (ENSAMEG00000011376) SNRPB (ENSAMEG00000011353) TMC2 (ENSAMEG00000011324) NOP56 (ENSAMEG00000011299) IDH3B (ENSAMEG00000011240) ENSAMEG00000011229 ##22 ENSAMEG00000011228 ##22 CPXM1 (ENSAMEG00000011199) C20orf141 (ENSAMEG00000027335) TMEM239 (ENSAMEG00000011193) VPS16 (ENSAMEG00000011129) PTPRA (ENSAMEG00000011086) GNRH2 (ENSAMEG00000028228) MRPS26 (ENSAMEG00000011078) AVP (ENSAMEG00000024796) UBOX5 (ENSAMEG00000011065) LZTS3 (ENSAMEG00000028727) DDRGK1 (ENSAMEG00000011041) ITPA (ENSAMEG00000011021) DNAAF9 (ENSAMEG00000010967) ATRN (ENSAMEG00000010900) Ursus ANCESTRAL SPECIES 1 ENSGT00960000186656.a.a.b.d ENSGT00960000186656.a.a.b.c ENSGT00960000186656.a.a.a.a.a.b.h.c.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a.f.a ENSGT00960000186656.a.a.a.a.a.b.h.c.a.e ENSGT00950000183149.B ENSGT00940000158197 ENSGT00950000186116 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.b.b.d ENSGT01050000244942.b.a.b ENSGT01090000261283 ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000005119 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Polar bear MODERN SPECIES 253 ENSUMAG00000001498 ENSUMAG00000001528 ENSUMAG00000001553 ENSUMAG00000001733 ENSUMAG00000001755 PDYN (ENSUMAG00000001872) STK35 (ENSUMAG00000001890) ENSUMAG00000001909 TGM3 (ENSUMAG00000001931) TGM6 (ENSUMAG00000002015) ENSUMAG00000002123 TMC2 (ENSUMAG00000002135) ENSUMAG00000002153 NOP56 (ENSUMAG00000002172) IDH3B (ENSUMAG00000002379) ENSUMAG00000002395 ##22 CPXM1 (ENSUMAG00000002402) C20orf141 (ENSUMAG00000002405) PCED1A (ENSUMAG00000002408) VPS16 (ENSUMAG00000002471) PTPRA (ENSUMAG00000002744) MRPS26 (ENSUMAG00000002754) GNRH2 (ENSUMAG00000002757) UBOX5 (ENSUMAG00000002762) FASTKD5 (ENSUMAG00000002765) DDRGK1 (ENSUMAG00000002775) ITPA (ENSUMAG00000002783) DNAAF9 (ENSUMAG00000002804) ATRN (ENSUMAG00000003024) ADAM33 (ENSUMAG00000003732) SIGLEC1 (ENSUMAG00000003800) American black bear DUPLICATION American black bear MODERN SPECIES 1118 TGM6 (ENSUAMG00000005979) ENSUAMG00000005984 TMC2 (ENSUAMG00000005992) ENSUAMG00000006007 NOP56 (ENSUAMG00000006010) IDH3B (ENSUAMG00000006031) ENSUAMG00000006041 ##22 ENSUAMG00000006047 ##22 CPXM1 (ENSUAMG00000006052) C20orf141 (ENSUAMG00000006058) TMEM239 (ENSUAMG00000006060) PCED1A (ENSUAMG00000006062) VPS16 (ENSUAMG00000006066) American black bear MODERN SPECIES 1118 TGM6 (ENSUAMG00000005979) ENSUAMG00000005984 TMC2 (ENSUAMG00000005992) ENSUAMG00000006007 NOP56 (ENSUAMG00000006010) IDH3B (ENSUAMG00000006031) ENSUAMG00000006041 ##22 ENSUAMG00000006047 ##22 CPXM1 (ENSUAMG00000006052) C20orf141 (ENSUAMG00000006058) TMEM239 (ENSUAMG00000006060) PCED1A (ENSUAMG00000006062) VPS16 (ENSUAMG00000006066) Canidae ANCESTRAL SPECIES 19 ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.c.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a.h ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a.g ENSGT00950000183149.B ENSGT00940000158197 ENSGT00950000186116 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b.o ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Red fox DUPLICATION Red fox MODERN SPECIES 91 ENSVVUG00000025730 ENSVVUG00000025721 ENSVVUG00000025706 PDYN (ENSVVUG00000025702) STK35 (ENSVVUG00000025697) ENSVVUG00000025696 TGM3 (ENSVVUG00000025669) TGM6 (ENSVVUG00000025656) SNRPB (ENSVVUG00000025654) TMC2 (ENSVVUG00000025649) NOP56 (ENSVVUG00000025634) IDH3B (ENSVVUG00000025632) ENSVVUG00000025627 ##22 ENSVVUG00000025619 ##22 CPXM1 (ENSVVUG00000025457) CUNH20orf141 (ENSVVUG00000025444) TMEM239 (ENSVVUG00000025442) PCED1A (ENSVVUG00000025441) VPS16 (ENSVVUG00000025438) PTPRA (ENSVVUG00000025437) GNRH2 (ENSVVUG00000025436) MRPS26 (ENSVVUG00000025435) ENSVVUG00000025434 UBOX5 (ENSVVUG00000025433) FASTKD5 (ENSVVUG00000025432) LZTS3 (ENSVVUG00000025431) ENSVVUG00000025428 ITPA (ENSVVUG00000025426) SLC4A11 (ENSVVUG00000025179) Red fox MODERN SPECIES 91 ENSVVUG00000025730 ENSVVUG00000025721 ENSVVUG00000025706 PDYN (ENSVVUG00000025702) STK35 (ENSVVUG00000025697) ENSVVUG00000025696 TGM3 (ENSVVUG00000025669) TGM6 (ENSVVUG00000025656) SNRPB (ENSVVUG00000025654) TMC2 (ENSVVUG00000025649) NOP56 (ENSVVUG00000025634) IDH3B (ENSVVUG00000025632) ENSVVUG00000025627 ##22 ENSVVUG00000025619 ##22 CPXM1 (ENSVVUG00000025457) CUNH20orf141 (ENSVVUG00000025444) TMEM239 (ENSVVUG00000025442) PCED1A (ENSVVUG00000025441) VPS16 (ENSVVUG00000025438) PTPRA (ENSVVUG00000025437) GNRH2 (ENSVVUG00000025436) MRPS26 (ENSVVUG00000025435) ENSVVUG00000025434 UBOX5 (ENSVVUG00000025433) FASTKD5 (ENSVVUG00000025432) LZTS3 (ENSVVUG00000025431) ENSVVUG00000025428 ITPA (ENSVVUG00000025426) Canis_lupus ANCESTRAL SPECIES 13 ENSGT00960000186656.a.a.a.a.a.b.h.c.b ENSGT00960000186656.a.a.a.a.a.b.g.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a.h.a ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.h.c.a.g ENSGT00950000183149.B ENSGT00940000158197 ENSGT00950000186116 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.b.b.d ENSGT01090000261283 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b.o ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 ENSGT00390000003692 Dog MODERN SPECIES 16 ENSCAFG00845018616 ENSCAFG00845018514 ENSCAFG00845018352 ENSCAFG00845017978 ENSCAFG00845017650 ENSCAFG00845017411 PDYN (ENSCAFG00845017332) ENSCAFG00845017308 TGM3 (ENSCAFG00845017154) TGM6 (ENSCAFG00845016987) SNRPB (ENSCAFG00845016780) ENSCAFG00845016737 TMC2 (ENSCAFG00845016638) NOP56 (ENSCAFG00845016469) IDH3B (ENSCAFG00845016410) EBF4 (ENSCAFG00845015997) ##22 CPXM1 (ENSCAFG00845015888) C20orf141 (ENSCAFG00845015857) TMEM239 (ENSCAFG00845015828) PCED1A (ENSCAFG00845015805) VPS16 (ENSCAFG00845015734) ENSCAFG00845015669 PTPRA (ENSCAFG00845015505) MRPS26 (ENSCAFG00845015407) OXT (ENSCAFG00845015382) AVP (ENSCAFG00845015347) UBOX5 (ENSCAFG00845015301) LZTS3 (ENSCAFG00845015258) DDRGK1 (ENSCAFG00845015196) ITPA (ENSCAFG00845015147) SLC4A11 (ENSCAFG00845015025) Dingo DUPLICATION Dingo MODERN SPECIES 343 ENSCAFG00020003795 ENSCAFG00020003700 ENSCAFG00020003695 ENSCAFG00020003682 PDYN (ENSCAFG00020003677) STK35 (ENSCAFG00020003672) ENSCAFG00020003667 TGM3 (ENSCAFG00020003662) TGM6 (ENSCAFG00020003643) ENSCAFG00020003638 ENSCAFG00020003620 TMC2 (ENSCAFG00020003606) NOP56 (ENSCAFG00020003577) IDH3B (ENSCAFG00020003553) ENSCAFG00020003549 ##22 ENSCAFG00020003540 ##22 CPXM1 (ENSCAFG00020003259) C20orf141 (ENSCAFG00020003242) TMEM239 (ENSCAFG00020003241) PCED1A (ENSCAFG00020003234) VPS16 (ENSCAFG00020003216) PTPRA (ENSCAFG00020003204) MRPS26 (ENSCAFG00020003198) ENSCAFG00020003193 AVP (ENSCAFG00020003184) UBOX5 (ENSCAFG00020003178) LZTS3 (ENSCAFG00020003176) DDRGK1 (ENSCAFG00020003173) ENSCAFG00020003168 SLC4A11 (ENSCAFG00020003100) DNAAF9 (ENSCAFG00020002711) Dingo MODERN SPECIES 343 ENSCAFG00020003841 ENSCAFG00020003795 ENSCAFG00020003700 ENSCAFG00020003695 ENSCAFG00020003682 PDYN (ENSCAFG00020003677) STK35 (ENSCAFG00020003672) ENSCAFG00020003667 TGM3 (ENSCAFG00020003662) TGM6 (ENSCAFG00020003643) ENSCAFG00020003638 ENSCAFG00020003620 TMC2 (ENSCAFG00020003606) NOP56 (ENSCAFG00020003577) IDH3B (ENSCAFG00020003553) ENSCAFG00020003549 ##22 ENSCAFG00020003540 ##22 CPXM1 (ENSCAFG00020003259) C20orf141 (ENSCAFG00020003242) TMEM239 (ENSCAFG00020003241) PCED1A (ENSCAFG00020003234) VPS16 (ENSCAFG00020003216) PTPRA (ENSCAFG00020003204) MRPS26 (ENSCAFG00020003198) ENSCAFG00020003193 AVP (ENSCAFG00020003184) UBOX5 (ENSCAFG00020003178) LZTS3 (ENSCAFG00020003176) DDRGK1 (ENSCAFG00020003173) ENSCAFG00020003168 SLC4A11 (ENSCAFG00020003100) Euarchontoglires ANCESTRAL SPECIES 17 ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Euarchontoglires_A ANCESTRAL SPECIES 16 ENSGT00530000063880.a ENSGT00490000044517 ENSGT00940000161638 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000164901 ENSGT00940000171162 ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Glires ANCESTRAL SPECIES 17 ENSGT00940000161179 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Rodentia ANCESTRAL SPECIES 18 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00940000171162 ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Rodentia_B ANCESTRAL SPECIES 13 ENSGT00940000161638 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Kangaroo rat MODERN SPECIES 332 Snph (ENSDORG00000013024) Sdcbp2 (ENSDORG00000013027) ENSDORG00000026774 Nsfl1c (ENSDORG00000013031) ENSDORG00000006225 ENSDORG00000006937 Pdyn (ENSDORG00000027024) Stk35 (ENSDORG00000006763) Tgm3 (ENSDORG00000027920) Tgm6 (ENSDORG00000006504) Snrpb (ENSDORG00000029558) Tmc2 (ENSDORG00000013570) ENSDORG00000013918 ENSDORG00000024850 Idh3b (ENSDORG00000013913) Ebf4 (ENSDORG00000004139) ##22 Cpxm1 (ENSDORG00000003235) 1700020A23Rik (ENSDORG00000027106) Tmem239 (ENSDORG00000001749) Pced1a (ENSDORG00000027465) Vps16 (ENSDORG00000023158) Ptpra (ENSDORG00000012895) Mrps26 (ENSDORG00000012900) Oxt (ENSDORG00000024438) Avp (ENSDORG00000026916) Fastkd5 (ENSDORG00000029181) Ubox5 (ENSDORG00000023223) Lzts3 (ENSDORG00000023886) Ddrgk1 (ENSDORG00000025128) Itpa (ENSDORG00000016219) Slc4a11 (ENSDORG00000016220) Myomorpha ANCESTRAL SPECIES 9 ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Muroidea ANCESTRAL SPECIES 7 ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Muroidea_A ANCESTRAL SPECIES 2 ENSGT00390000007919 ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Cricetidae ANCESTRAL SPECIES 5 ENSGT00390000007919 ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Cricetinae ANCESTRAL SPECIES 1 ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000155052.e.b.b ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Chinese hamster chok1gshd MODERN SPECIES 188 Ckap2l (ENSCGRG00001010583) Il1a (ENSCGRG00001005306) IL1B (ENSCGRG00001019948) ENSCGRG00001015397 F830045P16Rik (ENSCGRG00001019806) ENSCGRG00001018326 Pdyn (ENSCGRG00001006255) Stk35 (ENSCGRG00001009561) Tgm3 (ENSCGRG00001017883) Tgm6 (ENSCGRG00001013741) Snrpb (ENSCGRG00001023046) ENSCGRG00001019697 Tmc2 (ENSCGRG00001012157) Nop56 (ENSCGRG00001019528) Idh3b (ENSCGRG00001012059) Ebf4 (ENSCGRG00001017309) ##22 Cpxm1 (ENSCGRG00001014283) 1700020A23Rik (ENSCGRG00001021320) Tmem239 (ENSCGRG00001001392) Pced1a (ENSCGRG00001019937) Vps16 (ENSCGRG00001017458) Ptpra (ENSCGRG00001014995) Mrps26 (ENSCGRG00001018911) ENSCGRG00001009214 ENSCGRG00001008948 Avp (ENSCGRG00001009090) Ubox5 (ENSCGRG00001022453) Fastkd5 (ENSCGRG00001021453) Lzts3 (ENSCGRG00001007812) Ddrgk1 (ENSCGRG00001010910) ITPA (ENSCGRG00001009380) Golden Hamster MODERN SPECIES 631 Polr1b (ENSMAUG00000010593) Chchd5 (ENSMAUG00000022068) Slc20a1 (ENSMAUG00000017860) Ckap2l (ENSMAUG00000022127) Il1a (ENSMAUG00000018533) Il1b (ENSMAUG00000017477) ENSMAUG00000018632 Pdyn (ENSMAUG00000011076) Tgm3 (ENSMAUG00000018002) Tgm6 (ENSMAUG00000021585) ENSMAUG00000007538 ENSMAUG00000020656 Tmc2 (ENSMAUG00000006671) Nop56 (ENSMAUG00000021793) Idh3b (ENSMAUG00000020105) Ebf4 (ENSMAUG00000006779) ##22 Cpxm1 (ENSMAUG00000020338) ENSMAUG00000022047 ENSMAUG00000021075 Vps16 (ENSMAUG00000010001) Ptpra (ENSMAUG00000022109) Mrps26 (ENSMAUG00000019571) ENSMAUG00000021401 Ubox5 (ENSMAUG00000019757) Fastkd5 (ENSMAUG00000020637) Lzts3 (ENSMAUG00000021395) Ddrgk1 (ENSMAUG00000022014) Itpa (ENSMAUG00000021384) Slc4a11 (ENSMAUG00000021645) ENSMAUG00000014651 ENSMAUG00000008516 Cricetidae_B ANCESTRAL SPECIES 4 ENSGT00390000007919 ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Northern American deer mouse MODERN SPECIES 17 Slc20a1 (ENSPEMG00000010382) Ckap2l (ENSPEMG00000010844) Il1a (ENSPEMG00000011300) Il1b (ENSPEMG00000011618) ENSPEMG00000028968 ENSPEMG00000030059 Sirpa (ENSPEMG00000017880) Pdyn (ENSPEMG00000013267) Stk35 (ENSPEMG00000031207) Tgm3 (ENSPEMG00000017306) Tgm6 (ENSPEMG00000014968) Snrpb (ENSPEMG00000007948) Tmc2 (ENSPEMG00000014826) ENSPEMG00000030460 Idh3b (ENSPEMG00000016045) Ebf4 (ENSPEMG00000007345) ##22 Cpxm1 (ENSPEMG00000001942) 1700020A23Rik (ENSPEMG00000025056) Tmem239 (ENSPEMG00000010668) Pced1a (ENSPEMG00000014207) Vps16 (ENSPEMG00000013167) ENSPEMG00000026020 Ptpra (ENSPEMG00000001508) Mrps26 (ENSPEMG00000010334) Oxt (ENSPEMG00000009490) Avp (ENSPEMG00000003752) Ubox5 (ENSPEMG00000018299) Fastkd5 (ENSPEMG00000017742) Lzts3 (ENSPEMG00000013505) Ddrgk1 (ENSPEMG00000009063) ENSPEMG00000014788 Prairie vole MODERN SPECIES 86 Slc20a1 (ENSMOCG00000000704) Ckap2l (ENSMOCG00000021817) Il1a (ENSMOCG00000021509) Il1b (ENSMOCG00000019969) F830045P16Rik (ENSMOCG00000018895) ENSMOCG00000001396 Pdyn (ENSMOCG00000022680) Stk35 (ENSMOCG00000005935) Tgm3 (ENSMOCG00000002913) Tgm6 (ENSMOCG00000020858) ENSMOCG00000002892 Tmc2 (ENSMOCG00000015150) ENSMOCG00000004225 ENSMOCG00000018981 Idh3b (ENSMOCG00000009379) Ebf4 (ENSMOCG00000011784) ##22 Cpxm1 (ENSMOCG00000005470) 1700020A23Rik (ENSMOCG00000002438) Tmem239 (ENSMOCG00000000098) ENSMOCG00000011698 Vps16 (ENSMOCG00000010998) Ptpra (ENSMOCG00000013827) MRPS26 (ENSMOCG00000016053) Oxt (ENSMOCG00000017703) Avp (ENSMOCG00000014821) Ubox5 (ENSMOCG00000021078) Fastkd5 (ENSMOCG00000018299) Lzts3 (ENSMOCG00000019922) Ddrgk1 (ENSMOCG00000017173) ENSMOCG00000011173 Slc4a11 (ENSMOCG00000016721) Murinae ANCESTRAL SPECIES 1 ENSGT00390000007919 ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Mus ANCESTRAL SPECIES 1 ENSGT00390000007919 ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Mus_A ANCESTRAL SPECIES ENSGT00390000007919.i ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Mus_B ANCESTRAL SPECIES 1 ENSGT00390000007919.i ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Mus_C ANCESTRAL SPECIES ENSGT00390000007919.i ENSGT00390000014879.c.a ENSGT00530000063691.a ENSGT00390000013353 ENSGT00950000182943.jb ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.eb ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Steppe mouse MODERN SPECIES 3100 Il1b (ENSMSIG00000011938) ENSMSIG00000011966 ENSMSIG00000011970 F830045P16Rik (ENSMSIG00000011980) Sirpa (ENSMSIG00000012006) Pdyn (ENSMSIG00000012464) Stk35 (ENSMSIG00000012494) Tgm3 (ENSMSIG00000012513) ENSMSIG00000012594 Tgm6 (ENSMSIG00000012611) Snrpb (ENSMSIG00000012633) Tmc2 (ENSMSIG00000012652) Nop56 (ENSMSIG00000012714) Idh3b (ENSMSIG00000012771) ENSMSIG00000012850 Ebf4 (ENSMSIG00000012856) ##22 Cpxm1 (ENSMSIG00000012969) 1700020A23Rik (ENSMSIG00000013042) Tmem239 (ENSMSIG00000013056) Vps16 (ENSMSIG00000013066) Ptpra (ENSMSIG00000013175) ENSMSIG00000013369 Mrps26 (ENSMSIG00000013383) Oxt (ENSMSIG00000013416) Avp (ENSMSIG00000013423) Ubox5 (ENSMSIG00000013436) ENSMSIG00000013450 Lzts3 (ENSMSIG00000013473) Ddrgk1 (ENSMSIG00000013480) ENSMSIG00000013514 Slc4a11 (ENSMSIG00000013565) spretus MODERN SPECIES 11 Chchd5 (MGP_SPRETEiJ_G0025202) Slc20a1 (MGP_SPRETEiJ_G0025203) Ckap2l (MGP_SPRETEiJ_G0025204) Il1a (MGP_SPRETEiJ_G0025205) F830045P16Rik (MGP_SPRETEiJ_G0025206) Il1b (MGP_SPRETEiJ_G0025207) Sirpa (MGP_SPRETEiJ_G0025208) Pdyn (MGP_SPRETEiJ_G0025209) Stk35 (MGP_SPRETEiJ_G0025210) Tgm3 (MGP_SPRETEiJ_G0025211) Tgm6 (MGP_SPRETEiJ_G0025212) Snrpb (MGP_SPRETEiJ_G0025213) Tmc2 (MGP_SPRETEiJ_G0025214) Nop56 (MGP_SPRETEiJ_G0025215) Idh3b (MGP_SPRETEiJ_G0025216) Ebf4 (MGP_SPRETEiJ_G0025217) ##22 Cpxm1 (MGP_SPRETEiJ_G0025218) MGP_SPRETEiJ_G0025219 1700020A23Rik (MGP_SPRETEiJ_G0025220) Tmem239 (MGP_SPRETEiJ_G0025221) Pced1a (MGP_SPRETEiJ_G0025222) Vps16 (MGP_SPRETEiJ_G0025223) Ptpra (MGP_SPRETEiJ_G0025224) Mrps26 (MGP_SPRETEiJ_G0025225) Oxt (MGP_SPRETEiJ_G0025226) Avp (MGP_SPRETEiJ_G0025227) Ubox5 (MGP_SPRETEiJ_G0025228) Fastkd5 (MGP_SPRETEiJ_G0025229) Lzts3 (MGP_SPRETEiJ_G0025230) Ddrgk1 (MGP_SPRETEiJ_G0025231) Itpa (MGP_SPRETEiJ_G0025232) Mouse MODERN SPECIES 11 Chchd5 (ENSMUSG00000037938) Slc20a1 (ENSMUSG00000027397) Ckap2l (ENSMUSG00000048327) Il1a (ENSMUSG00000027399) Il1b (ENSMUSG00000027398) F830045P16Rik (ENSMUSG00000043727) Sirpa (ENSMUSG00000037902) Pdyn (ENSMUSG00000027400) Stk35 (ENSMUSG00000037885) Tgm3 (ENSMUSG00000027401) Tgm6 (ENSMUSG00000027403) Snrpb (ENSMUSG00000027404) Tmc2 (ENSMUSG00000060332) Nop56 (ENSMUSG00000027405) Idh3b (ENSMUSG00000027406) Ebf4 (ENSMUSG00000053552) ##22 Cpxm1 (ENSMUSG00000027408) 1700020A23Rik (ENSMUSG00000027409) Tmem239 (ENSMUSG00000049692) Pced1a (ENSMUSG00000037773) Vps16 (ENSMUSG00000027411) Ptpra (ENSMUSG00000027303) Mrps26 (ENSMUSG00000037740) Oxt (ENSMUSG00000027301) Avp (ENSMUSG00000037727) Ubox5 (ENSMUSG00000027300) Fastkd5 (ENSMUSG00000079043) Lzts3 (ENSMUSG00000037703) Ddrgk1 (ENSMUSG00000068290) Itpa (ENSMUSG00000074797) Slc4a11 (ENSMUSG00000074796) Ryukyu mouse MODERN SPECIES 11 Chchd5 (MGP_CAROLIEiJ_G0024282) Slc20a1 (MGP_CAROLIEiJ_G0024283) Ckap2l (MGP_CAROLIEiJ_G0024284) Il1a (MGP_CAROLIEiJ_G0024285) Il1b (MGP_CAROLIEiJ_G0024286) F830045P16Rik (MGP_CAROLIEiJ_G0024287) Sirpa (MGP_CAROLIEiJ_G0024288) Pdyn (MGP_CAROLIEiJ_G0024289) Stk35 (MGP_CAROLIEiJ_G0024290) Tgm3 (MGP_CAROLIEiJ_G0024291) Tgm6 (MGP_CAROLIEiJ_G0024292) Snrpb (MGP_CAROLIEiJ_G0024293) Tmc2 (MGP_CAROLIEiJ_G0024294) Nop56 (MGP_CAROLIEiJ_G0024295) Idh3b (MGP_CAROLIEiJ_G0024296) Ebf4 (MGP_CAROLIEiJ_G0024297) ##22 Cpxm1 (MGP_CAROLIEiJ_G0024298) MGP_CAROLIEiJ_G0024299 1700020A23Rik (MGP_CAROLIEiJ_G0024300) Tmem239 (MGP_CAROLIEiJ_G0024301) Pced1a (MGP_CAROLIEiJ_G0024302) Vps16 (MGP_CAROLIEiJ_G0024303) Ptpra (MGP_CAROLIEiJ_G0024304) Mrps26 (MGP_CAROLIEiJ_G0024305) Oxt (MGP_CAROLIEiJ_G0024306) Avp (MGP_CAROLIEiJ_G0024307) Ubox5 (MGP_CAROLIEiJ_G0024308) Fastkd5 (MGP_CAROLIEiJ_G0024309) Lzts3 (MGP_CAROLIEiJ_G0024310) Ddrgk1 (MGP_CAROLIEiJ_G0024311) Itpa (MGP_CAROLIEiJ_G0024312) Shrew mouse MODERN SPECIES 16 Chchd5 (MGP_PahariEiJ_G0025727) Slc20a1 (MGP_PahariEiJ_G0025728) Ckap2l (MGP_PahariEiJ_G0025729) Il1a (MGP_PahariEiJ_G0025730) Il1b (MGP_PahariEiJ_G0025731) F830045P16Rik (MGP_PahariEiJ_G0025732) Sirpa (MGP_PahariEiJ_G0025733) Pdyn (MGP_PahariEiJ_G0025734) Stk35 (MGP_PahariEiJ_G0025735) Tgm3 (MGP_PahariEiJ_G0025736) Tgm6 (MGP_PahariEiJ_G0025737) Snrpb (MGP_PahariEiJ_G0025738) Tmc2 (MGP_PahariEiJ_G0025739) Nop56 (MGP_PahariEiJ_G0025740) Idh3b (MGP_PahariEiJ_G0025741) Ebf4 (MGP_PahariEiJ_G0025742) ##22 Cpxm1 (MGP_PahariEiJ_G0025743) MGP_PahariEiJ_G0025744 1700020A23Rik (MGP_PahariEiJ_G0025745) Tmem239 (MGP_PahariEiJ_G0025746) Pced1a (MGP_PahariEiJ_G0025747) Vps16 (MGP_PahariEiJ_G0025748) Ptpra (MGP_PahariEiJ_G0025749) Mrps26 (MGP_PahariEiJ_G0025750) Oxt (MGP_PahariEiJ_G0025751) Avp (MGP_PahariEiJ_G0025752) MGP_PahariEiJ_G0025753 MGP_PahariEiJ_G0025754 Lzts3 (MGP_PahariEiJ_G0025755) Ddrgk1 (MGP_PahariEiJ_G0025756) Itpa (MGP_PahariEiJ_G0025757) Rat MODERN SPECIES 13 Il1a (ENSRNOG00000004575) Il1b (ENSRNOG00000004649) Sirpb3 (ENSRNOG00000026061) Sirpa (ENSRNOG00000004763) Pdyn (ENSRNOG00000026036) AABR07053716.1 (ENSRNOG00000029173) Stk35 (ENSRNOG00000006002) Tgm3 (ENSRNOG00000006753) Tgm6 (ENSRNOG00000006830) Snrpb (ENSRNOG00000006961) Tmc2 (ENSRNOG00000007017) Nop56 (ENSRNOG00000007128) Idh3b (ENSRNOG00000007316) AABR07053734.1 (ENSRNOG00000031034) Rps12l3 (ENSRNOG00000033913) Ebf4 (ENSRNOG00000007408) ##22 Cpxm1 (ENSRNOG00000021220) Tmem239 (ENSRNOG00000047004) Pced1a (ENSRNOG00000021221) Vps16 (ENSRNOG00000021222) Ptpra (ENSRNOG00000021223) Mrps26 (ENSRNOG00000021224) Oxt (ENSRNOG00000021225) Avp (ENSRNOG00000021229) Ubox5 (ENSRNOG00000021230) Fastkd5 (ENSRNOG00000053270) Lzts3 (ENSRNOG00000021231) Ddrgk1 (ENSRNOG00000021232) Itpa (ENSRNOG00000021233) Slc4a11 (ENSRNOG00000021234) Dnaaf9 (ENSRNOG00000021237) Upper Galilee mountains blind mole rat MODERN SPECIES 1686 Stk35 (ENSNGAG00000018787) Tgm3 (ENSNGAG00000009705) Tgm6 (ENSNGAG00000008804) Snrpb (ENSNGAG00000012051) ENSNGAG00000015321 ENSNGAG00000014327 Tmc2 (ENSNGAG00000020836) ENSNGAG00000020493 ENSNGAG00000019819 Idh3b (ENSNGAG00000016651) Ebf4 (ENSNGAG00000010179) ##22 Cpxm1 (ENSNGAG00000020071) Tmem239 (ENSNGAG00000014119) Pced1a (ENSNGAG00000001267) Vps16 (ENSNGAG00000019525) Ptpra (ENSNGAG00000015467) Mrps26 (ENSNGAG00000013778) Oxt (ENSNGAG00000010896) Avp (ENSNGAG00000007700) Ubox5 (ENSNGAG00000020965) Lzts3 (ENSNGAG00000018130) Ddrgk1 (ENSNGAG00000000119) Itpa (ENSNGAG00000016121) Slc4a11 (ENSNGAG00000018270) Dnaaf9 (ENSNGAG00000005585) ENSNGAG00000015989 Lesser Egyptian jerboa MODERN SPECIES 84 ENSJJAG00000004224 Tgm3 (ENSJJAG00000018372) Tgm6 (ENSJJAG00000012854) Snrpb (ENSJJAG00000024170) Tmc2 (ENSJJAG00000009946) Ebf4 (ENSJJAG00000022459) ##22 Cpxm1 (ENSJJAG00000003720) Tmem239 (ENSJJAG00000020111) Ptpra (ENSJJAG00000015717) Mrps26 (ENSJJAG00000021092) Oxt (ENSJJAG00000023461) Avp (ENSJJAG00000024270) Ubox5 (ENSJJAG00000005580) ENSJJAG00000016818 Fastkd5 (ENSJJAG00000018838) Itpa (ENSJJAG00000019256) Slc4a11 (ENSJJAG00000023904) Dnaaf9 (ENSJJAG00000010931) Atrn (ENSJJAG00000013554) Gfra4 (ENSJJAG00000023836) Adam33 (ENSJJAG00000018028) Rodentia_A ANCESTRAL SPECIES 17 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00940000171162 ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Hystricomorpha ANCESTRAL SPECIES 10 ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00940000171162 ENSGT00960000186656.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Hystricomorpha_a ANCESTRAL SPECIES 8 ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Hystricomorpha_b ANCESTRAL SPECIES 31 ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Long-tailed chinchilla MODERN SPECIES 122 ENSCLAG00000016105 PCDHB7 (ENSCLAG00000011655) ENSCLAG00000012211 PCDHB4 (ENSCLAG00000012265) PCDHB2 (ENSCLAG00000012148) ENSCLAG00000013436 ENSCLAG00000013550 PDYN (ENSCLAG00000010082) STK35 (ENSCLAG00000010739) TGM3 (ENSCLAG00000010817) TGM6 (ENSCLAG00000012346) SNRPB (ENSCLAG00000012442) TMC2 (ENSCLAG00000013446) NOP56 (ENSCLAG00000013816) IDH3B (ENSCLAG00000012613) EBF4 (ENSCLAG00000016129) ##22 CPXM1 (ENSCLAG00000010049) ENSCLAG00000009947 TMEM239 (ENSCLAG00000010005) PCED1A (ENSCLAG00000010239) VPS16 (ENSCLAG00000010899) PTPRA (ENSCLAG00000014599) MRPS26 (ENSCLAG00000011719) UBOX5 (ENSCLAG00000012136) FASTKD5 (ENSCLAG00000017812) LZTS3 (ENSCLAG00000010167) DDRGK1 (ENSCLAG00000012959) ITPA (ENSCLAG00000012396) SLC4A11 (ENSCLAG00000012612) DNAAF9 (ENSCLAG00000013491) ENSCLAG00000012573 Degu MODERN SPECIES 101 ENSODEG00000006224 ENSODEG00000004634 PDYN (ENSODEG00000004508) STK35 (ENSODEG00000004809) TGM3 (ENSODEG00000007471) TGM6 (ENSODEG00000008085) ENSODEG00000004305 TMC2 (ENSODEG00000004874) ENSODEG00000005500 ENSODEG00000005708 IDH3B (ENSODEG00000006040) EBF4 (ENSODEG00000005079) ##22 CPXM1 (ENSODEG00000005511) ENSODEG00000004687 PCED1A (ENSODEG00000005153) VPS16 (ENSODEG00000004474) PTPRA (ENSODEG00000005651) MRPS26 (ENSODEG00000004501) ENSODEG00000004605 AVP (ENSODEG00000006589) UBOX5 (ENSODEG00000006821) FASTKD5 (ENSODEG00000005773) ENSODEG00000019287 LZTS3 (ENSODEG00000006348) DDRGK1 (ENSODEG00000005502) ITPA (ENSODEG00000005202) SLC4A11 (ENSODEG00000006000) Guinea pig MODERN SPECIES 8 PLXNB1 (ENSCPOG00000011366) ENSCPOG00000038486 ENSCPOG00000022121 ENSCPOG00000021429 ENSCPOG00000025142 ENSCPOG00000019652 ENSCPOG00000033569 PDYN (ENSCPOG00000024291) STK35 (ENSCPOG00000002242) TGM3 (ENSCPOG00000015307) TGM6 (ENSCPOG00000015309) SNRPB (ENSCPOG00000039408) TMC2 (ENSCPOG00000015312) NOP56 (ENSCPOG00000015315) IDH3B (ENSCPOG00000015319) EBF4 (ENSCPOG00000004862) ##22 CPXM1 (ENSCPOG00000011936) PCED1A (ENSCPOG00000025475) VPS16 (ENSCPOG00000003602) PTPRA (ENSCPOG00000020873) MRPS26 (ENSCPOG00000037912) ENSCPOG00000001717 AVP (ENSCPOG00000023592) FASTKD5 (ENSCPOG00000023356) UBOX5 (ENSCPOG00000020493) LZTS3 (ENSCPOG00000034395) DDRGK1 (ENSCPOG00000001272) ITPA (ENSCPOG00000039557) SLC4A11 (ENSCPOG00000001277) DNAAF9 (ENSCPOG00000038300) ATRN (ENSCPOG00000007193) Naked mole-rat female MODERN SPECIES 6 ENSHGLG00000036341 ENSHGLG00000041115 ENSHGLG00000006371 ENSHGLG00000036503 ENSHGLG00000037296 ENSHGLG00000008095 ENSHGLG00000034900 STK35 (ENSHGLG00000049056) TGM3 (ENSHGLG00000012294) ENSHGLG00000044597 TGM6 (ENSHGLG00000012751) ENSHGLG00000036511 TMC2 (ENSHGLG00000017324) NOP56 (ENSHGLG00000015992) IDH3B (ENSHGLG00000015582) EBF4 (ENSHGLG00000015872) ##22 ENSHGLG00000005535 CPXM1 (ENSHGLG00000009390) TMEM239 (ENSHGLG00000006404) PCED1A (ENSHGLG00000007166) VPS16 (ENSHGLG00000009537) ENSHGLG00000015648 PTPRA (ENSHGLG00000013139) GNRH2 (ENSHGLG00000048134) MRPS26 (ENSHGLG00000041915) ENSHGLG00000036143 ENSHGLG00000049775 ENSHGLG00000042720 ENSHGLG00000039750 ITPA (ENSHGLG00000035385) ENSHGLG00000033820 Sciuridae ANCESTRAL SPECIES 13 ENSGT00940000161179 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a.a.a.a ENSGT00390000004511.d.a.a.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Marmotini ANCESTRAL SPECIES 5 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.x.b.a.a ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.x.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a.a.a.a.a ENSGT00390000004511.d.a.a.b ENSGT00390000004511.d.a.a.a.a.a.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b Marmotini_b ANCESTRAL SPECIES 18 ENSGT00520000055567.a.a.a ENSGT00960000186656.a.a.a.a.a.b.x.b.b ENSGT00960000186656.a.a.a.a.a.b.w ENSGT00960000186656.a.a.a.a.b ENSGT00940000171162 ENSGT00960000186656.a.a.a.a.a.b.x.b.a.a ENSGT00960000186656.a.a.a.a.a.b.x.a ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.b.b ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a.a.a.a.a ENSGT00390000004511.d.a.a.b ENSGT00390000004511.d.a.a.a.a.a.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b Squirrel MODERN SPECIES 85 SDCBP2 (ENSSTOG00000009872) ENSSTOG00000012646 NSFL1C (ENSSTOG00000010569) ENSSTOG00000028271 ENSSTOG00000026462 ENSSTOG00000023767 ENSSTOG00000020979 PDYN (ENSSTOG00000022694) STK35 (ENSSTOG00000024262) TGM3 (ENSSTOG00000005367) TGM6 (ENSSTOG00000008836) ENSSTOG00000027821 TMC2 (ENSSTOG00000012485) NOP56 (ENSSTOG00000012503) IDH3B (ENSSTOG00000012515) EBF4 (ENSSTOG00000016352) ##22 CPXM1 (ENSSTOG00000016354) ENSSTOG00000023115 TMEM239 (ENSSTOG00000024083) PCED1A (ENSSTOG00000016356) VPS16 (ENSSTOG00000016357) PTPRA (ENSSTOG00000023551) MRPS26 (ENSSTOG00000026786) ENSSTOG00000030242 ENSSTOG00000015044 ENSSTOG00000026916 ENSSTOG00000023996 AVP (ENSSTOG00000023202) UBOX5 (ENSSTOG00000019785) LZTS3 (ENSSTOG00000006427) DDRGK1 (ENSSTOG00000006435) Arctic ground squirrel MODERN SPECIES 435 PDYN (ENSUPAG00010023368) STK35 (ENSUPAG00010023369) TGM3 (ENSUPAG00010023370) TGM6 (ENSUPAG00010023371) ENSUPAG00010023373 TMC2 (ENSUPAG00010023374) NOP56 (ENSUPAG00010023375) IDH3B (ENSUPAG00010023381) EBF4 (ENSUPAG00010023382) ##22 CPXM1 (ENSUPAG00010023383) C20orf141 (ENSUPAG00010023384) TMEM239 (ENSUPAG00010023385) PCED1A (ENSUPAG00010023386) VPS16 (ENSUPAG00010023387) PTPRA (ENSUPAG00010023388) GNRH2 (ENSUPAG00010023389) MRPS26 (ENSUPAG00010023390) ENSUPAG00010023391 ENSUPAG00010023392 ENSUPAG00010023393 ENSUPAG00010023394 AVP (ENSUPAG00010023395) UBOX5 (ENSUPAG00010023396) FASTKD5 (ENSUPAG00010023397) Alpin marmot MODERN SPECIES ENSMMMG00000023868 ENSMMMG00000023876 ENSMMMG00000023877 ENSMMMG00000023880 ENSMMMG00000023881 ENSMMMG00000023882 PDYN (ENSMMMG00000023883) STK35 (ENSMMMG00000023884) TGM3 (ENSMMMG00000023885) TGM6 (ENSMMMG00000023886) SNRPB (ENSMMMG00000023887) TMC2 (ENSMMMG00000023888) ENSMMMG00000023889 ENSMMMG00000023895 IDH3B (ENSMMMG00000023896) EBF4 (ENSMMMG00000023897) ##22 CPXM1 (ENSMMMG00000023898) C20orf141 (ENSMMMG00000023899) TMEM239 (ENSMMMG00000023900) PCED1A (ENSMMMG00000023901) VPS16 (ENSMMMG00000023902) ENSMMMG00000023903 PTPRA (ENSMMMG00000023904) GNRH2 (ENSMMMG00000023905) MRPS26 (ENSMMMG00000023906) ENSMMMG00000023908 ENSMMMG00000023911 AVP (ENSMMMG00000023912) ENSMMMG00000023913 UBOX5 (ENSMMMG00000023914) FASTKD5 (ENSMMMG00000023915) Eurasian red squirrel MODERN SPECIES 11 SIRPB2 (ENSSVLG00005011887) ENSSVLG00005011822 ENSSVLG00005011724 ENSSVLG00005011661 ENSSVLG00005010948 ENSSVLG00005010828 ENSSVLG00005010761 PDYN (ENSSVLG00005010701) STK35 (ENSSVLG00005010658) TGM3 (ENSSVLG00005010540) TGM6 (ENSSVLG00005010351) ENSSVLG00005010216 TMC2 (ENSSVLG00005010104) NOP56 (ENSSVLG00005010016) IDH3B (ENSSVLG00005009944) EBF4 (ENSSVLG00005009723) ##22 CPXM1 (ENSSVLG00005009609) C20orf141 (ENSSVLG00005009574) TMEM239 (ENSSVLG00005009555) PCED1A (ENSSVLG00005009512) VPS16 (ENSSVLG00005009245) PTPRA (ENSSVLG00005009119) GNRH2 (ENSSVLG00005009052) MRPS26 (ENSSVLG00005009025) ENSSVLG00005008985 ENSSVLG00005008922 ENSSVLG00005008884 ENSSVLG00005008834 ENSSVLG00005008791 AVP (ENSSVLG00005008767) UBOX5 (ENSSVLG00005008732) Lagomorpha ANCESTRAL SPECIES 67 ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000004511.d.a.b ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 ENSGT00390000003692 Rabbit MODERN SPECIES 15 NSFL1C (ENSOCUG00000012745) SIRPB2 (ENSOCUG00000012752) ENSOCUG00000029656 ENSOCUG00000025546 ENSOCUG00000026745 ENSOCUG00000023941 PDYN (ENSOCUG00000005246) STK35 (ENSOCUG00000000907) TGM3 (ENSOCUG00000001114) TGM6 (ENSOCUG00000014031) ENSOCUG00000014042 ENSOCUG00000006902 TMC2 (ENSOCUG00000014078) NOP56 (ENSOCUG00000014960) IDH3B (ENSOCUG00000024051) EBF4 (ENSOCUG00000023917) ##22 CPXM1 (ENSOCUG00000006186) ENSOCUG00000007314 PCED1A (ENSOCUG00000014939) VPS16 (ENSOCUG00000012371) PTPRA (ENSOCUG00000021376) ENSOCUG00000001769 ENSOCUG00000032897 MRPS26 (ENSOCUG00000012218) ENSOCUG00000008352 UBOX5 (ENSOCUG00000026346) LZTS3 (ENSOCUG00000004066) DDRGK1 (ENSOCUG00000012618) ITPA (ENSOCUG00000004070) SLC4A11 (ENSOCUG00000004077) DNAAF9 (ENSOCUG00000025410) Pika MODERN SPECIES 5098 EBF4 (ENSOPRG00000013703) ##22 Tree shrew MODERN SPECIES 5015 ENSTBEG00000016671 PDYN (ENSTBEG00000017220) ENSTBEG00000017296 TGM3 (ENSTBEG00000017304) TGM6 (ENSTBEG00000009836) SNRPB (ENSTBEG00000010040) TMC2 (ENSTBEG00000010623) NOP56 (ENSTBEG00000011249) IDH3B (ENSTBEG00000011579) ENSTBEG00000011866 ##22 CPXM1 (ENSTBEG00000012173) PCED1A (ENSTBEG00000012804) VPS16 (ENSTBEG00000012867) Primates ANCESTRAL SPECIES 17 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Haplorrhini ANCESTRAL SPECIES 13 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Tarsier DUPLICATION Tarsier MODERN SPECIES 1794 ENSTSYG00000030931 ##22 ENSTSYG00000031417 ##22 ENSTSYG00000032743 CPXM1 (ENSTSYG00000014344) Tarsier MODERN SPECIES 1794 ENSTSYG00000030931 ##22 ENSTSYG00000031417 ##22 ENSTSYG00000032743 CPXM1 (ENSTSYG00000014344) Simiiformes ANCESTRAL SPECIES 18 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Platyrrhini ANCESTRAL SPECIES 11 ENSGT00520000055567.a.a.a.e.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a.l ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896.g ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453.j ENSGT01050000247620 ENSGT00390000008453.i ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 Cebidae ANCESTRAL SPECIES 13 ENSGT00520000055567.a.a.a.e.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a.l ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896.g ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453.j ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Marmoset MODERN SPECIES 17 ENSCJAG00000020908 ENSCJAG00000020931 SIRPD (ENSCJAG00000064285) ENSCJAG00000043683 ENSCJAG00000078130 ENSCJAG00000074428 ENSCJAG00000046439 ENSCJAG00000020939 PDYN (ENSCJAG00000073299) STK35 (ENSCJAG00000020949) TGM6 (ENSCJAG00000020950) ENSCJAG00000020971 TMC2 (ENSCJAG00000020990) NOP56 (ENSCJAG00000020999) IDH3B (ENSCJAG00000021002) EBF4 (ENSCJAG00000021027) ##22 CPXM1 (ENSCJAG00000021048) ENSCJAG00000074099 TMEM239 (ENSCJAG00000021046) PCED1A (ENSCJAG00000021056) VPS16 (ENSCJAG00000021065) PTPRA (ENSCJAG00000021075) ENSCJAG00000082070 GNRH2 (ENSCJAG00000021086) MRPS26 (ENSCJAG00000021090) OXT (ENSCJAG00000074925) AVP (ENSCJAG00000021094) UBOX5 (ENSCJAG00000021095) LZTS3 (ENSCJAG00000047589) DDRGK1 (ENSCJAG00000021106) ITPA (ENSCJAG00000021114) Cebidae_a ANCESTRAL SPECIES 2 ENSGT00520000055567.a.a.a.e.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a.l ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896.g ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453.j ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Capuchin MODERN SPECIES 328 STK35 (ENSCCAG00000022994) TGM3 (ENSCCAG00000032460) TGM6 (ENSCCAG00000025799) SNRPB (ENSCCAG00000026002) ENSCCAG00000030974 ZNF343 (ENSCCAG00000028537) TMC2 (ENSCCAG00000008196) NOP56 (ENSCCAG00000023832) IDH3B (ENSCCAG00000036317) EBF4 (ENSCCAG00000032903) ##22 ENSCCAG00000027539 CPXM1 (ENSCCAG00000035733) C20orf141 (ENSCCAG00000034249) TMEM239 (ENSCCAG00000019930) PCED1A (ENSCCAG00000027769) VPS16 (ENSCCAG00000028163) PTPRA (ENSCCAG00000023189) GNRH2 (ENSCCAG00000000051) ENSCCAG00000028201 OXT (ENSCCAG00000032860) AVP (ENSCCAG00000024006) UBOX5 (ENSCCAG00000020530) LZTS3 (ENSCCAG00000035824) DDRGK1 (ENSCCAG00000021115) ITPA (ENSCCAG00000022878) Bolivian squirrel monkey MODERN SPECIES 182 SIRPB2 (ENSSBOG00000021604) SIRPD (ENSSBOG00000031734) ENSSBOG00000034746 ENSSBOG00000022308 ENSSBOG00000034147 PDYN (ENSSBOG00000030137) STK35 (ENSSBOG00000027022) TGM3 (ENSSBOG00000020728) TGM6 (ENSSBOG00000028017) SNRPB (ENSSBOG00000027310) ENSSBOG00000024454 ENSSBOG00000029706 TMC2 (ENSSBOG00000027555) NOP56 (ENSSBOG00000023623) IDH3B (ENSSBOG00000033226) EBF4 (ENSSBOG00000028938) ##22 CPXM1 (ENSSBOG00000027100) ENSSBOG00000011662 C20orf141 (ENSSBOG00000017171) TMEM239 (ENSSBOG00000020753) PCED1A (ENSSBOG00000028006) ENSSBOG00000012725 PTPRA (ENSSBOG00000016941) GNRH2 (ENSSBOG00000020288) MRPS26 (ENSSBOG00000020407) OXT (ENSSBOG00000012867) UBOX5 (ENSSBOG00000031934) LZTS3 (ENSSBOG00000021876) DDRGK1 (ENSSBOG00000020146) ITPA (ENSSBOG00000033221) SLC4A11 (ENSSBOG00000033057) Mas night monkey MODERN SPECIES 1017 NSFL1C (ENSANAG00000036134) SIRPB2 (ENSANAG00000035716) SIRPD (ENSANAG00000034065) ENSANAG00000029441 ENSANAG00000035617 ENSANAG00000036610 PDYN (ENSANAG00000009836) ENSANAG00000027630 TGM3 (ENSANAG00000038512) TGM6 (ENSANAG00000027021) ENSANAG00000024443 ZNF343 (ENSANAG00000009075) TMC2 (ENSANAG00000030091) NOP56 (ENSANAG00000033253) IDH3B (ENSANAG00000032058) EBF4 (ENSANAG00000022950) ##22 CPXM1 (ENSANAG00000024176) C20orf141 (ENSANAG00000035344) TMEM239 (ENSANAG00000035366) PCED1A (ENSANAG00000032335) VPS16 (ENSANAG00000021734) PTPRA (ENSANAG00000037685) ENSANAG00000027324 ENSANAG00000033577 OXT (ENSANAG00000037836) AVP (ENSANAG00000037057) UBOX5 (ENSANAG00000025059) LZTS3 (ENSANAG00000036389) DDRGK1 (ENSANAG00000026902) ITPA (ENSANAG00000027150) SLC4A11 (ENSANAG00000026117) Catarrhini ANCESTRAL SPECIES 19 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00910000147235 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Cercopithecidae ANCESTRAL SPECIES 16 ENSGT00960000186656.a.a.a.a.a.b.l.a ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00910000147235 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Rhinopithecus ANCESTRAL SPECIES 58 ENSGT00960000186656.a.a.a.a.a.b.l.b.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00910000147235 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Black snub-nosed monkey MODERN SPECIES 419 SIRPG (ENSRBIG00000029813) ENSRBIG00000029667 ENSRBIG00000035518 PDYN (ENSRBIG00000033945) STK35 (ENSRBIG00000042621) TGM3 (ENSRBIG00000033078) TGM6 (ENSRBIG00000027342) SNRPB (ENSRBIG00000040505) ENSRBIG00000038098 ZNF343 (ENSRBIG00000042785) TMC2 (ENSRBIG00000043354) NOP56 (ENSRBIG00000030689) IDH3B (ENSRBIG00000024462) EBF4 (ENSRBIG00000041117) ##22 ENSRBIG00000037696 CPXM1 (ENSRBIG00000043940) C20orf141 (ENSRBIG00000035456) TMEM239 (ENSRBIG00000044922) PCED1A (ENSRBIG00000044930) VPS16 (ENSRBIG00000040595) PTPRA (ENSRBIG00000025787) GNRH2 (ENSRBIG00000032214) MRPS26 (ENSRBIG00000031683) OXT (ENSRBIG00000032307) AVP (ENSRBIG00000042065) UBOX5 (ENSRBIG00000030169) LZTS3 (ENSRBIG00000040324) DDRGK1 (ENSRBIG00000037650) ITPA (ENSRBIG00000031680) Golden snub-nosed monkey MODERN SPECIES 2118 ENSRROG00000035911 ENSRROG00000038191 PDYN (ENSRROG00000042871) STK35 (ENSRROG00000029460) TGM3 (ENSRROG00000045750) TGM6 (ENSRROG00000007440) ENSRROG00000001980 SNRPB (ENSRROG00000036094) ZNF343 (ENSRROG00000029443) TMC2 (ENSRROG00000013022) NOP56 (ENSRROG00000020071) IDH3B (ENSRROG00000025649) ENSRROG00000030818 EBF4 (ENSRROG00000042792) ##22 CPXM1 (ENSRROG00000031677) C20orf141 (ENSRROG00000045663) TMEM239 (ENSRROG00000040372) PCED1A (ENSRROG00000033585) VPS16 (ENSRROG00000042349) PTPRA (ENSRROG00000038365) GNRH2 (ENSRROG00000038418) MRPS26 (ENSRROG00000039447) OXT (ENSRROG00000031112) AVP (ENSRROG00000031119) UBOX5 (ENSRROG00000000087) LZTS3 (ENSRROG00000032673) DDRGK1 (ENSRROG00000032165) ITPA (ENSRROG00000034456) SLC4A11 (ENSRROG00000040510) Cercopithecinae ANCESTRAL SPECIES 19 ENSGT00960000186656.a.a.a.a.a.b.l.a ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00910000147235 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Vervet Monkey MODERN SPECIES 11 SIRPD (ENSCSAG00000010673) ENSCSAG00000010682 ENSCSAG00000010716 SIRPG (ENSCSAG00000010729) ENSCSAG00000010732 ENSCSAG00000010742 PDYN (ENSCSAG00000010750) STK35 (ENSCSAG00000010755) TGM3 (ENSCSAG00000010799) TGM6 (ENSCSAG00000010830) SNRPB (ENSCSAG00000010840) ENSCSAG00000010844 TMC2 (ENSCSAG00000010896) NOP56 (ENSCSAG00000010955) IDH3B (ENSCSAG00000010969) EBF4 (ENSCSAG00000010974) ##22 CPXM1 (ENSCSAG00000010982) SYNDIG1 (ENSCSAG00000010985) CST5 (ENSCSAG00000010994) ENSCSAG00000011001 ENSCSAG00000011012 CST9L (ENSCSAG00000011017) ENSCSAG00000011022 ENSCSAG00000011025 CST3 (ENSCSAG00000011027) ENSCSAG00000011032 ENSCSAG00000011037 GZF1 (ENSCSAG00000011054) NXT1 (ENSCSAG00000018678) CD93 (ENSCSAG00000011058) THBD (ENSCSAG00000018677) Cercopithecinae_a ANCESTRAL SPECIES 18 ENSGT00960000186656.a.a.a.a.a.b.l.a ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00910000147235 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Cercopithecinae_b ANCESTRAL SPECIES 12 ENSGT00960000186656.a.a.a.a.a.b.l.a ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00910000147235 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Olive baboon MODERN SPECIES 7 NSFL1C (ENSPANG00000013448) SIRPB2 (ENSPANG00000000407) ENSPANG00000029852 ENSPANG00000042302 ENSPANG00000045053 PDYN (ENSPANG00000045629) STK35 (ENSPANG00000004322) TGM3 (ENSPANG00000021244) ENSPANG00000013447 TGM6 (ENSPANG00000003905) SNRPB (ENSPANG00000020362) ZNF343 (ENSPANG00000013446) TMC2 (ENSPANG00000016040) NOP56 (ENSPANG00000023584) IDH3B (ENSPANG00000023587) EBF4 (ENSPANG00000007524) ##22 CPXM1 (ENSPANG00000003904) C20orf141 (ENSPANG00000021243) TMEM239 (ENSPANG00000024848) PCED1A (ENSPANG00000018664) VPS16 (ENSPANG00000018665) PTPRA (ENSPANG00000018667) ENSPANG00000004889 OXT (ENSPANG00000018780) AVP (ENSPANG00000024265) UBOX5 (ENSPANG00000023848) FASTKD5 (ENSPANG00000048763) LZTS3 (ENSPANG00000045050) DDRGK1 (ENSPANG00000018779) ITPA (ENSPANG00000037644) SLC4A11 (ENSPANG00000006862) Cercopithecinae_d ANCESTRAL SPECIES 2 ENSGT00960000186656.a.a.a.a.a.b.l.a ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00910000147235 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Sooty mangabey MODERN SPECIES 602 SIRPG (ENSCATG00000040190) ENSCATG00000040461 ENSCATG00000044290 PDYN (ENSCATG00000034072) STK35 (ENSCATG00000029759) ENSCATG00000031993 TGM3 (ENSCATG00000040841) TGM6 (ENSCATG00000032666) ENSCATG00000030342 SNRPB (ENSCATG00000030230) ZNF343 (ENSCATG00000035883) TMC2 (ENSCATG00000040490) NOP56 (ENSCATG00000031167) IDH3B (ENSCATG00000044692) ENSCATG00000044630 EBF4 (ENSCATG00000024368) ##22 CPXM1 (ENSCATG00000031898) C20orf141 (ENSCATG00000030817) TMEM239 (ENSCATG00000044765) PCED1A (ENSCATG00000033865) VPS16 (ENSCATG00000038232) PTPRA (ENSCATG00000013660) GNRH2 (ENSCATG00000021226) MRPS26 (ENSCATG00000042895) OXT (ENSCATG00000039403) AVP (ENSCATG00000039090) UBOX5 (ENSCATG00000021521) LZTS3 (ENSCATG00000044716) DDRGK1 (ENSCATG00000041602) ITPA (ENSCATG00000041788) SLC4A11 (ENSCATG00000030554) Drill MODERN SPECIES 77 ENSMLEG00000039704 SIRPG (ENSMLEG00000030528) ENSMLEG00000036013 ENSMLEG00000032890 PDYN (ENSMLEG00000028747) STK35 (ENSMLEG00000027916) TGM3 (ENSMLEG00000030273) TGM6 (ENSMLEG00000031147) SNRPB (ENSMLEG00000022346) ENSMLEG00000042288 ZNF343 (ENSMLEG00000037595) TMC2 (ENSMLEG00000043451) NOP56 (ENSMLEG00000020816) IDH3B (ENSMLEG00000040492) ENSMLEG00000031773 ENSMLEG00000043603 ##22 CPXM1 (ENSMLEG00000032091) C20orf141 (ENSMLEG00000028498) TMEM239 (ENSMLEG00000035749) PCED1A (ENSMLEG00000026689) VPS16 (ENSMLEG00000008392) PTPRA (ENSMLEG00000033229) GNRH2 (ENSMLEG00000031186) OXT (ENSMLEG00000037934) UBOX5 (ENSMLEG00000043043) LZTS3 (ENSMLEG00000040437) DDRGK1 (ENSMLEG00000041186) ITPA (ENSMLEG00000040606) SLC4A11 (ENSMLEG00000026373) DNAAF9 (ENSMLEG00000029600) ENSMLEG00000026517 Macaca ANCESTRAL SPECIES 16 ENSGT00960000186656.a.a.a.a.a.b.l.a ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000164774 ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00910000147235 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Pig-tailed macaque MODERN SPECIES 574 SIRPG (ENSMNEG00000028495) ENSMNEG00000028514 ENSMNEG00000018475 PDYN (ENSMNEG00000039135) STK35 (ENSMNEG00000038623) TGM3 (ENSMNEG00000018311) TGM6 (ENSMNEG00000037273) ENSMNEG00000041027 SNRPB (ENSMNEG00000027954) ZNF343 (ENSMNEG00000044885) TMC2 (ENSMNEG00000036362) NOP56 (ENSMNEG00000033186) IDH3B (ENSMNEG00000039596) ENSMNEG00000011376 EBF4 (ENSMNEG00000042057) ##22 CPXM1 (ENSMNEG00000034070) C20orf141 (ENSMNEG00000030475) TMEM239 (ENSMNEG00000045200) PCED1A (ENSMNEG00000044351) VPS16 (ENSMNEG00000037347) PTPRA (ENSMNEG00000030257) GNRH2 (ENSMNEG00000032312) MRPS26 (ENSMNEG00000033521) OXT (ENSMNEG00000040501) AVP (ENSMNEG00000037006) UBOX5 (ENSMNEG00000042470) LZTS3 (ENSMNEG00000022192) DDRGK1 (ENSMNEG00000029867) ITPA (ENSMNEG00000032055) SLC4A11 (ENSMNEG00000000904) Macaca_a ANCESTRAL SPECIES 18 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.a ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT01100000263493.a.a.a.b.b.a.b.a.b ENSGT01030000234607.A.a.b.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 Rhesus MODERN SPECIES 1 SIRPB2 (ENSMMUG00000015993) ENSMMUG00000061976 ENSMMUG00000037684 SIRPG (ENSMMUG00000018473) ENSMMUG00000062541 ENSMMUG00000018474 PDYN (ENSMMUG00000009984) STK35 (ENSMMUG00000004305) TGM3 (ENSMMUG00000007819) TGM6 (ENSMMUG00000063469) SNRPB (ENSMMUG00000010050) ZNF343 (ENSMMUG00000010054) TMC2 (ENSMMUG00000013889) NOP56 (ENSMMUG00000013888) IDH3B (ENSMMUG00000021328) EBF4 (ENSMMUG00000021331) ##22 CPXM1 (ENSMMUG00000021332) C10H20orf141 (ENSMMUG00000009331) PCED1A (ENSMMUG00000005200) VPS16 (ENSMMUG00000005204) PTPRA (ENSMMUG00000005878) GNRH2 (ENSMMUG00000005890) MRPS26 (ENSMMUG00000063622) OXT (ENSMMUG00000010678) AVP (ENSMMUG00000051923) ENSMMUG00000063464 FASTKD5 (ENSMMUG00000002982) UBOX5 (ENSMMUG00000043281) LZTS3 (ENSMMUG00000010028) DDRGK1 (ENSMMUG00000063520) ITPA (ENSMMUG00000061481) Crab-eating macaque MODERN SPECIES 1 ENSMFAG00000041667 ENSMFAG00000040668 RPL29 (ENSMFAG00000065377) ENSMFAG00000000677 SIRPA (ENSMFAG00000042179) PDYN (ENSMFAG00000059850) STK35 (ENSMFAG00000017416) TGM3 (ENSMFAG00000001294) TGM6 (ENSMFAG00000028501) SNRPB (ENSMFAG00000042411) ZNF343 (ENSMFAG00000033379) TMC2 (ENSMFAG00000044034) NOP56 (ENSMFAG00000041293) IDH3B (ENSMFAG00000031070) ENSMFAG00000056579 EBF4 (ENSMFAG00000032117) ##22 CPXM1 (ENSMFAG00000003356) C20orf141 (ENSMFAG00000003999) TMEM239 (ENSMFAG00000034564) PCED1A (ENSMFAG00000032941) VPS16 (ENSMFAG00000033888) PTPRA (ENSMFAG00000033743) GNRH2 (ENSMFAG00000065333) MRPS26 (ENSMFAG00000029490) OXT (ENSMFAG00000039947) AVP (ENSMFAG00000038251) ENSMFAG00000048486 FASTKD5 (ENSMFAG00000059621) UBOX5 (ENSMFAG00000041627) LZTS3 (ENSMFAG00000041543) DDRGK1 (ENSMFAG00000037803) Hominoidea ANCESTRAL SPECIES 17 ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.d ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00910000147235 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Gibbon MODERN SPECIES 3 SIRPD (ENSNLEG00000009332) ENSNLEG00000030706 SIRPG (ENSNLEG00000009322) ENSNLEG00000027626 ENSNLEG00000009297 PDYN (ENSNLEG00000009288) STK35 (ENSNLEG00000009281) TGM3 (ENSNLEG00000009248) TGM6 (ENSNLEG00000009234) SNRPB (ENSNLEG00000029067) ENSNLEG00000034418 ZNF343 (ENSNLEG00000009203) TMC2 (ENSNLEG00000009192) NOP56 (ENSNLEG00000009178) IDH3B (ENSNLEG00000009124) EBF4 (ENSNLEG00000009110) ##22 CPXM1 (ENSNLEG00000009078) C20orf141 (ENSNLEG00000009075) ENSNLEG00000035344 ENSNLEG00000009073 ENSNLEG00000009065 PTPRA (ENSNLEG00000007558) GNRH2 (ENSNLEG00000007569) MRPS26 (ENSNLEG00000027041) OXT (ENSNLEG00000007574) AVP (ENSNLEG00000007575) ENSNLEG00000031559 FASTKD5 (ENSNLEG00000007580) LZTS3 (ENSNLEG00000007581) DDRGK1 (ENSNLEG00000027534) ITPA (ENSNLEG00000007585) Hominidae ANCESTRAL SPECIES 18 ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.d ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00910000147235 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Orangutan MODERN SPECIES 11 SIRPB2 (ENSPPYG00000010850) ENSPPYG00000010849 ENSPPYG00000010848 SIRPG (ENSPPYG00000010847) ENSPPYG00000035480 ENSPPYG00000029662 PDYN (ENSPPYG00000041266) STK35 (ENSPPYG00000010844) TGM3 (ENSPPYG00000010843) TGM6 (ENSPPYG00000010842) SNRPB (ENSPPYG00000010841) ZNF343 (ENSPPYG00000010840) TMC2 (ENSPPYG00000010839) NOP56 (ENSPPYG00000010838) IDH3B (ENSPPYG00000010837) EBF4 (ENSPPYG00000010836) ##22 CPXM1 (ENSPPYG00000010835) ENSPPYG00000010834 PCED1A (ENSPPYG00000010833) VPS16 (ENSPPYG00000010832) PTPRA (ENSPPYG00000010831) GNRH2 (ENSPPYG00000010830) MRPS26 (ENSPPYG00000010829) OXT (ENSPPYG00000010828) AVP (ENSPPYG00000010827) UBOX5 (ENSPPYG00000010825) FASTKD5 (ENSPPYG00000037409) LZTS3 (ENSPPYG00000010824) DDRGK1 (ENSPPYG00000010823) ITPA (ENSPPYG00000010822) SLC4A11 (ENSPPYG00000010821) Homo/Pan/Gorilla group ANCESTRAL SPECIES 16 ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.c.d ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.c.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00910000147235 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Gorilla MODERN SPECIES 11 SIRPD (ENSGGOG00000011798) ENSGGOG00000040262 ENSGGOG00000043770 SIRPG (ENSGGOG00000037655) ENSGGOG00000040241 SIRPA (ENSGGOG00000022094) PDYN (ENSGGOG00000004354) STK35 (ENSGGOG00000004854) TGM6 (ENSGGOG00000016126) SNRPB (ENSGGOG00000016138) ENSGGOG00000040402 ZNF343 (ENSGGOG00000005326) TMC2 (ENSGGOG00000007013) NOP56 (ENSGGOG00000002886) IDH3B (ENSGGOG00000010029) EBF4 (ENSGGOG00000015503) ##22 ENSGGOG00000038341 CPXM1 (ENSGGOG00000007734) C20orf141 (ENSGGOG00000044039) ENSGGOG00000041500 PCED1A (ENSGGOG00000016118) VPS16 (ENSGGOG00000016124) PTPRA (ENSGGOG00000005074) MRPS26 (ENSGGOG00000005088) ENSGGOG00000011857 AVP (ENSGGOG00000027655) UBOX5 (ENSGGOG00000008641) LZTS3 (ENSGGOG00000008647) DDRGK1 (ENSGGOG00000008733) ITPA (ENSGGOG00000008741) SLC4A11 (ENSGGOG00000011941) Homo/Pan group ANCESTRAL SPECIES 17 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.c.d ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.a.b.l.c.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00910000147235 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 Human MODERN SPECIES 12 SIRPD (ENSG00000125900) ENSG00000260861 SIRPB1 (ENSG00000101307) SIRPG (ENSG00000089012) SIRPA (ENSG00000198053) PDYN (ENSG00000101327) STK35 (ENSG00000125834) ENSG00000286022 TGM3 (ENSG00000125780) TGM6 (ENSG00000166948) SNRPB (ENSG00000125835) ZNF343 (ENSG00000088876) TMC2 (ENSG00000149488) NOP56 (ENSG00000101361) IDH3B (ENSG00000101365) EBF4 (ENSG00000088881) ##22 CPXM1 (ENSG00000088882) ENSG00000241690 C20orf141 (ENSG00000258713) TMEM239 (ENSG00000198326) PCED1A (ENSG00000132635) VPS16 (ENSG00000215305) PTPRA (ENSG00000132670) GNRH2 (ENSG00000125787) MRPS26 (ENSG00000125901) OXT (ENSG00000101405) AVP (ENSG00000101200) UBOX5 (ENSG00000185019) FASTKD5 (ENSG00000215251) LZTS3 (ENSG00000088899) DDRGK1 (ENSG00000198171) Pan ANCESTRAL SPECIES 15 ENSGT00960000186656.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.a.b.l.c.d ENSGT00960000186656.a.a.a.a.a.b.k ENSGT00960000186656.a.a.a.a.a.b.l.c.c ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000164774 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00910000147235 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.b ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Chimpanzee MODERN SPECIES 11 SIRPB2 (ENSPTRG00000013165) SIRPD (ENSPTRG00000013166) ENSPTRG00000044253 SIRPG (ENSPTRG00000047284) SIRPA (ENSPTRG00000013171) PDYN (ENSPTRG00000013172) STK35 (ENSPTRG00000013173) TGM3 (ENSPTRG00000013174) TGM6 (ENSPTRG00000013175) SNRPB (ENSPTRG00000013176) ENSPTRG00000044503 ZNF343 (ENSPTRG00000013177) TMC2 (ENSPTRG00000013178) NOP56 (ENSPTRG00000013179) IDH3B (ENSPTRG00000013180) EBF4 (ENSPTRG00000039291) ##22 ENSPTRG00000043018 CPXM1 (ENSPTRG00000013182) C20H20orf141 (ENSPTRG00000013183) TMEM239 (ENSPTRG00000045802) PCED1A (ENSPTRG00000013185) VPS16 (ENSPTRG00000013186) PTPRA (ENSPTRG00000033879) GNRH2P (ENSPTRG00000013187) MRPS26 (ENSPTRG00000013188) OXT (ENSPTRG00000013189) AVP (ENSPTRG00000013190) UBOX5 (ENSPTRG00000013191) LZTS3 (ENSPTRG00000013192) DDRGK1 (ENSPTRG00000022696) ITPA (ENSPTRG00000013194) Bonobo DUPLICATION Bonobo MODERN SPECIES 11 ENSPPAG00000029190 SIRPG (ENSPPAG00000029659) SIRPA (ENSPPAG00000030631) PDYN (ENSPPAG00000031221) STK35 (ENSPPAG00000031479) TGM3 (ENSPPAG00000031787) TGM6 (ENSPPAG00000033831) SNRPB (ENSPPAG00000036314) ENSPPAG00000042022 ZNF343 (ENSPPAG00000017593) TMC2 (ENSPPAG00000027274) NOP56 (ENSPPAG00000027513) IDH3B (ENSPPAG00000028742) ENSPPAG00000028388 ##22 ENSPPAG00000031408 ENSPPAG00000033649 ##22 CPXM1 (ENSPPAG00000036363) C20orf141 (ENSPPAG00000032615) ENSPPAG00000033975 PCED1A (ENSPPAG00000035453) VPS16 (ENSPPAG00000036219) PTPRA (ENSPPAG00000027097) ENSPPAG00000028687 ENSPPAG00000028910 UBOX5 (ENSPPAG00000029443) LZTS3 (ENSPPAG00000031124) DDRGK1 (ENSPPAG00000033842) ITPA (ENSPPAG00000035696) SLC4A11 (ENSPPAG00000037992) DNAAF9 (ENSPPAG00000029181) ENSPPAG00000039267 Bonobo MODERN SPECIES 11 SIRPD (ENSPPAG00000028803) SIRPB1 (ENSPPAG00000028995) ENSPPAG00000029190 SIRPG (ENSPPAG00000029659) SIRPA (ENSPPAG00000030631) PDYN (ENSPPAG00000031221) STK35 (ENSPPAG00000031479) TGM3 (ENSPPAG00000031787) TGM6 (ENSPPAG00000033831) SNRPB (ENSPPAG00000036314) ENSPPAG00000042022 ZNF343 (ENSPPAG00000017593) TMC2 (ENSPPAG00000027274) NOP56 (ENSPPAG00000027513) IDH3B (ENSPPAG00000028742) ENSPPAG00000028388 ##22 ENSPPAG00000031408 ENSPPAG00000033649 ##22 CPXM1 (ENSPPAG00000036363) C20orf141 (ENSPPAG00000032615) ENSPPAG00000033975 PCED1A (ENSPPAG00000035453) VPS16 (ENSPPAG00000036219) PTPRA (ENSPPAG00000027097) ENSPPAG00000028687 ENSPPAG00000028910 UBOX5 (ENSPPAG00000029443) LZTS3 (ENSPPAG00000031124) DDRGK1 (ENSPPAG00000033842) ITPA (ENSPPAG00000035696) SLC4A11 (ENSPPAG00000037992) Strepsirrhini ANCESTRAL SPECIES 12 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT01080000258042 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Lemuriformes ANCESTRAL SPECIES 10 ENSGT00940000161638 ENSGT00940000161179 ENSGT00940000153311.a.b.a.bb.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT01080000258042 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 Lemuriformes_a ANCESTRAL SPECIES 26 ENSGT00940000161638 ENSGT00940000161179 ENSGT00940000153311.a.b.a.bb.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052.e.a ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00910000144368 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT01080000258042 ENSGT00390000008453 ENSGT00390000004511.d.a.a ENSGT00390000004511.d.a.b Greater bamboo lemur MODERN SPECIES 96 ENSPSMG00000017205 ENSPSMG00000017231 PDYN (ENSPSMG00000017243) STK35 (ENSPSMG00000017254) TGM3 (ENSPSMG00000017266) TGM6 (ENSPSMG00000017309) ENSPSMG00000017334 ZNF343 (ENSPSMG00000017340) TMC2 (ENSPSMG00000017350) NOP56 (ENSPSMG00000017382) IDH3B (ENSPSMG00000017432) EBF4 (ENSPSMG00000017514) ##22 CPXM1 (ENSPSMG00000017523) C20orf141 (ENSPSMG00000017528) TMEM239 (ENSPSMG00000017537) PCED1A (ENSPSMG00000017549) VPS16 (ENSPSMG00000017621) PTPRA (ENSPSMG00000017772) ENSPSMG00000017828 MRPS26 (ENSPSMG00000017831) Coquerels sifaka MODERN SPECIES 126 ENSPCOG00000016961 NSFL1C (ENSPCOG00000017539) SIRPB2 (ENSPCOG00000021097) SIRPD (ENSPCOG00000005070) ENSPCOG00000021831 ENSPCOG00000015731 PDYN (ENSPCOG00000014429) STK35 (ENSPCOG00000025368) TGM3 (ENSPCOG00000014223) TGM6 (ENSPCOG00000015730) SNRPB (ENSPCOG00000013686) ZNF343 (ENSPCOG00000028005) TMC2 (ENSPCOG00000021212) NOP56 (ENSPCOG00000024681) IDH3B (ENSPCOG00000027224) EBF4 (ENSPCOG00000024579) ##22 CPXM1 (ENSPCOG00000018297) C20orf141 (ENSPCOG00000015244) TMEM239 (ENSPCOG00000027957) PCED1A (ENSPCOG00000028602) VPS16 (ENSPCOG00000027991) PTPRA (ENSPCOG00000026502) ENSPCOG00000019699 MRPS26 (ENSPCOG00000021945) ENSPCOG00000014878 AVP (ENSPCOG00000021593) Mouse lemur MODERN SPECIES 9 SIRPB2 (ENSMICG00000002528) ENSMICG00000033053 ENSMICG00000014412 ENSMICG00000041445 PDYN (ENSMICG00000031304) STK35 (ENSMICG00000036350) ENSMICG00000035984 TGM3 (ENSMICG00000003703) TGM6 (ENSMICG00000016494) ENSMICG00000016519 ENSMICG00000044209 ZNF343 (ENSMICG00000016529) TMC2 (ENSMICG00000016538) NOP56 (ENSMICG00000016553) ENSMICG00000016560 EBF4 (ENSMICG00000016566) ##22 CPXM1 (ENSMICG00000016572) C20orf141 (ENSMICG00000043953) TMEM239 (ENSMICG00000016576) PCED1A (ENSMICG00000016578) VPS16 (ENSMICG00000016588) PTPRA (ENSMICG00000029145) ENSMICG00000013781 MRPS26 (ENSMICG00000013793) ENSMICG00000035095 AVP (ENSMICG00000026411) UBOX5 (ENSMICG00000028718) LZTS3 (ENSMICG00000013812) DDRGK1 (ENSMICG00000013816) ITPA (ENSMICG00000013833) SLC4A11 (ENSMICG00000013842) Bushbaby MODERN SPECIES 140 BCL2L1 (ENSOGAG00000012419) ENSOGAG00000029303 ENSOGAG00000024851 ENSOGAG00000014581 ENSOGAG00000027552 ENSOGAG00000029222 ENSOGAG00000017054 PDYN (ENSOGAG00000033058) STK35 (ENSOGAG00000017059) TGM6 (ENSOGAG00000004674) SNRPB (ENSOGAG00000016149) ZNF343 (ENSOGAG00000033365) TMC2 (ENSOGAG00000004678) NOP56 (ENSOGAG00000004681) IDH3B (ENSOGAG00000004684) EBF4 (ENSOGAG00000004688) ##22 CPXM1 (ENSOGAG00000004692) TMEM239 (ENSOGAG00000004697) PCED1A (ENSOGAG00000004701) VPS16 (ENSOGAG00000004705) PTPRA (ENSOGAG00000031085) MRPS26 (ENSOGAG00000025385) ENSOGAG00000001617 AVP (ENSOGAG00000001892) UBOX5 (ENSOGAG00000032968) FASTKD5 (ENSOGAG00000031350) LZTS3 (ENSOGAG00000001893) DDRGK1 (ENSOGAG00000001895) ITPA (ENSOGAG00000001900) SLC4A11 (ENSOGAG00000034582) DNAAF9 (ENSOGAG00000001901) Atlantogenata ANCESTRAL SPECIES 6 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00960000186656.a.a.b ENSGT00960000186656.a.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 Xenarthra ANCESTRAL SPECIES 139 ENSGT01050000244942.b.a.b ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000008453 ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT01030000234607.A.a.b.b ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 ENSGT00390000003692 ENSGT00940000157346 Armadillo DUPLICATION Armadillo MODERN SPECIES 2615 ENSDNOG00000033366 IDH3B (ENSDNOG00000013719) NOP56 (ENSDNOG00000042962) EBF4 (ENSDNOG00000049548) ##22 CPXM1 (ENSDNOG00000031264) ENSDNOG00000035811 PCED1A (ENSDNOG00000036389) VPS16 (ENSDNOG00000015591) PTPRA (ENSDNOG00000025457) MRPS26 (ENSDNOG00000024910) ENSDNOG00000041696 Armadillo MODERN SPECIES 1477 ENSDNOG00000042184 ##22 Afrotheria ANCESTRAL SPECIES 3 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052 ENSGT00940000163290 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 ENSGT00940000168737 Tenrec MODERN SPECIES 8926 NOP56 (ENSETEG00000015951) ENSETEG00000015956 ##22 CPXM1 (ENSETEG00000015962) PCED1A (ENSETEG00000015965) VPS16 (ENSETEG00000015972) Afrotheria_a ANCESTRAL SPECIES 3 ENSGT00940000161638 ENSGT00520000055634.b ENSGT00940000161179 ENSGT00940000153311.a.b.a ENSGT00520000055567.a.a.a ENSGT00960000186656.a.b ENSGT00960000186656.a.a.a.b ENSGT00950000183149.B ENSGT00940000158197 ENSGT01050000244866.A.a.a.a.b ENSGT01050000244866.A.a.a.a.a ENSGT00940000155052 ENSGT01050000244942.b.a.b ENSGT00940000153534.B ENSGT00950000182989.D.a.b ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00940000165014 ENSGT00390000005090 ENSGT00390000002231.c ENSGT00390000003896 ENSGT00940000159585 ENSGT00390000005119 ENSGT00390000008453 ENSGT00390000004511.d.a.b ENSGT00510000049555 ENSGT00940000154078.b ENSGT00390000017193 ENSGT00390000015399 ENSGT00940000154894 ENSGT00940000168737 Elephant MODERN SPECIES 180 NSFL1C (ENSLAFG00000001678) SIRPB2 (ENSLAFG00000010283) ENSLAFG00000025598 ENSLAFG00000029135 ENSLAFG00000013244 ENSLAFG00000027376 ENSLAFG00000011047 PDYN (ENSLAFG00000012785) STK35 (ENSLAFG00000003808) TGM3 (ENSLAFG00000012764) TGM6 (ENSLAFG00000025825) SNRPB (ENSLAFG00000017588) TMC2 (ENSLAFG00000011689) NOP56 (ENSLAFG00000001406) IDH3B (ENSLAFG00000001405) EBF4 (ENSLAFG00000006892) ##22 CPXM1 (ENSLAFG00000006896) ENSLAFG00000030276 TMEM239 (ENSLAFG00000021744) PCED1A (ENSLAFG00000006903) VPS16 (ENSLAFG00000006906) PTPRA (ENSLAFG00000020650) GNRH2 (ENSLAFG00000028526) MRPS26 (ENSLAFG00000007936) AVP (ENSLAFG00000007073) UBOX5 (ENSLAFG00000020804) LZTS3 (ENSLAFG00000008808) DDRGK1 (ENSLAFG00000007847) ITPA (ENSLAFG00000002995) SLC4A11 (ENSLAFG00000030582) ENSLAFG00000025878 Hyrax MODERN SPECIES 7693 EBF4 (ENSPCAG00000011947) ##22 CPXM1 (ENSPCAG00000012075) Platypus MODERN SPECIES 15 PCGF1 (ENSOANG00000036465) ENSOANG00000045381 LBX2 (ENSOANG00000049763) ENSOANG00000037928 ENSOANG00000044725 ENSOANG00000041149 ENSOANG00000050731 INO80B (ENSOANG00000021297) RTKN (ENSOANG00000036121) WDR54 (ENSOANG00000032117) ENSOANG00000043880 ENSOANG00000010769 DCTN1 (ENSOANG00000043915) NOP56 (ENSOANG00000000505) IDH3B (ENSOANG00000040580) EBF4 (ENSOANG00000039383) ##22 ENSOANG00000015728 ENSOANG00000015729 ENSOANG00000046567 ENSOANG00000008753 ENSOANG00000047233 ENSOANG00000035907 ENSOANG00000008827 ENSOANG00000038007 ATRN (ENSOANG00000000438) DNAAF9 (ENSOANG00000048814) ENSOANG00000009320 DDRGK1 (ENSOANG00000048367) LZTS3 (ENSOANG00000020000) ENSOANG00000051112 UBOX5 (ENSOANG00000013034) Sauria ANCESTRAL SPECIES 6 ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00510000048167.b.a ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b ENSGT00390000002231.e ENSGT00390000003896 Archelosauria ANCESTRAL SPECIES 4 ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00980000198740 ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b ENSGT00390000002231.e ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00390000014979 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 Cryptodira ANCESTRAL SPECIES 2 ENSGT00940000156187 ENSGT00940000153322.A ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00940000161413 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b ENSGT00390000002231.e ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00390000014979 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000158491 ENSGT00390000001754 Testudinoidea ANCESTRAL SPECIES 37 ENSGT00940000156187 ENSGT00940000153322.A ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00940000161413 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b ENSGT00390000002231.e ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00390000014979 ENSGT00390000014530 ENSGT00940000164944.b ENSGT00940000158491 ENSGT00390000001754 Testudinidae ANCESTRAL SPECIES 56 ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b.d ENSGT00950000182932.A.b.a.a.b.c ENSGT00390000002231.e ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00390000014979 ENSGT00390000014530 ENSGT00940000164944.b ENSGT00940000158491 Abingdon island giant tortoise DUPLICATION Abingdon island giant tortoise MODERN SPECIES 2470 ENSCABG00000009640 ENSCABG00000009639 ##22 ENSCABG00000009637 ##22 Abingdon island giant tortoise MODERN SPECIES 2470 ENSCABG00000009640 ENSCABG00000009639 ##22 ENSCABG00000009637 ##22 Goode s thornscrub tortoise MODERN SPECIES 19 ENSGEVG00005014275 ENSGEVG00005014198 TEX261 (ENSGEVG00005014128) ENSGEVG00005013866 VAX2 (ENSGEVG00005013800) SIGLEC1 (ENSGEVG00005012651) HSPA12B (ENSGEVG00005012123) ADISSP (ENSGEVG00005012030) SPEF1 (ENSGEVG00005011959) CDC25B (ENSGEVG00005011877) ENSGEVG00005011828 AP5S1 (ENSGEVG00005011806) ENSGEVG00005011781 ENSGEVG00005011725 ENSGEVG00005011677 EBF4 (ENSGEVG00005011197) ##22 CPXM1 (ENSGEVG00005010062) ENSGEVG00005009899 ENSGEVG00005009718 ENSGEVG00005009684 ENSGEVG00005009629 VPS16 (ENSGEVG00005009585) IDH3B (ENSGEVG00005009547) NOP56 (ENSGEVG00005009468) DCTN1 (ENSGEVG00005009398) ENSGEVG00005009335 ENSGEVG00005009297 C2orf81 (ENSGEVG00005009250) WDR54 (ENSGEVG00005009226) ENSGEVG00005009189 ENSGEVG00005009154 Emydidae ANCESTRAL SPECIES 181 ENSGT00940000163615.B.a.d.b ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a painted turtle MODERN SPECIES 902 ENSCPBG00000024253 ENSCPBG00000024254 EBF4 (ENSCPBG00000024276) ##22 VPS16 (ENSCPBG00000024419) NOP56 (ENSCPBG00000024420) DCTN1 (ENSCPBG00000024423) ENSCPBG00000024427 ENSCPBG00000024429 ENSCPBG00000024430 ENSCPBG00000024433 WDR54 (ENSCPBG00000024434) ENSCPBG00000024437 RTKN (ENSCPBG00000024442) INO80B (ENSCPBG00000024445) WBP1 (ENSCPBG00000024447) MOGS (ENSCPBG00000024448) ENSCPBG00000024450 ENSCPBG00000024452 Three-toed box turtle MODERN SPECIES 185 ENSTMTG00000014103 ENSTMTG00000014095 EBF4 (ENSTMTG00000013928) ##22 CPXM1 (ENSTMTG00000013910) ENSTMTG00000013900 Archosauria ANCESTRAL SPECIES 1 ENSGT00940000153322.A ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00980000198740 ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 ENSGT00390000001754 ENSGT00950000183109.d Aves ANCESTRAL SPECIES 3 ENSGT00940000153322.A ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00980000198740 ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 ENSGT00390000001754 ENSGT00950000183109.d Neognathae ANCESTRAL SPECIES 5 ENSGT00940000153322.A.ab ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00980000198740 ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762.a ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 ENSGT00390000001754 ENSGT00950000183109.d Galloanserae ANCESTRAL SPECIES 5 ENSGT00940000156187 ENSGT00940000153322.A.`b.a ENSGT00510000047418 ENSGT00390000010888 ENSGT00980000198740 ENSGT00940000161413 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000171460 ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 ENSGT00390000001754 ENSGT00940000167728 Anatidae ANCESTRAL SPECIES 93 ENSGT00390000017284.a.b ENSGT00390000010888 ENSGT00980000198740 ENSGT00940000161413 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00940000171460 ENSGT00940000158524 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 Pink-footed goose MODERN SPECIES 380 PAIP2B (ENSABRG00000012155) ENSABRG00000012157 TEX261 (ENSABRG00000012160) ENSABRG00000012170 ATP6V1B1 (ENSABRG00000012191) VAX2 (ENSABRG00000012216) SIGLEC1 (ENSABRG00000012222) HSPA12B (ENSABRG00000012248) ADISSP (ENSABRG00000012280) ENSABRG00000012287 CDC25B (ENSABRG00000012309) ENSABRG00000012340 EBF4 (ENSABRG00000012429) ##22 ENSABRG00000013114 ENSABRG00000013117 VPS16 (ENSABRG00000013124) IDH3B (ENSABRG00000013135) NOP56 (ENSABRG00000013144) DCTN1 (ENSABRG00000013242) ENSABRG00000013296 ENSABRG00000013300 WDR54 (ENSABRG00000013308) ENSABRG00000013309 ENSABRG00000013325 Duck MODERN SPECIES 2274 EBF4 (ENSAPLG00000018245) ##22 Phasianidae ANCESTRAL SPECIES 35 ENSGT00390000010888 ENSGT00510000047418 ENSGT00940000153322.A.`b.a ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 ENSGT00940000167728 ENSGT00950000183109.d Phasianidae_b ANCESTRAL SPECIES 41 ENSGT00510000047418 ENSGT00940000153322.A.`b.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 ENSGT00940000167728 ENSGT00950000183109.d Chicken MODERN SPECIES 33 GNOT2 (ENSGALG00010018266) RAB11FIP5 (ENSGALG00010018302) SFXN5 (ENSGALG00010018344) EMX1 (ENSGALG00010018362) SPR (ENSGALG00010018385) EXOC6B (ENSGALG00010018410) CYP26B1 (ENSGALG00010018425) DYSF (ENSGALG00010018466) ENSGALG00010018495 ENSGALG00010018500 ENSGALG00010018545 ENSGALG00010018506 ENSGALG00010018521 ENSGALG00010018536 ENSGALG00010015915 EBF4 (ENSGALG00010016322) ##22 ENSGALG00010018538 CPXM1 (ENSGALG00010017399) ENSGALG00010017422 ENSGALG00010017414 NAT8B (ENSGALG00010017502) VPS16 (ENSGALG00010005978) IDH3B (ENSGALG00010005984) NOP56 (ENSGALG00010006001) DCTN1 (ENSGALG00010005337) ENSGALG00010006021 ENSGALG00010006038 ENSGALG00010006055 ENSGALG00010006060 WDR54 (ENSGALG00010006065) ENSGALG00010006072 Japanese quail MODERN SPECIES 34 ENSCJPG00005006719 ENSCJPG00005006723 NAGK (ENSCJPG00005006725) ENSCJPG00005006728 ENSCJPG00005006738 ADISSP (ENSCJPG00005006808) CDC25B (ENSCJPG00005006810) ENSCJPG00005006812 EBF4 (ENSCJPG00005006815) ##22 CPXM1 (ENSCJPG00005006816) ENSCJPG00005006817 ENSCJPG00005006818 VPS16 (ENSCJPG00005006819) IDH3B (ENSCJPG00005006821) NOP56 (ENSCJPG00005006827) DCTN1 (ENSCJPG00005006847) ENSCJPG00005006853 ENSCJPG00005006854 WDR54 (ENSCJPG00005006855) ENSCJPG00005006856 ENSCJPG00005006858 RTKN (ENSCJPG00005006867) ENSCJPG00005006871 WBP1 (ENSCJPG00005006874) Neognathae_b ANCESTRAL SPECIES 4 ENSGT00940000153322.A.ab ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00980000198740 ENSGT00510000048167.b.a ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762.a ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 ENSGT00940000166263 ENSGT00940000158491 ENSGT00940000167728 ENSGT00390000001754 Passeriformes ANCESTRAL SPECIES 4 ENSGT00950000182989.D.a.b ENSGT00390000003896 ENSGT00950000182932.A.b.a.b ENSGT00940000156141.C ENSGT00940000153322.A.`b.a ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762.a ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00440000033609 ENSGT00940000161476 ENSGT01030000234641.a.a ENSGT00940000158783.j ENSGT00940000158783.i.a ENSGT00940000154361.B ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a.g ENSGT00530000063713.b.a.h ENSGT00940000162199 Great tit MODERN SPECIES 23 SPR (ENSPMJG00000000078) EMX1 (ENSPMJG00000019542) SFXN5 (ENSPMJG00000019541) VAX2 (ENSPMJG00000019538) ENSPMJG00000019537 ENSPMJG00000019536 HSPA12B (ENSPMJG00000019534) ADISSP (ENSPMJG00000019533) SPEF1 (ENSPMJG00000019532) ENSPMJG00000019531 ENSPMJG00000019530 ##22 ENSPMJG00000019529 ##22 DYSF (ENSPMJG00000018671) CYP26B1 (ENSPMJG00000018667) ENSPMJG00000018664 EXOC6B (ENSPMJG00000018663) ENSPMJG00000018662 INO80B (ENSPMJG00000018661) WBP1 (ENSPMJG00000018660) MOGS (ENSPMJG00000018659) CCDC142 (ENSPMJG00000018658) ENSPMJG00000018657 LBX2 (ENSPMJG00000018656) PCGF1 (ENSPMJG00000018655) ENSPMJG00000018654 ENSPMJG00000018653 DQX1 (ENSPMJG00000018652) Passeriformes_d ANCESTRAL SPECIES 4 ENSGT00950000182989.D.a.b ENSGT00390000003896 ENSGT00950000182932.A.b.a.b ENSGT00940000156141.C ENSGT00940000153322.A.`b.b ENSGT00940000153322.A.`b.a ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00940000161413 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00440000033609 ENSGT00940000161476 ENSGT01030000234641.a.a ENSGT00940000158783.j ENSGT00940000158783.i.a ENSGT00940000154361.B ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a.g ENSGT00530000063713.b.a.h ENSGT00940000162199 Flycatcher MODERN SPECIES 268 ENSFALG00000023442 ##22 ENSFALG00000010935 ENSFALG00000010878 ENSFALG00000010867 Passeriformes_g ANCESTRAL SPECIES 5 ENSGT00390000003896 ENSGT00950000182932.A.b.a.b ENSGT00940000156141.C ENSGT00940000153322.A.`b.b ENSGT00940000153322.A.`b.a ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762.a ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00440000033609 ENSGT00940000161476 ENSGT01030000234641.a.a ENSGT00940000158783.i.b ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a.g ENSGT00530000063713.b.a.h ENSGT00940000162199 ENSGT00940000158971 ENSGT00940000160491 Passeroidea ANCESTRAL SPECIES 4 ENSGT00950000182989.D.a.b ENSGT00950000182932.A.b.a.b ENSGT00940000156141.C ENSGT00940000153322.A.`b.b ENSGT00940000153322.A.`b.a ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762.a ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156187 ENSGT00800000124060.A.a ENSGT00390000005739.a.a ENSGT00440000033609 ENSGT00940000161476 ENSGT01030000234641.a.a ENSGT00940000158783.i.b ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a.g ENSGT00530000063713.b.a.h ENSGT00940000162199 ENSGT00940000158971 ENSGT00940000160491 Zebra finch MODERN SPECIES 25 ENSTGUG00000027254 CPXM1 (ENSTGUG00000020261) ENSTGUG00000019911 ENSTGUG00000014566 ENSTGUG00000022611 ENSTGUG00000024296 NAGK (ENSTGUG00000020972) TEX261 (ENSTGUG00000026476) ATP6V1B1 (ENSTGUG00000017296) VAX2 (ENSTGUG00000014757) SIGLEC1 (ENSTGUG00000016383) ENSTGUG00000028681 HSPA12B (ENSTGUG00000029036) C4H20orf27 (ENSTGUG00000029136) SPEF1 (ENSTGUG00000021168) EBF4 (ENSTGUG00000023041) ##22 DYSF (ENSTGUG00000015557) CYP26B1 (ENSTGUG00000029374) ENSTGUG00000028265 ENSTGUG00000029577 ENSTGUG00000026873 ENSTGUG00000025867 ENSTGUG00000019090 ENSTGUG00000021645 ENSTGUG00000025586 ENSTGUG00000025354 ENSTGUG00000019785 ENSTGUG00000015491 ENSTGUG00000022247 ENSTGUG00000024799 ENSTGUG00000015459 Medium ground finch MODERN SPECIES 379 ENSGFOG00000012687 ##22 DYSF (ENSGFOG00000012073) Neognathae_c ANCESTRAL SPECIES 3 ENSGT00940000153322.A.ab ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00980000198740 ENSGT00510000048167.b.a ENSGT00940000161413 ENSGT00940000161043 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00990000210209 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C.n ENSGT00950000182932.A.b.a.b ENSGT00390000003896 ENSGT00950000182989.D.a.b ENSGT00940000153534.B ENSGT00940000155378.d ENSGT01030000235337 ENSGT00940000163763 ENSGT00940000167385 ENSGT00390000014530 ENSGT00940000164944 Kakapo MODERN SPECIES 24 PAIP2B (ENSSHBG00005012094) NAGK (ENSSHBG00005012077) TEX261 (ENSSHBG00005012047) ENSSHBG00005012016 ENSSHBG00005011990 VAX2 (ENSSHBG00005011973) SIGLEC1 (ENSSHBG00005011760) HSPA12B (ENSSHBG00005011630) ADISSP (ENSSHBG00005011603) SPEF1 (ENSSHBG00005011589) CDC25B (ENSSHBG00005011569) ENSSHBG00005011538 ENSSHBG00005011523 ENSSHBG00005011509 ENSSHBG00005011473 EBF4 (ENSSHBG00005011424) ##22 ENSSHBG00005011334 ENSSHBG00005011292 ENSSHBG00005011275 ENSSHBG00005011256 ENSSHBG00005011227 VPS16 (ENSSHBG00005010338) IDH3B (ENSSHBG00005010147) NOP56 (ENSSHBG00005004944) DCTN1 (ENSSHBG00005004907) ENSSHBG00005004891 ENSSHBG00005004886 ENSSHBG00005004884 WDR54 (ENSSHBG00005004879) ENSSHBG00005004876 Golden eagle MODERN SPECIES ENSACCG00020000002 ENSACCG00020000003 ENSACCG00020000004 EBF4 (ENSACCG00020000005) ##22 ENSACCG00020000006 ENSACCG00020000007 AP5S1 (ENSACCG00020000008) CDC25B (ENSACCG00020000009) SPEF1 (ENSACCG00020000010) ADISSP (ENSACCG00020000011) HSPA12B (ENSACCG00020000012) SIGLEC1 (ENSACCG00020000013) VAX2 (ENSACCG00020000014) ENSACCG00020000015 ATP6V1B1 (ENSACCG00020000016) ENSACCG00020000017 TEX261 (ENSACCG00020000018) NAGK (ENSACCG00020000019) PAIP2B (ENSACCG00020000020) Lepidosauria ANCESTRAL SPECIES 25 ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00510000048167.b.a ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b ENSGT00390000002231.e ENSGT00390000002231.f ENSGT00390000003896 ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a ENSGT00940000162199 ENSGT00940000179269 ENSGT00940000153123.B ENSGT00940000158971 ENSGT00940000160491 tuatara MODERN SPECIES 436 ENSSPUG00000006690 ENSSPUG00000006698 ##22 Episquamata ANCESTRAL SPECIES 3 ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00510000048167.b.a ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b ENSGT00390000002231.e ENSGT00390000002231.f ENSGT00390000003896 ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a ENSGT00940000162199 ENSGT00940000153123.B ENSGT00940000158971 ENSGT00940000160491 ENSGT00940000157346 Laterata ANCESTRAL SPECIES 9 ENSGT00390000017284.a.b ENSGT00510000047418 ENSGT00390000010888 ENSGT00390000005650 ENSGT00510000048167.b.a ENSGT00940000161413 ENSGT00940000161043 ENSGT00960000189762 ENSGT01100000263535.a.a ENSGT00940000159032 ENSGT00390000008711 ENSGT00910000144159.A.a ENSGT00940000158524 ENSGT00390000013178 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182932.A.b.a.a.b ENSGT00390000002231.e ENSGT00390000003896 ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832.db.b ENSGT00530000063713.b.a ENSGT00940000162199 ENSGT00940000153123.B ENSGT00940000158971 ENSGT00940000160491 ENSGT00940000157346 ENSGT00390000003692 Argentine black and white tegu MODERN SPECIES 71 ENSSMRG00000000415 ENSSMRG00000000392 ENSSMRG00000000364 EBF4 (ENSSMRG00000000310) ##22 CPXM1 (ENSSMRG00000000237) ENSSMRG00000000233 ENSSMRG00000000221 ENSSMRG00000000209 ENSSMRG00000000183 ENSSMRG00000000181 VPS16 (ENSSMRG00000000098) SMYD5 (ENSSMRG00000000050) PRADC1 (ENSSMRG00000000043) CCT7 (ENSSMRG00000018128) FBXO41 (ENSSMRG00000018125) EGR4 (ENSSMRG00000018124) ENSSMRG00000018119 ADAM33 (ENSSMRG00000018115) GFRA4 (ENSSMRG00000018110) Common wall lizard MODERN SPECIES 17 HSPA12B (ENSPMRG00000010720) ADISSP (ENSPMRG00000010712) SPEF1 (ENSPMRG00000010699) CDC25B (ENSPMRG00000010656) AP5S1 (ENSPMRG00000010640) ENSPMRG00000010632 ENSPMRG00000010630 ENSPMRG00000010626 ENSPMRG00000010620 ENSPMRG00000010616 ENSPMRG00000010612 ENSPMRG00000010606 ENSPMRG00000010599 ENSPMRG00000010595 ENSPMRG00000010575 EBF4 (ENSPMRG00000010529) ##22 CPXM1 (ENSPMRG00000010506) ENSPMRG00000010498 ENSPMRG00000010494 ENSPMRG00000010452 ENSPMRG00000010428 VPS16 (ENSPMRG00000010405) SMYD5 (ENSPMRG00000010384) PRADC1 (ENSPMRG00000010372) ENSPMRG00000010354 ENSPMRG00000010474 EGR4 (ENSPMRG00000010467) ENSPMRG00000010461 ADAM33 (ENSPMRG00000010438) ENSPMRG00000010422 GFRA4 (ENSPMRG00000010413) Toxicofera ANCESTRAL SPECIES 12 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00390000002231.f ENSGT00390000003896 ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a ENSGT00940000162199 ENSGT00940000160491 ENSGT00940000157346 ENSGT00390000003692 ENSGT00940000165596 ENSGT00940000154894 ENSGT01010000222287.B.a.a.b Lizard MODERN SPECIES 1303 ENSACAG00000038665 ##22 ENSACAG00000000222 ENSACAG00000044164 ENSACAG00000016550 ENSACAG00000000213 Elapidae ANCESTRAL SPECIES 61 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00390000002231.f ENSGT00390000003896 ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a ENSGT00940000162199 ENSGT00940000160491 ENSGT00940000157346 ENSGT00390000003692 ENSGT00940000165600 ENSGT00940000168737 Indian cobra MODERN SPECIES 3 ENSNNAG00000011624 ENSNNAG00000011738 EBF4 (ENSNNAG00000011811) ##22 ENSNNAG00000011950 ENSNNAG00000013351 VPS16 (ENSNNAG00000013429) SMYD5 (ENSNNAG00000013589) PRADC1 (ENSNNAG00000013603) CCT7 (ENSNNAG00000013625) FBXO41 (ENSNNAG00000013678) EGR4 (ENSNNAG00000013718) ATRN (ENSNNAG00000013763) DNAAF9 (ENSNNAG00000013829) ENSNNAG00000014064 HSPA12B (ENSNNAG00000014085) ENSNNAG00000014094 ENSNNAG00000014157 ENSNNAG00000014318 Elapidae_a DUPLICATION Elapidae_a DUPLICATION Elapidae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.db.a ##22 Acanthophiinae ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.db.a ##22 Mainland tiger snake MODERN SPECIES 1152 ENSNSUG00000007409 ##22 Blue-lipped sea krait MODERN SPECIES 9904 ENSLLTG00000013310 ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.db.b ##22 Acanthophiinae ANCESTRAL SPECIES ENSGT00950000182859.A.a.a.a.db.b ##22 Mainland tiger snake MODERN SPECIES 1186 ENSNSUG00000009148 ##22 Elapidae_a ANCESTRAL SPECIES 171 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a.eb ##22 ENSGT00390000003896 ENSGT00510000047420 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a ENSGT00940000162199 Acanthophiinae ANCESTRAL SPECIES 171 ENSGT00940000165044 ENSGT00950000182859.A.a.a.a.eb ##22 ENSGT00390000003896 ENSGT00390000009837 ENSGT00550000074832 ENSGT00530000063713.b.a ENSGT00940000162199 Mainland tiger snake MODERN SPECIES 2745 ENSNSUG00000004100 ##22 Eastern brown snake DUPLICATION Eastern brown snake MODERN SPECIES 203 ENSPTXG00000016235 ENSPTXG00000016247 ##22 VPS16 (ENSPTXG00000016256) PRADC1 (ENSPTXG00000016274) CCT7 (ENSPTXG00000016275) FBXO41 (ENSPTXG00000016276) EGR4 (ENSPTXG00000016278) Eastern brown snake MODERN SPECIES 1152 ENSPTXG00000015982 ##22 Elephant shark MODERN SPECIES 1654 NAGK (ENSCMIG00000012435) ENSCMIG00000012420 m1ap (ENSCMIG00000012415) ENSCMIG00000012412 ENSCMIG00000012406 ENSCMIG00000012398 ENSCMIG00000012392 pcgf1 (ENSCMIG00000012386) fgf24 (ENSCMIG00000012363) ENSCMIG00000012359 ENSCMIG00000012358 aup1 (ENSCMIG00000012355) ENSCMIG00000012352 ENSCMIG00000012348 ENSCMIG00000012341 ENSCMIG00000012332 #22 Cyclostomata ANCESTRAL SPECIES 1119 ENSGT00950000182859.A.a.a #22 ENSGT00940000155650 Lamprey MODERN SPECIES 33 ENSPMAG00000004238 #22 ENSPMAG00000004246 ENSPMAG00000004292 Vertebrata ANCESTRAL SPECIES ENSGT00950000182859.A.a.b ##22 Cyclostomata ANCESTRAL SPECIES ENSGT00950000182859.A.a.b ##22 Lamprey MODERN SPECIES 191 PWWP2B (ENSPMAG00000003044) ENSPMAG00000003045 psmd4a (ENSPMAG00000003046) HTR4 (ENSPMAG00000003070) ENSPMAG00000003080 IDUA (ENSPMAG00000003105) SLC26A2 (ENSPMAG00000003117) gck (ENSPMAG00000003141) ENSPMAG00000003177 mfsd13a (ENSPMAG00000003182) nop56 (ENSPMAG00000003197) ENSPMAG00000003279 ebf3a (ENSPMAG00000003287) ##22 EBF1 (ENSPMAG00000003301) ##22 Gnathostomata ANCESTRAL SPECIES 285 ENSGT00940000153713.B.d ENSGT01030000234527.A.a.b.b.a ##16 ENSGT00940000158185 ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00940000157281 ENSGT00950000182859.A.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 Elephant shark MODERN SPECIES 1504 slit3 (ENSCMIG00000019490) SIL1 (ENSCMIG00000019516) hspa9 (ENSCMIG00000019528) adra2da (ENSCMIG00000019559) ENSCMIG00000019560 ENSCMIG00000019561 JAKMIP2 (ENSCMIG00000019564) ENSCMIG00000019567 ENSCMIG00000019599 ##16 STK32A (ENSCMIG00000019640) ENSCMIG00000019649 ENSCMIG00000019657 ##21 ENSCMIG00000019660 tcerg1a (ENSCMIG00000019669) rnf145b (ENSCMIG00000019718) ebf3a (ENSCMIG00000019735) ##22 clint1a (ENSCMIG00000019744) ENSCMIG00000019746 thg1l (ENSCMIG00000019749) SOX30 (ENSCMIG00000019752) ADAM19 (ENSCMIG00000019754) ublcp1 (ENSCMIG00000019756) ENSCMIG00000019761 ENSCMIG00000019762 DOCK2 (ENSCMIG00000019797) INSYN2B (ENSCMIG00000019814) FOXI1 (ENSCMIG00000019816) ENSCMIG00000019820 SLC34A1 (ENSCMIG00000019822) ENSCMIG00000019823 ENSCMIG00000019826 Euteleostomi DUPLICATION Euteleostomi DUPLICATION Euteleostomi ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Amniota ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Sauria ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Lepidosauria ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Toxicofera ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Elapidae ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Blue-lipped sea krait MODERN SPECIES 2841 ENSLLTG00000002494 ##22 Laterata ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.a ##22 Common wall lizard MODERN SPECIES 10 ENSPMRG00000007837 HRH2 (ENSPMRG00000007833) ENSPMRG00000007828 ENSPMRG00000007824 ENSPMRG00000007820 ENSPMRG00000007815 ENSPMRG00000007811 ENSPMRG00000007804 ENSPMRG00000007803 ENSPMRG00000007800 ENSPMRG00000007796 ENSPMRG00000007793 UBLCP1 (ENSPMRG00000007786) RNF145 (ENSPMRG00000007773) ENSPMRG00000007766 ##22 EBF1 (ENSPMRG00000007754) ##22 ENSPMRG00000007750 ENSPMRG00000007745 CLINT1 (ENSPMRG00000007738) LSM11 (ENSPMRG00000007729) THG1L (ENSPMRG00000007708) SOX30 (ENSPMRG00000007702) ADAM19 (ENSPMRG00000007693) NIPAL4 (ENSPMRG00000007688) ENSPMRG00000007684 CYFIP2 (ENSPMRG00000007665) ITK (ENSPMRG00000007649) MED7 (ENSPMRG00000007642) ENSPMRG00000007641 ENSPMRG00000007636 ENSPMRG00000007631 Argentine black and white tegu MODERN SPECIES 42 CRYAB (ENSSMRG00000021296) CFAP68 (ENSSMRG00000021295) FDXACB1 (ENSSMRG00000021294) ALG9 (ENSSMRG00000021293) ENSSMRG00000021292 ENSSMRG00000021291 SIK2 (ENSSMRG00000021290) LAYN (ENSSMRG00000021289) HOATZ (ENSSMRG00000021288) ENSSMRG00000021287 LRRTM4 (ENSSMRG00000021286) ADRA1A (ENSSMRG00000021285) #15 DPYSL2 (ENSSMRG00000021283) #16 BNIP3L (ENSSMRG00000021282) #19 PPP2R2A (ENSSMRG00000021281) #21 ENSSMRG00000021280 ##22 ENSSMRG00000021279 EBF2 (ENSSMRG00000021083) #22 ENSSMRG00000021076 ENSSMRG00000021074 #24 GNRH1 (ENSSMRG00000021072) #25 DOCK5 (ENSSMRG00000021066) #26 NEFL (ENSSMRG00000021062) #27 ENSSMRG00000021061 ADAM28 (ENSSMRG00000021057) #31 STC1 (ENSSMRG00000021051) #32 NKX3-1 (ENSSMRG00000021050) #34 ENSSMRG00000021049 SLC25A37 (ENSSMRG00000021048) #36 ENTPD4 (ENSSMRG00000021046) LOXL2 (ENSSMRG00000021043) Euteleostomi ANCESTRAL SPECIES 247 ENSGT00390000012630.A ENSGT00940000159140.c.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT01030000234518.A.a.a ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 Actinopterygii ANCESTRAL SPECIES 103 ENSGT00390000011206.b ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538 ENSGT00940000156641 ENSGT00390000007501 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 Neopterygii ANCESTRAL SPECIES 24 ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538.g ENSGT00940000156641 ENSGT00390000007501 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412 ENSGT00940000158996 ENSGT00390000005989.a ##32 Osteoglossocephalai ANCESTRAL SPECIES 77 ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00940000159538.g.b ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.a.b ##32 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b ##32 ENSGT00940000156198.c.b ENSGT00940000154998.a.a Clupeocephala ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Euteleosteomorpha ANCESTRAL SPECIES 25 ENSGT00390000010712 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00940000164576.b.b ENSGT00940000156835.l.b ENSGT00940000164576.b.a.b ENSGT00550000074939 ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00940000159538.g.b ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00940000154998.a.a ENSGT00390000000483.a.a ENSGT00940000164716.B ENSGT00940000155857.f.b ENSGT00390000018781 ENSGT00940000160880 ENSGT00510000046929.b ENSGT00390000012163 ENSGT00940000160864 ENSGT00940000158849 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Chinook salmon MODERN SPECIES 33 timd4 (ENSOTSG00005007736) ENSOTSG00005007735 ENSOTSG00005007480 fam53c (ENSOTSG00005007473) foxi3a (ENSOTSG00005007472) nhp2 (ENSOTSG00005007470) grpel2 (ENSOTSG00005007469) ENSOTSG00005007466 afap1l1b (ENSOTSG00005007463) ablim3 (ENSOTSG00005006050) adrb2b (ENSOTSG00005006040) ubtd2 (ENSOTSG00005006038) IL12B (ENSOTSG00005006037) UBLCP1 (ENSOTSG00005006034) RNF145 (ENSOTSG00005005977) EBF1 (ENSOTSG00005005972) ##22 CLINT1 (ENSOTSG00005005969) ENSOTSG00005005967 TCERG1 (ENSOTSG00005005804) ENSOTSG00005005782 ##21 PCYOX1L (ENSOTSG00005005777) ENSOTSG00005005747 CREBRF (ENSOTSG00005005738) BNIP1 (ENSOTSG00005005730) STC2 (ENSOTSG00005047595) ##32 bod1 (ENSOTSG00005047594) CPEB4 (ENSOTSG00005047591) nsg2 (ENSOTSG00005047590) RAD54L2 (ENSOTSG00005047589) tmem115 (ENSOTSG00005047588) ENSOTSG00005047587 Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Amniota ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Sauria ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Lepidosauria ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Laterata ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b ##22 Argentine black and white tegu MODERN SPECIES 97 ENSSMRG00000017642 ENSSMRG00000017643 ENSSMRG00000017644 ENSSMRG00000017650 ENSSMRG00000017651 ENSSMRG00000017654 ENSSMRG00000017655 ENSSMRG00000017656 ENSSMRG00000017657 UBLCP1 (ENSSMRG00000017658) RNF145 (ENSSMRG00000017660) ENSSMRG00000017661 ##22 ENSSMRG00000017663 ##22 CLINT1 (ENSSMRG00000017676) LSM11 (ENSSMRG00000017677) THG1L (ENSSMRG00000017679) SOX30 (ENSSMRG00000017680) ADAM19 (ENSSMRG00000017682) NIPAL4 (ENSSMRG00000017684) CYFIP2 (ENSSMRG00000017686) ITK (ENSSMRG00000017690) MED7 (ENSSMRG00000017725) ENSSMRG00000017726 ENSSMRG00000017732 ENSSMRG00000017733 Toxicofera ANCESTRAL SPECIES 3 ENSGT00940000158553.b.a ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01090000260260.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES 2 ENSGT00940000158553.b.a ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01020000230731.A ENSGT01020000230731.B.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.a.b.a ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b ENSGT00940000159577 Elapidae_a ANCESTRAL SPECIES 11 ENSGT00940000158553.b.a ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01020000230731.A ENSGT01020000230731.B.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.a.b.a ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b ENSGT00940000159577 Acanthophiinae ANCESTRAL SPECIES 12 ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01000000217042 ENSGT01020000230731.A ENSGT01020000230731.B.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.a.b.a ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b ENSGT00940000159577 Mainland tiger snake DUPLICATION Mainland tiger snake MODERN SPECIES 169 ENSNSUG00000019039 ENSNSUG00000019040 ENSNSUG00000019041 ##22 ENSNSUG00000019042 ##22 ENSNSUG00000019043 CLINT1 (ENSNSUG00000019044) LSM11 (ENSNSUG00000019045) THG1L (ENSNSUG00000019046) SOX30 (ENSNSUG00000019047) ADAM19 (ENSNSUG00000019048) NIPAL4 (ENSNSUG00000019049) ENSNSUG00000019050 CYFIP2 (ENSNSUG00000019051) ENSNSUG00000019053 ENSNSUG00000019054 MED7 (ENSNSUG00000019055) ENSNSUG00000019056 SGCD (ENSNSUG00000019058) Mainland tiger snake MODERN SPECIES 169 ENSNSUG00000019039 ENSNSUG00000019040 ENSNSUG00000019041 ##22 ENSNSUG00000019042 ##22 ENSNSUG00000019043 CLINT1 (ENSNSUG00000019044) LSM11 (ENSNSUG00000019045) THG1L (ENSNSUG00000019046) SOX30 (ENSNSUG00000019047) ADAM19 (ENSNSUG00000019048) NIPAL4 (ENSNSUG00000019049) ENSNSUG00000019050 CYFIP2 (ENSNSUG00000019051) ENSNSUG00000019053 ENSNSUG00000019054 MED7 (ENSNSUG00000019055) ENSNSUG00000019056 SGCD (ENSNSUG00000019058) Eastern brown snake MODERN SPECIES 6 ENSPTXG00000000439 NOP16 (ENSPTXG00000000421) ARL10 (ENSPTXG00000000409) KIAA1191 (ENSPTXG00000000385) ENSPTXG00000000373 THOC3 (ENSPTXG00000000353) ENSPTXG00000000345 HRH2 (ENSPTXG00000000338) ENSPTXG00000000323 ENSPTXG00000000310 ENSPTXG00000000297 ENSPTXG00000000289 UBLCP1 (ENSPTXG00000000273) RNF145 (ENSPTXG00000000254) ENSPTXG00000000247 EBF1 (ENSPTXG00000000092) ##22 CLINT1 (ENSPTXG00000000060) LSM11 (ENSPTXG00000000047) THG1L (ENSPTXG00000016242) SOX30 (ENSPTXG00000016217) ADAM19 (ENSPTXG00000016200) ENSPTXG00000016190 ENSPTXG00000016187 CYFIP2 (ENSPTXG00000014047) ENSPTXG00000014028 ENSPTXG00000014026 MED7 (ENSPTXG00000014024) ENSPTXG00000014023 SGCD (ENSPTXG00000014000) MRPL22 (ENSPTXG00000013999) GEMIN5 (ENSPTXG00000013953) Blue-lipped sea krait MODERN SPECIES 3413 ENSLLTG00000004918 ##22 Indian cobra MODERN SPECIES 1 ENSNNAG00000017200 ARL10 (ENSNNAG00000017202) KIAA1191 (ENSNNAG00000006813) ENSNNAG00000006838 THOC3 (ENSNNAG00000006904) ENSNNAG00000006915 HRH2 (ENSNNAG00000006925) ENSNNAG00000006954 ENSNNAG00000006971 ENSNNAG00000006991 ENSNNAG00000007010 ENSNNAG00000007052 ENSNNAG00000007069 UBLCP1 (ENSNNAG00000007083) RNF145 (ENSNNAG00000007136) EBF1 (ENSNNAG00000007189) ##22 CLINT1 (ENSNNAG00000007510) LSM11 (ENSNNAG00000007714) THG1L (ENSNNAG00000007747) SOX30 (ENSNNAG00000007783) ADAM19 (ENSNNAG00000007865) ENSNNAG00000008071 CYFIP2 (ENSNNAG00000008140) ENSNNAG00000008802 MED7 (ENSNNAG00000008830) ENSNNAG00000008848 SGCD (ENSNNAG00000008891) ENSNNAG00000009098 ENSNNAG00000009113 MRPL22 (ENSNNAG00000009139) GEMIN5 (ENSNNAG00000009290) Elapidae ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b.b ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.a.b.b ##22 Blue-lipped sea krait MODERN SPECIES 7039 ENSLLTG00000004596 ##22 Euteleostomi ANCESTRAL SPECIES 247 ENSGT00390000012630.A ENSGT00940000159140.c.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT01030000234518.A.a.a ENSGT00940000165044 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 Actinopterygii ANCESTRAL SPECIES 103 ENSGT00390000007125.b ENSGT00940000156866 ENSGT00390000014165 ENSGT00940000160854 ENSGT00390000011206.b ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538 ENSGT00940000156641 ENSGT00390000007501 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.a.a ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 Neopterygii ANCESTRAL SPECIES 24 ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538.g ENSGT00940000156641 ENSGT00390000007501 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.C ENSGT00950000182932.A.b.a.b ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 Spotted gar MODERN SPECIES 672 PWWP2A (ENSLOCG00000009452) fabp6 (ENSLOCG00000009437) ccnjl (ENSLOCG00000009433) C1QTNF2 (ENSLOCG00000009423) slu7 (ENSLOCG00000009410) grpel2 (ENSLOCG00000009404) afap1l1a (ENSLOCG00000009385) ablim3 (ENSLOCG00000009374) SH3TC2 (ENSLOCG00000009362) adrb2a (ENSLOCG00000009352) ubtd2 (ENSLOCG00000009340) EFCAB9 (ENSLOCG00000009328) il12ba (ENSLOCG00000009317) ublcp1 (ENSLOCG00000009305) rnf145b (ENSLOCG00000009293) ebf3a (ENSLOCG00000009282) ##22 clint1a (ENSLOCG00000009271) LSM11 (ENSLOCG00000009264) thg1l (ENSLOCG00000009255) ADAM19 (ENSLOCG00000009244) ENSLOCG00000009227 GPR151 (ENSLOCG00000018302) ppp2r2bb (ENSLOCG00000009212) ##21 PCYOX1L (ENSLOCG00000009203) IL17B (ENSLOCG00000009196) rpl26 (ENSLOCG00000009189) atp6v0e1 (ENSLOCG00000009182) CREBRF (ENSLOCG00000009174) BNIP1 (ENSLOCG00000009167) nkx2.5 (ENSLOCG00000009163) stc2a (ENSLOCG00000009157) ##32 Osteoglossocephalai ANCESTRAL SPECIES 77 ENSGT00730000112008 ENSGT00950000183067.a.b.a.d ENSGT00940000156835 ENSGT00940000164576.b.a.b ENSGT00550000074939 ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00940000159538.g.b ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.a.b ##32 Osteoglossiformes DUPLICATION Osteoglossiformes ANCESTRAL SPECIES 23 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000164576.b.a.a ENSGT00550000074939 ENSGT00390000005589.a.b.n ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.b.k ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00940000156641 ENSGT00390000012630.A.b ENSGT00940000157281.x ENSGT00950000182859.A.a.b.b.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT01030000238653 ENSGT00390000007125.b.h ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.a.a ##32 Asian bonytongue MODERN SPECIES 4 ENSSFOG00015027769 WNT8A (ENSSFOG00015016952) ENSSFOG00015016865 ENSSFOG00015027779 foxi3b (ENSSFOG00015017028) nhp2 (ENSSFOG00015032223) ENSSFOG00015017077 pttg1 (ENSSFOG00015017097) grpel2 (ENSSFOG00015017109) afap1l1a (ENSSFOG00015017127) ablim3 (ENSSFOG00015017193) SH3TC2 (ENSSFOG00015017275) adrb2a (ENSSFOG00015017309) ENSSFOG00015017328 RNF145 (ENSSFOG00015017406) EBF1 (ENSSFOG00015017450) ##22 clint1a (ENSSFOG00015017553) LSM11 (ENSSFOG00015025495) thg1l (ENSSFOG00015017619) ADAM19 (ENSSFOG00015017640) tcerg1a (ENSSFOG00015017666) GPR151 (ENSSFOG00015017703) PPP2R2B (ENSSFOG00015031806) ##21 IL17B (ENSSFOG00015017749) rpl26 (ENSSFOG00015026723) ENSSFOG00015017779 CREBRF (ENSSFOG00015017854) BNIP1 (ENSSFOG00015026362) nkx2.5 (ENSSFOG00015017890) STC2 (ENSSFOG00015017907) ##32 CPEB4 (ENSSFOG00015017925) P. kingsleyae MODERN SPECIES 407 ubtd2 (ENSPKIG00000002109) il12ba (ENSPKIG00000002145) RNF145 (ENSPKIG00000002192) EBF1 (ENSPKIG00000002259) ##22 clint1a (ENSPKIG00000002366) LSM11 (ENSPKIG00000002386) thg1l (ENSPKIG00000002407) ENSPKIG00000002429 ENSPKIG00000002484 tcerg1a (ENSPKIG00000002573) GPR151 (ENSPKIG00000002624) PPP2R2B (ENSPKIG00000002647) ##21 IL17B (ENSPKIG00000002711) rpl26 (ENSPKIG00000002725) atp6v0e1 (ENSPKIG00000002748) CREBRF (ENSPKIG00000002819) BNIP1 (ENSPKIG00000002855) nkx2.5 (ENSPKIG00000002891) Osteoglossiformes ANCESTRAL SPECIES 23 ENSGT00940000165836 ENSGT00940000157061.b ENSGT00530000063371.C.a.a ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835 ENSGT00940000161176 ENSGT00940000164576.b.a.b ENSGT00390000005589.a.b.m ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b.l ENSGT00940000159538.g.b ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281.w ENSGT00950000182859.A.a.b.b.b ##22 ENSGT00940000155650.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00390000007125.b.g ENSGT00390000014412.k ENSGT00390000005989.a.a.b ##32 ENSGT00390000005989.a.b ##32 ENSGT00940000156198.c.b ENSGT00940000154998.a.a.s ENSGT00390000000483.a.a.e ENSGT00940000155857.f.b ENSGT00390000018781 ENSGT00940000156386.c ENSGT00940000160880.d ENSGT00510000046929.b.g Asian bonytongue MODERN SPECIES 19 ENSSFOG00015022932 ENSSFOG00015022938 fam53c (ENSSFOG00015033270) ENSSFOG00015022968 zmat2 (ENSSFOG00015022982) lcp2a (ENSSFOG00015022992) foxi3a (ENSSFOG00015028060) grpel2 (ENSSFOG00015030367) afap1l1b (ENSSFOG00015023026) ablim3 (ENSSFOG00015023081) adrb2b (ENSSFOG00015030060) ubtd2 (ENSSFOG00015030397) ENSSFOG00015024617 ublcp1 (ENSSFOG00015023175) RNF145 (ENSSFOG00015023193) EBF1 (ENSSFOG00015023208) ##22 ENSSFOG00015023239 CLINT1 (ENSSFOG00015023249) TCERG1 (ENSSFOG00015023283) ENSSFOG00015000086 ##21 PCYOX1L (ENSSFOG00015024935) atp6v0e1 (ENSSFOG00015026286) CREBRF (ENSSFOG00015000199) stc2a (ENSSFOG00015000247) ##32 bod1 (ENSSFOG00015000254) CPEB4 (ENSSFOG00015000264) nsg2 (ENSSFOG00015000318) drd1b (ENSSFOG00015000350) RAD50 (ENSSFOG00015000414) kif3a (ENSSFOG00015000552) POU4F3 (ENSSFOG00015000571) P. kingsleyae MODERN SPECIES 102 ENSPKIG00000017864 ENSPKIG00000017830 fam53c (ENSPKIG00000017801) zmat2 (ENSPKIG00000017778) lcp2a (ENSPKIG00000017751) ENSPKIG00000017711 grpel2 (ENSPKIG00000017691) afap1l1b (ENSPKIG00000017659) ablim3 (ENSPKIG00000017594) adrb2b (ENSPKIG00000017550) ENSPKIG00000017541 ubtd2 (ENSPKIG00000017530) ENSPKIG00000017501 ublcp1 (ENSPKIG00000017480) RNF145 (ENSPKIG00000017449) EBF1 (ENSPKIG00000017357) ##22 Clupeocephala DUPLICATION Clupeocephala DUPLICATION Clupeocephala ANCESTRAL SPECIES 11 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00940000156835.l.b ENSGT00940000164576.b.a.b ENSGT00550000074939 ENSGT00940000159538.g.b ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT00950000182859.A.a.b.b.c.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00940000154998.a.a ENSGT00390000000483.a.a Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.a ##22 Protacanthopterygii ANCESTRAL SPECIES 44 ENSGT00530000063371.C.a ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835.l.b ENSGT00940000164576.b.a.b ENSGT00550000074939 ENSGT00390000005589.a.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00940000159538.g.b ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.c.a ##22 ENSGT00940000155650.a.b.c ENSGT00940000161042 ENSGT00940000157770 ENSGT00950000182864.a.b.b.a.b.a.b.a ##21 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00940000154998.a.a.w ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a ENSGT00940000164716.B ENSGT00940000155857.f.b ENSGT00390000018781 Salmoninae ANCESTRAL SPECIES 210 ENSGT00950000182859.A.a.b.b.c.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042 ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b ENSGT00940000155857.f.b.d ENSGT00390000018781 ENSGT00970000197177 Salmoninae_a DUPLICATION Salmoninae_a ANCESTRAL SPECIES 4 ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042 ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00990000214210 ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b ENSGT00940000155857.f.b.d ENSGT00390000018781 Oncorhynchus ANCESTRAL SPECIES 4 ENSGT00940000163509.b.h ENSGT00940000165075.a.b.a.b ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042.d ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00990000214210 ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b ENSGT00940000155857.f.b.d ENSGT00390000018781 Rainbow trout MODERN SPECIES 3 ENSOMYG00000017430 foxi3a (ENSOMYG00000017410) ENSOMYG00000017396 nhp2 (ENSOMYG00000075157) ENSOMYG00000071550 grpel2 (ENSOMYG00000017377) afap1l1b (ENSOMYG00000017287) ABLIM3 (ENSOMYG00000017213) adrb2b (ENSOMYG00000017194) ubtd2 (ENSOMYG00000017184) ENSOMYG00000049547 il-12B2 (ENSOMYG00000017163) UBLCP1 (ENSOMYG00000017128) RNF145 (ENSOMYG00000017078) ENSOMYG00000053188 EBF1 (ENSOMYG00000016373) ##22 CLINT1 (ENSOMYG00000016310) ENSOMYG00000016303 ENSOMYG00000016176 ENSOMYG00000016167 ##21 ENSOMYG00000016147 ENSOMYG00000016135 CREBRF (ENSOMYG00000016119) sec20 (ENSOMYG00000016108) STC2 (ENSOMYG00000016097) ##32 bod1 (ENSOMYG00000016088) CPEB4 (ENSOMYG00000015957) ENSOMYG00000009557 nsg2 (ENSOMYG00000015936) msx2b (ENSOMYG00000056772) drd1b (ENSOMYG00000015927) Oncorhynchus_a ANCESTRAL SPECIES 2 ENSGT00940000163509.a.a.a.q.b ENSGT00940000163509.b.h ENSGT00940000165075.a.b.a.b ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042.d ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b ENSGT00940000155857.f.b.d ENSGT00390000018781 ENSGT00970000197177 Coho salmon MODERN SPECIES 26 ENSOKIG00005002899 ENSOKIG00005002891 timd4 (ENSOKIG00005002884) ENSOKIG00005002877 ENSOKIG00005002826 ENSOKIG00005002814 foxi3a (ENSOKIG00005002795) ENSOKIG00005002782 afap1l1b (ENSOKIG00005002733) ABLIM3 (ENSOKIG00005002317) adrb2b (ENSOKIG00005002209) ubtd2 (ENSOKIG00005002179) IL12B (ENSOKIG00005002154) UBLCP1 (ENSOKIG00005002126) RNF145 (ENSOKIG00005002040) EBF1 (ENSOKIG00005001939) ##22 CLINT1 (ENSOKIG00005001894) ENSOKIG00005001865 TCERG1 (ENSOKIG00005001795) ENSOKIG00005001711 ##21 PCYOX1L (ENSOKIG00005001695) CREBRF (ENSOKIG00005001682) BNIP1 (ENSOKIG00005050293) STC2 (ENSOKIG00005050291) ##32 bod1 (ENSOKIG00005050285) CPEB4 (ENSOKIG00005050275) nsg2 (ENSOKIG00005050268) ENSOKIG00005050265 msx2b (ENSOKIG00005050264) drd1b (ENSOKIG00005050262) RAD50 (ENSOKIG00005050222) Salmo ANCESTRAL SPECIES 44 ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042 ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00990000214210 ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b ENSGT00940000155857.f.b.d ENSGT00390000018781 Atlantic salmon MODERN SPECIES 4 timd4 (ENSSSAG00000116308) ENSSSAG00000069406 ctbp2 (ENSSSAG00000069412) fam53c (ENSSSAG00000095597) ENSSSAG00000069491 lcp2 (ENSSSAG00000069494) foxi3a (ENSSSAG00000090123) nola2 (ENSSSAG00000069506) afap1l1b (ENSSSAG00000069515) ABLIM3 (ENSSSAG00000069535) adrb2b (ENSSSAG00000100403) ubtd2 (ENSSSAG00000069624) IL12p40b2 (ENSSSAG00000069633) UBLCP1 (ENSSSAG00000069642) RNF145 (ENSSSAG00000069680) ebf1 (ENSSSAG00000070298) ##22 CLINT1 (ENSSSAG00000072862) ENSSSAG00000072867 ENSSSAG00000072917 ENSSSAG00000073861 ##21 ENSSSAG00000103687 ENSSSAG00000086568 ENSSSAG00000073883 CREBRF (ENSSSAG00000073887) BNIP1 (ENSSSAG00000108295) STC2 (ENSSSAG00000073897) ##32 fa44b (ENSSSAG00000073900) CPEB4 (ENSSSAG00000073910) nsg2 (ENSSSAG00000108039) msx2b (ENSSSAG00000074113) ENSSSAG00000121958 Salmoninae_a ANCESTRAL SPECIES 44 ENSGT00940000157061.b.k.b.a ENSGT00530000063371.C.a.c ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.c.a.b ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c ENSGT00940000160880.g ENSGT00510000046929.b.c ENSGT00390000012163.d Oncorhynchus ANCESTRAL SPECIES 41 ENSGT00940000157061.b.k.b.a ENSGT00530000063371.C.a.c ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.c.a.b ##22 ENSGT00950000182859.A.a.b.b.c.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000161042.c ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c Rainbow trout MODERN SPECIES 1 ENSOMYG00000018199 zmat2 (ENSOMYG00000018246) slbp2 (ENSOMYG00000018216) ENSOMYG00000018338 foxi3a (ENSOMYG00000018364) nhp2 (ENSOMYG00000018371) grpel2 (ENSOMYG00000018397) afap1l1b (ENSOMYG00000018410) ABLIM3 (ENSOMYG00000065012) adrb2b (ENSOMYG00000012647) ubtd2 (ENSOMYG00000064167) ENSOMYG00000068494 IL12B (ENSOMYG00000017650) UBLCP1 (ENSOMYG00000017671) RNF145 (ENSOMYG00000017690) EBF1 (ENSOMYG00000075841) ##22 ENSOMYG00000075590 ENSOMYG00000068243 CLINT1 (ENSOMYG00000069962) ENSOMYG00000030826 ENSOMYG00000031043 ##21 ATP6V0E1 (ENSOMYG00000052848) CREBRF (ENSOMYG00000031280) BNIP1 (ENSOMYG00000031293) STC2 (ENSOMYG00000031300) ##32 ENSOMYG00000071622 bod1 (ENSOMYG00000031304) CPEB4 (ENSOMYG00000031322) nsg2 (ENSOMYG00000031369) msx2b (ENSOMYG00000066549) ENSOMYG00000052445 Salmo ANCESTRAL SPECIES 17 ENSGT00940000157061.b.k.b.a ENSGT00530000063371.C.a.c ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.c.a.b ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c ENSGT00940000160880.g ENSGT00510000046929.b.c ENSGT00390000012163.d Atlantic salmon MODERN SPECIES 23 ENSSSAG00000089832 fam53c (ENSSSAG00000079951) slbp2 (ENSSSAG00000079947) zmat2 (ENSSSAG00000079943) LCP2 (ENSSSAG00000079937) foxi3a (ENSSSAG00000092072) nhp2 (ENSSSAG00000098655) grpel2 (ENSSSAG00000079928) afap1l1b (ENSSSAG00000079915) ABLIM3 (ENSSSAG00000079852) adrb2b (ENSSSAG00000110588) ubtd2 (ENSSSAG00000096167) IL12B (ENSSSAG00000079839) UBLCP1 (ENSSSAG00000079817) RNF145 (ENSSSAG00000079811) EBF1 (ENSSSAG00000079780) ##22 CLINT1 (ENSSSAG00000079767) ENSSSAG00000079669 ENSSSAG00000106518 ##21 ATP6V0E1 (ENSSSAG00000115307) CREBRF (ENSSSAG00000079350) BNIP1 (ENSSSAG00000079340) STC2 (ENSSSAG00000079338) ##32 FA44B (ENSSSAG00000079334) CPEB4 (ENSSSAG00000079086) nsg2 (ENSSSAG00000117002) msx2b (ENSSSAG00000117200) DRD1 (ENSSSAG00000079063) pou4f3 (ENSSSAG00000079060) RBM27 (ENSSSAG00000079044) ENSSSAG00000079034 Huchen MODERN SPECIES 2037 ENSHHUG00000028534 EBF1 (ENSHHUG00000028536) ##22 CLINT1 (ENSHHUG00000028538) ENSHHUG00000028542 TCERG1 (ENSHHUG00000028549) ENSHHUG00000028557 ##21 Clupeocephala ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Huchen MODERN SPECIES 2255 ENSHHUG00000045693 ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Oncorhynchus ANCESTRAL SPECIES 41 ENSGT00530000063371.C.a.c ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.c.a.b ##22 ENSGT00950000182859.A.a.b.b.c.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000161042.c ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c ENSGT00940000160880.g Oncorhynchus_a ANCESTRAL SPECIES 43 ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.a.b.g.b.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a ##22 ENSGT00950000182859.A.a.b.b.c.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000161042.c ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c ENSGT00940000160880.g Coho salmon MODERN SPECIES 20 ENSOKIG00005037572 foxi3a (ENSOKIG00005037555) nhp2 (ENSOKIG00005037534) grpel2 (ENSOKIG00005037510) afap1l1b (ENSOKIG00005037475) ENSOKIG00005037461 ABLIM3 (ENSOKIG00005037308) adrb2b (ENSOKIG00005037279) ubtd2 (ENSOKIG00005037269) ENSOKIG00005037259 ENSOKIG00005037227 UBLCP1 (ENSOKIG00005037194) RNF145 (ENSOKIG00005037114) ENSOKIG00005037103 EBF1 (ENSOKIG00005037089) ##22 EBF1 (ENSOKIG00005037083) ##22 ENSOKIG00005037071 ##22 CLINT1 (ENSOKIG00005037005) TCERG1 (ENSOKIG00005036688) DLX6 (ENSOKIG00005036642) ENSOKIG00005036438 ##21 ATP6V0E1 (ENSOKIG00005036389) CREBRF (ENSOKIG00005036368) BNIP1 (ENSOKIG00005036339) STC2 (ENSOKIG00005036318) ##32 bod1 (ENSOKIG00005036294) CPEB4 (ENSOKIG00005035997) nsg2 (ENSOKIG00005035972) msx2b (ENSOKIG00005035967) drd1b (ENSOKIG00005035960) POU4F3 (ENSOKIG00005035942) Otomorpha ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Otophysi ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Characoidei ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.c.b ##22 Mexicana tetra MODERN SPECIES 566 ENSAMXG00000036075 p4ha2 (ENSAMXG00000032010) ENSAMXG00000029810 ENSAMXG00000037655 EBF1 (ENSAMXG00000039566) ##22 Clupeocephala ANCESTRAL SPECIES 11 ENSGT00950000182934.b ENSGT00940000156944.a.b ENSGT00940000161609 ENSGT00940000164705 ENSGT00390000010712 ENSGT00940000156835.k ENSGT00940000161176 ENSGT00940000156835.l.b ENSGT00940000164576.b.a.b ENSGT00550000074939 ENSGT00940000159538.g.b ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT00950000182859.A.a.b.b.c.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000007125.b Otomorpha DUPLICATION Otomorpha ANCESTRAL SPECIES 16 ENSGT00390000011206.b ENSGT00950000182859.A.a.b.b.d.a ##22 ENSGT00940000155650.a.b ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00940000154998.a.a ENSGT00390000000483.a.a ENSGT00940000164716.B ENSGT00940000155857.f.b Clupeiformes ANCESTRAL SPECIES 611 ENSGT00940000166658.a.b ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 Denticle herring MODERN SPECIES 16 mntb (ENSDCDG00000003294) septin4a (ENSDCDG00000002862) EOLA1 (ENSDCDG00000002849) mtmr1b (ENSDCDG00000002678) hmgb3b (ENSDCDG00000002660) ENSDCDG00000002655 TRPC5 (ENSDCDG00000002650) alg13 (ENSDCDG00000002634) ENSDCDG00000002630 dacha (ENSDCDG00000002625) chm (ENSDCDG00000002621) ENSDCDG00000002617 stk26 (ENSDCDG00000002601) map4k6 (ENSDCDG00000002175) rnf145b (ENSDCDG00000001986) EBF1 (ENSDCDG00000001962) ##22 CLINT1 (ENSDCDG00000001938) ENSDCDG00000001931 HRH2 (ENSDCDG00000001925) ENSDCDG00000001920 npm1a (ENSDCDG00000001918) npm1a (ENSDCDG00000001915) kcnip1b (ENSDCDG00000001912) kcnip1b (ENSDCDG00000001900) npm1a (ENSDCDG00000001887) kcnip1b (ENSDCDG00000001875) npm1a (ENSDCDG00000001867) tlx3b (ENSDCDG00000001860) ugt5g2 (ENSDCDG00000001854) ponzr2 (ENSDCDG00000001848) cldn7b (ENSDCDG00000001842) Atlantic herring MODERN SPECIES 24 CRYBA1 (ENSCHAG00000018015) trarg1b (ENSCHAG00000017961) ENSCHAG00000017879 CLUH (ENSCHAG00000017011) ENSCHAG00000016974 ENSCHAG00000016966 mtmr1b (ENSCHAG00000016948) ENSCHAG00000016876 TRPC5 (ENSCHAG00000016821) ENSCHAG00000016803 dacha (ENSCHAG00000016790) ENSCHAG00000016761 stk26 (ENSCHAG00000016568) map4k6 (ENSCHAG00000015895) rnf145b (ENSCHAG00000015740) EBF1 (ENSCHAG00000014410) ##22 CLINT1 (ENSCHAG00000014354) ENSCHAG00000014257 ENSCHAG00000014245 TCERG1 (ENSCHAG00000013892) ppp2r2bb (ENSCHAG00000013282) ##21 LIMK1 (ENSCHAG00000012978) tmem185 (ENSCHAG00000012879) ANKRD46 (ENSCHAG00000012855) atg4a (ENSCHAG00000012475) ENSCHAG00000012444 ENSCHAG00000011240 ENSCHAG00000011183 ENSCHAG00000011162 zgc:103508 (ENSCHAG00000011099) rnasekb (ENSCHAG00000011094) Otophysi ANCESTRAL SPECIES 137 ENSGT01030000234518.A.a.b ENSGT00950000182859.A.a.b.b.d.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00940000154998.a.a ENSGT00390000000483.a.a ENSGT00940000164716.B Characiphysae ANCESTRAL SPECIES 7 ENSGT00390000007552 ENSGT00940000165073.a.a ENSGT00940000154902 ENSGT00940000159818 ENSGT00940000158335 ENSGT00940000156656 ENSGT00940000159460 ENSGT00940000165959 ENSGT00510000047029 ENSGT00940000157427.j ENSGT00940000156381 ENSGT00940000153404.a ENSGT00940000166874 ENSGT00950000182972.a.a.a.a.a.e ENSGT01030000234518.A.a.b ENSGT00950000182859.A.a.b.b.d.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000008104 ENSGT00510000048574 ENSGT00940000166453.b ENSGT01000000214440.C ENSGT00390000002089.a.a.b ENSGT00730000111187.a.a ENSGT00940000160310.a ENSGT00940000166208 ENSGT00940000164608 ENSGT00620000087966.b ENSGT00390000007539.a Channel catfish MODERN SPECIES 9 nsg2 (ENSIPUG00000005503) cpeb4 (ENSIPUG00000005518) Bod1 (ENSIPUG00000005588) STC2 (ENSIPUG00000005604) ##32 BNIP1 (ENSIPUG00000005648) crebrf (ENSIPUG00000005676) ATP6V0E1 (ENSIPUG00000005718) pcyox1l (ENSIPUG00000005730) ENSIPUG00000005766 ##21 TCERG1 (ENSIPUG00000005815) mrm3b (ENSIPUG00000005839) ENSIPUG00000005856 EOLA1 (ENSIPUG00000005862) Map4k2 (ENSIPUG00000005883) rnf145 (ENSIPUG00000006067) EBF1 (ENSIPUG00000006093) ##22 CLINT1 (ENSIPUG00000006181) rars (ENSIPUG00000006210) ENSIPUG00000006259 sgcd (ENSIPUG00000006316) mrpl22 (ENSIPUG00000006432) Gemin5 (ENSIPUG00000006460) cnot8 (ENSIPUG00000006574) wwc1 (ENSIPUG00000006631) ARL10 (ENSIPUG00000006668) nop16 (ENSIPUG00000006682) grk6 (ENSIPUG00000006711) PRR7 (ENSIPUG00000006782) ENSIPUG00000006795 zgc:77151 (ENSIPUG00000006824) uimc1 (ENSIPUG00000006845) Characiphysae_b ANCESTRAL SPECIES 7 ENSGT00390000008975 ENSGT00390000007552 ENSGT00940000165073.a.a ENSGT00940000154902.ob ENSGT00940000159818 ENSGT00940000158335 ENSGT00940000156656 ENSGT00940000159460 ENSGT00940000165959 ENSGT00510000047029 ENSGT00940000157427.j ENSGT00940000156381 ENSGT00940000153404.a ENSGT00940000166874 ENSGT00950000182972.a.a.a.a.a.e ENSGT00950000182859.A.a.b.b.d.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000008104 ENSGT00510000048574 ENSGT00940000166453.b ENSGT01000000214440.C ENSGT00390000002089.a.a.b ENSGT00730000111187.a.a ENSGT00940000160310.a ENSGT00940000166208 ENSGT00940000164608 ENSGT00620000087966.b Characoidei ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.d.a ##22 Red-bellied piranha MODERN SPECIES 109 pdlim4 (ENSPNAG00000014621) p4ha2 (ENSPNAG00000014592) JAKMIP2 (ENSPNAG00000014515) dpysl3 (ENSPNAG00000014385) ##16 wdr55 (ENSPNAG00000014340) chm (ENSPNAG00000014315) dacha (ENSPNAG00000014289) ENSPNAG00000014257 alg13 (ENSPNAG00000014236) TRPC5 (ENSPNAG00000014126) hmgb3b (ENSPNAG00000014082) mtmr1b (ENSPNAG00000013998) EOLA1 (ENSPNAG00000013491) map4k6 (ENSPNAG00000002774) rnf145b (ENSPNAG00000002664) EBF1 (ENSPNAG00000002637) ##22 Electric eel MODERN SPECIES 459 EOLA1 (ENSEEEG00000014637) map4k6 (ENSEEEG00000014385) rnf145b (ENSEEEG00000014357) EBF1 (ENSEEEG00000014328) ##22 CLINT1 (ENSEEEG00000014320) ENSEEEG00000014318 TCERG1 (ENSEEEG00000014311) ENSEEEG00000014217 ENSEEEG00000014200 ##21 PCYOX1L (ENSEEEG00000014195) CREBRF (ENSEEEG00000014166) BNIP1 (ENSEEEG00000014162) STC2 (ENSEEEG00000014160) ##32 Cyprinoidei ANCESTRAL SPECIES 31 ENSGT00940000159868.a ENSGT00390000000973.a.a ENSGT00390000014635 ENSGT00940000159492 ENSGT00940000158625 ENSGT00940000153169.A.b.b.f ENSGT00950000182859.A.a.a.a ##22 ENSGT00940000156141.B ENSGT00530000063506.A ENSGT00530000063555.A.a.a ENSGT00950000183132.C ENSGT00390000001695 ENSGT00940000155341 ENSGT00940000155244.d ENSGT00940000153596.A ENSGT00950000182859.A.a.b.b.d.a ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000011206.b.b ENSGT00940000160854 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000016307 ENSGT00390000001733 ENSGT01030000234625.C ENSGT00940000158395 ENSGT00950000182938.b.b.b.a.b.b ENSGT00940000155007.m Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 309 ENSGT00390000001134.b.ab.b ENSGT00940000159922.a.a.i ENSGT01060000248594.e.a.d.b ENSGT00940000153299.a.b.a.a ENSGT00940000153669.b.p.b ENSGT00390000012182.pb ENSGT00940000166658.a.c ENSGT00940000157281.r.a.a ENSGT00950000182859.A.a.b.b.d.a.a ##22 ENSGT00940000155650.a.b.a ENSGT00940000157770.j.a ENSGT00950000182864.a.b.b.a.b.a.b.f ##21 ENSGT00390000011206.b.b.a ENSGT00390000007125.b.f ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b.h ##32 ENSGT00940000156198.c.b.b.b.a ENSGT00390000005989.a.b.a.b.g ##32 ENSGT00940000156198.c.b.b.b.b ENSGT00940000160357.f ENSGT00390000000483.a.a.a ENSGT00940000164716.B.d ENSGT00940000155857.f.b.f ENSGT00390000018781.z.a.a Goldfish MODERN SPECIES 40 tmem185 (ENSCARG00000041094) stk26 (ENSCARG00000040857) frmd7 (ENSCARG00000040753) CCNI2 (ENSCARG00000040736) septin8a (ENSCARG00000038729) SOWAHA (ENSCARG00000038612) ENSCARG00000038609 mep1ba (ENSCARG00000038602) TRPC5 (ENSCARG00000038549) hmgb3b (ENSCARG00000038532) mtmr1b (ENSCARG00000037892) ENSCARG00000037723 map4k6 (ENSCARG00000037620) ENSCARG00000037589 rnf145b (ENSCARG00000037460) EBF1 (ENSCARG00000036745) ##22 CLINT1 (ENSCARG00000036681) TCERG1 (ENSCARG00000036488) ppp2r2bb (ENSCARG00000036318) ##21 CREBRF (ENSCARG00000036267) STC2 (ENSCARG00000036259) ##32 bod1 (ENSCARG00000036253) cpeb4b (ENSCARG00000036035) msx2b (ENSCARG00000035982) ENSCARG00000035971 drd1b (ENSCARG00000035964) RAD50 (ENSCARG00000035313) il13 (ENSCARG00000035284) pou4f3 (ENSCARG00000035276) RBM27 (ENSCARG00000035200) LARS1 (ENSCARG00000034948) Cyprininae_a ANCESTRAL SPECIES 83 ENSGT00390000016675.e ENSGT00390000000378.d.a.o.a.f ENSGT00940000155585.b ENSGT00390000017203.d ENSGT00950000182987.c.a.b.a.e.a ENSGT00950000182994.A.b ENSGT00390000001134.b.ab.a.a ENSGT00940000159922.a.a.i ENSGT01060000248594.e.a.d.b ENSGT00940000153299.a.b.a.a ENSGT00940000153669.b.p.b ENSGT00390000012182.pb ENSGT00390000012182.qb ENSGT00940000166658.a.c ENSGT00940000157281.r.a.a ENSGT00950000182859.A.a.b.b.d.a.a ##22 ENSGT00940000155650.a.b.a ENSGT00940000157770.j.a ENSGT00950000182864.a.b.b.a.b.a.b.f.a ##21 ENSGT00390000011206.b.b.a ENSGT00390000007125.b.f ENSGT00390000014412.k.d ENSGT00390000005989.a.b.a.b.g ##32 ENSGT00940000156198.c.b.b.b.b ENSGT00940000154998.a.a.u ENSGT00390000000483.a.a.a ENSGT00940000164716.B.d ENSGT00940000155857.f.b.f ENSGT00390000018781.z.a.a ENSGT00990000209912.a ENSGT00940000160880.e Common carp reference MODERN SPECIES 38 tlr22 (ENSCCRG00000080320) hnf1bb (ENSCCRG00000018096) heatr6 (ENSCCRG00000018151) dynll2b (ENSCCRG00000056005) srsf1b (ENSCCRG00000079952) pigs (ENSCCRG00000029318) aldocb (ENSCCRG00000028962) chm (ENSCCRG00000029326) dacha (ENSCCRG00000074794) alg13 (ENSCCRG00000039010) ENSCCRG00000039080 hmgb3b (ENSCCRG00000039124) mtmr1b (ENSCCRG00000004352) map4k6 (ENSCCRG00000059691) rnf145b (ENSCCRG00000006311) ENSCCRG00000018557 ##22 CLINT1 (ENSCCRG00000031700) ENSCCRG00000031618 ppp2r2bb (ENSCCRG00000031606) ##21 ENSCCRG00000005935 CREBRF (ENSCCRG00000071548) BNIP1 (ENSCCRG00000005978) STC2 (ENSCCRG00000006015) ##32 bod1 (ENSCCRG00000058933) CPEB4 (ENSCCRG00000027289) nsg2 (ENSCCRG00000055410) ENSCCRG00000074707 msx2b (ENSCCRG00000061968) ENSCCRG00000024470 drd1b (ENSCCRG00000075305) ENSCCRG00000046555 Golden-line barbel MODERN SPECIES 90 srsf1b (ENSSGRG00000053750) pigs (ENSSGRG00000053751) aldocb (ENSSGRG00000053779) ENSSGRG00000054232 chm (ENSSGRG00000054233) dacha (ENSSGRG00000054235) alg13 (ENSSGRG00000054236) TRPC5 (ENSSGRG00000054238) hmgb3b (ENSSGRG00000054240) mtmr1b (ENSSGRG00000054242) ENSSGRG00000054244 ENSSGRG00000054246 map4k6 (ENSSGRG00000054251) ENSSGRG00000054341 rnf145b (ENSSGRG00000054345) EBF1 (ENSSGRG00000054348) ##22 ENSSGRG00000054351 CLINT1 (ENSSGRG00000054352) TCERG1 (ENSSGRG00000054353) ppp2r2bb (ENSSGRG00000054355) ##21 PCYOX1L (ENSSGRG00000054370) CREBRF (ENSSGRG00000054373) BNIP1 (ENSSGRG00000054374) STC2 (ENSSGRG00000054376) ##32 bod1 (ENSSGRG00000054377) CPEB4 (ENSSGRG00000054379) nsg2 (ENSSGRG00000054408) msx2b (ENSSGRG00000054409) drd1b (ENSSGRG00000054410) RAD50 (ENSSGRG00000054417) ENSSGRG00000054462 Cyprininae ANCESTRAL SPECIES 110 ENSGT00390000016675.f ENSGT00390000017203.c ENSGT00950000182987.c.a.b.a.e.b ENSGT00940000160082.a.b ENSGT00940000166642.f ENSGT00390000014139 ENSGT00950000182994.A.a ENSGT00390000001134.b.ab.a.b ENSGT00940000159922.a.a.j ENSGT01060000248594.e.a.d.a ENSGT00940000153299.a.b.a.b ENSGT00940000153669.b.p.a ENSGT00390000012182.qb ENSGT00940000166658.a.d ENSGT00940000157281.r.a.b ENSGT00950000182859.A.a.b.b.d.a.b ##22 ENSGT00940000155650.a.b.b ENSGT00940000161042 ENSGT00940000157770.j.b ENSGT00390000011206.b.a ENSGT00390000007125.b.e Goldfish MODERN SPECIES 13 srsf1b (ENSCARG00000010218) pigs (ENSCARG00000010251) aldocb (ENSCARG00000010346) ENSCARG00000010435 mrm3b (ENSCARG00000010445) ENSCARG00000010449 chm (ENSCARG00000010473) dacha (ENSCARG00000010526) alg13 (ENSCARG00000010575) TRPC5 (ENSCARG00000010615) hmgb3b (ENSCARG00000010657) mtmr1b (ENSCARG00000010701) ENSCARG00000011056 map4k6 (ENSCARG00000011148) rnf145b (ENSCARG00000013065) EBF1 (ENSCARG00000013117) ##22 CLINT1 (ENSCARG00000013940) ENSCARG00000013950 TCERG1 (ENSCARG00000013998) ENSCARG00000014632 #21 ENSCARG00000014636 ##21 PCYOX1L (ENSCARG00000014644) CREBRF (ENSCARG00000014657) ENSCARG00000014678 ENSCARG00000014778 irf1b (ENSCARG00000016132) ENSCARG00000016141 sar1b (ENSCARG00000016149) camlg (ENSCARG00000016166) ENSCARG00000016169 vdac1 (ENSCARG00000016185) Cyprininae_a ANCESTRAL SPECIES 62 ENSGT01100000263854.b.a ENSGT00390000000378.d.a.o.a.e ENSGT00940000164330.l ENSGT00390000017203.c ENSGT00950000182987.c.a.b.a.e.b ENSGT00940000160082.a.b ENSGT00940000166642.f ENSGT00390000014139 ENSGT00950000182994.A.a ENSGT00390000001134.b.ab.a.b ENSGT00940000159922.a.a.j ENSGT01060000248594.e.a.d.a ENSGT00940000153669.b.p.a ENSGT00940000166658.a.d ENSGT00940000157281.r.a.b ENSGT00950000182859.A.a.b.b.d.a.b ##22 ENSGT00940000155650.a.b.b ENSGT00940000161042 ENSGT00940000157770.j.b ENSGT00950000182864.a.b.b.a.b.a.b.f.b ##21 ENSGT00390000011206.b.b.b ENSGT00390000007125.b.e ENSGT00390000014412.k.c ENSGT00390000005989.a.b.a.b.h ##32 ENSGT00940000156198.c.b.b.b.a ENSGT00940000154998.a.a.v ENSGT00390000000483.a.a.b ENSGT00940000164716.B.c ENSGT00940000155857.f.b.e ENSGT00390000018781.z.a.b ENSGT00990000209912.b Common carp reference MODERN SPECIES 45 dynll2b (ENSCCRG00000058799) ENSCCRG00000022508 pigs (ENSCCRG00000022521) aldocb (ENSCCRG00000067286) ENSCCRG00000029273 mrm3b (ENSCCRG00000029278) ENSCCRG00000014148 chm (ENSCCRG00000014136) dacha (ENSCCRG00000062944) alg13 (ENSCCRG00000032980) ENSCCRG00000037088 mtmr1b (ENSCCRG00000017308) ENSCCRG00000020923 map4k6 (ENSCCRG00000020928) rnf145b (ENSCCRG00000020566) ENSCCRG00000072604 ##22 CLINT1 (ENSCCRG00000030822) ENSCCRG00000030818 ENSCCRG00000030282 ppp2r2bb (ENSCCRG00000030261) ##21 ENSCCRG00000057975 CREBRF (ENSCCRG00000078346) BNIP1 (ENSCCRG00000076550) STC2 (ENSCCRG00000070068) ##32 bod1 (ENSCCRG00000076101) CPEB4 (ENSCCRG00000029587) nsg2 (ENSCCRG00000054392) ENSCCRG00000055585 msx2b (ENSCCRG00000060099) ENSCCRG00000062661 drd1b (ENSCCRG00000057876) Golden-line barbel MODERN SPECIES 38 ENSSGRG00000045584 hnf1bb (ENSSGRG00000045579) heatr6 (ENSSGRG00000045575) ENSSGRG00000045574 dynll2b (ENSSGRG00000045555) pigs (ENSSGRG00000045552) ENSSGRG00000045551 mrm3b (ENSSGRG00000045545) chm (ENSSGRG00000045542) dacha (ENSSGRG00000045540) alg13 (ENSSGRG00000045539) TRPC5 (ENSSGRG00000045537) mtmr1b (ENSSGRG00000045352) map4k6 (ENSSGRG00000045168) rnf145b (ENSSGRG00000045155) EBF1 (ENSSGRG00000044050) ##22 ENSSGRG00000044028 CLINT1 (ENSSGRG00000044027) TCERG1 (ENSSGRG00000043989) ppp2r2bb (ENSSGRG00000043826) ##21 PCYOX1L (ENSSGRG00000043824) CREBRF (ENSSGRG00000043793) BNIP1 (ENSSGRG00000043791) STC2 (ENSSGRG00000043790) ##32 bod1 (ENSSGRG00000043789) cpeb4b (ENSSGRG00000043538) nsg2 (ENSSGRG00000043535) msx2b (ENSSGRG00000043534) drd1b (ENSSGRG00000043533) RAD50 (ENSSGRG00000043514) il13 (ENSSGRG00000043508) Zebrafish DUPLICATION Zebrafish MODERN SPECIES 13 lipia (ENSDARG00000007108) ENSDARG00000094753 kif20a (ENSDARG00000044491) cdc23 (ENSDARG00000044484) zgc:56585 (ENSDARG00000026236) wdr55 (ENSDARG00000007217) chm (ENSDARG00000003845) dacha (ENSDARG00000010132) alg13 (ENSDARG00000054374) TRPC5 (ENSDARG00000060837) hmgb3b (ENSDARG00000006408) mtmr1b (ENSDARG00000022378) ENSDARG00000111280 map4k6 (ENSDARG00000033444) rnf145b (ENSDARG00000032373) ENSDARG00000092635 ##22 EBF1 (ENSDARG00000069196) ##22 CLINT1 (ENSDARG00000089914) ENSDARG00000110481 cd74b (ENSDARG00000036628) rps14 (ENSDARG00000036629) ndst1b (ENSDARG00000103606) rbm22 (ENSDARG00000010238) ENSDARG00000104924 arl3l1 (ENSDARG00000111106) ENSDARG00000060200 SLC34A1 (ENSDARG00000054658) adra2db (ENSDARG00000054667) cnot6a (ENSDARG00000008255) ENSDARG00000075930 ENSDARG00000073704 Zebrafish MODERN SPECIES 13 ENSDARG00000094753 kif20a (ENSDARG00000044491) cdc23 (ENSDARG00000044484) zgc:56585 (ENSDARG00000026236) wdr55 (ENSDARG00000007217) chm (ENSDARG00000003845) dacha (ENSDARG00000010132) alg13 (ENSDARG00000054374) TRPC5 (ENSDARG00000060837) hmgb3b (ENSDARG00000006408) mtmr1b (ENSDARG00000022378) ENSDARG00000111280 map4k6 (ENSDARG00000033444) rnf145b (ENSDARG00000032373) ENSDARG00000092635 ##22 EBF1 (ENSDARG00000069196) ##22 CLINT1 (ENSDARG00000089914) ENSDARG00000110481 cd74b (ENSDARG00000036628) rps14 (ENSDARG00000036629) ndst1b (ENSDARG00000103606) rbm22 (ENSDARG00000010238) ENSDARG00000104924 arl3l1 (ENSDARG00000111106) ENSDARG00000060200 SLC34A1 (ENSDARG00000054658) adra2db (ENSDARG00000054667) cnot6a (ENSDARG00000008255) ENSDARG00000075930 ENSDARG00000073704 zgc:123105 (ENSDARG00000003127) Otomorpha ANCESTRAL SPECIES 221 ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT01060000248750 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT01030000235237 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.b.n ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 Otophysi ANCESTRAL SPECIES 75 ENSGT00940000159028 ENSGT00940000164655 ENSGT00870000136493.c ENSGT00940000156285 ENSGT00940000176119 ENSGT00940000156931 ENSGT00950000182950.A ENSGT00940000153727.a ENSGT00950000182994.A ENSGT00390000001134.b.ab ENSGT00940000159922.a.a ENSGT00940000153669.b.p ENSGT00390000012182 ENSGT00940000166658.a ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00940000161486 ENSGT00940000166023 ENSGT00940000153304.A ENSGT00940000159060 ENSGT00940000159149 ENSGT00940000159092 ENSGT00500000044890.b ENSGT00940000153737.a ENSGT00940000158987 ENSGT00940000165729 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000154325.a Characiphysae ANCESTRAL SPECIES 7 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000179769 ENSGT01030000235237 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00390000009693 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.b.n ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00940000156641.k.b ENSGT00390000007501 ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00940000161486 ENSGT00940000166023 ENSGT00940000153304.A ENSGT00940000159060 ENSGT00940000159149 ENSGT00940000159092 ENSGT00940000153737.a ENSGT00940000158987 ENSGT00940000165729 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000154325.a ENSGT00390000013235 Channel catfish MODERN SPECIES 27 CYFIP2 (ENSIPUG00000018665) itk (ENSIPUG00000018605) med7 (ENSIPUG00000018597) LONRF1 (ENSIPUG00000018548) GRIA1 (ENSIPUG00000018516) ENSIPUG00000018489 WNT8A (ENSIPUG00000018480) ENSIPUG00000018474 zgc:194246 (ENSIPUG00000018466) foxi1e (ENSIPUG00000018458) ENSIPUG00000018444 afap1l1 (ENSIPUG00000018335) ablim3 (ENSIPUG00000018280) SH3TC2 (ENSIPUG00000018204) ENSIPUG00000018187 ebf1 (ENSIPUG00000018125) ##22 CLINT1 (ENSIPUG00000018092) lsm11 (ENSIPUG00000018086) ZBTB3 (ENSIPUG00000018082) rnaseh2c (ENSIPUG00000018044) trmt12 (ENSIPUG00000018011) SYTL4 (ENSIPUG00000017973) srpx2 (ENSIPUG00000017961) tspan7 (ENSIPUG00000017920) ENSIPUG00000017870 cstf2 (ENSIPUG00000017839) nox1 (ENSIPUG00000017799) Xk (ENSIPUG00000017780) arl13a (ENSIPUG00000017720) tmem35a (ENSIPUG00000017714) CENPI (ENSIPUG00000017661) Characiphysae_b ANCESTRAL SPECIES 146 ENSGT00390000012182 ENSGT00940000166658.a ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00940000161486 ENSGT00940000166023 ENSGT00940000153304.A ENSGT00940000159060 ENSGT00940000159149 ENSGT00940000159092 ENSGT00940000153737.a ENSGT00940000158987 ENSGT00940000165729 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000154325.a ENSGT00390000013235 Characoidei ANCESTRAL SPECIES 2 ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000179769 ENSGT01030000235237 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00390000009693 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.b.n ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00940000156641.k.b ENSGT00390000012630.A.b ENSGT00940000166658.a ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00940000161486 ENSGT00940000166023 ENSGT00940000153304.A ENSGT00940000159060 ENSGT00940000159149 ENSGT00940000159092 ENSGT00940000153737.a ENSGT00940000158987 ENSGT00940000165729 ENSGT00390000003231.a ENSGT00940000161284 ENSGT00940000154325.a ENSGT00390000013235 Red-bellied piranha MODERN SPECIES 56 ENSPNAG00000020146 WNT8A (ENSPNAG00000020116) ENSPNAG00000020109 ENSPNAG00000020065 zgc:194246 (ENSPNAG00000020055) foxi3b (ENSPNAG00000020052) ENSPNAG00000020045 pttg1 (ENSPNAG00000020030) afap1l1a (ENSPNAG00000020021) ablim3 (ENSPNAG00000019976) SH3TC2 (ENSPNAG00000006468) adrb2a (ENSPNAG00000019838) UBTD2 (ENSPNAG00000019833) il12ba (ENSPNAG00000005879) RNF145 (ENSPNAG00000019400) ebf3a (ENSPNAG00000019350) ##22 clint1a (ENSPNAG00000019182) LSM11 (ENSPNAG00000019128) ZBTB3 (ENSPNAG00000019119) rnaseh2c (ENSPNAG00000019111) trmt12 (ENSPNAG00000019028) sytl4 (ENSPNAG00000005144) SRPX2 (ENSPNAG00000019001) tspan7 (ENSPNAG00000018991) ENSPNAG00000018925 cstf2 (ENSPNAG00000018887) nox1 (ENSPNAG00000018857) xkrx (ENSPNAG00000018809) arl13a (ENSPNAG00000018795) tmem35 (ENSPNAG00000018748) CENPI (ENSPNAG00000018731) Mexicana tetra MODERN SPECIES 16 flt4 (ENSAMXG00000001322) trim105 (ENSAMXG00000032694) npy7r (ENSAMXG00000026043) prelid1a (ENSAMXG00000038989) ENSAMXG00000035984 pttg1 (ENSAMXG00000007324) afap1l1a (ENSAMXG00000007308) ablim3 (ENSAMXG00000007158) SH3TC2 (ENSAMXG00000001194) ENSAMXG00000026033 adrb2a (ENSAMXG00000026034) ENSAMXG00000034568 il12ba (ENSAMXG00000001197) ENSAMXG00000040860 RNF145 (ENSAMXG00000038735) ebf3a (ENSAMXG00000001200) ##22 clint1a (ENSAMXG00000001202) LSM11 (ENSAMXG00000033820) ENSAMXG00000044033 rnaseh2c (ENSAMXG00000001210) trmt12 (ENSAMXG00000040366) sytl4 (ENSAMXG00000001212) SRPX2 (ENSAMXG00000040946) tspan7 (ENSAMXG00000043884) ENSAMXG00000039235 cstf2 (ENSAMXG00000021477) nox1 (ENSAMXG00000021484) xkrx (ENSAMXG00000031510) arl13a (ENSAMXG00000021495) tmem35 (ENSAMXG00000030227) CENPI (ENSAMXG00000021502) Electric eel MODERN SPECIES 425 RNF145 (ENSEEEG00000016952) ebf3a (ENSEEEG00000016949) ##22 clint1a (ENSEEEG00000016938) LSM11 (ENSEEEG00000016936) ZBTB3 (ENSEEEG00000016935) rnaseh2c (ENSEEEG00000016934) trmt12 (ENSEEEG00000016933) sytl4 (ENSEEEG00000016932) SRPX2 (ENSEEEG00000016931) tspan7 (ENSEEEG00000016929) ENSEEEG00000016923 cstf2 (ENSEEEG00000016914) nox1 (ENSEEEG00000016911) xkrx (ENSEEEG00000016906) arl13a (ENSEEEG00000016905) tmem35 (ENSEEEG00000016904) CENPI (ENSEEEG00000016902) Cyprinoidei ANCESTRAL SPECIES 9 ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000179769 ENSGT01030000235237 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00390000009693 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.b.n ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.b ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00940000161486 ENSGT00940000166023 ENSGT00940000153304.A ENSGT00940000159060 ENSGT00940000159149 ENSGT00940000160322 ENSGT00390000006394 ENSGT00940000158645 ENSGT00940000156344.b ENSGT00940000156950.a ENSGT00420000029769.b ENSGT00390000012574 ENSGT00940000156950.b Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 43 ENSGT00940000167593.e.a ENSGT00940000157840.a.b ENSGT00940000157840.b.b ENSGT00940000156835.l.a.a.b ENSGT01030000235237.b ENSGT00940000164576.b.a.a.h ENSGT00940000166663.b ENSGT00390000009693.fb ENSGT00950000183067.a.b.a.d.b ENSGT00950000182850.a.b.a.b.b.n.a ENSGT00530000063812.B.h ENSGT00940000159538.g.a.a ENSGT00390000007501 ENSGT00390000012630.A.b.b ENSGT00940000157281.r.b.a ENSGT00950000182859.A.a.b.b.d.b.a ##22 ENSGT00940000155650.a.a.g ENSGT00390000012944 ENSGT00940000161486.g ENSGT00940000166023.a ENSGT00940000153304.A.c ENSGT00940000159060.b ENSGT00940000159149.d ENSGT00940000160322.b ENSGT00390000006394.b ENSGT00940000158645.g.b ENSGT00940000158645.h ENSGT00940000156344.b.e ENSGT00940000156950.a.d ENSGT00420000029769.b.j ENSGT00390000012574.j.a Goldfish MODERN SPECIES 5 ENSCARG00000058782 WNT8A (ENSCARG00000058750) ENSCARG00000058705 ENSCARG00000058688 zgc:194246 (ENSCARG00000058675) foxi3b (ENSCARG00000058659) ENSCARG00000058596 pttg1 (ENSCARG00000058576) afap1l1a (ENSCARG00000058547) ablim3 (ENSCARG00000057890) SH3TC2 (ENSCARG00000057731) adrb2a (ENSCARG00000057714) EFCAB9 (ENSCARG00000057711) il12ba (ENSCARG00000057679) RNF145 (ENSCARG00000057629) ebf3a (ENSCARG00000055166) ##22 clint1a (ENSCARG00000054975) LSM11 (ENSCARG00000054958) ZBTB3 (ENSCARG00000054952) rnaseh2c (ENSCARG00000054918) trmt12 (ENSCARG00000054889) SRPX2 (ENSCARG00000054859) sytl4 (ENSCARG00000054828) SSH3 (ENSCARG00000054753) mrpl18 (ENSCARG00000054745) elovl6 (ENSCARG00000054719) SYNPO (ENSCARG00000054702) tspan17 (ENSCARG00000054628) ENSCARG00000054606 LRRTM2 (ENSCARG00000054595) ctnna1 (ENSCARG00000053916) Cyprininae_a ANCESTRAL SPECIES 97 ENSGT00440000033329.a.a.a.e ENSGT00940000157342.c.a.a ENSGT00940000167593.e.a ENSGT00940000157840.a.b ENSGT00940000157840.b.b ENSGT00940000156835.l.a.a.b ENSGT01030000235237.b ENSGT00940000164576.b.a.a.h ENSGT00950000183067.a.b.a.d.b ENSGT00950000182850.a.b.a.b.b.n.a ENSGT00530000063812.B.h ENSGT00940000159538.g.a.a ENSGT00390000007501 ENSGT00390000012630.A.b.b ENSGT00940000157281.r.b.a ENSGT00950000182859.A.a.b.b.d.b.a ##22 ENSGT00940000155650.a.a.g ENSGT00390000012944 ENSGT00940000161486.g ENSGT00940000153304.A.c ENSGT00940000159060.b ENSGT00940000159149.d ENSGT00940000160322.b ENSGT00940000158645.h ENSGT00940000156344.b.e ENSGT00940000156950.a.d ENSGT00420000029769.b.j ENSGT00390000012574.j.a ENSGT00940000167634.c ENSGT00940000167634.d.b ENSGT00940000154518.a.e Common carp reference MODERN SPECIES 35 gria1a (ENSCCRG00000035631) ENSCCRG00000082902 ENSCCRG00000073085 ENSCCRG00000054631 ENSCCRG00000054166 zgc:194246 (ENSCCRG00000035761) foxi3b (ENSCCRG00000073939) afap1l1a (ENSCCRG00000035746) ENSCCRG00000028249 ablim3 (ENSCCRG00000058203) SH3TC2 (ENSCCRG00000035858) adrb2a (ENSCCRG00000035856) ENSCCRG00000035854 il12ba (ENSCCRG00000032928) RNF145 (ENSCCRG00000032860) ebf3a (ENSCCRG00000060568) ##22 clint1a (ENSCCRG00000053927) LSM11 (ENSCCRG00000073242) ENSCCRG00000071752 trmt12 (ENSCCRG00000060895) sytl4 (ENSCCRG00000050668) ENSCCRG00000081130 ENSCCRG00000012911 PDGFC (ENSCCRG00000018720) glrbb (ENSCCRG00000016043) gria2b (ENSCCRG00000067734) GASK1B (ENSCCRG00000074349) tmem144b (ENSCCRG00000029120) adh5l (ENSCCRG00000077152) zgc:77938 (ENSCCRG00000062627) pitx2 (ENSCCRG00000043209) Golden-line barbel MODERN SPECIES 329 gria1a (ENSSGRG00000021261) ENSSGRG00000021262 ENSSGRG00000021263 ENSSGRG00000021264 zgc:194246 (ENSSGRG00000021265) foxi3b (ENSSGRG00000021266) pttg1 (ENSSGRG00000021268) afap1l1a (ENSSGRG00000021269) ablim3 (ENSSGRG00000021270) SH3TC2 (ENSSGRG00000021298) adrb2a (ENSSGRG00000021299) EFCAB9 (ENSSGRG00000021300) ENSSGRG00000021302 il12ba (ENSSGRG00000021303) ebf3a (ENSSGRG00000021317) ##22 clint1a (ENSSGRG00000021767) LSM11 (ENSSGRG00000021775) rnaseh2c (ENSSGRG00000021778) ZBTB3 (ENSSGRG00000021781) trmt12 (ENSSGRG00000021782) sytl4 (ENSSGRG00000021785) SRPX2 (ENSSGRG00000021790) ENSSGRG00000021872 mrpl18 (ENSSGRG00000021873) PDGFC (ENSSGRG00000021887) glrbb (ENSSGRG00000022094) gria2b (ENSSGRG00000022206) GASK1B (ENSSGRG00000027064) tmem144b (ENSSGRG00000027066) adh5l (ENSSGRG00000027074) Cyprininae ANCESTRAL SPECIES 394 ENSGT00940000157342.c.a.b.b ENSGT00940000167593.e.b ENSGT00940000157840.a.a ENSGT00940000157840.b.a ENSGT00940000156835.l.a.a.a ENSGT01030000235237.a ENSGT00940000164576.b.a.a.g ENSGT00940000166663.a ENSGT00390000009693.gb ENSGT00950000183067.a.b.a.d.a ENSGT00950000182850.a.b.a.b.b.n.b ENSGT00530000063812.B.g ENSGT00940000159538.g.a.b ENSGT00390000012630.A.b.a ENSGT00940000157281.r.b.b ENSGT00950000182859.A.a.b.b.d.b.b ##22 ENSGT00940000155650.a.a.h ENSGT00940000161486.h ENSGT00940000166023.b ENSGT00940000153304.A.d ENSGT00940000159060.a ENSGT00940000159149.c ENSGT00940000160322.a ENSGT00390000006394.a ENSGT00940000158645.g.a ENSGT00940000156344.b.f ENSGT00940000156950.a.c ENSGT00420000029769.b.i ENSGT00390000012574.j.b Goldfish DUPLICATION Goldfish MODERN SPECIES 32 mospd1 (ENSCARG00000014354) ints6l (ENSCARG00000014377) mmgt1 (ENSCARG00000014623) slc9a6a (ENSCARG00000014722) fhl1a (ENSCARG00000017045) MAP7D3 (ENSCARG00000017087) tmtops3a (ENSCARG00000017157) cd40lg (ENSCARG00000017172) ARHGEF6 (ENSCARG00000017195) rbmx (ENSCARG00000017271) ENSCARG00000036855 zic3 (ENSCARG00000037095) zic6 (ENSCARG00000037156) il12ba (ENSCARG00000037182) RNF145 (ENSCARG00000037248) ebf3a (ENSCARG00000037416) ##22 clint1a (ENSCARG00000037521) rnaseh2c (ENSCARG00000037611) ZBTB3 (ENSCARG00000037646) sytl4 (ENSCARG00000037669) SRPX2 (ENSCARG00000037755) ENSCARG00000037919 mrpl18 (ENSCARG00000037951) PDGFC (ENSCARG00000037967) glrbb (ENSCARG00000037991) gria2b (ENSCARG00000038057) SASH3 (ENSCARG00000039120) zdhhc9 (ENSCARG00000039137) itk (ENSCARG00000039149) ENSCARG00000039211 ENSCARG00000039223 Goldfish MODERN SPECIES 32 ENSCARG00000020330 gria1a (ENSCARG00000020365) ENSCARG00000020419 ENSCARG00000020426 ENSCARG00000020431 zgc:194246 (ENSCARG00000020438) foxi3b (ENSCARG00000020446) ENSCARG00000020457 pttg1 (ENSCARG00000020532) afap1l1a (ENSCARG00000020537) ablim3 (ENSCARG00000020588) SH3TC2 (ENSCARG00000021607) adrb2a (ENSCARG00000021626) il12ba (ENSCARG00000021635) RNF145 (ENSCARG00000021649) ebf3a (ENSCARG00000021736) ##22 clint1a (ENSCARG00000021906) rnaseh2c (ENSCARG00000021971) ZBTB3 (ENSCARG00000021988) sytl4 (ENSCARG00000021992) SRPX2 (ENSCARG00000022029) ENSCARG00000022070 mrpl18 (ENSCARG00000022092) PDGFC (ENSCARG00000022101) glrbb (ENSCARG00000022109) gria2b (ENSCARG00000022122) GASK1B (ENSCARG00000022320) pitx2 (ENSCARG00000022396) elovl6 (ENSCARG00000022412) ENSCARG00000022447 lrit3a (ENSCARG00000022449) Cyprininae_a ANCESTRAL SPECIES 50 ENSGT00940000167593.f ENSGT00940000167593.e.b ENSGT00940000157840.a.a ENSGT00940000157840.b.a ENSGT00940000156835.l.a.a.a ENSGT01030000235237.a ENSGT00940000164576.b.a.a.g ENSGT00940000166663.a ENSGT00390000009693.gb ENSGT00950000183067.a.b.a.d.a ENSGT00950000182850.a.b.a.b.b.n.b ENSGT00530000063812.B.g ENSGT00940000159538.g.a.b ENSGT00390000012630.A.b.a ENSGT00940000157281.r.b.b ENSGT00950000182859.A.a.b.b.d.b.b ##22 ENSGT00940000155650.a.a.h ENSGT00940000161486.h ENSGT00940000166023.b ENSGT00940000153304.A.d ENSGT00940000159060.a ENSGT00940000159149.c ENSGT00940000160322.a ENSGT00390000006394.a ENSGT00940000158645.g.a ENSGT00940000156344.b.f ENSGT00940000156950.a.c ENSGT00420000029769.b.i ENSGT00390000012574.j.b Common carp reference MODERN SPECIES 20 ENSCCRG00000008609 ENSCCRG00000014538 gria1a (ENSCCRG00000064017) ENSCCRG00000074841 ENSCCRG00000052561 ENSCCRG00000082587 ENSCCRG00000052568 foxi3b (ENSCCRG00000052574) ENSCCRG00000052576 afap1l1a (ENSCCRG00000052582) ablim3 (ENSCCRG00000046571) SH3TC2 (ENSCCRG00000053204) adrb2a (ENSCCRG00000055158) il12ba (ENSCCRG00000061591) RNF145 (ENSCCRG00000037085) ebf3a (ENSCCRG00000051070) ##22 clint1a (ENSCCRG00000051054) ENSCCRG00000082456 rnaseh2c (ENSCCRG00000075716) trmt12 (ENSCCRG00000050670) ENSCCRG00000050968 ENSCCRG00000050953 mrpl18 (ENSCCRG00000036088) PDGFC (ENSCCRG00000050934) glrbb (ENSCCRG00000010375) gria2b (ENSCCRG00000062450) GASK1B (ENSCCRG00000023534) tmem144b (ENSCCRG00000023536) ENSCCRG00000056470 pitx2 (ENSCCRG00000078107) ELOVL6 (ENSCCRG00000043218) Golden-line barbel MODERN SPECIES 501 adrb2a (ENSSGRG00000022718) EFCAB9 (ENSSGRG00000022717) il12ba (ENSSGRG00000022716) RNF145 (ENSSGRG00000022715) ENSSGRG00000022714 ebf3a (ENSSGRG00000022658) ##22 clint1a (ENSSGRG00000022646) LSM11 (ENSSGRG00000022643) ZBTB3 (ENSSGRG00000022642) ZBTB3 (ENSSGRG00000022641) rnaseh2c (ENSSGRG00000022640) trmt12 (ENSSGRG00000022639) sytl4 (ENSSGRG00000022636) SRPX2 (ENSSGRG00000022632) ENSSGRG00000022630 mrpl18 (ENSSGRG00000022629) glrbb (ENSSGRG00000022614) gria2b (ENSSGRG00000022299) ENSSGRG00000022289 zgc:77938 (ENSSGRG00000022288) Zebrafish MODERN SPECIES 5 ENSDARG00000092970 wnt8a (ENSDARG00000052910) wnt8-2 (ENSDARG00000078507) ENSDARG00000036215 ENSDARG00000095092 zgc:194246 (ENSDARG00000092889) foxi3b (ENSDARG00000009550) ENSDARG00000020901 pttg1 (ENSDARG00000075421) afap1l1a (ENSDARG00000089162) ablim3 (ENSDARG00000088168) SH3TC2 (ENSDARG00000089917) adrb2a (ENSDARG00000088124) il12ba (ENSDARG00000033727) RNF145 (ENSDARG00000002609) ebf3a (ENSDARG00000099849) ##22 clint1a (ENSDARG00000025535) LSM11 (ENSDARG00000090854) ZBTB3 (ENSDARG00000036235) rnaseh2c (ENSDARG00000089637) trmt12 (ENSDARG00000060338) sytl4 (ENSDARG00000102433) SRPX2 (ENSDARG00000034559) ENSDARG00000079591 mrpl18 (ENSDARG00000060199) PDGFC (ENSDARG00000077588) glrbb (ENSDARG00000052769) gria2b (ENSDARG00000052765) GASK1B (ENSDARG00000077054) tmem144b (ENSDARG00000036247) adh5l (ENSDARG00000087262) Euteleosteomorpha DUPLICATION Euteleosteomorpha DUPLICATION Euteleosteomorpha ANCESTRAL SPECIES 69 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT01030000235237 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Protacanthopterygii ANCESTRAL SPECIES 19 ENSGT00940000163328.c ENSGT00940000165206.d ENSGT00940000158334 ENSGT00940000156901.A.d ENSGT00940000168499 ENSGT00940000153203.A.a ENSGT00940000158603 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000007501 ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.b.d ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a Northern pike MODERN SPECIES 3 RUFY1 (ENSELUG00000006741) hbegfa (ENSELUG00000006753) rmnd5b (ENSELUG00000006778) ENSELUG00000006800 zgc:194246 (ENSELUG00000000219) foxi3b (ENSELUG00000006819) ENSELUG00000006843 afap1l1a (ENSELUG00000006908) ABLIM3 (ENSELUG00000006966) SH3TC2 (ENSELUG00000007026) adrb2a (ENSELUG00000007046) ENSELUG00000033617 ENSELUG00000007054 il12ba (ENSELUG00000007092) ENSELUG00000026279 EBF1 (ENSELUG00000007199) ##22 clint1a (ENSELUG00000001078) LSM11 (ENSELUG00000007280) zdhhc24 (ENSELUG00000007297) rnaseh2c (ENSELUG00000007345) ZBTB3 (ENSELUG00000007359) trpt1 (ENSELUG00000007385) fermt3b (ENSELUG00000007439) FLRT1 (ENSELUG00000007458) macrod1 (ENSELUG00000007504) ccdc88b (ENSELUG00000007573) rom1b (ENSELUG00000007608) SCYL1 (ENSELUG00000007658) ENSELUG00000007734 INTS5 (ENSELUG00000007756) GANAB (ENSELUG00000007856) Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 143 ENSGT00940000159538.g.a.e ENSGT00950000182850.a.b.a.b.a.b.g.a ENSGT00530000063812.B.c.b ENSGT00940000159538.g.a.f ENSGT00390000007501 ENSGT00390000012630.A.b.d ENSGT00950000182859.A.a.b.b.d.c.a.a.b ##22 ENSGT00940000155650.a.a.f ENSGT00390000012630.A.b.c ENSGT00940000154967.a.a.b ENSGT00950000182859.A.a.b.b.d.c.a.a.a ##22 ENSGT00940000155650.a.a.e ENSGT00390000012944.j ENSGT00390000011705.v.b ENSGT00390000011705.u ENSGT00940000159624.g ENSGT01030000234518.A.a.b.h ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866.a.a ENSGT00390000014412.l.c ENSGT00940000158996.m.a ENSGT00390000005989.a.b.a.a.a ##32 ENSGT00940000154998.a.b.a.a ENSGT00940000164716.A.c ENSGT00940000155857.f.a.a Salmoninae_a ANCESTRAL SPECIES 41 ENSGT00940000164576.b.a.a.e ENSGT00940000166663 ENSGT00950000183067.a.b.a.d.d ENSGT00950000182850.a.b.a.b.a.b.h ENSGT00530000063812.B.c.a ENSGT00940000159538.g.a.e ENSGT00950000182850.a.b.a.b.a.b.g.a ENSGT00530000063812.B.c.b ENSGT00940000159538.g.a.f ENSGT00390000007501 ENSGT00390000012630.A.b.d ENSGT00950000182859.A.a.b.b.d.c.a.a.b ##22 ENSGT00940000155650.a.a.f ENSGT00390000012630.A.b.c ENSGT00940000154967.a.a.b ENSGT00950000182859.A.a.b.b.d.c.a.a.a ##22 ENSGT00940000155650.a.a.e ENSGT00390000012944.j ENSGT00390000011705.v.b ENSGT00390000011705.u ENSGT00940000159624.g ENSGT01030000234518.A.a.b.h ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b ##21 ENSGT00390000014165.j ENSGT00940000156866.a.b ENSGT00390000014412.l.d ENSGT00940000158996.m.b ENSGT00390000005989.a.b.a.a.b ##32 ENSGT00940000154998.a.b.a.b ENSGT00940000164716.A.d ENSGT00940000155857.f.a.b Salmo ANCESTRAL SPECIES 47 ENSGT00940000165206.d.b ENSGT00940000158334.g.a ENSGT00940000156901.A.d.d ENSGT00940000168499.a ENSGT00940000153203.A.a.c.a.a ENSGT00940000158603.c ENSGT00940000164576.b.a.a.e ENSGT00940000166663 ENSGT00950000183067.a.b.a.d.d ENSGT00950000182850.a.b.a.b.a.b.h ENSGT00530000063812.B.c.a ENSGT00940000159538.g.a.e ENSGT00390000007501.f ENSGT00390000012630.A.b.c ENSGT00940000154967.a.a.b ENSGT00950000182859.A.a.b.b.d.c.a.a.a ##22 ENSGT00940000155650.a.a.e ENSGT00390000012944.j ENSGT00390000011705.u ENSGT00940000159624.g ENSGT01030000234518.A.a.b.h ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b ##21 ENSGT00390000014165.j ENSGT00940000156866.a.b ENSGT00390000014412.l.d ENSGT00940000158996.m.b ENSGT00390000005989.a.b.a.a.b ##32 ENSGT00940000154998.a.b.a.b ENSGT00940000164716.A.d ENSGT00940000155857.f.a.b ENSGT00940000165959.c Atlantic salmon MODERN SPECIES 28 hbegfa (ENSSSAG00000039824) ENSSSAG00000106022 ENSSSAG00000085319 ENSSSAG00000040143 foxi3b (ENSSSAG00000040153) ENSSSAG00000068610 ENSSSAG00000040168 ENSSSAG00000087064 afap1l1a (ENSSSAG00000040443) ENSSSAG00000040583 SH3TC2 (ENSSSAG00000041691) ENSSSAG00000041803 ENSSSAG00000098102 il12ba (ENSSSAG00000041830) ENSSSAG00000041836 EBF1 (ENSSSAG00000041858) ##22 ENSSSAG00000044622 LSM11 (ENSSSAG00000044648) ENSSSAG00000044706 ENSSSAG00000087715 ENSSSAG00000044973 ENSSSAG00000104483 ##21 rpl26 (ENSSSAG00000045463) atp6v0e1 (ENSSSAG00000045502) ENSSSAG00000100909 BNIP1 (ENSSSAG00000084179) nkx2.5 (ENSSSAG00000045527) ENSSSAG00000093108 cpeb4a (ENSSSAG00000045556) msx2 (ENSSSAG00000045720) ENSSSAG00000045727 River trout MODERN SPECIES 4 ENSSTUG00000045393 hbegfa (ENSSTUG00000045420) ENSSTUG00000045434 rmnd5b (ENSSTUG00000045442) ENSSTUG00000045520 foxi3b (ENSSTUG00000045541) ENSSTUG00000045548 afap1l1a (ENSSTUG00000045558) ABLIM3 (ENSSTUG00000045596) SH3TC2 (ENSSTUG00000045662) ENSSTUG00000045920 adrb2a (ENSSTUG00000045922) ENSSTUG00000045926 il12ba (ENSSTUG00000045936) ENSSTUG00000045947 ENSSTUG00000045961 ##22 ENSSTUG00000046030 ENSSTUG00000046032 ENSSTUG00000046037 ENSSTUG00000046049 GPR151 (ENSSTUG00000046133) ENSSTUG00000046137 ##21 rpl26 (ENSSTUG00000046141) atp6v0e1 (ENSSTUG00000046147) BNIP1 (ENSSTUG00000046155) nkx2.5 (ENSSTUG00000046160) STC2 (ENSSTUG00000046164) ##32 ENSSTUG00000046170 cpeb4a (ENSSTUG00000046175) msx2a (ENSSTUG00000046254) DRD1 (ENSSTUG00000046258) Huchen MODERN SPECIES 2145 adrb2a (ENSHHUG00000004926) ENSHHUG00000004931 ENSHHUG00000004989 ENSHHUG00000005004 ##22 clint1a (ENSHHUG00000005053) thg1l (ENSHHUG00000005111) ENSHHUG00000005141 Salmoninae ANCESTRAL SPECIES 143 ENSGT00940000159538.g.a.e ENSGT00950000182850.a.b.a.b.a.b.g.a ENSGT00530000063812.B.c.b ENSGT00940000159538.g.a.f ENSGT00390000007501 ENSGT00390000012630.A.b.d ENSGT00950000182859.A.a.b.b.d.c.a.a.b ##22 ENSGT00940000155650.a.a.f ENSGT00390000012630.A.b.c ENSGT00940000154967.a.a.b ENSGT00950000182859.A.a.b.b.d.c.a.a.a ##22 ENSGT00940000155650.a.a.e ENSGT00390000012944.j ENSGT00390000011705.v.b ENSGT00390000011705.u ENSGT00940000159624.g ENSGT01030000234518.A.a.b.h ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866.a.a ENSGT00390000014412.l.c ENSGT00940000158996.m.a Salmoninae_a ANCESTRAL SPECIES 41 ENSGT00940000156901.A.d.d ENSGT00940000168499.a ENSGT00940000153203.A.a.c.a.a ENSGT00940000158603.c ENSGT00940000164576.b.a.a.e ENSGT00940000166663 ENSGT00950000183067.a.b.a.d.d ENSGT00950000182850.a.b.a.b.a.b.h ENSGT00530000063812.B.c.a ENSGT00940000159538.g.a.e ENSGT00950000182850.a.b.a.b.a.b.g.a ENSGT00530000063812.B.c.b ENSGT00940000159538.g.a.f ENSGT00390000007501 ENSGT00390000012630.A.b.d ENSGT00950000182859.A.a.b.b.d.c.a.a.b ##22 ENSGT00940000155650.a.a.f ENSGT00390000012630.A.b.c ENSGT00940000154967.a.a.b ENSGT00950000182859.A.a.b.b.d.c.a.a.a ##22 ENSGT00940000155650.a.a.e ENSGT00390000012944.j ENSGT00390000011705.v.b ENSGT00390000011705.u ENSGT00940000159624.g ENSGT01030000234518.A.a.b.h ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b ##21 ENSGT00390000014165.j ENSGT00940000156866.a.b ENSGT00390000014412.l.d ENSGT00940000158996.m.b Salmo ANCESTRAL SPECIES 24 ENSGT00940000163328.c.a.b ENSGT00940000165206.d.a ENSGT00940000158334.g.b ENSGT00940000156901.A.d.c ENSGT00940000168499.b ENSGT00940000153203.A.a.c.a.b ENSGT00940000158603.d ENSGT01030000235237.d ENSGT00940000164576.b.a.a.f ENSGT00950000183067.a.b.a.d.c ENSGT00950000182850.a.b.a.b.a.b.g.a ENSGT00530000063812.B.c.b ENSGT00940000159538.g.a.f ENSGT00390000007501.e ENSGT00390000012630.A.b.d ENSGT00950000182859.A.a.b.b.d.c.a.a.b ##22 ENSGT00940000155650.a.a.f ENSGT00390000012944.i ENSGT00390000011705.v.a ENSGT00940000159624.h ENSGT01030000234518.A.a.b.g ENSGT00950000182864.a.b.b.a.b.a.b.b.b ##21 ENSGT00390000014165.i ENSGT00940000156866.a.a ENSGT00390000014412.l.c ENSGT00940000158996.m.a ENSGT00390000005989.a.b.a.a.a ##32 ENSGT00940000154998.a.b.a.a ENSGT00940000164716.A.c ENSGT00940000155857.f.a.a ENSGT00940000165959.d River trout MODERN SPECIES 22 hnrnph1 (ENSSTUG00000001666) ENSSTUG00000001510 hbegfa (ENSSTUG00000001485) ENSSTUG00000001479 rmnd5b (ENSSTUG00000001443) ENSSTUG00000001432 foxi3b (ENSSTUG00000001426) afap1l1a (ENSSTUG00000001384) ABLIM3 (ENSSTUG00000001359) SH3TC2 (ENSSTUG00000001286) ENSSTUG00000001266 adrb2a (ENSSTUG00000001260) EFCAB9 (ENSSTUG00000001251) il12ba (ENSSTUG00000001143) ENSSTUG00000001134 EBF1 (ENSSTUG00000001083) ##22 ENSSTUG00000001066 clint1a (ENSSTUG00000001024) LSM11 (ENSSTUG00000001012) thg1l (ENSSTUG00000000985) ENSSTUG00000000666 GPR151 (ENSSTUG00000000621) ENSSTUG00000000598 ##21 rpl26 (ENSSTUG00000000591) atp6v0e1 (ENSSTUG00000000589) BNIP1 (ENSSTUG00000000585) nkx2.5 (ENSSTUG00000000583) STC2 (ENSSTUG00000000580) ##32 cpeb4a (ENSSTUG00000000569) msx2a (ENSSTUG00000000563) pin4 (ENSSTUG00000000539) Atlantic salmon MODERN SPECIES 24 ENSSSAG00000115941 hbegfa (ENSSSAG00000041283) ENSSSAG00000091861 ENSSSAG00000081971 ENSSSAG00000039848 ENSSSAG00000121770 ENSSSAG00000095964 zgc:194246 (ENSSSAG00000002338) ENSSSAG00000106889 afap1l1a (ENSSSAG00000068597) ENSSSAG00000068581 SH3TC2 (ENSSSAG00000044258) ENSSSAG00000119290 efcab9 (ENSSSAG00000068958) ENSSSAG00000068948 EBF1 (ENSSSAG00000115078) ##22 ENSSSAG00000068917 lsm11 (ENSSSAG00000068908) ENSSSAG00000068905 ENSSSAG00000044766 ENSSSAG00000112575 ENSSSAG00000070677 ENSSSAG00000099093 ENSSSAG00000119445 ##21 rl26 (ENSSSAG00000076707) ENSSSAG00000076705 nkx2.5 (ENSSSAG00000088975) ENSSSAG00000114367 cpeb4a (ENSSSAG00000076649) msx2a (ENSSSAG00000118332) ENSSSAG00000076628 Oncorhynchus ANCESTRAL SPECIES 45 ENSGT01030000234566.e.b.a.b.c.a.z.a ENSGT00940000165340.k.b ENSGT00940000165206.d.a ENSGT00940000158334.g.b ENSGT00940000156901.A.d.c ENSGT00940000168499.b ENSGT00940000153203.A.a.c.a.b ENSGT00940000158603.d ENSGT00940000164576.b.a.a.f ENSGT00950000183067.a.b.a.d.c ENSGT00950000182850.a.b.a.b.a.b.h.a ENSGT00530000063812.B.c.b ENSGT00940000159538.g.a.f ENSGT00390000007501 ENSGT00390000012630.A.b.d ENSGT00950000182859.A.a.b.b.d.c.a.a.b ##22 ENSGT00940000155650.a.a.f ENSGT00390000012944.i ENSGT00940000159624.h.b ENSGT01030000234518.A.a.b.g ENSGT00950000182864.a.b.b.a.b.a.b.b.b ##21 ENSGT00390000014165.i ENSGT00940000156866.a.a ENSGT00390000014412.l.c ENSGT00940000158996.m.a ENSGT00390000005989.a.b.a.a.a ##32 ENSGT00940000154998.a.b.a.a ENSGT00940000164716.A.c ENSGT00940000155857.f.a.a ENSGT00510000047029 ENSGT00940000157427.j Rainbow trout MODERN SPECIES 5 hnrnph1 (ENSOMYG00000011895) ENSOMYG00000011955 ENSOMYG00000012093 ENSOMYG00000060465 ENSOMYG00000012121 ENSOMYG00000048509 ENSOMYG00000069189 ENSOMYG00000012242 afap1l1a (ENSOMYG00000012254) ENSOMYG00000053543 SH3TC2 (ENSOMYG00000019579) ENSOMYG00000071793 ENSOMYG00000050866 ENSOMYG00000076178 ENSOMYG00000015114 EBF1 (ENSOMYG00000015081) ##22 ENSOMYG00000066391 LSM11 (ENSOMYG00000015096) ENSOMYG00000067774 ENSOMYG00000061851 ENSOMYG00000047910 ENSOMYG00000064582 ENSOMYG00000019500 ENSOMYG00000053239 ##21 rpl26 (ENSOMYG00000012270) VA0H (ENSOMYG00000054088) BNIP1 (ENSOMYG00000012295) nkx2.5 (ENSOMYG00000012307) STC2 (ENSOMYG00000043490) ##32 cpeb4a (ENSOMYG00000014504) ENSOMYG00000049259 Oncorhynchus_a ANCESTRAL SPECIES 313 ENSGT00530000063812.B.c.b ENSGT00940000159538.g.a.f ENSGT00390000007501 ENSGT00390000012630.A.b.d ENSGT00950000182859.A.a.b.b.d.c.a.a.b ##22 ENSGT00940000155650.a.b.d.b Coho salmon MODERN SPECIES 10 TENM2 (ENSOKIG00005037787) ENSOKIG00005038796 hnrnph1 (ENSOKIG00005039171) RUFY1 (ENSOKIG00005039317) hbegfa (ENSOKIG00005040047) rmnd5b (ENSOKIG00005040087) ENSOKIG00005040327 ENSOKIG00005040357 afap1l1a (ENSOKIG00005040370) ENSOKIG00005040391 SH3TC2 (ENSOKIG00005040449) ENSOKIG00005040534 ADRB2 (ENSOKIG00005040557) ENSOKIG00005040566 ENSOKIG00005040602 EBF1 (ENSOKIG00005040636) ##22 CLINT1 (ENSOKIG00005040748) LSM11 (ENSOKIG00005041226) ENSOKIG00005041247 ENSOKIG00005041385 GPR151 (ENSOKIG00005041698) ENSOKIG00005041714 ##21 ENSOKIG00005041725 rpl26 (ENSOKIG00005041732) atp6v0e1 (ENSOKIG00005041743) BNIP1 (ENSOKIG00005041757) nkx2.5 (ENSOKIG00005041764) STC2 (ENSOKIG00005041772) ##32 cpeb4a (ENSOKIG00005041790) msx2a (ENSOKIG00005041806) DRD1 (ENSOKIG00005041812) Chinook salmon DUPLICATION Chinook salmon MODERN SPECIES 13 nkx2.5 (ENSOTSG00005038119) STC2 (ENSOTSG00005038121) ##32 ENSOTSG00005038125 msx2a (ENSOTSG00005038163) DRD1 (ENSOTSG00005038164) TMEM131 (ENSOTSG00005038165) UBE3A (ENSOTSG00005038170) ENSOTSG00005038686 ENSOTSG00005038687 nudt15 (ENSOTSG00005038688) cpo (ENSOTSG00005038691) cpo (ENSOTSG00005038693) ENSOTSG00005038700 ENSOTSG00005038706 il12ba (ENSOTSG00005038709) ENSOTSG00005038715 ##22 ENSOTSG00005038722 cpo (ENSOTSG00005038725) nudt15 (ENSOTSG00005038729) cpo (ENSOTSG00005038732) ENSOTSG00005038737 CNGA3 (ENSOTSG00005039429) TMEM131 (ENSOTSG00005039430) kctd12b (ENSOTSG00005002577) znf711 (ENSOTSG00005002655) zgc:66447 (ENSOTSG00005002697) tmsb1 (ENSOTSG00005002814) SLC25A53 (ENSOTSG00005002816) prps1b (ENSOTSG00005002824) FRMPD3 (ENSOTSG00005002826) nsdhl (ENSOTSG00005002829) Chinook salmon MODERN SPECIES 106 ENSOTSG00005039007 adrb2a (ENSOTSG00005039085) ENSOTSG00005039087 ENSOTSG00005039096 ENSOTSG00005039098 il12ba (ENSOTSG00005039100) ENSOTSG00005039103 ##22 ENSOTSG00005039106 cpo (ENSOTSG00005039108) ENSOTSG00005039122 TMC7 (ENSOTSG00005043557) ENSOTSG00005043559 ENSOTSG00005043560 gsg1l (ENSOTSG00005043773) dtd1 (ENSOTSG00005043789) SLK (ENSOTSG00005043800) stn1 (ENSOTSG00005044154) SH3PXD2A (ENSOTSG00005044156) neurl1aa (ENSOTSG00005044159) ENSOTSG00005044161 Huchen MODERN SPECIES 3505 ENSHHUG00000020074 ##22 ENSHHUG00000020092 Salmoninae DUPLICATION Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 39 ENSGT00940000157061.b.k.b.a ENSGT00530000063371.C.a.c ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c ENSGT00940000160880.g ENSGT00510000046929.b.c ENSGT00390000012163.d Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a ##22 Oncorhynchus_a ANCESTRAL SPECIES 43 ENSGT00530000063371.C.a.c ENSGT00940000164705.f ENSGT00390000010712 ENSGT00940000156835.l.b.b ENSGT00940000164576.b.a.b.c ENSGT00550000074939.a ENSGT00390000005589.a.b.q ENSGT00950000183067.a.b.a.c.e.b ENSGT00950000182850.a.b.a.b.a.b.g.b.b ENSGT00950000182850.a.b.a.b.b.o ENSGT00940000159538.g.b.b ENSGT00940000156641.m.b ENSGT00390000012630.A.a.b ENSGT00390000010107.v ENSGT00940000157281.v ENSGT00950000182859.A.a.b.b.d.c.a.b.a.a ##22 ENSGT00950000182859.A.a.b.b.c.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00940000155650.a.b.c.b ENSGT00940000161042.c ENSGT00940000157770.a.b ENSGT00950000182864.a.b.b.a.b.a.b.a.b ##21 ENSGT00940000156866.b ENSGT00390000007125.b.a ENSGT00390000014412.k.a ENSGT00390000005989.a.b.a.b.a ##32 ENSGT00940000156198.c.b.d ENSGT00940000154998.a.a.w ENSGT00390000000483.a.a.d ENSGT00940000164716.B.a ENSGT00940000155857.f.b.c Coho salmon MODERN SPECIES 20 ENSOKIG00005037642 ENSOKIG00005037572 foxi3a (ENSOKIG00005037555) nhp2 (ENSOKIG00005037534) grpel2 (ENSOKIG00005037510) afap1l1b (ENSOKIG00005037475) ENSOKIG00005037461 ABLIM3 (ENSOKIG00005037308) adrb2b (ENSOKIG00005037279) ubtd2 (ENSOKIG00005037269) ENSOKIG00005037259 ENSOKIG00005037227 UBLCP1 (ENSOKIG00005037194) RNF145 (ENSOKIG00005037114) ENSOKIG00005037103 EBF1 (ENSOKIG00005037089) ##22 EBF1 (ENSOKIG00005037083) ##22 ENSOKIG00005037071 ##22 CLINT1 (ENSOKIG00005037005) TCERG1 (ENSOKIG00005036688) DLX6 (ENSOKIG00005036642) ENSOKIG00005036438 ##21 ATP6V0E1 (ENSOKIG00005036389) CREBRF (ENSOKIG00005036368) BNIP1 (ENSOKIG00005036339) STC2 (ENSOKIG00005036318) ##32 bod1 (ENSOKIG00005036294) CPEB4 (ENSOKIG00005035997) nsg2 (ENSOKIG00005035972) msx2b (ENSOKIG00005035967) drd1b (ENSOKIG00005035960) Chinook salmon MODERN SPECIES 23 ENSOTSG00005007417 septin8a (ENSOTSG00005005081) SOWAHA (ENSOTSG00005005073) ENSOTSG00005005072 AFF4 (ENSOTSG00005005070) zcchc10 (ENSOTSG00005005069) hspa4a (ENSOTSG00005004283) ENSOTSG00005004266 endou2 (ENSOTSG00005004263) NDFIP1 (ENSOTSG00005004020) adrb2b (ENSOTSG00005004018) ubtd2 (ENSOTSG00005004017) ENSOTSG00005004014 UBLCP1 (ENSOTSG00005004012) RNF145 (ENSOTSG00005003879) ENSOTSG00005003874 ##22 spry4 (ENSOTSG00005003872) fgf1b (ENSOTSG00005003871) ARHGAP26 (ENSOTSG00005003868) NR3C1 (ENSOTSG00005003629) yipf5 (ENSOTSG00005003618) kctd16b (ENSOTSG00005003616) GRXCR2 (ENSOTSG00005003615) ENSOTSG00005003614 ENSOTSG00005003611 RBM27 (ENSOTSG00005003606) pou4f3 (ENSOTSG00005003603) drd1b (ENSOTSG00005003602) msx2b (ENSOTSG00005003600) bod1 (ENSOTSG00005003597) STC2 (ENSOTSG00005003596) ##32 Huchen MODERN SPECIES 6053 ENSHHUG00000009694 ##22 Salmoninae ANCESTRAL SPECIES 584 ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 Huchen MODERN SPECIES 2845 ENSHHUG00000020440 ubtd2 (ENSHHUG00000020422) IL12B (ENSHHUG00000020409) UBLCP1 (ENSHHUG00000020386) RNF145 (ENSHHUG00000020354) EBF1 (ENSHHUG00000020350) ##22 Salmoninae_a ANCESTRAL SPECIES 4 ENSGT00940000165075.a.b.a.b ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042 ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00990000214210 ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b Salmo ANCESTRAL SPECIES 44 ENSGT00940000165075.a.b.a.b ENSGT00940000157061.b.k.b.b ENSGT00530000063371.C.a.d ENSGT00940000164705.e ENSGT00940000156835.l.b.a ENSGT00940000164576.b.a.b.d ENSGT00550000074939.b ENSGT00390000005589.a.b.r ENSGT00950000183067.a.b.a.c.e.a ENSGT00950000182850.a.b.a.b.b.p ENSGT00940000159538.g.b.a ENSGT00940000156641.m.a ENSGT00390000012630.A.a.a ENSGT00390000010107.u ENSGT00940000157281.u ENSGT00950000182859.A.a.b.b.d.c.a.b.a.b ##22 ENSGT00950000182859.A.a.a.a.e ##22 ENSGT00950000182859.A.a.b.b.c.a.a ##22 ENSGT00940000155650.a.b.c.a ENSGT00940000161042 ENSGT00940000157770.a.a ENSGT00950000182864.a.b.b.a.b.a.b.a.a ##21 ENSGT00390000011206.b ENSGT00990000214210 ENSGT00390000007125.b.b ENSGT00390000014412.k.b ENSGT00390000005989.a.b.a.b.b ##32 ENSGT00940000156198.c.b.c ENSGT00940000154998.a.a.x ENSGT00390000000483.a.a.c ENSGT00940000164716.B.b River trout MODERN SPECIES 6 ENSSTUG00000011088 fam53c (ENSSTUG00000011224) slbp2 (ENSSTUG00000011232) ENSSTUG00000011244 foxi3a (ENSSTUG00000011289) nhp2 (ENSSTUG00000011301) grpel2 (ENSSTUG00000011320) afap1l1b (ENSSTUG00000011335) ablim3 (ENSSTUG00000011402) adrb2b (ENSSTUG00000011494) ubtd2 (ENSSTUG00000011499) ENSSTUG00000011515 IL12B (ENSSTUG00000011518) UBLCP1 (ENSSTUG00000011536) RNF145 (ENSSTUG00000011631) EBF1 (ENSSTUG00000011739) ##22 ENSSTUG00000011744 ##22 CLINT1 (ENSSTUG00000011752) ENSSTUG00000011800 TCERG1 (ENSSTUG00000011818) ENSSTUG00000012111 ##21 PCYOX1L (ENSSTUG00000012245) ENSSTUG00000012264 CREBRF (ENSSTUG00000012271) BNIP1 (ENSSTUG00000012299) STC2 (ENSSTUG00000012322) ##32 bod1 (ENSSTUG00000012340) CPEB4 (ENSSTUG00000012363) nsg2 (ENSSTUG00000012611) msx2b (ENSSTUG00000012621) drd1b (ENSSTUG00000012628) Salmoninae ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.d.c.a.b.b ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.d.c.a.b.b ##22 Oncorhynchus ANCESTRAL SPECIES 34 ENSGT00940000163328.c.a.a ENSGT00940000153768.b.t.a.b.a.a.b ENSGT00940000165206.d.b ENSGT00940000158334.g.a ENSGT00940000156901.A.d.d ENSGT00940000153203.A.a.c.a.a ENSGT00940000158603.c ENSGT00940000164576.b.a.a.e ENSGT00940000166663 ENSGT00950000183067.a.b.a.d.d ENSGT00950000182850.a.b.a.b.a.b.h.b ENSGT00530000063812.B.c.a ENSGT00940000159538.g.a.e ENSGT00390000012630.A.b.c ENSGT00940000154967.a.a.b.i ENSGT00950000182859.A.a.b.b.d.c.a.b.b ##22 ENSGT00940000155650.a.a.e ENSGT00390000011705.v.a ENSGT00940000159624.g ENSGT01030000234518.A.a.b.h ENSGT00950000182864.a.b.b.a.b.a.b.b.a.b ##21 ENSGT00390000014165.j ENSGT00940000156866.a.b ENSGT00390000014412.l.d ENSGT00940000158996.m.b ENSGT00390000005989.a.b.a.a.b ##32 ENSGT00940000154998.a.b.a.b ENSGT00940000164716.A.d ENSGT00940000155857.f.a.b ENSGT00940000165959 ENSGT00940000156381.ab Rainbow trout MODERN SPECIES 23 ENSOMYG00000019667 ENSOMYG00000048809 foxi3b (ENSOMYG00000019630) ENSOMYG00000075117 afap1l1a (ENSOMYG00000019614) ENSOMYG00000072163 SH3TC2 (ENSOMYG00000071494) ENSOMYG00000052680 ENSOMYG00000058892 ENSOMYG00000072099 ENSOMYG00000071779 ENSOMYG00000072216 il12ba (ENSOMYG00000019564) ENSOMYG00000019558 ENSOMYG00000072987 EBF1 (ENSOMYG00000060398) ##22 ENSOMYG00000063906 ENSOMYG00000056049 ENSOMYG00000064299 LSM11 (ENSOMYG00000019530) ENSOMYG00000019519 ENSOMYG00000066045 ENSOMYG00000019494 ENSOMYG00000019485 ENSOMYG00000074061 ENSOMYG00000025217 ##21 rpl26 (ENSOMYG00000043506) atp6v0e1 (ENSOMYG00000061869) BNIP1 (ENSOMYG00000043498) nkx2.5 (ENSOMYG00000043495) STC2 (ENSOMYG00000067176) ##32 Oncorhynchus_a ANCESTRAL SPECIES 34 ENSGT00940000163328.c.a.a ENSGT00940000153768.b.t.a.b.a.a.b ENSGT00940000165206.d.b ENSGT00940000158334.g.a ENSGT00940000156901.A.d.d ENSGT00940000153203.A.a.c.a.a ENSGT00940000158603.c ENSGT00940000164576.b.a.a.e ENSGT00940000166663 ENSGT00950000183067.a.b.a.d.d ENSGT00950000182850.a.b.a.b.a.b.h.b ENSGT00530000063812.B.c.a ENSGT00940000159538.g.a.e ENSGT00390000012630.A.b.c ENSGT00940000154967.a.a.b.i ENSGT00950000182859.A.a.b.b.d.c.a.b.b ##22 ENSGT00940000155650.a.a.e ENSGT00390000011705.v.a ENSGT00940000159624.g ENSGT01030000234518.A.a.b.h ENSGT00390000014165.j ENSGT00940000156866.a.b ENSGT00390000014412.l.d ENSGT00940000158996.m.b ENSGT00390000005989.a.b.a.a.b ##32 ENSGT00940000154998.a.b.a.b ENSGT00940000164716.A.d ENSGT00940000155857.f.a.b ENSGT00940000165959 ENSGT00940000156381.ab ENSGT00390000010669 Coho salmon DUPLICATION Coho salmon MODERN SPECIES 6 hnrnph1 (ENSOKIG00005027387) ENSOKIG00005027181 hbegfa (ENSOKIG00005027158) ENSOKIG00005027147 RMND5B (ENSOKIG00005026915) ENSOKIG00005026900 foxi3b (ENSOKIG00005026891) ENSOKIG00005026883 ENSOKIG00005026877 ABLIM3 (ENSOKIG00005026342) SH3TC2 (ENSOKIG00005026136) adrb2a (ENSOKIG00005026111) il12ba (ENSOKIG00005026108) ENSOKIG00005026091 ENSOKIG00005026069 ENSOKIG00005026058 ##22 ENSOKIG00005026048 ENSOKIG00005026042 ##22 ENSOKIG00005026030 thg1l (ENSOKIG00005026021) ENSOKIG00005025343 GPR151 (ENSOKIG00005025245) rpl26 (ENSOKIG00005025221) atp6v0e1 (ENSOKIG00005025201) BNIP1 (ENSOKIG00005025175) nkx2.5 (ENSOKIG00005025165) STC2 (ENSOKIG00005041766) ##32 ENSOKIG00005041750 cpeb4a (ENSOKIG00005041606) msx2a (ENSOKIG00005041567) DRD1 (ENSOKIG00005041522) Coho salmon MODERN SPECIES 6 hbegfa (ENSOKIG00005027158) ENSOKIG00005027147 RMND5B (ENSOKIG00005026915) ENSOKIG00005026900 foxi3b (ENSOKIG00005026891) ENSOKIG00005026883 ENSOKIG00005026877 ABLIM3 (ENSOKIG00005026342) SH3TC2 (ENSOKIG00005026136) adrb2a (ENSOKIG00005026111) il12ba (ENSOKIG00005026108) ENSOKIG00005026091 ENSOKIG00005026069 ENSOKIG00005026058 ##22 ENSOKIG00005026048 ENSOKIG00005026042 ##22 ENSOKIG00005026030 thg1l (ENSOKIG00005026021) ENSOKIG00005025343 GPR151 (ENSOKIG00005025245) rpl26 (ENSOKIG00005025221) atp6v0e1 (ENSOKIG00005025201) BNIP1 (ENSOKIG00005025175) nkx2.5 (ENSOKIG00005025165) STC2 (ENSOKIG00005041766) ##32 ENSOKIG00005041750 cpeb4a (ENSOKIG00005041606) msx2a (ENSOKIG00005041567) DRD1 (ENSOKIG00005041522) nek12 (ENSOKIG00005041508) nxt2 (ENSOKIG00005041480) Chinook salmon MODERN SPECIES 28 aptx (ENSOTSG00005005264) elac1 (ENSOTSG00005005263) SMAD4 (ENSOTSG00005005261) MEX3C (ENSOTSG00005005259) ENSOTSG00005005256 ENSOTSG00005005255 ENSOTSG00005005254 ENSOTSG00005005253 ENSOTSG00005005251 bcl2l16 (ENSOTSG00005005250) ENSOTSG00005005248 ccn1l2 (ENSOTSG00005005246) FKBP15 (ENSOTSG00005000457) fgf17 (ENSOTSG00005000438) ENSOTSG00005000435 ENSOTSG00005000432 ##22 rchy1 (ENSOTSG00005000428) ENSOTSG00005000426 PDE4D (ENSOTSG00005000243) LZTS1 (ENSOTSG00005000235) ENSOTSG00005039320 bco2l (ENSOTSG00005037982) ENSOTSG00005037976 fam219ab (ENSOTSG00005037971) klf9 (ENSOTSG00005037970) TRPM3 (ENSOTSG00005037968) ENSOTSG00005037966 cemip2 (ENSOTSG00005035368) abhd17b (ENSOTSG00005035349) gda (ENSOTSG00005035260) zfand5a (ENSOTSG00005035258) Huchen MODERN SPECIES 6083 ENSHHUG00000014176 ##22 Acanthomorphata ANCESTRAL SPECIES 1 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT01030000235237 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Cod MODERN SPECIES 1 ENSGMOG00000036215 ENSGMOG00000023039 gria1a (ENSGMOG00000014490) ENSGMOG00000001977 ENSGMOG00000001956 ENSGMOG00000001947 zgc:194246 (ENSGMOG00000024122) foxi3b (ENSGMOG00000023911) ENSGMOG00000001922 afap1l1a (ENSGMOG00000001890) ablim3 (ENSGMOG00000001852) SH3TC2 (ENSGMOG00000001820) adrb2a (ENSGMOG00000001811) ENSGMOG00000032788 ENSGMOG00000015572 ebf3a (ENSGMOG00000015541) ##22 clint1a (ENSGMOG00000036912) LSM11 (ENSGMOG00000015497) ENSGMOG00000015482 ENSGMOG00000015440 ENSGMOG00000015432 ENSGMOG00000018383 ##21 rpl26 (ENSGMOG00000015401) atp6v0e1 (ENSGMOG00000029150) BNIP1 (ENSGMOG00000036420) NKX2-5 (ENSGMOG00000015370) ENSGMOG00000015364 ##32 cpeb4a (ENSGMOG00000023337) ENSGMOG00000027663 ENSGMOG00000015277 ENSGMOG00000031231 Euacanthomorphacea ANCESTRAL SPECIES 10 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT01030000235237 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Pinecone sodierfish MODERN SPECIES 1 itk (ENSMMDG00005022526) ENSMMDG00005022550 ENSMMDG00005022552 gria1a (ENSMMDG00005022559) ENSMMDG00005022606 WNT8A (ENSMMDG00005022609) ENSMMDG00005022610 zgc:194246 (ENSMMDG00005022613) foxi3b (ENSMMDG00005022614) ENSMMDG00005022617 afap1l1a (ENSMMDG00005022619) ablim3 (ENSMMDG00005022624) SH3TC2 (ENSMMDG00005022645) adrb2a (ENSMMDG00005022646) il12ba (ENSMMDG00005022654) EBF1 (ENSMMDG00005022694) ##22 clint1a (ENSMMDG00005022699) LSM11 (ENSMMDG00005022701) thg1l (ENSMMDG00005022703) thg1l (ENSMMDG00005022704) ADAM19 (ENSMMDG00005022706) GPR151 (ENSMMDG00005022716) ENSMMDG00005022719 ##21 rpl26 (ENSMMDG00005022729) atp6v0e1 (ENSMMDG00005022732) BNIP1 (ENSMMDG00005022734) nkx2.5 (ENSMMDG00005022739) STC2 (ENSMMDG00005022744) ##32 cpeb4a (ENSMMDG00005022749) msx2a (ENSMMDG00005022766) DRD1 (ENSMMDG00005022768) Percomorphaceae ANCESTRAL SPECIES 11 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Tiger tail seahorse MODERN SPECIES 332 itk (ENSHCOG00000002937) ENSHCOG00000000601 ENSHCOG00000002891 gria1a (ENSHCOG00000002856) ENSHCOG00000002837 WNT8A (ENSHCOG00000002830) ENSHCOG00000002816 ENSHCOG00000002802 foxi3b (ENSHCOG00000002793) ENSHCOG00000002788 afap1l1a (ENSHCOG00000002775) ablim3 (ENSHCOG00000002753) SH3TC2 (ENSHCOG00000002730) adrb2a (ENSHCOG00000000575) il12ba (ENSHCOG00000002702) ebf3a (ENSHCOG00000002667) ##22 clint1a (ENSHCOG00000002647) LSM11 (ENSHCOG00000002629) thg1l (ENSHCOG00000002622) Percomorphaceae_B ANCESTRAL SPECIES 14 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Percomorphaceae_C ANCESTRAL SPECIES 16 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Eupercaria ANCESTRAL SPECIES 12 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Tetraodontidae ANCESTRAL SPECIES 9 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT01030000235081.a ENSGT00940000157840.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00940000165959 ENSGT00510000047029 Tetraodon MODERN SPECIES ENSTNIG00000000734 ENSTNIG00000004978 ENSTNIG00000004977 cyfip2 (ENSTNIG00000003229) itk (ENSTNIG00000003228) med7 (ENSTNIG00000019596) ENSTNIG00000017055 gria1a (ENSTNIG00000017056) WNT8A (ENSTNIG00000017057) foxi3b (ENSTNIG00000017058) afap1l1a (ENSTNIG00000017059) ablim3 (ENSTNIG00000017060) SH3TC2 (ENSTNIG00000017061) adrb2a (ENSTNIG00000017062) il12ba (ENSTNIG00000001796) EBF1 (ENSTNIG00000017063) ##22 clint1a (ENSTNIG00000017065) LSM11 (ENSTNIG00000017066) thg1l (ENSTNIG00000017067) ADAM19 (ENSTNIG00000017068) GPR151 (ENSTNIG00000017069) PPP2R2B (ENSTNIG00000017070) ##21 rpl26 (ENSTNIG00000017071) atp6v0e1 (ENSTNIG00000017072) BNIP1 (ENSTNIG00000017073) nkx2.5 (ENSTNIG00000017075) STC2 (ENSTNIG00000017076) ##32 ENSTNIG00000017077 pin4 (ENSTNIG00000005615) faf2 (ENSTNIG00000005614) rnf44 (ENSTNIG00000005613) Fugu MODERN SPECIES 5 cyfip2 (ENSTRUG00000003384) itk (ENSTRUG00000004405) ENSTRUG00000005389 ENSTRUG00000005452 gria1a (ENSTRUG00000005608) ENSTRUG00000025786 wnt8 (ENSTRUG00000006709) ENSTRUG00000021681 foxi3b (ENSTRUG00000026942) ENSTRUG00000007147 afap1l1a (ENSTRUG00000007424) ablim3 (ENSTRUG00000008090) SH3TC2 (ENSTRUG00000008708) adrb2a (ENSTRUG00000009069) IL-12 p40 (ENSTRUG00000009097) EBF1 (ENSTRUG00000009320) ##22 clint1a (ENSTRUG00000009500) LSM11 (ENSTRUG00000009729) thg1l (ENSTRUG00000009758) ADAM19 (ENSTRUG00000009860) GPR151 (ENSTRUG00000010343) PPP2R2B (ENSTRUG00000010364) ##21 rpl26l1 (ENSTRUG00000032099) atp6v0e1 (ENSTRUG00000010738) BNIP1 (ENSTRUG00000020057) nkx2.5 (ENSTRUG00000010802) stc2 (ENSTRUG00000032377) ##32 cpeb4a (ENSTRUG00000010947) DRD1 (ENSTRUG00000021188) nek12 (ENSTRUG00000011168) pin4 (ENSTRUG00000011179) Eupecaria_A ANCESTRAL SPECIES 13 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Eupecaria_B ANCESTRAL SPECIES 13 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Eupecaria_C ANCESTRAL SPECIES 12 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Eupercaria_incertae_sedis ANCESTRAL SPECIES 14 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Large yellow croaker MODERN SPECIES cyfip2 (ENSLCRG00005002388) itk (ENSLCRG00005001339) ENSLCRG00005001303 ENSLCRG00005001302 gria1a (ENSLCRG00005001255) ENSLCRG00005001244 WNT8A (ENSLCRG00005001238) ENSLCRG00005001234 foxi3b (ENSLCRG00005001232) ENSLCRG00005001229 afap1l1a (ENSLCRG00005001224) ablim3 (ENSLCRG00005001204) SH3TC2 (ENSLCRG00005001178) adrb2a (ENSLCRG00005001170) il12ba (ENSLCRG00005001169) EBF1 (ENSLCRG00005000365) ##22 clint1a (ENSLCRG00005000238) LSM11 (ENSLCRG00005000218) thg1l (ENSLCRG00005000206) ADAM19 (ENSLCRG00005000157) GPR151 (ENSLCRG00005000120) ENSLCRG00005000089 ##21 rpl26 (ENSLCRG00005000065) atp6v0e1 (ENSLCRG00005000057) BNIP1 (ENSLCRG00005000061) nkx2.5 (ENSLCRG00005021437) STC2 (ENSLCRG00005021436) ##32 cpeb4a (ENSLCRG00005021432) msx2a (ENSLCRG00005021428) DRD1 (ENSLCRG00005021427) nek12 (ENSLCRG00005021425) European seabass MODERN SPECIES 12 med7 (ENSDLAG00005008337) ENSDLAG00005008309 gria1a (ENSDLAG00005007100) ENSDLAG00005007043 ENSDLAG00005007017 ENSDLAG00005006995 ENSDLAG00005034197 ENSDLAG00005027845 foxi3b (ENSDLAG00005006986) ENSDLAG00005006968 afap1l1a (ENSDLAG00005006940) ablim3 (ENSDLAG00005004497) SH3TC2 (ENSDLAG00005004142) adrb2a (ENSDLAG00005028975) il12ba (ENSDLAG00005004098) EBF1 (ENSDLAG00005003583) ##22 clint1a (ENSDLAG00005003411) LSM11 (ENSDLAG00005003399) ENSDLAG00005029288 ENSDLAG00005002241 ENSDLAG00005031126 ENSDLAG00005001619 ##21 ENSDLAG00005033905 nkx2.5 (ENSDLAG00005031252) ENSDLAG00005001491 ##32 cpeb4a (ENSDLAG00005001293) msx2a (ENSDLAG00005001228) ENSDLAG00005030567 ENSDLAG00005028564 ENSDLAG00005020802 ENSDLAG00005020799 Gilthead seabream MODERN SPECIES 9 ENSSAUG00010027352 gria1a (ENSSAUG00010027364) ENSSAUG00010027406 WNT8A (ENSSAUG00010027407) ENSSAUG00010027409 ENSSAUG00010027410 ENSSAUG00010027412 foxi3b (ENSSAUG00010027413) ENSSAUG00010027414 afap1l1a (ENSSAUG00010027415) ablim3 (ENSSAUG00010027425) SH3TC2 (ENSSAUG00010027450) adrb2a (ENSSAUG00010027453) ENSSAUG00010027454 il12ba (ENSSAUG00010027455) EBF1 (ENSSAUG00010027457) ##22 clint1a (ENSSAUG00010027473) LSM11 (ENSSAUG00010027474) thg1l (ENSSAUG00010027475) ENSSAUG00010027476 GPR151 (ENSSAUG00010027479) ENSSAUG00010027485 ##21 rpl26 (ENSSAUG00010027493) atp6v0e1 (ENSSAUG00010027496) BNIP1 (ENSSAUG00010027497) nkx2.5 (ENSSAUG00010027499) STC2 (ENSSAUG00010027500) ##32 cpeb4a (ENSSAUG00010027501) msx2a (ENSSAUG00010027502) DRD1 (ENSSAUG00010027503) nek12 (ENSSAUG00010027504) Perciformes ANCESTRAL SPECIES 13 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Cottioidei ANCESTRAL SPECIES 9 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT01100000264027 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Lumpfish MODERN SPECIES 1 itk (ENSCLMG00005021460) ENSCLMG00005021568 ENSCLMG00005021569 gria1a (ENSCLMG00005021575) ENSCLMG00005021629 WNT8A (ENSCLMG00005021630) ENSCLMG00005021632 ENSCLMG00005021634 foxi3b (ENSCLMG00005021635) ENSCLMG00005021636 afap1l1a (ENSCLMG00005021637) ablim3 (ENSCLMG00005021641) SH3TC2 (ENSCLMG00005021648) adrb2a (ENSCLMG00005021649) il12ba (ENSCLMG00005021650) EBF1 (ENSCLMG00005021682) ##22 clint1a (ENSCLMG00005021705) LSM11 (ENSCLMG00005021706) thg1l (ENSCLMG00005021707) ENSCLMG00005021709 GPR151 (ENSCLMG00005021710) ENSCLMG00005021711 ##21 rpl26 (ENSCLMG00005021712) atp6v0e1 (ENSCLMG00005021713) BNIP1 (ENSCLMG00005021715) nkx2.5 (ENSCLMG00005021716) STC2 (ENSCLMG00005021717) ##32 cpeb4a (ENSCLMG00005021721) MSX2 (ENSCLMG00005021753) DRD1 (ENSCLMG00005021754) nek12 (ENSCLMG00005021755) Stickleback MODERN SPECIES 3 ENSGACG00000018484 ENSGACG00000018483 gria1a (ENSGACG00000018480) WNT8A (ENSGACG00000018477) ENSGACG00000018475 foxi3b (ENSGACG00000018474) ENSGACG00000018471 afap1l1a (ENSGACG00000018467) ENSGACG00000018466 ENSGACG00000018464 ablim3 (ENSGACG00000018461) SH3TC2 (ENSGACG00000018457) ENSGACG00000018456 adrb2a (ENSGACG00000018455) il12ba (ENSGACG00000018453) EBF1 (ENSGACG00000018450) ##22 clint1a (ENSGACG00000018449) LSM11 (ENSGACG00000018447) thg1l (ENSGACG00000018445) ADAM19 (ENSGACG00000018444) ENSGACG00000018443 GPR151 (ENSGACG00000018442) ENSGACG00000018440 ##21 rpl26 (ENSGACG00000018439) atp6v0e1 (ENSGACG00000018438) BNIP1 (ENSGACG00000018435) nkx2.5 (ENSGACG00000018433) STC2 (ENSGACG00000018432) ##32 cpeb4a (ENSGACG00000018422) msx2a (ENSGACG00000018421) DRD1 (ENSGACG00000018420) Perciformes_a ANCESTRAL SPECIES 11 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Channel bull blenny MODERN SPECIES 1 ENSCGOG00000019788 ENSCGOG00000019787 gria1a (ENSCGOG00000016429) ENSCGOG00000016347 ENSCGOG00000016341 WNT8A (ENSCGOG00000016336) foxi3b (ENSCGOG00000016314) ENSCGOG00000016304 foxi3b (ENSCGOG00000016302) ENSCGOG00000016283 afap1l1a (ENSCGOG00000016278) ablim3 (ENSCGOG00000015561) SH3TC2 (ENSCGOG00000015522) adrb2a (ENSCGOG00000015521) il12ba (ENSCGOG00000015518) EBF1 (ENSCGOG00000014632) ##22 clint1a (ENSCGOG00000014613) LSM11 (ENSCGOG00000014611) thg1l (ENSCGOG00000014601) ADAM19 (ENSCGOG00000014207) GPR151 (ENSCGOG00000014195) ENSCGOG00000014103 ##21 rpl26 (ENSCGOG00000014091) atp6v0e1 (ENSCGOG00000014083) nkx2.5 (ENSCGOG00000014081) BNIP1 (ENSCGOG00000014077) STC2 (ENSCGOG00000014075) ##32 cpeb4a (ENSCGOG00000013719) msx2a (ENSCGOG00000013709) DRD1 (ENSCGOG00000013708) nek12 (ENSCGOG00000013526) Pike perch MODERN SPECIES 176 ENSSLUG00000002911 gria1a (ENSSLUG00000002964) ENSSLUG00000003387 WNT8A (ENSSLUG00000003407) WNT8A (ENSSLUG00000003440) ENSSLUG00000003452 foxi3b (ENSSLUG00000003468) ENSSLUG00000003489 afap1l1a (ENSSLUG00000003524) ablim3 (ENSSLUG00000003636) ENSSLUG00000004444 ENSSLUG00000004448 SH3TC2 (ENSSLUG00000004490) adrb2a (ENSSLUG00000004567) il12ba (ENSSLUG00000004572) EBF1 (ENSSLUG00000004604) ##22 clint1a (ENSSLUG00000004683) thg1l (ENSSLUG00000004723) Ballan wrasse DUPLICATION Ballan wrasse MODERN SPECIES 289 EBF1 (ENSLBEG00000022239) ##22 clint1a (ENSLBEG00000022284) LSM11 (ENSLBEG00000022318) thg1l (ENSLBEG00000022336) ADAM19 (ENSLBEG00000022368) GPR151 (ENSLBEG00000022408) ENSLBEG00000022450 ##21 rpl26 (ENSLBEG00000022531) atp6v0e1 (ENSLBEG00000022577) BNIP1 (ENSLBEG00000022716) nkx2.5 (ENSLBEG00000022772) STC2 (ENSLBEG00000022787) ##32 ENSLBEG00000022823 msx2a (ENSLBEG00000022889) DRD1 (ENSLBEG00000022904) ENSLBEG00000022922 Ballan wrasse MODERN SPECIES 27 gria1a (ENSLBEG00000013604) ENSLBEG00000013551 ENSLBEG00000013522 WNT8A (ENSLBEG00000013500) ENSLBEG00000013476 ENSLBEG00000013436 ENSLBEG00000013404 foxi3b (ENSLBEG00000013388) ENSLBEG00000013370 afap1l1a (ENSLBEG00000013290) ablim3 (ENSLBEG00000013118) SH3TC2 (ENSLBEG00000013012) adrb2a (ENSLBEG00000012986) ENSLBEG00000012967 il12ba (ENSLBEG00000012935) ENSLBEG00000012904 ##22 Percomorphaceae_D ANCESTRAL SPECIES 17 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Anabantaria ANCESTRAL SPECIES 15 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Zig-zag eel MODERN SPECIES 1 cyfip2 (ENSMAMG00000012858) itk (ENSMAMG00000012832) ENSMAMG00000012827 ENSMAMG00000012811 gria1a (ENSMAMG00000012778) ENSMAMG00000012767 ENSMAMG00000012707 ENSMAMG00000012699 foxi3b (ENSMAMG00000012681) ENSMAMG00000012661 afap1l1a (ENSMAMG00000012645) ablim3 (ENSMAMG00000012572) SH3TC2 (ENSMAMG00000012479) adrb2a (ENSMAMG00000012468) il12ba (ENSMAMG00000012459) EBF1 (ENSMAMG00000012394) ##22 clint1a (ENSMAMG00000012330) LSM11 (ENSMAMG00000012318) ENSMAMG00000012302 ENSMAMG00000012283 ENSMAMG00000012275 ENSMAMG00000012253 ##21 rpl26 (ENSMAMG00000012244) atp6v0e1 (ENSMAMG00000012234) BNIP1 (ENSMAMG00000012221) NKX2-5 (ENSMAMG00000012211) ENSMAMG00000012202 ##32 cpeb4a (ENSMAMG00000012163) ENSMAMG00000012142 ENSMAMG00000012136 ENSMAMG00000026007 Anabantoidei ANCESTRAL SPECIES 11 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Siamese fighting fish MODERN SPECIES 1 itk (ENSBSLG00000022102) ENSBSLG00000022144 ENSBSLG00000022149 gria1a (ENSBSLG00000022444) ENSBSLG00000023157 WNT8A (ENSBSLG00000023159) ENSBSLG00000023175 ENSBSLG00000023224 foxi3b (ENSBSLG00000023228) ENSBSLG00000023233 afap1l1a (ENSBSLG00000023244) ablim3 (ENSBSLG00000023320) SH3TC2 (ENSBSLG00000024125) adrb2a (ENSBSLG00000024137) il12ba (ENSBSLG00000024142) EBF1 (ENSBSLG00000024182) ##22 clint1a (ENSBSLG00000024298) LSM11 (ENSBSLG00000024301) thg1l (ENSBSLG00000024304) ENSBSLG00000024320 GPR151 (ENSBSLG00000024352) PPP2R2B (ENSBSLG00000024353) ##21 rpl26 (ENSBSLG00000024385) atp6v0e1 (ENSBSLG00000024387) BNIP1 (ENSBSLG00000024390) nkx2.5 (ENSBSLG00000024391) STC2 (ENSBSLG00000024394) ##32 cpeb4a (ENSBSLG00000024396) msx2a (ENSBSLG00000024502) ENSBSLG00000024507 nek12 (ENSBSLG00000024521) Climbing perch MODERN SPECIES 1 ENSATEG00000000784 ENSATEG00000000803 gria1a (ENSATEG00000000871) ENSATEG00000000936 ENSATEG00000000969 ENSATEG00000000946 ENSATEG00000025662 ENSATEG00000001060 foxi3b (ENSATEG00000026556) ENSATEG00000001099 afap1l1a (ENSATEG00000001108) ablim3 (ENSATEG00000001150) SH3TC2 (ENSATEG00000001211) adrb2a (ENSATEG00000001246) il12ba (ENSATEG00000001253) EBF1 (ENSATEG00000001287) ##22 clint1a (ENSATEG00000001365) LSM11 (ENSATEG00000001413) ENSATEG00000001426 ENSATEG00000001474 ENSATEG00000001487 ENSATEG00000001492 ##21 rpl26 (ENSATEG00000001516) atp6v0e1 (ENSATEG00000026190) BNIP1 (ENSATEG00000001656) NKX2-5 (ENSATEG00000001752) ENSATEG00000001757 ##32 cpeb4a (ENSATEG00000001785) ENSATEG00000026251 ENSATEG00000001870 ENSATEG00000001882 Carangaria ANCESTRAL SPECIES 15 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Pleuronectoidei ANCESTRAL SPECIES 18 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00510000047029 Turbot MODERN SPECIES 4 itk (ENSSMAG00000009682) ENSSMAG00000009664 ENSSMAG00000009636 gria1a (ENSSMAG00000009591) ENSSMAG00000009574 ENSSMAG00000009563 ENSSMAG00000009532 ENSSMAG00000009518 foxi3b (ENSSMAG00000009513) ENSSMAG00000009475 afap1l1a (ENSSMAG00000009343) ablim3 (ENSSMAG00000009267) SH3TC2 (ENSSMAG00000009150) adrb2a (ENSSMAG00000009143) il12ba (ENSSMAG00000009129) EBF1 (ENSSMAG00000009083) ##22 clint1a (ENSSMAG00000009019) LSM11 (ENSSMAG00000008998) ENSSMAG00000008988 ENSSMAG00000008967 ENSSMAG00000008960 ENSSMAG00000008920 ##21 rpl26 (ENSSMAG00000008898) atp6v0e1 (ENSSMAG00000023882) BNIP1 (ENSSMAG00000008871) nkx2.5 (ENSSMAG00000034948) ENSSMAG00000008853 ##32 cpeb4a (ENSSMAG00000008812) msx2a (ENSSMAG00000008799) ENSSMAG00000008788 ENSSMAG00000008767 Tongue sole MODERN SPECIES 6 itk (ENSCSEG00000020127) ENSCSEG00000020111 gria1a (ENSCSEG00000020093) ENSCSEG00000020084 WNT8A (ENSCSEG00000020067) ENSCSEG00000020054 ENSCSEG00000020052 foxi3b (ENSCSEG00000020048) ENSCSEG00000020044 afap1l1a (ENSCSEG00000020028) ablim3 (ENSCSEG00000020013) SH3TC2 (ENSCSEG00000020000) adrb2a (ENSCSEG00000019998) ENSCSEG00000019988 il12ba (ENSCSEG00000019971) EBF1 (ENSCSEG00000019968) ##22 clint1a (ENSCSEG00000019955) LSM11 (ENSCSEG00000019951) thg1l (ENSCSEG00000019947) ENSCSEG00000019944 ENSCSEG00000019942 ADAM19 (ENSCSEG00000019932) ENSCSEG00000019928 ##21 rpl26 (ENSCSEG00000019926) atp6v0e1 (ENSCSEG00000019925) BNIP1 (ENSCSEG00000019916) ENSCSEG00000019911 STAG2 (ENSCSEG00000019895) xiap (ENSCSEG00000019890) ENSCSEG00000018878 psmd10 (ENSCSEG00000018758) Carangaria_A ANCESTRAL SPECIES 22 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Barramundi perch MODERN SPECIES 63 hmmr (ENSLCAG00010005689) cyfip2 (ENSLCAG00010005713) itk (ENSLCAG00010005734) ENSLCAG00010005751 gria1a (ENSLCAG00010005799) ENSLCAG00010005991 WNT8A (ENSLCAG00010005995) ENSLCAG00010006004 ENSLCAG00010006007 foxi3b (ENSLCAG00010006012) ENSLCAG00010006021 afap1l1a (ENSLCAG00010006031) ablim3 (ENSLCAG00010006048) SH3TC2 (ENSLCAG00010006084) adrb2a (ENSLCAG00010006103) EBF1 (ENSLCAG00010006361) ##22 il12ba (ENSLCAG00010007108) clint1a (ENSLCAG00010007115) LSM11 (ENSLCAG00010007119) thg1l (ENSLCAG00010007125) ADAM19 (ENSLCAG00010007141) GPR151 (ENSLCAG00010007185) ENSLCAG00010007273 ##21 rpl26 (ENSLCAG00010007402) atp6v0e1 (ENSLCAG00010007410) BNIP1 (ENSLCAG00010007416) nkx2.5 (ENSLCAG00010007425) STC2 (ENSLCAG00010007434) ##32 cpeb4a (ENSLCAG00010007459) msx2a (ENSLCAG00010007508) DRD1 (ENSLCAG00010007511) Seriola ANCESTRAL SPECIES 22 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Greater amberjack MODERN SPECIES 67 itk (ENSSDUG00000010601) ENSSDUG00000010588 ENSSDUG00000010533 gria1a (ENSSDUG00000010457) ENSSDUG00000010445 WNT8A (ENSSDUG00000010424) WNT8A (ENSSDUG00000010385) ENSSDUG00000010376 foxi3b (ENSSDUG00000010362) ENSSDUG00000010352 afap1l1a (ENSSDUG00000010313) ablim3 (ENSSDUG00000010236) SH3TC2 (ENSSDUG00000010200) adrb2a (ENSSDUG00000010174) il12ba (ENSSDUG00000010051) EBF1 (ENSSDUG00000009954) ##22 clint1a (ENSSDUG00000009895) LSM11 (ENSSDUG00000009878) thg1l (ENSSDUG00000009841) ADAM19 (ENSSDUG00000009819) GPR151 (ENSSDUG00000009811) ENSSDUG00000009786 ##21 rpl26 (ENSSDUG00000009759) atp6v0e1 (ENSSDUG00000009742) BNIP1 (ENSSDUG00000009715) nkx2.5 (ENSSDUG00000009686) STC2 (ENSSDUG00000009667) ##32 cpeb4a (ENSSDUG00000009599) msx2a (ENSSDUG00000009581) DRD1 (ENSSDUG00000009570) pin4 (ENSSDUG00000009558) Yellowtail amberjack DUPLICATION Yellowtail amberjack MODERN SPECIES 2988 itk (ENSSLDG00000002242) ENSSLDG00000002310 ENSSLDG00000002325 gria1a (ENSSLDG00000002377) ENSSLDG00000002443 WNT8A (ENSSLDG00000002476) WNT8A (ENSSLDG00000002575) ENSSLDG00000002612 foxi3b (ENSSLDG00000002640) ENSSLDG00000002654 afap1l1a (ENSSLDG00000002678) ablim3 (ENSSLDG00000002750) SH3TC2 (ENSSLDG00000002927) adrb2a (ENSSLDG00000003082) il12ba (ENSSLDG00000003125) EBF1 (ENSSLDG00000003179) ##22 clint1a (ENSSLDG00000003286) LSM11 (ENSSLDG00000003399) thg1l (ENSSLDG00000003416) ENSSLDG00000003450 GPR151 (ENSSLDG00000003464) ENSSLDG00000003475 ##21 rpl26 (ENSSLDG00000003512) atp6v0e1 (ENSSLDG00000003531) BNIP1 (ENSSLDG00000003548) nkx2.5 (ENSSLDG00000003605) STC2 (ENSSLDG00000003626) ##32 cpeb4a (ENSSLDG00000003652) msx2a (ENSSLDG00000003697) DRD1 (ENSSLDG00000003712) nek12 (ENSSLDG00000003738) Yellowtail amberjack MODERN SPECIES 1160 ENSSLDG00000006312 ##22 Ovalentaria ANCESTRAL SPECIES 15 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Atherinomorphae ANCESTRAL SPECIES 9 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00940000165959 ENSGT00510000047029 Oryzias ANCESTRAL SPECIES 17 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 ENSGT00940000157197 Oryzias_b ANCESTRAL SPECIES 20 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00990000205642 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 Indian medaka MODERN SPECIES 16 itk (ENSOMEG00000012431) ENSOMEG00000012405 ENSOMEG00000012395 gria1a (ENSOMEG00000012345) ENSOMEG00000012270 WNT8A (ENSOMEG00000012256) WNT8A (ENSOMEG00000012222) ENSOMEG00000012202 foxi3b (ENSOMEG00000012195) ENSOMEG00000012177 afap1l1a (ENSOMEG00000012122) ablim3 (ENSOMEG00000011979) SH3TC2 (ENSOMEG00000011756) adrb2a (ENSOMEG00000011673) il12ba (ENSOMEG00000011666) EBF1 (ENSOMEG00000011625) ##22 ENSOMEG00000011527 clint1a (ENSOMEG00000011516) LSM11 (ENSOMEG00000011492) thg1l (ENSOMEG00000011477) ENSOMEG00000011448 GPR151 (ENSOMEG00000011385) ENSOMEG00000011370 ##21 rpl26 (ENSOMEG00000011284) atp6v0e1 (ENSOMEG00000011268) BNIP1 (ENSOMEG00000011257) nkx2.5 (ENSOMEG00000011234) STC2 (ENSOMEG00000011223) ##32 cpeb4a (ENSOMEG00000011206) DRD1 (ENSOMEG00000011170) pin4 (ENSOMEG00000011141) Javanese ricefish MODERN SPECIES 1 cyfip2 (ENSOJAG00000022671) itk (ENSOJAG00000022693) med7 (ENSOJAG00000022709) ENSOJAG00000022715 gria1a (ENSOJAG00000005934) ENSOJAG00000006364 WNT8A (ENSOJAG00000006416) ENSOJAG00000006678 foxi3b (ENSOJAG00000006691) ENSOJAG00000006709 afap1l1a (ENSOJAG00000006732) ablim3 (ENSOJAG00000006796) SH3TC2 (ENSOJAG00000006962) adrb2a (ENSOJAG00000007009) il12ba (ENSOJAG00000007054) EBF1 (ENSOJAG00000007315) ##22 ENSOJAG00000008070 clint1a (ENSOJAG00000008106) LSM11 (ENSOJAG00000008134) thg1l (ENSOJAG00000008145) ENSOJAG00000008293 GPR151 (ENSOJAG00000009747) ENSOJAG00000009776 ##21 rpl26 (ENSOJAG00000010114) atp6v0e1 (ENSOJAG00000010132) BNIP1 (ENSOJAG00000010159) nkx2.5 (ENSOJAG00000010200) STC2 (ENSOJAG00000010214) ##32 cpeb4a (ENSOJAG00000010241) DRD1 (ENSOJAG00000010314) pin4 (ENSOJAG00000010324) Oryzias_a ANCESTRAL SPECIES 22 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00940000182228 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 Japanese Medaka HdrR MODERN SPECIES 1 ENSORLG00000007738 ENSORLG00000007735 ENSORLG00000024316 gria1a (ENSORLG00000007719) ENSORLG00000007678 WNT8A (ENSORLG00000007667) WNT8A (ENSORLG00000007648) ENSORLG00000025412 foxi3b (ENSORLG00000028275) ENSORLG00000007644 afap1l1a (ENSORLG00000007636) ablim3 (ENSORLG00000007590) SH3TC2 (ENSORLG00000007524) adrb2a (ENSORLG00000007484) il12ba (ENSORLG00000007477) EBF1 (ENSORLG00000007471) ##22 clint1a (ENSORLG00000007455) LSM11 (ENSORLG00000007434) thg1l (ENSORLG00000007424) ENSORLG00000007413 GPR151 (ENSORLG00000007403) ENSORLG00000007398 ##21 rpl26 (ENSORLG00000007374) atp6v0e1 (ENSORLG00000007362) BNIP1 (ENSORLG00000007358) nkx2.5 (ENSORLG00000007346) ENSORLG00000022613 STC2 (ENSORLG00000023476) ##32 cpeb4a (ENSORLG00000007328) ENSORLG00000007303 pin4 (ENSORLG00000007301) Chinese medaka MODERN SPECIES 25 itk (ENSOSIG00000000378) ENSOSIG00000000362 ENSOSIG00000000358 gria1a (ENSOSIG00000000157) ENSOSIG00000000038 ENSOSIG00000000034 WNT8A (ENSOSIG00000000031) ENSOSIG00000000028 foxi3b (ENSOSIG00000000022) ENSOSIG00000022301 afap1l1a (ENSOSIG00000022298) ablim3 (ENSOSIG00000022277) SH3TC2 (ENSOSIG00000022265) adrb2a (ENSOSIG00000022258) il12ba (ENSOSIG00000022253) EBF1 (ENSOSIG00000022001) ##22 clint1a (ENSOSIG00000021908) LSM11 (ENSOSIG00000021896) thg1l (ENSOSIG00000021893) ADAM19 (ENSOSIG00000021886) ENSOSIG00000021855 GPR151 (ENSOSIG00000021853) ENSOSIG00000021439 ##21 rpl26 (ENSOSIG00000021426) atp6v0e1 (ENSOSIG00000021424) BNIP1 (ENSOSIG00000021421) nkx2.5 (ENSOSIG00000021419) ENSOSIG00000021417 STC2 (ENSOSIG00000021416) ##32 cpeb4a (ENSOSIG00000021387) DRD1 (ENSOSIG00000021374) Cyprinodontiformes ANCESTRAL SPECIES 8 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00940000165959 ENSGT00510000047029 Aplocheiloidei ANCESTRAL SPECIES 98 ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B.f ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00940000165959 ENSGT00510000047029 Mangrove rivulus MODERN SPECIES 188 ENSKMAG00000009857 WNT8A (ENSKMAG00000009796) WNT8A (ENSKMAG00000009767) ENSKMAG00000009743 ENSKMAG00000009718 foxi3b (ENSKMAG00000009703) ENSKMAG00000009662 ENSKMAG00000009626 afap1l1a (ENSKMAG00000009542) ablim3 (ENSKMAG00000009437) SH3TC2 (ENSKMAG00000009379) adrb2a (ENSKMAG00000009371) il12ba (ENSKMAG00000009319) EBF1 (ENSKMAG00000009270) ##22 clint1a (ENSKMAG00000009195) LSM11 (ENSKMAG00000009181) thg1l (ENSKMAG00000009156) ADAM19 (ENSKMAG00000009132) GPR151 (ENSKMAG00000009118) ENSKMAG00000009079 ##21 rpl26 (ENSKMAG00000009061) atp6v0e1 (ENSKMAG00000009053) BNIP1 (ENSKMAG00000009017) nkx2.5 (ENSKMAG00000009000) STC2 (ENSKMAG00000008973) ##32 ENSKMAG00000008902 DRD1 (ENSKMAG00000008861) nek12 (ENSKMAG00000008848) pin4 (ENSKMAG00000008835) Turquoise killifish MODERN SPECIES 28 Nfu_g_1_003593 (ENSNFUG00015021941) ##22 CLINT1A (ENSNFUG00015021908) LSM11 (ENSNFUG00015021905) thg1l (ENSNFUG00015021898) ADAM19B (ENSNFUG00015021621) ENSNFUG00015021588 GPR151 (ENSNFUG00015021582) ENSNFUG00015021579 ##21 Cyprinodontoidei ANCESTRAL SPECIES 19 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 ENSGT00940000157197 Poeciliinae ANCESTRAL SPECIES 11 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 ENSGT00940000157197 Poecilia ANCESTRAL SPECIES 21 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 ENSGT00940000157197 NAME_6 ANCESTRAL SPECIES 17 ENSGT00950000182850.a.b.a.b.a.b.f ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b.f ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 ENSGT00940000157197 Sailfin molly MODERN SPECIES 728 ENSPLAG00000019591 SH3TC2 (ENSPLAG00000019580) adrb2a (ENSPLAG00000019528) ENSPLAG00000019522 il12ba (ENSPLAG00000019510) EBF1 (ENSPLAG00000019486) ##22 clint1a (ENSPLAG00000019440) LSM11 (ENSPLAG00000019434) thg1l (ENSPLAG00000019419) Amazon molly MODERN SPECIES 622 gria1a (ENSPFOG00000000190) ENSPFOG00000023621 ENSPFOG00000000198 ENSPFOG00000022035 SH3TC2 (ENSPFOG00000000208) adrb2a (ENSPFOG00000020975) il12ba (ENSPFOG00000000264) EBF1 (ENSPFOG00000000294) ##22 clint1a (ENSPFOG00000000551) LSM11 (ENSPFOG00000000512) thg1l (ENSPFOG00000000528) thg1l (ENSPFOG00000000643) ENSPFOG00000000776 GPR151 (ENSPFOG00000020976) GPR151 (ENSPFOG00000000955) Guppy MODERN SPECIES 440 cyfip2 (ENSPREG00000020521) itk (ENSPREG00000020456) ENSPREG00000020443 ENSPREG00000020435 gria1a (ENSPREG00000020418) WNT8A (ENSPREG00000020385) ENSPREG00000020370 ENSPREG00000020363 foxi3b (ENSPREG00000020357) ENSPREG00000020347 afap1l1a (ENSPREG00000020266) ablim3 (ENSPREG00000020058) SH3TC2 (ENSPREG00000019866) adrb2a (ENSPREG00000019818) il12ba (ENSPREG00000019792) EBF1 (ENSPREG00000019762) ##22 clint1a (ENSPREG00000019704) LSM11 (ENSPREG00000019696) thg1l (ENSPREG00000019678) ENSPREG00000019651 ENSPREG00000019638 ENSPREG00000019594 ##21 rpl26 (ENSPREG00000019574) atp6v0e1 (ENSPREG00000019563) BNIP1 (ENSPREG00000019539) nkx2.5 (ENSPREG00000019530) STC2 (ENSPREG00000019524) ##32 ENSPREG00000019512 cpeb4a (ENSPREG00000019466) ENSPREG00000019444 pin4 (ENSPREG00000019423) Platyfish MODERN SPECIES 15 gria1a (ENSXMAG00000010477) ENSXMAG00000026788 ENSXMAG00000029503 ENSXMAG00000010476 WNT8A (ENSXMAG00000010466) WNT8A (ENSXMAG00000010465) ENSXMAG00000023574 foxi3b (ENSXMAG00000010462) ENSXMAG00000027368 ENSXMAG00000010450 afap1l1a (ENSXMAG00000010435) ablim3 (ENSXMAG00000010396) SH3TC2 (ENSXMAG00000010375) adrb2a (ENSXMAG00000019510) il12ba (ENSXMAG00000010355) EBF1 (ENSXMAG00000010351) ##22 clint1a (ENSXMAG00000008223) LSM11 (ENSXMAG00000008238) thg1l (ENSXMAG00000008240) ENSXMAG00000010315 ENSXMAG00000029074 ##21 rpl26 (ENSXMAG00000010281) atp6v0e1 (ENSXMAG00000021044) BNIP1 (ENSXMAG00000023412) nkx2.5 (ENSXMAG00000010266) STC2 (ENSXMAG00000010263) ##32 cpeb4a (ENSXMAG00000010247) DRD1 (ENSXMAG00000019506) pin4 (ENSXMAG00000010241) faf2 (ENSXMAG00000010225) rnf44 (ENSXMAG00000025911) NAME_4 ANCESTRAL SPECIES 20 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000155857.f.a ENSGT00510000047029 ENSGT00940000157197 Sheepshead minnow MODERN SPECIES 120 EBF1 (ENSCVAG00000011669) ##22 clint1a (ENSCVAG00000011682) LSM11 (ENSCVAG00000011703) thg1l (ENSCVAG00000011708) ENSCVAG00000013235 GPR151 (ENSCVAG00000013260) ENSCVAG00000013279 ##21 rpl26 (ENSCVAG00000013291) atp6v0e1 (ENSCVAG00000013296) BNIP1 (ENSCVAG00000013320) nkx2.5 (ENSCVAG00000013333) ENSCVAG00000013345 DRD1 (ENSCVAG00000013353) pin4 (ENSCVAG00000013371) faf2 (ENSCVAG00000013408) ENSCVAG00000013418 Mummichog DUPLICATION Mummichog MODERN SPECIES 235 EBF1 (ENSFHEG00000007292) ##22 clint1a (ENSFHEG00000007304) ENSFHEG00000007324 thg1l (ENSFHEG00000007339) ENSFHEG00000007352 GPR151 (ENSFHEG00000007363) ENSFHEG00000007377 ##21 rpl26 (ENSFHEG00000007399) BNIP1 (ENSFHEG00000007429) nkx2.5 (ENSFHEG00000007444) STC2 (ENSFHEG00000007460) ##32 cpeb4a (ENSFHEG00000007532) DRD1 (ENSFHEG00000007554) ENSFHEG00000007608 pin4 (ENSFHEG00000007619) faf2 (ENSFHEG00000007655) Mummichog MODERN SPECIES 454 WNT8A (ENSFHEG00000011077) WNT8A (ENSFHEG00000011066) ENSFHEG00000011046 foxi3b (ENSFHEG00000011033) ENSFHEG00000011019 afap1l1a (ENSFHEG00000010911) ablim3 (ENSFHEG00000010827) SH3TC2 (ENSFHEG00000010719) adrb2a (ENSFHEG00000010689) il12ba (ENSFHEG00000010683) ENSFHEG00000010676 ##22 Ovalentaria_B ANCESTRAL SPECIES 13 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Pomacentridae ANCESTRAL SPECIES 4 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b.a ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Pomacentridae_A ANCESTRAL SPECIES 17 ENSGT00940000154444.B ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b.a ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000159824 ENSGT00940000155857.f.a Amphiprion ANCESTRAL SPECIES 26 ENSGT00940000158850 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.b ENSGT00940000157840.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b.a ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000159824 ENSGT00940000155857.f.a ENSGT00940000165959 Clown anemonefish MODERN SPECIES 3322 itk (ENSAOCG00000014893) ENSAOCG00000001026 ENSAOCG00000014930 gria1a (ENSAOCG00000014969) ENSAOCG00000001848 WNT8A (ENSAOCG00000015098) WNT8A (ENSAOCG00000015126) ENSAOCG00000015137 foxi3b (ENSAOCG00000015146) ENSAOCG00000002171 afap1l1a (ENSAOCG00000015204) ablim3 (ENSAOCG00000015274) SH3TC2 (ENSAOCG00000015347) adrb2a (ENSAOCG00000015368) il12ba (ENSAOCG00000015400) EBF1 (ENSAOCG00000015500) ##22 clint1a (ENSAOCG00000015555) LSM11 (ENSAOCG00000015560) thg1l (ENSAOCG00000015583) ENSAOCG00000015615 GPR151 (ENSAOCG00000015625) ENSAOCG00000015657 ##21 rpl26 (ENSAOCG00000015670) atp6v0e1 (ENSAOCG00000015692) nkx2.5 (ENSAOCG00000001088) BNIP1 (ENSAOCG00000001092) STC2 (ENSAOCG00000015774) ##32 cpeb4a (ENSAOCG00000015830) MSX2 (ENSAOCG00000015848) DRD1 (ENSAOCG00000015856) nek12 (ENSAOCG00000015866) Orange clownfish MODERN SPECIES 4 itk (ENSAPEG00000010858) ENSAPEG00000010943 ENSAPEG00000010961 gria1a (ENSAPEG00000011016) ENSAPEG00000011095 WNT8A (ENSAPEG00000011102) WNT8A (ENSAPEG00000011151) ENSAPEG00000011258 foxi3b (ENSAPEG00000011273) ENSAPEG00000011292 afap1l1a (ENSAPEG00000011329) ablim3 (ENSAPEG00000011381) SH3TC2 (ENSAPEG00000011464) adrb2a (ENSAPEG00000011560) il12ba (ENSAPEG00000011572) EBF1 (ENSAPEG00000011584) ##22 clint1a (ENSAPEG00000011645) LSM11 (ENSAPEG00000011659) thg1l (ENSAPEG00000011671) ENSAPEG00000011683 GPR151 (ENSAPEG00000011707) ENSAPEG00000011721 ##21 rpl26 (ENSAPEG00000011777) atp6v0e1 (ENSAPEG00000011795) BNIP1 (ENSAPEG00000011824) nkx2.5 (ENSAPEG00000011853) STC2 (ENSAPEG00000011880) ##32 cpeb4a (ENSAPEG00000011894) ENSAPEG00000011927 DRD1 (ENSAPEG00000011939) nek12 (ENSAPEG00000011950) Spiny chromis MODERN SPECIES 1348 adrb2a (ENSAPOG00000012648) ENSAPOG00000012641 il12ba (ENSAPOG00000012615) EBF1 (ENSAPOG00000012596) ##22 clint1a (ENSAPOG00000012458) LSM11 (ENSAPOG00000012439) thg1l (ENSAPOG00000012429) Bicolor damselfish MODERN SPECIES 400 ENSSPAG00000009173 WNT8A (ENSSPAG00000009138) WNT8A (ENSSPAG00000009125) ENSSPAG00000009101 ENSSPAG00000009088 foxi3b (ENSSPAG00000009081) ENSSPAG00000009064 afap1l1a (ENSSPAG00000009032) ENSSPAG00000009018 ablim3 (ENSSPAG00000008984) SH3TC2 (ENSSPAG00000008941) adrb2a (ENSSPAG00000008929) il12ba (ENSSPAG00000008911) EBF1 (ENSSPAG00000008807) ##22 clint1a (ENSSPAG00000008774) LSM11 (ENSSPAG00000008768) thg1l (ENSSPAG00000008744) ENSSPAG00000008702 GPR151 (ENSSPAG00000008694) ENSSPAG00000008661 ##21 rpl26 (ENSSPAG00000008645) atp6v0e1 (ENSSPAG00000008628) BNIP1 (ENSSPAG00000008611) nkx2.5 (ENSSPAG00000008586) STC2 (ENSSPAG00000008573) ##32 cpeb4a (ENSSPAG00000008532) msx2a (ENSSPAG00000008502) DRD1 (ENSSPAG00000008498) nek12 (ENSSPAG00000008491) Cichlidae ANCESTRAL SPECIES 8 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Pseudocrenilabrinae ANCESTRAL SPECIES 17 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Pseudocrenilabrinae_A ANCESTRAL SPECIES 20 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT01100000263971.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Haplochromini ANCESTRAL SPECIES 14 ENSGT01100000263971.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000179352 ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Burton s mouthbrooder MODERN SPECIES 284 ENSHBUG00000003488 gria1a (ENSHBUG00000000832) ENSHBUG00000003561 ENSHBUG00000003592 WNT8A (ENSHBUG00000003609) ENSHBUG00000003647 ENSHBUG00000003661 ENSHBUG00000003671 foxi3b (ENSHBUG00000003678) ENSHBUG00000003689 afap1l1a (ENSHBUG00000003720) ablim3 (ENSHBUG00000003776) SH3TC2 (ENSHBUG00000003801) adrb2a (ENSHBUG00000003812) il12ba (ENSHBUG00000003827) EBF1 (ENSHBUG00000003918) ##22 clint1a (ENSHBUG00000003990) LSM11 (ENSHBUG00000004016) thg1l (ENSHBUG00000004025) ENSHBUG00000004038 GPR151 (ENSHBUG00000004045) ENSHBUG00000004086 ##21 rpl26 (ENSHBUG00000004103) atp6v0e1 (ENSHBUG00000004116) BNIP1 (ENSHBUG00000004144) nkx2.5 (ENSHBUG00000004161) STC2 (ENSHBUG00000004169) ##32 cpeb4a (ENSHBUG00000004215) msx2a (ENSHBUG00000004219) DRD1 (ENSHBUG00000004226) nek12 (ENSHBUG00000004233) Haplochromini_A ANCESTRAL SPECIES 13 ENSGT01100000263971.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000179352 ENSGT00940000156835.l.a.a ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 P. nyererei MODERN SPECIES 296 ENSPNYG00000000151 gria1a (ENSPNYG00000000152) ENSPNYG00000000153 ENSPNYG00000000154 WNT8A (ENSPNYG00000000155) WNT8A (ENSPNYG00000000156) ENSPNYG00000000157 ENSPNYG00000000158 foxi3b (ENSPNYG00000000159) ENSPNYG00000000160 afap1l1a (ENSPNYG00000000161) ablim3 (ENSPNYG00000000162) SH3TC2 (ENSPNYG00000000163) adrb2a (ENSPNYG00000000164) il12ba (ENSPNYG00000000165) EBF1 (ENSPNYG00000000166) ##22 clint1a (ENSPNYG00000000167) LSM11 (ENSPNYG00000000168) thg1l (ENSPNYG00000000169) ADAM19 (ENSPNYG00000000170) GPR151 (ENSPNYG00000000171) ENSPNYG00000000172 ##21 rpl26 (ENSPNYG00000000173) atp6v0e1 (ENSPNYG00000000174) BNIP1 (ENSPNYG00000000175) nkx2.5 (ENSPNYG00000000176) STC2 (ENSPNYG00000000177) ##32 cpeb4a (ENSPNYG00000000178) msx2a (ENSPNYG00000000179) DRD1 (ENSPNYG00000000180) nek12 (ENSPNYG00000000181) Haplochromini_B ANCESTRAL SPECIES 7 ENSGT00940000165241 ENSGT00440000033329.a.a.a ENSGT01100000263971.a.a ENSGT00940000157342.c.a ENSGT00940000167593 ENSGT00940000157840.a ENSGT00940000157840.b ENSGT00940000176934 ENSGT00940000164576.b.a.a ENSGT00940000166663 ENSGT00950000183067.a.b.a.d ENSGT00950000182850.a.b.a.b.a.b ENSGT00530000063812.B ENSGT00940000159538.g.a ENSGT00390000012630.A.b ENSGT00950000182859.A.a.b.b.d.c.a ##22 ENSGT00940000155650.a.a ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000159624 ENSGT01030000234518.A.a.b ENSGT00950000182864.a.b.b.a.b.a.b ##21 ENSGT00390000014165 ENSGT00940000156866 ENSGT00390000014412.l ENSGT00940000158996 ENSGT00390000005989.a.b.a.a ##32 ENSGT00940000154998.a.b ENSGT00940000164716.A ENSGT00940000155857.f.a ENSGT00940000165959 Eastern happy MODERN SPECIES 11 ENSACLG00000000718 ENSACLG00000000756 gria1a (ENSACLG00000000782) ENSACLG00000000862 WNT8A (ENSACLG00000000875) ENSACLG00000000927 ENSACLG00000000952 foxi3b (ENSACLG00000000960) ENSACLG00000000973 ENSACLG00000000979 afap1l1a (ENSACLG00000000985) ablim3 (ENSACLG00000001009) SH3TC2 (ENSACLG00000001215) adrb2a (ENSACLG00000001339) il12ba (ENSACLG00000001346) EBF1 (ENSACLG00000001374) ##22 clint1a (ENSACLG00000001440) LSM11 (ENSACLG00000001470) thg1l (ENSACLG00000001490) ENSACLG00000001513 GPR151 (ENSACLG00000001567) ENSACLG00000001580 ##21 rpl26 (ENSACLG00000001623) atp6v0e1 (ENSACLG00000001656) BNIP1 (ENSACLG00000001742) nkx2.5 (ENSACLG00000001803) STC2 (ENSACLG00000001808) ##32 cpeb4a (ENSACLG00000001821) pin4 (ENSACLG00000002103) msx2a (ENSACLG00000002114) DRD1 (ENSACLG00000002123) Zebra mbuna MODERN SPECIES 1102 ENSMZEG00005008104 gria1a (ENSMZEG00005008118) ENSMZEG00005008139 ENSMZEG00005008157 WNT8A (ENSMZEG00005008172) ENSMZEG00005008185 ENSMZEG00005008197 foxi3b (ENSMZEG00005008209) ENSMZEG00005008218 afap1l1a (ENSMZEG00005008238) ablim3 (ENSMZEG00005008291) SH3TC2 (ENSMZEG00005008353) adrb2a (ENSMZEG00005008409) ENSMZEG00005008456 il12ba (ENSMZEG00005008489) EBF1 (ENSMZEG00005008525) ##22 clint1a (ENSMZEG00005008620) LSM11 (ENSMZEG00005008755) thg1l (ENSMZEG00005008770) ENSMZEG00005008796 GPR151 (ENSMZEG00005008821) ENSMZEG00005008829 ##21 rpl26 (ENSMZEG00005008869) atp6v0e1 (ENSMZEG00005008895) BNIP1 (ENSMZEG00005008908) nkx2.5 (ENSMZEG00005008933) STC2 (ENSMZEG00005008946) ##32 cpeb4a (ENSMZEG00005008957) msx2a (ENSMZEG00005009006) DRD1 (ENSMZEG00005009012) nek12 (ENSMZEG00005009027) Lyretail cichlid MODERN SPECIES 292 ENSNBRG00000018680 ENSNBRG00000018645 ENSNBRG00000018627 gria1a (ENSNBRG00000018592) ENSNBRG00000018577 WNT8A (ENSNBRG00000018339) ENSNBRG00000018267 ENSNBRG00000018261 foxi3b (ENSNBRG00000018251) ENSNBRG00000018226 afap1l1a (ENSNBRG00000018184) ablim3 (ENSNBRG00000018020) SH3TC2 (ENSNBRG00000017949) adrb2a (ENSNBRG00000017928) il12ba (ENSNBRG00000017908) EBF1 (ENSNBRG00000017864) ##22 clint1a (ENSNBRG00000017805) LSM11 (ENSNBRG00000017775) thg1l (ENSNBRG00000017747) ADAM19 (ENSNBRG00000016976) GPR151 (ENSNBRG00000016675) ENSNBRG00000016625 ##21 rpl26 (ENSNBRG00000016596) atp6v0e1 (ENSNBRG00000016585) BNIP1 (ENSNBRG00000016563) nkx2.5 (ENSNBRG00000016525) STC2 (ENSNBRG00000016511) ##32 cpeb4a (ENSNBRG00000016474) msx2a (ENSNBRG00000016440) DRD1 (ENSNBRG00000016428) nek12 (ENSNBRG00000016228) Nile tilapia MODERN SPECIES 11 ENSONIG00000020576 ENSONIG00000017600 gria1a (ENSONIG00000017606) ENSONIG00000037471 ENSONIG00000017615 ENSONIG00000027224 ENSONIG00000017617 ENSONIG00000029990 foxi3b (ENSONIG00000017618) ENSONIG00000029286 afap1l1a (ENSONIG00000017624) ablim3 (ENSONIG00000017632) SH3TC2 (ENSONIG00000017645) adrb2a (ENSONIG00000020577) il12ba (ENSONIG00000017652) EBF1 (ENSONIG00000017655) ##22 clint1a (ENSONIG00000017658) LSM11 (ENSONIG00000017657) thg1l (ENSONIG00000017663) ENSONIG00000017665 GPR151 (ENSONIG00000029838) ENSONIG00000017671 ##21 rpl26 (ENSONIG00000017676) atp6v0e1 (ENSONIG00000028024) BNIP1 (ENSONIG00000017678) nkx2.5 (ENSONIG00000017679) stc2 (ENSONIG00000029953) ##32 cpeb4a (ENSONIG00000017682) msx2a (ENSONIG00000017685) nek12 (ENSONIG00000017689) faf2 (ENSONIG00000017695) Midas cichlid MODERN SPECIES 189 itk (ENSACIG00000015444) med7 (ENSACIG00000015483) ENSACIG00000015494 gria1a (ENSACIG00000015526) ENSACIG00000015570 WNT8A (ENSACIG00000015581) ENSACIG00000015599 ENSACIG00000015615 foxi3b (ENSACIG00000015632) ENSACIG00000015669 afap1l1a (ENSACIG00000015699) ablim3 (ENSACIG00000015752) SH3TC2 (ENSACIG00000015791) adrb2a (ENSACIG00000015862) il12ba (ENSACIG00000015872) EBF1 (ENSACIG00000015886) ##22 clint1a (ENSACIG00000015914) LSM11 (ENSACIG00000015937) thg1l (ENSACIG00000015946) ADAM19 (ENSACIG00000016009) GPR151 (ENSACIG00000016712) ENSACIG00000016718 ##21 rpl26 (ENSACIG00000016752) atp6v0e1 (ENSACIG00000016760) BNIP1 (ENSACIG00000016771) nkx2.5 (ENSACIG00000016790) STC2 (ENSACIG00000016800) ##32 cpeb4a (ENSACIG00000016815) ENSACIG00000016833 DRD1 (ENSACIG00000016838) ENSACIG00000016844 Euteleosteomorpha ANCESTRAL SPECIES 422 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 Acanthomorphata ANCESTRAL SPECIES 10 ENSGT00940000156996.f.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00390000009902 ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a Euacanthomorphacea ANCESTRAL SPECIES 20 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00390000009902 ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Pinecone sodierfish MODERN SPECIES 5 ENSMMDG00005014515 FAM89B (ENSMMDG00005014550) znrd2 (ENSMMDG00005014553) ENSMMDG00005014557 arr3a (ENSMMDG00005014566) MCF2 (ENSMMDG00005014684) f9b (ENSMMDG00005014696) fgf13b (ENSMMDG00005014772) afap1l1b (ENSMMDG00005014778) ablim3 (ENSMMDG00005014796) ENSMMDG00005014873 ubtd2 (ENSMMDG00005014952) ENSMMDG00005014953 ublcp1 (ENSMMDG00005014958) RNF145 (ENSMMDG00005014960) EBF1 (ENSMMDG00005015002) ##22 CLINT1 (ENSMMDG00005015146) ENSMMDG00005015150 TCERG1 (ENSMMDG00005015160) PCYOX1L (ENSMMDG00005016352) CREBRF (ENSMMDG00005016358) BNIP1 (ENSMMDG00005016363) STC2 (ENSMMDG00005016367) ##32 bod1 (ENSMMDG00005016372) htatsf1 (ENSMMDG00005016373) tmtops3b (ENSMMDG00005016399) tpst1l (ENSMMDG00005016405) crcp (ENSMMDG00005016406) ENSMMDG00005016407 asl (ENSMMDG00005016462) ca4c (ENSMMDG00005018526) Percomorphaceae ANCESTRAL SPECIES 9 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00390000009902 ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Percomorphaceae_B ANCESTRAL SPECIES 10 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Ovalentaria ANCESTRAL SPECIES 11 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Atherinomorphae ANCESTRAL SPECIES 14 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Cyprinodontiformes ANCESTRAL SPECIES 11 ENSGT00390000004124.i.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Aplocheiloidei ANCESTRAL SPECIES 35 ENSGT00940000156996.f.b ENSGT00390000004124.i.b ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a ENSGT00920000149180.a Mangrove rivulus MODERN SPECIES 58 ENSKMAG00000008349 ENSKMAG00000008225 znrd2 (ENSKMAG00000008182) arr3a (ENSKMAG00000008151) MCF2 (ENSKMAG00000008123) f9b (ENSKMAG00000008098) fgf13b (ENSKMAG00000008064) afap1l1b (ENSKMAG00000008026) ablim3 (ENSKMAG00000007970) ENSKMAG00000007935 ADRB2 (ENSKMAG00000007924) ubtd2 (ENSKMAG00000007896) IL12B (ENSKMAG00000007875) ublcp1 (ENSKMAG00000007828) RNF145 (ENSKMAG00000007773) EBF1 (ENSKMAG00000007667) ##22 htatsf1 (ENSKMAG00000007622) bod1 (ENSKMAG00000007608) STC2 (ENSKMAG00000007593) ##32 BNIP1 (ENSKMAG00000007566) CREBRF (ENSKMAG00000007522) PCYOX1L (ENSKMAG00000007492) TCERG1 (ENSKMAG00000007448) ENSKMAG00000007423 ENSKMAG00000007406 tmtops3b (ENSKMAG00000007352) tpst1l (ENSKMAG00000007322) crcp (ENSKMAG00000007300) asl (ENSKMAG00000007224) ca4c (ENSKMAG00000007194) ENSKMAG00000007180 Turquoise killifish MODERN SPECIES 1620 SSSCA1 (ENSNFUG00015008104) ARR3A (ENSNFUG00015008125) MCF2B (ENSNFUG00015008350) ENSNFUG00015008634 f9b (ENSNFUG00015008636) OLA.13760 (ENSNFUG00015008638) AFAP1L1B (ENSNFUG00015008640) ablim3 (ENSNFUG00015008641) ADRB2B (ENSNFUG00015008648) UBTD2 (ENSNFUG00015008654) IL12BB (ENSNFUG00015008661) UBLCP1 (ENSNFUG00015008670) RNF145 (ENSNFUG00015008678) ENSNFUG00015008691 ENSNFUG00015008696 EBF1 (ENSNFUG00015008709) ##22 HTATSF1 (ENSNFUG00015008749) BOD1 (ENSNFUG00015008836) CABZ01034707.1 (ENSNFUG00015008839) ##32 BNIP1 (ENSNFUG00015008846) CREBRF (ENSNFUG00015008855) PCYOX1L (ENSNFUG00015008860) TCERG1 (ENSNFUG00015008923) TPST1L (ENSNFUG00015009341) ENSNFUG00015009369 crcp (ENSNFUG00015009376) ENSNFUG00015009391 ZCCHC10 (ENSNFUG00015009397) AFF4 (ENSNFUG00015009414) SHROOM1 (ENSNFUG00015009428) ENSNFUG00015009435 Cyprinodontoidei ANCESTRAL SPECIES 5 ENSGT00390000004124.i.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Poeciliinae ANCESTRAL SPECIES 17 ENSGT00940000156996.f.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a Poecilia ANCESTRAL SPECIES 7 ENSGT00940000156996.f.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a NAME_6 ANCESTRAL SPECIES 1 ENSGT00940000156996.f.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a Sailfin molly MODERN SPECIES 756 ENSPLAG00000007699 ubtd2 (ENSPLAG00000007678) IL12B (ENSPLAG00000007657) ublcp1 (ENSPLAG00000007624) RNF145 (ENSPLAG00000007598) EBF1 (ENSPLAG00000007567) ##22 htatsf1 (ENSPLAG00000007532) ENSPLAG00000007517 BNIP1 (ENSPLAG00000007496) CREBRF (ENSPLAG00000007488) PCYOX1L (ENSPLAG00000007478) ENSPLAG00000007469 Amazon molly MODERN SPECIES 255 ENSPFOG00000005048 EHBP1L1 (ENSPFOG00000005065) FAM89B (ENSPFOG00000005167) znrd2 (ENSPFOG00000005175) arr3a (ENSPFOG00000005241) MCF2 (ENSPFOG00000005613) f9b (ENSPFOG00000006072) fgf13b (ENSPFOG00000006203) afap1l1b (ENSPFOG00000006277) ABLIM3 (ENSPFOG00000006596) ADRB2 (ENSPFOG00000007036) ubtd2 (ENSPFOG00000007096) IL12B (ENSPFOG00000007116) ublcp1 (ENSPFOG00000007186) RNF145 (ENSPFOG00000007292) EBF1 (ENSPFOG00000007531) ##22 htatsf1 (ENSPFOG00000007871) bod1 (ENSPFOG00000008031) STC2 (ENSPFOG00000023652) ##32 STC2 (ENSPFOG00000008043) ##32 BNIP1 (ENSPFOG00000008074) CREBRF (ENSPFOG00000008174) PCYOX1L (ENSPFOG00000008275) TCERG1 (ENSPFOG00000008374) tmtops3b (ENSPFOG00000008567) tpst1l (ENSPFOG00000008572) crcp (ENSPFOG00000008626) ENSPFOG00000008650 asl (ENSPFOG00000008662) ca4c (ENSPFOG00000008961) aldh3a2b (ENSPFOG00000008973) Guppy MODERN SPECIES 444 ENSPREG00000007181 rbm14a (ENSPREG00000007274) dpp3 (ENSPREG00000007298) ENSPREG00000007366 ENSPREG00000007374 znrd2 (ENSPREG00000007391) f9b (ENSPREG00000007455) fgf13b (ENSPREG00000007543) ENSPREG00000007561 ABLIM3 (ENSPREG00000007581) ENSPREG00000007607 ubtd2 (ENSPREG00000007621) IL12B (ENSPREG00000007646) ublcp1 (ENSPREG00000007679) RNF145 (ENSPREG00000007712) EBF1 (ENSPREG00000007760) ##22 htatsf1 (ENSPREG00000007811) bod1 (ENSPREG00000007838) BNIP1 (ENSPREG00000007862) CREBRF (ENSPREG00000007884) PCYOX1L (ENSPREG00000007899) TCERG1 (ENSPREG00000007921) ENSPREG00000008013 tmtops3b (ENSPREG00000008102) tpst1l (ENSPREG00000008413) ENSPREG00000008478 crcp (ENSPREG00000008487) ca4c (ENSPREG00000008517) aldh3a2b (ENSPREG00000008582) vtnb (ENSPREG00000008618) ENSPREG00000008629 Platyfish MODERN SPECIES 2 ENSXMAG00000027013 ENSXMAG00000028134 FAM89B (ENSXMAG00000000383) znrd2 (ENSXMAG00000000384) arr3a (ENSXMAG00000000387) MCF2 (ENSXMAG00000000404) f9b (ENSXMAG00000000424) fgf13b (ENSXMAG00000000441) afap1l1b (ENSXMAG00000000445) ablim3 (ENSXMAG00000000456) ADRB2 (ENSXMAG00000000470) ubtd2 (ENSXMAG00000026332) IL12B (ENSXMAG00000000474) ublcp1 (ENSXMAG00000025933) RNF145 (ENSXMAG00000000480) EBF1 (ENSXMAG00000000489) ##22 htatsf1 (ENSXMAG00000000490) bod1 (ENSXMAG00000022469) STC2 (ENSXMAG00000000495) ##32 BNIP1 (ENSXMAG00000000497) CREBRF (ENSXMAG00000000504) PCYOX1L (ENSXMAG00000027639) TCERG1 (ENSXMAG00000000519) ENSXMAG00000000532 ENSXMAG00000027186 tmtops3b (ENSXMAG00000007891) tpst1l (ENSXMAG00000007886) crcp (ENSXMAG00000022222) ENSXMAG00000007882 asl (ENSXMAG00000024917) ca4c (ENSXMAG00000007859) NAME_4 ANCESTRAL SPECIES 12 ENSGT00390000004124.i.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Mummichog MODERN SPECIES 790 IL12B (ENSFHEG00000012121) ublcp1 (ENSFHEG00000012155) RNF145 (ENSFHEG00000012203) EBF1 (ENSFHEG00000012263) ##22 Sheepshead minnow MODERN SPECIES 206 ENSCVAG00000000370 ENSCVAG00000014598 FAM89B (ENSCVAG00000014584) znrd2 (ENSCVAG00000014581) arr3a (ENSCVAG00000014576) MCF2 (ENSCVAG00000014560) f9b (ENSCVAG00000014495) fgf13b (ENSCVAG00000014484) afap1l1b (ENSCVAG00000014453) ablim3 (ENSCVAG00000014437) ADRB2 (ENSCVAG00000014254) ubtd2 (ENSCVAG00000014249) IL12B (ENSCVAG00000014229) ublcp1 (ENSCVAG00000014220) RNF145 (ENSCVAG00000014162) EBF1 (ENSCVAG00000014113) ##22 htatsf1 (ENSCVAG00000014070) bod1 (ENSCVAG00000014044) STC2 (ENSCVAG00000013998) ##32 BNIP1 (ENSCVAG00000013923) CREBRF (ENSCVAG00000013884) PCYOX1L (ENSCVAG00000013866) TCERG1 (ENSCVAG00000013825) ENSCVAG00000013673 tpst1l (ENSCVAG00000013647) crcp (ENSCVAG00000013625) ENSCVAG00000013607 asl (ENSCVAG00000013595) ca4c (ENSCVAG00000013509) aldh3a2b (ENSCVAG00000013400) ENSCVAG00000013330 Oryzias ANCESTRAL SPECIES 14 ENSGT00390000004124.i ENSGT00940000179094 ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a ENSGT00530000063751.b.i Oryzias_a ANCESTRAL SPECIES 2 ENSGT00940000156996.f.b ENSGT00390000004124.i ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a ENSGT00530000063751.b.i Chinese medaka MODERN SPECIES 423 ubtd2 (ENSOSIG00000008721) IL12B (ENSOSIG00000008720) ublcp1 (ENSOSIG00000008719) RNF145 (ENSOSIG00000008718) EBF1 (ENSOSIG00000007782) ##22 htatsf1 (ENSOSIG00000007772) bod1 (ENSOSIG00000007771) BNIP1 (ENSOSIG00000007770) CREBRF (ENSOSIG00000007769) PCYOX1L (ENSOSIG00000007768) TCERG1 (ENSOSIG00000007745) CLINT1 (ENSOSIG00000007730) tmtops3b (ENSOSIG00000007728) tpst1l (ENSOSIG00000007726) crcp (ENSOSIG00000007723) ENSOSIG00000007720 asl (ENSOSIG00000007709) ca4c (ENSOSIG00000007707) aldh3a2b (ENSOSIG00000006792) vtnb (ENSOSIG00000006788) Japanese Medaka HdrR MODERN SPECIES 5 ENSORLG00000030006 ENSORLG00000028902 znrd2 (ENSORLG00000023825) arr3a (ENSORLG00000001983) MCF2 (ENSORLG00000002026) ENSORLG00000024912 f9b (ENSORLG00000024715) fgf13b (ENSORLG00000002061) afap1l1b (ENSORLG00000002101) ENSORLG00000002194 ENSORLG00000002214 ubtd2 (ENSORLG00000025523) IL12B (ENSORLG00000002238) ublcp1 (ENSORLG00000002261) RNF145 (ENSORLG00000002282) EBF1 (ENSORLG00000002342) ##22 htatsf1 (ENSORLG00000002356) bod1 (ENSORLG00000025671) BNIP1 (ENSORLG00000002369) CREBRF (ENSORLG00000002384) PCYOX1L (ENSORLG00000002404) TCERG1 (ENSORLG00000002439) CLINT1 (ENSORLG00000002460) tmtops3b (ENSORLG00000023227) tpst1l (ENSORLG00000002471) crcp (ENSORLG00000028784) ENSORLG00000002486 asl (ENSORLG00000002500) ca4c (ENSORLG00000002507) aldh3a2b (ENSORLG00000002528) vtnb (ENSORLG00000002546) Oryzias_b ANCESTRAL SPECIES 13 ENSGT00390000004124.i ENSGT00940000179094 ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a ENSGT00530000063751.b.i Indian medaka MODERN SPECIES 4 ENSOMEG00000006664 ENSOMEG00000006734 znrd2 (ENSOMEG00000006765) arr3a (ENSOMEG00000006803) MCF2 (ENSOMEG00000006840) tert (ENSOMEG00000006967) f9b (ENSOMEG00000007003) fgf13b (ENSOMEG00000007025) afap1l1b (ENSOMEG00000007075) ablim3 (ENSOMEG00000007193) ADRB2 (ENSOMEG00000007249) ubtd2 (ENSOMEG00000007255) IL12B (ENSOMEG00000007298) ublcp1 (ENSOMEG00000007357) RNF145 (ENSOMEG00000007416) EBF1 (ENSOMEG00000007507) ##22 htatsf1 (ENSOMEG00000007564) bod1 (ENSOMEG00000007588) BNIP1 (ENSOMEG00000007608) CREBRF (ENSOMEG00000000190) PCYOX1L (ENSOMEG00000007716) TCERG1 (ENSOMEG00000007795) CLINT1 (ENSOMEG00000007904) tmtops3b (ENSOMEG00000007938) tpst1l (ENSOMEG00000007967) crcp (ENSOMEG00000008006) asl (ENSOMEG00000008092) ca4c (ENSOMEG00000008122) aldh3a2b (ENSOMEG00000008149) vtnb (ENSOMEG00000008174) slc13a2 (ENSOMEG00000008214) Javanese ricefish MODERN SPECIES 5 ENSOJAG00000009568 ENSOJAG00000009559 znrd2 (ENSOJAG00000009555) arr3a (ENSOJAG00000009086) MCF2 (ENSOJAG00000008879) ENSOJAG00000008845 ##17 f9b (ENSOJAG00000008834) fgf13b (ENSOJAG00000008788) afap1l1b (ENSOJAG00000008773) ablim3 (ENSOJAG00000008739) ADRB2 (ENSOJAG00000008607) ubtd2 (ENSOJAG00000008586) ENSOJAG00000008524 ublcp1 (ENSOJAG00000008495) RNF145 (ENSOJAG00000008356) EBF1 (ENSOJAG00000006781) ##22 htatsf1 (ENSOJAG00000006497) bod1 (ENSOJAG00000006467) ENSOJAG00000006455 BNIP1 (ENSOJAG00000006433) CREBRF (ENSOJAG00000006413) PCYOX1L (ENSOJAG00000006386) TCERG1 (ENSOJAG00000006210) CLINT1 (ENSOJAG00000006155) tmtops3b (ENSOJAG00000006034) tpst1l (ENSOJAG00000006013) crcp (ENSOJAG00000005969) ENSOJAG00000005958 asl (ENSOJAG00000005648) ca4c (ENSOJAG00000005180) aldh3a2b (ENSOJAG00000004769) Ovalentaria_B ANCESTRAL SPECIES 16 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Cichlidae ANCESTRAL SPECIES 4 ENSGT00390000004124.i ENSGT00940000179094 ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Pseudocrenilabrinae ANCESTRAL SPECIES 14 ENSGT00390000004124.i ENSGT00940000179094 ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00940000161131.a.b.a.a ENSGT00390000005182.k ENSGT00950000183122.B Pseudocrenilabrinae_A ANCESTRAL SPECIES 22 ENSGT00390000004124.i ENSGT00940000179094 ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00940000161131.a.b.a.a ENSGT00390000005182.k ENSGT00950000183122.B Haplochromini ANCESTRAL SPECIES 8 ENSGT00390000004124.i ENSGT00940000179094 ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00940000161131.a.b.a.a ENSGT00390000005182.k.n.a ENSGT00950000183122.B Burton s mouthbrooder MODERN SPECIES 347 ENSHBUG00000003750 ENSHBUG00000003762 ENSHBUG00000003820 znrd2 (ENSHBUG00000003845) arr3a (ENSHBUG00000003900) MCF2 (ENSHBUG00000003923) f9b (ENSHBUG00000003960) fgf13b (ENSHBUG00000003999) afap1l1b (ENSHBUG00000004020) ablim3 (ENSHBUG00000004111) ADRB2 (ENSHBUG00000004125) ubtd2 (ENSHBUG00000004137) IL12B (ENSHBUG00000004166) ublcp1 (ENSHBUG00000000106) RNF145 (ENSHBUG00000004241) EBF1 (ENSHBUG00000004347) ##22 htatsf1 (ENSHBUG00000004392) ENSHBUG00000004421 BNIP1 (ENSHBUG00000004466) CREBRF (ENSHBUG00000004512) PCYOX1L (ENSHBUG00000004569) TCERG1 (ENSHBUG00000004587) ENSHBUG00000004619 ENSHBUG00000004665 tmtops3b (ENSHBUG00000004742) tpst1l (ENSHBUG00000004760) crcp (ENSHBUG00000004779) ENSHBUG00000004788 ENSHBUG00000004797 asl (ENSHBUG00000004814) ca4c (ENSHBUG00000004833) Haplochromini_A ANCESTRAL SPECIES 6 ENSGT00390000004124.i ENSGT00940000179094 ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00940000161131.a.b.a.a ENSGT00390000005182.k.n.a ENSGT00950000183122.B Haplochromini_B ANCESTRAL SPECIES 16 ENSGT00940000156996.f.b ENSGT00390000004124.i ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k.n.a ENSGT00950000183122.B ENSGT00940000155690.a Eastern happy MODERN SPECIES 1 ENSACLG00000008688 znrd2 (ENSACLG00000008671) arr3a (ENSACLG00000008617) MCF2 (ENSACLG00000008594) f9b (ENSACLG00000008559) fgf13b (ENSACLG00000008552) afap1l1b (ENSACLG00000008529) ablim3 (ENSACLG00000008513) ADRB2 (ENSACLG00000008511) ubtd2 (ENSACLG00000008197) IL12B (ENSACLG00000008190) ublcp1 (ENSACLG00000008166) RNF145 (ENSACLG00000008134) ENSACLG00000008130 ENSACLG00000008129 EBF1 (ENSACLG00000008113) ##22 htatsf1 (ENSACLG00000008096) ENSACLG00000008086 BNIP1 (ENSACLG00000007807) CREBRF (ENSACLG00000007766) PCYOX1L (ENSACLG00000007754) TCERG1 (ENSACLG00000007702) ENSACLG00000007689 ENSACLG00000007659 tmtops3b (ENSACLG00000007618) tpst1l (ENSACLG00000007612) crcp (ENSACLG00000007588) ENSACLG00000007582 ENSACLG00000007579 ENSACLG00000007575 ENSACLG00000007567 Zebra mbuna MODERN SPECIES 1092 ENSMZEG00005001114 ENSMZEG00005000973 znrd2 (ENSMZEG00005000923) arr3a (ENSMZEG00005000912) MCF2 (ENSMZEG00005000848) f9b (ENSMZEG00005000838) fgf13b (ENSMZEG00005000828) afap1l1b (ENSMZEG00005000815) ENSMZEG00005000796 ABLIM3 (ENSMZEG00005000761) ADRB2 (ENSMZEG00005000756) ubtd2 (ENSMZEG00005000741) IL12B (ENSMZEG00005000714) ublcp1 (ENSMZEG00005000662) RNF145 (ENSMZEG00005000588) EBF1 (ENSMZEG00005000538) ##22 htatsf1 (ENSMZEG00005000485) bod1 (ENSMZEG00005000477) STC2 (ENSMZEG00005000115) ##32 BNIP1 (ENSMZEG00005025287) CREBRF (ENSMZEG00005025280) PCYOX1L (ENSMZEG00005025274) TCERG1 (ENSMZEG00005025267) ENSMZEG00005025265 ENSMZEG00005025262 tmtops3b (ENSMZEG00005025258) tpst1l (ENSMZEG00005025257) crcp (ENSMZEG00005025255) ENSMZEG00005025254 asl (ENSMZEG00005025249) ca4c (ENSMZEG00005025244) P. nyererei MODERN SPECIES 321 ENSPNYG00000016023 ENSPNYG00000016038 ENSPNYG00000016088 znrd2 (ENSPNYG00000016233) arr3a (ENSPNYG00000016254) MCF2 (ENSPNYG00000016299) f9b (ENSPNYG00000016364) fgf13b (ENSPNYG00000016380) afap1l1b (ENSPNYG00000016417) ENSPNYG00000016458 ABLIM3 (ENSPNYG00000016482) ADRB2 (ENSPNYG00000016532) ubtd2 (ENSPNYG00000016542) IL12B (ENSPNYG00000016585) ublcp1 (ENSPNYG00000016605) EBF1 (ENSPNYG00000016643) ##22 htatsf1 (ENSPNYG00000016693) ENSPNYG00000016725 BNIP1 (ENSPNYG00000016750) CREBRF (ENSPNYG00000016767) PCYOX1L (ENSPNYG00000016803) TCERG1 (ENSPNYG00000016818) ENSPNYG00000016846 ENSPNYG00000016867 tmtops3b (ENSPNYG00000016902) tpst1l (ENSPNYG00000016957) crcp (ENSPNYG00000016988) ENSPNYG00000017143 ENSPNYG00000017171 ENSPNYG00000017189 asl (ENSPNYG00000017208) Lyretail cichlid MODERN SPECIES 297 ENSNBRG00000004809 ENSNBRG00000004786 ENSNBRG00000004721 znrd2 (ENSNBRG00000004693) arr3a (ENSNBRG00000004388) MCF2 (ENSNBRG00000004320) f9b (ENSNBRG00000004304) fgf13b (ENSNBRG00000004284) afap1l1b (ENSNBRG00000004182) ablim3 (ENSNBRG00000004085) ADRB2 (ENSNBRG00000004061) ubtd2 (ENSNBRG00000004032) IL12B (ENSNBRG00000004011) ublcp1 (ENSNBRG00000003982) RNF145 (ENSNBRG00000003907) EBF1 (ENSNBRG00000003853) ##22 htatsf1 (ENSNBRG00000003818) ENSNBRG00000003779 BNIP1 (ENSNBRG00000003746) CREBRF (ENSNBRG00000003698) PCYOX1L (ENSNBRG00000003661) TCERG1 (ENSNBRG00000003409) ENSNBRG00000003369 ENSNBRG00000003331 tmtops3b (ENSNBRG00000003163) tpst1l (ENSNBRG00000003122) crcp (ENSNBRG00000003094) asl (ENSNBRG00000003042) ENSNBRG00000003026 ca4c (ENSNBRG00000002978) aldh3a2b (ENSNBRG00000002960) Nile tilapia MODERN SPECIES 1 ENSONIG00000028970 ENSONIG00000032804 znrd2 (ENSONIG00000028216) ENSONIG00000031227 arr3a (ENSONIG00000008570) MCF2 (ENSONIG00000008583) f9b (ENSONIG00000008591) fgf13b (ENSONIG00000028040) afap1l1b (ENSONIG00000008601) ablim3 (ENSONIG00000008605) ADRB2 (ENSONIG00000036346) ubtd2 (ENSONIG00000008615) IL12B (ENSONIG00000008618) ublcp1 (ENSONIG00000008623) RNF145 (ENSONIG00000008627) EBF1 (ENSONIG00000008631) ##22 htatsf1 (ENSONIG00000008638) bod1 (ENSONIG00000042231) STC2 (ENSONIG00000008645) ##32 BNIP1 (ENSONIG00000008646) CREBRF (ENSONIG00000008647) PCYOX1L (ENSONIG00000008650) TCERG1 (ENSONIG00000008655) ENSONIG00000008664 ENSONIG00000008668 tmtops3b (ENSONIG00000008673) tpst1l (ENSONIG00000008675) ENSONIG00000039957 ENSONIG00000008680 ENSONIG00000037290 crcp (ENSONIG00000042686) Midas cichlid MODERN SPECIES 60 ENSACIG00000021111 ENSACIG00000021037 ENSACIG00000020997 znrd2 (ENSACIG00000020951) arr3a (ENSACIG00000020924) MCF2 (ENSACIG00000020888) f9b (ENSACIG00000020872) fgf13b (ENSACIG00000020858) afap1l1b (ENSACIG00000020759) ablim3 (ENSACIG00000020709) ADRB2 (ENSACIG00000020563) ubtd2 (ENSACIG00000020544) IL12B (ENSACIG00000020532) ublcp1 (ENSACIG00000020518) RNF145 (ENSACIG00000020500) EBF1 (ENSACIG00000020484) ##22 htatsf1 (ENSACIG00000020459) ENSACIG00000020454 ENSACIG00000020412 BNIP1 (ENSACIG00000020392) CREBRF (ENSACIG00000020364) PCYOX1L (ENSACIG00000020354) TCERG1 (ENSACIG00000020318) ENSACIG00000020307 CLINT1 (ENSACIG00000020282) tmtops3b (ENSACIG00000020275) tpst1l (ENSACIG00000020259) crcp (ENSACIG00000020248) Pomacentridae ANCESTRAL SPECIES 10 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00390000009902 ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Pomacentridae_A ANCESTRAL SPECIES 3 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00390000009902 ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Amphiprion ANCESTRAL SPECIES 3 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00940000181697 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000181131 ENSGT00940000155650.a.b ENSGT00940000161042 ENSGT00940000157770 ENSGT00390000011206.b ENSGT01090000259997.a.d.b.b.b.b.b.c ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00390000009902 ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k Clown anemonefish MODERN SPECIES 739 ENSAOCG00000001958 FAM89B (ENSAOCG00000022438) znrd2 (ENSAOCG00000022428) arr3a (ENSAOCG00000022413) MCF2 (ENSAOCG00000022360) f9b (ENSAOCG00000022262) fgf13b (ENSAOCG00000022246) afap1l1b (ENSAOCG00000022210) ablim3 (ENSAOCG00000022137) ADRB2 (ENSAOCG00000021933) ubtd2 (ENSAOCG00000021918) IL12B (ENSAOCG00000021887) ublcp1 (ENSAOCG00000021854) RNF145 (ENSAOCG00000021805) ENSAOCG00000021742 EBF1 (ENSAOCG00000021715) ##22 ENSAOCG00000021673 Orange clownfish MODERN SPECIES 6 ints2 (ENSAPEG00000015071) AUTS2 (ENSAPEG00000015219) cxadr (ENSAPEG00000015699) btg3 (ENSAPEG00000015710) ENSAPEG00000015722 fgf13b (ENSAPEG00000015730) ENSAPEG00000015745 afap1l1b (ENSAPEG00000015760) ablim3 (ENSAPEG00000015796) ADRB2 (ENSAPEG00000015923) ubtd2 (ENSAPEG00000015929) IL12B (ENSAPEG00000015946) ublcp1 (ENSAPEG00000015991) RNF145 (ENSAPEG00000016047) ENSAPEG00000016088 EBF1 (ENSAPEG00000016110) ##22 ENSAPEG00000016158 CLINT1 (ENSAPEG00000016192) TCERG1 (ENSAPEG00000016260) PCYOX1L (ENSAPEG00000016324) ENSAPEG00000016336 CREBRF (ENSAPEG00000016349) BNIP1 (ENSAPEG00000016372) STC2 (ENSAPEG00000016395) ##32 htatsf1 (ENSAPEG00000016432) tmtops3b (ENSAPEG00000016478) tpst1l (ENSAPEG00000016628) crcp (ENSAPEG00000016688) ENSAPEG00000016704 asl (ENSAPEG00000016734) ca4c (ENSAPEG00000016800) Spiny chromis MODERN SPECIES 673 ubtd2 (ENSAPOG00000009308) ENSAPOG00000009345 ublcp1 (ENSAPOG00000009397) RNF145 (ENSAPOG00000009468) EBF1 (ENSAPOG00000009533) ##22 CLINT1 (ENSAPOG00000009588) TCERG1 (ENSAPOG00000009625) ENSAPOG00000009654 PCYOX1L (ENSAPOG00000000273) CREBRF (ENSAPOG00000009721) BNIP1 (ENSAPOG00000009776) htatsf1 (ENSAPOG00000009823) ENSAPOG00000009867 ##32 tmtops3b (ENSAPOG00000001074) tpst1l (ENSAPOG00000009884) Bicolor damselfish MODERN SPECIES 1581 ADRB2 (ENSSPAG00000004532) ubtd2 (ENSSPAG00000004555) ENSSPAG00000004568 ublcp1 (ENSSPAG00000004604) RNF145 (ENSSPAG00000004634) EBF1 (ENSSPAG00000004674) ##22 Percomorphaceae_C ANCESTRAL SPECIES 10 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Percomorphaceae_D ANCESTRAL SPECIES 16 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Anabantaria ANCESTRAL SPECIES 13 ENSGT00940000156996.f.b ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b.e ENSGT00940000161042 ENSGT00940000155650.a.b.f ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Zig-zag eel MODERN SPECIES 5 ENSMAMG00000021308 ENSMAMG00000021306 ENSMAMG00000021305 ENSMAMG00000026960 znrd2 (ENSMAMG00000021302) arr3a (ENSMAMG00000021288) f9b (ENSMAMG00000021280) fgf13b (ENSMAMG00000021278) ENSMAMG00000021277 ENSMAMG00000021268 ENSMAMG00000028249 ubtd2 (ENSMAMG00000021262) ENSMAMG00000021258 ublcp1 (ENSMAMG00000021251) RNF145 (ENSMAMG00000021243) EBF1 (ENSMAMG00000021229) ##22 ENSMAMG00000021225 bod1 (ENSMAMG00000021222) STC2 (ENSMAMG00000028227) ##32 ENSMAMG00000021210 CREBRF (ENSMAMG00000021202) ENSMAMG00000021200 ENSMAMG00000021183 ENSMAMG00000021172 tpst1l (ENSMAMG00000021169) crcp (ENSMAMG00000021168) ENSMAMG00000021167 ENSMAMG00000028256 asl (ENSMAMG00000021163) ca4c (ENSMAMG00000021162) aldh3a2b (ENSMAMG00000021156) Anabantoidei ANCESTRAL SPECIES 12 ENSGT00390000007335 ENSGT00940000156996.f.b ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b.e ENSGT00940000161042 ENSGT00940000155650.a.b.f ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Climbing perch MODERN SPECIES 5 ENSATEG00000009590 ENSATEG00000009572 ENSATEG00000009536 znrd2 (ENSATEG00000009457) arr3a (ENSATEG00000009399) ENSATEG00000029303 f9b (ENSATEG00000009307) fgf13b (ENSATEG00000009279) ENSATEG00000009262 ENSATEG00000009150 ENSATEG00000026283 ubtd2 (ENSATEG00000009133) IL12B (ENSATEG00000009107) ublcp1 (ENSATEG00000009067) RNF145 (ENSATEG00000009011) EBF1 (ENSATEG00000008930) ##22 ENSATEG00000008903 bod1 (ENSATEG00000028746) STC2 (ENSATEG00000008869) ##32 ENSATEG00000025959 CREBRF (ENSATEG00000008829) ENSATEG00000008819 ENSATEG00000008799 ENSATEG00000026150 ENSATEG00000008713 tpst1l (ENSATEG00000008696) crcp (ENSATEG00000008670) ENSATEG00000008657 asl (ENSATEG00000008589) ca4c (ENSATEG00000008574) aldh3a2b (ENSATEG00000008559) Siamese fighting fish MODERN SPECIES 5 ENSBSLG00000005847 ENSBSLG00000006527 ENSBSLG00000006904 arr3a (ENSBSLG00000006943) MCF2 (ENSBSLG00000007277) f9b (ENSBSLG00000007295) fgf13b (ENSBSLG00000007304) fgf13b (ENSBSLG00000007364) afap1l1b (ENSBSLG00000007409) ablim3 (ENSBSLG00000007431) ENSBSLG00000007652 ubtd2 (ENSBSLG00000007655) ENSBSLG00000007661 ublcp1 (ENSBSLG00000007663) RNF145 (ENSBSLG00000007668) EBF1 (ENSBSLG00000007687) ##22 htatsf1 (ENSBSLG00000008470) ENSBSLG00000008662 bod1 (ENSBSLG00000008667) STC2 (ENSBSLG00000008679) ##32 STC2 (ENSBSLG00000008694) ##32 BNIP1 (ENSBSLG00000008712) CREBRF (ENSBSLG00000008717) PCYOX1L (ENSBSLG00000008733) ENSBSLG00000008743 ENSBSLG00000008751 ENSBSLG00000008764 TCERG1 (ENSBSLG00000008766) CLINT1 (ENSBSLG00000008808) ENSBSLG00000008831 tpst1l (ENSBSLG00000008838) Carangaria ANCESTRAL SPECIES 16 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Carangaria_A ANCESTRAL SPECIES 8 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Seriola ANCESTRAL SPECIES 2 ENSGT00390000004124.i ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a ENSGT00920000149180.a Yellowtail amberjack MODERN SPECIES 3182 ENSSLDG00000006214 ENSSLDG00000006034 FAM89B (ENSSLDG00000005992) znrd2 (ENSSLDG00000005954) arr3a (ENSSLDG00000005892) MCF2 (ENSSLDG00000005831) f9b (ENSSLDG00000005785) fgf13b (ENSSLDG00000005756) afap1l1b (ENSSLDG00000005707) ablim3 (ENSSLDG00000005644) ADRB2 (ENSSLDG00000005630) ubtd2 (ENSSLDG00000005600) IL12B (ENSSLDG00000005564) ublcp1 (ENSSLDG00000005505) RNF145 (ENSSLDG00000005450) EBF1 (ENSSLDG00000005360) ##22 Greater amberjack MODERN SPECIES 15 ENSSDUG00000020670 ENSSDUG00000020657 FAM89B (ENSSDUG00000020652) znrd2 (ENSSDUG00000020640) arr3a (ENSSDUG00000020460) MCF2 (ENSSDUG00000020394) f9b (ENSSDUG00000020377) fgf13b (ENSSDUG00000020368) afap1l1b (ENSSDUG00000020317) ablim3 (ENSSDUG00000020212) ADRB2 (ENSSDUG00000020160) ubtd2 (ENSSDUG00000020150) IL12B (ENSSDUG00000020130) ublcp1 (ENSSDUG00000020092) RNF145 (ENSSDUG00000020056) EBF1 (ENSSDUG00000020020) ##22 htatsf1 (ENSSDUG00000020002) ENSSDUG00000019984 STC2 (ENSSDUG00000019965) ##32 BNIP1 (ENSSDUG00000019948) CREBRF (ENSSDUG00000019886) PCYOX1L (ENSSDUG00000019862) TCERG1 (ENSSDUG00000019753) ENSSDUG00000019725 CLINT1 (ENSSDUG00000019673) tpst1l (ENSSDUG00000019645) crcp (ENSSDUG00000019628) ENSSDUG00000019615 asl (ENSSDUG00000019562) ca4c (ENSSDUG00000019547) aldh3a2b (ENSSDUG00000019529) Barramundi perch MODERN SPECIES 94 ENSLCAG00010020519 FAM89B (ENSLCAG00010020520) znrd2 (ENSLCAG00010020521) arr3a (ENSLCAG00010020523) MCF2 (ENSLCAG00010020530) f9b (ENSLCAG00010020548) fgf13b (ENSLCAG00010020552) afap1l1b (ENSLCAG00010020555) ablim3 (ENSLCAG00010020559) ENSLCAG00010020565 ADRB2 (ENSLCAG00010020568) ubtd2 (ENSLCAG00010020575) IL12B (ENSLCAG00010020580) ublcp1 (ENSLCAG00010020583) RNF145 (ENSLCAG00010020593) EBF1 (ENSLCAG00010020655) ##22 CLINT1 (ENSLCAG00010020851) ENSLCAG00010020854 TCERG1 (ENSLCAG00010020910) PCYOX1L (ENSLCAG00010021088) CREBRF (ENSLCAG00010021095) BNIP1 (ENSLCAG00010021103) STC2 (ENSLCAG00010021108) ##32 bod1 (ENSLCAG00010021113) htatsf1 (ENSLCAG00010021118) tmtops3b (ENSLCAG00010021127) tpst1l (ENSLCAG00010021131) crcp (ENSLCAG00010021133) ENSLCAG00010021134 asl (ENSLCAG00010021164) ca4c (ENSLCAG00010021202) Pleuronectoidei ANCESTRAL SPECIES 23 ENSGT00940000156996.f.b ENSGT00390000004124.i ENSGT00940000161027.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 Tongue sole MODERN SPECIES 10 ENSCSEG00000019756 ENSCSEG00000019760 ENSCSEG00000019780 znrd2 (ENSCSEG00000019789) arr3a (ENSCSEG00000019793) MCF2 (ENSCSEG00000019810) f9b (ENSCSEG00000019826) fgf13b (ENSCSEG00000019840) afap1l1b (ENSCSEG00000019859) ablim3 (ENSCSEG00000019869) ENSCSEG00000019904 ubtd2 (ENSCSEG00000019907) IL12B (ENSCSEG00000019912) ublcp1 (ENSCSEG00000019918) RNF145 (ENSCSEG00000019927) EBF1 (ENSCSEG00000019931) ##22 thoc2 (ENSCSEG00000019946) stag2a (ENSCSEG00000019962) ENSCSEG00000019978 ENSCSEG00000019987 ENSCSEG00000019993 myo1ca (ENSCSEG00000020002) ENSCSEG00000020025 DSCAML1 (ENSCSEG00000020036) LTBP3 (ENSCSEG00000020073) ENSCSEG00000020103 ENSCSEG00000020107 KLHL9 (ENSCSEG00000020109) WDR44 (ENSCSEG00000020110) zgc:163098 (ENSCSEG00000020119) LRCH2 (ENSCSEG00000020135) Turbot MODERN SPECIES 16 ENSSMAG00000021794 STC2 (ENSSMAG00000002986) ##32 ENSSMAG00000002865 ENSSMAG00000002970 znrd2 (ENSSMAG00000002957) arr3a (ENSSMAG00000002928) ENSSMAG00000002888 fgf13b (ENSSMAG00000002856) ENSSMAG00000002828 ENSSMAG00000002722 ENSSMAG00000002705 ubtd2 (ENSSMAG00000002687) IL12B (ENSSMAG00000002666) ublcp1 (ENSSMAG00000002625) RNF145 (ENSSMAG00000002608) EBF1 (ENSSMAG00000002578) ##22 ENSSMAG00000002279 ENSSMAG00000033947 ENSSMAG00000002252 ENSSMAG00000002154 ENSSMAG00000002131 ENSSMAG00000002055 ENSSMAG00000001983 ENSSMAG00000001966 ENSSMAG00000001953 slc7a3a (ENSSMAG00000001935) snx12 (ENSSMAG00000001920) ENSSMAG00000001902 ENSSMAG00000001819 ENSSMAG00000001803 ENSSMAG00000001756 Eupercaria ANCESTRAL SPECIES 17 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Tetraodontidae ANCESTRAL SPECIES 6 ENSGT00940000154049.a ENSGT00940000160421.j ENSGT00940000163922.a.e ENSGT00940000166536 ENSGT00510000047446 ENSGT00940000158885 ENSGT00940000159212.b ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.a.a ENSGT00530000063975.j.b ENSGT01020000230354.B.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00940000155650.a.b ENSGT00940000157770 ENSGT00390000011206.b ENSGT00390000007125.b ENSGT00390000014412.k ENSGT00390000005989.a.b.a.b ##32 ENSGT00940000156198.c.b ENSGT00390000009902 ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a ENSGT00920000149180.a Fugu MODERN SPECIES 6 ENSTRUG00000014481 supt6h (ENSTRUG00000014399) sdf2 (ENSTRUG00000014371) ENSTRUG00000014343 cbln17 (ENSTRUG00000030847) cbln17 (ENSTRUG00000030103) cbln17 (ENSTRUG00000014339) cbln17 (ENSTRUG00000030547) mettl27 (ENSTRUG00000014311) nf2b (ENSTRUG00000014195) ADRB2 (ENSTRUG00000014131) ubtd2 (ENSTRUG00000020332) ENSTRUG00000014071 ublcp1 (ENSTRUG00000014010) RNF145 (ENSTRUG00000013909) EBF1 (ENSTRUG00000013805) ##22 CLINT1 (ENSTRUG00000013748) TCERG1 (ENSTRUG00000013639) PCYOX1L (ENSTRUG00000013590) CREBRF (ENSTRUG00000013514) BNIP1 (ENSTRUG00000027694) STC2 (ENSTRUG00000013474) ##32 htatsf1 (ENSTRUG00000013383) tmtops3b (ENSTRUG00000013247) tpst1l (ENSTRUG00000013179) crcp (ENSTRUG00000025161) asl (ENSTRUG00000012953) ca4c (ENSTRUG00000012774) aldh3a2b (ENSTRUG00000012525) ENSTRUG00000031704 vtnb (ENSTRUG00000012463) Tetraodon MODERN SPECIES 22 ENSTNIG00000016160 slc47a1 (ENSTNIG00000016159) ENSTNIG00000016158 supt6h (ENSTNIG00000016157) sdf2 (ENSTNIG00000000130) ENSTNIG00000016156 ENSTNIG00000000974 ENSTNIG00000016155 mettl27 (ENSTNIG00000016154) nf2b (ENSTNIG00000016153) ADRB2 (ENSTNIG00000016152) ubtd2 (ENSTNIG00000016151) IL12B (ENSTNIG00000001795) ublcp1 (ENSTNIG00000016150) RNF145 (ENSTNIG00000016149) EBF1 (ENSTNIG00000016148) ##22 CLINT1 (ENSTNIG00000016147) TCERG1 (ENSTNIG00000016146) ENSTNIG00000016145 CREBRF (ENSTNIG00000016144) BNIP1 (ENSTNIG00000016143) STC2 (ENSTNIG00000016142) ##32 bod1 (ENSTNIG00000016141) htatsf1 (ENSTNIG00000016140) tmtops3b (ENSTNIG00000016139) tpst1l (ENSTNIG00000016138) crcp (ENSTNIG00000016137) asl (ENSTNIG00000016136) ca4c (ENSTNIG00000016135) aldh3a2b (ENSTNIG00000016134) vtnb (ENSTNIG00000016133) Eupecaria_A ANCESTRAL SPECIES 17 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Ballan wrasse MODERN SPECIES 79 ENSLBEG00000001592 ADRB2 (ENSLBEG00000001430) ubtd2 (ENSLBEG00000001406) ENSLBEG00000001365 ublcp1 (ENSLBEG00000001310) RNF145 (ENSLBEG00000001256) EBF1 (ENSLBEG00000001189) ##22 htatsf1 (ENSLBEG00000001154) ENSLBEG00000001137 BNIP1 (ENSLBEG00000001098) CREBRF (ENSLBEG00000001041) PCYOX1L (ENSLBEG00000000989) TCERG1 (ENSLBEG00000000954) ENSLBEG00000000880 tpst1l (ENSLBEG00000000840) crcp (ENSLBEG00000000804) ENSLBEG00000000790 asl (ENSLBEG00000000732) ca4c (ENSLBEG00000000709) aldh3a2b (ENSLBEG00000000657) ENSLBEG00000000620 vtnb (ENSLBEG00000000550) Eupecaria_B ANCESTRAL SPECIES 17 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Perciformes ANCESTRAL SPECIES 22 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Cottioidei ANCESTRAL SPECIES 10 ENSGT00390000004124.i ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a Lumpfish MODERN SPECIES 5 ENSCLMG00005005288 EHBP1L1 (ENSCLMG00005005276) FAM89B (ENSCLMG00005005274) znrd2 (ENSCLMG00005005273) arr3a (ENSCLMG00005005270) MCF2 (ENSCLMG00005005267) f9b (ENSCLMG00005005044) fgf13b (ENSCLMG00005005005) afap1l1b (ENSCLMG00005004996) ABLIM3 (ENSCLMG00005004981) ADRB2 (ENSCLMG00005004873) ubtd2 (ENSCLMG00005004863) IL12B (ENSCLMG00005004829) ublcp1 (ENSCLMG00005004823) RNF145 (ENSCLMG00005004819) EBF1 (ENSCLMG00005004801) ##22 htatsf1 (ENSCLMG00005004701) bod1 (ENSCLMG00005004676) STC2 (ENSCLMG00005004659) ##32 BNIP1 (ENSCLMG00005004636) CREBRF (ENSCLMG00005004612) PCYOX1L (ENSCLMG00005004338) TCERG1 (ENSCLMG00005014974) ENSCLMG00005014951 tmtops3b (ENSCLMG00005014888) tpst1l (ENSCLMG00005014883) crcp (ENSCLMG00005014880) asl (ENSCLMG00005014878) asl (ENSCLMG00005014770) asl (ENSCLMG00005014769) asl (ENSCLMG00005014768) Stickleback MODERN SPECIES 7 ENSGACG00000020443 ENSGACG00000020444 znrd2 (ENSGACG00000020445) arr3a (ENSGACG00000020446) MCF2 (ENSGACG00000020447) ENSGACG00000020448 f9b (ENSGACG00000020449) fgf13b (ENSGACG00000020450) afap1l1b (ENSGACG00000020451) ablim3 (ENSGACG00000020452) ADRB2 (ENSGACG00000020453) ubtd2 (ENSGACG00000020454) IL12B (ENSGACG00000020455) ublcp1 (ENSGACG00000020456) RNF145 (ENSGACG00000020457) EBF1 (ENSGACG00000020458) ##22 htatsf1 (ENSGACG00000020459) bod1 (ENSGACG00000020460) BNIP1 (ENSGACG00000020461) CREBRF (ENSGACG00000020462) PCYOX1L (ENSGACG00000020463) TCERG1 (ENSGACG00000020464) ENSGACG00000020465 tmtops3b (ENSGACG00000020466) tpst1l (ENSGACG00000020467) crcp (ENSGACG00000020468) ENSGACG00000020469 asl (ENSGACG00000020470) ca4c (ENSGACG00000020471) aldh3a2b (ENSGACG00000020472) vtnb (ENSGACG00000020473) Perciformes_a ANCESTRAL SPECIES 20 ENSGT00940000179094 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Channel bull blenny MODERN SPECIES 5 ENSCGOG00000002218 ENSCGOG00000002205 FAM89B (ENSCGOG00000002201) znrd2 (ENSCGOG00000002199) arr3a (ENSCGOG00000002149) MCF2 (ENSCGOG00000002108) f9b (ENSCGOG00000002069) fgf13b (ENSCGOG00000002054) afap1l1b (ENSCGOG00000002048) ablim3 (ENSCGOG00000002042) ADRB2 (ENSCGOG00000002027) ubtd2 (ENSCGOG00000002024) IL12B (ENSCGOG00000002018) ublcp1 (ENSCGOG00000001909) RNF145 (ENSCGOG00000001840) EBF1 (ENSCGOG00000001634) ##22 htatsf1 (ENSCGOG00000014980) bod1 (ENSCGOG00000014976) STC2 (ENSCGOG00000014964) ##32 BNIP1 (ENSCGOG00000014957) CREBRF (ENSCGOG00000014949) PCYOX1L (ENSCGOG00000014943) TCERG1 (ENSCGOG00000014714) ENSCGOG00000014707 ENSCGOG00000014705 tmtops3b (ENSCGOG00000014693) tpst1l (ENSCGOG00000014692) crcp (ENSCGOG00000014680) ENSCGOG00000014673 ENSCGOG00000014665 asl (ENSCGOG00000012738) Pike perch MODERN SPECIES 54 ENSSLUG00000001820 ENSSLUG00000001830 FAM89B (ENSSLUG00000001839) znrd2 (ENSSLUG00000001844) arr3a (ENSSLUG00000001877) MCF2 (ENSSLUG00000001968) f9b (ENSSLUG00000001995) fgf13b (ENSSLUG00000002001) afap1l1b (ENSSLUG00000002083) ablim3 (ENSSLUG00000002122) ADRB2 (ENSSLUG00000002154) ubtd2 (ENSSLUG00000002159) IL12B (ENSSLUG00000002170) ublcp1 (ENSSLUG00000002180) RNF145 (ENSSLUG00000002193) EBF1 (ENSSLUG00000002218) ##22 htatsf1 (ENSSLUG00000002251) bod1 (ENSSLUG00000002291) STC2 (ENSSLUG00000002300) ##32 BNIP1 (ENSSLUG00000002323) CREBRF (ENSSLUG00000002328) PCYOX1L (ENSSLUG00000002331) TCERG1 (ENSSLUG00000002376) ENSSLUG00000002914 ENSSLUG00000002966 tmtops3b (ENSSLUG00000003282) tpst1l (ENSSLUG00000003289) crcp (ENSSLUG00000003300) ENSSLUG00000003318 asl (ENSSLUG00000003375) ca4c (ENSSLUG00000003667) Eupecaria_C ANCESTRAL SPECIES 15 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00390000011206.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a Gilthead seabream MODERN SPECIES 4 ENSSAUG00010011361 ENSSAUG00010011366 FAM89B (ENSSAUG00010011372) znrd2 (ENSSAUG00010011373) arr3a (ENSSAUG00010011383) ENSSAUG00010011795 fgf13b (ENSSAUG00010011799) afap1l1b (ENSSAUG00010011804) ablim3 (ENSSAUG00010011815) ENSSAUG00010011821 ADRB2 (ENSSAUG00010011822) ubtd2 (ENSSAUG00010011825) IL12B (ENSSAUG00010011827) ublcp1 (ENSSAUG00010011828) RNF145 (ENSSAUG00010011831) EBF1 (ENSSAUG00010011838) ##22 crcp (ENSSAUG00010011882) CLINT1 (ENSSAUG00010011892) TCERG1 (ENSSAUG00010011896) PCYOX1L (ENSSAUG00010011914) CREBRF (ENSSAUG00010011917) BNIP1 (ENSSAUG00010011920) STC2 (ENSSAUG00010011922) ##32 bod1 (ENSSAUG00010011927) tmtops3b (ENSSAUG00010011929) tpst1l (ENSSAUG00010011935) ENSSAUG00010011937 ENSSAUG00010011938 asl (ENSSAUG00010011970) ca4c (ENSSAUG00010014599) aldh3a2b (ENSSAUG00010014626) Eupercaria_incertae_sedis ANCESTRAL SPECIES 12 ENSGT00940000161027.a ENSGT00940000153370.a.a ENSGT00390000013169 ENSGT00950000182887.C.b.b.a ENSGT00940000156974.e.b ENSGT00940000159516 ENSGT00940000162313.b ENSGT00950000183067.a.b.a.c ENSGT00950000182850.a.b.a.b.b ENSGT00950000182850.a.b.a.b.a.a ENSGT00940000159538.h ENSGT00940000156641 ENSGT00390000012630.A.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b.d.c.b ##22 ENSGT00390000009902 ENSGT00940000156198.c.b ENSGT00390000005989.a.b.a.b ##32 ENSGT00390000014412.k ENSGT00390000007125.b ENSGT00940000157770 ENSGT00940000161042 ENSGT00940000155650.a.b ENSGT01100000263502.A.a.a.a.a.b ENSGT00390000006030.d.a.a ENSGT00390000014189 ENSGT00390000005182.k ENSGT00950000183122.B ENSGT00940000155690.a ENSGT00940000165264.a European seabass MODERN SPECIES 4 ENSDLAG00005001837 ENSDLAG00005001826 ENSDLAG00005029223 ENSDLAG00005027186 arr3a (ENSDLAG00005001553) MCF2 (ENSDLAG00005001180) f9b (ENSDLAG00005028462) fgf13b (ENSDLAG00005001154) ENSDLAG00005001131 ENSDLAG00005001118 ENSDLAG00005001112 ubtd2 (ENSDLAG00005034075) IL12B (ENSDLAG00005001099) ublcp1 (ENSDLAG00005001095) RNF145 (ENSDLAG00005001084) EBF1 (ENSDLAG00005001006) ##22 ENSDLAG00005000984 ENSDLAG00005029702 BNIP1 (ENSDLAG00005028746) ENSDLAG00005034378 ##32 ENSDLAG00005031176 ENSDLAG00005000752 ENSDLAG00005000723 ENSDLAG00005000717 ENSDLAG00005000699 tpst1l (ENSDLAG00005000690) ENSDLAG00005000684 ENSDLAG00005000330 ca4c (ENSDLAG00005000273) aldh3a2b (ENSDLAG00005000229) ENSDLAG00005000189 Large yellow croaker MODERN SPECIES 493 ubtd2 (ENSLCRG00005012927) IL12B (ENSLCRG00005012929) ublcp1 (ENSLCRG00005012930) ENSLCRG00005012932 RNF145 (ENSLCRG00005012936) EBF1 (ENSLCRG00005012955) ##22 ENSLCRG00005013046 CLINT1 (ENSLCRG00005013049) TCERG1 (ENSLCRG00005013055) CREBRF (ENSLCRG00005013069) BNIP1 (ENSLCRG00005013071) STC2 (ENSLCRG00005013074) ##32 bod1 (ENSLCRG00005013076) htatsf1 (ENSLCRG00005013078) tmtops3b (ENSLCRG00005013082) tpst1l (ENSLCRG00005013083) crcp (ENSLCRG00005013084) asl (ENSLCRG00005013095) ca4c (ENSLCRG00005014002) aldh3a2b (ENSLCRG00005014004) ENSLCRG00005014014 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.d.d ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b.d.d ##22 Northern pike MODERN SPECIES 6 ENSELUG00000021723 fam53c (ENSELUG00000021751) slbp2 (ENSELUG00000021799) zmat2 (ENSELUG00000021857) ENSELUG00000021946 foxi3a (ENSELUG00000021971) nhp2 (ENSELUG00000021981) grpel2 (ENSELUG00000022001) afap1l1b (ENSELUG00000022026) ablim3 (ENSELUG00000022091) adrb2b (ENSELUG00000022105) ubtd2 (ENSELUG00000022138) IL12B (ENSELUG00000022176) ublcp1 (ENSELUG00000022212) rnf145b (ENSELUG00000022258) EBF1 (ENSELUG00000022383) ##22 CLINT1 (ENSELUG00000022458) ENSELUG00000022471 TCERG1 (ENSELUG00000022544) PPP2R2B (ENSELUG00000022606) ##21 PCYOX1L (ENSELUG00000022655) ATP6V0E1 (ENSELUG00000025753) CREBRF (ENSELUG00000022756) BNIP1 (ENSELUG00000028774) STC2 (ENSELUG00000029462) ##32 bod1 (ENSELUG00000022818) CPEB4 (ENSELUG00000033579) CPEB4 (ENSELUG00000022898) CPEB4 (ENSELUG00000030722) nsg2 (ENSELUG00000022939) ENSELUG00000032902 Reedfish MODERN SPECIES 2 rpl26 (ENSECRG00000012885) ATP6V0E1 (ENSECRG00000012875) CREBRF (ENSECRG00000012865) BNIP1 (ENSECRG00000012851) BNIP1 (ENSECRG00000012841) nkx2.5 (ENSECRG00000012831) stc2a (ENSECRG00000012818) ##32 BOD1 (ENSECRG00000012812) CPEB4 (ENSECRG00000012778) nsg2 (ENSECRG00000012742) MSX2 (ENSECRG00000012727) drd1b (ENSECRG00000012720) ublcp1 (ENSECRG00000012695) rnf145b (ENSECRG00000012658) ENSECRG00000012625 ebf3a (ENSECRG00000012609) ##22 clint1a (ENSECRG00000012588) LSM11 (ENSECRG00000012570) thg1l (ENSECRG00000012548) ENSECRG00000012360 TBC1D9B (ENSECRG00000012193) rnf130 (ENSECRG00000012143) F2RL3 (ENSECRG00000012122) ENSECRG00000012105 ENSECRG00000012083 ENSECRG00000012066 ENSECRG00000012052 PCDH1 (ENSECRG00000012042) ENSECRG00000011989 ENSECRG00000011972 ENSECRG00000011959 Sarcopterygii ANCESTRAL SPECIES 41 ENSGT00390000012630.A ENSGT00940000159140.c.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b ENSGT00940000157328.C Coelacanth DUPLICATION Coelacanth MODERN SPECIES 371 RNF145 (ENSLACG00000017538) ENSLACG00000017503 ##22 ENSLACG00000016818 ##22 CLINT1 (ENSLACG00000015657) LSM11 (ENSLACG00000015576) THG1L (ENSLACG00000015528) SOX30 (ENSLACG00000015447) ADAM19 (ENSLACG00000015210) NIPAL4 (ENSLACG00000015118) FNDC9 (ENSLACG00000014861) CYFIP2 (ENSLACG00000014673) ITK (ENSLACG00000014337) MED7 (ENSLACG00000014286) ENSLACG00000014127 ENSLACG00000013453 ENSLACG00000011430 MRPL22 (ENSLACG00000003356) Coelacanth MODERN SPECIES 371 RNF145 (ENSLACG00000017538) ENSLACG00000017503 ##22 ENSLACG00000016818 ##22 CLINT1 (ENSLACG00000015657) LSM11 (ENSLACG00000015576) THG1L (ENSLACG00000015528) SOX30 (ENSLACG00000015447) ADAM19 (ENSLACG00000015210) NIPAL4 (ENSLACG00000015118) FNDC9 (ENSLACG00000014861) CYFIP2 (ENSLACG00000014673) ITK (ENSLACG00000014337) MED7 (ENSLACG00000014286) ENSLACG00000014127 ENSLACG00000013453 ENSLACG00000011430 MRPL22 (ENSLACG00000003356) GEMIN5 (ENSLACG00000001950) Tetrapoda ANCESTRAL SPECIES 27 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00950000185681 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00940000159140.c.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 Anura ANCESTRAL SPECIES 220 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00940000159140.c.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B Leishan spiny toad DUPLICATION Leishan spiny toad MODERN SPECIES 6 ENSLLEG00000007626 NDST1 (ENSLLEG00000007339) ENSLLEG00000007213 ENSLLEG00000007188 ENSLLEG00000007158 ENSLLEG00000007134 TTC1 (ENSLLEG00000007081) ADRA1B (ENSLLEG00000007056) ENSLLEG00000007034 IL12B (ENSLLEG00000006990) ENSLLEG00000006946 UBLCP1 (ENSLLEG00000006838) ENSLLEG00000006810 RNF145 (ENSLLEG00000006621) ENSLLEG00000006554 ENSLLEG00000006529 ##22 ENSLLEG00000006373 ##22 CLINT1 (ENSLLEG00000006185) LSM11 (ENSLLEG00000006120) ENSLLEG00000006108 ADAM19 (ENSLLEG00000006005) ENSLLEG00000005859 C12orf4 (ENSLLEG00000005608) ENSLLEG00000005553 ENSLLEG00000005544 ENSLLEG00000005520 FGF6 (ENSLLEG00000005498) ENSLLEG00000005476 FGF23 (ENSLLEG00000005455) ENSLLEG00000005429 CCND2 (ENSLLEG00000005348) Leishan spiny toad MODERN SPECIES 6 NDST1 (ENSLLEG00000007339) ENSLLEG00000007213 ENSLLEG00000007188 ENSLLEG00000007158 ENSLLEG00000007134 TTC1 (ENSLLEG00000007081) ADRA1B (ENSLLEG00000007056) ENSLLEG00000007034 IL12B (ENSLLEG00000006990) ENSLLEG00000006946 UBLCP1 (ENSLLEG00000006838) ENSLLEG00000006810 RNF145 (ENSLLEG00000006621) ENSLLEG00000006554 ENSLLEG00000006529 ##22 ENSLLEG00000006373 ##22 CLINT1 (ENSLLEG00000006185) LSM11 (ENSLLEG00000006120) ENSLLEG00000006108 ADAM19 (ENSLLEG00000006005) ENSLLEG00000005859 C12orf4 (ENSLLEG00000005608) ENSLLEG00000005553 ENSLLEG00000005544 ENSLLEG00000005520 FGF6 (ENSLLEG00000005498) ENSLLEG00000005476 FGF23 (ENSLLEG00000005455) ENSLLEG00000005429 CCND2 (ENSLLEG00000005348) ENSLLEG00000005322 Frog MODERN SPECIES 3 ENSXETG00000044367 nmur2 (ENSXETG00000001947) ENSXETG00000043513 glra1 (ENSXETG00000001966) ENSXETG00000049460 ENSXETG00000031824 ENSXETG00000038193 ENSXETG00000046538 ENSXETG00000032320 adra1b (ENSXETG00000043868) IL12B (ENSXETG00000046319) ENSXETG00000041467 ENSXETG00000032841 ublcp1 (ENSXETG00000016360) rnf145 (ENSXETG00000016361) ebf4 (ENSXETG00000034650) ##22 clint1 (ENSXETG00000001496) lsm11 (ENSXETG00000037324) adam19 (ENSXETG00000034170) nipal4 (ENSXETG00000001501) cyfip2 (ENSXETG00000001502) itk (ENSXETG00000033235) med7 (ENSXETG00000001505) ENSXETG00000046554 timd4 (ENSXETG00000046998) ENSXETG00000045603 ENSXETG00000048544 ENSXETG00000033749 ENSXETG00000041800 prmt8 (ENSXETG00000016651) ENSXETG00000042864 Amniota ANCESTRAL SPECIES 17 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00950000185681 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 Sauria ANCESTRAL SPECIES 17 ENSGT00940000158553.b.a ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT01090000260260 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000163509.b ENSGT00940000161609 ENSGT00940000159345 ENSGT00940000158509 ENSGT00390000002110 Lepidosauria ANCESTRAL SPECIES 15 ENSGT00940000158553.b.a ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT01090000260260.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000163509.b ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 tuatara MODERN SPECIES 880 ENSSPUG00000006502 NOP16 (ENSSPUG00000006508) ARL10 (ENSSPUG00000006518) ENSSPUG00000006523 KIAA1191 (ENSSPUG00000006555) SIMC1 (ENSSPUG00000006580) THOC3 (ENSSPUG00000006652) ENSSPUG00000006665 ENSSPUG00000006684 ENSSPUG00000006693 ENSSPUG00000006699 ENSSPUG00000006714 ENSSPUG00000006722 UBLCP1 (ENSSPUG00000006734) RNF145 (ENSSPUG00000006754) EBF1 (ENSSPUG00000006804) ##22 ENSSPUG00000006951 LSM11 (ENSSPUG00000007030) THG1L (ENSSPUG00000007060) SOX30 (ENSSPUG00000007072) ADAM19 (ENSSPUG00000007079) NIPAL4 (ENSSPUG00000007102) CYFIP2 (ENSSPUG00000007142) FNDC9 (ENSSPUG00000007390) ITK (ENSSPUG00000007395) ENSSPUG00000007417 Episquamata ANCESTRAL SPECIES 4 ENSGT00940000158553.b.a ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT01090000260260.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000163509.b ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b Toxicofera ANCESTRAL SPECIES 3 ENSGT00940000161160 ENSGT00940000158553.b.a ENSGT00940000157197 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01090000260260.b ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00950000182859.A.a.b.a.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Lizard DUPLICATION Lizard MODERN SPECIES 819 ENSACAG00000043932 ENSACAG00000037290 UBLCP1 (ENSACAG00000002895) RNF145 (ENSACAG00000002966) ENSACAG00000036357 ##22 EBF1 (ENSACAG00000003097) ##22 ENSACAG00000043139 ENSACAG00000041128 CLINT1 (ENSACAG00000003205) ENSACAG00000040027 LSM11 (ENSACAG00000003306) THG1L (ENSACAG00000003330) SOX30 (ENSACAG00000003369) ADAM19 (ENSACAG00000003397) NIPAL4 (ENSACAG00000038188) ENSACAG00000035371 CYFIP2 (ENSACAG00000003535) ITK (ENSACAG00000003690) MED7 (ENSACAG00000003858) ENSACAG00000028140 Lizard MODERN SPECIES 819 ENSACAG00000043932 ENSACAG00000037290 UBLCP1 (ENSACAG00000002895) RNF145 (ENSACAG00000002966) ENSACAG00000036357 ##22 EBF1 (ENSACAG00000003097) ##22 ENSACAG00000043139 ENSACAG00000041128 CLINT1 (ENSACAG00000003205) ENSACAG00000040027 LSM11 (ENSACAG00000003306) THG1L (ENSACAG00000003330) SOX30 (ENSACAG00000003369) ADAM19 (ENSACAG00000003397) NIPAL4 (ENSACAG00000038188) ENSACAG00000035371 CYFIP2 (ENSACAG00000003535) ITK (ENSACAG00000003690) MED7 (ENSACAG00000003858) ENSACAG00000028140 ENSACAG00000037855 Laterata ANCESTRAL SPECIES 1 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT01020000230731.A.b ENSGT01020000230731.B ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000163509.b ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b Common wall lizard MODERN SPECIES 10 ENSPMRG00000007839 ENSPMRG00000007837 HRH2 (ENSPMRG00000007833) ENSPMRG00000007828 ENSPMRG00000007824 ENSPMRG00000007820 ENSPMRG00000007815 ENSPMRG00000007811 ENSPMRG00000007804 ENSPMRG00000007803 ENSPMRG00000007800 ENSPMRG00000007796 ENSPMRG00000007793 UBLCP1 (ENSPMRG00000007786) RNF145 (ENSPMRG00000007773) ENSPMRG00000007766 ##22 EBF1 (ENSPMRG00000007754) ##22 ENSPMRG00000007750 ENSPMRG00000007745 CLINT1 (ENSPMRG00000007738) LSM11 (ENSPMRG00000007729) THG1L (ENSPMRG00000007708) SOX30 (ENSPMRG00000007702) ADAM19 (ENSPMRG00000007693) NIPAL4 (ENSPMRG00000007688) ENSPMRG00000007684 CYFIP2 (ENSPMRG00000007665) ITK (ENSPMRG00000007649) MED7 (ENSPMRG00000007642) ENSPMRG00000007641 ENSPMRG00000007636 Argentine black and white tegu MODERN SPECIES 97 ENSSMRG00000017642 ENSSMRG00000017643 ENSSMRG00000017644 ENSSMRG00000017650 ENSSMRG00000017651 ENSSMRG00000017654 ENSSMRG00000017655 ENSSMRG00000017656 ENSSMRG00000017657 UBLCP1 (ENSSMRG00000017658) RNF145 (ENSSMRG00000017660) ENSSMRG00000017661 ##22 ENSSMRG00000017663 ##22 CLINT1 (ENSSMRG00000017676) LSM11 (ENSSMRG00000017677) THG1L (ENSSMRG00000017679) SOX30 (ENSSMRG00000017680) ADAM19 (ENSSMRG00000017682) NIPAL4 (ENSSMRG00000017684) CYFIP2 (ENSSMRG00000017686) ITK (ENSSMRG00000017690) MED7 (ENSSMRG00000017725) ENSSMRG00000017726 ENSSMRG00000017732 ENSSMRG00000017733 Archelosauria ANCESTRAL SPECIES 15 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT00960000189302 ENSGT00940000165772.a ENSGT00520000060726 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 Archosauria ANCESTRAL SPECIES 17 ENSGT00940000160186 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00960000189302 ENSGT00940000165772.a ENSGT00520000060726 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 Australian saltwater crocodile MODERN SPECIES 34 KIAA1191 (ENSCPRG00005013543) ENSCPRG00005013541 THOC3 (ENSCPRG00005013537) ENSCPRG00005013536 HRH2 (ENSCPRG00005013533) ENSCPRG00005013529 ENSCPRG00005013516 ENSCPRG00005013512 ENSCPRG00005013510 ENSCPRG00005013507 SPINK6 (ENSCPRG00005013506) ENSCPRG00005013504 ENSCPRG00005013502 UBLCP1 (ENSCPRG00005013500) RNF145 (ENSCPRG00005013497) EBF1 (ENSCPRG00005013387) ##22 CLINT1 (ENSCPRG00005013355) LSM11 (ENSCPRG00005013347) THG1L (ENSCPRG00005013345) SOX30 (ENSCPRG00005013341) ADAM19 (ENSCPRG00005013333) NIPAL4 (ENSCPRG00005013331) ENSCPRG00005013330 FNDC9 (ENSCPRG00005013326) CYFIP2 (ENSCPRG00005013254) ENSCPRG00005013241 ENSCPRG00005013239 ENSCPRG00005013237 MED7 (ENSCPRG00005013236) ENSCPRG00005013229 ENSCPRG00005013225 Aves ANCESTRAL SPECIES 15 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00930000151769 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00940000165772.a.a ENSGT00520000060726 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 African ostrich DUPLICATION African ostrich MODERN SPECIES 997 NOP16 (ENSSCUG00000013050) ARL10 (ENSSCUG00000013049) KIAA1191 (ENSSCUG00000013048) SIMC1 (ENSSCUG00000013046) ENSSCUG00000013044 HRH2 (ENSSCUG00000013041) ENSSCUG00000013039 ENSSCUG00000013034 ENSSCUG00000013033 ENSSCUG00000013032 ENSSCUG00000013031 SPINK6 (ENSSCUG00000013030) UBLCP1 (ENSSCUG00000013029) RNF145 (ENSSCUG00000013028) ENSSCUG00000013026 ##22 ENSSCUG00000013024 ##22 CLINT1 (ENSSCUG00000013019) LSM11 (ENSSCUG00000013018) THG1L (ENSSCUG00000013016) SOX30 (ENSSCUG00000013013) ADAM19 (ENSSCUG00000013008) NIPAL4 (ENSSCUG00000013004) FNDC9 (ENSSCUG00000013001) CYFIP2 (ENSSCUG00000012983) ITK (ENSSCUG00000012978) MED7 (ENSSCUG00000012973) ENSSCUG00000012968 ENSSCUG00000012967 SGCD (ENSSCUG00000012961) MRPL22 (ENSSCUG00000012957) GEMIN5 (ENSSCUG00000012925) African ostrich MODERN SPECIES 997 ENSSCUG00000013053 NOP16 (ENSSCUG00000013050) ARL10 (ENSSCUG00000013049) KIAA1191 (ENSSCUG00000013048) SIMC1 (ENSSCUG00000013046) ENSSCUG00000013044 HRH2 (ENSSCUG00000013041) ENSSCUG00000013039 ENSSCUG00000013034 ENSSCUG00000013033 ENSSCUG00000013032 ENSSCUG00000013031 SPINK6 (ENSSCUG00000013030) UBLCP1 (ENSSCUG00000013029) RNF145 (ENSSCUG00000013028) ENSSCUG00000013026 ##22 ENSSCUG00000013024 ##22 CLINT1 (ENSSCUG00000013019) LSM11 (ENSSCUG00000013018) THG1L (ENSSCUG00000013016) SOX30 (ENSSCUG00000013013) ADAM19 (ENSSCUG00000013008) NIPAL4 (ENSSCUG00000013004) FNDC9 (ENSSCUG00000013001) CYFIP2 (ENSSCUG00000012983) ITK (ENSSCUG00000012978) MED7 (ENSSCUG00000012973) ENSSCUG00000012968 ENSSCUG00000012967 SGCD (ENSSCUG00000012961) MRPL22 (ENSSCUG00000012957) Neognathae ANCESTRAL SPECIES 14 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00930000151769 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00940000165772.a.a ENSGT00940000165772.b ENSGT00960000189440 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Galloanserae ANCESTRAL SPECIES 14 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00930000151769 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00940000165772.a.a ENSGT00940000165772.b ENSGT00960000189440 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Anatidae ANCESTRAL SPECIES 15 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00930000151769 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00940000165772.a.a ENSGT00940000165772.b ENSGT00960000189440 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Pink-footed goose MODERN SPECIES 9 ARL10 (ENSABRG00000016741) KIAA1191 (ENSABRG00000016743) ENSABRG00000016748 THOC3 (ENSABRG00000016754) ENSABRG00000016760 HRH2 (ENSABRG00000016762) ENSABRG00000016764 ENSABRG00000016765 ENSABRG00000016767 ENSABRG00000016769 ENSABRG00000016776 ENSABRG00000016782 ENSABRG00000016784 UBLCP1 (ENSABRG00000016791) RNF145 (ENSABRG00000016793) EBF1 (ENSABRG00000016815) ##22 CLINT1 (ENSABRG00000016842) LSM11 (ENSABRG00000016849) THG1L (ENSABRG00000016860) SOX30 (ENSABRG00000016864) ADAM19 (ENSABRG00000016868) NIPAL4 (ENSABRG00000016877) CYFIP2 (ENSABRG00000016878) FNDC9 (ENSABRG00000016886) ITK (ENSABRG00000016889) MED7 (ENSABRG00000016895) ENSABRG00000016897 ENSABRG00000016902 SGCD (ENSABRG00000016926) MRPL22 (ENSABRG00000016966) GEMIN5 (ENSABRG00000016984) Duck MODERN SPECIES 5 CDHR2 (ENSAPLG00000009589) FAF2 (ENSAPLG00000009406) ENSAPLG00000001082 ENSAPLG00000024606 KIAA1191 (ENSAPLG00000009342) SIMC1 (ENSAPLG00000009331) THOC3 (ENSAPLG00000017550) ENSAPLG00000001223 ENSAPLG00000028713 ENSAPLG00000022398 ENSAPLG00000016124 ENSAPLG00000016711 ENSAPLG00000023164 UBLCP1 (ENSAPLG00000015997) RNF145 (ENSAPLG00000015567) EBF1 (ENSAPLG00000015476) ##22 CLINT1 (ENSAPLG00000013481) LSM11 (ENSAPLG00000026202) ENSAPLG00000013772 SOX30 (ENSAPLG00000013850) ADAM19 (ENSAPLG00000013888) NIPAL4 (ENSAPLG00000014781) CYFIP2 (ENSAPLG00000002692) ITK (ENSAPLG00000003452) MED7 (ENSAPLG00000000724) ENSAPLG00000004482 SGCD (ENSAPLG00000004614) ENSAPLG00000004546 MRPL22 (ENSAPLG00000021380) GEMIN5 (ENSAPLG00000006816) CNOT8 (ENSAPLG00000007128) Phasianidae ANCESTRAL SPECIES 14 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00930000151769 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00520000060726 ENSGT00940000165772.b ENSGT00960000189440 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.h ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Phasianidae_b ANCESTRAL SPECIES 18 ENSGT00910000144291 ENSGT00390000003426.a ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00530000064228 ENSGT00940000165772.a.b ENSGT00520000060726 ENSGT00940000165772.b ENSGT00960000189440 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.h ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Chicken MODERN SPECIES 4 ARL10 (ENSGALG00010014305) KIAA1191 (ENSGALG00010014312) SIMC1 (ENSGALG00010014465) THOC3 (ENSGALG00010014482) CPLX2 (ENSGALG00010014492) HRH2 (ENSGALG00010014576) ENSGALG00010014619 ENSGALG00010014664 SPINK5 (ENSGALG00010014696) SPINK7 (ENSGALG00010014724) ENSGALG00010014842 ENSGALG00010014850 ENSGALG00010014885 UBLCP1 (ENSGALG00010014900) RNF145 (ENSGALG00010014931) EBF1 (ENSGALG00010012921) ##22 CLINT1 (ENSGALG00010012945) LSM11 (ENSGALG00010012968) THG1L (ENSGALG00010016510) SOX30 (ENSGALG00010016513) ADAM19 (ENSGALG00010015002) NIPAL4 (ENSGALG00010015020) CYFIP2 (ENSGALG00010015037) FNDC9 (ENSGALG00010015074) ITK (ENSGALG00010015076) MED7 (ENSGALG00010015333) HAVCR1 (ENSGALG00010015098) TIMD4 (ENSGALG00010017367) SGCD (ENSGALG00010015483) MRPL22 (ENSGALG00010015523) GEMIN5 (ENSGALG00010015580) Japanese quail MODERN SPECIES 4 NOP16 (ENSCJPG00005011215) ARL10 (ENSCJPG00005011216) KIAA1191 (ENSCJPG00005011217) ENSCJPG00005011219 THOC3 (ENSCJPG00005011222) ENSCJPG00005011226 HRH2 (ENSCJPG00005011228) ENSCJPG00005011229 ENSCJPG00005011230 ENSCJPG00005011232 ENSCJPG00005011234 ENSCJPG00005011235 ENSCJPG00005011237 UBLCP1 (ENSCJPG00005011252) RNF145 (ENSCJPG00005011256) EBF1 (ENSCJPG00005011260) ##22 CLINT1 (ENSCJPG00005011334) LSM11 (ENSCJPG00005011335) SOX30 (ENSCJPG00005011336) THG1L (ENSCJPG00005011337) ADAM19 (ENSCJPG00005011338) NIPAL4 (ENSCJPG00005011339) ENSCJPG00005011340 FNDC9 (ENSCJPG00005011341) ENSCJPG00005011342 ITK (ENSCJPG00005011343) LCP2 (ENSCJPG00005011344) KCNMB1 (ENSCJPG00005011346) KCNIP1 (ENSCJPG00005011347) GABRP (ENSCJPG00005011349) ENSCJPG00005011350 Neognathae_b ANCESTRAL SPECIES 16 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00930000151769 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00520000060726 ENSGT01080000257888 ENSGT00940000165772.b ENSGT00960000189440 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Passeriformes ANCESTRAL SPECIES 14 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00530000064228 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00520000060726 ENSGT01080000257888 ENSGT00940000165772.b ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Great tit DUPLICATION Great tit MODERN SPECIES 23 SPR (ENSPMJG00000000078) EMX1 (ENSPMJG00000019542) SFXN5 (ENSPMJG00000019541) VAX2 (ENSPMJG00000019538) ENSPMJG00000019537 ENSPMJG00000019536 HSPA12B (ENSPMJG00000019534) ADISSP (ENSPMJG00000019533) SPEF1 (ENSPMJG00000019532) ENSPMJG00000019531 ENSPMJG00000019530 ##22 ENSPMJG00000019529 ##22 DYSF (ENSPMJG00000018671) CYP26B1 (ENSPMJG00000018667) ENSPMJG00000018664 EXOC6B (ENSPMJG00000018663) ENSPMJG00000018662 INO80B (ENSPMJG00000018661) WBP1 (ENSPMJG00000018660) MOGS (ENSPMJG00000018659) CCDC142 (ENSPMJG00000018658) ENSPMJG00000018657 LBX2 (ENSPMJG00000018656) PCGF1 (ENSPMJG00000018655) ENSPMJG00000018654 ENSPMJG00000018653 Great tit MODERN SPECIES 4 KIAA1191 (ENSPMJG00000007594) SIMC1 (ENSPMJG00000007597) THOC3 (ENSPMJG00000007599) ENSPMJG00000007601 HRH2 (ENSPMJG00000007605) ENSPMJG00000007610 ENSPMJG00000007612 ENSPMJG00000007614 ENSPMJG00000007632 ENSPMJG00000007638 ENSPMJG00000007646 ENSPMJG00000007648 SPINK6 (ENSPMJG00000007649) UBLCP1 (ENSPMJG00000007651) RNF145 (ENSPMJG00000007652) EBF1 (ENSPMJG00000007662) ##22 CLINT1 (ENSPMJG00000007709) LSM11 (ENSPMJG00000007710) THG1L (ENSPMJG00000007711) SOX30 (ENSPMJG00000007713) ADAM19 (ENSPMJG00000007716) NIPAL4 (ENSPMJG00000007737) CYFIP2 (ENSPMJG00000007739) FNDC9 (ENSPMJG00000007753) ITK (ENSPMJG00000007756) MED7 (ENSPMJG00000007759) ENSPMJG00000007761 ENSPMJG00000007763 SGCD (ENSPMJG00000007788) MRPL22 (ENSPMJG00000007789) GEMIN5 (ENSPMJG00000007790) Passeriformes_d ANCESTRAL SPECIES 15 ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00530000064228 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00940000165772.a.a ENSGT00520000060726 ENSGT01080000257888 ENSGT00940000165772.b ENSGT00960000189440 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Flycatcher MODERN SPECIES 4 ENSFALG00000008529 NOP16 (ENSFALG00000008553) KIAA1191 (ENSFALG00000008550) ENSFALG00000023171 THOC3 (ENSFALG00000008536) CPLX2 (ENSFALG00000024604) ENSFALG00000008525 ENSFALG00000027143 ENSFALG00000029028 ENSFALG00000008522 ENSFALG00000008519 ENSFALG00000008511 ENSFALG00000008509 UBLCP1 (ENSFALG00000008508) RNF145 (ENSFALG00000008505) EBF1 (ENSFALG00000008502) ##22 CLINT1 (ENSFALG00000008488) THG1L (ENSFALG00000028664) SOX30 (ENSFALG00000008470) ADAM19 (ENSFALG00000008445) NIPAL4 (ENSFALG00000008417) CYFIP2 (ENSFALG00000008410) FNDC9 (ENSFALG00000014386) ITK (ENSFALG00000008400) MED7 (ENSFALG00000014379) ENSFALG00000008393 ENSFALG00000008390 SGCD (ENSFALG00000008378) MRPL22 (ENSFALG00000008367) GEMIN5 (ENSFALG00000008360) CNOT8 (ENSFALG00000008343) Passeriformes_g ANCESTRAL SPECIES 15 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00530000064228 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00520000060726 ENSGT01080000257888 ENSGT00940000165772.b ENSGT00960000189440 ENSGT00390000010107 ENSGT00940000157281 ENSGT01000000220229 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Medium ground finch MODERN SPECIES 11 NOP16 (ENSGFOG00000001684) KIAA1191 (ENSGFOG00000001677) ENSGFOG00000001661 THOC3 (ENSGFOG00000001632) ENSGFOG00000001620 HRH2 (ENSGFOG00000001614) ENSGFOG00000001607 ENSGFOG00000001600 ENSGFOG00000001585 ENSGFOG00000001561 ENSGFOG00000001554 ENSGFOG00000001544 UBLCP1 (ENSGFOG00000001526) RNF145 (ENSGFOG00000001512) ENSGFOG00000001510 EBF1 (ENSGFOG00000001340) ##22 CLINT1 (ENSGFOG00000001320) THG1L (ENSGFOG00000001316) SOX30 (ENSGFOG00000001283) ADAM19 (ENSGFOG00000001150) NIPAL4 (ENSGFOG00000001072) FNDC9 (ENSGFOG00000001068) CYFIP2 (ENSGFOG00000001043) ITK (ENSGFOG00000000984) MED7 (ENSGFOG00000000972) ENSGFOG00000000963 ENSGFOG00000000953 SGCD (ENSGFOG00000000945) MRPL22 (ENSGFOG00000000923) GEMIN5 (ENSGFOG00000000722) CNOT8 (ENSGFOG00000000685) Passeroidea ANCESTRAL SPECIES 15 ENSGT00940000158129 ENSGT00950000182938.b.b.a ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00530000064228 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00520000060726 ENSGT01080000257888 ENSGT00940000165772.b ENSGT00960000189440 ENSGT00390000010107 ENSGT00940000157281 ENSGT01000000220229 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Zebra finch MODERN SPECIES 4 NOP16 (ENSTGUG00000000543) KIAA1191 (ENSTGUG00000023710) ENSTGUG00000000550 THOC3 (ENSTGUG00000000557) ENSTGUG00000023893 HRH2 (ENSTGUG00000000559) ENSTGUG00000000560 ENSTGUG00000025776 ENSTGUG00000027195 ENSTGUG00000000562 ENSTGUG00000000567 ENSTGUG00000000570 ENSTGUG00000000572 UBLCP1 (ENSTGUG00000000578) RNF145 (ENSTGUG00000000584) EBF1 (ENSTGUG00000000593) ##22 CLINT1 (ENSTGUG00000000611) LSM11 (ENSTGUG00000020439) THG1L (ENSTGUG00000000618) SOX30 (ENSTGUG00000000620) ADAM19 (ENSTGUG00000000622) NIPAL4 (ENSTGUG00000000631) FNDC9 (ENSTGUG00000000654) CYFIP2 (ENSTGUG00000000637) ITK (ENSTGUG00000000655) MED7 (ENSTGUG00000000675) ENSTGUG00000028125 ENSTGUG00000000678 SGCD (ENSTGUG00000023803) MRPL22 (ENSTGUG00000023797) GEMIN5 (ENSTGUG00000000688) Common canary DUPLICATION Common canary MODERN SPECIES 446 ENSSCAG00000000657 ##22 Common canary MODERN SPECIES 16 KIAA1191 (ENSSCAG00000013243) ENSSCAG00000013232 THOC3 (ENSSCAG00000013226) ENSSCAG00000013221 HRH2 (ENSSCAG00000013218) ENSSCAG00000013215 ENSSCAG00000013211 ENSSCAG00000013190 ENSSCAG00000013180 ENSSCAG00000013176 ENSSCAG00000013168 ENSSCAG00000013163 UBLCP1 (ENSSCAG00000013158) RNF145 (ENSSCAG00000013151) ENSSCAG00000013150 EBF1 (ENSSCAG00000013142) ##22 CLINT1 (ENSSCAG00000013135) THG1L (ENSSCAG00000013129) SOX30 (ENSSCAG00000013120) ADAM19 (ENSSCAG00000013049) ENSSCAG00000013029 NIPAL4 (ENSSCAG00000013026) ENSSCAG00000013025 FNDC9 (ENSSCAG00000013020) CYFIP2 (ENSSCAG00000013001) ITK (ENSSCAG00000012994) MED7 (ENSSCAG00000012989) ENSSCAG00000012984 ENSSCAG00000012980 SGCD (ENSSCAG00000012971) MRPL22 (ENSSCAG00000012965) Neognathae_c ANCESTRAL SPECIES 19 ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT00930000151769 ENSGT01030000235706 ENSGT00960000189302 ENSGT00940000165772.a.b ENSGT00940000165772.a.a ENSGT00520000060726 ENSGT01080000257888 ENSGT00940000165772.b ENSGT00960000189440 ENSGT00530000064225 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000163509.b ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Golden eagle MODERN SPECIES 14 THOC3 (ENSACCG00020016201) ENSACCG00020016210 ENSACCG00020016216 HRH2 (ENSACCG00020016225) ENSACCG00020016229 ENSACCG00020016238 ENSACCG00020016244 ENSACCG00020016254 ENSACCG00020016268 ENSACCG00020016274 ENSACCG00020016279 ENSACCG00020016286 UBLCP1 (ENSACCG00020016294) ENSACCG00020016303 RNF145 (ENSACCG00020016312) EBF1 (ENSACCG00020016347) ##22 CLINT1 (ENSACCG00020016366) LSM11 (ENSACCG00020016376) THG1L (ENSACCG00020016383) SOX30 (ENSACCG00020016391) ADAM19 (ENSACCG00020016427) NIPAL4 (ENSACCG00020011532) FNDC9 (ENSACCG00020011550) CYFIP2 (ENSACCG00020011575) ITK (ENSACCG00020011652) MED7 (ENSACCG00020011703) ENSACCG00020011732 ENSACCG00020011783 SGCD (ENSACCG00020011873) MRPL22 (ENSACCG00020011922) GEMIN5 (ENSACCG00020012365) Kakapo MODERN SPECIES 6 ENSSHBG00005009492 THOC3 (ENSSHBG00005009477) ENSSHBG00005009462 HRH2 (ENSSHBG00005009452) ENSSHBG00005009440 ENSSHBG00005009431 ENSSHBG00005009419 ENSSHBG00005009403 ENSSHBG00005009392 ENSSHBG00005009383 ENSSHBG00005009377 ENSSHBG00005009369 SPINK6 (ENSSHBG00005009351) UBLCP1 (ENSSHBG00005009334) RNF145 (ENSSHBG00005009313) EBF1 (ENSSHBG00005009234) ##22 CLINT1 (ENSSHBG00005009197) LSM11 (ENSSHBG00005009189) THG1L (ENSSHBG00005009179) SOX30 (ENSSHBG00005009165) ADAM19 (ENSSHBG00005009123) NIPAL4 (ENSSHBG00005009107) FNDC9 (ENSSHBG00005009102) CYFIP2 (ENSSHBG00005009091) ITK (ENSSHBG00005009050) MED7 (ENSSHBG00005009037) ENSSHBG00005009033 SGCD (ENSSHBG00005008987) ENSSHBG00005008958 MRPL22 (ENSSHBG00005008944) GEMIN5 (ENSSHBG00005008928) Cryptodira ANCESTRAL SPECIES 15 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT00960000189302 ENSGT00940000165772.a ENSGT00520000060726 ENSGT01090000260260 ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b Testudinoidea ANCESTRAL SPECIES 5 ENSGT00910000144291 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT00940000165772.a ENSGT00960000191752 ENSGT01090000260442.B ENSGT01030000235731.b.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b Testudinidae ANCESTRAL SPECIES 16 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT00940000165772.a ENSGT01090000263192 ENSGT01090000260442.A.a ENSGT01090000260260 ENSGT00960000191752 ENSGT01090000260442.B ENSGT01030000235731.b.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 ENSGT00390000000080.a.b Abingdon island giant tortoise MODERN SPECIES 2150 ENSCABG00000007312 ENSCABG00000007316 ENSCABG00000007318 ENSCABG00000007320 ENSCABG00000007323 ENSCABG00000007326 ENSCABG00000007328 ENSCABG00000007330 ENSCABG00000007331 ENSCABG00000007332 ENSCABG00000007334 UBLCP1 (ENSCABG00000007336) RNF145 (ENSCABG00000007339) EBF1 (ENSCABG00000007344) ##22 CLINT1 (ENSCABG00000007465) THG1L (ENSCABG00000007468) SOX30 (ENSCABG00000007469) ADAM19 (ENSCABG00000007470) ENSCABG00000007471 ENSCABG00000007472 CYFIP2 (ENSCABG00000007475) FNDC9 (ENSCABG00000007508) ENSCABG00000007510 ENSCABG00000007525 ENSCABG00000007527 MED7 (ENSCABG00000007528) ENSCABG00000007529 ENSCABG00000007530 ENSCABG00000007531 Goode s thornscrub tortoise MODERN SPECIES 22 KIAA1191 (ENSGEVG00005007802) ENSGEVG00005007820 THOC3 (ENSGEVG00005007918) ENSGEVG00005007955 HRH2 (ENSGEVG00005007988) ENSGEVG00005008001 ENSGEVG00005008028 ENSGEVG00005008094 ENSGEVG00005008196 ENSGEVG00005008224 ENSGEVG00005008253 ENSGEVG00005008281 ENSGEVG00005008321 UBLCP1 (ENSGEVG00005008342) RNF145 (ENSGEVG00005008361) EBF1 (ENSGEVG00005008405) ##22 CLINT1 (ENSGEVG00005008507) LSM11 (ENSGEVG00005008552) THG1L (ENSGEVG00005008604) SOX30 (ENSGEVG00005008624) ADAM19 (ENSGEVG00005008807) ENSGEVG00005010156 ENSGEVG00005010198 CYFIP2 (ENSGEVG00005010418) FNDC9 (ENSGEVG00005011224) ITK (ENSGEVG00005011244) MED7 (ENSGEVG00005011286) ENSGEVG00005011355 ENSGEVG00005011454 ENSGEVG00005011497 SGCD (ENSGEVG00005011549) Emydidae ANCESTRAL SPECIES 11 ENSGT00390000003426 ENSGT00940000160017 ENSGT00390000000537 ENSGT00940000153451.a.a.b ENSGT00940000158129 ENSGT00950000182938.b.b.a ENSGT00950000182938.b.a ENSGT00940000158761 ENSGT01060000249541 ENSGT00940000165772.a ENSGT00960000191752 ENSGT01090000260442.B ENSGT01030000235731.b.a ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000161609.o.a ENSGT00940000163509.b ENSGT00940000161609.p ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Three-toed box turtle MODERN SPECIES 306 NOP16 (ENSTMTG00000007227) ARL10 (ENSTMTG00000007219) SIMC1 (ENSTMTG00000007201) THOC3 (ENSTMTG00000007185) ENSTMTG00000007166 HRH2 (ENSTMTG00000007152) ENSTMTG00000007145 ENSTMTG00000007127 ENSTMTG00000007093 ENSTMTG00000007073 ENSTMTG00000007051 ENSTMTG00000007022 ENSTMTG00000007002 UBLCP1 (ENSTMTG00000006972) RNF145 (ENSTMTG00000006949) EBF1 (ENSTMTG00000006849) ##22 CLINT1 (ENSTMTG00000006816) THG1L (ENSTMTG00000006790) SOX30 (ENSTMTG00000006773) ADAM19 (ENSTMTG00000006761) NIPAL4 (ENSTMTG00000006746) ENSTMTG00000006730 FNDC9 (ENSTMTG00000006707) CYFIP2 (ENSTMTG00000005876) ITK (ENSTMTG00000005477) MED7 (ENSTMTG00000005445) ENSTMTG00000005433 ENSTMTG00000005425 TIMD4 (ENSTMTG00000005410) SGCD (ENSTMTG00000005371) MRPL22 (ENSTMTG00000005356) painted turtle MODERN SPECIES 733 ENSCPBG00000001194 ENSCPBG00000001208 ENSCPBG00000001220 ENSCPBG00000001246 ENSCPBG00000001278 ENSCPBG00000001334 ENSCPBG00000001344 ENSCPBG00000001362 UBLCP1 (ENSCPBG00000001379) RNF145 (ENSCPBG00000001410) EBF1 (ENSCPBG00000001442) ##22 CLINT1 (ENSCPBG00000001495) THG1L (ENSCPBG00000001551) SOX30 (ENSCPBG00000001569) ENSCPBG00000001580 ENSCPBG00000001605 NIPAL4 (ENSCPBG00000001617) CYFIP2 (ENSCPBG00000001647) FNDC9 (ENSCPBG00000001733) ITK (ENSCPBG00000001769) MED7 (ENSCPBG00000001955) ENSCPBG00000001960 ENSCPBG00000001971 ENSCPBG00000001982 SGCD (ENSCPBG00000002013) MRPL22 (ENSCPBG00000002068) Chinese turtle MODERN SPECIES 2223 UBLCP1 (ENSPSIG00000006151) RNF145 (ENSPSIG00000005875) EBF1 (ENSPSIG00000005604) ##22 CLINT1 (ENSPSIG00000005297) LSM11 (ENSPSIG00000005234) THG1L (ENSPSIG00000005072) SOX30 (ENSPSIG00000004756) ADAM19 (ENSPSIG00000004119) NIPAL4 (ENSPSIG00000004111) FNDC9 (ENSPSIG00000000198) CYFIP2 (ENSPSIG00000004082) ITK (ENSPSIG00000004038) MED7 (ENSPSIG00000000188) ENSPSIG00000000178 ENSPSIG00000004015 ENSPSIG00000003985 SGCD (ENSPSIG00000003964) MRPL22 (ENSPSIG00000003917) Mammalia ANCESTRAL SPECIES 30 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000159345 ENSGT00940000163509.b ENSGT00940000158509 Platypus MODERN SPECIES 84 GABRG2 (ENSOANG00000040970) GABRA1 (ENSOANG00000040890) GABRA6 (ENSOANG00000003609) GABRB2 (ENSOANG00000003608) ATP10B (ENSOANG00000003611) ENSOANG00000008417 SLU7 (ENSOANG00000012329) C1QTNF2 (ENSOANG00000012330) CCNJL (ENSOANG00000047350) PWWP2A (ENSOANG00000043388) TTC1 (ENSOANG00000012333) ADRA1B (ENSOANG00000012334) IL12B (ENSOANG00000012335) UBLCP1 (ENSOANG00000012336) RNF145 (ENSOANG00000012337) EBF1 (ENSOANG00000012338) ##22 CLINT1 (ENSOANG00000005072) LSM11 (ENSOANG00000005073) THG1L (ENSOANG00000005074) SOX30 (ENSOANG00000048847) ADAM19 (ENSOANG00000005077) CYFIP2 (ENSOANG00000005078) FNDC9 (ENSOANG00000038112) ITK (ENSOANG00000005082) MED7 (ENSOANG00000005192) ENSOANG00000021408 ENSOANG00000005086 ENSOANG00000005088 SGCD (ENSOANG00000005090) ENSOANG00000005091 GEMIN5 (ENSOANG00000005092) Theria ANCESTRAL SPECIES 18 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 Marsupialia ANCESTRAL SPECIES 9 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Marsupialia_b ANCESTRAL SPECIES 5 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Diprotodontia ANCESTRAL SPECIES 6 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 Wallaby MODERN SPECIES 7010 EBF1 (ENSMEUG00000001579) ##22 Diprotodontia_a ANCESTRAL SPECIES 7 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 ENSGT00620000088064 koala MODERN SPECIES 44 GABRA6 (ENSPCIG00000012029) ENSPCIG00000012028 GABRB2 (ENSPCIG00000012027) ATP10B (ENSPCIG00000018103) ENSPCIG00000018106 ENSPCIG00000018111 C1QTNF2 (ENSPCIG00000018218) CCNJL (ENSPCIG00000018219) FABP6 (ENSPCIG00000018220) PWWP2A (ENSPCIG00000018222) TTC1 (ENSPCIG00000018224) ADRA1B (ENSPCIG00000025630) IL12B (ENSPCIG00000013888) UBLCP1 (ENSPCIG00000013892) RNF145 (ENSPCIG00000013902) EBF1 (ENSPCIG00000013916) ##22 ENSPCIG00000009163 CLINT1 (ENSPCIG00000018474) LSM11 (ENSPCIG00000018473) THG1L (ENSPCIG00000018471) SOX30 (ENSPCIG00000018469) Common wonbat MODERN SPECIES 1087 GABRA1 (ENSVURG00010003690) GABRA6 (ENSVURG00010003836) GABRB2 (ENSVURG00010003864) ATP10B (ENSVURG00010003941) ENSVURG00010004009 SLU7 (ENSVURG00010004014) C1QTNF2 (ENSVURG00010004032) CCNJL (ENSVURG00010004040) FABP6 (ENSVURG00010004096) PWWP2A (ENSVURG00010004109) TTC1 (ENSVURG00010004135) ADRA1B (ENSVURG00010004186) IL12B (ENSVURG00010004208) UBLCP1 (ENSVURG00010004222) RNF145 (ENSVURG00010004262) EBF1 (ENSVURG00010004341) ##22 ENSVURG00010004541 CLINT1 (ENSVURG00010004606) ENSVURG00010004622 LSM11 (ENSVURG00010004625) THG1L (ENSVURG00010004636) ENSVURG00010004652 ADAM19 (ENSVURG00010004686) NIPAL4 (ENSVURG00010004707) CYFIP2 (ENSVURG00010004746) FNDC9 (ENSVURG00010004778) ITK (ENSVURG00010004784) MED7 (ENSVURG00010004800) ENSVURG00010004805 SGCD (ENSVURG00010004872) MRPL22 (ENSVURG00010004914) Tasmanian devil MODERN SPECIES 1 ENSSHAG00000025413 GABRB2 (ENSSHAG00000003958) ATP10B (ENSSHAG00000011397) ENSSHAG00000023953 ENSSHAG00000022623 SLU7 (ENSSHAG00000009841) C1QTNF2 (ENSSHAG00000031569) CCNJL (ENSSHAG00000009091) FABP6 (ENSSHAG00000008218) PWWP2A (ENSSHAG00000007717) TTC1 (ENSSHAG00000002270) ADRA1B (ENSSHAG00000006676) IL12B (ENSSHAG00000018821) UBLCP1 (ENSSHAG00000018812) RNF145 (ENSSHAG00000018754) EBF1 (ENSSHAG00000024375) ##22 CLINT1 (ENSSHAG00000017023) LSM11 (ENSSHAG00000016958) THG1L (ENSSHAG00000016908) SOX30 (ENSSHAG00000016758) ADAM19 (ENSSHAG00000016446) NIPAL4 (ENSSHAG00000031689) FNDC9 (ENSSHAG00000022510) CYFIP2 (ENSSHAG00000016029) ITK (ENSSHAG00000015627) MED7 (ENSSHAG00000026026) ENSSHAG00000022854 ENSSHAG00000031037 ENSSHAG00000014830 SGCD (ENSSHAG00000012936) ENSSHAG00000029557 Opossum MODERN SPECIES GABRA1 (ENSMODG00000007727) GABRA6 (ENSMODG00000007781) GABRB2 (ENSMODG00000007860) ATP10B (ENSMODG00000007907) ENSMODG00000007930 ENSMODG00000048898 SLU7 (ENSMODG00000007968) C1QTNF2 (ENSMODG00000007978) FABP6 (ENSMODG00000008000) PWWP2A (ENSMODG00000008004) TTC1 (ENSMODG00000008015) ADRA1B (ENSMODG00000008023) IL12B (ENSMODG00000008039) UBLCP1 (ENSMODG00000008063) RNF145 (ENSMODG00000008093) EBF1 (ENSMODG00000008198) ##22 ENSMODG00000008219 CLINT1 (ENSMODG00000008305) LSM11 (ENSMODG00000008314) THG1L (ENSMODG00000008328) SOX30 (ENSMODG00000008341) ENSMODG00000044152 ADAM19 (ENSMODG00000008386) NIPAL4 (ENSMODG00000008399) ENSMODG00000008409 FNDC9 (ENSMODG00000023717) CYFIP2 (ENSMODG00000008425) ITK (ENSMODG00000008495) MED7 (ENSMODG00000008431) ENSMODG00000027773 ENSMODG00000042386 Eutheria ANCESTRAL SPECIES 6 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Atlantogenata ANCESTRAL SPECIES ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Xenarthra ANCESTRAL SPECIES 238 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000165824 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B Sloth MODERN SPECIES 5160 EBF1 (ENSCHOG00000012303) ##22 Armadillo DUPLICATION Armadillo MODERN SPECIES 1043 IL12B (ENSDNOG00000002929) UBLCP1 (ENSDNOG00000013614) RNF145 (ENSDNOG00000032545) ENSDNOG00000036735 ##22 ENSDNOG00000035396 ##22 ENSDNOG00000044443 LSM11 (ENSDNOG00000003008) THG1L (ENSDNOG00000002215) SOX30 (ENSDNOG00000002213) ADAM19 (ENSDNOG00000002208) NIPAL4 (ENSDNOG00000039290) CYFIP2 (ENSDNOG00000018240) FNDC9 (ENSDNOG00000018246) ITK (ENSDNOG00000011205) ENSDNOG00000014887 ENSDNOG00000006247 ENSDNOG00000012298 Armadillo MODERN SPECIES 1043 IL12B (ENSDNOG00000002929) UBLCP1 (ENSDNOG00000013614) RNF145 (ENSDNOG00000032545) ENSDNOG00000036735 ##22 ENSDNOG00000035396 ##22 ENSDNOG00000044443 LSM11 (ENSDNOG00000003008) THG1L (ENSDNOG00000002215) SOX30 (ENSDNOG00000002213) ADAM19 (ENSDNOG00000002208) NIPAL4 (ENSDNOG00000039290) CYFIP2 (ENSDNOG00000018240) FNDC9 (ENSDNOG00000018246) ITK (ENSDNOG00000011205) ENSDNOG00000014887 ENSDNOG00000006247 ENSDNOG00000012298 Afrotheria ANCESTRAL SPECIES 7 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213.b ENSGT00940000157213.a ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063.c ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.q.b ENSGT00940000161609 ENSGT00940000158509 Tenrec MODERN SPECIES 5636 ENSETEG00000011714 EBF1 (ENSETEG00000011711) ##22 Afrotheria_a ANCESTRAL SPECIES 7 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213.b ENSGT00940000157213.a ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063.c ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.q.b ENSGT00940000161609 ENSGT00940000158509 Elephant MODERN SPECIES 2 GABRA6 (ENSLAFG00000016923) GABRB2 (ENSLAFG00000018272) ATP10B (ENSLAFG00000010994) ENSLAFG00000011135 SLU7 (ENSLAFG00000003725) C1QTNF2 (ENSLAFG00000002281) CCNJL (ENSLAFG00000020892) FABP6 (ENSLAFG00000025554) PWWP2A (ENSLAFG00000016182) ENSLAFG00000028861 ENSLAFG00000016176 ADRA1B (ENSLAFG00000016171) IL12B (ENSLAFG00000015755) UBLCP1 (ENSLAFG00000011908) RNF145 (ENSLAFG00000018609) EBF1 (ENSLAFG00000017522) ##22 CLINT1 (ENSLAFG00000004930) LSM11 (ENSLAFG00000004928) THG1L (ENSLAFG00000004926) SOX30 (ENSLAFG00000004922) ENSLAFG00000028268 NIPAL4 (ENSLAFG00000023012) FNDC9 (ENSLAFG00000002846) CYFIP2 (ENSLAFG00000002840) ITK (ENSLAFG00000003582) ENSLAFG00000014173 MED7 (ENSLAFG00000029023) HAVCR2 (ENSLAFG00000016886) ENSLAFG00000028629 ENSLAFG00000028843 ENSLAFG00000028205 Hyrax MODERN SPECIES 4759 EBF1 (ENSPCAG00000013495) ##22 Boreoeutheria ANCESTRAL SPECIES 9 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT01090000260046 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Euarchontoglires ANCESTRAL SPECIES 8 ENSGT00910000147255 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Euarchontoglires_A ANCESTRAL SPECIES 8 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT01090000260046 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Tree shrew MODERN SPECIES 3220 IL12B (ENSTBEG00000009333) ENSTBEG00000008983 RNF145 (ENSTBEG00000008590) EBF1 (ENSTBEG00000007800) ##22 Glires ANCESTRAL SPECIES 7 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Rodentia ANCESTRAL SPECIES 7 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Rodentia_B ANCESTRAL SPECIES 4 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Myomorpha ANCESTRAL SPECIES 28 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 63 Stmn1 (ENSJJAG00000023623) ##14 Pafah2 (ENSJJAG00000008153) Slc30a2 (ENSJJAG00000012135) Trim63 (ENSJJAG00000002973) Pdik1l (ENSJJAG00000008196) Zfp593 (ENSJJAG00000006095) Cep85 (ENSJJAG00000000739) Sh3bgrl3 (ENSJJAG00000023653) Fabp6 (ENSJJAG00000012423) Pwwp2a (ENSJJAG00000003162) Ttc1 (ENSJJAG00000002255) Adra1b (ENSJJAG00000001311) ENSJJAG00000000479 ENSJJAG00000004203 ENSJJAG00000010024 ENSJJAG00000000881 ##22 ENSJJAG00000003456 ##22 ENSJJAG00000012991 Lsm11 (ENSJJAG00000000505) Thg1l (ENSJJAG00000022909) ENSJJAG00000012218 Nipal4 (ENSJJAG00000005123) Fndc9 (ENSJJAG00000015621) Cyfip2 (ENSJJAG00000010781) Itk (ENSJJAG00000021816) Med7 (ENSJJAG00000004613) Sgcd (ENSJJAG00000001165) ENSJJAG00000023400 ENSJJAG00000004371 ENSJJAG00000023424 ENSJJAG00000021436 Lesser Egyptian jerboa MODERN SPECIES 63 Pafah2 (ENSJJAG00000008153) Slc30a2 (ENSJJAG00000012135) Trim63 (ENSJJAG00000002973) Pdik1l (ENSJJAG00000008196) Zfp593 (ENSJJAG00000006095) Cep85 (ENSJJAG00000000739) Sh3bgrl3 (ENSJJAG00000023653) Fabp6 (ENSJJAG00000012423) Pwwp2a (ENSJJAG00000003162) Ttc1 (ENSJJAG00000002255) Adra1b (ENSJJAG00000001311) ENSJJAG00000000479 ENSJJAG00000004203 ENSJJAG00000010024 ENSJJAG00000000881 ##22 ENSJJAG00000003456 ##22 ENSJJAG00000012991 Lsm11 (ENSJJAG00000000505) Thg1l (ENSJJAG00000022909) ENSJJAG00000012218 Nipal4 (ENSJJAG00000005123) Fndc9 (ENSJJAG00000015621) Cyfip2 (ENSJJAG00000010781) Itk (ENSJJAG00000021816) Med7 (ENSJJAG00000004613) Sgcd (ENSJJAG00000001165) ENSJJAG00000023400 ENSJJAG00000004371 ENSJJAG00000023424 ENSJJAG00000021436 ENSJJAG00000002404 Muroidea ANCESTRAL SPECIES 10 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Muroidea_A ANCESTRAL SPECIES 1 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l ENSGT00520000062120 ENSGT00940000159345.k.a Murinae ANCESTRAL SPECIES 7 ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l.c ENSGT00940000159345.l.d ENSGT00520000062120 Mus ANCESTRAL SPECIES 2 ENSGT00940000154245.A ENSGT00860000136074 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00860000135873 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l.c ENSGT00940000159345.l.d ENSGT00520000062120 ENSGT00940000159345.k.b Mus_A ANCESTRAL SPECIES 2 ENSGT00940000154245.A ENSGT00860000136074 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00860000135873 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l.c ENSGT00940000159345.l.d ENSGT00520000062120 ENSGT00940000159345.k.b Mus_B ANCESTRAL SPECIES 2 ENSGT00940000154245.A ENSGT00860000136074 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00860000135873 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l.c ENSGT00940000159345.l.d ENSGT00520000062120 ENSGT00940000159345.k.b Mouse MODERN SPECIES 2 Gabra1 (ENSMUSG00000010803) Gabra6 (ENSMUSG00000020428) Gabrb2 (ENSMUSG00000007653) Atp10b (ENSMUSG00000055415) Pttg1 (ENSMUSG00000020415) Slu7 (ENSMUSG00000020409) C1qtnf2 (ENSMUSG00000046491) Ccnjl (ENSMUSG00000044707) Fabp6 (ENSMUSG00000020405) Pwwp2a (ENSMUSG00000044950) Ttc1 (ENSMUSG00000041278) Adra1b (ENSMUSG00000050541) Il12b (ENSMUSG00000004296) Ublcp1 (ENSMUSG00000041231) Rnf145 (ENSMUSG00000019189) Ebf1 (ENSMUSG00000057098) ##22 Clint1 (ENSMUSG00000006169) Lsm11 (ENSMUSG00000044847) Thg1l (ENSMUSG00000011254) Sox30 (ENSMUSG00000040489) Gm12166 (ENSMUSG00000069899) Adam19 (ENSMUSG00000011256) Nipal4 (ENSMUSG00000020411) Cyfip2 (ENSMUSG00000020340) Fndc9 (ENSMUSG00000048721) Itk (ENSMUSG00000020395) Garin3 (ENSMUSG00000020401) Med7 (ENSMUSG00000020397) Havcr2 (ENSMUSG00000020399) Gm12169 (ENSMUSG00000078924) BC053393 (ENSMUSG00000046974) Mus_C ANCESTRAL SPECIES 3 ENSGT00940000154245.A ENSGT00860000136074 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00860000135873 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l.c ENSGT00940000159345.l.d ENSGT00520000062120 ENSGT00940000159345.k.b spretus MODERN SPECIES 2 Gabrb2 (MGP_SPRETEiJ_G0017059) MGP_SPRETEiJ_G0017060 Atp10b (MGP_SPRETEiJ_G0017061) Pttg1 (MGP_SPRETEiJ_G0017062) Slu7 (MGP_SPRETEiJ_G0017063) C1qtnf2 (MGP_SPRETEiJ_G0017064) Ccnjl (MGP_SPRETEiJ_G0017065) MGP_SPRETEiJ_G0017066 Fabp6 (MGP_SPRETEiJ_G0017067) Pwwp2a (MGP_SPRETEiJ_G0017068) Ttc1 (MGP_SPRETEiJ_G0017069) Adra1b (MGP_SPRETEiJ_G0017070) Il12b (MGP_SPRETEiJ_G0017071) Ublcp1 (MGP_SPRETEiJ_G0017072) Rnf145 (MGP_SPRETEiJ_G0017073) Ebf1 (MGP_SPRETEiJ_G0017074) ##22 Clint1 (MGP_SPRETEiJ_G0017075) Lsm11 (MGP_SPRETEiJ_G0017076) Thg1l (MGP_SPRETEiJ_G0017077) Sox30 (MGP_SPRETEiJ_G0017078) Adam19 (MGP_SPRETEiJ_G0017079) Nipal4 (MGP_SPRETEiJ_G0017080) Cyfip2 (MGP_SPRETEiJ_G0017081) Fndc9 (MGP_SPRETEiJ_G0017082) Itk (MGP_SPRETEiJ_G0017083) Garin3 (MGP_SPRETEiJ_G0017084) Med7 (MGP_SPRETEiJ_G0017085) Havcr2 (MGP_SPRETEiJ_G0017086) Gm12169 (MGP_SPRETEiJ_G0017087) BC053393 (MGP_SPRETEiJ_G0017088) Dppa1 (MGP_SPRETEiJ_G0017089) Steppe mouse MODERN SPECIES 3293 Gabra6 (ENSMSIG00000023032) Gabrb2 (ENSMSIG00000023075) Atp10b (ENSMSIG00000023119) Pttg1 (ENSMSIG00000023171) Slu7 (ENSMSIG00000023217) C1qtnf2 (ENSMSIG00000023279) Ccnjl (ENSMSIG00000023300) Fabp6 (ENSMSIG00000023313) ENSMSIG00000023325 Ttc1 (ENSMSIG00000023339) Adra1b (ENSMSIG00000023363) Il12b (ENSMSIG00000023383) Ublcp1 (ENSMSIG00000023412) ENSMSIG00000023438 Rnf145 (ENSMSIG00000023450) Ebf1 (ENSMSIG00000023469) ##22 Ryukyu mouse MODERN SPECIES 2 Gabrb2 (MGP_CAROLIEiJ_G0016218) MGP_CAROLIEiJ_G0016219 Atp10b (MGP_CAROLIEiJ_G0016220) Pttg1 (MGP_CAROLIEiJ_G0016221) Slu7 (MGP_CAROLIEiJ_G0016222) C1qtnf2 (MGP_CAROLIEiJ_G0016223) Ccnjl (MGP_CAROLIEiJ_G0016224) MGP_CAROLIEiJ_G0016225 Fabp6 (MGP_CAROLIEiJ_G0016226) Pwwp2a (MGP_CAROLIEiJ_G0016227) Ttc1 (MGP_CAROLIEiJ_G0016228) Adra1b (MGP_CAROLIEiJ_G0016229) Il12b (MGP_CAROLIEiJ_G0016230) Ublcp1 (MGP_CAROLIEiJ_G0016231) Rnf145 (MGP_CAROLIEiJ_G0016232) Ebf1 (MGP_CAROLIEiJ_G0016233) ##22 Clint1 (MGP_CAROLIEiJ_G0016234) Lsm11 (MGP_CAROLIEiJ_G0016235) Thg1l (MGP_CAROLIEiJ_G0016236) Sox30 (MGP_CAROLIEiJ_G0016237) Adam19 (MGP_CAROLIEiJ_G0016238) Nipal4 (MGP_CAROLIEiJ_G0016239) Cyfip2 (MGP_CAROLIEiJ_G0016240) Fndc9 (MGP_CAROLIEiJ_G0016241) Itk (MGP_CAROLIEiJ_G0016242) Garin3 (MGP_CAROLIEiJ_G0016243) Med7 (MGP_CAROLIEiJ_G0016244) Havcr2 (MGP_CAROLIEiJ_G0016245) Gm12169 (MGP_CAROLIEiJ_G0016246) BC053393 (MGP_CAROLIEiJ_G0016247) Dppa1 (MGP_CAROLIEiJ_G0016248) Shrew mouse MODERN SPECIES 5 Gabrb2 (MGP_PahariEiJ_G0017354) MGP_PahariEiJ_G0017355 Atp10b (MGP_PahariEiJ_G0017356) Pttg1 (MGP_PahariEiJ_G0017357) Slu7 (MGP_PahariEiJ_G0017358) C1qtnf2 (MGP_PahariEiJ_G0017359) Ccnjl (MGP_PahariEiJ_G0017360) MGP_PahariEiJ_G0017361 Fabp6 (MGP_PahariEiJ_G0017362) Pwwp2a (MGP_PahariEiJ_G0017363) Ttc1 (MGP_PahariEiJ_G0017364) Adra1b (MGP_PahariEiJ_G0017365) Il12b (MGP_PahariEiJ_G0017366) Ublcp1 (MGP_PahariEiJ_G0017367) MGP_PahariEiJ_G0017368 Ebf1 (MGP_PahariEiJ_G0017369) ##22 Clint1 (MGP_PahariEiJ_G0017370) Lsm11 (MGP_PahariEiJ_G0017371) Thg1l (MGP_PahariEiJ_G0017372) Sox30 (MGP_PahariEiJ_G0017373) Adam19 (MGP_PahariEiJ_G0017374) Nipal4 (MGP_PahariEiJ_G0017375) Cyfip2 (MGP_PahariEiJ_G0017376) Fndc9 (MGP_PahariEiJ_G0017377) Itk (MGP_PahariEiJ_G0017378) Garin3 (MGP_PahariEiJ_G0017379) Med7 (MGP_PahariEiJ_G0017380) Havcr2 (MGP_PahariEiJ_G0017381) Gm12169 (MGP_PahariEiJ_G0017382) BC053393 (MGP_PahariEiJ_G0017383) MGP_PahariEiJ_G0017384 Rat MODERN SPECIES 1 Gabrb2 (ENSRNOG00000003680) Atp10b (ENSRNOG00000003781) Pttg1 (ENSRNOG00000003802) Slu7 (ENSRNOG00000003822) C1qtnf2 (ENSRNOG00000003870) Ccnjl (ENSRNOG00000003893) Fabp6 (ENSRNOG00000003902) Pwwp2a (ENSRNOG00000003936) ENSRNOG00000064611 Ttc1 (ENSRNOG00000003980) Adra1b (ENSRNOG00000060087) AABR07029470.2 (ENSRNOG00000058024) Il12b (ENSRNOG00000004380) Ublcp1 (ENSRNOG00000004477) Rnf145 (ENSRNOG00000004602) Ebf1 (ENSRNOG00000028845) ##22 Clint1 (ENSRNOG00000005406) Lsm11 (ENSRNOG00000005450) Thg1l (ENSRNOG00000005539) Sox30 (ENSRNOG00000006098) Adam19 (ENSRNOG00000042980) Nipal4 (ENSRNOG00000006255) Cyfip2 (ENSRNOG00000006557) Fndc9 (ENSRNOG00000006549) Itk (ENSRNOG00000006860) Garin3 (ENSRNOG00000021425) Med7 (ENSRNOG00000007053) Havcr2 (ENSRNOG00000031443) LOC100359777 (ENSRNOG00000043422) LOC689968 (ENSRNOG00000042265) Dppa1 (ENSRNOG00000043293) Cricetidae ANCESTRAL SPECIES ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l ENSGT00520000062120 ENSGT00940000159345.k.a Cricetinae ANCESTRAL SPECIES ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l ENSGT00520000062120 ENSGT00940000159345.k.a Golden Hamster MODERN SPECIES 647 Gabra1 (ENSMAUG00000018769) Gabra6 (ENSMAUG00000020508) Gabrb2 (ENSMAUG00000012444) Atp10b (ENSMAUG00000020206) Pttg1 (ENSMAUG00000020009) Slu7 (ENSMAUG00000016739) C1qtnf2 (ENSMAUG00000008815) Ccnjl (ENSMAUG00000007894) Fabp6 (ENSMAUG00000000683) ENSMAUG00000011066 Ttc1 (ENSMAUG00000016834) Adra1b (ENSMAUG00000013092) Il12b (ENSMAUG00000011200) Ublcp1 (ENSMAUG00000016310) Rnf145 (ENSMAUG00000019764) Ebf1 (ENSMAUG00000014249) ##22 Clint1 (ENSMAUG00000018312) Lsm11 (ENSMAUG00000016249) Thg1l (ENSMAUG00000012121) Sox30 (ENSMAUG00000016375) ENSMAUG00000001628 Nipal4 (ENSMAUG00000007354) Fndc9 (ENSMAUG00000002327) Cyfip2 (ENSMAUG00000011538) Itk (ENSMAUG00000018699) Garin3 (ENSMAUG00000007741) Med7 (ENSMAUG00000014731) Havcr2 (ENSMAUG00000000929) ENSMAUG00000007758 Dppa1 (ENSMAUG00000014594) Timd4 (ENSMAUG00000003000) Chinese hamster chok1gshd MODERN SPECIES 229 Gabra1 (ENSCGRG00001023401) Gabra6 (ENSCGRG00001015664) Gabrb2 (ENSCGRG00001006669) Atp10b (ENSCGRG00001021960) Pttg1 (ENSCGRG00001001415) Slu7 (ENSCGRG00001016416) C1qtnf2 (ENSCGRG00001023451) Ccnjl (ENSCGRG00001024069) Fabp6 (ENSCGRG00001016322) Pwwp2a (ENSCGRG00001008184) ENSCGRG00001021540 Adra1b (ENSCGRG00001011857) Il12b (ENSCGRG00001001156) Ublcp1 (ENSCGRG00001019223) Rnf145 (ENSCGRG00001023959) Ebf1 (ENSCGRG00001003735) ##22 Clint1 (ENSCGRG00001014730) Lsm11 (ENSCGRG00001014281) Thg1l (ENSCGRG00001019597) Sox30 (ENSCGRG00001021269) ENSCGRG00001021524 Nipal4 (ENSCGRG00001000876) Cyfip2 (ENSCGRG00001014640) Fndc9 (ENSCGRG00001007038) Itk (ENSCGRG00001015051) Garin3 (ENSCGRG00001015508) Med7 (ENSCGRG00001003660) Havcr2 (ENSCGRG00001019621) ENSCGRG00001019450 Havcr1 (ENSCGRG00001022176) Timd4 (ENSCGRG00001009908) Cricetidae_B ANCESTRAL SPECIES ENSGT00940000159136 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.l ENSGT00940000161609 ENSGT00940000158509 Northern American deer mouse MODERN SPECIES 21 Atp10b (ENSPEMG00000014226) ENSPEMG00000007013 Slu7 (ENSPEMG00000016646) C1qtnf2 (ENSPEMG00000008301) Ccnjl (ENSPEMG00000007234) Fabp6 (ENSPEMG00000004485) Pwwp2a (ENSPEMG00000000774) Ttc1 (ENSPEMG00000018843) Adra1b (ENSPEMG00000018698) ENSPEMG00000012981 ENSPEMG00000018217 Il12b (ENSPEMG00000015420) Ublcp1 (ENSPEMG00000014160) ENSPEMG00000028711 Rnf145 (ENSPEMG00000016589) Ebf1 (ENSPEMG00000022652) ##22 Clint1 (ENSPEMG00000022779) Lsm11 (ENSPEMG00000028614) Thg1l (ENSPEMG00000022707) Sox30 (ENSPEMG00000000554) Adam19 (ENSPEMG00000011893) Nipal4 (ENSPEMG00000030993) Cyfip2 (ENSPEMG00000013244) Fndc9 (ENSPEMG00000030039) Itk (ENSPEMG00000014168) Garin3 (ENSPEMG00000007819) Med7 (ENSPEMG00000019778) Havcr2 (ENSPEMG00000019286) ENSPEMG00000029530 ENSPEMG00000019712 ENSPEMG00000028909 Prairie vole MODERN SPECIES 113 Gabra1 (ENSMOCG00000004272) Gabra6 (ENSMOCG00000005267) Gabrb2 (ENSMOCG00000000191) Atp10b (ENSMOCG00000012356) Pttg1 (ENSMOCG00000020845) Slu7 (ENSMOCG00000012963) C1qtnf2 (ENSMOCG00000000115) Ccnjl (ENSMOCG00000014118) Fabp6 (ENSMOCG00000019592) Pwwp2a (ENSMOCG00000021497) Ttc1 (ENSMOCG00000012530) Adra1b (ENSMOCG00000008511) Il12b (ENSMOCG00000012269) Ublcp1 (ENSMOCG00000009575) Rnf145 (ENSMOCG00000000765) Ebf1 (ENSMOCG00000003946) ##22 ENSMOCG00000022703 Clint1 (ENSMOCG00000011170) Lsm11 (ENSMOCG00000008854) Thg1l (ENSMOCG00000005041) ENSMOCG00000022574 Sox30 (ENSMOCG00000014608) ENSMOCG00000013055 Nipal4 (ENSMOCG00000009893) Upper Galilee mountains blind mole rat MODERN SPECIES 1775 Gabra6 (ENSNGAG00000012763) Gabrb2 (ENSNGAG00000001447) Atp10b (ENSNGAG00000019191) Pttg1 (ENSNGAG00000017288) Slu7 (ENSNGAG00000015167) ENSNGAG00000012428 C1qtnf2 (ENSNGAG00000006340) Ccnjl (ENSNGAG00000018894) Fabp6 (ENSNGAG00000016034) Pwwp2a (ENSNGAG00000012269) Ttc1 (ENSNGAG00000009948) Adra1b (ENSNGAG00000008556) Il12b (ENSNGAG00000015362) Ublcp1 (ENSNGAG00000013735) Rnf145 (ENSNGAG00000012175) Ebf1 (ENSNGAG00000010856) ##22 Kangaroo rat MODERN SPECIES 582 Il12b (ENSDORG00000007934) Ublcp1 (ENSDORG00000003901) ENSDORG00000008056 Ebf1 (ENSDORG00000011797) ##22 ENSDORG00000026499 Clint1 (ENSDORG00000007567) Rodentia_A ANCESTRAL SPECIES 7 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Hystricomorpha ANCESTRAL SPECIES 30 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 Hystricomorpha_a ANCESTRAL SPECIES 28 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 Hystricomorpha_b ANCESTRAL SPECIES 19 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 Degu DUPLICATION Degu MODERN SPECIES 70 ENSODEG00000010548 ATP10B (ENSODEG00000010055) ENSODEG00000010237 ENSODEG00000010998 FAM200C (ENSODEG00000019938) C1QTNF2 (ENSODEG00000010469) CCNJL (ENSODEG00000011156) ENSODEG00000012262 TTC1 (ENSODEG00000010814) ADRA1B (ENSODEG00000010364) IL12B (ENSODEG00000011137) ENSODEG00000011564 ENSODEG00000010153 ENSODEG00000009967 ENSODEG00000010777 ##22 ENSODEG00000009382 ##22 ENSODEG00000010558 LSM11 (ENSODEG00000009738) THG1L (ENSODEG00000009719) SOX30 (ENSODEG00000009453) ADAM19 (ENSODEG00000009808) NIPAL4 (ENSODEG00000009499) ENSODEG00000009352 FNDC9 (ENSODEG00000019664) CYFIP2 (ENSODEG00000009223) ITK (ENSODEG00000012007) GARIN3 (ENSODEG00000014426) ENSODEG00000020034 HAVCR2 (ENSODEG00000011256) ENSODEG00000013454 SGCD (ENSODEG00000011784) Degu MODERN SPECIES 70 ENSODEG00000020236 ENSODEG00000010548 ATP10B (ENSODEG00000010055) ENSODEG00000010237 ENSODEG00000010998 FAM200C (ENSODEG00000019938) C1QTNF2 (ENSODEG00000010469) CCNJL (ENSODEG00000011156) ENSODEG00000012262 TTC1 (ENSODEG00000010814) ADRA1B (ENSODEG00000010364) IL12B (ENSODEG00000011137) ENSODEG00000011564 ENSODEG00000010153 ENSODEG00000009967 ENSODEG00000010777 ##22 ENSODEG00000009382 ##22 ENSODEG00000010558 LSM11 (ENSODEG00000009738) THG1L (ENSODEG00000009719) SOX30 (ENSODEG00000009453) ADAM19 (ENSODEG00000009808) NIPAL4 (ENSODEG00000009499) ENSODEG00000009352 FNDC9 (ENSODEG00000019664) CYFIP2 (ENSODEG00000009223) ITK (ENSODEG00000012007) GARIN3 (ENSODEG00000014426) ENSODEG00000020034 HAVCR2 (ENSODEG00000011256) ENSODEG00000013454 Long-tailed chinchilla MODERN SPECIES 115 GABRA6 (ENSCLAG00000012472) GABRB2 (ENSCLAG00000012890) ATP10B (ENSCLAG00000014630) ENSCLAG00000014055 SLU7 (ENSCLAG00000011915) FAM200C (ENSCLAG00000017741) C1QTNF2 (ENSCLAG00000015504) CCNJL (ENSCLAG00000013768) FABP6 (ENSCLAG00000012776) PWWP2A (ENSCLAG00000012281) TTC1 (ENSCLAG00000011604) ADRA1B (ENSCLAG00000013326) IL12B (ENSCLAG00000012311) UBLCP1 (ENSCLAG00000015579) RNF145 (ENSCLAG00000014266) EBF1 (ENSCLAG00000015983) ##22 CLINT1 (ENSCLAG00000013537) LSM11 (ENSCLAG00000017067) THG1L (ENSCLAG00000013903) SOX30 (ENSCLAG00000011694) ADAM19 (ENSCLAG00000012647) NIPAL4 (ENSCLAG00000014701) FNDC9 (ENSCLAG00000014381) CYFIP2 (ENSCLAG00000011702) ITK (ENSCLAG00000012785) GARIN3 (ENSCLAG00000014348) MED7 (ENSCLAG00000016147) HAVCR2 (ENSCLAG00000016115) SGCD (ENSCLAG00000014749) MRPL22 (ENSCLAG00000011777) GEMIN5 (ENSCLAG00000011942) Guinea pig MODERN SPECIES 17 GABRA6 (ENSCPOG00000009693) GABRB2 (ENSCPOG00000015215) ATP10B (ENSCPOG00000015077) ENSCPOG00000011971 SLU7 (ENSCPOG00000004484) FAM200C (ENSCPOG00000040506) C1QTNF2 (ENSCPOG00000002753) CCNJL (ENSCPOG00000034225) FABP6 (ENSCPOG00000025902) PWWP2A (ENSCPOG00000004130) TTC1 (ENSCPOG00000004128) ADRA1B (ENSCPOG00000019316) IL12B (ENSCPOG00000001622) UBLCP1 (ENSCPOG00000001621) RNF145 (ENSCPOG00000008166) EBF1 (ENSCPOG00000026184) ##22 CLINT1 (ENSCPOG00000000908) LSM11 (ENSCPOG00000000906) THG1L (ENSCPOG00000037046) SOX30 (ENSCPOG00000000397) ADAM19 (ENSCPOG00000007717) NIPAL4 (ENSCPOG00000007712) FNDC9 (ENSCPOG00000023471) CYFIP2 (ENSCPOG00000008377) ITK (ENSCPOG00000010299) GARIN3 (ENSCPOG00000030262) MED7 (ENSCPOG00000031038) ENSCPOG00000040495 ENSCPOG00000036932 ENSCPOG00000005891 SGCD (ENSCPOG00000003738) Naked mole-rat female MODERN SPECIES 23 ENSHGLG00000034285 ENSHGLG00000005435 ENSHGLG00000038625 ENSHGLG00000008073 SLU7 (ENSHGLG00000009442) FAM200C (ENSHGLG00000036354) C1QTNF2 (ENSHGLG00000046801) CCNJL (ENSHGLG00000041358) ENSHGLG00000009227 PWWP2A (ENSHGLG00000010411) ENSHGLG00000015069 ADRA1B (ENSHGLG00000015871) IL12B (ENSHGLG00000013907) UBLCP1 (ENSHGLG00000042837) RNF145 (ENSHGLG00000018986) EBF1 (ENSHGLG00000015515) ##22 ENSHGLG00000044777 ENSHGLG00000039765 CLINT1 (ENSHGLG00000048062) LSM11 (ENSHGLG00000042054) THG1L (ENSHGLG00000032403) SOX30 (ENSHGLG00000009847) ADAM19 (ENSHGLG00000015559) NIPAL4 (ENSHGLG00000015680) FNDC9 (ENSHGLG00000035156) CYFIP2 (ENSHGLG00000013823) ITK (ENSHGLG00000018493) GARIN3 (ENSHGLG00000016204) ENSHGLG00000021195 ENSHGLG00000014147 ENSHGLG00000046979 Sciuridae ANCESTRAL SPECIES 33 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.x ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650.j ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 Marmotini ANCESTRAL SPECIES 38 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.x.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650.j ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000163365.a ENSGT00940000158509 Marmotini_b ANCESTRAL SPECIES 96 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.x.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650.j ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000163365.a ENSGT00940000158509 Squirrel DUPLICATION Squirrel MODERN SPECIES 115 GABRA6 (ENSSTOG00000024430) GABRB2 (ENSSTOG00000003453) ATP10B (ENSSTOG00000015071) SLU7 (ENSSTOG00000015057) FAM200C (ENSSTOG00000015054) C1QTNF2 (ENSSTOG00000005319) CCNJL (ENSSTOG00000020277) FABP6 (ENSSTOG00000002847) ENSSTOG00000021953 TTC1 (ENSSTOG00000024913) ADRA1B (ENSSTOG00000026778) IL12B (ENSSTOG00000005006) UBLCP1 (ENSSTOG00000000854) RNF145 (ENSSTOG00000009671) ENSSTOG00000034104 ##22 ENSSTOG00000011505 ##22 ENSSTOG00000028447 CLINT1 (ENSSTOG00000014253) SOX30 (ENSSTOG00000014216) THG1L (ENSSTOG00000014243) ENSSTOG00000020480 NIPAL4 (ENSSTOG00000001828) CYFIP2 (ENSSTOG00000009237) FNDC9 (ENSSTOG00000029017) ITK (ENSSTOG00000009223) MED7 (ENSSTOG00000009218) ENSSTOG00000026317 SGCD (ENSSTOG00000004356) MRPL22 (ENSSTOG00000005822) GEMIN5 (ENSSTOG00000005759) ENSSTOG00000005745 Squirrel MODERN SPECIES 115 GABRA1 (ENSSTOG00000023032) GABRA6 (ENSSTOG00000024430) GABRB2 (ENSSTOG00000003453) ATP10B (ENSSTOG00000015071) SLU7 (ENSSTOG00000015057) FAM200C (ENSSTOG00000015054) C1QTNF2 (ENSSTOG00000005319) CCNJL (ENSSTOG00000020277) FABP6 (ENSSTOG00000002847) ENSSTOG00000021953 TTC1 (ENSSTOG00000024913) ADRA1B (ENSSTOG00000026778) IL12B (ENSSTOG00000005006) UBLCP1 (ENSSTOG00000000854) RNF145 (ENSSTOG00000009671) ENSSTOG00000034104 ##22 ENSSTOG00000011505 ##22 ENSSTOG00000028447 CLINT1 (ENSSTOG00000014253) SOX30 (ENSSTOG00000014216) THG1L (ENSSTOG00000014243) ENSSTOG00000020480 NIPAL4 (ENSSTOG00000001828) CYFIP2 (ENSSTOG00000009237) FNDC9 (ENSSTOG00000029017) ITK (ENSSTOG00000009223) MED7 (ENSSTOG00000009218) ENSSTOG00000026317 SGCD (ENSSTOG00000004356) MRPL22 (ENSSTOG00000005822) GEMIN5 (ENSSTOG00000005759) Arctic ground squirrel MODERN SPECIES 57 EBF1 (ENSUPAG00010016626) ##22 CLINT1 (ENSUPAG00010016690) LSM11 (ENSUPAG00010016757) THG1L (ENSUPAG00010016766) SOX30 (ENSUPAG00010016772) ENSUPAG00010016784 NIPAL4 (ENSUPAG00010016803) CYFIP2 (ENSUPAG00010016820) FNDC9 (ENSUPAG00010016907) ITK (ENSUPAG00010016912) GARIN3 (ENSUPAG00010016991) MED7 (ENSUPAG00010017002) HAVCR2 (ENSUPAG00010017006) ENSUPAG00010017019 TIMD4 (ENSUPAG00010017040) ENSUPAG00010017045 Alpin marmot MODERN SPECIES 31 GABRA1 (ENSMMMG00000012690) GABRA6 (ENSMMMG00000012710) GABRB2 (ENSMMMG00000012737) ATP10B (ENSMMMG00000012800) ENSMMMG00000012834 ENSMMMG00000012841 C1QTNF2 (ENSMMMG00000012860) CCNJL (ENSMMMG00000012864) FABP6 (ENSMMMG00000012902) PWWP2A (ENSMMMG00000012906) TTC1 (ENSMMMG00000012911) ADRA1B (ENSMMMG00000012931) IL12B (ENSMMMG00000012950) ENSMMMG00000012967 RNF145 (ENSMMMG00000012987) EBF1 (ENSMMMG00000013034) ##22 CLINT1 (ENSMMMG00000013122) THG1L (ENSMMMG00000013157) ENSMMMG00000013174 NIPAL4 (ENSMMMG00000013210) CYFIP2 (ENSMMMG00000013228) FNDC9 (ENSMMMG00000013327) ITK (ENSMMMG00000013337) GARIN3 (ENSMMMG00000013418) MED7 (ENSMMMG00000013429) HAVCR2 (ENSMMMG00000013436) ENSMMMG00000013465 ENSMMMG00000013477 ENSMMMG00000013485 ENSMMMG00000013491 SGCD (ENSMMMG00000013502) Eurasian red squirrel MODERN SPECIES 15 GABRA6 (ENSSVLG00005019650) GABRB2 (ENSSVLG00005019857) ATP10B (ENSSVLG00005020304) ENSSVLG00005020660 SLU7 (ENSSVLG00005020756) FAM200C (ENSSVLG00005020786) C1QTNF2 (ENSSVLG00005020795) CCNJL (ENSSVLG00005020821) FABP6 (ENSSVLG00005020859) PWWP2A (ENSSVLG00005020908) TTC1 (ENSSVLG00005020964) ADRA1B (ENSSVLG00005021005) IL12B (ENSSVLG00005021038) UBLCP1 (ENSSVLG00005021106) RNF145 (ENSSVLG00005021231) EBF1 (ENSSVLG00005021429) ##22 CLINT1 (ENSSVLG00005021801) ENSSVLG00005022019 LSM11 (ENSSVLG00005022056) THG1L (ENSSVLG00005022105) SOX30 (ENSSVLG00005022157) ENSSVLG00005022280 NIPAL4 (ENSSVLG00005022324) CYFIP2 (ENSSVLG00005011247) FNDC9 (ENSSVLG00005013019) ITK (ENSSVLG00005013116) GARIN3 (ENSSVLG00005013187) ENSSVLG00005013296 HAVCR2 (ENSSVLG00005013460) ENSSVLG00005013680 ENSSVLG00005013743 Lagomorpha ANCESTRAL SPECIES 3 ENSGT00940000159024 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Rabbit MODERN SPECIES 14 ENSOCUG00000037038 ENSOCUG00000014877 SLU7 (ENSOCUG00000011743) FAM200C (ENSOCUG00000033946) C1QTNF2 (ENSOCUG00000011735) CCNJL (ENSOCUG00000005439) FABP6 (ENSOCUG00000005435) PWWP2A (ENSOCUG00000005731) ENSOCUG00000036551 TTC1 (ENSOCUG00000005724) ADRA1B (ENSOCUG00000005721) ENSOCUG00000036332 IL12B (ENSOCUG00000016322) UBLCP1 (ENSOCUG00000002224) RNF145 (ENSOCUG00000009000) EBF1 (ENSOCUG00000008985) ##22 ENSOCUG00000016848 CLINT1 (ENSOCUG00000014232) LSM11 (ENSOCUG00000011672) THG1L (ENSOCUG00000001053) ADAM19 (ENSOCUG00000001235) NIPAL4 (ENSOCUG00000001234) FNDC9 (ENSOCUG00000025063) CYFIP2 (ENSOCUG00000011780) ITK (ENSOCUG00000002369) FAM71B (ENSOCUG00000002365) ENSOCUG00000000575 ENSOCUG00000024483 TIMD4 (ENSOCUG00000011915) SGCD (ENSOCUG00000002000) ENSOCUG00000024368 Pika MODERN SPECIES 2871 ENSOPRG00000000124 EBF1 (ENSOPRG00000000119) ##22 Primates ANCESTRAL SPECIES 8 ENSGT00910000147255 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Strepsirrhini ANCESTRAL SPECIES 5 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Lemuriformes ANCESTRAL SPECIES 21 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Mouse lemur MODERN SPECIES 15 GABRB2 (ENSMICG00000015110) ATP10B (ENSMICG00000006366) ENSMICG00000006363 SLU7 (ENSMICG00000031781) FAM200C (ENSMICG00000006362) C1QTNF2 (ENSMICG00000036878) CCNJL (ENSMICG00000044518) FABP6 (ENSMICG00000003251) PWWP2A (ENSMICG00000003248) TTC1 (ENSMICG00000003241) ADRA1B (ENSMICG00000043682) IL12B (ENSMICG00000010066) UBLCP1 (ENSMICG00000047506) ENSMICG00000047569 RNF145 (ENSMICG00000010048) EBF1 (ENSMICG00000010036) ##22 CLINT1 (ENSMICG00000001037) LSM11 (ENSMICG00000048032) THG1L (ENSMICG00000038734) SOX30 (ENSMICG00000001020) ADAM19 (ENSMICG00000001011) NIPAL4 (ENSMICG00000001010) CYFIP2 (ENSMICG00000004742) ITK (ENSMICG00000027422) GARIN3 (ENSMICG00000044215) MED7 (ENSMICG00000002539) HAVCR2 (ENSMICG00000001001) ENSMICG00000044152 TIMD4 (ENSMICG00000000994) SGCD (ENSMICG00000003017) ENSMICG00000034516 Lemuriformes_a ANCESTRAL SPECIES 102 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Coquerels sifaka MODERN SPECIES 320 GABRA1 (ENSPCOG00000021278) GABRB2 (ENSPCOG00000023104) ATP10B (ENSPCOG00000028296) ENSPCOG00000026953 SLU7 (ENSPCOG00000016138) FAM200C (ENSPCOG00000025679) C1QTNF2 (ENSPCOG00000017409) CCNJL (ENSPCOG00000017412) FABP6 (ENSPCOG00000028006) PWWP2A (ENSPCOG00000018502) TTC1 (ENSPCOG00000023770) ADRA1B (ENSPCOG00000016962) IL12B (ENSPCOG00000017957) UBLCP1 (ENSPCOG00000015926) RNF145 (ENSPCOG00000020812) EBF1 (ENSPCOG00000018938) ##22 Greater bamboo lemur MODERN SPECIES 132 GABRA1 (ENSPSMG00000005443) GABRA6 (ENSPSMG00000005527) GABRB2 (ENSPSMG00000005588) ATP10B (ENSPSMG00000005850) ENSPSMG00000005873 SLU7 (ENSPSMG00000005902) FAM200C (ENSPSMG00000005938) C1QTNF2 (ENSPSMG00000005948) CCNJL (ENSPSMG00000005972) PWWP2A (ENSPSMG00000006002) TTC1 (ENSPSMG00000006011) ADRA1B (ENSPSMG00000006018) IL12B (ENSPSMG00000006026) UBLCP1 (ENSPSMG00000006043) RNF145 (ENSPSMG00000006074) EBF1 (ENSPSMG00000006123) ##22 ENSPSMG00000006144 ENSPSMG00000006147 CLINT1 (ENSPSMG00000006177) LSM11 (ENSPSMG00000006204) THG1L (ENSPSMG00000006213) SOX30 (ENSPSMG00000006219) ADAM19 (ENSPSMG00000006256) NIPAL4 (ENSPSMG00000006264) CYFIP2 (ENSPSMG00000006690) FNDC9 (ENSPSMG00000007141) ITK (ENSPSMG00000007151) GARIN3 (ENSPSMG00000007162) MED7 (ENSPSMG00000007175) HAVCR2 (ENSPSMG00000007187) ENSPSMG00000007195 Bushbaby MODERN SPECIES 118 GABRB2 (ENSOGAG00000029275) ATP10B (ENSOGAG00000012969) ENSOGAG00000012307 SLU7 (ENSOGAG00000012301) FAM200C (ENSOGAG00000012300) C1QTNF2 (ENSOGAG00000012298) CCNJL (ENSOGAG00000012297) FABP6 (ENSOGAG00000032635) ENSOGAG00000009944 PWWP2A (ENSOGAG00000024953) TTC1 (ENSOGAG00000016342) ADRA1B (ENSOGAG00000032072) IL12B (ENSOGAG00000014011) UBLCP1 (ENSOGAG00000014005) RNF145 (ENSOGAG00000014001) EBF1 (ENSOGAG00000013992) ##22 CLINT1 (ENSOGAG00000028460) LSM11 (ENSOGAG00000009059) THG1L (ENSOGAG00000009057) ENSOGAG00000025029 SOX30 (ENSOGAG00000009055) ENSOGAG00000032792 ADAM19 (ENSOGAG00000006295) NIPAL4 (ENSOGAG00000016545) CYFIP2 (ENSOGAG00000016540) FNDC9 (ENSOGAG00000011221) ITK (ENSOGAG00000016539) ENSOGAG00000030984 GARIN3 (ENSOGAG00000005476) MED7 (ENSOGAG00000005475) HAVCR2 (ENSOGAG00000005472) Haplorrhini ANCESTRAL SPECIES 4 ENSGT00910000147255 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Tarsier MODERN SPECIES 3567 RNF145 (ENSTSYG00000004024) EBF1 (ENSTSYG00000007975) ##22 Simiiformes ANCESTRAL SPECIES 6 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Platyrrhini ANCESTRAL SPECIES 19 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.o.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT01050000248309 ENSGT00940000154863.db.a.b ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B.c ENSGT00940000154444.A Cebidae ANCESTRAL SPECIES 24 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.o.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT01050000248309 ENSGT00940000154863.db.a.b ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B.c ENSGT00940000154444.A Marmoset MODERN SPECIES 11 ENSCJAG00000019165 SLU7 (ENSCJAG00000019132) FAM200C (ENSCJAG00000022257) C1QTNF2 (ENSCJAG00000019125) CCNJL (ENSCJAG00000019119) ENSCJAG00000019114 ENSCJAG00000059463 TTC1 (ENSCJAG00000019084) PWWP2A (ENSCJAG00000019106) ENSCJAG00000087312 ADRA1B (ENSCJAG00000019081) IL12B (ENSCJAG00000019062) UBLCP1 (ENSCJAG00000019057) RNF145 (ENSCJAG00000019025) ENSCJAG00000064283 EBF1 (ENSCJAG00000019016) ##22 ENSCJAG00000085744 CLINT1 (ENSCJAG00000018990) LSM11 (ENSCJAG00000018985) THG1L (ENSCJAG00000018973) ENSCJAG00000070781 ENSCJAG00000085532 C5orf52 (ENSCJAG00000018969) SOX30 (ENSCJAG00000018960) NIPAL4 (ENSCJAG00000018926) ADAM19 (ENSCJAG00000018932) FNDC9 (ENSCJAG00000068975) ENSCJAG00000056918 CYFIP2 (ENSCJAG00000018862) ITK (ENSCJAG00000018825) GARIN3 (ENSCJAG00000018822) Cebidae_a ANCESTRAL SPECIES 19 ENSGT00940000154245.A.s ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.o.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT01050000248309 ENSGT00940000154863.db.a.b ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B.c ENSGT00940000154444.A ENSGT00940000156018.B Capuchin MODERN SPECIES 291 ENSCCAG00000038036 SLU7 (ENSCCAG00000035808) ZBED8 (ENSCCAG00000020354) C1QTNF2 (ENSCCAG00000024816) CCNJL (ENSCCAG00000029549) FABP6 (ENSCCAG00000013729) PWWP2A (ENSCCAG00000020613) TTC1 (ENSCCAG00000021625) ENSCCAG00000021415 ADRA1B (ENSCCAG00000033654) IL12B (ENSCCAG00000024144) ENSCCAG00000031844 UBLCP1 (ENSCCAG00000023241) RNF145 (ENSCCAG00000035398) EBF1 (ENSCCAG00000034069) ##22 AKR1C1 (ENSCCAG00000035504) AKR1E2 (ENSCCAG00000025249) KLF6 (ENSCCAG00000036533) Bolivian squirrel monkey MODERN SPECIES 109 ENSSBOG00000021032 ATP10B (ENSSBOG00000031861) ENSSBOG00000012956 SLU7 (ENSSBOG00000003225) FAM200C (ENSSBOG00000018847) C1QTNF2 (ENSSBOG00000032053) CCNJL (ENSSBOG00000022971) FABP6 (ENSSBOG00000024801) ENSSBOG00000008426 PWWP2A (ENSSBOG00000025619) TTC1 (ENSSBOG00000030335) ADRA1B (ENSSBOG00000023488) IL12B (ENSSBOG00000025424) UBLCP1 (ENSSBOG00000022274) RNF145 (ENSSBOG00000034936) EBF1 (ENSSBOG00000027616) ##22 ENSSBOG00000022000 CLINT1 (ENSSBOG00000025062) LSM11 (ENSSBOG00000020709) THG1L (ENSSBOG00000024790) C5orf52 (ENSSBOG00000027715) SOX30 (ENSSBOG00000020019) ADAM19 (ENSSBOG00000006447) NIPAL4 (ENSSBOG00000030733) CYFIP2 (ENSSBOG00000026343) ENSSBOG00000025819 ENSSBOG00000029539 ITK (ENSSBOG00000029041) GARIN3 (ENSSBOG00000024328) ENSSBOG00000017937 HAVCR2 (ENSSBOG00000029757) Mas night monkey MODERN SPECIES 610 ENSANAG00000015848 SLU7 (ENSANAG00000028320) FAM200C (ENSANAG00000015834) C1QTNF2 (ENSANAG00000021073) ENSANAG00000024116 CCNJL (ENSANAG00000036259) FABP6 (ENSANAG00000022293) ENSANAG00000034851 PWWP2A (ENSANAG00000037542) TTC1 (ENSANAG00000032998) ADRA1B (ENSANAG00000029288) ENSANAG00000020188 IL12B (ENSANAG00000007646) UBLCP1 (ENSANAG00000014625) RNF145 (ENSANAG00000028773) EBF1 (ENSANAG00000036087) ##22 ENSANAG00000010880 Catarrhini ANCESTRAL SPECIES 7 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Hominoidea ANCESTRAL SPECIES 8 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281.g ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.p Hominidae ANCESTRAL SPECIES 7 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00390000012916.h.a.b ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281.g ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.p Homo/Pan/Gorilla group ANCESTRAL SPECIES 7 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00390000012916.h.a.b ENSGT00940000159349 ENSGT00940000157139.i ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281.g ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.p Homo/Pan group ANCESTRAL SPECIES 8 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00390000012916.h.a.b ENSGT00940000159349 ENSGT00940000157139.i ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281.h ENSGT00390000017762 ENSGT00940000157281.g ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.p Pan ANCESTRAL SPECIES 10 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00390000012916.h.a.b ENSGT00940000159349 ENSGT00940000157139.i ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281.h ENSGT00390000017762 ENSGT00940000157281.g ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.p Bonobo MODERN SPECIES 18 ATP10B (ENSPPAG00000040058) PTTG1 (ENSPPAG00000030326) SLU7 (ENSPPAG00000032717) FAM200C (ENSPPAG00000009361) C1QTNF2 (ENSPPAG00000038286) ENSPPAG00000030618 CCNJL (ENSPPAG00000039661) ENSPPAG00000042064 PWWP2A (ENSPPAG00000029086) TTC1 (ENSPPAG00000043697) ADRA1B (ENSPPAG00000041419) IL12B (ENSPPAG00000037071) UBLCP1 (ENSPPAG00000031061) ENSPPAG00000009096 ENSPPAG00000010576 EBF1 (ENSPPAG00000015552) ##22 ENSPPAG00000038620 CLINT1 (ENSPPAG00000033967) ENSPPAG00000019327 THG1L (ENSPPAG00000042438) C5orf52 (ENSPPAG00000039111) SOX30 (ENSPPAG00000042889) ADAM19 (ENSPPAG00000032090) NIPAL4 (ENSPPAG00000029722) CYFIP2 (ENSPPAG00000042023) ITK (ENSPPAG00000031516) GARIN3 (ENSPPAG00000032420) MED7 (ENSPPAG00000025746) HAVCR2 (ENSPPAG00000026219) ENSPPAG00000033621 TIMD4 (ENSPPAG00000025225) Chimpanzee MODERN SPECIES 18 GABRB2 (ENSPTRG00000017494) ATP10B (ENSPTRG00000017493) PTTG1 (ENSPTRG00000017492) SLU7 (ENSPTRG00000017491) FAM200C (ENSPTRG00000042098) C1QTNF2 (ENSPTRG00000017489) ENSPTRG00000046075 CCNJL (ENSPTRG00000017488) FABP6 (ENSPTRG00000017487) PWWP2A (ENSPTRG00000017486) TTC1 (ENSPTRG00000017484) ADRA1B (ENSPTRG00000017482) IL12B (ENSPTRG00000017481) UBLCP1 (ENSPTRG00000017480) RNF145 (ENSPTRG00000017479) EBF1 (ENSPTRG00000017477) ##22 ENSPTRG00000042059 ENSPTRG00000028515 CLINT1 (ENSPTRG00000052146) LSM11 (ENSPTRG00000017474) THG1L (ENSPTRG00000017473) C5H5orf52 (ENSPTRG00000017472) SOX30 (ENSPTRG00000017471) ADAM19 (ENSPTRG00000017470) NIPAL4 (ENSPTRG00000017469) FNDC9 (ENSPTRG00000041848) CYFIP2 (ENSPTRG00000017465) ITK (ENSPTRG00000017464) GARIN3 (ENSPTRG00000017463) MED7 (ENSPTRG00000017462) HAVCR2 (ENSPTRG00000017461) Human MODERN SPECIES 17 GABRA6 (ENSG00000145863) GABRB2 (ENSG00000145864) ATP10B (ENSG00000118322) PTTG1 (ENSG00000164611) SLU7 (ENSG00000164609) FAM200C (ENSG00000221886) C1QTNF2 (ENSG00000145861) CCNJL (ENSG00000135083) FABP6 (ENSG00000170231) PWWP2A (ENSG00000170234) TTC1 (ENSG00000113312) ADRA1B (ENSG00000170214) IL12B (ENSG00000113302) UBLCP1 (ENSG00000164332) RNF145 (ENSG00000145860) EBF1 (ENSG00000164330) ##22 CLINT1 (ENSG00000113282) LSM11 (ENSG00000155858) THG1L (ENSG00000113272) C5orf52 (ENSG00000187658) SOX30 (ENSG00000039600) NIPAL4 (ENSG00000172548) ADAM19 (ENSG00000135074) FNDC9 (ENSG00000172568) ENSG00000285868 CYFIP2 (ENSG00000055163) GARIN3 (ENSG00000170613) ITK (ENSG00000113263) MED7 (ENSG00000155868) HAVCR2 (ENSG00000135077) HAVCR1 (ENSG00000113249) Gorilla MODERN SPECIES 18 ATP10B (ENSGGOG00000006109) PTTG1 (ENSGGOG00000016937) SLU7 (ENSGGOG00000005591) FAM200C (ENSGGOG00000015371) C1QTNF2 (ENSGGOG00000005719) ENSGGOG00000043342 ENSGGOG00000004645 ENSGGOG00000004642 PWWP2A (ENSGGOG00000001181) TTC1 (ENSGGOG00000001179) ADRA1B (ENSGGOG00000001969) IL12B (ENSGGOG00000004419) UBLCP1 (ENSGGOG00000014527) RNF145 (ENSGGOG00000023385) ENSGGOG00000004151 EBF1 (ENSGGOG00000000033) ##22 ENSGGOG00000023556 CLINT1 (ENSGGOG00000008481) LSM11 (ENSGGOG00000008672) THG1L (ENSGGOG00000008668) C5orf52 (ENSGGOG00000010030) SOX30 (ENSGGOG00000025241) ADAM19 (ENSGGOG00000014156) NIPAL4 (ENSGGOG00000014146) FNDC9 (ENSGGOG00000012060) CYFIP2 (ENSGGOG00000012019) ITK (ENSGGOG00000003614) GARIN3 (ENSGGOG00000008998) MED7 (ENSGGOG00000002565) HAVCR2 (ENSGGOG00000023106) ENSGGOG00000008871 Orangutan MODERN SPECIES 18 PTTG1 (ENSPPYG00000016009) SLU7 (ENSPPYG00000016008) FAM200C (ENSPPYG00000016007) C1QTNF2 (ENSPPYG00000036992) ENSPPYG00000032746 ENSPPYG00000016005 FABP6 (ENSPPYG00000016004) ENSPPYG00000016003 ENSPPYG00000038606 TTC1 (ENSPPYG00000016002) ADRA1B (ENSPPYG00000016001) IL12B (ENSPPYG00000016000) UBLCP1 (ENSPPYG00000015999) RNF145 (ENSPPYG00000015998) ENSPPYG00000015996 EBF1 (ENSPPYG00000015995) ##22 CLINT1 (ENSPPYG00000015994) LSM11 (ENSPPYG00000029792) THG1L (ENSPPYG00000015993) ENSPPYG00000015992 SOX30 (ENSPPYG00000031159) ENSPPYG00000015991 NIPAL4 (ENSPPYG00000037418) ENSPPYG00000034139 FNDC9 (ENSPPYG00000015988) CYFIP2 (ENSPPYG00000015987) ITK (ENSPPYG00000015986) GARIN3 (ENSPPYG00000015985) ENSPPYG00000015984 ENSPPYG00000015983 TIMD4 (ENSPPYG00000015982) Gibbon MODERN SPECIES 11 GABRB2 (ENSNLEG00000004479) ATP10B (ENSNLEG00000004434) PTTG1 (ENSNLEG00000004396) SLU7 (ENSNLEG00000004355) FAM200C (ENSNLEG00000018765) C1QTNF2 (ENSNLEG00000031564) ENSNLEG00000032973 CCNJL (ENSNLEG00000004343) ENSNLEG00000004336 PWWP2A (ENSNLEG00000018764) TTC1 (ENSNLEG00000004317) ENSNLEG00000004316 IL12B (ENSNLEG00000004287) UBLCP1 (ENSNLEG00000004270) RNF145 (ENSNLEG00000004241) EBF1 (ENSNLEG00000004218) ##22 ENSNLEG00000004216 CLINT1 (ENSNLEG00000004186) LSM11 (ENSNLEG00000004178) THG1L (ENSNLEG00000004166) ENSNLEG00000027951 SOX30 (ENSNLEG00000004158) ADAM19 (ENSNLEG00000004135) NIPAL4 (ENSNLEG00000004132) CYFIP2 (ENSNLEG00000003979) FNDC9 (ENSNLEG00000004128) ITK (ENSNLEG00000003943) GARIN3 (ENSNLEG00000003940) MED7 (ENSNLEG00000003939) HAVCR2 (ENSNLEG00000003917) ENSNLEG00000028009 Cercopithecidae ANCESTRAL SPECIES 5 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Rhinopithecus ANCESTRAL SPECIES 931 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 Golden snub-nosed monkey MODERN SPECIES 1684 RNF145 (ENSRROG00000037930) EBF1 (ENSRROG00000029258) ##22 Black snub-nosed monkey MODERN SPECIES 2581 EBF1 (ENSRBIG00000043503) ##22 Cercopithecinae ANCESTRAL SPECIES 9 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Cercopithecinae_a ANCESTRAL SPECIES 9 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00960000186777 ENSGT00390000012916.h.a.b ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Macaca ANCESTRAL SPECIES 7 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00960000186777 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Pig-tailed macaque MODERN SPECIES 581 PTTG1 (ENSMNEG00000042834) SLU7 (ENSMNEG00000029132) FAM200C (ENSMNEG00000027228) C1QTNF2 (ENSMNEG00000030599) ENSMNEG00000036332 CCNJL (ENSMNEG00000028285) ENSMNEG00000032357 FABP6 (ENSMNEG00000042984) PWWP2A (ENSMNEG00000040509) TTC1 (ENSMNEG00000043439) ADRA1B (ENSMNEG00000034660) IL12B (ENSMNEG00000033711) UBLCP1 (ENSMNEG00000029679) RNF145 (ENSMNEG00000036090) ENSMNEG00000006972 EBF1 (ENSMNEG00000031614) ##22 ENSMNEG00000041280 ENSMNEG00000031691 CLINT1 (ENSMNEG00000034378) ENSMNEG00000039267 LSM11 (ENSMNEG00000045265) THG1L (ENSMNEG00000038597) C5orf52 (ENSMNEG00000037458) SOX30 (ENSMNEG00000034013) ADAM19 (ENSMNEG00000043474) NIPAL4 (ENSMNEG00000034144) CYFIP2 (ENSMNEG00000039378) FNDC9 (ENSMNEG00000038568) ITK (ENSMNEG00000014666) GARIN3 (ENSMNEG00000041469) MED7 (ENSMNEG00000014130) Macaca_a ANCESTRAL SPECIES 8 ENSGT00940000154245.A ENSGT00910000147255 ENSGT00940000159531 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT01030000240088 ENSGT01100000263539.b.a.a.a.a.a.a.b.a.c.a ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A Rhesus MODERN SPECIES 16 ENSMMUG00000060955 ATP10B (ENSMMUG00000012643) PTTG1 (ENSMMUG00000023077) SLU7 (ENSMMUG00000023075) FAM200C (ENSMMUG00000023074) ENSMMUG00000056678 C1QTNF2 (ENSMMUG00000015219) CCNJL (ENSMMUG00000023073) FABP6 (ENSMMUG00000023072) PWWP2A (ENSMMUG00000011472) TTC1 (ENSMMUG00000011471) ADRA1B (ENSMMUG00000050043) IL12B (ENSMMUG00000021701) UBLCP1 (ENSMMUG00000021700) RNF145 (ENSMMUG00000021699) EBF1 (ENSMMUG00000021696) ##22 ENSMMUG00000062861 CLINT1 (ENSMMUG00000002272) LSM11 (ENSMMUG00000052188) THG1L (ENSMMUG00000050641) ENSMMUG00000060179 ENSMMUG00000049641 SOX30 (ENSMMUG00000021550) ADAM19 (ENSMMUG00000021549) NIPAL4 (ENSMMUG00000021548) FNDC9 (ENSMMUG00000011007) CYFIP2 (ENSMMUG00000010997) ITK (ENSMMUG00000010995) GARIN3 (ENSMMUG00000010994) MED7 (ENSMMUG00000010993) ENSMMUG00000060123 Crab-eating macaque MODERN SPECIES 16 GABRB2 (ENSMFAG00000033709) ENSMFAG00000064402 ENSMFAG00000062368 ATP10B (ENSMFAG00000045373) PTTG1 (ENSMFAG00000036180) SLU7 (ENSMFAG00000002001) FAM200C (ENSMFAG00000017692) CCNJL (ENSMFAG00000002131) FABP6 (ENSMFAG00000002028) PWWP2A (ENSMFAG00000027720) TTC1 (ENSMFAG00000040270) ADRA1B (ENSMFAG00000045077) IL12B (ENSMFAG00000036061) UBLCP1 (ENSMFAG00000045929) RNF145 (ENSMFAG00000002232) EBF1 (ENSMFAG00000034539) ##22 ENSMFAG00000063064 CLINT1 (ENSMFAG00000039041) LSM11 (ENSMFAG00000034084) THG1L (ENSMFAG00000041928) ENSMFAG00000061135 ENSMFAG00000051588 SOX30 (ENSMFAG00000029536) ADAM19 (ENSMFAG00000034190) NIPAL4 (ENSMFAG00000029978) FNDC9 (ENSMFAG00000009168) CYFIP2 (ENSMFAG00000036175) ITK (ENSMFAG00000000719) ENSMFAG00000049581 GARIN3 (ENSMFAG00000034384) MED7 (ENSMFAG00000029781) Cercopithecinae_b ANCESTRAL SPECIES 4 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00960000186777 ENSGT00390000012916.h.a.b ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00390000017762 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Olive baboon MODERN SPECIES 15 C1QTNF2 (ENSPANG00000010655) CCNJL (ENSPANG00000003196) ENSPANG00000043144 ENSPANG00000041430 PWWP2A (ENSPANG00000013257) TTC1 (ENSPANG00000005268) ENSPANG00000047078 ADRA1B (ENSPANG00000045795) ENSPANG00000038121 ENSPANG00000047994 ENSPANG00000042644 IL12B (ENSPANG00000000116) UBLCP1 (ENSPANG00000045762) RNF145 (ENSPANG00000003367) ENSPANG00000044981 EBF1 (ENSPANG00000010656) ##22 ENSPANG00000045969 CLINT1 (ENSPANG00000013184) ENSPANG00000031558 THG1L (ENSPANG00000039425) ENSPANG00000038991 C5orf52 (ENSPANG00000048757) SOX30 (ENSPANG00000026421) ADAM19 (ENSPANG00000011296) NIPAL4 (ENSPANG00000013719) FNDC9 (ENSPANG00000017073) CYFIP2 (ENSPANG00000006207) ITK (ENSPANG00000007090) GARIN3 (ENSPANG00000003197) MED7 (ENSPANG00000009343) HAVCR2 (ENSPANG00000008124) Cercopithecinae_d ANCESTRAL SPECIES 53 ENSGT00390000009693.n ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00960000186777 ENSGT00390000012916.h.a.b ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000010721.a.a.b ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000013443.c.e.a.b ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00390000011578 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Drill MODERN SPECIES 1506 ATP10B (ENSMLEG00000044134) PTTG1 (ENSMLEG00000036351) SLU7 (ENSMLEG00000037647) FAM200C (ENSMLEG00000000481) C1QTNF2 (ENSMLEG00000039438) ENSMLEG00000032350 CCNJL (ENSMLEG00000043216) FABP6 (ENSMLEG00000039832) PWWP2A (ENSMLEG00000043117) TTC1 (ENSMLEG00000043939) ADRA1B (ENSMLEG00000037875) ENSMLEG00000027859 IL12B (ENSMLEG00000033746) UBLCP1 (ENSMLEG00000033543) RNF145 (ENSMLEG00000031957) EBF1 (ENSMLEG00000036042) ##22 ENSMLEG00000041026 CLINT1 (ENSMLEG00000028093) LSM11 (ENSMLEG00000027420) THG1L (ENSMLEG00000025109) C5orf52 (ENSMLEG00000019571) SOX30 (ENSMLEG00000037153) ENSMLEG00000031612 ADAM19 (ENSMLEG00000034880) NIPAL4 (ENSMLEG00000041361) CYFIP2 (ENSMLEG00000031854) FNDC9 (ENSMLEG00000023465) ITK (ENSMLEG00000041825) GARIN3 (ENSMLEG00000021576) MED7 (ENSMLEG00000020476) HAVCR2 (ENSMLEG00000035212) Sooty mangabey MODERN SPECIES 597 PTTG1 (ENSCATG00000002585) SLU7 (ENSCATG00000026140) FAM200C (ENSCATG00000022751) C1QTNF2 (ENSCATG00000032219) ENSCATG00000008381 ENSCATG00000043862 CCNJL (ENSCATG00000039008) FABP6 (ENSCATG00000042327) PWWP2A (ENSCATG00000032682) TTC1 (ENSCATG00000043553) ADRA1B (ENSCATG00000043853) ENSCATG00000005901 IL12B (ENSCATG00000035975) UBLCP1 (ENSCATG00000032405) RNF145 (ENSCATG00000042232) EBF1 (ENSCATG00000041829) ##22 ENSCATG00000044006 CLINT1 (ENSCATG00000031499) LSM11 (ENSCATG00000042524) THG1L (ENSCATG00000040510) C5orf52 (ENSCATG00000040595) SOX30 (ENSCATG00000043607) ADAM19 (ENSCATG00000032288) NIPAL4 (ENSCATG00000038298) FNDC9 (ENSCATG00000022553) CYFIP2 (ENSCATG00000037141) ITK (ENSCATG00000031267) GARIN3 (ENSCATG00000033615) MED7 (ENSCATG00000023094) HAVCR2 (ENSCATG00000035422) HAVCR1 (ENSCATG00000018304) Vervet Monkey MODERN SPECIES 15 GABRA6 (ENSCSAG00000010336) GABRB2 (ENSCSAG00000010344) ATP10B (ENSCSAG00000010352) ENSCSAG00000010369 SLU7 (ENSCSAG00000010383) FAM200C (ENSCSAG00000019723) C1QTNF2 (ENSCSAG00000010387) CCNJL (ENSCSAG00000010391) FABP6 (ENSCSAG00000010396) PWWP2A (ENSCSAG00000010404) TTC1 (ENSCSAG00000010420) ADRA1B (ENSCSAG00000010426) IL12B (ENSCSAG00000010459) UBLCP1 (ENSCSAG00000010476) RNF145 (ENSCSAG00000010489) EBF1 (ENSCSAG00000010520) ##22 CLINT1 (ENSCSAG00000010545) LSM11 (ENSCSAG00000010556) ENSCSAG00000010563 THG1L (ENSCSAG00000010572) SOX30 (ENSCSAG00000010596) ADAM19 (ENSCSAG00000010615) NIPAL4 (ENSCSAG00000010642) FNDC9 (ENSCSAG00000019722) CYFIP2 (ENSCSAG00000010668) ITK (ENSCSAG00000010692) GARIN3 (ENSCSAG00000010701) MED7 (ENSCSAG00000019721) HAVCR2 (ENSCSAG00000010708) HAVCR1 (ENSCSAG00000010724) TIMD4 (ENSCSAG00000010730) Laurasiatheria ANCESTRAL SPECIES 8 ENSGT00910000147255 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Eulipotyphla ANCESTRAL SPECIES ENSGT00950000182859.A.a.b.b ##22 Hedgehog MODERN SPECIES 5792 EBF1 (ENSEEUG00000004482) ##22 Laurasiatheria_a ANCESTRAL SPECIES 9 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Laurasiatheria_b ANCESTRAL SPECIES 9 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00500000044831.a.a.b.l ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 Carnivora ANCESTRAL SPECIES 8 ENSGT00940000166149 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00500000044831.a.a.b.l ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Felidae ANCESTRAL SPECIES 6 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.i ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Panthera ANCESTRAL SPECIES 6 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.i ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Tiger DUPLICATION Tiger MODERN SPECIES 103 GABRA6 (ENSPTIG00000017040) GABRB2 (ENSPTIG00000013946) ENSPTIG00000007286 SLU7 (ENSPTIG00000005434) FAM200C (ENSPTIG00000000872) C1QTNF2 (ENSPTIG00000021838) CCNJL (ENSPTIG00000021421) FABP6 (ENSPTIG00000019586) ENSPTIG00000018722 TTC1 (ENSPTIG00000017706) ADRA1B (ENSPTIG00000017492) ENSPTIG00000000721 IL12B (ENSPTIG00000016911) UBLCP1 (ENSPTIG00000016150) RNF145 (ENSPTIG00000005419) ENSPTIG00000000083 ##22 ENSPTIG00000019712 ##22 ENSPTIG00000019293 CLINT1 (ENSPTIG00000015240) LSM11 (ENSPTIG00000014465) THG1L (ENSPTIG00000013921) SOX30 (ENSPTIG00000013560) ADAM19 (ENSPTIG00000006421) NIPAL4 (ENSPTIG00000000723) CYFIP2 (ENSPTIG00000011198) ITK (ENSPTIG00000009243) GARIN3 (ENSPTIG00000008875) MED7 (ENSPTIG00000007305) HAVCR2 (ENSPTIG00000002332) ENSPTIG00000019717 TIMD4 (ENSPTIG00000018290) Tiger MODERN SPECIES 103 GABRB2 (ENSPTIG00000013946) ENSPTIG00000007286 SLU7 (ENSPTIG00000005434) FAM200C (ENSPTIG00000000872) C1QTNF2 (ENSPTIG00000021838) CCNJL (ENSPTIG00000021421) FABP6 (ENSPTIG00000019586) ENSPTIG00000018722 TTC1 (ENSPTIG00000017706) ADRA1B (ENSPTIG00000017492) ENSPTIG00000000721 IL12B (ENSPTIG00000016911) UBLCP1 (ENSPTIG00000016150) RNF145 (ENSPTIG00000005419) ENSPTIG00000000083 ##22 ENSPTIG00000019712 ##22 ENSPTIG00000019293 CLINT1 (ENSPTIG00000015240) LSM11 (ENSPTIG00000014465) THG1L (ENSPTIG00000013921) SOX30 (ENSPTIG00000013560) ADAM19 (ENSPTIG00000006421) NIPAL4 (ENSPTIG00000000723) CYFIP2 (ENSPTIG00000011198) ITK (ENSPTIG00000009243) GARIN3 (ENSPTIG00000008875) MED7 (ENSPTIG00000007305) HAVCR2 (ENSPTIG00000002332) ENSPTIG00000019717 TIMD4 (ENSPTIG00000018290) SGCD (ENSPTIG00000017200) Panthera_a ANCESTRAL SPECIES 3 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.i ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00950000182891.a.a.b.a.a.a.a ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 leopard MODERN SPECIES 157 ENSPPRG00000013682 SLU7 (ENSPPRG00000013856) FAM200C (ENSPPRG00000018806) C1QTNF2 (ENSPPRG00000014166) CCNJL (ENSPPRG00000014415) FABP6 (ENSPPRG00000014547) PWWP2A (ENSPPRG00000014739) TTC1 (ENSPPRG00000014921) ADRA1B (ENSPPRG00000014950) ENSPPRG00000018892 IL12B (ENSPPRG00000015059) UBLCP1 (ENSPPRG00000015145) RNF145 (ENSPPRG00000015439) EBF1 (ENSPPRG00000016201) ##22 ENSPPRG00000016274 ENSPPRG00000016332 lion MODERN SPECIES ATP10B (ENSPLOG00000002597) ENSPLOG00000002569 SLU7 (ENSPLOG00000002543) FAM200C (ENSPLOG00000002529) ENSPLOG00000002514 C1QTNF2 (ENSPLOG00000002500) CCNJL (ENSPLOG00000002482) FABP6 (ENSPLOG00000002470) PWWP2A (ENSPLOG00000002448) TTC1 (ENSPLOG00000002425) ADRA1B (ENSPLOG00000002412) ENSPLOG00000002403 IL12B (ENSPLOG00000002378) UBLCP1 (ENSPLOG00000002343) RNF145 (ENSPLOG00000002290) EBF1 (ENSPLOG00000002168) ##22 ENSPLOG00000002104 CLINT1 (ENSPLOG00000002054) LSM11 (ENSPLOG00000002031) THG1L (ENSPLOG00000002004) SOX30 (ENSPLOG00000001959) ADAM19 (ENSPLOG00000001872) NIPAL4 (ENSPLOG00000001845) FNDC9 (ENSPLOG00000001835) CYFIP2 (ENSPLOG00000001761) ITK (ENSPLOG00000001668) GARIN3 (ENSPLOG00000001649) MED7 (ENSPLOG00000001630) ENSPLOG00000001453 SGCD (ENSPLOG00000001358) ENSPLOG00000001338 Cat MODERN SPECIES ATP10B (ENSFCAG00000004647) ENSFCAG00000024074 SLU7 (ENSFCAG00000011152) FAM200C (ENSFCAG00000037292) C1QTNF2 (ENSFCAG00000039423) ENSFCAG00000053200 CCNJL (ENSFCAG00000029610) FABP6 (ENSFCAG00000036330) PWWP2A (ENSFCAG00000041159) TTC1 (ENSFCAG00000029425) ADRA1B (ENSFCAG00000011146) ENSFCAG00000052138 IL12B (ENSFCAG00000015571) UBLCP1 (ENSFCAG00000026371) RNF145 (ENSFCAG00000012160) EBF1 (ENSFCAG00000008547) ##22 CLINT1 (ENSFCAG00000001267) LSM11 (ENSFCAG00000001266) THG1L (ENSFCAG00000022752) SOX30 (ENSFCAG00000003853) ADAM19 (ENSFCAG00000009956) NIPAL4 (ENSFCAG00000041380) CYFIP2 (ENSFCAG00000009953) ITK (ENSFCAG00000009952) GARIN3 (ENSFCAG00000041496) MED7 (ENSFCAG00000015029) HAVCR2 (ENSFCAG00000035171) HAVCR1 (ENSFCAG00000043459) TIMD4 (ENSFCAG00000033198) SGCD (ENSFCAG00000023950) ENSFCAG00000053803 Caniformia ANCESTRAL SPECIES 5 ENSGT00940000166149 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00500000044831.a.a.b.l ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Canidae ANCESTRAL SPECIES 7 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT01090000260046.e.a.a.a ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Red fox DUPLICATION Red fox MODERN SPECIES 2 GABRA6 (ENSVVUG00000003850) GABRB2 (ENSVVUG00000003904) ATP10B (ENSVVUG00000003923) ENSVVUG00000003974 SLU7 (ENSVVUG00000003989) C1QTNF2 (ENSVVUG00000004013) CCNJL (ENSVVUG00000004019) FABP6 (ENSVVUG00000004029) ENSVVUG00000004072 TTC1 (ENSVVUG00000004077) ADRA1B (ENSVVUG00000004081) ENSVVUG00000004097 IL12B (ENSVVUG00000004129) UBLCP1 (ENSVVUG00000004137) RNF145 (ENSVVUG00000004153) ENSVVUG00000004159 ##22 ENSVVUG00000004170 ##22 CLINT1 (ENSVVUG00000004216) THG1L (ENSVVUG00000004234) ADAM19 (ENSVVUG00000004275) NIPAL4 (ENSVVUG00000004308) CYFIP2 (ENSVVUG00000004333) FNDC9 (ENSVVUG00000004396) ITK (ENSVVUG00000004409) GARIN3 (ENSVVUG00000004485) MED7 (ENSVVUG00000004493) HAVCR2 (ENSVVUG00000004500) HAVCR1 (ENSVVUG00000004509) TIMD4 (ENSVVUG00000004520) SGCD (ENSVVUG00000004564) ENSVVUG00000004602 Red fox MODERN SPECIES 2 GABRB2 (ENSVVUG00000003904) ATP10B (ENSVVUG00000003923) ENSVVUG00000003974 SLU7 (ENSVVUG00000003989) C1QTNF2 (ENSVVUG00000004013) CCNJL (ENSVVUG00000004019) FABP6 (ENSVVUG00000004029) ENSVVUG00000004072 TTC1 (ENSVVUG00000004077) ADRA1B (ENSVVUG00000004081) ENSVVUG00000004097 IL12B (ENSVVUG00000004129) UBLCP1 (ENSVVUG00000004137) RNF145 (ENSVVUG00000004153) ENSVVUG00000004159 ##22 ENSVVUG00000004170 ##22 CLINT1 (ENSVVUG00000004216) THG1L (ENSVVUG00000004234) ADAM19 (ENSVVUG00000004275) NIPAL4 (ENSVVUG00000004308) CYFIP2 (ENSVVUG00000004333) FNDC9 (ENSVVUG00000004396) ITK (ENSVVUG00000004409) GARIN3 (ENSVVUG00000004485) MED7 (ENSVVUG00000004493) HAVCR2 (ENSVVUG00000004500) HAVCR1 (ENSVVUG00000004509) TIMD4 (ENSVVUG00000004520) SGCD (ENSVVUG00000004564) ENSVVUG00000004602 ENSVVUG00000004608 Canis_lupus ANCESTRAL SPECIES 12 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Dingo DUPLICATION Dingo MODERN SPECIES 324 GABRB2 (ENSCAFG00020001544) ATP10B (ENSCAFG00020001491) ENSCAFG00020001472 SLU7 (ENSCAFG00020001456) FAM200C (ENSCAFG00020001453) C1QTNF2 (ENSCAFG00020001444) CCNJL (ENSCAFG00020001434) FABP6 (ENSCAFG00020001419) ENSCAFG00020025615 TTC1 (ENSCAFG00020025613) ADRA1B (ENSCAFG00020025610) IL12B (ENSCAFG00020025606) UBLCP1 (ENSCAFG00020025603) RNF145 (ENSCAFG00020025600) ENSCAFG00020025597 ##22 ENSCAFG00020025593 ##22 CLINT1 (ENSCAFG00020025584) LSM11 (ENSCAFG00020025581) THG1L (ENSCAFG00020025580) SOX30 (ENSCAFG00020025579) ADAM19 (ENSCAFG00020025536) NIPAL4 (ENSCAFG00020025519) FNDC9 (ENSCAFG00020025517) ENSCAFG00020024168 ITK (ENSCAFG00020023983) GARIN3 (ENSCAFG00020023977) MED7 (ENSCAFG00020023973) HAVCR2 (ENSCAFG00020023969) ENSCAFG00020023950 ENSCAFG00020023947 SGCD (ENSCAFG00020023945) Dingo MODERN SPECIES 324 GABRA6 (ENSCAFG00020001603) GABRB2 (ENSCAFG00020001544) ATP10B (ENSCAFG00020001491) ENSCAFG00020001472 SLU7 (ENSCAFG00020001456) FAM200C (ENSCAFG00020001453) C1QTNF2 (ENSCAFG00020001444) CCNJL (ENSCAFG00020001434) FABP6 (ENSCAFG00020001419) ENSCAFG00020025615 TTC1 (ENSCAFG00020025613) ADRA1B (ENSCAFG00020025610) IL12B (ENSCAFG00020025606) UBLCP1 (ENSCAFG00020025603) RNF145 (ENSCAFG00020025600) ENSCAFG00020025597 ##22 ENSCAFG00020025593 ##22 CLINT1 (ENSCAFG00020025584) LSM11 (ENSCAFG00020025581) THG1L (ENSCAFG00020025580) SOX30 (ENSCAFG00020025579) ADAM19 (ENSCAFG00020025536) NIPAL4 (ENSCAFG00020025519) FNDC9 (ENSCAFG00020025517) ENSCAFG00020024168 ITK (ENSCAFG00020023983) GARIN3 (ENSCAFG00020023977) MED7 (ENSCAFG00020023973) HAVCR2 (ENSCAFG00020023969) ENSCAFG00020023950 ENSCAFG00020023947 Dog MODERN SPECIES 32 GABRA6 (ENSCAFG00845000820) GABRB2 (ENSCAFG00845000854) ATP10B (ENSCAFG00845000916) PTTG1 (ENSCAFG00845001057) SLU7 (ENSCAFG00845001078) ZBED8 (ENSCAFG00845001117) C1QTNF2 (ENSCAFG00845001139) ENSCAFG00845001155 FABP6 (ENSCAFG00845001171) PWWP2A (ENSCAFG00845001220) TTC1 (ENSCAFG00845001251) ADRA1B (ENSCAFG00845001264) IL12B (ENSCAFG00845001277) UBLCP1 (ENSCAFG00845001304) RNF145 (ENSCAFG00845001329) EBF1 (ENSCAFG00845001379) ##22 CLINT1 (ENSCAFG00845001528) LSM11 (ENSCAFG00845001569) THG1L (ENSCAFG00845001599) SOX30 (ENSCAFG00845001631) ENSCAFG00845001798 NIPAL4 (ENSCAFG00845002106) ENSCAFG00845002164 FNDC9 (ENSCAFG00845002274) ITK (ENSCAFG00845002293) GARIN3 (ENSCAFG00845002317) MED7 (ENSCAFG00845002415) HAVCR2 (ENSCAFG00845002443) HAVCR1 (ENSCAFG00845002501) SGCD (ENSCAFG00845002587) ENSCAFG00845002653 Caniformia_b ANCESTRAL SPECIES 4 ENSGT00940000166149 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00500000044831.a.a.b.l ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Ursidae ANCESTRAL SPECIES 24 ENSGT00910000147555 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00950000186262 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00500000044831.a.a.b.l ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Giant Panda MODERN SPECIES 13 ENSAMEG00000029586 ATP10B (ENSAMEG00000006672) ENSAMEG00000006653 SLU7 (ENSAMEG00000006613) FAM200C (ENSAMEG00000029793) C1QTNF2 (ENSAMEG00000006609) CCNJL (ENSAMEG00000006599) FABP6 (ENSAMEG00000006588) PWWP2A (ENSAMEG00000006582) TTC1 (ENSAMEG00000006568) ADRA1B (ENSAMEG00000006563) ENSAMEG00000030971 IL12B (ENSAMEG00000006528) UBLCP1 (ENSAMEG00000006496) RNF145 (ENSAMEG00000006459) EBF1 (ENSAMEG00000006442) ##22 CLINT1 (ENSAMEG00000006402) LSM11 (ENSAMEG00000006379) THG1L (ENSAMEG00000026033) SOX30 (ENSAMEG00000006342) ENSAMEG00000006282 NIPAL4 (ENSAMEG00000030915) ENSAMEG00000006085 FNDC9 (ENSAMEG00000006265) ITK (ENSAMEG00000005998) GARIN3 (ENSAMEG00000005995) MED7 (ENSAMEG00000027260) HAVCR2 (ENSAMEG00000005987) ENSAMEG00000005979 ENSAMEG00000005968 ENSAMEG00000024339 Ursus ANCESTRAL SPECIES 10 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139.n ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00950000186262 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00500000044831.a.a.b.l ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Polar bear MODERN SPECIES 179 ATP10B (ENSUMAG00000024827) ENSUMAG00000024829 SLU7 (ENSUMAG00000000110) FAM200C (ENSUMAG00000000170) C1QTNF2 (ENSUMAG00000000214) CCNJL (ENSUMAG00000000308) ENSUMAG00000000423 ENSUMAG00000000451 TTC1 (ENSUMAG00000000467) ADRA1B (ENSUMAG00000000471) ENSUMAG00000000518 IL12B (ENSUMAG00000000612) UBLCP1 (ENSUMAG00000000619) ENSUMAG00000000637 ENSUMAG00000000646 EBF1 (ENSUMAG00000000673) ##22 CLINT1 (ENSUMAG00000000757) THG1L (ENSUMAG00000000769) ADAM19 (ENSUMAG00000000795) NIPAL4 (ENSUMAG00000001130) ENSUMAG00000001175 FNDC9 (ENSUMAG00000002591) ENSUMAG00000002604 ITK (ENSUMAG00000002680) GARIN3 (ENSUMAG00000002684) MED7 (ENSUMAG00000002690) HAVCR2 (ENSUMAG00000002692) ENSUMAG00000002699 TIMD4 (ENSUMAG00000002705) SGCD (ENSUMAG00000002712) ENSUMAG00000002713 Mustelinae ANCESTRAL SPECIES 13 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.h ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 American mink MODERN SPECIES 19 GABRA6 (ENSNVIG00000005627) GABRB2 (ENSNVIG00000005552) ATP10B (ENSNVIG00000005440) ENSNVIG00000005399 SLU7 (ENSNVIG00000005356) FAM200C (ENSNVIG00000005345) C1QTNF2 (ENSNVIG00000005333) CCNJL (ENSNVIG00000005319) FABP6 (ENSNVIG00000005311) PWWP2A (ENSNVIG00000005303) TTC1 (ENSNVIG00000005267) ADRA1B (ENSNVIG00000005259) IL12B (ENSNVIG00000005238) UBLCP1 (ENSNVIG00000005218) RNF145 (ENSNVIG00000005160) COE1 (ENSNVIG00000005007) ##22 CLINT1 (ENSNVIG00000004898) LSM11 (ENSNVIG00000004881) THG1 (ENSNVIG00000004874) SOX30 (ENSNVIG00000004842) ADAM19 (ENSNVIG00000004808) NIPAL4 (ENSNVIG00000004790) FNDC9 (ENSNVIG00000004785) CYFIP2 (ENSNVIG00000004210) ITK (ENSNVIG00000004168) GARIN3 (ENSNVIG00000004165) MED7 (ENSNVIG00000004164) HAVCR2 (ENSNVIG00000004137) ENSNVIG00000004126 TIMD4 (ENSNVIG00000004115) SGCD (ENSNVIG00000004051) Ferret DUPLICATION Ferret MODERN SPECIES 162 ENSMPUG00000013237 ENSMPUG00000013241 SLU7 (ENSMPUG00000013264) FAM200C (ENSMPUG00000019315) ENSMPUG00000013274 C1QTNF2 (ENSMPUG00000013282) CCNJL (ENSMPUG00000013291) FABP6 (ENSMPUG00000013299) PWWP2A (ENSMPUG00000013319) TTC1 (ENSMPUG00000013323) ADRA1B (ENSMPUG00000013327) ENSMPUG00000013331 IL12B (ENSMPUG00000013333) UBLCP1 (ENSMPUG00000013396) RNF145 (ENSMPUG00000013403) ENSMPUG00000013409 ##22 ENSMPUG00000013414 ##22 ENSMPUG00000013444 CLINT1 (ENSMPUG00000013448) ENSMPUG00000013460 THG1L (ENSMPUG00000013462) SOX30 (ENSMPUG00000013465) ADAM19 (ENSMPUG00000013467) NIPAL4 (ENSMPUG00000013472) CYFIP2 (ENSMPUG00000013478) ENSMPUG00000019316 ITK (ENSMPUG00000013488) GARIN3 (ENSMPUG00000013494) HAVCR2 (ENSMPUG00000013496) ENSMPUG00000013499 ENSMPUG00000013513 Ferret MODERN SPECIES 162 ENSMPUG00000013241 SLU7 (ENSMPUG00000013264) FAM200C (ENSMPUG00000019315) ENSMPUG00000013274 C1QTNF2 (ENSMPUG00000013282) CCNJL (ENSMPUG00000013291) FABP6 (ENSMPUG00000013299) PWWP2A (ENSMPUG00000013319) TTC1 (ENSMPUG00000013323) ADRA1B (ENSMPUG00000013327) ENSMPUG00000013331 IL12B (ENSMPUG00000013333) UBLCP1 (ENSMPUG00000013396) RNF145 (ENSMPUG00000013403) ENSMPUG00000013409 ##22 ENSMPUG00000013414 ##22 ENSMPUG00000013444 CLINT1 (ENSMPUG00000013448) ENSMPUG00000013460 THG1L (ENSMPUG00000013462) SOX30 (ENSMPUG00000013465) ADAM19 (ENSMPUG00000013467) NIPAL4 (ENSMPUG00000013472) CYFIP2 (ENSMPUG00000013478) ENSMPUG00000019316 ITK (ENSMPUG00000013488) GARIN3 (ENSMPUG00000013494) HAVCR2 (ENSMPUG00000013496) ENSMPUG00000013499 ENSMPUG00000013513 ENSMPUG00000013518 Laurasiatheria_c ANCESTRAL SPECIES 7 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Equus ANCESTRAL SPECIES 6 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Donkey MODERN SPECIES 29 GABRA6 (ENSEASG00005000575) GABRB2 (ENSEASG00005000588) ATP10B (ENSEASG00005000597) ENSEASG00005000612 SLU7 (ENSEASG00005000613) FAM200C (ENSEASG00005000619) C1QTNF2 (ENSEASG00005000623) CCNJL (ENSEASG00005000630) ENSEASG00005000639 ENSEASG00005034384 TTC1 (ENSEASG00005000653) ADRA1B (ENSEASG00005000662) IL12B (ENSEASG00005000682) UBLCP1 (ENSEASG00005000694) RNF145 (ENSEASG00005000697) EBF1 (ENSEASG00005000716) ##22 ENSEASG00005000709 CLINT1 (ENSEASG00005000743) LSM11 (ENSEASG00005000751) THG1L (ENSEASG00005000757) SOX30 (ENSEASG00005000761) ENSEASG00005000769 NIPAL4 (ENSEASG00005024733) ENSEASG00005000782 FNDC9 (ENSEASG00005031824) ITK (ENSEASG00005000833) GARIN3 (ENSEASG00005000928) MED7 (ENSEASG00005000944) HAVCR2 (ENSEASG00005000959) ENSEASG00005034411 TIMD4 (ENSEASG00005000989) Horse MODERN SPECIES 5 GABRB2 (ENSECAG00000017133) ATP10B (ENSECAG00000021758) ENSECAG00000009520 SLU7 (ENSECAG00000013696) FAM200C (ENSECAG00000004167) CCNJL (ENSECAG00000021303) PWWP2A (ENSECAG00000058444) TTC1 (ENSECAG00000006769) ENSECAG00000031871 ADRA1B (ENSECAG00000011653) ENSECAG00000057534 ENSECAG00000036026 IL12B (ENSECAG00000012803) UBLCP1 (ENSECAG00000019228) RNF145 (ENSECAG00000024020) EBF1 (ENSECAG00000007964) ##22 ENSECAG00000036063 CLINT1 (ENSECAG00000009181) LSM11 (ENSECAG00000039005) SOX30 (ENSECAG00000016620) ADAM19 (ENSECAG00000017922) NIPAL4 (ENSECAG00000000574) CYFIP2 (ENSECAG00000011994) FNDC9 (ENSECAG00000011980) ITK (ENSECAG00000009530) GARIN3 (ENSECAG00000014747) MED7 (ENSECAG00000004270) HAVCR2 (ENSECAG00000015318) ENSECAG00000016251 SGCD (ENSECAG00000016277) ENSECAG00000052847 Chiroptera ANCESTRAL SPECIES 1 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Microchiroptera ANCESTRAL SPECIES 3 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 Microbat DUPLICATION Microbat MODERN SPECIES 993 ENSMLUG00000002317 SLU7 (ENSMLUG00000003091) FAM200C (ENSMLUG00000003086) C1QTNF2 (ENSMLUG00000003082) CCNJL (ENSMLUG00000003076) FABP6 (ENSMLUG00000003069) PWWP2A (ENSMLUG00000003065) TTC1 (ENSMLUG00000003057) ADRA1B (ENSMLUG00000010123) ENSMLUG00000029937 IL12B (ENSMLUG00000006352) UBLCP1 (ENSMLUG00000006359) RNF145 (ENSMLUG00000004383) ENSMLUG00000025817 ##22 ENSMLUG00000004376 ##22 CLINT1 (ENSMLUG00000015942) LSM11 (ENSMLUG00000015930) THG1L (ENSMLUG00000015926) SOX30 (ENSMLUG00000015904) ADAM19 (ENSMLUG00000015885) NIPAL4 (ENSMLUG00000015875) ENSMLUG00000015832 FNDC9 (ENSMLUG00000015859) ITK (ENSMLUG00000015811) GARIN3 (ENSMLUG00000015805) ENSMLUG00000013259 ENSMLUG00000024956 ENSMLUG00000025738 ENSMLUG00000026567 Microbat MODERN SPECIES 993 ENSMLUG00000002317 SLU7 (ENSMLUG00000003091) FAM200C (ENSMLUG00000003086) C1QTNF2 (ENSMLUG00000003082) CCNJL (ENSMLUG00000003076) FABP6 (ENSMLUG00000003069) PWWP2A (ENSMLUG00000003065) TTC1 (ENSMLUG00000003057) ADRA1B (ENSMLUG00000010123) ENSMLUG00000029937 IL12B (ENSMLUG00000006352) UBLCP1 (ENSMLUG00000006359) RNF145 (ENSMLUG00000004383) ENSMLUG00000025817 ##22 ENSMLUG00000004376 ##22 CLINT1 (ENSMLUG00000015942) LSM11 (ENSMLUG00000015930) THG1L (ENSMLUG00000015926) SOX30 (ENSMLUG00000015904) ADAM19 (ENSMLUG00000015885) NIPAL4 (ENSMLUG00000015875) ENSMLUG00000015832 FNDC9 (ENSMLUG00000015859) ITK (ENSMLUG00000015811) GARIN3 (ENSMLUG00000015805) ENSMLUG00000013259 ENSMLUG00000024956 ENSMLUG00000025738 ENSMLUG00000026567 ENSMLUG00000007378 Greater horseshoe bat MODERN SPECIES 16 ENSRFEG00010018862 SLU7 (ENSRFEG00010018823) FAM200C (ENSRFEG00010018805) C1QTNF2 (ENSRFEG00010018713) CCNJL (ENSRFEG00010018682) FABP6 (ENSRFEG00010018657) PWWP2A (ENSRFEG00010018597) TTC1 (ENSRFEG00010018551) ADRA1B (ENSRFEG00010018512) ENSRFEG00010018474 IL12B (ENSRFEG00010018416) UBLCP1 (ENSRFEG00010018381) ENSRFEG00010018346 RNF145 (ENSRFEG00010018289) ENSRFEG00010018210 EBF1 (ENSRFEG00010018103) ##22 CLINT1 (ENSRFEG00010018014) LSM11 (ENSRFEG00010017961) THG1L (ENSRFEG00010017934) SOX30 (ENSRFEG00010017758) ADAM19 (ENSRFEG00010017696) NIPAL4 (ENSRFEG00010017454) FNDC9 (ENSRFEG00010017433) CYFIP2 (ENSRFEG00010017183) ITK (ENSRFEG00010017117) GARIN3 (ENSRFEG00010017035) MED7 (ENSRFEG00010017016) HAVCR2 (ENSRFEG00010016910) ENSRFEG00010016830 ENSRFEG00010016791 TIMD4 (ENSRFEG00010016766) Megabat MODERN SPECIES 1901 IL12B (ENSPVAG00000006918) UBLCP1 (ENSPVAG00000006917) RNF145 (ENSPVAG00000006915) EBF1 (ENSPVAG00000006914) ##22 Artiodactyla ANCESTRAL SPECIES 8 ENSGT00910000147255 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Suina ANCESTRAL SPECIES 25 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Pig MODERN SPECIES 7 GABRA6 (ENSSSCG00000017027) GABRB2 (ENSSSCG00000033558) ATP10B (ENSSSCG00000021527) ENSSSCG00000017032 SLU7 (ENSSSCG00000017033) FAM200C (ENSSSCG00000038662) C1QTNF2 (ENSSSCG00000035993) CCNJL (ENSSSCG00000017036) FABP6 (ENSSSCG00000017037) ENSSSCG00000017038 TTC1 (ENSSSCG00000040528) ADRA1B (ENSSSCG00000017041) IL12B (ENSSSCG00000017044) UBLCP1 (ENSSSCG00000017042) RNF145 (ENSSSCG00000017043) EBF1 (ENSSSCG00000017046) ##22 ENSSSCG00000048797 CLINT1 (ENSSSCG00000017047) LSM11 (ENSSSCG00000038248) THG1L (ENSSSCG00000036047) SOX30 (ENSSSCG00000017051) ADAM19 (ENSSSCG00000017052) NIPAL4 (ENSSSCG00000017053) CYFIP2 (ENSSSCG00000017054) FNDC9 (ENSSSCG00000017055) ITK (ENSSSCG00000038003) GARIN3 (ENSSSCG00000017057) MED7 (ENSSSCG00000017058) HAVCR2 (ENSSSCG00000028875) ENSSSCG00000017061 TIMD4 (ENSSSCG00000017062) Chacoan peccary MODERN SPECIES 97 GABRA6 (ENSCWAG00000003130) GABRB2 (ENSCWAG00000003174) ATP10B (ENSCWAG00000003280) ENSCWAG00000003355 SLU7 (ENSCWAG00000003364) FAM200C (ENSCWAG00000003381) C1QTNF2 (ENSCWAG00000003388) CCNJL (ENSCWAG00000003396) FABP6 (ENSCWAG00000003401) PWWP2A (ENSCWAG00000003411) TTC1 (ENSCWAG00000003419) ADRA1B (ENSCWAG00000003423) IL12B (ENSCWAG00000003428) UBLCP1 (ENSCWAG00000003434) RNF145 (ENSCWAG00000003440) EBF1 (ENSCWAG00000003463) ##22 ENSCWAG00000003489 CLINT1 (ENSCWAG00000003496) LSM11 (ENSCWAG00000003513) THG1L (ENSCWAG00000003519) SOX30 (ENSCWAG00000003538) ENSCWAG00000003570 ADAM19 (ENSCWAG00000003580) NIPAL4 (ENSCWAG00000003616) CYFIP2 (ENSCWAG00000003746) FNDC9 (ENSCWAG00000006309) ITK (ENSCWAG00000006326) ENSCWAG00000006406 GARIN3 (ENSCWAG00000006421) MED7 (ENSCWAG00000006465) ENSCWAG00000006481 Artiodactyla_a ANCESTRAL SPECIES 7 ENSGT00910000147255 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Artiodactyla_b ANCESTRAL SPECIES 8 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Cetacea ANCESTRAL SPECIES 1 ENSGT00940000155811.n ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00940000169007 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Blue whale MODERN SPECIES 14 MAT2B (ENSBMSG00010009664) ENSBMSG00010009631 TENM2 (ENSBMSG00010009463) WWC1 (ENSBMSG00010009399) RARS1 (ENSBMSG00010009380) FBLL1 (ENSBMSG00010009376) ENSBMSG00010009367 SLIT3 (ENSBMSG00010009303) SPDL1 (ENSBMSG00010009288) INSYN2B (ENSBMSG00010009282) DOCK2 (ENSBMSG00010009215) FOXI1 (ENSBMSG00010009190) C5orf58 (ENSBMSG00010009183) LCP2 (ENSBMSG00010009115) ENSBMSG00010009094 EBF1 (ENSBMSG00010009081) ##22 CLINT1 (ENSBMSG00010009050) LSM11 (ENSBMSG00010009026) THG1L (ENSBMSG00010009018) SOX30 (ENSBMSG00010004167) ADAM19 (ENSBMSG00010004153) NIPAL4 (ENSBMSG00010004139) FNDC9 (ENSBMSG00010004129) CYFIP2 (ENSBMSG00010003470) ITK (ENSBMSG00010003392) MED7 (ENSBMSG00010003374) HAVCR2 (ENSBMSG00010003356) ENSBMSG00010003337 TIMD4 (ENSBMSG00010003320) SGCD (ENSBMSG00010003298) MRPL22 (ENSBMSG00010003280) Odontoceti ANCESTRAL SPECIES 1 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00390000010799.u.b.a.a.b ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000016769.k ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Sperm whale MODERN SPECIES 19 ATP10B (ENSPCTG00005003099) PTTG1 (ENSPCTG00005003059) SLU7 (ENSPCTG00005003036) ZBED8 (ENSPCTG00005003023) C1QTNF2 (ENSPCTG00005003007) CCNJL (ENSPCTG00005002987) FABP6 (ENSPCTG00005002976) PWWP2A (ENSPCTG00005002957) ENSPCTG00005002937 TTC1 (ENSPCTG00005002930) ADRA1B (ENSPCTG00005002916) ENSPCTG00005002907 IL12B (ENSPCTG00005002891) UBLCP1 (ENSPCTG00005002871) RNF145 (ENSPCTG00005002853) EBF1 (ENSPCTG00005002705) ##22 CLINT1 (ENSPCTG00005002580) LSM11 (ENSPCTG00005002548) THG1L (ENSPCTG00005002538) SOX30 (ENSPCTG00005002511) ADAM19 (ENSPCTG00005002484) NIPAL4 (ENSPCTG00005002440) FNDC9 (ENSPCTG00005002414) CYFIP2 (ENSPCTG00005002337) ITK (ENSPCTG00005002239) FAM71B (ENSPCTG00005002221) MED7 (ENSPCTG00005002212) HAVCR2 (ENSPCTG00005002189) ENSPCTG00005002169 TIMD4 (ENSPCTG00005002146) SGCD (ENSPCTG00005002114) Odontoceti_a ANCESTRAL SPECIES 1 ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00390000010799.u.b.a.a.b ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000016769.k ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Dolphin MODERN SPECIES 1524 EBF1 (ENSTTRG00000009929) ##22 Odontoceti_b ANCESTRAL SPECIES 1 ENSGT00940000155811.n ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000016769.k ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00390000017762 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Vaquita MODERN SPECIES 14 ENSPSNG00000012949 ATP10B (ENSPSNG00000013031) ENSPSNG00000013589 SLU7 (ENSPSNG00000013646) FAM200C (ENSPSNG00000013690) C1QTNF2 (ENSPSNG00000013732) CCNJL (ENSPSNG00000013861) FABP6 (ENSPSNG00000013965) PWWP2A (ENSPSNG00000014054) TTC1 (ENSPSNG00000014163) ADRA1B (ENSPSNG00000014285) ENSPSNG00000014336 IL12B (ENSPSNG00000014420) ENSPSNG00000014512 RNF145 (ENSPSNG00000014588) EBF1 (ENSPSNG00000014744) ##22 ENSPSNG00000014992 CLINT1 (ENSPSNG00000009706) LSM11 (ENSPSNG00000009807) THG1L (ENSPSNG00000009859) SOX30 (ENSPSNG00000009931) ADAM19 (ENSPSNG00000010169) NIPAL4 (ENSPSNG00000010278) CYFIP2 (ENSPSNG00000010541) FNDC9 (ENSPSNG00000010777) ITK (ENSPSNG00000010805) GARIN3 (ENSPSNG00000010987) MED7 (ENSPSNG00000011034) HAVCR2 (ENSPSNG00000011059) ENSPSNG00000011086 TIMD4 (ENSPSNG00000011135) Monodontidae ANCESTRAL SPECIES 7 ENSGT00940000155811.n ENSGT00940000159531 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000016769.k ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00890000139472.f.a ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 Beluga whale DUPLICATION Beluga whale DUPLICATION Beluga whale MODERN SPECIES 34 ENSDLEG00000005947 ##22 ENSDLEG00000005918 ##22 ENSDLEG00000005905 CLINT1 (ENSDLEG00000005888) LSM11 (ENSDLEG00000005881) THG1L (ENSDLEG00000005861) SOX30 (ENSDLEG00000005832) ADAM19 (ENSDLEG00000005804) FNDC9 (ENSDLEG00000005794) NIPAL4 (ENSDLEG00000005749) ITK (ENSDLEG00000005711) GARIN3 (ENSDLEG00000005696) MED7 (ENSDLEG00000005691) HAVCR2 (ENSDLEG00000005675) ENSDLEG00000005654 TIMD4 (ENSDLEG00000005638) Beluga whale MODERN SPECIES 34 ENSDLEG00000005947 ##22 ENSDLEG00000005918 ##22 ENSDLEG00000005905 CLINT1 (ENSDLEG00000005888) LSM11 (ENSDLEG00000005881) THG1L (ENSDLEG00000005861) SOX30 (ENSDLEG00000005832) ADAM19 (ENSDLEG00000005804) FNDC9 (ENSDLEG00000005794) NIPAL4 (ENSDLEG00000005749) ITK (ENSDLEG00000005711) GARIN3 (ENSDLEG00000005696) MED7 (ENSDLEG00000005691) HAVCR2 (ENSDLEG00000005675) ENSDLEG00000005654 TIMD4 (ENSDLEG00000005638) SGCD (ENSDLEG00000005608) Beluga whale MODERN SPECIES 26 ENSDLEG00000010628 ##22 HELZ (ENSDLEG00000010531) CACNG1 (ENSDLEG00000010505) CACNG4 (ENSDLEG00000010498) CACNG5 (ENSDLEG00000010480) PRKCA (ENSDLEG00000010412) APOH (ENSDLEG00000010372) ENSDLEG00000010345 CEP112 (ENSDLEG00000010323) AXIN2 (ENSDLEG00000010276) RGS9 (ENSDLEG00000010167) GNA13 (ENSDLEG00000010142) AMZ2 (ENSDLEG00000010114) SLC16A6 (ENSDLEG00000010094) ARSG (ENSDLEG00000010037) WIPI1 (ENSDLEG00000009984) Narwhal DUPLICATION Narwhal MODERN SPECIES 298 ENSMMNG00015005231 ATP10B (ENSMMNG00015005187) ENSMMNG00015005161 SLU7 (ENSMMNG00015005150) FAM200C (ENSMMNG00015005143) C1QTNF2 (ENSMMNG00015005134) CCNJL (ENSMMNG00015005129) FABP6 (ENSMMNG00015005121) PWWP2A (ENSMMNG00015005111) TTC1 (ENSMMNG00015005088) ADRA1B (ENSMMNG00015005081) ENSMMNG00015005070 IL12B (ENSMMNG00015005052) UBLCP1 (ENSMMNG00015005043) RNF145 (ENSMMNG00015005025) EBF1 (ENSMMNG00015004987) ##22 ENSMMNG00015004954 CLINT1 (ENSMMNG00015004936) LSM11 (ENSMMNG00015004581) THG1L (ENSMMNG00015004572) SOX30 (ENSMMNG00015004559) ADAM19 (ENSMMNG00015004529) NIPAL4 (ENSMMNG00015004502) FNDC9 (ENSMMNG00015004485) CYFIP2 (ENSMMNG00015004412) ITK (ENSMMNG00015004353) GARIN3 (ENSMMNG00015004338) MED7 (ENSMMNG00015004331) HAVCR2 (ENSMMNG00015004322) ENSMMNG00015004299 TIMD4 (ENSMMNG00015004278) Narwhal MODERN SPECIES 316 RASD1 (ENSMMNG00015017030) MED9 (ENSMMNG00015017018) NT5M (ENSMMNG00015017003) COPS3 (ENSMMNG00015016943) FLCN (ENSMMNG00015016905) PLD6 (ENSMMNG00015016874) ENSMMNG00015016712 TNFRSF13B (ENSMMNG00015016637) USP22 (ENSMMNG00015016598) DHRS7B (ENSMMNG00015016524) TMEM11 (ENSMMNG00015016487) NATD1 (ENSMMNG00015016459) MAP2K3 (ENSMMNG00015016411) ENSMMNG00015016395 ENSMMNG00015016382 ENSMMNG00015016327 ##22 HELZ (ENSMMNG00015016280) CACNG1 (ENSMMNG00015016229) CACNG4 (ENSMMNG00015016209) CACNG5 (ENSMMNG00015016183) PRKCA (ENSMMNG00015016165) APOH (ENSMMNG00015016142) ENSMMNG00015016114 CEP112 (ENSMMNG00015016024) AXIN2 (ENSMMNG00015015937) ENSMMNG00015015837 ENSMMNG00015015757 GNA13 (ENSMMNG00015015737) ENSMMNG00015015693 SLC16A6 (ENSMMNG00015015658) ARSG (ENSMMNG00015015641) Pecora ANCESTRAL SPECIES ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.c.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.d ENSGT00940000159345.c.a ENSGT00940000159345.c.b.a Yarkand deer MODERN SPECIES 32 ATP10B (ENSCHYG00000018780) ENSCHYG00000018717 ENSCHYG00000018499 FAM200C (ENSCHYG00000018480) C1QTNF2 (ENSCHYG00000018379) CCNJL (ENSCHYG00000018329) FABP6 (ENSCHYG00000018257) PWWP2A (ENSCHYG00000018129) TTC1 (ENSCHYG00000018034) ADRA1B (ENSCHYG00000017986) ENSCHYG00000017898 IL12B (ENSCHYG00000017821) UBLCP1 (ENSCHYG00000017659) RNF145 (ENSCHYG00000017338) ENSCHYG00000017306 EBF1 (ENSCHYG00000016399) ##22 CLINT1 (ENSCHYG00000016060) LSM11 (ENSCHYG00000015958) THG1L (ENSCHYG00000015881) SOX30 (ENSCHYG00000015834) ENSCHYG00000015753 ADAM19 (ENSCHYG00000015589) NIPAL4 (ENSCHYG00000015526) FNDC9 (ENSCHYG00000015510) CYFIP2 (ENSCHYG00000014487) ITK (ENSCHYG00000014169) GARIN3 (ENSCHYG00000014111) MED7 (ENSCHYG00000014070) HAVCR2 (ENSCHYG00000013938) ENSCHYG00000013888 ENSCHYG00000013740 Percora_a ANCESTRAL SPECIES ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.c.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT01030000240140 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155405.ib ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.d.b ENSGT00940000159345.c.a Siberian musk deer MODERN SPECIES 64 SLU7 (ENSMMSG00000005500) FAM200C (ENSMMSG00000005473) ENSMMSG00000005454 C1QTNF2 (ENSMMSG00000005413) CCNJL (ENSMMSG00000005397) FABP6 (ENSMMSG00000005362) PWWP2A (ENSMMSG00000005304) TTC1 (ENSMMSG00000005250) ADRA1B (ENSMMSG00000005230) ENSMMSG00000005198 ENSMMSG00000005162 IL12B (ENSMMSG00000005127) UBLCP1 (ENSMMSG00000005080) RNF145 (ENSMMSG00000004942) ENSMMSG00000004886 EBF1 (ENSMMSG00000004757) ##22 ENSMMSG00000004165 CLINT1 (ENSMMSG00000004140) LSM11 (ENSMMSG00000004127) THG1L (ENSMMSG00000004121) SOX30 (ENSMMSG00000004081) ADAM19 (ENSMMSG00000004015) NIPAL4 (ENSMMSG00000003992) FNDC9 (ENSMMSG00000003985) CYFIP2 (ENSMMSG00000003916) ITK (ENSMMSG00000003869) GARIN3 (ENSMMSG00000003849) MED7 (ENSMMSG00000003843) HAVCR2 (ENSMMSG00000003829) ENSMMSG00000003817 ENSMMSG00000003800 Bovidae ANCESTRAL SPECIES ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.c.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155405.ib ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850.j ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.d.b ENSGT00940000159345.c.a Bovinae ANCESTRAL SPECIES 2 ENSGT00940000154245.A ENSGT00950000185146 ENSGT00940000159531 ENSGT00390000009693.c.a.a.b ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155405.ib ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850.j ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.d.a.b ENSGT00940000159345.d.b Bos ANCESTRAL SPECIES 3 ENSGT00940000154245.A ENSGT00950000185146 ENSGT00940000159531 ENSGT00390000009693.c.a.a.b ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155405.ib ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850.j ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A.g.b ENSGT00940000159345.d.a.b ENSGT00940000159345.d.b Bos_b ANCESTRAL SPECIES 2 ENSGT00940000154245.A ENSGT00950000185146 ENSGT00940000159531 ENSGT00390000009693.c.a.a.b ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155405.ib ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850.j ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A.g.b ENSGT00940000159345.d.a.b.a ENSGT00940000159345.d.a.b.b Hybrid Bos Indicus MODERN SPECIES 26 GABRB2 (ENSBIXG00005025519) ENSBIXG00005006525 ATP10B (ENSBIXG00005025407) ENSBIXG00005025242 SLU7 (ENSBIXG00005025207) FAM200C (ENSBIXG00005025174) C1QTNF2 (ENSBIXG00005025150) PWWP2A (ENSBIXG00005025120) FABP6 (ENSBIXG00005025033) ENSBIXG00005024988 TTC1 (ENSBIXG00005024975) ADRA1B (ENSBIXG00005007707) IL12B (ENSBIXG00005024914) UBLCP1 (ENSBIXG00005024893) RNF145 (ENSBIXG00005024872) EBF1 (ENSBIXG00005024791) ##22 ENSBIXG00005004219 CLINT1 (ENSBIXG00005024646) LSM11 (ENSBIXG00005024573) THG1L (ENSBIXG00005024532) SOX30 (ENSBIXG00005024495) ADAM19 (ENSBIXG00005004170) NIPAL4 (ENSBIXG00005024348) CYFIP2 (ENSBIXG00005024265) FNDC9 (ENSBIXG00005024046) ITK (ENSBIXG00005006285) GARIN3 (ENSBIXG00005023992) MED7 (ENSBIXG00005023975) HAVCR2 (ENSBIXG00005005560) ENSBIXG00005023705 ENSBIXG00005023584 Cow MODERN SPECIES 26 ATP10B (ENSBTAG00000016841) PTTG1 (ENSBTAG00000012184) SLU7 (ENSBTAG00000008457) FAM200C (ENSBTAG00000030282) C1QTNF2 (ENSBTAG00000054287) CCNJL (ENSBTAG00000046343) FABP6 (ENSBTAG00000010632) ENSBTAG00000053260 PWWP2A (ENSBTAG00000010341) TTC1 (ENSBTAG00000010321) ADRA1B (ENSBTAG00000040253) ENSBTAG00000050222 IL12B (ENSBTAG00000004741) UBLCP1 (ENSBTAG00000009103) RNF145 (ENSBTAG00000025099) EBF1 (ENSBTAG00000037508) ##22 ENSBTAG00000050321 CLINT1 (ENSBTAG00000016199) LSM11 (ENSBTAG00000010363) THG1L (ENSBTAG00000010359) SOX30 (ENSBTAG00000020491) ADAM19 (ENSBTAG00000003836) NIPAL4 (ENSBTAG00000020213) CYFIP2 (ENSBTAG00000008916) ITK (ENSBTAG00000000306) GARIN3 (ENSBTAG00000013450) MED7 (ENSBTAG00000050263) HAVCR2 (ENSBTAG00000000495) ENSBTAG00000036102 ENSBTAG00000052849 TIMD4 (ENSBTAG00000013185) Bos_a ANCESTRAL SPECIES 2 ENSGT00940000154245.A ENSGT01030000234975 ENSGT00940000159531 ENSGT00390000009693.c.a.a.b ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155405.ib ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850.j ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000159345.c.a ENSGT00940000159345.c.b.a ENSGT00940000161609 Domestic yak MODERN SPECIES 27 GABRB2 (ENSBGRG00000000613) ENSBGRG00000000592 ATP10B (ENSBGRG00000000552) ENSBGRG00000000492 SLU7 (ENSBGRG00000000435) FAM200C (ENSBGRG00000017873) C1QTNF2 (ENSBGRG00000017808) FABP6 (ENSBGRG00000017725) PWWP2A (ENSBGRG00000017485) TTC1 (ENSBGRG00000017355) ADRA1B (ENSBGRG00000017305) ENSBGRG00000017048 IL12B (ENSBGRG00000016956) UBLCP1 (ENSBGRG00000016766) RNF145 (ENSBGRG00000016333) EBF1 (ENSBGRG00000015942) ##22 ENSBGRG00000015864 CLINT1 (ENSBGRG00000015659) LSM11 (ENSBGRG00000015580) THG1L (ENSBGRG00000015516) SOX30 (ENSBGRG00000015400) ADAM19 (ENSBGRG00000015117) NIPAL4 (ENSBGRG00000015077) FNDC9 (ENSBGRG00000015053) CYFIP2 (ENSBGRG00000014210) ITK (ENSBGRG00000013958) GARIN3 (ENSBGRG00000013910) MED7 (ENSBGRG00000013891) ENSBGRG00000013868 ENSBGRG00000013840 ENSBGRG00000013748 Wild yak MODERN SPECIES 908 ATP10B (ENSBMUG00000003105) ENSBMUG00000003133 SLU7 (ENSBMUG00000003151) FAM200C (ENSBMUG00000003169) C1QTNF2 (ENSBMUG00000003178) CCNJL (ENSBMUG00000003208) FABP6 (ENSBMUG00000003224) TTC1 (ENSBMUG00000003273) ENSBMUG00000003292 ADRA1B (ENSBMUG00000003306) IL12B (ENSBMUG00000003347) UBLCP1 (ENSBMUG00000003374) RNF145 (ENSBMUG00000003491) EBF1 (ENSBMUG00000003714) ##22 American bison MODERN SPECIES 3277 ENSBBBG00000022061 ATP10B (ENSBBBG00000022138) ENSBBBG00000022168 SLU7 (ENSBBBG00000022185) FAM200C (ENSBBBG00000022197) C1QTNF2 (ENSBBBG00000022210) CCNJL (ENSBBBG00000022223) FABP6 (ENSBBBG00000022234) PWWP2A (ENSBBBG00000022277) TTC1 (ENSBBBG00000008670) ADRA1B (ENSBBBG00000005874) ENSBBBG00000022359 IL12B (ENSBBBG00000022374) UBLCP1 (ENSBBBG00000022388) RNF145 (ENSBBBG00000022458) EBF1 (ENSBBBG00000022600) ##22 CLINT1 (ENSBBBG00000022678) LSM11 (ENSBBBG00000022686) THG1L (ENSBBBG00000022697) SOX30 (ENSBBBG00000008131) ADAM19 (ENSBBBG00000022757) NIPAL4 (ENSBBBG00000022791) FNDC9 (ENSBBBG00000005998) CYFIP2 (ENSBBBG00000023290) ITK (ENSBBBG00000023355) GARIN3 (ENSBBBG00000023361) MED7 (ENSBBBG00000023363) ENSBBBG00000006109 ENSBBBG00000023368 ENSBBBG00000008685 TIMD4 (ENSBBBG00000023378) Caprinae ANCESTRAL SPECIES 3 ENSGT00940000156722 ENSGT00940000154245.A ENSGT00940000159531 ENSGT00390000009693.c.a ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00940000159087 ENSGT00390000013517 ENSGT00500000044831.a.a.b.k ENSGT00940000158850.j ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345.d.b ENSGT00940000159345.c.a ENSGT00940000161609 Rambouillet Sheep MODERN SPECIES 21 ENSOARG00020011126 ENSOARG00020011112 ATP10B (ENSOARG00020010158) ENSOARG00020010052 SLU7 (ENSOARG00020009922) FAM200C (ENSOARG00020009899) C1QTNF2 (ENSOARG00020009842) CCNJL (ENSOARG00020009830) FABP6 (ENSOARG00020023698) PWWP2A (ENSOARG00020023655) TTC1 (ENSOARG00020023624) ADRA1B (ENSOARG00020023614) IL12B (ENSOARG00020023587) UBLCP1 (ENSOARG00020023552) RNF145 (ENSOARG00020023486) EBF1 (ENSOARG00020023107) ##22 CLINT1 (ENSOARG00020022979) LSM11 (ENSOARG00020022936) THG1L (ENSOARG00020022916) SOX30 (ENSOARG00020022825) ADAM19 (ENSOARG00020022502) NIPAL4 (ENSOARG00020022329) FNDC9 (ENSOARG00020022298) CYFIP2 (ENSOARG00020021671) ITK (ENSOARG00020021491) GARIN3 (ENSOARG00020021452) MED7 (ENSOARG00020021430) ENSOARG00020021384 ENSOARG00020021239 HAVCR2 (ENSOARG00020021141) ENSOARG00020021113 Goat DUPLICATION Goat MODERN SPECIES 26 GABRA1 (ENSCHIG00000019387) GABRA6 (ENSCHIG00000021600) GABRB2 (ENSCHIG00000024858) ATP10B (ENSCHIG00000024331) ENSCHIG00000027118 SLU7 (ENSCHIG00000013793) C1QTNF2 (ENSCHIG00000009887) CCNJL (ENSCHIG00000019393) FABP6 (ENSCHIG00000013198) PWWP2A (ENSCHIG00000012956) TTC1 (ENSCHIG00000012242) ADRA1B (ENSCHIG00000018230) IL12B (ENSCHIG00000016932) UBLCP1 (ENSCHIG00000027116) RNF145 (ENSCHIG00000020585) ENSCHIG00000024488 ##22 ENSCHIG00000023531 ##22 CLINT1 (ENSCHIG00000022934) LSM11 (ENSCHIG00000019251) THG1L (ENSCHIG00000011287) SOX30 (ENSCHIG00000008308) ADAM19 (ENSCHIG00000005265) NIPAL4 (ENSCHIG00000011672) CYFIP2 (ENSCHIG00000007566) FNDC9 (ENSCHIG00000027181) ITK (ENSCHIG00000027054) GARIN3 (ENSCHIG00000026639) HAVCR2 (ENSCHIG00000017229) ENSCHIG00000012551 ENSCHIG00000026349 ENSCHIG00000024814 Goat MODERN SPECIES 26 GABRA6 (ENSCHIG00000021600) GABRB2 (ENSCHIG00000024858) ATP10B (ENSCHIG00000024331) ENSCHIG00000027118 SLU7 (ENSCHIG00000013793) C1QTNF2 (ENSCHIG00000009887) CCNJL (ENSCHIG00000019393) FABP6 (ENSCHIG00000013198) PWWP2A (ENSCHIG00000012956) TTC1 (ENSCHIG00000012242) ADRA1B (ENSCHIG00000018230) IL12B (ENSCHIG00000016932) UBLCP1 (ENSCHIG00000027116) RNF145 (ENSCHIG00000020585) ENSCHIG00000024488 ##22 ENSCHIG00000023531 ##22 CLINT1 (ENSCHIG00000022934) LSM11 (ENSCHIG00000019251) THG1L (ENSCHIG00000011287) SOX30 (ENSCHIG00000008308) ADAM19 (ENSCHIG00000005265) NIPAL4 (ENSCHIG00000011672) CYFIP2 (ENSCHIG00000007566) FNDC9 (ENSCHIG00000027181) ITK (ENSCHIG00000027054) GARIN3 (ENSCHIG00000026639) HAVCR2 (ENSCHIG00000017229) ENSCHIG00000012551 ENSCHIG00000026349 ENSCHIG00000024814 TIMD4 (ENSCHIG00000021237) Camelidae ANCESTRAL SPECIES 1 ENSGT00390000009693 ENSGT00390000002292.b ENSGT00940000163112 ENSGT00940000159591 ENSGT00940000159349 ENSGT00940000157139 ENSGT00940000157692 ENSGT00940000157213 ENSGT00940000156944 ENSGT00390000012630.A ENSGT00390000010107 ENSGT00940000157281 ENSGT00950000182859.A.a.b.b ##22 ENSGT00940000155650 ENSGT00390000012944 ENSGT00390000011705 ENSGT00940000161042 ENSGT00940000159624 ENSGT00500000044831.a.a.b.k ENSGT00390000013517 ENSGT00940000158850 ENSGT00940000162063 ENSGT00940000154444.B ENSGT00940000154444.A ENSGT00940000159345 ENSGT00940000161609 ENSGT00940000158509 ENSGT00390000002110 Arabian camel DUPLICATION Arabian camel MODERN SPECIES 22 ZFP62 (ENSCDRG00005009945) MGAT1 (ENSCDRG00005009968) ENSCDRG00005010049 SLU7 (ENSCDRG00005010097) FAM200C (ENSCDRG00005010177) C1QTNF2 (ENSCDRG00005010201) CCNJL (ENSCDRG00005010257) FABP6 (ENSCDRG00005010314) PWWP2A (ENSCDRG00005010394) TTC1 (ENSCDRG00005010479) ADRA1B (ENSCDRG00005010528) IL12B (ENSCDRG00005010575) UBLCP1 (ENSCDRG00005010616) RNF145 (ENSCDRG00005000036) ENSCDRG00005000046 ##22 ENSCDRG00005000065 ##22 CLINT1 (ENSCDRG00005000098) LSM11 (ENSCDRG00005000153) THG1L (ENSCDRG00005000166) ENSCDRG00005000206 ADAM19 (ENSCDRG00005000255) CYFIP2 (ENSCDRG00005000418) FNDC9 (ENSCDRG00005000691) ITK (ENSCDRG00005000713) ENSCDRG00005000731 MED7 (ENSCDRG00005000741) ENSCDRG00005000754 ENSCDRG00005000763 ENSCDRG00005000772 TIMD4 (ENSCDRG00005000785) SGCD (ENSCDRG00005000807) Arabian camel MODERN SPECIES 22 BTNL9 (ENSCDRG00005009893) ZFP62 (ENSCDRG00005009945) MGAT1 (ENSCDRG00005009968) ENSCDRG00005010049 SLU7 (ENSCDRG00005010097) FAM200C (ENSCDRG00005010177) C1QTNF2 (ENSCDRG00005010201) CCNJL (ENSCDRG00005010257) FABP6 (ENSCDRG00005010314) PWWP2A (ENSCDRG00005010394) TTC1 (ENSCDRG00005010479) ADRA1B (ENSCDRG00005010528) IL12B (ENSCDRG00005010575) UBLCP1 (ENSCDRG00005010616) RNF145 (ENSCDRG00005000036) ENSCDRG00005000046 ##22 ENSCDRG00005000065 ##22 CLINT1 (ENSCDRG00005000098) LSM11 (ENSCDRG00005000153) THG1L (ENSCDRG00005000166) ENSCDRG00005000206 ADAM19 (ENSCDRG00005000255) CYFIP2 (ENSCDRG00005000418) FNDC9 (ENSCDRG00005000691) ITK (ENSCDRG00005000713) ENSCDRG00005000731 MED7 (ENSCDRG00005000741) ENSCDRG00005000754 ENSCDRG00005000763 ENSCDRG00005000772 TIMD4 (ENSCDRG00005000785) Alpaca MODERN SPECIES 1583 IL12B (ENSVPAG00000001732) UBLCP1 (ENSVPAG00000001731) RNF145 (ENSVPAG00000001730) EBF1 (ENSVPAG00000001729) ##22 Vertebrata ANCESTRAL SPECIES ENSGT00950000182859.A.b ##22 Cyclostomata ANCESTRAL SPECIES 91 ENSGT00940000160317 ENSGT00940000153534.B ENSGT00390000012944 ENSGT00950000182859.A.b ##22 Hagfish DUPLICATION Hagfish MODERN SPECIES 190 ENSEBUG00000013927 ENSEBUG00000004048 pi4k2b (ENSEBUG00000008182) nagk (ENSEBUG00000002404) ENSEBUG00000009700 ENSEBUG00000005812 ENSEBUG00000010369 gck (ENSEBUG00000003343) ENSEBUG00000015446 ENSEBUG00000005746 ENSEBUG00000003991 mfsd13a (ENSEBUG00000016045) nop56 (ENSEBUG00000004487) ENSEBUG00000017072 ENSEBUG00000016457 ##22 ENSEBUG00000010537 ##22 Hagfish MODERN SPECIES 190 ENSEBUG00000013927 ENSEBUG00000004048 pi4k2b (ENSEBUG00000008182) nagk (ENSEBUG00000002404) ENSEBUG00000009700 ENSEBUG00000005812 ENSEBUG00000010369 gck (ENSEBUG00000003343) ENSEBUG00000015446 ENSEBUG00000005746 ENSEBUG00000003991 mfsd13a (ENSEBUG00000016045) nop56 (ENSEBUG00000004487) ENSEBUG00000017072 ENSEBUG00000016457 ##22 ENSEBUG00000010537 ##22 Lamprey MODERN SPECIES 191 PWWP2B (ENSPMAG00000003044) ENSPMAG00000003045 psmd4a (ENSPMAG00000003046) HTR4 (ENSPMAG00000003070) ENSPMAG00000003080 IDUA (ENSPMAG00000003105) SLC26A2 (ENSPMAG00000003117) gck (ENSPMAG00000003141) ENSPMAG00000003177 mfsd13a (ENSPMAG00000003182) nop56 (ENSPMAG00000003197) ENSPMAG00000003279 ebf3a (ENSPMAG00000003287) ##22 EBF1 (ENSPMAG00000003301) ##22 Gnathostomata ANCESTRAL SPECIES 10 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00990000208599 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000154314 #24 ENSGT00940000156570 ENSGT00850000132319.b ENSGT00940000161176 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00960000192669 ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Elephant shark MODERN SPECIES 1488 ENSCMIG00000017679 ENSCMIG00000017676 valopb (ENSCMIG00000017618) ENSCMIG00000017598 nkx6.2 (ENSCMIG00000017595) INPP5A (ENSCMIG00000017585) PWWP2B (ENSCMIG00000017576) ENSCMIG00000017573 STK32C (ENSCMIG00000017561) ENSCMIG00000017508 ##16 JAKMIP3 (ENSCMIG00000017490) bnip3 (ENSCMIG00000017485) ##19 ppp2r2d (ENSCMIG00000017459) ##21 ENSCMIG00000017440 glrx3 (ENSCMIG00000017434) ebf3a (ENSCMIG00000017412) ##22 MGMT (ENSCMIG00000017399) ENSCMIG00000017396 #23 ptpreb (ENSCMIG00000017337) CLRN3 (ENSCMIG00000017310) FOXI2 (ENSCMIG00000017306) INSYN2A (ENSCMIG00000017301) ENSCMIG00000017297 ENSCMIG00000017295 ENSCMIG00000017294 Euteleostomi ANCESTRAL SPECIES 4 ENSGT00940000164278 ENSGT00570000079216 ENSGT00990000208599 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Sarcopterygii ANCESTRAL SPECIES 13 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974 ENSGT00530000063787.B ENSGT00990000210288 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Tetrapoda ANCESTRAL SPECIES 17 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Anura ANCESTRAL SPECIES 130 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000171499 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Frog MODERN SPECIES 7 inpp5a.1 (ENSXETG00000023608) ENSXETG00000047082 pwwp2b (ENSXETG00000030285) lrrc27 (ENSXETG00000039416) stk32c (ENSXETG00000033094) ENSXETG00000039001 dpysl4 (ENSXETG00000023585) ##16 jakmip3 (ENSXETG00000005443) bnip3 (ENSXETG00000025214) ##19 ppp2r2d (ENSXETG00000005442) ##21 tcerg1l (ENSXETG00000005440) ENSXETG00000049413 ENSXETG00000039998 ENSXETG00000036406 glrx3 (ENSXETG00000011308) ebf3 (ENSXETG00000011309) ##22 mgmt (ENSXETG00000025209) ENSXETG00000045223 ##17 mki67 (ENSXETG00000005185) #23 ptpre (ENSXETG00000005190) clrn3 (ENSXETG00000046844) ENSXETG00000044270 foxi2 (ENSXETG00000044570) NPS (ENSXETG00000045080) dock1 (ENSXETG00000005204) insyn2a (ENSXETG00000005213) ENSXETG00000048958 c10orf90 (ENSXETG00000036473) adam12 (ENSXETG00000022538) fank1 (ENSXETG00000022551) dhx32 (ENSXETG00000022554) Leishan spiny toad MODERN SPECIES 9 ENSLLEG00000027296 NKX6-2 (ENSLLEG00000027241) INPP5A (ENSLLEG00000027113) PWWP2B (ENSLLEG00000027069) ENSLLEG00000027036 LRRC27 (ENSLLEG00000026967) ENSLLEG00000026958 STK32C (ENSLLEG00000026880) DPYSL4 (ENSLLEG00000026701) ##16 ENSLLEG00000026676 JAKMIP3 (ENSLLEG00000026112) BNIP3 (ENSLLEG00000026060) ##19 PPP2R2D (ENSLLEG00000024968) ##21 TCERG1L (ENSLLEG00000024833) GLRX3 (ENSLLEG00000024784) EBF3 (ENSLLEG00000024426) ##22 ENSLLEG00000024390 MGMT (ENSLLEG00000024235) ENSLLEG00000024180 ENSLLEG00000022358 PTPRE (ENSLLEG00000021953) CLRN3 (ENSLLEG00000021898) NPS (ENSLLEG00000021867) INSYN2A (ENSLLEG00000021802) DOCK1 (ENSLLEG00000019899) ENSLLEG00000019812 ENSLLEG00000019520 ADAM12 (ENSLLEG00000018984) FANK1 (ENSLLEG00000018784) ENSLLEG00000018754 DHX32 (ENSLLEG00000018646) Amniota ANCESTRAL SPECIES 10 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Mammalia ANCESTRAL SPECIES 14 ENSGT00940000163757 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Platypus MODERN SPECIES 14 KNDC1 (ENSOANG00000043430) ENSOANG00000037554 ENSOANG00000031751 ENSOANG00000030741 ENSOANG00000045525 INPP5A (ENSOANG00000047999) PWWP2B (ENSOANG00000048527) STK32C (ENSOANG00000028820) ENSOANG00000043295 DPYSL4 (ENSOANG00000012014) ##16 JAKMIP3 (ENSOANG00000040987) BNIP3 (ENSOANG00000047658) ##19 PPP2R2D (ENSOANG00000020812) ##21 TCERG1L (ENSOANG00000028768) GLRX3 (ENSOANG00000044992) EBF3 (ENSOANG00000037915) ##22 ENSOANG00000028957 ENSOANG00000031651 #23 PTPRE (ENSOANG00000046456) CLRN3 (ENSOANG00000042939) ENSOANG00000040902 DOCK1 (ENSOANG00000039339) ENSOANG00000046973 ENSOANG00000051023 ENSOANG00000013089 ENSOANG00000041965 DHX32 (ENSOANG00000041449) BCCIP (ENSOANG00000002143) UROS (ENSOANG00000042305) MMP21 (ENSOANG00000005237) EDRF1 (ENSOANG00000014188) Theria ANCESTRAL SPECIES 26 ENSGT00940000163757 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Eutheria ANCESTRAL SPECIES 13 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Boreoeutheria ANCESTRAL SPECIES 16 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Laurasiatheria ANCESTRAL SPECIES 14 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Laurasiatheria_a ANCESTRAL SPECIES 15 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Artiodactyla ANCESTRAL SPECIES 14 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Suina ANCESTRAL SPECIES 6 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Pig MODERN SPECIES 5 ENSSSCG00000010770 ENSSSCG00000056661 ADGRA1 (ENSSSCG00000039199) CFAP46 (ENSSSCG00000010768) NKX6-2 (ENSSSCG00000036098) INPP5A (ENSSSCG00000010765) PWWP2B (ENSSSCG00000023681) LRRC27 (ENSSSCG00000010764) STK32C (ENSSSCG00000010761) DPYSL4 (ENSSSCG00000010762) ##16 JAKMIP3 (ENSSSCG00000024633) BNIP3 (ENSSSCG00000024388) ##19 TCERG1L (ENSSSCG00000037698) GLRX3 (ENSSSCG00000010759) C10orf143 (ENSSSCG00000040426) EBF3 (ENSSSCG00000010757) ##22 ENSSSCG00000049746 MGMT (ENSSSCG00000010756) ENSSSCG00000026302 ##23 PTPRE (ENSSSCG00000010755) CLRN3 (ENSSSCG00000010753) FOXI2 (ENSSSCG00000010752) NPS (ENSSSCG00000053344) INSYN2A (ENSSSCG00000031345) DOCK1 (ENSSSCG00000035045) C10orf90 (ENSSSCG00000010747) ADAM12 (ENSSSCG00000010746) FANK1 (ENSSSCG00000010745) DHX32 (ENSSSCG00000010744) BCCIP (ENSSSCG00000010743) UROS (ENSSSCG00000010742) Chacoan peccary MODERN SPECIES 955 PWWP2B (ENSCWAG00000014700) LRRC27 (ENSCWAG00000014723) STK32C (ENSCWAG00000014807) DPYSL4 (ENSCWAG00000014932) ##16 JAKMIP3 (ENSCWAG00000015132) BNIP3 (ENSCWAG00000015611) ##19 TCERG1L (ENSCWAG00000015640) GLRX3 (ENSCWAG00000015740) C10orf143 (ENSCWAG00000015773) ENSCWAG00000015800 EBF3 (ENSCWAG00000015830) ##22 MGMT (ENSCWAG00000015990) PTPRE (ENSCWAG00000016042) CLRN3 (ENSCWAG00000016340) FOXI2 (ENSCWAG00000016377) NPS (ENSCWAG00000016401) DOCK1 (ENSCWAG00000016450) INSYN2A (ENSCWAG00000016657) C10orf90 (ENSCWAG00000016711) ADAM12 (ENSCWAG00000016814) FANK1 (ENSCWAG00000016853) DHX32 (ENSCWAG00000016967) BCCIP (ENSCWAG00000017003) UROS (ENSCWAG00000017033) EDRF1 (ENSCWAG00000017083) TEX36 (ENSCWAG00000017160) Artiodactyla_a ANCESTRAL SPECIES 14 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Camelidae ANCESTRAL SPECIES 86 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 Arabian camel MODERN SPECIES 2 ADGRA1 (ENSCDRG00005002754) CFAP46 (ENSCDRG00005002787) NKX6-2 (ENSCDRG00005002826) INPP5A (ENSCDRG00005002849) PWWP2B (ENSCDRG00005002919) ENSCDRG00005002934 STK32C (ENSCDRG00005002957) DPYSL4 (ENSCDRG00005003012) ##16 JAKMIP3 (ENSCDRG00005003118) BNIP3 (ENSCDRG00005003317) ##19 ENSCDRG00005003334 ##21 ENSCDRG00005003355 ##21 TCERG1L (ENSCDRG00005003400) GLRX3 (ENSCDRG00005003562) C10orf143 (ENSCDRG00005003714) EBF3 (ENSCDRG00005003771) ##22 MGMT (ENSCDRG00005003964) PTPRE (ENSCDRG00005004037) CLRN3 (ENSCDRG00005004265) FOXI2 (ENSCDRG00005004278) NPS (ENSCDRG00005004297) DOCK1 (ENSCDRG00005004338) INSYN2A (ENSCDRG00005004466) C10orf90 (ENSCDRG00005004532) ADAM12 (ENSCDRG00005004626) FANK1 (ENSCDRG00005006185) DHX32 (ENSCDRG00005006268) BCCIP (ENSCDRG00005006346) UROS (ENSCDRG00005006451) EDRF1 (ENSCDRG00005006537) TEX36 (ENSCDRG00005006718) Artiodactyla_b ANCESTRAL SPECIES 13 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Cetacea ANCESTRAL SPECIES 15 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT01010000228728 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Odontoceti ANCESTRAL SPECIES 14 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT01010000228728 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Odontoceti_a ANCESTRAL SPECIES 11 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT01010000228728 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Odontoceti_b ANCESTRAL SPECIES 14 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT01010000228728 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Monodontidae ANCESTRAL SPECIES 14 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT01010000228728 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Narwhal MODERN SPECIES 311 ADGRA1 (ENSMMNG00015014522) CFAP46 (ENSMMNG00015014497) NKX6-2 (ENSMMNG00015014478) INPP5A (ENSMMNG00015014462) PWWP2B (ENSMMNG00015014447) ENSMMNG00015014437 STK32C (ENSMMNG00015014425) DPYSL4 (ENSMMNG00015014400) ##16 JAKMIP3 (ENSMMNG00015014358) BNIP3 (ENSMMNG00015014341) ##19 PPP2R2D (ENSMMNG00015014307) ##21 ENSMMNG00015014293 TCERG1L (ENSMMNG00015014276) GLRX3 (ENSMMNG00015014249) C10orf143 (ENSMMNG00015014227) EBF3 (ENSMMNG00015014202) ##22 ENSMMNG00015014185 ENSMMNG00015014154 ##23 PTPRE (ENSMMNG00015014091) CLRN3 (ENSMMNG00015014067) FOXI2 (ENSMMNG00015014054) NPS (ENSMMNG00015014047) INSYN2A (ENSMMNG00015014035) DOCK1 (ENSMMNG00015013945) C10orf90 (ENSMMNG00015013894) ADAM12 (ENSMMNG00015013858) FANK1 (ENSMMNG00015013830) DHX32 (ENSMMNG00015013805) BCCIP (ENSMMNG00015013777) ENSMMNG00015013747 EDRF1 (ENSMMNG00015013719) Beluga whale MODERN SPECIES 65 KNDC1 (ENSDLEG00000009075) ADGRA1 (ENSDLEG00000009344) CFAP46 (ENSDLEG00000009376) NKX6-2 (ENSDLEG00000009425) INPP5A (ENSDLEG00000009450) PWWP2B (ENSDLEG00000009513) ENSDLEG00000009526 STK32C (ENSDLEG00000009552) DPYSL4 (ENSDLEG00000009576) ##16 JAKMIP3 (ENSDLEG00000009617) BNIP3 (ENSDLEG00000009706) ##19 PPP2R2D (ENSDLEG00000009738) ##21 TCERG1L (ENSDLEG00000009952) GLRX3 (ENSDLEG00000010019) ENSDLEG00000010080 EBF3 (ENSDLEG00000010101) ##22 MGMT (ENSDLEG00000010162) ENSDLEG00000010179 ##23 PTPRE (ENSDLEG00000010238) CLRN3 (ENSDLEG00000010291) FOXI2 (ENSDLEG00000010310) DOCK1 (ENSDLEG00000011005) FAM196A (ENSDLEG00000019456) ADAM12 (ENSDLEG00000019463) ENSDLEG00000019506 DHX32 (ENSDLEG00000019517) BCCIP (ENSDLEG00000019523) UROS (ENSDLEG00000019535) EDRF1 (ENSDLEG00000019607) ENSDLEG00000019627 CTBP2 (ENSDLEG00000019641) Vaquita MODERN SPECIES 7 ADGRA1 (ENSPSNG00000013734) CFAP46 (ENSPSNG00000012590) NKX6-2 (ENSPSNG00000012461) INPP5A (ENSPSNG00000012400) PWWP2B (ENSPSNG00000012352) ENSPSNG00000012321 STK32C (ENSPSNG00000012184) DPYSL4 (ENSPSNG00000012114) ##16 JAKMIP3 (ENSPSNG00000009865) BNIP3 (ENSPSNG00000009412) ##19 PPP2R2D (ENSPSNG00000009366) ##21 TCERG1L (ENSPSNG00000009305) ENSPSNG00000009253 GLRX3 (ENSPSNG00000009239) C10orf143 (ENSPSNG00000009170) EBF3 (ENSPSNG00000009038) ##22 MGMT (ENSPSNG00000008978) ENSPSNG00000008949 ##23 PTPRE (ENSPSNG00000008721) CLRN3 (ENSPSNG00000008648) FOXI2 (ENSPSNG00000008601) NPS (ENSPSNG00000008571) INSYN2A (ENSPSNG00000008515) DOCK1 (ENSPSNG00000006308) C10orf90 (ENSPSNG00000005546) ADAM12 (ENSPSNG00000005500) FANK1 (ENSPSNG00000005421) DHX32 (ENSPSNG00000005385) BCCIP (ENSPSNG00000005355) ENSPSNG00000005318 EDRF1 (ENSPSNG00000005270) Dolphin MODERN SPECIES 4922 GLRX3 (ENSTTRG00000014011) EBF3 (ENSTTRG00000014010) ##22 Sperm whale MODERN SPECIES 12 ADGRA1 (ENSPCTG00005018343) ENSPCTG00005018247 ENSPCTG00005018115 NKX6-2 (ENSPCTG00005018073) INPP5A (ENSPCTG00005017939) PWWP2B (ENSPCTG00005017862) ENSPCTG00005017844 STK32C (ENSPCTG00005017636) DPYSL4 (ENSPCTG00005017498) ##16 JAKMIP3 (ENSPCTG00005014662) BNIP3 (ENSPCTG00005014507) ##19 PPP2R2D (ENSPCTG00005014368) ##21 TCERG1L (ENSPCTG00005014191) GLRX3 (ENSPCTG00005014117) C10orf143 (ENSPCTG00005014070) EBF3 (ENSPCTG00005014004) ##22 MGMT (ENSPCTG00005013913) MKI67 (ENSPCTG00005013837) ##23 PTPRE (ENSPCTG00005013394) ENSPCTG00005013336 CLRN3 (ENSPCTG00005013268) FOXI2 (ENSPCTG00005013187) NPS (ENSPCTG00005013108) ENSPCTG00005013009 INSYN2A (ENSPCTG00005012937) ENSPCTG00005006686 C10orf90 (ENSPCTG00005006168) ADAM12 (ENSPCTG00005005893) ENSPCTG00005005820 FANK1 (ENSPCTG00005005751) DHX32 (ENSPCTG00005005668) Blue whale MODERN SPECIES 7 ENSBMSG00010012540 ADGRA1 (ENSBMSG00010012588) CFAP46 (ENSBMSG00010012679) NKX6-2 (ENSBMSG00010012788) INPP5A (ENSBMSG00010012829) PWWP2B (ENSBMSG00010012889) ENSBMSG00010012899 STK32C (ENSBMSG00010012924) DPYSL4 (ENSBMSG00010012951) ##16 JAKMIP3 (ENSBMSG00010013025) BNIP3 (ENSBMSG00010013153) ##19 PPP2R2D (ENSBMSG00010013169) ##21 TCERG1L (ENSBMSG00010013192) GLRX3 (ENSBMSG00010013218) C10orf143 (ENSBMSG00010013248) EBF3 (ENSBMSG00010013271) ##22 MGMT (ENSBMSG00010013292) PTPRE (ENSBMSG00010013338) ENSBMSG00010013407 CLRN3 (ENSBMSG00010013416) FOXI2 (ENSBMSG00010013441) NPS (ENSBMSG00010013450) DOCK1 (ENSBMSG00010013502) ENSBMSG00010013567 INSYN2A (ENSBMSG00010013574) C10orf90 (ENSBMSG00010013589) ADAM12 (ENSBMSG00010013613) FANK1 (ENSBMSG00010013642) DHX32 (ENSBMSG00010013653) BCCIP (ENSBMSG00010013666) ENSBMSG00010013691 Pecora ANCESTRAL SPECIES 12 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 917 ENSCHYG00000020664 ##22 Yarkand deer MODERN SPECIES 6 MTG1 (ENSCHYG00000014091) SPRN (ENSCHYG00000014062) ENSCHYG00000014027 ENSCHYG00000014004 ENSCHYG00000013910 ENSCHYG00000013872 ENSCHYG00000013675 ENSCHYG00000013635 CYP2E1 (ENSCHYG00000013527) SYCE1 (ENSCHYG00000013435) JAKMIP3 (ENSCHYG00000020375) BNIP3 (ENSCHYG00000020255) ##19 TCERG1L (ENSCHYG00000020121) ENSCHYG00000020068 C10orf143 (ENSCHYG00000020032) EBF3 (ENSCHYG00000019883) ##22 MGMT (ENSCHYG00000019691) ENSCHYG00000019405 ##23 PTPRE (ENSCHYG00000018913) CLRN3 (ENSCHYG00000018803) FOXI2 (ENSCHYG00000018763) NPS (ENSCHYG00000018729) INSYN2A (ENSCHYG00000018674) DOCK1 (ENSCHYG00000017579) C10orf90 (ENSCHYG00000017370) ADAM12 (ENSCHYG00000016986) FANK1 (ENSCHYG00000016654) DHX32 (ENSCHYG00000016539) BCCIP (ENSCHYG00000016427) UROS (ENSCHYG00000016089) EDRF1 (ENSCHYG00000015642) Percora_a ANCESTRAL SPECIES 14 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Bovidae ANCESTRAL SPECIES 24 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Bovinae ANCESTRAL SPECIES 22 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00440000038430.j.b ENSGT00940000157227 ENSGT00390000000696 Bos ANCESTRAL SPECIES 23 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00440000038430.j.b ENSGT00940000157227 ENSGT00390000000696 Bos_b ANCESTRAL SPECIES 23 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000162309.l.b ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Hybrid Bos Indicus MODERN SPECIES 18 ADGRA1 (ENSBIXG00005004243) ENSBIXG00005024779 ENSBIXG00005024693 NKX6-2 (ENSBIXG00005024654) INPP5A (ENSBIXG00005024629) ENSBIXG00005024612 PWWP2B (ENSBIXG00005024592) LRRC27 (ENSBIXG00005024580) STK32C (ENSBIXG00005024546) DPYSL4 (ENSBIXG00005006849) ##16 JAKMIP3 (ENSBIXG00005004174) BNIP3 (ENSBIXG00005024320) ##19 TCERG1L (ENSBIXG00005024254) GLRX3 (ENSBIXG00005024234) C10orf143 (ENSBIXG00005004129) EBF3 (ENSBIXG00005006678) ##22 ENSBIXG00005024056 ENSBIXG00005024025 ENSBIXG00005023966 ##23 PTPRE (ENSBIXG00005023896) CLRN3 (ENSBIXG00005004054) FOXI2 (ENSBIXG00005023664) NPS (ENSBIXG00005004046) DOCK1 (ENSBIXG00005006170) INSYN2A (ENSBIXG00005023556) C10orf90 (ENSBIXG00005023511) ADAM12 (ENSBIXG00005023445) FANK1 (ENSBIXG00005023337) DHX32 (ENSBIXG00005023271) BCCIP (ENSBIXG00005023242) UROS (ENSBIXG00005003948) Cow MODERN SPECIES 18 BNIP3 (ENSBTAG00000017804) ##19 ENSBTAG00000054967 INPP5A (ENSBTAG00000009181) NKX6-2 (ENSBTAG00000054665) ENSBTAG00000015651 ENSBTAG00000019919 ADGRA1 (ENSBTAG00000005965) ENSBTAG00000049317 ENSBTAG00000007248 OR12J2 (ENSBTAG00000010461) OR13A29 (ENSBTAG00000005267) CYP2E1 (ENSBTAG00000018365) SYCE1 (ENSBTAG00000035072) GLRX3 (ENSBTAG00000005027) ENSBTAG00000051402 EBF3 (ENSBTAG00000008272) ##22 MGMT (ENSBTAG00000050386) MKI67 (ENSBTAG00000002444) ##23 PTPRE (ENSBTAG00000002435) CLRN3 (ENSBTAG00000047054) FOXI2 (ENSBTAG00000006218) NPS (ENSBTAG00000054311) INSYN2A (ENSBTAG00000021015) DOCK1 (ENSBTAG00000031890) C26H10orf90 (ENSBTAG00000011587) ADAM12 (ENSBTAG00000012444) FANK1 (ENSBTAG00000022917) DHX32 (ENSBTAG00000005795) BCCIP (ENSBTAG00000005792) UROS (ENSBTAG00000005791) EDRF1 (ENSBTAG00000009439) Bos_a ANCESTRAL SPECIES 17 ENSGT00940000158585 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00440000038430.j.b ENSGT00940000157227 ENSGT00390000000696 Domestic yak MODERN SPECIES 17 ADGRA1 (ENSBGRG00000014789) ENSBGRG00000014069 NKX6-2 (ENSBGRG00000014013) ENSBGRG00000013970 INPP5A (ENSBGRG00000013323) PWWP2B (ENSBGRG00000013296) ENSBGRG00000013267 STK32C (ENSBGRG00000013147) DPYSL4 (ENSBGRG00000013046) ##16 JAKMIP3 (ENSBGRG00000012854) BNIP3 (ENSBGRG00000012784) ##19 ENSBGRG00000012763 TCERG1L (ENSBGRG00000012603) GLRX3 (ENSBGRG00000012497) C10orf143 (ENSBGRG00000012383) EBF3 (ENSBGRG00000012066) ##22 ENSBGRG00000011844 PTPRE (ENSBGRG00000010693) CLRN3 (ENSBGRG00000010595) FOXI2 (ENSBGRG00000010559) NPS (ENSBGRG00000010509) INSYN2A (ENSBGRG00000010474) DOCK1 (ENSBGRG00000009636) ENSBGRG00000009554 ENSBGRG00000009507 ADAM12 (ENSBGRG00000009261) FANK1 (ENSBGRG00000009041) DHX32 (ENSBGRG00000008932) BCCIP (ENSBGRG00000008827) UROS (ENSBGRG00000008669) EDRF1 (ENSBGRG00000008073) Wild yak MODERN SPECIES 1650 EBF3 (ENSBMUG00000023534) ##22 ENSBMUG00000023763 American bison MODERN SPECIES 3316 CFAP46 (ENSBBBG00000012308) INPP5A (ENSBBBG00000012234) ENSBBBG00000012224 ENSBBBG00000012219 STK32C (ENSBBBG00000012214) DPYSL4 (ENSBBBG00000012159) ##16 JAKMIP3 (ENSBBBG00000012095) BNIP3 (ENSBBBG00000002270) ##19 TCERG1L (ENSBBBG00000002262) GLRX3 (ENSBBBG00000012049) ENSBBBG00000012037 EBF3 (ENSBBBG00000012002) ##22 ENSBBBG00000011695 ENSBBBG00000007445 ##23 PTPRE (ENSBBBG00000008730) CLRN3 (ENSBBBG00000002139) FOXI2 (ENSBBBG00000011620) NPS (ENSBBBG00000011609) DOCK1 (ENSBBBG00000002133) INSYN2A (ENSBBBG00000002111) C10orf90 (ENSBBBG00000011501) ADAM12 (ENSBBBG00000011479) FANK1 (ENSBBBG00000011445) ENSBBBG00000011431 DHX32 (ENSBBBG00000011428) BCCIP (ENSBBBG00000011417) UROS (ENSBBBG00000007119) Caprinae ANCESTRAL SPECIES 19 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Goat MODERN SPECIES 18 KNDC1 (ENSCHIG00000020129) ADGRA1 (ENSCHIG00000018897) ENSCHIG00000012050 NKX6-2 (ENSCHIG00000001574) INPP5A (ENSCHIG00000016158) PWWP2B (ENSCHIG00000019754) ENSCHIG00000015848 STK32C (ENSCHIG00000000181) DPYSL4 (ENSCHIG00000000327) ##16 JAKMIP3 (ENSCHIG00000016531) BNIP3 (ENSCHIG00000016843) ##19 ENSCHIG00000022599 TCERG1L (ENSCHIG00000017198) GLRX3 (ENSCHIG00000021582) C10orf143 (ENSCHIG00000016753) EBF3 (ENSCHIG00000019232) ##22 MGMT (ENSCHIG00000015723) ENSCHIG00000023816 ##23 PTPRE (ENSCHIG00000019502) CLRN3 (ENSCHIG00000013085) FOXI2 (ENSCHIG00000010172) NPS (ENSCHIG00000027111) DOCK1 (ENSCHIG00000019621) INSYN2A (ENSCHIG00000010868) C10orf90 (ENSCHIG00000018126) ADAM12 (ENSCHIG00000011552) FANK1 (ENSCHIG00000015691) DHX32 (ENSCHIG00000000489) ENSCHIG00000016594 UROS (ENSCHIG00000022204) EDRF1 (ENSCHIG00000011117) Rambouillet Sheep MODERN SPECIES 14 TUBGCP2 (ENSOARG00020008852) UTF1 (ENSOARG00020008658) ENSOARG00020008649 ENSOARG00020008632 ADGRA1 (ENSOARG00020007761) NKX6-2 (ENSOARG00020007384) PWWP2B (ENSOARG00020007359) ENSOARG00020007280 STK32C (ENSOARG00020007135) DPYSL4 (ENSOARG00020006880) ##16 JAKMIP3 (ENSOARG00020006692) ENSOARG00020006591 ##19 TCERG1L (ENSOARG00020006373) GLRX3 (ENSOARG00020025315) C10orf143 (ENSOARG00020025310) EBF3 (ENSOARG00020025277) ##22 ENSOARG00020025247 PTPRE (ENSOARG00020025091) CLRN3 (ENSOARG00020025052) FOXI2 (ENSOARG00020025039) NPS (ENSOARG00020025028) ENSOARG00020024984 DOCK1 (ENSOARG00020024201) ADAM12 (ENSOARG00020023949) FANK1 (ENSOARG00020023878) DHX32 (ENSOARG00020023821) ENSOARG00020023799 UROS (ENSOARG00020023759) EDRF1 (ENSOARG00020023473) TEX36 (ENSOARG00020023414) CTBP2 (ENSOARG00020023317) Siberian musk deer MODERN SPECIES 1161 INPP5A (ENSMMSG00000023299) NKX6-2 (ENSMMSG00000023329) PWWP2B (ENSMMSG00000023333) ENSMMSG00000023338 STK32C (ENSMMSG00000023344) DPYSL4 (ENSMMSG00000007003) ##16 JAKMIP3 (ENSMMSG00000007336) BNIP3 (ENSMMSG00000011312) ##19 ENSMMSG00000011334 TCERG1L (ENSMMSG00000011373) GLRX3 (ENSMMSG00000011426) C10orf143 (ENSMMSG00000011451) EBF3 (ENSMMSG00000011478) ##22 MGMT (ENSMMSG00000011595) ENSMMSG00000011615 ##23 PTPRE (ENSMMSG00000011664) CLRN3 (ENSMMSG00000011863) FOXI2 (ENSMMSG00000011887) NPS (ENSMMSG00000011905) DOCK1 (ENSMMSG00000011948) INSYN2A (ENSMMSG00000011995) C10orf90 (ENSMMSG00000012019) ADAM12 (ENSMMSG00000012083) ENSMMSG00000012153 FANK1 (ENSMMSG00000012169) DHX32 (ENSMMSG00000012210) ENSMMSG00000012243 UROS (ENSMMSG00000012288) Laurasiatheria_b ANCESTRAL SPECIES 15 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Carnivora ANCESTRAL SPECIES 16 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Felidae ANCESTRAL SPECIES 14 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00990000214258 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Panthera ANCESTRAL SPECIES 8 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b.d ##16 ENSGT01030000234527.A.a.b.a.b.c ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00990000214258 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.m ENSGT00390000009853 Panthera_a ANCESTRAL SPECIES 9 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b.d ##16 ENSGT01030000234527.A.a.b.a.b.c ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00990000214258 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.m ENSGT00390000009853 leopard MODERN SPECIES 99 GLRX3 (ENSPPRG00000001761) EBF3 (ENSPPRG00000001725) ##22 MGMT (ENSPPRG00000001583) PTPRE (ENSPPRG00000001519) CLRN3 (ENSPPRG00000001404) FOXI2 (ENSPPRG00000001369) NPS (ENSPPRG00000001364) DOCK1 (ENSPPRG00000001334) INSYN2A (ENSPPRG00000022432) ENSPPRG00000022049 ENSPPRG00000021967 ADAM12 (ENSPPRG00000021750) FANK1 (ENSPPRG00000020283) DHX32 (ENSPPRG00000019772) BCCIP (ENSPPRG00000019653) UROS (ENSPPRG00000019516) MMP21 (ENSPPRG00000019186) lion MODERN SPECIES 11 JAKMIP3 (ENSPLOG00000011546) BNIP3 (ENSPLOG00000011772) ##19 PPP2R2D (ENSPLOG00000011796) ##21 TCERG1L (ENSPLOG00000011912) GLRX3 (ENSPLOG00000012041) ENSPLOG00000012158 EBF3 (ENSPLOG00000012235) ##22 MGMT (ENSPLOG00000012521) ENSPLOG00000012624 ##23 PTPRE (ENSPLOG00000012703) CLRN3 (ENSPLOG00000012875) FOXI2 (ENSPLOG00000012910) ENSPLOG00000012975 NPS (ENSPLOG00000013023) DOCK1 (ENSPLOG00000013132) INSYN2A (ENSPLOG00000013885) C10orf90 (ENSPLOG00000013967) ADAM12 (ENSPLOG00000014123) FANK1 (ENSPLOG00000014351) DHX32 (ENSPLOG00000014637) BCCIP (ENSPLOG00000014708) UROS (ENSPLOG00000014815) Cat MODERN SPECIES 242 KNDC1 (ENSFCAG00000011577) ADGRA1 (ENSFCAG00000040404) ENSFCAG00000030386 NKX6-2 (ENSFCAG00000040274) INPP5A (ENSFCAG00000010899) PWWP2B (ENSFCAG00000006289) LRRC27 (ENSFCAG00000009391) STK32C (ENSFCAG00000013794) DPYSL4 (ENSFCAG00000022134) ##16 JAKMIP3 (ENSFCAG00000000239) BNIP3 (ENSFCAG00000039164) ##19 PPP2R2D (ENSFCAG00000028978) ##21 TCERG1L (ENSFCAG00000018390) GLRX3 (ENSFCAG00000046087) ENSFCAG00000046481 EBF3 (ENSFCAG00000027202) ##22 ENSFCAG00000035983 ENSFCAG00000050995 ##23 PTPRE (ENSFCAG00000009676) CLRN3 (ENSFCAG00000037549) FOXI2 (ENSFCAG00000042347) ENSFCAG00000051430 NPS (ENSFCAG00000032950) INSYN2A (ENSFCAG00000007355) DOCK1 (ENSFCAG00000008372) C10orf90 (ENSFCAG00000040514) ADAM12 (ENSFCAG00000000813) FANK1 (ENSFCAG00000024207) DHX32 (ENSFCAG00000009555) BCCIP (ENSFCAG00000024151) UROS (ENSFCAG00000009550) Caniformia ANCESTRAL SPECIES 13 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Canidae ANCESTRAL SPECIES 16 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Canis_lupus ANCESTRAL SPECIES 20 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Dingo MODERN SPECIES 165 ENSCAFG00020019890 ADGRA1 (ENSCAFG00020019880) ENSCAFG00020019864 ENSCAFG00020019855 NKX6-2 (ENSCAFG00020019853) INPP5A (ENSCAFG00020019852) PWWP2B (ENSCAFG00020019847) LRRC27 (ENSCAFG00020019833) STK32C (ENSCAFG00020019805) DPYSL4 (ENSCAFG00020019783) ##16 JAKMIP3 (ENSCAFG00020019776) BNIP3 (ENSCAFG00020019755) ##19 PPP2R2D (ENSCAFG00020019751) ##21 TCERG1L (ENSCAFG00020019728) GLRX3 (ENSCAFG00020019710) EBF3 (ENSCAFG00020019575) ##22 MGMT (ENSCAFG00020019566) ENSCAFG00020019563 ##23 PTPRE (ENSCAFG00020019540) CLRN3 (ENSCAFG00020019536) FOXI2 (ENSCAFG00020019530) NPS (ENSCAFG00020019529) INSYN2A (ENSCAFG00020019523) DOCK1 (ENSCAFG00020015843) ENSCAFG00020015741 ADAM12 (ENSCAFG00020015691) FANK1 (ENSCAFG00020015665) DHX32 (ENSCAFG00020015661) BCCIP (ENSCAFG00020015652) UROS (ENSCAFG00020015647) MMP21 (ENSCAFG00020015646) Dog MODERN SPECIES 20 KNDC1 (ENSCAFG00845025074) ADGRA1 (ENSCAFG00845024923) ENSCAFG00845024842 ENSCAFG00845024738 NKX6-2 (ENSCAFG00845024682) PWWP2B (ENSCAFG00845024627) LRRC27 (ENSCAFG00845024536) INPP5A (ENSCAFG00845024333) STK32C (ENSCAFG00845024042) DPYSL4 (ENSCAFG00845023871) ##16 JAKMIP3 (ENSCAFG00845028823) BNIP3 (ENSCAFG00845028735) ##19 PPP2R2D (ENSCAFG00845028678) ##21 TCERG1L (ENSCAFG00845028594) GLRX3 (ENSCAFG00845028498) EBF3 (ENSCAFG00845028327) ##22 MGMT (ENSCAFG00845028222) ENSCAFG00845028130 ##23 PTPRE (ENSCAFG00845027906) CLRN3 (ENSCAFG00845027851) FOXI2 (ENSCAFG00845027825) NPS (ENSCAFG00845027796) INSYN2A (ENSCAFG00845027750) DOCK1 (ENSCAFG00845027604) C10orf90 (ENSCAFG00845027244) ADAM12 (ENSCAFG00845027056) ENSCAFG00845026942 DHX32 (ENSCAFG00845026856) BCCIP (ENSCAFG00845026810) UROS (ENSCAFG00845026709) MMP21 (ENSCAFG00845026645) Red fox MODERN SPECIES 82 VENTX (ENSVVUG00000000795) ENSVVUG00000000803 ENSVVUG00000000832 ADGRA1 (ENSVVUG00000000861) ENSVVUG00000000930 ENSVVUG00000001061 INPP5A (ENSVVUG00000001099) ENSVVUG00000001515 LRRC27 (ENSVVUG00000001533) STK32C (ENSVVUG00000001568) DPYSL4 (ENSVVUG00000001783) ##16 JAKMIP3 (ENSVVUG00000001849) BNIP3 (ENSVVUG00000002173) ##19 PPP2R2D (ENSVVUG00000002189) ##21 GLRX3 (ENSVVUG00000002242) EBF3 (ENSVVUG00000002545) ##22 MGMT (ENSVVUG00000005481) ENSVVUG00000005509 ##23 PTPRE (ENSVVUG00000005552) CLRN3 (ENSVVUG00000005625) FOXI2 (ENSVVUG00000005629) NPS (ENSVVUG00000005633) DOCK1 (ENSVVUG00000005643) C10orf90 (ENSVVUG00000005698) ADAM12 (ENSVVUG00000005741) FANK1 (ENSVVUG00000005751) DHX32 (ENSVVUG00000005783) BCCIP (ENSVVUG00000005796) UROS (ENSVVUG00000005801) ENSVVUG00000005832 EDRF1 (ENSVVUG00000005942) Caniformia_b ANCESTRAL SPECIES 10 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Mustelinae ANCESTRAL SPECIES 40 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d American mink MODERN SPECIES 35 ENSNVIG00000009696 ENSNVIG00000009689 ENSNVIG00000009668 ADGRA1 (ENSNVIG00000009648) CFAP46 (ENSNVIG00000009518) INPP5A (ENSNVIG00000009438) ENSNVIG00000009422 STK32C (ENSNVIG00000009345) DPYSL4 (ENSNVIG00000009300) ##16 JAKMIP3 (ENSNVIG00000009268) BNIP3 (ENSNVIG00000009234) ##19 PPP2R2D (ENSNVIG00000009221) ##21 TCERG1L (ENSNVIG00000009195) ENSNVIG00000009183 GLRX3 (ENSNVIG00000009163) EBF3 (ENSNVIG00000009091) ##22 MGMT (ENSNVIG00000009056) PTPRE (ENSNVIG00000008962) CLRN3 (ENSNVIG00000008954) FOXI2 (ENSNVIG00000008944) ENSNVIG00000008936 NPS (ENSNVIG00000008930) INSYN2A (ENSNVIG00000008917) DOCK1 (ENSNVIG00000008864) C10orf90 (ENSNVIG00000008805) ADAM12 (ENSNVIG00000008712) FANK1 (ENSNVIG00000008651) DHX32 (ENSNVIG00000008638) ENSNVIG00000008620 UROS (ENSNVIG00000008590) MMP21 (ENSNVIG00000008553) Ferret MODERN SPECIES 193 INPP5A (ENSMPUG00000002237) PWWP2B (ENSMPUG00000019247) LRRC27 (ENSMPUG00000002242) STK32C (ENSMPUG00000002244) DPYSL4 (ENSMPUG00000002249) ##16 JAKMIP3 (ENSMPUG00000002254) ENSMPUG00000002319 BNIP3 (ENSMPUG00000002321) ##19 PPP2R2D (ENSMPUG00000002352) ##21 ENSMPUG00000002424 ENSMPUG00000002425 ENSMPUG00000002429 ENSMPUG00000002437 GLRX3 (ENSMPUG00000002441) ENSMPUG00000002446 EBF3 (ENSMPUG00000002449) ##22 ENSMPUG00000002465 ENSMPUG00000019250 ENSMPUG00000002471 ENSMPUG00000002475 ##23 PTPRE (ENSMPUG00000002492) CLRN3 (ENSMPUG00000002497) ENSMPUG00000002500 FOXI2 (ENSMPUG00000002504) NPS (ENSMPUG00000002509) DOCK1 (ENSMPUG00000002512) INSYN2A (ENSMPUG00000002522) ENSMPUG00000002525 C10orf90 (ENSMPUG00000002530) ADAM12 (ENSMPUG00000002554) FANK1 (ENSMPUG00000002564) Ursidae DUPLICATION Ursidae ANCESTRAL SPECIES ENSGT00950000182859.A.b.e ##22 Ursus ANCESTRAL SPECIES ENSGT00950000182859.A.b.e ##22 American black bear MODERN SPECIES 5559 ENSUAMG00000019849 ##22 Ursidae ANCESTRAL SPECIES 5 ENSGT00940000163757 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b.f ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Giant Panda DUPLICATION Giant Panda MODERN SPECIES 1647 ENSAMEG00000024583 ##22 Giant Panda MODERN SPECIES 16 ENSAMEG00000030823 ENSAMEG00000010458 ENSAMEG00000028224 ENSAMEG00000010467 ENSAMEG00000010522 INPP5A (ENSAMEG00000010595) PWWP2B (ENSAMEG00000010634) LRRC27 (ENSAMEG00000010636) STK32C (ENSAMEG00000010664) DPYSL4 (ENSAMEG00000010698) ##16 JAKMIP3 (ENSAMEG00000010847) BNIP3 (ENSAMEG00000010874) ##19 PPP2R2D (ENSAMEG00000010891) ##21 TCERG1L (ENSAMEG00000006147) GLRX3 (ENSAMEG00000003257) ENSAMEG00000003291 ##22 MGMT (ENSAMEG00000003370) ENSAMEG00000000203 ##23 PTPRE (ENSAMEG00000000206) CLRN3 (ENSAMEG00000000246) FOXI2 (ENSAMEG00000023894) NPS (ENSAMEG00000025718) INSYN2A (ENSAMEG00000007293) DOCK1 (ENSAMEG00000007297) ENSAMEG00000030009 ENSAMEG00000007314 ADAM12 (ENSAMEG00000007320) ENSAMEG00000025962 ENSAMEG00000024389 DHX32 (ENSAMEG00000007401) ENSAMEG00000026388 Ursus ANCESTRAL SPECIES 7 ENSGT00390000011408 ENSGT00980000199387 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b.f ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 ENSGT00390000012491 Polar bear MODERN SPECIES 92 VENTX (ENSUMAG00000010084) ENSUMAG00000010081 ENSUMAG00000010071 ENSUMAG00000010068 ENSUMAG00000010030 ENSUMAG00000010012 INPP5A (ENSUMAG00000010008) LRRC27 (ENSUMAG00000009991) STK32C (ENSUMAG00000009984) DPYSL4 (ENSUMAG00000009739) ##16 JAKMIP3 (ENSUMAG00000009685) BNIP3 (ENSUMAG00000009675) ##19 PPP2R2D (ENSUMAG00000009572) ##21 TCERG1L (ENSUMAG00000009552) GLRX3 (ENSUMAG00000009512) EBF3 (ENSUMAG00000009444) ##22 MGMT (ENSUMAG00000009436) PTPRE (ENSUMAG00000009225) CLRN3 (ENSUMAG00000009182) NPS (ENSUMAG00000009175) INSYN2A (ENSUMAG00000009173) DOCK1 (ENSUMAG00000006567) C10orf90 (ENSUMAG00000006231) ADAM12 (ENSUMAG00000005776) FANK1 (ENSUMAG00000005705) DHX32 (ENSUMAG00000005702) BCCIP (ENSUMAG00000005698) UROS (ENSUMAG00000005692) EDRF1 (ENSUMAG00000005462) TEX36 (ENSUMAG00000005429) ENSUMAG00000005406 American black bear DUPLICATION American black bear MODERN SPECIES 1351 EBF3 (ENSUAMG00000004142) ##22 ENSUAMG00000004543 American black bear MODERN SPECIES 1092 ENSUAMG00000024223 ##22 Laurasiatheria_c ANCESTRAL SPECIES 15 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Equus ANCESTRAL SPECIES 9 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182864.a.b.b.a.b.a.a.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Horse MODERN SPECIES KNDC1 (ENSECAG00000020221) ADGRA1 (ENSECAG00000000065) CFAP46 (ENSECAG00000006777) INPP5A (ENSECAG00000015981) NKX6-2 (ENSECAG00000029054) PWWP2B (ENSECAG00000002362) LRRC27 (ENSECAG00000000671) STK32C (ENSECAG00000009210) DPYSL4 (ENSECAG00000017084) ##16 JAKMIP3 (ENSECAG00000015234) BNIP3 (ENSECAG00000017458) ##19 PPP2R2D (ENSECAG00000024456) ##21 TCERG1L (ENSECAG00000024936) ENSECAG00000047547 GLRX3 (ENSECAG00000000306) EBF3 (ENSECAG00000034734) ##22 MGMT (ENSECAG00000026858) ENSECAG00000036105 ##23 PTPRE (ENSECAG00000008876) CLRN3 (ENSECAG00000023786) FOXI2 (ENSECAG00000029047) NPS (ENSECAG00000034244) DOCK1 (ENSECAG00000023813) INSYN2A (ENSECAG00000005053) C1H10orf90 (ENSECAG00000010056) ADAM12 (ENSECAG00000012744) FANK1 (ENSECAG00000006524) DHX32 (ENSECAG00000014298) BCCIP (ENSECAG00000012266) UROS (ENSECAG00000017285) MMP21 (ENSECAG00000000156) Donkey MODERN SPECIES 11 ADGRA1 (ENSEASG00005033598) CFAP46 (ENSEASG00005015010) NKX6-2 (ENSEASG00005032203) INPP5A (ENSEASG00005015002) PWWP2B (ENSEASG00005014999) LRRC27 (ENSEASG00005014996) STK32C (ENSEASG00005014980) DPYSL4 (ENSEASG00005014971) ##16 JAKMIP3 (ENSEASG00005014963) BNIP3 (ENSEASG00005014958) ##19 PPP2R2D (ENSEASG00005014954) ##21 ENSEASG00005029486 ##21 TCERG1L (ENSEASG00005014950) GLRX3 (ENSEASG00005014940) C10orf143 (ENSEASG00005033308) EBF3 (ENSEASG00005014926) ##22 ENSEASG00005014920 ENSEASG00005036754 ##23 PTPRE (ENSEASG00005014898) CLRN3 (ENSEASG00005014889) FOXI2 (ENSEASG00005014885) NPS (ENSEASG00005014882) DOCK1 (ENSEASG00005014300) INSYN2A (ENSEASG00005014880) C10orf90 (ENSEASG00005014276) ADAM12 (ENSEASG00005014093) FANK1 (ENSEASG00005014037) DHX32 (ENSEASG00005014032) BCCIP (ENSEASG00005014028) UROS (ENSEASG00005014025) MMP21 (ENSEASG00005014020) Chiroptera ANCESTRAL SPECIES 6 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Microchiroptera ANCESTRAL SPECIES 5 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Greater horseshoe bat MODERN SPECIES 7 KNDC1 (ENSRFEG00010009704) ADGRA1 (ENSRFEG00010005366) CFAP46 (ENSRFEG00010005557) NKX6-2 (ENSRFEG00010005830) INPP5A (ENSRFEG00010005875) PWWP2B (ENSRFEG00010005938) LRRC27 (ENSRFEG00010005986) STK32C (ENSRFEG00010006040) DPYSL4 (ENSRFEG00010006110) ##16 JAKMIP3 (ENSRFEG00010006261) BNIP3 (ENSRFEG00010006456) ##19 PPP2R2D (ENSRFEG00010006475) ##21 TCERG1L (ENSRFEG00010006553) GLRX3 (ENSRFEG00010006617) C10orf143 (ENSRFEG00010006663) EBF3 (ENSRFEG00010006695) ##22 MGMT (ENSRFEG00010006726) ENSRFEG00010006747 ENSRFEG00010006777 ##23 PTPRE (ENSRFEG00010006840) CLRN3 (ENSRFEG00010006914) FOXI2 (ENSRFEG00010006944) NPS (ENSRFEG00010006976) DOCK1 (ENSRFEG00010007054) INSYN2A (ENSRFEG00010007237) C10orf90 (ENSRFEG00010007318) ADAM12 (ENSRFEG00010007460) FANK1 (ENSRFEG00010007706) DHX32 (ENSRFEG00010007894) BCCIP (ENSRFEG00010007976) UROS (ENSRFEG00010008009) Microbat MODERN SPECIES 1192 VENTX (ENSMLUG00000012455) ENSMLUG00000005313 KNDC1 (ENSMLUG00000005282) ADGRA1 (ENSMLUG00000005244) ENSMLUG00000006801 ENSMLUG00000000925 NKX6-2 (ENSMLUG00000023493) INPP5A (ENSMLUG00000000913) LRRC27 (ENSMLUG00000014493) STK32C (ENSMLUG00000012226) DPYSL4 (ENSMLUG00000012216) ##16 JAKMIP3 (ENSMLUG00000011301) BNIP3 (ENSMLUG00000001405) ##19 PPP2R2D (ENSMLUG00000025135) ##21 TCERG1L (ENSMLUG00000002932) EBF3 (ENSMLUG00000005478) ##22 MGMT (ENSMLUG00000005467) Megabat MODERN SPECIES 3927 EBF3 (ENSPVAG00000013519) ##22 Euarchontoglires ANCESTRAL SPECIES 16 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Euarchontoglires_A ANCESTRAL SPECIES 15 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Tree shrew MODERN SPECIES 3706 EBF3 (ENSTBEG00000005858) ##22 MGMT (ENSTBEG00000005509) Glires ANCESTRAL SPECIES 16 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Rodentia ANCESTRAL SPECIES 16 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Rodentia_A ANCESTRAL SPECIES 15 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Hystricomorpha ANCESTRAL SPECIES 1 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a.d ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Hystricomorpha_a ANCESTRAL SPECIES 3 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a.d ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Hystricomorpha_b ANCESTRAL SPECIES 14 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a.d ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Long-tailed chinchilla MODERN SPECIES 184 KNDC1 (ENSCLAG00000008097) ADGRA1 (ENSCLAG00000007830) CFAP46 (ENSCLAG00000006199) NKX6-2 (ENSCLAG00000002882) INPP5A (ENSCLAG00000002531) PWWP2B (ENSCLAG00000002466) LRRC27 (ENSCLAG00000002523) STK32C (ENSCLAG00000002454) DPYSL4 (ENSCLAG00000002222) ##16 JAKMIP3 (ENSCLAG00000003088) BNIP3 (ENSCLAG00000002633) ##19 ENSCLAG00000002552 ##21 TCERG1L (ENSCLAG00000004268) GLRX3 (ENSCLAG00000003875) C10orf143 (ENSCLAG00000003734) EBF3 (ENSCLAG00000003349) ##22 MGMT (ENSCLAG00000002984) PTPRE (ENSCLAG00000007311) CLRN3 (ENSCLAG00000002567) FOXI2 (ENSCLAG00000002504) NPS (ENSCLAG00000002433) INSYN2A (ENSCLAG00000002354) DOCK1 (ENSCLAG00000002979) C10orf90 (ENSCLAG00000002496) ADAM12 (ENSCLAG00000003758) FANK1 (ENSCLAG00000003154) DHX32 (ENSCLAG00000012050) BCCIP (ENSCLAG00000010908) UROS (ENSCLAG00000011035) MMP21 (ENSCLAG00000010900) EDRF1 (ENSCLAG00000002765) Degu MODERN SPECIES 51 ENSODEG00000017658 ##16 JAKMIP3 (ENSODEG00000016964) ENSODEG00000020463 ENSODEG00000017046 ENSODEG00000017141 ##19 ENSODEG00000017075 ENSODEG00000017156 ##21 ENSODEG00000016911 ENSODEG00000018467 ENSODEG00000016944 TCERG1L (ENSODEG00000017091) ENSODEG00000020470 ENSODEG00000017247 C10orf143 (ENSODEG00000017128) ENSODEG00000017102 EBF3 (ENSODEG00000017357) ##22 MGMT (ENSODEG00000017257) ENSODEG00000017149 ENSODEG00000020468 PTPRE (ENSODEG00000017386) CLRN3 (ENSODEG00000017134) FOXI2 (ENSODEG00000017334) NPS (ENSODEG00000017172) DOCK1 (ENSODEG00000017379) INSYN2A (ENSODEG00000017248) ENSODEG00000017188 ENSODEG00000017410 C10orf90 (ENSODEG00000017207) ADAM12 (ENSODEG00000017603) FANK1 (ENSODEG00000017273) ENSODEG00000020420 Guinea pig MODERN SPECIES 1 ADGRA1 (ENSCPOG00000004376) CFAP46 (ENSCPOG00000008507) NKX6-2 (ENSCPOG00000020442) INPP5A (ENSCPOG00000015072) PWWP2B (ENSCPOG00000033892) LRRC27 (ENSCPOG00000003319) STK32C (ENSCPOG00000003315) DPYSL4 (ENSCPOG00000014952) ##16 JAKMIP3 (ENSCPOG00000010444) BNIP3 (ENSCPOG00000038406) ##19 PPP2R2D (ENSCPOG00000036633) ##21 TCERG1L (ENSCPOG00000001709) ENSCPOG00000002822 ENSCPOG00000039345 C10orf143 (ENSCPOG00000033482) EBF3 (ENSCPOG00000005096) ##22 MGMT (ENSCPOG00000033800) ENSCPOG00000008681 PTPRE (ENSCPOG00000014140) CLRN3 (ENSCPOG00000014139) FOXI2 (ENSCPOG00000011791) NPS (ENSCPOG00000020430) DOCK1 (ENSCPOG00000015495) INSYN2A (ENSCPOG00000015500) HNRNPA1L2 (ENSCPOG00000021077) C10orf90 (ENSCPOG00000011106) ADAM12 (ENSCPOG00000003867) FANK1 (ENSCPOG00000003862) DHX32 (ENSCPOG00000006441) BCCIP (ENSCPOG00000006438) UROS (ENSCPOG00000004834) Naked mole-rat female MODERN SPECIES 4 ENSHGLG00000014102 ENSHGLG00000044778 INPP5A (ENSHGLG00000011306) PWWP2B (ENSHGLG00000043379) ENSHGLG00000046735 STK32C (ENSHGLG00000009808) DPYSL4 (ENSHGLG00000012949) ##16 JAKMIP3 (ENSHGLG00000018781) ENSHGLG00000016646 ##19 ENSHGLG00000016574 ##21 ENSHGLG00000033671 TCERG1L (ENSHGLG00000014281) ENSHGLG00000038454 GLRX3 (ENSHGLG00000016229) ENSHGLG00000014516 EBF3 (ENSHGLG00000016339) ##22 MGMT (ENSHGLG00000014053) ENSHGLG00000039917 ENSHGLG00000021135 ENSHGLG00000046544 ##23 PTPRE (ENSHGLG00000015895) CLRN3 (ENSHGLG00000010190) FOXI2 (ENSHGLG00000010615) NPS (ENSHGLG00000011458) ENSHGLG00000046538 ENSHGLG00000017202 ENSHGLG00000015801 ENSHGLG00000043292 ENSHGLG00000017225 ENSHGLG00000004128 ADAM12 (ENSHGLG00000014915) Sciuridae ANCESTRAL SPECIES 21 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Marmotini ANCESTRAL SPECIES 16 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.s ENSGT00390000009853 ENSGT00940000159140.d Alpin marmot MODERN SPECIES 53 ENSMMMG00000003970 ENSMMMG00000003958 ADGRA1 (ENSMMMG00000003880) CFAP46 (ENSMMMG00000003686) INPP5A (ENSMMMG00000003658) PWWP2B (ENSMMMG00000003646) ENSMMMG00000003626 STK32C (ENSMMMG00000003606) DPYSL4 (ENSMMMG00000003578) ##16 JAKMIP3 (ENSMMMG00000003519) BNIP3 (ENSMMMG00000003504) ##19 PPP2R2D (ENSMMMG00000003482) ##21 TCERG1L (ENSMMMG00000003422) GLRX3 (ENSMMMG00000003400) C10orf143 (ENSMMMG00000003377) EBF3 (ENSMMMG00000003346) ##22 MGMT (ENSMMMG00000003336) ENSMMMG00000003330 ENSMMMG00000003323 ##23 PTPRE (ENSMMMG00000003177) CLRN3 (ENSMMMG00000003163) FOXI2 (ENSMMMG00000003153) NPS (ENSMMMG00000003133) INSYN2A (ENSMMMG00000003123) DOCK1 (ENSMMMG00000003000) C10orf90 (ENSMMMG00000002952) ADAM12 (ENSMMMG00000002897) FANK1 (ENSMMMG00000002858) DHX32 (ENSMMMG00000002778) ENSMMMG00000002705 UROS (ENSMMMG00000002640) Marmotini_b ANCESTRAL SPECIES 27 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.s ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Squirrel MODERN SPECIES 86 KNDC1 (ENSSTOG00000003325) ADGRA1 (ENSSTOG00000022466) CFAP46 (ENSSTOG00000026167) NKX6-2 (ENSSTOG00000006771) INPP5A (ENSSTOG00000006754) PWWP2B (ENSSTOG00000022631) LRRC27 (ENSSTOG00000016397) STK32C (ENSSTOG00000005463) DPYSL4 (ENSSTOG00000004242) ##16 JAKMIP3 (ENSSTOG00000025513) BNIP3 (ENSSTOG00000012456) ##19 PPP2R2D (ENSSTOG00000012446) ##21 TCERG1L (ENSSTOG00000002199) GLRX3 (ENSSTOG00000016258) C10orf143 (ENSSTOG00000030833) EBF3 (ENSSTOG00000006113) ##22 MGMT (ENSSTOG00000034415) PTPRE (ENSSTOG00000005993) CLRN3 (ENSSTOG00000005988) FOXI2 (ENSSTOG00000000818) NPS (ENSSTOG00000033393) INSYN2A (ENSSTOG00000008121) DOCK1 (ENSSTOG00000008039) C10orf90 (ENSSTOG00000003990) ADAM12 (ENSSTOG00000003951) FANK1 (ENSSTOG00000003931) DHX32 (ENSSTOG00000019851) ENSSTOG00000011828 UROS (ENSSTOG00000011820) MMP21 (ENSSTOG00000011810) EDRF1 (ENSSTOG00000011796) Arctic ground squirrel MODERN SPECIES 481 GLRX3 (ENSUPAG00010019869) C10orf143 (ENSUPAG00010019889) EBF3 (ENSUPAG00010019897) ##22 MGMT (ENSUPAG00010019938) ENSUPAG00010019942 Eurasian red squirrel MODERN SPECIES 13 ADGRA1 (ENSSVLG00005017458) CFAP46 (ENSSVLG00005017722) NKX6-2 (ENSSVLG00005018951) INPP5A (ENSSVLG00005019008) PWWP2B (ENSSVLG00005019050) ENSSVLG00005019090 STK32C (ENSSVLG00005019140) DPYSL4 (ENSSVLG00005019206) ##16 JAKMIP3 (ENSSVLG00005019622) ENSSVLG00005020231 BNIP3 (ENSSVLG00005020273) ##19 ENSSVLG00005020302 ##21 TCERG1L (ENSSVLG00005020392) ENSSVLG00005020513 C10orf143 (ENSSVLG00005020535) EBF3 (ENSSVLG00005020574) ##22 MGMT (ENSSVLG00005020626) PTPRE (ENSSVLG00005020703) CLRN3 (ENSSVLG00005020884) FOXI2 (ENSSVLG00005020918) NPS (ENSSVLG00005020954) DOCK1 (ENSSVLG00005021022) INSYN2A (ENSSVLG00005021779) C10orf90 (ENSSVLG00005021828) ADAM12 (ENSSVLG00005021959) FANK1 (ENSSVLG00005022149) DHX32 (ENSSVLG00005022286) ENSSVLG00005022333 UROS (ENSSVLG00005022384) MMP21 (ENSSVLG00005000191) EDRF1 (ENSSVLG00005000243) Rodentia_B ANCESTRAL SPECIES 10 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Kangaroo rat MODERN SPECIES 377 Cfap46 (ENSDORG00000023610) Inpp5a (ENSDORG00000002805) Pwwp2b (ENSDORG00000011183) Stk32c (ENSDORG00000000772) Dpysl4 (ENSDORG00000000765) ##16 Jakmip3 (ENSDORG00000009703) Bnip3 (ENSDORG00000012511) ##19 Ppp2r2d (ENSDORG00000012510) ##21 Tcerg1l (ENSDORG00000013471) ENSDORG00000014163 Ebf3 (ENSDORG00000012111) ##22 Ptpre (ENSDORG00000010146) Clrn3 (ENSDORG00000026991) Nps (ENSDORG00000013294) Dock1 (ENSDORG00000003440) Insyn2a (ENSDORG00000003447) ENSDORG00000024720 Adam12 (ENSDORG00000005609) Fank1 (ENSDORG00000005607) Dhx32 (ENSDORG00000008006) Bccip (ENSDORG00000008005) Uros (ENSDORG00000012151) Mmp21 (ENSDORG00000012150) Edrf1 (ENSDORG00000012147) Tex36 (ENSDORG00000012145) ENSDORG00000026871 Myomorpha ANCESTRAL SPECIES 1 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Muroidea ANCESTRAL SPECIES 1 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Muroidea_A ANCESTRAL SPECIES ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Cricetidae ANCESTRAL SPECIES 1 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000236277 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Cricetinae ANCESTRAL SPECIES 2 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000236277 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Golden Hamster MODERN SPECIES 617 Kndc1 (ENSMAUG00000002192) Adgra1 (ENSMAUG00000001774) ENSMAUG00000001678 Nkx6-2 (ENSMAUG00000004076) Inpp5a (ENSMAUG00000002979) Pwwp2b (ENSMAUG00000001368) Lrrc27 (ENSMAUG00000004835) Stk32c (ENSMAUG00000001949) Dpysl4 (ENSMAUG00000005192) ##16 Jakmip3 (ENSMAUG00000005628) Ppp2r2d (ENSMAUG00000001731) ##21 Mapk1ip1 (ENSMAUG00000001985) Tcerg1l (ENSMAUG00000004410) Glrx3 (ENSMAUG00000003122) ENSMAUG00000002010 Ebf3 (ENSMAUG00000007279) ##22 Mgmt (ENSMAUG00000003180) Mki67 (ENSMAUG00000004207) ##23 Ptpre (ENSMAUG00000006895) Clrn3 (ENSMAUG00000003679) Foxi2 (ENSMAUG00000002075) Nps (ENSMAUG00000003085) Insyn2a (ENSMAUG00000004802) ENSMAUG00000003941 D7Ertd443e (ENSMAUG00000006262) Adam12 (ENSMAUG00000006532) Fank1 (ENSMAUG00000009677) Dhx32 (ENSMAUG00000003238) Bccip (ENSMAUG00000004747) Uros (ENSMAUG00000003631) Mmp21 (ENSMAUG00000003750) Chinese hamster chok1gshd MODERN SPECIES 401 ENSCGRG00001022196 ENSCGRG00001016092 Nkx6-2 (ENSCGRG00001016308) Inpp5a (ENSCGRG00001015561) Pwwp2b (ENSCGRG00001016752) Lrrc27 (ENSCGRG00001022907) Stk32c (ENSCGRG00001016474) Dpysl4 (ENSCGRG00001015994) ##16 Jakmip3 (ENSCGRG00001000495) Bnip3 (ENSCGRG00001021974) ##19 Ppp2r2d (ENSCGRG00001021588) ##21 Mapk1ip1 (ENSCGRG00001010991) Tcerg1l (ENSCGRG00001022062) Glrx3 (ENSCGRG00001015788) ENSCGRG00001015409 Ebf3 (ENSCGRG00001012978) ##22 Mgmt (ENSCGRG00001004521) Mki67 (ENSCGRG00001017463) ##23 Ptpre (ENSCGRG00001012914) Clrn3 (ENSCGRG00001019690) Foxi2 (ENSCGRG00001007522) Nps (ENSCGRG00001019970) Insyn2a (ENSCGRG00001015996) Dock1 (ENSCGRG00001021352) D7Ertd443e (ENSCGRG00001009985) Adam12 (ENSCGRG00001019498) Fank1 (ENSCGRG00001019346) Dhx32 (ENSCGRG00001016739) Bccip (ENSCGRG00001013505) Uros (ENSCGRG00001022739) Mmp21 (ENSCGRG00001021076) Cricetidae_B ANCESTRAL SPECIES 1 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000236277 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Northern American deer mouse MODERN SPECIES Nkx6-2 (ENSPEMG00000009524) Inpp5a (ENSPEMG00000022882) Pwwp2b (ENSPEMG00000018469) Lrrc27 (ENSPEMG00000023223) Stk32c (ENSPEMG00000017281) Dpysl4 (ENSPEMG00000023587) ##16 Jakmip3 (ENSPEMG00000024203) ENSPEMG00000030178 Bnip3 (ENSPEMG00000000428) ##19 ENSPEMG00000023056 ##21 Mapk1ip1 (ENSPEMG00000025489) Tcerg1l (ENSPEMG00000023624) Glrx3 (ENSPEMG00000023550) ENSPEMG00000023531 ENSPEMG00000027320 Ebf3 (ENSPEMG00000011117) ##22 Mgmt (ENSPEMG00000023565) Ptpre (ENSPEMG00000013794) Clrn3 (ENSPEMG00000029776) Foxi2 (ENSPEMG00000021475) Nps (ENSPEMG00000020990) ENSPEMG00000022297 Insyn2a (ENSPEMG00000024251) Dock1 (ENSPEMG00000022081) D7Ertd443e (ENSPEMG00000011783) Adam12 (ENSPEMG00000020560) Fank1 (ENSPEMG00000020393) Dhx32 (ENSPEMG00000020674) Bccip (ENSPEMG00000020996) Uros (ENSPEMG00000000385) Mmp21 (ENSPEMG00000022056) Prairie vole MODERN SPECIES 16 ENSMOCG00000012591 Nkx6-2 (ENSMOCG00000011913) Inpp5a (ENSMOCG00000016229) Pwwp2b (ENSMOCG00000019001) Lrrc27 (ENSMOCG00000013783) Stk32c (ENSMOCG00000004373) Dpysl4 (ENSMOCG00000018100) ##16 Jakmip3 (ENSMOCG00000015036) Bnip3 (ENSMOCG00000019955) ##19 Ppp2r2d (ENSMOCG00000022012) ##21 Mapk1ip1 (ENSMOCG00000012555) Tcerg1l (ENSMOCG00000006531) ENSMOCG00000009116 Glrx3 (ENSMOCG00000012690) ENSMOCG00000016815 Ebf3 (ENSMOCG00000022464) ##22 Mgmt (ENSMOCG00000022738) ENSMOCG00000001433 Mki67 (ENSMOCG00000003924) ##23 Ptpre (ENSMOCG00000017071) Clrn3 (ENSMOCG00000002635) Foxi2 (ENSMOCG00000021677) Nps (ENSMOCG00000021758) Insyn2a (ENSMOCG00000018294) Dock1 (ENSMOCG00000015324) D7Ertd443e (ENSMOCG00000019523) Adam12 (ENSMOCG00000006212) Fank1 (ENSMOCG00000004647) Dhx32 (ENSMOCG00000009862) Bccip (ENSMOCG00000001214) Uros (ENSMOCG00000013059) Murinae ANCESTRAL SPECIES ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00960000190811 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Mus ANCESTRAL SPECIES ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00960000190811 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00900000143289 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Mus_A ANCESTRAL SPECIES 1 ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00960000190811 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00900000143289 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Mus_B ANCESTRAL SPECIES ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00960000190811 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00900000143289 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Mouse MODERN SPECIES 16 Adgra1 (ENSMUSG00000025475) Cfap46 (ENSMUSG00000049571) Nkx6-2 (ENSMUSG00000041309) Inpp5a (ENSMUSG00000025477) Pwwp2b (ENSMUSG00000060260) Lrrc27 (ENSMUSG00000015980) Stk32c (ENSMUSG00000015981) Dpysl4 (ENSMUSG00000025478) ##16 Jakmip3 (ENSMUSG00000056856) Bnip3 (ENSMUSG00000078566) ##19 Ppp2r2d (ENSMUSG00000041769) ##21 Mapk1ip1 (ENSMUSG00000041775) Tcerg1l (ENSMUSG00000091002) Glrx3 (ENSMUSG00000031068) 9430038I01Rik (ENSMUSG00000040139) Ebf3 (ENSMUSG00000010476) ##22 Mgmt (ENSMUSG00000054612) Mki67 (ENSMUSG00000031004) ##23 Ptpre (ENSMUSG00000041836) Clrn3 (ENSMUSG00000050866) Foxi2 (ENSMUSG00000048377) Nps (ENSMUSG00000073804) Insyn2a (ENSMUSG00000073805) Dock1 (ENSMUSG00000058325) D7Ertd443e (ENSMUSG00000030994) Adam12 (ENSMUSG00000054555) Fank1 (ENSMUSG00000053111) Dhx32 (ENSMUSG00000030986) Bccip (ENSMUSG00000030983) Uros (ENSMUSG00000030979) Mmp21 (ENSMUSG00000030981) Mus_C ANCESTRAL SPECIES 14 ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00730000111340.h ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00960000190811 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00900000143289 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Steppe mouse MODERN SPECIES 3376 ENSMSIG00000025899 Inpp5a (ENSMSIG00000025815) Pwwp2b (ENSMSIG00000025796) Lrrc27 (ENSMSIG00000025749) Stk32c (ENSMSIG00000025706) Dpysl4 (ENSMSIG00000025667) ##16 Jakmip3 (ENSMSIG00000025518) Bnip3 (ENSMSIG00000025477) ##19 Ppp2r2d (ENSMSIG00000025443) ##21 Mapk1ip1 (ENSMSIG00000025440) ENSMSIG00000025432 Tcerg1l (ENSMSIG00000025406) Glrx3 (ENSMSIG00000025358) 9430038I01Rik (ENSMSIG00000025331) ENSMSIG00000025325 Ebf3 (ENSMSIG00000025034) ##22 Mgmt (ENSMSIG00000025017) Mki67 (ENSMSIG00000024930) ##23 Ptpre (ENSMSIG00000024604) Clrn3 (ENSMSIG00000024584) Foxi2 (ENSMSIG00000024570) Nps (ENSMSIG00000024560) Insyn2a (ENSMSIG00000024536) Dock1 (ENSMSIG00000024295) ENSMSIG00000024284 D7Ertd443e (ENSMSIG00000024194) Adam12 (ENSMSIG00000024107) Fank1 (ENSMSIG00000024019) Dhx32 (ENSMSIG00000024001) Bccip (ENSMSIG00000023985) Uros (ENSMSIG00000023927) spretus MODERN SPECIES 16 Kndc1 (MGP_SPRETEiJ_G0031732) Adgra1 (MGP_SPRETEiJ_G0031731) Cfap46 (MGP_SPRETEiJ_G0031730) Nkx6-2 (MGP_SPRETEiJ_G0031729) Inpp5a (MGP_SPRETEiJ_G0031728) Pwwp2b (MGP_SPRETEiJ_G0031727) Lrrc27 (MGP_SPRETEiJ_G0031726) Stk32c (MGP_SPRETEiJ_G0031725) Dpysl4 (MGP_SPRETEiJ_G0031724) ##16 MGP_SPRETEiJ_G0031722 ##19 Ppp2r2d (MGP_SPRETEiJ_G0031721) ##21 Mapk1ip1 (MGP_SPRETEiJ_G0031720) Tcerg1l (MGP_SPRETEiJ_G0031719) Glrx3 (MGP_SPRETEiJ_G0031718) 9430038I01Rik (MGP_SPRETEiJ_G0031717) Ebf3 (MGP_SPRETEiJ_G0031716) ##22 Mgmt (MGP_SPRETEiJ_G0031715) Ptpre (MGP_SPRETEiJ_G0031714) Clrn3 (MGP_SPRETEiJ_G0031713) Foxi2 (MGP_SPRETEiJ_G0031712) MGP_SPRETEiJ_G0031711 Nps (MGP_SPRETEiJ_G0031710) Insyn2a (MGP_SPRETEiJ_G0031709) MGP_SPRETEiJ_G0031708 D7Ertd443e (MGP_SPRETEiJ_G0031707) Adam12 (MGP_SPRETEiJ_G0031706) Fank1 (MGP_SPRETEiJ_G0031705) Dhx32 (MGP_SPRETEiJ_G0031704) Bccip (MGP_SPRETEiJ_G0031703) Uros (MGP_SPRETEiJ_G0031702) Mmp21 (MGP_SPRETEiJ_G0031701) Ryukyu mouse MODERN SPECIES 16 Adgra1 (MGP_CAROLIEiJ_G0030620) MGP_CAROLIEiJ_G0030619 Nkx6-2 (MGP_CAROLIEiJ_G0030618) Inpp5a (MGP_CAROLIEiJ_G0030617) Pwwp2b (MGP_CAROLIEiJ_G0030616) MGP_CAROLIEiJ_G0030615 Stk32c (MGP_CAROLIEiJ_G0030614) Dpysl4 (MGP_CAROLIEiJ_G0030613) ##16 MGP_CAROLIEiJ_G0030612 Bnip3 (MGP_CAROLIEiJ_G0030611) ##19 Ppp2r2d (MGP_CAROLIEiJ_G0030610) ##21 Mapk1ip1 (MGP_CAROLIEiJ_G0030609) Tcerg1l (MGP_CAROLIEiJ_G0030608) Glrx3 (MGP_CAROLIEiJ_G0030607) MGP_CAROLIEiJ_G0030606 Ebf3 (MGP_CAROLIEiJ_G0030605) ##22 Mgmt (MGP_CAROLIEiJ_G0030604) MGP_CAROLIEiJ_G0030603 ##23 Ptpre (MGP_CAROLIEiJ_G0030602) Clrn3 (MGP_CAROLIEiJ_G0030601) Foxi2 (MGP_CAROLIEiJ_G0030600) MGP_CAROLIEiJ_G0030599 Nps (MGP_CAROLIEiJ_G0030598) Insyn2a (MGP_CAROLIEiJ_G0030597) Dock1 (MGP_CAROLIEiJ_G0030596) MGP_CAROLIEiJ_G0030595 MGP_CAROLIEiJ_G0030594 D7Ertd443e (MGP_CAROLIEiJ_G0030593) Adam12 (MGP_CAROLIEiJ_G0030592) Fank1 (MGP_CAROLIEiJ_G0030591) Dhx32 (MGP_CAROLIEiJ_G0030590) Shrew mouse MODERN SPECIES Adgra1 (MGP_PahariEiJ_G0013825) Cfap46 (MGP_PahariEiJ_G0013824) Nkx6-2 (MGP_PahariEiJ_G0013823) Inpp5a (MGP_PahariEiJ_G0013822) Pwwp2b (MGP_PahariEiJ_G0013821) MGP_PahariEiJ_G0013820 Stk32c (MGP_PahariEiJ_G0013819) Dpysl4 (MGP_PahariEiJ_G0013818) ##16 MGP_PahariEiJ_G0013817 Bnip3 (MGP_PahariEiJ_G0013816) ##19 Ppp2r2d (MGP_PahariEiJ_G0013815) ##21 Mapk1ip1 (MGP_PahariEiJ_G0013814) Tcerg1l (MGP_PahariEiJ_G0013813) Glrx3 (MGP_PahariEiJ_G0013812) MGP_PahariEiJ_G0013811 Ebf3 (MGP_PahariEiJ_G0013810) ##22 Mgmt (MGP_PahariEiJ_G0013809) MGP_PahariEiJ_G0013808 ##23 Ptpre (MGP_PahariEiJ_G0013807) Clrn3 (MGP_PahariEiJ_G0013806) Foxi2 (MGP_PahariEiJ_G0013805) MGP_PahariEiJ_G0013804 Nps (MGP_PahariEiJ_G0013803) Insyn2a (MGP_PahariEiJ_G0013802) Dock1 (MGP_PahariEiJ_G0013801) D7Ertd443e (MGP_PahariEiJ_G0013800) Adam12 (MGP_PahariEiJ_G0013799) Fank1 (MGP_PahariEiJ_G0013798) Dhx32 (MGP_PahariEiJ_G0013797) Bccip (MGP_PahariEiJ_G0013796) MGP_PahariEiJ_G0013795 Rat MODERN SPECIES Cfap46 (ENSRNOG00000027374) Nkx6-2 (ENSRNOG00000017748) Inpp5a (ENSRNOG00000017635) Pwwp2b (ENSRNOG00000036649) Lrrc27 (ENSRNOG00000017538) Stk32c (ENSRNOG00000006962) Dpysl4 (ENSRNOG00000027582) ##16 Jakmip3 (ENSRNOG00000027590) Bnip3 (ENSRNOG00000017243) ##19 Ppp2r2d (ENSRNOG00000016940) ##21 Mapk1ip1 (ENSRNOG00000016935) Tcerg1l (ENSRNOG00000016737) Glrx3 (ENSRNOG00000016227) C1h10orf143 (ENSRNOG00000050554) ENSRNOG00000065256 Ebf3 (ENSRNOG00000016102) ##22 Mgmt (ENSRNOG00000016038) Mki67 (ENSRNOG00000028137) ##23 Ptpre (ENSRNOG00000015717) Clrn3 (ENSRNOG00000028288) Foxi2 (ENSRNOG00000018917) Nps (ENSRNOG00000036653) Insyn2a (ENSRNOG00000033881) LOC100302465 (ENSRNOG00000027542) Adam12 (ENSRNOG00000018384) Fank1 (ENSRNOG00000018327) Dhx32 (ENSRNOG00000018119) Bccip (ENSRNOG00000018066) Uros (ENSRNOG00000017810) Mmp21 (ENSRNOG00000017756) Edrf1 (ENSRNOG00000017728) Upper Galilee mountains blind mole rat MODERN SPECIES 411 Glrx3 (ENSNGAG00000022227) ENSNGAG00000005888 Ebf3 (ENSNGAG00000022578) ##22 Mgmt (ENSNGAG00000023006) Ptpre (ENSNGAG00000019630) Clrn3 (ENSNGAG00000022917) Foxi2 (ENSNGAG00000015972) Nps (ENSNGAG00000023481) ENSNGAG00000009122 Insyn2a (ENSNGAG00000010671) Lesser Egyptian jerboa MODERN SPECIES 174 Adgra1 (ENSJJAG00000021133) ENSJJAG00000019509 Nkx6-2 (ENSJJAG00000018842) Inpp5a (ENSJJAG00000017708) Pwwp2b (ENSJJAG00000016859) Lrrc27 (ENSJJAG00000016653) ENSJJAG00000019198 Stk32c (ENSJJAG00000017030) Dpysl4 (ENSJJAG00000013066) ##16 Jakmip3 (ENSJJAG00000012161) Bnip3 (ENSJJAG00000002888) ##19 Ppp2r2d (ENSJJAG00000001485) ##21 Tcerg1l (ENSJJAG00000000675) ENSJJAG00000000334 ENSJJAG00000023423 Ebf3 (ENSJJAG00000023260) ##22 Mgmt (ENSJJAG00000023187) Ptpre (ENSJJAG00000022747) Clrn3 (ENSJJAG00000018824) Lagomorpha ANCESTRAL SPECIES 377 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 Rabbit MODERN SPECIES 527 GLRX3 (ENSOCUG00000013091) C10orf143 (ENSOCUG00000033203) EBF3 (ENSOCUG00000008915) ##22 MGMT (ENSOCUG00000017909) Pika MODERN SPECIES 110 EBF3 (ENSOPRG00000013685) ##22 Primates ANCESTRAL SPECIES 16 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Strepsirrhini ANCESTRAL SPECIES 11 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.o ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Lemuriformes DUPLICATION Lemuriformes ANCESTRAL SPECIES 7 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.o ENSGT01030000234750 ENSGT00950000182859.A.b.g ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Lemuriformes_a ANCESTRAL SPECIES 42 ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.o ENSGT01030000234750 ENSGT00950000182859.A.b.g ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00980000201701 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Greater bamboo lemur MODERN SPECIES 335 ENSPSMG00000005069 ##19 PPP2R2D (ENSPSMG00000004766) ##21 ENSPSMG00000004523 GLRX3 (ENSPSMG00000004510) C10orf143 (ENSPSMG00000004477) EBF3 (ENSPSMG00000004429) ##22 MGMT (ENSPSMG00000004282) PTPRE (ENSPSMG00000004258) CLRN3 (ENSPSMG00000004128) ENSPSMG00000004118 NPS (ENSPSMG00000004108) INSYN2A (ENSPSMG00000004094) DOCK1 (ENSPSMG00000003931) ENSPSMG00000003688 ENSPSMG00000003686 ADAM12 (ENSPSMG00000003557) FANK1 (ENSPSMG00000003450) DHX32 (ENSPSMG00000003428) BCCIP (ENSPSMG00000003404) UROS (ENSPSMG00000003340) MMP21 (ENSPSMG00000003262) Coquerels sifaka MODERN SPECIES 854 ENSPCOG00000016848 ##22 MGMT (ENSPCOG00000017485) Mouse lemur MODERN SPECIES 6 INPP5A (ENSMICG00000047464) PWWP2B (ENSMICG00000036753) LRRC27 (ENSMICG00000036674) STK32C (ENSMICG00000026763) DPYSL4 (ENSMICG00000000578) ##16 ENSMICG00000032575 JAKMIP3 (ENSMICG00000026657) ENSMICG00000011985 ##19 ENSMICG00000000580 ##21 TCERG1L (ENSMICG00000045377) ENSMICG00000041751 ENSMICG00000008544 C10orf143 (ENSMICG00000041553) EBF3 (ENSMICG00000008536) ##22 MGMT (ENSMICG00000044094) MKI67 (ENSMICG00000042135) ##23 PTPRE (ENSMICG00000044779) CLRN3 (ENSMICG00000012930) FOXI2 (ENSMICG00000012926) NPS (ENSMICG00000031912) INSYN2A (ENSMICG00000034810) DOCK1 (ENSMICG00000006454) C10orf90 (ENSMICG00000006223) ADAM12 (ENSMICG00000006210) FANK1 (ENSMICG00000006206) DHX32 (ENSMICG00000006199) BCCIP (ENSMICG00000006191) UROS (ENSMICG00000006188) MMP21 (ENSMICG00000006186) Lemuriformes ANCESTRAL SPECIES ENSGT00950000182859.A.b.h ##22 Lemuriformes_a ANCESTRAL SPECIES ENSGT00950000182859.A.b.h ##22 Coquerels sifaka MODERN SPECIES 732 ENSPCOG00000028610 ENSPCOG00000019269 ##19 PPP2R2D (ENSPCOG00000019165) ##21 TCERG1L (ENSPCOG00000024511) GLRX3 (ENSPCOG00000021174) C10orf143 (ENSPCOG00000024981) ENSPCOG00000016078 ##22 Bushbaby MODERN SPECIES 190 ENSOGAG00000029205 ENSOGAG00000003688 NKX6-2 (ENSOGAG00000034196) INPP5A (ENSOGAG00000003686) PWWP2B (ENSOGAG00000026958) LRRC27 (ENSOGAG00000000705) STK32C (ENSOGAG00000016434) DPYSL4 (ENSOGAG00000016432) ##16 JAKMIP3 (ENSOGAG00000016427) BNIP3 (ENSOGAG00000013258) ##19 PPP2R2D (ENSOGAG00000013253) ##21 ENSOGAG00000025696 ENSOGAG00000034114 ENSOGAG00000028137 GLRX3 (ENSOGAG00000015160) EBF3 (ENSOGAG00000007572) ##22 ENSOGAG00000032564 ##23 PTPRE (ENSOGAG00000012722) CLRN3 (ENSOGAG00000007530) ENSOGAG00000027739 FOXI2 (ENSOGAG00000005361) DOCK1 (ENSOGAG00000007521) INSYN2A (ENSOGAG00000025156) C10orf90 (ENSOGAG00000015528) ADAM12 (ENSOGAG00000015525) FANK1 (ENSOGAG00000015521) DHX32 (ENSOGAG00000010905) BCCIP (ENSOGAG00000010901) UROS (ENSOGAG00000010900) MMP21 (ENSOGAG00000010897) EDRF1 (ENSOGAG00000010889) Haplorrhini ANCESTRAL SPECIES 11 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Tarsier MODERN SPECIES 1154 ENSTSYG00000037038 EBF3 (ENSTSYG00000003544) ##22 Simiiformes ANCESTRAL SPECIES 17 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Catarrhini ANCESTRAL SPECIES 18 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.b ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.ab Cercopithecidae ANCESTRAL SPECIES 15 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.a.a ENSGT01030000234750 ENSGT00950000182767.b.b.d.hb.b.b ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00910000147969 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.ab Cercopithecinae ANCESTRAL SPECIES 15 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.a.a ENSGT01030000234750 ENSGT00950000182767.b.b.d.hb.b.b ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00910000147969 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.ab Cercopithecinae_a ANCESTRAL SPECIES 14 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.a.a ENSGT01030000234750 ENSGT00950000182767.b.b.d.hb.b.b ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00910000147969 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.ab Macaca ANCESTRAL SPECIES 11 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.a.a ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.ab ENSGT00390000009853 Macaca_a ANCESTRAL SPECIES 13 ENSGT01030000240187 ENSGT00940000160175.b ENSGT00910000147499 ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000163244.d.b.b.a.b.a.a ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.ab ENSGT00390000009853 Crab-eating macaque MODERN SPECIES 19 NKX6-2 (ENSMFAG00000045566) INPP5A (ENSMFAG00000003838) LRRC27 (ENSMFAG00000044506) ENSMFAG00000001844 STK32C (ENSMFAG00000004135) DPYSL4 (ENSMFAG00000033070) ##16 JAKMIP3 (ENSMFAG00000032603) BNIP3 (ENSMFAG00000036887) ##19 PPP2R2D (ENSMFAG00000001365) ##21 ENSMFAG00000054408 TCERG1L (ENSMFAG00000043079) GLRX3 (ENSMFAG00000001366) ENSMFAG00000014400 ENSMFAG00000059881 C10orf143 (ENSMFAG00000031525) EBF3 (ENSMFAG00000041034) ##22 MGMT (ENSMFAG00000051214) ENSMFAG00000053394 MKI67 (ENSMFAG00000037072) ##23 PTPRE (ENSMFAG00000003527) CLRN3 (ENSMFAG00000003701) FOXI2 (ENSMFAG00000057445) NPS (ENSMFAG00000050665) INSYN2A (ENSMFAG00000036937) DOCK1 (ENSMFAG00000045941) C10orf90 (ENSMFAG00000041837) ADAM12 (ENSMFAG00000039461) FANK1 (ENSMFAG00000032085) DHX32 (ENSMFAG00000045315) ENSMFAG00000041850 UROS (ENSMFAG00000043500) Rhesus MODERN SPECIES 19 ENSMMUG00000058183 ADGRA1 (ENSMMUG00000006087) CFAP46 (ENSMMUG00000057584) ENSMMUG00000061205 NKX6-2 (ENSMMUG00000062598) INPP5A (ENSMMUG00000003802) LRRC27 (ENSMMUG00000022366) STK32C (ENSMMUG00000022364) DPYSL4 (ENSMMUG00000022363) ##16 JAKMIP3 (ENSMMUG00000022358) BNIP3 (ENSMMUG00000022445) ##19 PPP2R2D (ENSMMUG00000022443) ##21 TCERG1L (ENSMMUG00000010593) GLRX3 (ENSMMUG00000018429) C10orf143 (ENSMMUG00000056809) EBF3 (ENSMMUG00000011447) ##22 MGMT (ENSMMUG00000011446) ENSMMUG00000059108 ENSMMUG00000064746 ENSMMUG00000063244 MKI67 (ENSMMUG00000044121) ##23 PTPRE (ENSMMUG00000005383) CLRN3 (ENSMMUG00000057106) FOXI2 (ENSMMUG00000052332) NPS (ENSMMUG00000059060) INSYN2A (ENSMMUG00000018550) DOCK1 (ENSMMUG00000018547) C9H10orf90 (ENSMMUG00000009663) ADAM12 (ENSMMUG00000009661) FANK1 (ENSMMUG00000009655) DHX32 (ENSMMUG00000008542) Pig-tailed macaque MODERN SPECIES 92 INPP5A (ENSMNEG00000014000) ENSMNEG00000039362 PWWP2B (ENSMNEG00000042807) LRRC27 (ENSMNEG00000032457) ENSMNEG00000037290 STK32C (ENSMNEG00000038913) DPYSL4 (ENSMNEG00000028602) ##16 JAKMIP3 (ENSMNEG00000037053) BNIP3 (ENSMNEG00000027490) ##19 PPP2R2D (ENSMNEG00000041123) ##21 ENSMNEG00000043061 TCERG1L (ENSMNEG00000040017) GLRX3 (ENSMNEG00000042803) ENSMNEG00000042722 C10orf143 (ENSMNEG00000031982) EBF3 (ENSMNEG00000039157) ##22 MGMT (ENSMNEG00000039334) MKI67 (ENSMNEG00000032752) ##23 ENSMNEG00000039868 PTPRE (ENSMNEG00000032259) CLRN3 (ENSMNEG00000042511) FOXI2 (ENSMNEG00000029819) NPS (ENSMNEG00000027536) INSYN2A (ENSMNEG00000026944) DOCK1 (ENSMNEG00000034603) C10orf90 (ENSMNEG00000036885) ADAM12 (ENSMNEG00000038213) FANK1 (ENSMNEG00000029956) DHX32 (ENSMNEG00000044757) ENSMNEG00000032819 UROS (ENSMNEG00000035411) Cercopithecinae_b ANCESTRAL SPECIES 14 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00390000012628.a.a.d.c.a ENSGT00940000160593 ENSGT00550000075030.m ENSGT01030000234750 ENSGT00950000182767.b.b.d.hb.b.b ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00910000147969 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696.ab Olive baboon MODERN SPECIES 2 ENSPANG00000037621 PWWP2B (ENSPANG00000031758) LRRC27 (ENSPANG00000020135) ENSPANG00000034250 STK32C (ENSPANG00000020132) DPYSL4 (ENSPANG00000020130) ##16 JAKMIP3 (ENSPANG00000020129) BNIP3 (ENSPANG00000020128) ##19 PPP2R2D (ENSPANG00000020156) ##21 ENSPANG00000037952 TCERG1L (ENSPANG00000045000) ENSPANG00000047481 ENSPANG00000024664 GLRX3 (ENSPANG00000020159) C10orf143 (ENSPANG00000035954) EBF3 (ENSPANG00000020188) ##22 MGMT (ENSPANG00000020189) ENSPANG00000045620 ENSPANG00000048991 MKI67 (ENSPANG00000020190) ##23 PTPRE (ENSPANG00000020198) CLRN3 (ENSPANG00000020194) ENSPANG00000050452 FOXI2 (ENSPANG00000020235) NPS (ENSPANG00000020243) DOCK1 (ENSPANG00000020237) INSYN2A (ENSPANG00000020241) C10orf90 (ENSPANG00000020261) ENSPANG00000043403 ADAM12 (ENSPANG00000020265) FANK1 (ENSPANG00000020263) Cercopithecinae_d ANCESTRAL SPECIES 211 ENSGT00940000160593 ENSGT00550000075030.m ENSGT01030000234750 ENSGT00950000182767.b.b.d.hb.b.b ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00910000148118 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 Drill MODERN SPECIES 1666 GLRX3 (ENSMLEG00000031636) C10orf143 (ENSMLEG00000033208) ENSMLEG00000034252 EBF3 (ENSMLEG00000027573) ##22 MGMT (ENSMLEG00000040070) Sooty mangabey MODERN SPECIES 319 TCERG1L (ENSCATG00000011359) GLRX3 (ENSCATG00000003006) C10orf143 (ENSCATG00000007567) ENSCATG00000012229 EBF3 (ENSCATG00000012770) ##22 MGMT (ENSCATG00000002565) MKI67 (ENSCATG00000031996) ##23 PTPRE (ENSCATG00000032563) ENSCATG00000029960 ENSCATG00000033274 CLRN3 (ENSCATG00000034290) FOXI2 (ENSCATG00000031025) NPS (ENSCATG00000034109) Vervet Monkey MODERN SPECIES 28 CFAP46 (ENSCSAG00000004352) NKX6-2 (ENSCSAG00000004366) INPP5A (ENSCSAG00000004369) PWWP2B (ENSCSAG00000004377) LRRC27 (ENSCSAG00000004380) STK32C (ENSCSAG00000004384) DPYSL4 (ENSCSAG00000004390) ##16 JAKMIP3 (ENSCSAG00000004396) BNIP3 (ENSCSAG00000004399) ##19 PPP2R2D (ENSCSAG00000004401) ##21 TCERG1L (ENSCSAG00000004410) GLRX3 (ENSCSAG00000004419) C10orf143 (ENSCSAG00000004426) EBF3 (ENSCSAG00000004432) ##22 MGMT (ENSCSAG00000004436) MKI67 (ENSCSAG00000004442) ##23 PTPRE (ENSCSAG00000004446) CLRN3 (ENSCSAG00000004448) FOXI2 (ENSCSAG00000004451) NPS (ENSCSAG00000004454) INSYN2A (ENSCSAG00000004457) DOCK1 (ENSCSAG00000004464) C10orf90 (ENSCSAG00000004473) ADAM12 (ENSCSAG00000004479) FANK1 (ENSCSAG00000004483) DHX32 (ENSCSAG00000004486) ENSCSAG00000004489 UROS (ENSCSAG00000004491) MMP21 (ENSCSAG00000004494) Rhinopithecus ANCESTRAL SPECIES 705 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.b ENSGT01030000234750 ENSGT00950000182859.A.b ##22 Golden snub-nosed monkey MODERN SPECIES 2690 EBF3 (ENSRROG00000032059) ##22 Black snub-nosed monkey MODERN SPECIES 514 TCERG1L (ENSRBIG00000038246) GLRX3 (ENSRBIG00000043414) ENSRBIG00000044958 C10orf143 (ENSRBIG00000028485) EBF3 (ENSRBIG00000029615) ##22 Hominoidea ANCESTRAL SPECIES 11 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.b ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00910000147135 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.ab Gibbon MODERN SPECIES 18 ENSNLEG00000002037 ADGRA1 (ENSNLEG00000002030) CFAP46 (ENSNLEG00000002014) ENSNLEG00000002002 INPP5A (ENSNLEG00000001956) LRRC27 (ENSNLEG00000001851) STK32C (ENSNLEG00000001762) DPYSL4 (ENSNLEG00000001685) ##16 JAKMIP3 (ENSNLEG00000001649) ENSNLEG00000030570 ##19 PPP2R2D (ENSNLEG00000029271) ##21 ENSNLEG00000001536 ENSNLEG00000027088 C10orf143 (ENSNLEG00000035256) ENSNLEG00000031945 ENSNLEG00000001518 ##22 MGMT (ENSNLEG00000001509) MKI67 (ENSNLEG00000001417) ##23 PTPRE (ENSNLEG00000001341) ENSNLEG00000031469 CLRN3 (ENSNLEG00000000581) FOXI2 (ENSNLEG00000000577) NPS (ENSNLEG00000000575) DOCK1 (ENSNLEG00000000434) INSYN2A (ENSNLEG00000000568) C10orf90 (ENSNLEG00000000894) ADAM12 (ENSNLEG00000000851) FANK1 (ENSNLEG00000000831) DHX32 (ENSNLEG00000000755) ENSNLEG00000000725 UROS (ENSNLEG00000000688) Hominidae ANCESTRAL SPECIES 13 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.b ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.ab ENSGT00390000009853 Orangutan MODERN SPECIES 1 ENSPPYG00000035206 NKX6-2 (ENSPPYG00000002780) INPP5A (ENSPPYG00000002779) ENSPPYG00000002776 LRRC27 (ENSPPYG00000002775) ENSPPYG00000030293 STK32C (ENSPPYG00000002774) DPYSL4 (ENSPPYG00000002773) ##16 JAKMIP3 (ENSPPYG00000002772) ENSPPYG00000002771 ##19 PPP2R2D (ENSPPYG00000002770) ##21 TCERG1L (ENSPPYG00000002769) GLRX3 (ENSPPYG00000002768) ENSPPYG00000002767 C10orf143 (ENSPPYG00000041588) EBF3 (ENSPPYG00000002766) ##22 MGMT (ENSPPYG00000002765) MKI67 (ENSPPYG00000002763) ##23 PTPRE (ENSPPYG00000002762) CLRN3 (ENSPPYG00000002761) FOXI2 (ENSPPYG00000002837) ENSPPYG00000002760 NPS (ENSPPYG00000002759) INSYN2A (ENSPPYG00000002758) DOCK1 (ENSPPYG00000002757) C10orf90 (ENSPPYG00000002756) ADAM12 (ENSPPYG00000002755) FANK1 (ENSPPYG00000002754) DHX32 (ENSPPYG00000002753) BCCIP (ENSPPYG00000002752) UROS (ENSPPYG00000002751) Homo/Pan/Gorilla group ANCESTRAL SPECIES 17 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.b ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.ab ENSGT00390000009853 Homo/Pan group ANCESTRAL SPECIES 18 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.b ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.ab ENSGT00390000009853 Pan ANCESTRAL SPECIES 16 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00410000028211 ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT00950000182767.b.b.d.hb.b.b ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.ab ENSGT00390000009853 Bonobo MODERN SPECIES 1 INPP5A (ENSPPAG00000042036) ENSPPAG00000043287 PWWP2B (ENSPPAG00000030691) LRRC27 (ENSPPAG00000037277) ENSPPAG00000038412 STK32C (ENSPPAG00000041312) DPYSL4 (ENSPPAG00000035043) ##16 JAKMIP3 (ENSPPAG00000040235) ENSPPAG00000042885 ##19 ENSPPAG00000021368 ##21 ENSPPAG00000017086 ENSPPAG00000038899 GLRX3 (ENSPPAG00000039990) ENSPPAG00000043209 C10orf143 (ENSPPAG00000022005) ENSPPAG00000035851 ##22 MGMT (ENSPPAG00000027616) MKI67 (ENSPPAG00000037634) ##23 PTPRE (ENSPPAG00000009555) CLRN3 (ENSPPAG00000040282) FOXI2 (ENSPPAG00000039312) NPS (ENSPPAG00000028558) INSYN2A (ENSPPAG00000035245) DOCK1 (ENSPPAG00000040838) C10orf90 (ENSPPAG00000040831) ADAM12 (ENSPPAG00000028636) ENSPPAG00000035905 FANK1 (ENSPPAG00000027396) DHX32 (ENSPPAG00000034148) ENSPPAG00000021151 UROS (ENSPPAG00000029805) Chimpanzee MODERN SPECIES 1 NKX6-2 (ENSPTRG00000003080) INPP5A (ENSPTRG00000003079) ENSPTRG00000029651 PWWP2B (ENSPTRG00000029653) LRRC27 (ENSPTRG00000003075) ENSPTRG00000045473 STK32C (ENSPTRG00000003074) DPYSL4 (ENSPTRG00000003073) ##16 JAKMIP3 (ENSPTRG00000003069) BNIP3 (ENSPTRG00000003067) ##19 PPP2R2D (ENSPTRG00000003065) ##21 TCERG1L (ENSPTRG00000003063) GLRX3 (ENSPTRG00000003060) ENSPTRG00000043703 C10orf143 (ENSPTRG00000047690) EBF3 (ENSPTRG00000047103) ##22 MGMT (ENSPTRG00000003057) MKI67 (ENSPTRG00000003055) ##23 PTPRE (ENSPTRG00000003054) CLRN3 (ENSPTRG00000043819) FOXI2 (ENSPTRG00000003052) NPS (ENSPTRG00000033882) INSYN2A (ENSPTRG00000003050) DOCK1 (ENSPTRG00000003048) C10H10orf90 (ENSPTRG00000003047) ADAM12 (ENSPTRG00000003046) ENSPTRG00000043029 FANK1 (ENSPTRG00000029661) DHX32 (ENSPTRG00000003044) BCCIP (ENSPTRG00000003043) UROS (ENSPTRG00000003042) Human MODERN SPECIES 1 KNDC1 (ENSG00000171798) ADGRA1 (ENSG00000197177) CFAP46 (ENSG00000171811) NKX6-2 (ENSG00000148826) INPP5A (ENSG00000068383) PWWP2B (ENSG00000171813) LRRC27 (ENSG00000148814) STK32C (ENSG00000165752) DPYSL4 (ENSG00000151640) ##16 JAKMIP3 (ENSG00000188385) BNIP3 (ENSG00000176171) ##19 PPP2R2D (ENSG00000175470) ##21 TCERG1L (ENSG00000176769) GLRX3 (ENSG00000108010) C10orf143 (ENSG00000237489) EBF3 (ENSG00000108001) ##22 MGMT (ENSG00000170430) MKI67 (ENSG00000148773) ##23 PTPRE (ENSG00000132334) CLRN3 (ENSG00000180745) FOXI2 (ENSG00000186766) NPS (ENSG00000214285) INSYN2A (ENSG00000188916) DOCK1 (ENSG00000150760) C10orf90 (ENSG00000154493) ADAM12 (ENSG00000148848) FANK1 (ENSG00000203780) DHX32 (ENSG00000089876) BCCIP (ENSG00000107949) UROS (ENSG00000188690) MMP21 (ENSG00000154485) Gorilla MODERN SPECIES 1 INPP5A (ENSGGOG00000034868) ENSGGOG00000015105 ENSGGOG00000036798 PWWP2B (ENSGGOG00000016986) LRRC27 (ENSGGOG00000034904) ENSGGOG00000036882 STK32C (ENSGGOG00000013188) DPYSL4 (ENSGGOG00000013179) ##16 JAKMIP3 (ENSGGOG00000001448) BNIP3 (ENSGGOG00000014520) ##19 PPP2R2D (ENSGGOG00000001330) ##21 TCERG1L (ENSGGOG00000012281) GLRX3 (ENSGGOG00000010771) ENSGGOG00000038753 C10orf143 (ENSGGOG00000040115) ENSGGOG00000043083 ##22 MGMT (ENSGGOG00000016674) ENSGGOG00000028344 MKI67 (ENSGGOG00000004189) ##23 PTPRE (ENSGGOG00000004177) CLRN3 (ENSGGOG00000013278) FOXI2 (ENSGGOG00000006743) NPS (ENSGGOG00000025181) INSYN2A (ENSGGOG00000006492) DOCK1 (ENSGGOG00000015094) C10orf90 (ENSGGOG00000003162) ADAM12 (ENSGGOG00000000750) FANK1 (ENSGGOG00000005594) DHX32 (ENSGGOG00000010637) ENSGGOG00000010629 UROS (ENSGGOG00000011415) Platyrrhini ANCESTRAL SPECIES 14 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.bb.a ENSGT00390000009853 Mas night monkey MODERN SPECIES 558 EBF3 (ENSANAG00000027567) ##22 MGMT (ENSANAG00000038439) MKI67 (ENSANAG00000031022) ##23 PTPRE (ENSANAG00000034835) CLRN3 (ENSANAG00000025175) FOXI2 (ENSANAG00000031461) NPS (ENSANAG00000023534) INSYN2A (ENSANAG00000027489) DOCK1 (ENSANAG00000033284) C10orf90 (ENSANAG00000029910) ADAM12 (ENSANAG00000030269) ENSANAG00000023341 Cebidae ANCESTRAL SPECIES 17 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.cb ENSGT00390000009853 Marmoset MODERN SPECIES 3 ENSCJAG00000072392 ENSCJAG00000010091 ENSCJAG00000074031 NKX6-2 (ENSCJAG00000010137) INPP5A (ENSCJAG00000076817) PWWP2B (ENSCJAG00000014907) ENSCJAG00000082205 STK32C (ENSCJAG00000080199) DPYSL4 (ENSCJAG00000017679) ##16 JAKMIP3 (ENSCJAG00000000231) BNIP3 (ENSCJAG00000000228) ##19 PPP2R2D (ENSCJAG00000000219) ##21 TCERG1L (ENSCJAG00000014418) ENSCJAG00000014400 C10orf143 (ENSCJAG00000044439) EBF3 (ENSCJAG00000043107) ##22 ENSCJAG00000014351 MKI67 (ENSCJAG00000014323) ##23 PTPRE (ENSCJAG00000014247) CLRN3 (ENSCJAG00000014242) FOXI2 (ENSCJAG00000014240) NPS (ENSCJAG00000059482) INSYN2A (ENSCJAG00000014231) DOCK1 (ENSCJAG00000014082) C10orf90 (ENSCJAG00000012285) ENSCJAG00000084717 ADAM12 (ENSCJAG00000012314) FANK1 (ENSCJAG00000012335) DHX32 (ENSCJAG00000012356) BCCIP (ENSCJAG00000012411) UROS (ENSCJAG00000012453) Cebidae_a ANCESTRAL SPECIES 13 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00910000146909 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030.m ENSGT01030000234750 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00960000187700 ENSGT00940000157227 ENSGT00390000000696.cb ENSGT00390000009853 Bolivian squirrel monkey MODERN SPECIES 47 KNDC1 (ENSSBOG00000025668) ADGRA1 (ENSSBOG00000016578) ENSSBOG00000031369 INPP5A (ENSSBOG00000010737) PWWP2B (ENSSBOG00000014656) LRRC27 (ENSSBOG00000021141) STK32C (ENSSBOG00000032061) DPYSL4 (ENSSBOG00000035659) ##16 JAKMIP3 (ENSSBOG00000024224) BNIP3 (ENSSBOG00000024894) ##19 PPP2R2D (ENSSBOG00000021329) ##21 TCERG1L (ENSSBOG00000030382) GLRX3 (ENSSBOG00000030472) ENSSBOG00000004446 C10orf143 (ENSSBOG00000033100) EBF3 (ENSSBOG00000031246) ##22 MGMT (ENSSBOG00000032500) ENSSBOG00000031494 MKI67 (ENSSBOG00000025516) ##23 PTPRE (ENSSBOG00000029233) ENSSBOG00000019430 CLRN3 (ENSSBOG00000035712) FOXI2 (ENSSBOG00000016469) NPS (ENSSBOG00000031161) DOCK1 (ENSSBOG00000020583) INSYN2A (ENSSBOG00000025092) C10orf90 (ENSSBOG00000034014) ADAM12 (ENSSBOG00000031448) FANK1 (ENSSBOG00000021643) ENSSBOG00000029082 DHX32 (ENSSBOG00000034546) Capuchin DUPLICATION Capuchin MODERN SPECIES 107 ENSCCAG00000023415 ENSCCAG00000019537 SREK1 (ENSCCAG00000020591) ERBIN (ENSCCAG00000036024) NLN (ENSCCAG00000023638) ENSCCAG00000020153 SGTB (ENSCCAG00000035826) TRAPPC13 (ENSCCAG00000026384) TRIM23 (ENSCCAG00000037354) PPWD1 (ENSCCAG00000032580) CENPK (ENSCCAG00000023732) TCERG1L (ENSCCAG00000029266) ENSCCAG00000032838 C10orf143 (ENSCCAG00000037486) EBF3 (ENSCCAG00000035532) ##22 MGMT (ENSCCAG00000036709) MKI67 (ENSCCAG00000033651) ##23 PTPRE (ENSCCAG00000024277) CLRN3 (ENSCCAG00000031649) FOXI2 (ENSCCAG00000030117) NPS (ENSCCAG00000027458) DOCK1 (ENSCCAG00000034899) INSYN2A (ENSCCAG00000030151) ENSCCAG00000028392 C10orf90 (ENSCCAG00000033735) ADAM12 (ENSCCAG00000026413) FANK1 (ENSCCAG00000021326) ENSCCAG00000015509 DHX32 (ENSCCAG00000023341) BCCIP (ENSCCAG00000028010) Capuchin MODERN SPECIES 171 CASP4 (ENSCCAG00000025091) PDGFD (ENSCCAG00000033710) DYNC2H1 (ENSCCAG00000032776) DCUN1D5 (ENSCCAG00000036060) MMP13 (ENSCCAG00000001423) MMP12 (ENSCCAG00000034212) MMP3 (ENSCCAG00000029156) MMP1 (ENSCCAG00000021222) MMP10 (ENSCCAG00000036577) MMP8 (ENSCCAG00000032628) MMP27 (ENSCCAG00000034842) MMP20 (ENSCCAG00000023652) MMP7 (ENSCCAG00000021369) ENSCCAG00000028209 ENSCCAG00000015782 ENSCCAG00000026170 ##22 ENSCCAG00000017186 TMEM123 (ENSCCAG00000021231) BIRC2 (ENSCCAG00000029945) Atlantogenata ANCESTRAL SPECIES 76 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216.db.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E.a ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 ENSGT00390000012491 Afrotheria ANCESTRAL SPECIES 88 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216.db.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E.a ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Afrotheria_a ANCESTRAL SPECIES 92 ENSGT00390000014419 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216.db.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E.a ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Elephant MODERN SPECIES 537 ENSLAFG00000029220 ADGRA1 (ENSLAFG00000021395) ENSLAFG00000012858 ENSLAFG00000022390 NKX6-2 (ENSLAFG00000018008) INPP5A (ENSLAFG00000018003) PWWP2B (ENSLAFG00000022528) LRRC27 (ENSLAFG00000004759) STK32C (ENSLAFG00000018253) DPYSL4 (ENSLAFG00000032390) ##16 JAKMIP3 (ENSLAFG00000004221) BNIP3 (ENSLAFG00000010625) ##19 PPP2R2D (ENSLAFG00000015707) ##21 TCERG1L (ENSLAFG00000018503) GLRX3 (ENSLAFG00000015190) EBF3 (ENSLAFG00000006912) ##22 MGMT (ENSLAFG00000022317) ENSLAFG00000027411 ##23 PTPRE (ENSLAFG00000008470) CLRN3 (ENSLAFG00000017600) FOXI2 (ENSLAFG00000002801) INSYN2A (ENSLAFG00000003245) DOCK1 (ENSLAFG00000003237) ENSLAFG00000011321 ADAM12 (ENSLAFG00000011309) FANK1 (ENSLAFG00000011303) DHX32 (ENSLAFG00000013280) BCCIP (ENSLAFG00000032298) UROS (ENSLAFG00000013271) MMP21 (ENSLAFG00000013270) EDRF1 (ENSLAFG00000013265) Hyrax MODERN SPECIES 798 EBF3 (ENSPCAG00000000348) ##22 Tenrec MODERN SPECIES 1070 EBF3 (ENSETEG00000014060) ##22 Xenarthra ANCESTRAL SPECIES 1622 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 Sloth MODERN SPECIES 857 ENSCHOG00000001509 ##22 Armadillo DUPLICATION Armadillo MODERN SPECIES 2271 ENSDNOG00000037463 ##22 EBF3 (ENSDNOG00000002588) ##22 ENSDNOG00000048245 Armadillo MODERN SPECIES 2271 ENSDNOG00000037463 ##22 EBF3 (ENSDNOG00000002588) ##22 ENSDNOG00000048245 Marsupialia ANCESTRAL SPECIES 38 ENSGT00940000158585.c ENSGT00910000144159.A.b ENSGT00940000163757 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a.o ENSGT00940000156570.a.p ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 Marsupialia_b ANCESTRAL SPECIES ENSGT00390000011408.eb ENSGT00390000011408.fb ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.B ##23 ENSGT00940000156570.a.o ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Diprotodontia ANCESTRAL SPECIES 90 ENSGT00390000011408.eb ENSGT00390000011408.fb ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 Diprotodontia_a ANCESTRAL SPECIES 86 ENSGT00390000011408.eb ENSGT00390000011408.fb ENSGT00940000160175.b ENSGT00570000079216 ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 koala MODERN SPECIES 342 ENSPCIG00000037270 EBF3 (ENSPCIG00000008452) ##22 ENSPCIG00000021045 ENSPCIG00000035725 Common wonbat MODERN SPECIES 1074 ENSVURG00010010946 ADGRA1 (ENSVURG00010010930) NKX6-2 (ENSVURG00010010841) INPP5A (ENSVURG00010010822) ENSVURG00010010798 ENSVURG00010010783 STK32C (ENSVURG00010010769) DPYSL4 (ENSVURG00010010752) ##16 JAKMIP3 (ENSVURG00010010734) BNIP3 (ENSVURG00010010712) ##19 PPP2R2D (ENSVURG00010010684) ##21 TCERG1L (ENSVURG00010010645) ENSVURG00010010635 ENSVURG00010010626 GLRX3 (ENSVURG00010010607) EBF3 (ENSVURG00010010543) ##22 ENSVURG00010010439 Wallaby MODERN SPECIES 1721 EBF3 (ENSMEUG00000010821) ##22 Tasmanian devil MODERN SPECIES 1 ENSSHAG00000027559 ENSSHAG00000029904 ENSSHAG00000027371 ENSSHAG00000003119 ENSSHAG00000000893 NKX6-2 (ENSSHAG00000025952) INPP5A (ENSSHAG00000001898) ENSSHAG00000009640 STK32C (ENSSHAG00000008001) DPYSL4 (ENSSHAG00000007352) ##16 JAKMIP3 (ENSSHAG00000006010) PPP2R2D (ENSSHAG00000002913) ##21 ENSSHAG00000030744 TCERG1L (ENSSHAG00000031422) GLRX3 (ENSSHAG00000005817) EBF3 (ENSSHAG00000000353) ##22 ENSSHAG00000028096 ENSSHAG00000027038 ##23 ENSSHAG00000031175 ENSSHAG00000000360 ENSSHAG00000023519 CLRN3 (ENSSHAG00000028413) ENSSHAG00000006952 ENSSHAG00000025114 INSYN2A (ENSSHAG00000026318) DOCK1 (ENSSHAG00000015107) ENSSHAG00000029926 ENSSHAG00000013645 ADAM12 (ENSSHAG00000011484) FANK1 (ENSSHAG00000011252) DHX32 (ENSSHAG00000010635) Opossum DUPLICATION Opossum MODERN SPECIES ENSMODG00000006953 ##23 PTPRE (ENSMODG00000006941) ENSMODG00000043197 CLRN3 (ENSMODG00000006911) ENSMODG00000006906 NPS (ENSMODG00000029056) ENSMODG00000036674 ENSMODG00000006903 ENSMODG00000041358 STK32C (ENSMODG00000013531) ENSMODG00000043721 #16 JAKMIP3 (ENSMODG00000013518) ENSMODG00000045876 TCERG1L (ENSMODG00000013493) GLRX3 (ENSMODG00000013483) ENSMODG00000016695 ##22 Opossum MODERN SPECIES 353 ENSMODG00000022792 ##22 ENSMODG00000046072 Sauria ANCESTRAL SPECIES 8 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 Archelosauria ANCESTRAL SPECIES 10 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 Cryptodira ANCESTRAL SPECIES 6 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Testudinoidea ANCESTRAL SPECIES 2 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a.k ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C.q ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Emydidae ANCESTRAL SPECIES 6 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a.k ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C.q ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 painted turtle MODERN SPECIES 727 LRP1B (ENSCPBG00000007349) ENSCPBG00000007285 ENSCPBG00000007243 ENSCPBG00000007226 NXPH2 (ENSCPBG00000007218) SPOPL (ENSCPBG00000007203) HNMT (ENSCPBG00000007188) GLRX3 (ENSCPBG00000007167) EBF3 (ENSCPBG00000007143) ##22 MGMT (ENSCPBG00000007107) ENSCPBG00000007073 #23 PTPRE (ENSCPBG00000007024) CLRN3 (ENSCPBG00000007005) ENSCPBG00000007001 INSYN2A (ENSCPBG00000006992) DOCK1 (ENSCPBG00000006956) Three-toed box turtle MODERN SPECIES 39 ENSTMTG00000015098 ENSTMTG00000015068 ENSTMTG00000015034 ENSTMTG00000015005 NKX6-2 (ENSTMTG00000014987) INPP5A (ENSTMTG00000014936) PWWP2B (ENSTMTG00000014912) LRRC27 (ENSTMTG00000014898) STK32C (ENSTMTG00000014863) DPYSL4 (ENSTMTG00000014557) ##16 JAKMIP3 (ENSTMTG00000014491) BNIP3 (ENSTMTG00000014470) ##19 PPP2R2D (ENSTMTG00000014455) ##21 TCERG1L (ENSTMTG00000014402) GLRX3 (ENSTMTG00000014369) EBF3 (ENSTMTG00000014291) ##22 MGMT (ENSTMTG00000014270) ENSTMTG00000014255 ENSTMTG00000014237 ENSTMTG00000020331 CLRN3 (ENSTMTG00000020325) ENSTMTG00000020323 NPS (ENSTMTG00000020318) INSYN2A (ENSTMTG00000020307) DOCK1 (ENSTMTG00000020264) C10orf90 (ENSTMTG00000020251) ADAM12 (ENSTMTG00000019826) FANK1 (ENSTMTG00000019738) BCCIP (ENSTMTG00000019719) UROS (ENSTMTG00000019712) EDRF1 (ENSTMTG00000019646) Testudinidae ANCESTRAL SPECIES 9 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a.l ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C.q ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 Abingdon island giant tortoise MODERN SPECIES 87 EBF3 (ENSCABG00000022783) ##22 MGMT (ENSCABG00000022786) Goode s thornscrub tortoise MODERN SPECIES 21 ENSGEVG00005018774 ENSGEVG00005018702 ENSGEVG00005018656 NKX6-2 (ENSGEVG00005018624) INPP5A (ENSGEVG00005018557) PWWP2B (ENSGEVG00005018522) LRRC27 (ENSGEVG00005018494) STK32C (ENSGEVG00005018456) DPYSL4 (ENSGEVG00005018161) ##16 JAKMIP3 (ENSGEVG00005017824) BNIP3 (ENSGEVG00005017778) ##19 PPP2R2D (ENSGEVG00005017762) ##21 TCERG1L (ENSGEVG00005017717) GLRX3 (ENSGEVG00005017697) ENSGEVG00005017678 EBF3 (ENSGEVG00005017519) ##22 MGMT (ENSGEVG00005017500) ENSGEVG00005017481 #23 PTPRE (ENSGEVG00005017413) CLRN3 (ENSGEVG00005017382) ENSGEVG00005017357 NPS (ENSGEVG00005017336) INSYN2A (ENSGEVG00005017297) DOCK1 (ENSGEVG00005013649) C10orf90 (ENSGEVG00005012981) ADAM12 (ENSGEVG00005012611) FANK1 (ENSGEVG00005012339) BCCIP (ENSGEVG00005012179) UROS (ENSGEVG00005012099) EDRF1 (ENSGEVG00005012029) TEX36 (ENSGEVG00005011932) Chinese turtle MODERN SPECIES 2119 ENSPSIG00000000977 ENSPSIG00000010241 ENSPSIG00000010623 NKX6-2 (ENSPSIG00000010754) INPP5A (ENSPSIG00000010759) PWWP2B (ENSPSIG00000000984) LRRC27 (ENSPSIG00000011645) STK32C (ENSPSIG00000011894) DPYSL4 (ENSPSIG00000012836) ##16 JAKMIP3 (ENSPSIG00000015597) BNIP3 (ENSPSIG00000016160) ##19 PPP2R2D (ENSPSIG00000016439) ##21 TCERG1L (ENSPSIG00000016629) ENSPSIG00000000994 GLRX3 (ENSPSIG00000016674) EBF3 (ENSPSIG00000016691) ##22 MGMT (ENSPSIG00000017405) Archosauria ANCESTRAL SPECIES 7 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 Australian saltwater crocodile MODERN SPECIES 68 ENSCPRG00005007081 ENSCPRG00005007089 NKX6-2 (ENSCPRG00005007090) INPP5A (ENSCPRG00005007113) PWWP2B (ENSCPRG00005007131) LRRC27 (ENSCPRG00005007134) STK32C (ENSCPRG00005007162) DPYSL4 (ENSCPRG00005007536) ##16 JAKMIP3 (ENSCPRG00005009443) BNIP3 (ENSCPRG00005009525) ##19 PPP2R2D (ENSCPRG00005009526) ##21 TCERG1L (ENSCPRG00005009534) GLRX3 (ENSCPRG00005009549) EBF3 (ENSCPRG00005009556) ##22 MGMT (ENSCPRG00005009563) ENSCPRG00005009575 #23 PTPRE (ENSCPRG00005009590) CLRN3 (ENSCPRG00005009600) ENSCPRG00005009606 NPS (ENSCPRG00005009610) DOCK1 (ENSCPRG00005009650) INSYN2A (ENSCPRG00005009660) C10orf90 (ENSCPRG00005009670) ADAM12 (ENSCPRG00005009683) FANK1 (ENSCPRG00005009698) DHX32 (ENSCPRG00005009704) BCCIP (ENSCPRG00005009713) UROS (ENSCPRG00005009716) EDRF1 (ENSCPRG00005009723) Aves ANCESTRAL SPECIES 6 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 African ostrich DUPLICATION African ostrich MODERN SPECIES 463 ENSSCUG00000007588 ENSSCUG00000007590 ENSSCUG00000007601 INPP5A (ENSSCUG00000007608) PWWP2B (ENSSCUG00000007616) LRRC27 (ENSSCUG00000007618) STK32C (ENSSCUG00000007622) DPYSL4 (ENSSCUG00000007637) ##16 JAKMIP3 (ENSSCUG00000007646) BNIP3 (ENSSCUG00000007653) ##19 PPP2R2D (ENSSCUG00000007655) ##21 ENSSCUG00000007658 TCERG1L (ENSSCUG00000007664) GLRX3 (ENSSCUG00000007671) ENSSCUG00000007676 ##22 ENSSCUG00000007680 ##22 MGMT (ENSSCUG00000007684) ENSSCUG00000007692 #23 PTPRE (ENSSCUG00000007735) CLRN3 (ENSSCUG00000007769) NPS (ENSSCUG00000007770) DOCK1 (ENSSCUG00000007775) C10orf90 (ENSSCUG00000007778) ADAM12 (ENSSCUG00000007780) DHX32 (ENSSCUG00000007786) BCCIP (ENSSCUG00000007788) UROS (ENSSCUG00000007791) ENSSCUG00000007792 ENSSCUG00000007793 ENSSCUG00000007795 ZRANB1 (ENSSCUG00000007796) African ostrich MODERN SPECIES 463 TCTN3 (ENSSCUG00000007583) ENSSCUG00000007588 ENSSCUG00000007590 ENSSCUG00000007601 INPP5A (ENSSCUG00000007608) PWWP2B (ENSSCUG00000007616) LRRC27 (ENSSCUG00000007618) STK32C (ENSSCUG00000007622) DPYSL4 (ENSSCUG00000007637) ##16 JAKMIP3 (ENSSCUG00000007646) BNIP3 (ENSSCUG00000007653) ##19 PPP2R2D (ENSSCUG00000007655) ##21 ENSSCUG00000007658 TCERG1L (ENSSCUG00000007664) GLRX3 (ENSSCUG00000007671) ENSSCUG00000007676 ##22 ENSSCUG00000007680 ##22 MGMT (ENSSCUG00000007684) ENSSCUG00000007692 #23 PTPRE (ENSSCUG00000007735) CLRN3 (ENSSCUG00000007769) NPS (ENSSCUG00000007770) DOCK1 (ENSSCUG00000007775) C10orf90 (ENSSCUG00000007778) ADAM12 (ENSSCUG00000007780) DHX32 (ENSSCUG00000007786) BCCIP (ENSSCUG00000007788) UROS (ENSSCUG00000007791) ENSSCUG00000007792 ENSSCUG00000007793 ENSSCUG00000007795 Neognathae ANCESTRAL SPECIES 7 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Galloanserae ANCESTRAL SPECIES 6 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Phasianidae ANCESTRAL SPECIES 6 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 ENSGT00940000158045 Phasianidae_b ANCESTRAL SPECIES 6 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 ENSGT00940000158045 Chicken MODERN SPECIES 35 ALDH18A1 (ENSGALG00010001692) TCTN3 (ENSGALG00010001661) OPNVA (ENSGALG00010001616) NKX6-2 (ENSGALG00010001577) INPP5A (ENSGALG00010001567) PWWP2B (ENSGALG00010001547) STK32C (ENSGALG00010001527) DPYSL4 (ENSGALG00010001506) ##16 JAKMIP3 (ENSGALG00010001480) BNIP3 (ENSGALG00010001382) ##19 PPP2R2D (ENSGALG00010001369) ##21 TCERG1L (ENSGALG00010001358) GLRX3 (ENSGALG00010001353) EBF3 (ENSGALG00010001334) ##22 MGMT (ENSGALG00010001308) ENSGALG00010002750 #23 PTPRE (ENSGALG00010002712) CLRN3 (ENSGALG00010002617) NPS (ENSGALG00010002611) INSYN2A (ENSGALG00010002603) DOCK1 (ENSGALG00010002587) ENSGALG00010003206 ENSGALG00010002582 ADAM12 (ENSGALG00010002570) DHX32 (ENSGALG00010002497) BCCIP (ENSGALG00010002487) UROS (ENSGALG00010002466) EDRF1 (ENSGALG00010002445) TEX36 (ENSGALG00010002426) Turkey MODERN SPECIES 28 ENSMGAG00000011826 ENSMGAG00000016563 ##22 GLRX3 (ENSMGAG00000012648) ENSMGAG00000011844 ##19 ENSMGAG00000011837 ##21 ENSMGAG00000019998 ##19 JAKMIP3 (ENSMGAG00000011861) ENSMGAG00000011869 ##16 ENSMGAG00000011859 ENSMGAG00000011899 ENSMGAG00000015341 ENSMGAG00000011907 ENSMGAG00000011912 ENSMGAG00000011914 ENSMGAG00000011290 ENSMGAG00000015338 ENSMGAG00000011298 Japanese quail MODERN SPECIES 24 ALDH18A1 (ENSCJPG00005004248) ENSCJPG00005004209 ENSCJPG00005004208 NKX6-2 (ENSCJPG00005004206) INPP5A (ENSCJPG00005004193) PWWP2B (ENSCJPG00005004191) STK32C (ENSCJPG00005004188) DPYSL4 (ENSCJPG00005001567) ##16 JAKMIP3 (ENSCJPG00005001465) ENSCJPG00005001397 ##19 PPP2R2D (ENSCJPG00005001393) ##21 TCERG1L (ENSCJPG00005001381) GLRX3 (ENSCJPG00005001349) EBF3 (ENSCJPG00005001333) ##22 MGMT (ENSCJPG00005001320) ENSCJPG00005001294 #23 PTPRE (ENSCJPG00005001286) CLRN3 (ENSCJPG00005001282) NPS (ENSCJPG00005001270) INSYN2A (ENSCJPG00005001268) DOCK1 (ENSCJPG00005001240) C10orf90 (ENSCJPG00005001219) ADAM12 (ENSCJPG00005001198) DHX32 (ENSCJPG00005001188) BCCIP (ENSCJPG00005001184) UROS (ENSCJPG00005001169) EDRF1 (ENSCJPG00005001118) TEX36 (ENSCJPG00005001093) CTBP2 (ENSCJPG00005001082) Anatidae ANCESTRAL SPECIES 4 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Pink-footed goose MODERN SPECIES 74 PWWP2B (ENSABRG00000005286) LRRC27 (ENSABRG00000005292) STK32C (ENSABRG00000005299) DPYSL4 (ENSABRG00000005424) ##16 JAKMIP3 (ENSABRG00000005480) BNIP3 (ENSABRG00000005764) ##19 PPP2R2D (ENSABRG00000005773) ##21 TCERG1L (ENSABRG00000005804) GLRX3 (ENSABRG00000005859) ENSABRG00000005867 EBF3 (ENSABRG00000005880) ##22 MGMT (ENSABRG00000005930) ENSABRG00000005981 #23 PTPRE (ENSABRG00000006050) CLRN3 (ENSABRG00000006071) NPS (ENSABRG00000006088) DOCK1 (ENSABRG00000006103) INSYN2A (ENSABRG00000006160) C10orf90 (ENSABRG00000006215) ADAM12 (ENSABRG00000006234) DHX32 (ENSABRG00000006292) BCCIP (ENSABRG00000006379) UROS (ENSABRG00000006392) EDRF1 (ENSABRG00000006414) TEX36 (ENSABRG00000006456) CTBP2 (ENSABRG00000006461) Duck DUPLICATION Duck MODERN SPECIES 24 ALDH18A1 (ENSAPLG00000006363) TCTN3 (ENSAPLG00000006229) ENSAPLG00000006027 ENSAPLG00000005542 INPP5A (ENSAPLG00000005286) PWWP2B (ENSAPLG00000005281) LRRC27 (ENSAPLG00000023192) ENSAPLG00000018848 STK32C (ENSAPLG00000004989) DPYSL4 (ENSAPLG00000003668) ##16 JAKMIP3 (ENSAPLG00000003318) BNIP3 (ENSAPLG00000005950) ##19 PPP2R2D (ENSAPLG00000006225) ##21 TCERG1L (ENSAPLG00000012399) GLRX3 (ENSAPLG00000012790) ENSAPLG00000012647 ##22 MGMT (ENSAPLG00000030688) PTPRE (ENSAPLG00000009861) CLRN3 (ENSAPLG00000023018) FOXI2 (ENSAPLG00000027337) NPS (ENSAPLG00000029354) INSYN2A (ENSAPLG00000017772) DOCK1 (ENSAPLG00000010685) C10orf90 (ENSAPLG00000010978) ADAM12 (ENSAPLG00000011037) DHX32 (ENSAPLG00000012133) BCCIP (ENSAPLG00000012566) UROS (ENSAPLG00000012701) EDRF1 (ENSAPLG00000012708) TEX36 (ENSAPLG00000013143) CTBP2 (ENSAPLG00000014447) Duck DUPLICATION Duck MODERN SPECIES 185 ENSAPLG00000022127 ##22 Duck MODERN SPECIES 444 ENSAPLG00000025040 ##22 Duck MODERN SPECIES 3765 ENSAPLG00000022469 ##22 Neognathae_b ANCESTRAL SPECIES 8 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Passeriformes ANCESTRAL SPECIES 10 ENSGT00550000074897 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000170313 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00950000183683 ENSGT00940000154430 ENSGT00940000158045 Great tit MODERN SPECIES 26 ENSPMJG00000006130 NKX6-2 (ENSPMJG00000006128) INPP5A (ENSPMJG00000006120) ENSPMJG00000006106 STK32C (ENSPMJG00000006041) DPYSL4 (ENSPMJG00000006037) ##16 JAKMIP3 (ENSPMJG00000006028) BNIP3 (ENSPMJG00000006026) ##19 ENSPMJG00000006025 ##21 ENSPMJG00000006022 ##21 GLRX3 (ENSPMJG00000006006) ENSPMJG00000005996 ENSPMJG00000005989 TCERG1L (ENSPMJG00000005986) ENSPMJG00000005982 EBF3 (ENSPMJG00000005976) ##22 MGMT (ENSPMJG00000005964) PTPRE (ENSPMJG00000005940) CLRN3 (ENSPMJG00000005939) ENSPMJG00000005938 INSYN2A (ENSPMJG00000005937) DOCK1 (ENSPMJG00000005930) C10orf90 (ENSPMJG00000005922) ADAM12 (ENSPMJG00000005918) DHX32 (ENSPMJG00000005913) BCCIP (ENSPMJG00000005912) UROS (ENSPMJG00000005911) EDRF1 (ENSPMJG00000005907) ENSPMJG00000005905 CTBP2 (ENSPMJG00000005884) ZRANB1 (ENSPMJG00000005856) Passeriformes_d ANCESTRAL SPECIES 7 ENSGT00550000074897 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000170313 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00950000183683 ENSGT00940000154430 ENSGT00940000158045 Flycatcher MODERN SPECIES 25 ENSFALG00000027003 ENSFALG00000001323 NKX6-2 (ENSFALG00000001316) INPP5A (ENSFALG00000001313) ENSFALG00000022932 STK32C (ENSFALG00000001306) DPYSL4 (ENSFALG00000027125) ##16 ENSFALG00000001278 #16 JAKMIP3 (ENSFALG00000001258) ENSFALG00000023307 BNIP3 (ENSFALG00000001247) ##19 PPP2R2D (ENSFALG00000001234) ##21 ENSFALG00000023916 TCERG1L (ENSFALG00000027291) GLRX3 (ENSFALG00000001218) EBF3 (ENSFALG00000001212) ##22 MGMT (ENSFALG00000001209) ENSFALG00000026486 ENSFALG00000023643 ENSFALG00000001204 #23 PTPRE (ENSFALG00000001201) CLRN3 (ENSFALG00000023614) ENSFALG00000014812 ENSFALG00000023045 INSYN2A (ENSFALG00000001196) DOCK1 (ENSFALG00000001117) C10orf90 (ENSFALG00000001074) ADAM12 (ENSFALG00000001070) DHX32 (ENSFALG00000001048) BCCIP (ENSFALG00000001029) UROS (ENSFALG00000001024) Passeriformes_g ANCESTRAL SPECIES 8 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00940000160573.a ENSGT00940000160573.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000170313 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00950000183683 ENSGT00940000154430 ENSGT00940000158045 Passeroidea ANCESTRAL SPECIES 7 ENSGT00550000074897 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00940000160573.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000170313 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00950000183683 ENSGT00940000154430 ENSGT00940000158045 Zebra finch MODERN SPECIES 28 ENSTGUG00000029017 ENSTGUG00000022770 ##16 ENSTGUG00000027640 ENSTGUG00000021176 ENSTGUG00000025290 ##21 ENSTGUG00000011634 ENSTGUG00000020450 ENSTGUG00000011674 ENSTGUG00000011662 ENSTGUG00000011657 ##16 ENSTGUG00000011644 BNIP3 (ENSTGUG00000022111) ##19 ENSTGUG00000011637 ##21 ENSTGUG00000024585 GLRX3 (ENSTGUG00000011623) EBF3 (ENSTGUG00000011600) ##22 MGMT (ENSTGUG00000023939) ENSTGUG00000021193 #23 PTPRE (ENSTGUG00000011558) CLRN3 (ENSTGUG00000011555) ENSTGUG00000011554 INSYN2A (ENSTGUG00000011540) DOCK1 (ENSTGUG00000011514) C10orf90 (ENSTGUG00000024288) ADAM12 (ENSTGUG00000011498) ENSTGUG00000011493 ENSTGUG00000011491 BCCIP (ENSTGUG00000011485) UROS (ENSTGUG00000011481) EDRF1 (ENSTGUG00000011472) ENSTGUG00000016414 Common canary MODERN SPECIES 7 TCTN3 (ENSSCAG00000009979) ENSSCAG00000010010 ENSSCAG00000010025 NKX6-2 (ENSSCAG00000010038) INPP5A (ENSSCAG00000010070) ENSSCAG00000010141 STK32C (ENSSCAG00000010150) DPYSL4 (ENSSCAG00000010192) ##16 JAKMIP3 (ENSSCAG00000010331) BNIP3 (ENSSCAG00000010352) ##19 PPP2R2D (ENSSCAG00000010356) ##21 ENSSCAG00000010361 TCERG1L (ENSSCAG00000010367) ENSSCAG00000010378 GLRX3 (ENSSCAG00000010380) EBF3 (ENSSCAG00000010428) ##22 MGMT (ENSSCAG00000010591) ENSSCAG00000010598 ENSSCAG00000010606 #23 PTPRE (ENSSCAG00000010632) CLRN3 (ENSSCAG00000010680) ENSSCAG00000010686 ENSSCAG00000010691 C10orf90 (ENSSCAG00000010706) DOCK1 (ENSSCAG00000011158) INSYN2A (ENSSCAG00000013261) ADAM12 (ENSSCAG00000013286) DHX32 (ENSSCAG00000013331) BCCIP (ENSSCAG00000013344) UROS (ENSSCAG00000013356) EDRF1 (ENSSCAG00000013392) Medium ground finch MODERN SPECIES 72 EBF3 (ENSGFOG00000006630) ##22 MGMT (ENSGFOG00000006627) ENSGFOG00000006615 #23 PTPRE (ENSGFOG00000006603) CLRN3 (ENSGFOG00000006590) ENSGFOG00000006582 DOCK1 (ENSGFOG00000006527) C10orf90 (ENSGFOG00000006514) ADAM12 (ENSGFOG00000006402) DHX32 (ENSGFOG00000006380) BCCIP (ENSGFOG00000006370) UROS (ENSGFOG00000006355) EDRF1 (ENSGFOG00000006339) CTBP2 (ENSGFOG00000006333) ZRANB1 (ENSGFOG00000006329) ABRAXAS2 (ENSGFOG00000013846) Neognathae_c ANCESTRAL SPECIES 8 ENSGT00500000044903 ENSGT00570000079101.a.a ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Kakapo MODERN SPECIES 22 ALDH18A1 (ENSSHBG00005000335) TCTN3 (ENSSHBG00005000332) ENSSHBG00005000327 ENSSHBG00005007953 NKX6-2 (ENSSHBG00005007927) INPP5A (ENSSHBG00005007898) PWWP2B (ENSSHBG00005007882) ENSSHBG00005007862 STK32C (ENSSHBG00005007817) DPYSL4 (ENSSHBG00005007798) ##16 JAKMIP3 (ENSSHBG00005007771) BNIP3 (ENSSHBG00005007749) ##19 PPP2R2D (ENSSHBG00005007723) ##21 TCERG1L (ENSSHBG00005007703) GLRX3 (ENSSHBG00005007676) EBF3 (ENSSHBG00005007619) ##22 MGMT (ENSSHBG00005007589) ENSSHBG00005007566 #23 ENSSHBG00005007545 ENSSHBG00005007521 CLRN3 (ENSSHBG00005007508) FOXI2 (ENSSHBG00005007503) NPS (ENSSHBG00005007496) INSYN2A (ENSSHBG00005007484) DOCK1 (ENSSHBG00005005385) C10orf90 (ENSSHBG00005005082) ADAM12 (ENSSHBG00005004698) ENSSHBG00005004575 ENSSHBG00005004565 BCCIP (ENSSHBG00005004551) UROS (ENSSHBG00005004544) Golden eagle MODERN SPECIES 2 ALDH18A1 (ENSACCG00020005309) TCTN3 (ENSACCG00020005331) ENSACCG00020005371 ENSACCG00020005416 NKX6-2 (ENSACCG00020005430) INPP5A (ENSACCG00020005453) PWWP2B (ENSACCG00020005473) LRRC27 (ENSACCG00020005494) STK32C (ENSACCG00020005571) DPYSL4 (ENSACCG00020005629) ##16 JAKMIP3 (ENSACCG00020005746) BNIP3 (ENSACCG00020005794) ##19 PPP2R2D (ENSACCG00020005812) ##21 TCERG1L (ENSACCG00020005831) GLRX3 (ENSACCG00020005849) EBF3 (ENSACCG00020005883) ##22 MGMT (ENSACCG00020005905) PTPRE (ENSACCG00020005933) CLRN3 (ENSACCG00020005951) FOXI2 (ENSACCG00020005964) NPS (ENSACCG00020005979) DOCK1 (ENSACCG00020006016) INSYN2A (ENSACCG00020006055) C10orf90 (ENSACCG00020006070) ADAM12 (ENSACCG00020006113) ENSACCG00020006158 ENSACCG00020006168 BCCIP (ENSACCG00020006208) UROS (ENSACCG00020006244) EDRF1 (ENSACCG00020006265) TEX36 (ENSACCG00020006300) Lepidosauria ANCESTRAL SPECIES 8 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 tuatara MODERN SPECIES 1093 GLRX3 (ENSSPUG00000014414) EBF3 (ENSSPUG00000014385) ##22 MGMT (ENSSPUG00000014367) Episquamata ANCESTRAL SPECIES 2 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Laterata ANCESTRAL SPECIES ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00400000024769 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 Argentine black and white tegu MODERN SPECIES 58 ENSSMRG00000005305 GLRX3 (ENSSMRG00000005299) EBF3 (ENSSMRG00000005270) ##22 ENSSMRG00000005262 MGMT (ENSSMRG00000005256) ENSSMRG00000005235 #23 PTPRE (ENSSMRG00000005213) CLRN3 (ENSSMRG00000005207) ENSSMRG00000005195 ENSSMRG00000005191 NPS (ENSSMRG00000005186) INSYN2A (ENSSMRG00000005178) DOCK1 (ENSSMRG00000005128) C10orf90 (ENSSMRG00000005097) ADAM12 (ENSSMRG00000005049) FANK1 (ENSSMRG00000005028) BCCIP (ENSSMRG00000005023) UROS (ENSSMRG00000005003) Common wall lizard MODERN SPECIES 13 ENSPMRG00000005259 ENSPMRG00000005267 NKX6-2 (ENSPMRG00000005270) INPP5A (ENSPMRG00000005278) ENSPMRG00000005301 ENSPMRG00000005307 PWWP2B (ENSPMRG00000005312) LRRC27 (ENSPMRG00000005316) STK32C (ENSPMRG00000005324) DPYSL4 (ENSPMRG00000005351) ##16 ENSPMRG00000005434 BNIP3 (ENSPMRG00000005632) ##19 PPP2R2D (ENSPMRG00000005644) ##21 TCERG1L (ENSPMRG00000005659) GLRX3 (ENSPMRG00000005668) EBF3 (ENSPMRG00000005686) ##22 MGMT (ENSPMRG00000005719) ENSPMRG00000005729 ENSPMRG00000005736 ENSPMRG00000005744 #23 PTPRE (ENSPMRG00000005760) CLRN3 (ENSPMRG00000005779) ENSPMRG00000005790 DOCK1 (ENSPMRG00000005984) INSYN2A (ENSPMRG00000005741) C10orf90 (ENSPMRG00000005758) ADAM12 (ENSPMRG00000005786) FANK1 (ENSPMRG00000005824) DHX32 (ENSPMRG00000005833) BCCIP (ENSPMRG00000005844) UROS (ENSPMRG00000005850) Toxicofera ANCESTRAL SPECIES 2 ENSGT00940000160175.b ENSGT00940000164278 ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Lizard MODERN SPECIES 2 INPP5A (ENSACAG00000005748) PWWP2B (ENSACAG00000007567) ENSACAG00000007576 STK32C (ENSACAG00000007586) DPYSL4 (ENSACAG00000007703) ##16 JAKMIP3 (ENSACAG00000007932) BNIP3 (ENSACAG00000008046) ##19 PPP2R2D (ENSACAG00000008068) ##21 ENSACAG00000045209 TCERG1L (ENSACAG00000008136) ENSACAG00000034797 ENSACAG00000042148 ENSACAG00000035655 GLRX3 (ENSACAG00000015736) ENSACAG00000035596 EBF3 (ENSACAG00000008590) ##22 ENSACAG00000044359 MGMT (ENSACAG00000008585) ENSACAG00000040796 ENSACAG00000020986 #23 ENSACAG00000007662 PTPRE (ENSACAG00000007467) CLRN3 (ENSACAG00000007466) ENSACAG00000042718 NPS (ENSACAG00000039369) ENSACAG00000038014 INSYN2A (ENSACAG00000007298) DOCK1 (ENSACAG00000007299) ENSACAG00000007157 ENSACAG00000040780 ENSACAG00000000498 Elapidae DUPLICATION Elapidae DUPLICATION Elapidae ANCESTRAL SPECIES ENSGT00950000182859.A.b.t.a ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182859.A.b.t.a ##22 Blue-lipped sea krait MODERN SPECIES 5539 ENSLLTG00000006293 ##22 Indian cobra MODERN SPECIES 3 ENSNNAG00000018247 ADGRA1 (ENSNNAG00000018253) ENSNNAG00000018261 ENSNNAG00000018284 NKX6-2 (ENSNNAG00000018356) INPP5A (ENSNNAG00000018361) PWWP2B (ENSNNAG00000018369) LRRC27 (ENSNNAG00000018373) STK32C (ENSNNAG00000018377) DPYSL4 (ENSNNAG00000018387) ##16 JAKMIP3 (ENSNNAG00000018405) BNIP3 (ENSNNAG00000018415) ##19 PPP2R2D (ENSNNAG00000018421) ##21 TCERG1L (ENSNNAG00000018427) GLRX3 (ENSNNAG00000018441) EBF3 (ENSNNAG00000018447) ##22 MGMT (ENSNNAG00000018454) ENSNNAG00000018458 ENSNNAG00000018459 #23 PTPRE (ENSNNAG00000018466) CLRN3 (ENSNNAG00000018476) ENSNNAG00000018479 ENSNNAG00000003028 DOCK1 (ENSNNAG00000003118) INSYN2A (ENSNNAG00000003160) ENSNNAG00000003178 C10orf90 (ENSNNAG00000003185) ADAM12 (ENSNNAG00000003205) FANK1 (ENSNNAG00000003240) BCCIP (ENSNNAG00000003261) UROS (ENSNNAG00000003279) Elapidae ANCESTRAL SPECIES ENSGT00950000182859.A.b.t.b ##22 Elapidae_a ANCESTRAL SPECIES ENSGT00950000182859.A.b.t.b ##22 Blue-lipped sea krait MODERN SPECIES 9988 ENSLLTG00000012846 ##22 Elapidae ANCESTRAL SPECIES 4 ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b.u ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00990000209592 ENSGT00940000154974 ENSGT00530000063787.B ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 Elapidae_a ANCESTRAL SPECIES ENSGT00390000011408 ENSGT00940000160175.b ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b.u ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00990000209592 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 Acanthophiinae ANCESTRAL SPECIES 1 ENSGT00940000160175.b ENSGT00570000079216 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00390000013127.a.s ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b.u ##22 ENSGT00390000015799 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00990000209592 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00390000000696 ENSGT00390000009853 ENSGT00390000014797 ENSGT00390000012491 ENSGT00940000154430 Eastern brown snake MODERN SPECIES 48 ENSPTXG00000006921 ADGRA1 (ENSPTXG00000006920) ENSPTXG00000006910 ENSPTXG00000006602 NKX6-2 (ENSPTXG00000006600) INPP5A (ENSPTXG00000006599) ENSPTXG00000006598 PWWP2B (ENSPTXG00000006597) STK32C (ENSPTXG00000006427) DPYSL4 (ENSPTXG00000006426) ##16 JAKMIP3 (ENSPTXG00000006332) BNIP3 (ENSPTXG00000006323) ##19 PPP2R2D (ENSPTXG00000006320) ##21 TCERG1L (ENSPTXG00000006317) GLRX3 (ENSPTXG00000006314) EBF3 (ENSPTXG00000006293) ##22 MGMT (ENSPTXG00000006288) ENSPTXG00000006286 Mainland tiger snake MODERN SPECIES 34 ADGRA1 (ENSNSUG00000012287) ENSNSUG00000012272 ENSNSUG00000012003 NKX6-2 (ENSNSUG00000012001) INPP5A (ENSNSUG00000012000) ENSNSUG00000011999 PWWP2B (ENSNSUG00000011998) ENSNSUG00000011996 STK32C (ENSNSUG00000011995) DPYSL4 (ENSNSUG00000011972) ##16 JAKMIP3 (ENSNSUG00000011971) BNIP3 (ENSNSUG00000011970) ##19 PPP2R2D (ENSNSUG00000011293) ##21 TCERG1L (ENSNSUG00000011287) GLRX3 (ENSNSUG00000011286) EBF3 (ENSNSUG00000011251) ##22 MGMT (ENSNSUG00000011250) PTPRE (ENSNSUG00000011131) CLRN3 (ENSNSUG00000011129) ENSNSUG00000011126 ENSNSUG00000011125 Blue-lipped sea krait MODERN SPECIES 5989 ENSLLTG00000006583 ##22 Coelacanth DUPLICATION Coelacanth DUPLICATION Coelacanth MODERN SPECIES 2249 GLRX3 (ENSLACG00000004685) ebf3a (ENSLACG00000001966) ##22 Coelacanth MODERN SPECIES 1421 CPXM1 (ENSLACG00000011919) ENSLACG00000011800 ENSLACG00000011675 ENSLACG00000011396 ENSLACG00000022135 ENSLACG00000011139 fam113 (ENSLACG00000010700) ENSLACG00000010360 ENSLACG00000008491 DCTN1 (ENSLACG00000007392) ENSLACG00000006539 ENSLACG00000003919 ##22 Coelacanth MODERN SPECIES 2742 ENSLACG00000005494 ##22 Actinopterygii ANCESTRAL SPECIES 7 ENSGT00940000164278 ENSGT00570000079216 ENSGT00990000208599 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00390000014797 Reedfish MODERN SPECIES 10 ENSECRG00000010300 ADGRA1 (ENSECRG00000010289) gabrz (ENSECRG00000010274) ENSECRG00000010263 ENSECRG00000010254 valopb (ENSECRG00000010242) nkx6.2 (ENSECRG00000010230) INPP5A (ENSECRG00000010209) PWWP2B (ENSECRG00000010194) STK32C (ENSECRG00000010168) dpysl4 (ENSECRG00000010136) ##16 JAKMIP3 (ENSECRG00000010115) bnip3 (ENSECRG00000010103) ##19 ppp2r2d (ENSECRG00000009895) ##21 glrx3 (ENSECRG00000009843) ebf3a (ENSECRG00000009768) ##22 MGMT (ENSECRG00000009749) ENSECRG00000009728 PTPRE (ENSECRG00000009682) CLRN3 (ENSECRG00000009659) foxi1 (ENSECRG00000009638) ENSECRG00000009622 INSYN2A (ENSECRG00000009609) ENSECRG00000009591 ENSECRG00000009577 FANK1 (ENSECRG00000009536) dhx32a (ENSECRG00000009499) bccip (ENSECRG00000009476) mmp21 (ENSECRG00000009446) EDRF1 (ENSECRG00000009413) ENSECRG00000009399 Neopterygii ANCESTRAL SPECIES 10 ENSGT00940000164278 ENSGT00570000079216 ENSGT00990000208599 ENSGT01030000234549.a.b ENSGT00940000161547 ENSGT00390000015226.d ENSGT00940000160735 ENSGT00390000007203 ENSGT00940000160573 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.E ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000154352.A #23 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000161176 ENSGT00530000063787.B ENSGT00940000154974 ENSGT00940000153123.C ENSGT00940000155495.C ENSGT00940000160878 ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d Spotted gar MODERN SPECIES 671 gabrz (ENSLOCG00000007338) CFAP46 (ENSLOCG00000007359) ENSLOCG00000007373 valopb (ENSLOCG00000007383) nkx6.2 (ENSLOCG00000007395) INPP5A (ENSLOCG00000007409) PWWP2B (ENSLOCG00000007432) LRRC27 (ENSLOCG00000007441) STK32C (ENSLOCG00000007451) dpysl4 (ENSLOCG00000007471) ##16 JAKMIP3 (ENSLOCG00000007499) bnip3 (ENSLOCG00000007528) ##19 ppp2r2d (ENSLOCG00000007541) ##21 TCERG1L (ENSLOCG00000007558) glrx3 (ENSLOCG00000007580) ebf3a (ENSLOCG00000007615) ##22 MGMT (ENSLOCG00000007632) ENSLOCG00000007643 #23 PTPRE (ENSLOCG00000007653) ENSLOCG00000007677 foxi1 (ENSLOCG00000007685) dock1 (ENSLOCG00000007697) INSYN2A (ENSLOCG00000007774) ENSLOCG00000007788 ADAM12 (ENSLOCG00000007799) FANK1 (ENSLOCG00000007819) dhx32a (ENSLOCG00000007851) bccip (ENSLOCG00000007872) uros (ENSLOCG00000007886) mmp21 (ENSLOCG00000007899) EDRF1 (ENSLOCG00000007911) Osteoglossocephalai ANCESTRAL SPECIES 282 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000171352 ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 Osteoglossiformes DUPLICATION Osteoglossiformes ANCESTRAL SPECIES 74 ENSGT00940000155809.o ENSGT00940000153352.B ENSGT00940000159529 ENSGT00580000081628 ENSGT01030000234642.a.a ENSGT00390000015948.b ENSGT00390000009265 ENSGT00940000156270 ENSGT00940000161451 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b.x ##22 ENSGT00940000154352.A #23 ENSGT00940000156570.a.e ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00530000063787.B.b ENSGT00940000154974 ENSGT00940000155495.C.a.b.b ENSGT00940000160878.f ENSGT00940000157227 ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00940000154430.a.b ENSGT00940000158045.a ENSGT00530000063474.A P. kingsleyae MODERN SPECIES 18 smndc1 (ENSPKIG00000017164) dusp5 (ENSPKIG00000017184) smc3 (ENSPKIG00000017212) RBM20 (ENSPKIG00000017337) pdcd4b (ENSPKIG00000017462) bbip1 (ENSPKIG00000017516) shoc2 (ENSPKIG00000017545) adra2a (ENSPKIG00000017569) dpysl4 (ENSPKIG00000017592) ##16 ENSPKIG00000017654 bnip3 (ENSPKIG00000017750) ##19 ppp2r2d (ENSPKIG00000017779) ##21 TCERG1L (ENSPKIG00000017805) ENSPKIG00000017837 glrx3 (ENSPKIG00000017860) ebf3a (ENSPKIG00000017902) ##22 ENSPKIG00000017988 #23 PTPRE (ENSPKIG00000018044) Asian bonytongue MODERN SPECIES 16 mxi1 (ENSSFOG00015008321) smndc1 (ENSSFOG00015008311) dusp5 (ENSSFOG00015008304) smc3 (ENSSFOG00015008191) RBM20 (ENSSFOG00015008165) pdcd4b (ENSSFOG00015008116) bbip1 (ENSSFOG00015008155) shoc2 (ENSSFOG00015008045) adra2a (ENSSFOG00015008015) dpysl4 (ENSSFOG00015007947) ##16 ENSSFOG00015007861 bnip3 (ENSSFOG00015025818) ##19 ppp2r2d (ENSSFOG00015007785) ##21 TCERG1L (ENSSFOG00015007686) glrx3 (ENSSFOG00015007628) ebf3a (ENSSFOG00015007548) ##22 ENSSFOG00015007502 #23 PTPRE (ENSSFOG00015008160) CLRN3 (ENSSFOG00015008187) foxi1 (ENSSFOG00015033197) dock1 (ENSSFOG00015008303) INSYN2A (ENSSFOG00015008519) ADAM12 (ENSSFOG00015008550) dhx32a (ENSSFOG00015008596) bccip (ENSSFOG00015028323) uros (ENSSFOG00015008698) mmp21 (ENSSFOG00015008730) CTBP2 (ENSSFOG00015031457) ZRANB1 (ENSSFOG00015008836) hpdl (ENSSFOG00015024455) abraxas2 (ENSSFOG00015008897) Osteoglossiformes ANCESTRAL SPECIES 10 ENSGT00950000182859.A.b.y ##22 ENSGT00390000015799 ENSGT00940000182570 ENSGT00530000063787.B.a ENSGT00940000153123.C ENSGT00940000155495.C.a.b.a ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000154430.b ENSGT00940000158045.b ENSGT00530000063424.a.r ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 ENSGT00390000004719.a ENSGT00940000156414.q Asian bonytongue MODERN SPECIES 19 bag3 (ENSSFOG00015011401) inpp5f (ENSSFOG00015011281) mcmbp (ENSSFOG00015011221) sec23ip (ENSSFOG00015011160) csgalnact2 (ENSSFOG00015011121) ret (ENSSFOG00015011082) ENSSFOG00015011060 si:dkey-192p21.6 (ENSSFOG00015011031) pcbd1 (ENSSFOG00015011002) sgpl1 (ENSSFOG00015010952) neurog3 (ENSSFOG00015010925) pdlim1 (ENSSFOG00015010881) SORBS1 (ENSSFOG00015029914) ENSSFOG00015010624 ALDH18A1 (ENSSFOG00015010509) EBF3 (ENSSFOG00015010434) ##22 MGMT (ENSSFOG00015010411) ENSSFOG00015010385 PTPRE (ENSSFOG00015010297) INSYN2A (ENSSFOG00015010265) ENSSFOG00015010239 ADAM12 (ENSSFOG00015010203) ENSSFOG00015010224 FANK1 (ENSSFOG00015010178) EDRF1 (ENSSFOG00015010132) tex36 (ENSSFOG00015010088) ctbp2a (ENSSFOG00015010041) ZRANB1 (ENSSFOG00015009991) ABRAXAS2 (ENSSFOG00015009945) eef1akmt2 (ENSSFOG00015009906) nkx1.2la (ENSSFOG00015009852) Clupeocephala ANCESTRAL SPECIES 120 ENSGT01030000234635.a.a.a.b ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00940000156570.b ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 ENSGT00390000004719.a ENSGT00950000183001.a.a.d.b ENSGT00940000160392 ENSGT00940000158286.e.a ENSGT00940000155035.n.a Otomorpha ANCESTRAL SPECIES 37 ENSGT01030000234635.a.a.a.b ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.d ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000161176 ENSGT00530000063787.B.d.a ENSGT00940000154974 ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00940000166669.b ENSGT00940000168551 ENSGT00940000154430.d Clupeiformes ANCESTRAL SPECIES 141 ENSGT00940000164148.a.b ENSGT00390000004566 ENSGT00940000154944 ENSGT00390000006695 ENSGT00940000154959 ENSGT01030000234586.A.a.a.a ENSGT01030000234635.a.a.a.b ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.d ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974 ENSGT00530000063787.B.d.a ENSGT00940000153123.C ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00940000154430.c.a ENSGT00940000171352 ENSGT00940000169101 Denticle herring MODERN SPECIES 11 ENSDCDG00000016089 dcun1d3 (ENSDCDG00000016101) lyrm1 (ENSDCDG00000016104) ENSDCDG00000016106 SYDE1 (ENSDCDG00000016110) CYP4F8 (ENSDCDG00000016203) ENSDCDG00000019307 dpysl4 (ENSDCDG00000019336) ##16 ENSDCDG00000020971 bnip3 (ENSDCDG00000021012) ##19 ppp2r2d (ENSDCDG00000021031) ##21 ENSDCDG00000021979 TCERG1L (ENSDCDG00000021980) ENSDCDG00000021984 glrx3 (ENSDCDG00000021987) ebf3a (ENSDCDG00000022048) ##22 ENSDCDG00000022154 PTPRE (ENSDCDG00000022163) slka (ENSDCDG00000023363) DNAH7 (ENSDCDG00000023756) ENSDCDG00000024276 ENSDCDG00000024279 foxi1 (ENSDCDG00000024281) dock1 (ENSDCDG00000024629) INSYN2A (ENSDCDG00000031457) ADAM12 (ENSDCDG00000031471) CTBP2 (ENSDCDG00000031692) mmp21 (ENSDCDG00000031771) uros (ENSDCDG00000031773) bccip (ENSDCDG00000031778) dhx32a (ENSDCDG00000031780) Atlantic herring MODERN SPECIES 15 lyrm1 (ENSCHAG00000009470) ENSCHAG00000009523 ENSCHAG00000009570 ENSCHAG00000009600 ENSCHAG00000009640 SYDE1 (ENSCHAG00000009642) SYDE1 (ENSCHAG00000009650) cyp4f3 (ENSCHAG00000009659) ENSCHAG00000010275 dpysl4 (ENSCHAG00000010372) ##16 ENSCHAG00000013863 bnip3 (ENSCHAG00000013935) ##19 ppp2r2d (ENSCHAG00000013972) ##21 TCERG1L (ENSCHAG00000014167) glrx3 (ENSCHAG00000014174) ebf3a (ENSCHAG00000014216) ##22 ENSCHAG00000015542 PTPRE (ENSCHAG00000015648) CLRN3 (ENSCHAG00000018229) foxi1 (ENSCHAG00000018241) dock1 (ENSCHAG00000018532) INSYN2A (ENSCHAG00000025102) ENSCHAG00000025106 ADAM12 (ENSCHAG00000025127) ENSCHAG00000025531 FANK1 (ENSCHAG00000025534) dhx32a (ENSCHAG00000025539) bccip (ENSCHAG00000025570) uros (ENSCHAG00000025572) mmp21 (ENSCHAG00000025584) ENSCHAG00000025624 Otophysi ANCESTRAL SPECIES 117 ENSGT00410000026495.C.a ENSGT00630000089884.D ENSGT00390000001758 ENSGT00940000164863 ENSGT00940000154244.A.a.b ENSGT00940000153560.b.a.a.n.b ENSGT00720000108863.l.a ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.d ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00940000180141 ENSGT00950000182859.A.b ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000161176 ENSGT00530000063787.B.d.a ENSGT00940000154974 ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 ENSGT00940000155061.a.b.k.b Characiphysae ANCESTRAL SPECIES 111 ENSGT00410000026495.C.a ENSGT00630000089884.D ENSGT00390000001758 ENSGT00940000164863 ENSGT00940000154244.A.a.b ENSGT00940000153560.b.a.a.n.b ENSGT00720000108863.l.a ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.d ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00940000180141 ENSGT00950000182859.A.b ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00530000063787.B.d.a ENSGT00940000154974 ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 ENSGT00940000155061.a.b.k.b ENSGT00940000160250 Channel catfish MODERN SPECIES 4 ENSIPUG00000007069 ENSIPUG00000006987 cep131 (ENSIPUG00000006931) ENSIPUG00000006912 AATK (ENSIPUG00000006865) BAIAP2 (ENSIPUG00000006744) chmp6 (ENSIPUG00000006694) ENSIPUG00000006684 DPYSL2 (ENSIPUG00000006603) ##16 ENSIPUG00000006468 bnip3 (ENSIPUG00000006409) ##19 ppp2r2d (ENSIPUG00000006375) ##21 tcerg1l (ENSIPUG00000006351) glrx3 (ENSIPUG00000006303) ENSIPUG00000006260 ebf3 (ENSIPUG00000006166) ##22 ptpre (ENSIPUG00000006005) clrn3 (ENSIPUG00000005980) foxi2 (ENSIPUG00000005959) INSYN2A (ENSIPUG00000005942) dock1 (ENSIPUG00000005848) ADAM12 (ENSIPUG00000005828) dhx32a (ENSIPUG00000005787) bccip (ENSIPUG00000005723) wbp2 (ENSIPUG00000005706) Trim65 (ENSIPUG00000005681) mrpl38 (ENSIPUG00000005585) FDXR (ENSIPUG00000005522) psd (ENSIPUG00000005488) fbxl15 (ENSIPUG00000005473) gpx9 (ENSIPUG00000005464) Characiphysae_b ANCESTRAL SPECIES 124 ENSGT00410000026495.C.a ENSGT00630000089884.D ENSGT00390000001758 ENSGT00940000164863 ENSGT00940000154244.A.a.b ENSGT00940000153560.b.a.a.n.b ENSGT00720000108863.l.a ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.d ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00940000180141 ENSGT00950000182859.A.b ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00530000063787.B.d.a ENSGT00940000154974 ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 Characoidei ANCESTRAL SPECIES 120 ENSGT00940000154768.A.a.g.b.i ENSGT00950000182696.B.a.b ENSGT00950000182894.A.b.b ENSGT00940000161131.a.b.k.a ENSGT00940000154244.A.a.b ENSGT00940000153560.b.a.a.n.b ENSGT00720000108863.l.a ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.d ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00940000180141 ENSGT00950000182859.A.b ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000161176 ENSGT00530000063787.B.d.a ENSGT00940000154974 ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 Red-bellied piranha MODERN SPECIES 3 pmp22b (ENSPNAG00000002151) TEKT3 (ENSPNAG00000012217) ENSPNAG00000012228 ENSPNAG00000002172 AATK (ENSPNAG00000012287) BAIAP2 (ENSPNAG00000012325) chmp6b (ENSPNAG00000012354) ENSPNAG00000002225 dpysl4 (ENSPNAG00000002252) ##16 ENSPNAG00000012570 bnip3 (ENSPNAG00000002311) ##19 ppp2r2d (ENSPNAG00000012663) ##21 TCERG1L (ENSPNAG00000012681) glrx3 (ENSPNAG00000012728) ENSPNAG00000002378 ebf3a (ENSPNAG00000007201) ##22 PTPRE (ENSPNAG00000012929) CLRN3 (ENSPNAG00000012944) FOXI2 (ENSPNAG00000002484) INSYN2A (ENSPNAG00000012961) dock1 (ENSPNAG00000013246) ADAM12 (ENSPNAG00000013279) FANK1 (ENSPNAG00000002726) dhx32a (ENSPNAG00000013426) bccip (ENSPNAG00000002746) wbp2 (ENSPNAG00000013460) ENSPNAG00000013469 mrpl38 (ENSPNAG00000002767) FDXR (ENSPNAG00000013514) Mexicana tetra MODERN SPECIES 19 MC4R (ENSAMXG00000041719) pmp22b (ENSAMXG00000033166) TEKT3 (ENSAMXG00000041680) ENSAMXG00000021396 AATK (ENSAMXG00000021400) BAIAP2 (ENSAMXG00000043636) chmp6b (ENSAMXG00000043333) ENSAMXG00000030119 dpysl4 (ENSAMXG00000039405) ##16 ENSAMXG00000040283 ppp2r2d (ENSAMXG00000006685) ##21 bnip3 (ENSAMXG00000006670) ##19 TCERG1L (ENSAMXG00000037905) ENSAMXG00000039153 glrx3 (ENSAMXG00000006630) ebf3a (ENSAMXG00000006585) ##22 PTPRE (ENSAMXG00000006539) ENSAMXG00000032365 CLRN3 (ENSAMXG00000043209) foxi1 (ENSAMXG00000036115) INSYN2A (ENSAMXG00000025885) dock1 (ENSAMXG00000041039) wbp2 (ENSAMXG00000015647) ENSAMXG00000015602 mrpl38 (ENSAMXG00000015580) ENSAMXG00000015538 CDC42EP4 (ENSAMXG00000024838) SDK2 (ENSAMXG00000041682) RPL38 (ENSAMXG00000017793) ttyh2 (ENSAMXG00000034952) TTYH2 (ENSAMXG00000030773) Electric eel MODERN SPECIES 199 ENSEEEG00000005107 chmp6b (ENSEEEG00000005106) ENSEEEG00000005102 dpysl4 (ENSEEEG00000005096) ##16 ENSEEEG00000005091 bnip3 (ENSEEEG00000005089) ##19 ppp2r2d (ENSEEEG00000004813) ##21 TCERG1L (ENSEEEG00000004800) glrx3 (ENSEEEG00000004783) ebf3a (ENSEEEG00000004769) ##22 Cyprinoidei ANCESTRAL SPECIES 18 ENSGT00940000154187.a.b.a ENSGT00940000157512.j.c ENSGT00940000157041.b ENSGT00940000155003.e.a ENSGT00940000154801.m.a ENSGT01030000234815 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00990000210016 ENSGT00390000013415.a.a.d ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00940000180141 ENSGT00950000182859.A.b ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974 ENSGT00530000063787.B.d.a ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00530000063718.a.a ENSGT00940000162951 ENSGT00900000141125 ENSGT00390000013574 ENSGT00920000150782 ENSGT00940000155061.a.b.k.b Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 657 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b.h ##16 ENSGT00940000153713.A.k ENSGT00390000013415.a.a.d.a ##19 ENSGT00950000182864.a.a.r ##21 ENSGT00940000160593.c.a ENSGT00990000210016 ENSGT00550000075030.h ENSGT00950000182859.A.b.z ##22 ENSGT00940000156570.a.b ENSGT00850000132319.b.l ENSGT00940000164576.a.a ENSGT01060000248786.a.b ENSGT00940000164679.eb.c.b.d.b Goldfish MODERN SPECIES 2311 ENSCARG00000063080 EPC1 (ENSCARG00000063100) KIF5B (ENSCARG00000063305) ENSCARG00000063888 dpysl4 (ENSCARG00000064179) ##16 ENSCARG00000067478 ppp2r2d (ENSCARG00000067532) ##21 bnip3 (ENSCARG00000067583) ##19 TCERG1L (ENSCARG00000067598) ENSCARG00000067615 glrx3 (ENSCARG00000067632) ebf3a (ENSCARG00000067757) ##22 Cyprininae_a ANCESTRAL SPECIES 486 ENSGT01000000215368 ENSGT00940000154187.a.a.jb.a.b ENSGT00940000154187.a.b.a.c ENSGT00940000157512.j.c.a ENSGT00940000157041.b.a ENSGT00940000155003.e.a.g.b ENSGT00940000154801.m.a.c ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b.h ##16 ENSGT00940000153713.A.k ENSGT00390000013415.a.a.d.a ##19 ENSGT00950000182864.a.a.r ##21 ENSGT00940000160593.c.a ENSGT00990000210016 ENSGT00550000075030.h ENSGT00950000182859.A.b.z ##22 Golden-line barbel MODERN SPECIES 40 ENSSGRG00000018293 ENSSGRG00000018292 CDH12 (ENSSGRG00000018062) ENSSGRG00000018053 CDH18 (ENSSGRG00000018050) ENSSGRG00000018049 ENSSGRG00000018025 KIF5B (ENSSGRG00000017762) ENSSGRG00000017756 dpysl4 (ENSSGRG00000017164) ##16 ENSSGRG00000017149 bnip3 (ENSSGRG00000017144) ##19 ppp2r2d (ENSSGRG00000017053) ##21 ENSSGRG00000017049 glrx3 (ENSSGRG00000016937) ebf3a (ENSSGRG00000016642) ##22 PTPRE (ENSSGRG00000013660) CLRN3 (ENSSGRG00000013628) ENSSGRG00000013626 ENSSGRG00000013624 ENSSGRG00000013622 ENSSGRG00000013620 INSYN2A (ENSSGRG00000013619) dock1 (ENSSGRG00000010417) Cyprininae ANCESTRAL SPECIES 393 ENSGT00940000163996.c ENSGT00940000160989.d ENSGT00940000158172.g ENSGT00940000154187.a.a.jb.a.a ENSGT00940000154187.a.b.a.d ENSGT00940000157512.j.c.b ENSGT00940000155003.e.a.g.a ENSGT00940000154801.m.a.d ENSGT01030000234815 ENSGT01030000234527.A.a.b.a.b.g ##16 ENSGT00940000153713.A.l ENSGT00390000013415.a.a.d.b ##19 ENSGT00950000182864.a.a.q ##21 ENSGT00940000160593.d ENSGT00550000075030.g ENSGT00950000182859.A.b.`b ##22 ENSGT00940000156570.a.a ENSGT00850000132319.b.k ENSGT00940000164576.a.b ENSGT00530000063787.B.d.a.f ENSGT00940000154974.m.b ENSGT00940000155495.C.a.a.h ENSGT00940000160878.f ENSGT00940000157227.g.n ENSGT00390000000696.rb ENSGT00530000063718.a.a.m.b ENSGT00940000162951.j ENSGT00900000141125.a.b Cyprininae_a ANCESTRAL SPECIES 339 ENSGT00940000160989.d ENSGT00940000158172.g ENSGT00940000154187.a.a.jb.a.a ENSGT00940000154187.a.b.a.d ENSGT00940000157512.j.c.b ENSGT00940000157041.b.b ENSGT00940000155003.e.a.g.a ENSGT00940000154801.m.a.d ENSGT01070000254828.a ENSGT01030000234527.A.a.b.a.b.g ##16 ENSGT00940000153713.A.l ENSGT00390000013415.a.a.d.b ##19 ENSGT00950000182864.a.a.q ##21 ENSGT00940000160593.d ENSGT00550000075030.g ENSGT00950000182859.A.b.`b ##22 ENSGT00940000156570.a.a ENSGT00850000132319.b.k ENSGT00940000164576.a.b ENSGT00530000063787.B.d.a.f ENSGT00940000154974.m.b ENSGT00940000155495.C.a.a.h ENSGT00940000160878.f ENSGT00940000157227.g.n ENSGT00390000000696.rb ENSGT00530000063718.a.a.m.b ENSGT00940000162951.j ENSGT00900000141125.a.b Golden-line barbel MODERN SPECIES 476 bnip3 (ENSSGRG00000048350) ##19 ppp2r2d (ENSSGRG00000048360) ##21 TCERG1L (ENSSGRG00000049242) glrx3 (ENSSGRG00000049245) ebf3a (ENSSGRG00000049251) ##22 PTPRE (ENSSGRG00000049527) Goldfish MODERN SPECIES 1261 ebf3a (ENSCARG00000031254) ##22 Zebrafish DUPLICATION Zebrafish MODERN SPECIES 918 ENSDARG00000113012 ##22 Zebrafish MODERN SPECIES 3 ENSDARG00000097826 ENSDARG00000096816 ENSDARG00000103903 CDH18 (ENSDARG00000102769) ENSDARG00000099898 EPC1 (ENSDARG00000101579) KIF5B (ENSDARG00000103394) dpysl4 (ENSDARG00000103490) ##16 ENSDARG00000100708 bnip3 (ENSDARG00000099961) ##19 ppp2r2d (ENSDARG00000102009) ##21 TCERG1L (ENSDARG00000109963) ENSDARG00000099060 glrx3 (ENSDARG00000098785) ENSDARG00000103294 ebf3a (ENSDARG00000100244) ##22 PTPRE (ENSDARG00000015891) CLRN3 (ENSDARG00000100465) foxi1 (ENSDARG00000104566) zgc:112964 (ENSDARG00000101200) ENSDARG00000101930 ENSDARG00000103634 ENSDARG00000098256 ENSDARG00000113076 ENSDARG00000100106 ENSDARG00000098736 ENSDARG00000102895 ENSDARG00000104324 ENSDARG00000116430 ENSDARG00000103650 ENSDARG00000104642 Euteleosteomorpha ANCESTRAL SPECIES 84 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000160878.e ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Acanthomorphata ANCESTRAL SPECIES 24 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000160878.e ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Cod MODERN SPECIES 6 ENSGMOG00000012677 ##28 ENSGMOG00000016016 ENSGMOG00000016203 ENSGMOG00000016222 sfr1 (ENSGMOG00000016280) ENSGMOG00000016289 slka (ENSGMOG00000016391) SH3PXD2A (ENSGMOG00000026660) ENSGMOG00000016447 ENSGMOG00000016469 ENSGMOG00000016509 ENSGMOG00000016547 smndc1 (ENSGMOG00000016585) ENSGMOG00000016595 ##19 ENSGMOG00000016614 ##21 ENSGMOG00000016636 ##22 ENSGMOG00000016672 GnRH3 (ENSGMOG00000016680) ENSGMOG00000016693 INSYN2A (ENSGMOG00000032885) ENSGMOG00000009032 ENSGMOG00000033058 ADAM12 (ENSGMOG00000002539) ENSGMOG00000019873 ENSGMOG00000037183 DHX32 (ENSGMOG00000029453) EDRF1 (ENSGMOG00000004831) ENSGMOG00000036040 zgc:153169 (ENSGMOG00000036949) ENSGMOG00000004888 cep68 (ENSGMOG00000032092) Euacanthomorphacea ANCESTRAL SPECIES 6 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000160878.e ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Pinecone sodierfish MODERN SPECIES 6 ENSMMDG00005011032 sfr1 (ENSMMDG00005011030) ENSMMDG00005011027 slka (ENSMMDG00005010491) SH3PXD2A (ENSMMDG00005010474) ENSMMDG00005010462 ENSMMDG00005010447 ENSMMDG00005010424 add3b (ENSMMDG00005010423) ENSMMDG00005010417 ENSMMDG00005010415 smndc1 (ENSMMDG00005010414) ADRA2A (ENSMMDG00005010413) bnip3 (ENSMMDG00005010409) ##19 ppp2r2d (ENSMMDG00005010034) ##21 ebf3a (ENSMMDG00005010024) ##22 mgmt (ENSMMDG00005010022) ENSMMDG00005010020 ptpreb (ENSMMDG00005010002) INSYN2A (ENSMMDG00005009980) ENSMMDG00005009626 ENSMMDG00005009609 ADAM12 (ENSMMDG00005009602) FANK1 (ENSMMDG00005009593) DHX32 (ENSMMDG00005009573) EDRF1 (ENSMMDG00005007034) ctbp2a (ENSMMDG00005006978) zranb1b (ENSMMDG00005006962) abraxas2 (ENSMMDG00005006953) eef1akmt2 (ENSMMDG00005006948) FAM53B (ENSMMDG00005006946) Percomorphaceae ANCESTRAL SPECIES 5 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Tiger tail seahorse MODERN SPECIES 512 rpl8 (ENSHCOG00000014263) coq10b (ENSHCOG00000000735) hspd1 (ENSHCOG00000014298) hspe1 (ENSHCOG00000014327) mob4 (ENSHCOG00000014349) rftn2 (ENSHCOG00000014372) ENSHCOG00000000600 ENSHCOG00000015346 ENSHCOG00000015365 add3b (ENSHCOG00000015759) ENSHCOG00000015794 smndc1 (ENSHCOG00000000783) ADRA2A (ENSHCOG00000015819) bnip3 (ENSHCOG00000015833) ##19 ppp2r2d (ENSHCOG00000015851) ##21 ebf3a (ENSHCOG00000015863) ##22 MGMT (ENSHCOG00000015878) ENSHCOG00000015887 ptpreb (ENSHCOG00000016250) INSYN2A (ENSHCOG00000016298) ENSHCOG00000016342 EDRF1 (ENSHCOG00000016375) ENSHCOG00000016390 ENSHCOG00000016434 ZRANB1 (ENSHCOG00000016466) abraxas2 (ENSHCOG00000016490) eef1akmt2 (ENSHCOG00000016501) FAM53B (ENSHCOG00000016518) nkx1.2la (ENSHCOG00000016527) CHST15 (ENSHCOG00000016549) GPR26 (ENSHCOG00000016561) Percomorphaceae_B ANCESTRAL SPECIES 4 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Ovalentaria ANCESTRAL SPECIES 18 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Ovalentaria_B ANCESTRAL SPECIES 7 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a Pomacentridae ANCESTRAL SPECIES 9 ENSGT00940000155351 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Pomacentridae_A ANCESTRAL SPECIES 7 ENSGT00530000064714 ENSGT00940000155351 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 Amphiprion ANCESTRAL SPECIES 13 ENSGT00940000155351.l ENSGT00940000155351.k.a ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 Clown anemonefish MODERN SPECIES 695 ELFN2 (ENSAOCG00000018193) sgsm3 (ENSAOCG00000001290) gtpbp1 (ENSAOCG00000018070) lgals2a (ENSAOCG00000017993) ENSAOCG00000001270 luc7l3 (ENSAOCG00000017960) add3b (ENSAOCG00000001263) ENSAOCG00000017882 smndc1 (ENSAOCG00000017869) ENSAOCG00000017860 bnip3 (ENSAOCG00000017849) ##19 ppp2r2d (ENSAOCG00000017824) ##21 mgmt (ENSAOCG00000017793) ebf3a (ENSAOCG00000017783) ##22 ENSAOCG00000017717 ptpreb (ENSAOCG00000017333) INSYN2A (ENSAOCG00000017270) ENSAOCG00000017244 ENSAOCG00000017143 ADAM12 (ENSAOCG00000001941) Orange clownfish MODERN SPECIES 12 GSTO1 (ENSAPEG00000009066) GSTO1 (ENSAPEG00000009047) ENSAPEG00000009035 sfr1 (ENSAPEG00000009026) slka (ENSAPEG00000008890) SH3PXD2A (ENSAPEG00000008815) ENSAPEG00000008779 ENSAPEG00000008387 ENSAPEG00000007890 add3b (ENSAPEG00000007803) ENSAPEG00000007785 smndc1 (ENSAPEG00000007752) ADRA2A (ENSAPEG00000007744) bnip3 (ENSAPEG00000007717) ##19 ppp2r2d (ENSAPEG00000007679) ##21 ebf3a (ENSAPEG00000007624) ##22 mgmt (ENSAPEG00000007606) gnrh3 (ENSAPEG00000007592) ptpreb (ENSAPEG00000007529) INSYN2A (ENSAPEG00000007509) ENSAPEG00000007489 ENSAPEG00000007480 ADAM12 (ENSAPEG00000007403) DHX32 (ENSAPEG00000007387) EDRF1 (ENSAPEG00000007285) ENSAPEG00000007210 zranb1b (ENSAPEG00000007138) abraxas2 (ENSAPEG00000007096) eef1akmt2 (ENSAPEG00000007081) FAM53B (ENSAPEG00000007071) nkx1.2la (ENSAPEG00000007027) Spiny chromis MODERN SPECIES 303 ENSAPOG00000021671 add3b (ENSAPOG00000021725) ENSAPOG00000021741 smndc1 (ENSAPOG00000021772) ADRA2A (ENSAPOG00000021784) bnip3 (ENSAPOG00000021815) ##19 ppp2r2d (ENSAPOG00000021861) ##21 ebf3a (ENSAPOG00000021929) ##22 mgmt (ENSAPOG00000021961) gnrh3 (ENSAPOG00000022399) ptpreb (ENSAPOG00000022507) INSYN2A (ENSAPOG00000022520) ENSAPOG00000022709 ENSAPOG00000022735 ADAM12 (ENSAPOG00000022758) Bicolor damselfish MODERN SPECIES 503 add3b (ENSSPAG00000000259) MXI1 (ENSSPAG00000000324) smndc1 (ENSSPAG00000000338) ADRA2A (ENSSPAG00000000369) bnip3 (ENSSPAG00000000375) ##19 ppp2r2d (ENSSPAG00000000393) ##21 ebf3a (ENSSPAG00000000434) ##22 mgmt (ENSSPAG00000000502) gnrh3 (ENSSPAG00000000512) ptpreb (ENSSPAG00000000536) INSYN2A (ENSSPAG00000000634) ENSSPAG00000000644 ENSSPAG00000000659 ADAM12 (ENSSPAG00000000680) DHX32 (ENSSPAG00000000764) EDRF1 (ENSSPAG00000000864) si:ch1073-143l10.2 (ENSSPAG00000000987) tex36 (ENSSPAG00000001011) ENSSPAG00000001026 Cichlidae ANCESTRAL SPECIES 13 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a Pseudocrenilabrinae ANCESTRAL SPECIES 16 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Pseudocrenilabrinae_A ANCESTRAL SPECIES 11 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Lyretail cichlid MODERN SPECIES 295 ENSNBRG00000017647 sfr1 (ENSNBRG00000017636) ENSNBRG00000017621 slka (ENSNBRG00000017589) ENSNBRG00000017573 SH3PXD2A (ENSNBRG00000017528) ENSNBRG00000017508 ENSNBRG00000017282 ENSNBRG00000017200 add3b (ENSNBRG00000017141) ENSNBRG00000017109 smndc1 (ENSNBRG00000017089) ADRA2A (ENSNBRG00000017081) bnip3 (ENSNBRG00000017061) ##19 ppp2r2d (ENSNBRG00000017033) ##21 ebf3a (ENSNBRG00000016990) ##22 MGMT (ENSNBRG00000016969) ENSNBRG00000016708 ptpreb (ENSNBRG00000016627) INSYN2A (ENSNBRG00000016598) ENSNBRG00000016561 ADAM12 (ENSNBRG00000016478) DHX32 (ENSNBRG00000016396) EDRF1 (ENSNBRG00000016329) si:ch1073-143l10.2 (ENSNBRG00000016302) tex36 (ENSNBRG00000016287) ENSNBRG00000016260 ZRANB1 (ENSNBRG00000016218) abraxas2 (ENSNBRG00000016174) eef1akmt2 (ENSNBRG00000016151) FAM53B (ENSNBRG00000016144) Haplochromini ANCESTRAL SPECIES 10 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Burton s mouthbrooder MODERN SPECIES 275 ENSHBUG00000018136 sfr1 (ENSHBUG00000018022) ENSHBUG00000018003 slka (ENSHBUG00000000531) SH3PXD2A (ENSHBUG00000017861) ENSHBUG00000017830 ENSHBUG00000017812 ENSHBUG00000017750 ENSHBUG00000017730 add3b (ENSHBUG00000017711) MXI1 (ENSHBUG00000000525) smndc1 (ENSHBUG00000017596) ADRA2A (ENSHBUG00000017578) bnip3 (ENSHBUG00000017572) ##19 ppp2r2d (ENSHBUG00000017557) ##21 ebf3a (ENSHBUG00000017528) ##22 MGMT (ENSHBUG00000017490) PreproGnRH (ENSHBUG00000017482) ptpreb (ENSHBUG00000017449) INSYN2A (ENSHBUG00000017370) ENSHBUG00000017353 ADAM12 (ENSHBUG00000017329) DHX32 (ENSHBUG00000017313) EDRF1 (ENSHBUG00000017302) si:ch1073-143l10.2 (ENSHBUG00000017191) tex36 (ENSHBUG00000017186) ENSHBUG00000017157 ZRANB1 (ENSHBUG00000017048) abraxas2 (ENSHBUG00000017003) eef1akmt2 (ENSHBUG00000016969) FAM53B (ENSHBUG00000016941) Haplochromini_A ANCESTRAL SPECIES 8 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Haplochromini_B ANCESTRAL SPECIES 5 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00730000113701 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Zebra mbuna MODERN SPECIES 1095 sfr1 (ENSMZEG00005027558) ENSMZEG00005027556 slka (ENSMZEG00005027550) ENSMZEG00005027549 SH3PXD2A (ENSMZEG00005027544) ENSMZEG00005027543 ENSMZEG00005027529 ENSMZEG00005027521 add3b (ENSMZEG00005027515) ENSMZEG00005027512 smndc1 (ENSMZEG00005027510) ENSMZEG00005027508 ADRA2A (ENSMZEG00005027507) bnip3 (ENSMZEG00005027506) ##19 ppp2r2d (ENSMZEG00005027504) ##21 ebf3a (ENSMZEG00005027501) ##22 MGMT (ENSMZEG00005027499) gnrh3 (ENSMZEG00005027490) ptpreb (ENSMZEG00005027483) INSYN2A (ENSMZEG00005027481) ENSMZEG00005027479 ENSMZEG00005027478 ADAM12 (ENSMZEG00005027476) DHX32 (ENSMZEG00005027474) EDRF1 (ENSMZEG00005027468) si:ch1073-143l10.2 (ENSMZEG00005027466) tex36 (ENSMZEG00005027465) ENSMZEG00005027463 ZRANB1 (ENSMZEG00005027460) abraxas2 (ENSMZEG00005027456) eef1akmt2 (ENSMZEG00005027455) Eastern happy MODERN SPECIES 4 sfr1 (ENSACLG00000015625) ENSACLG00000015631 slka (ENSACLG00000015671) SH3PXD2A (ENSACLG00000015869) ENSACLG00000015963 ENSACLG00000015999 ENSACLG00000016051 ENSACLG00000016080 ENSACLG00000016194 add3b (ENSACLG00000016265) MXI1 (ENSACLG00000016347) smndc1 (ENSACLG00000016360) ADRA2A (ENSACLG00000016393) bnip3 (ENSACLG00000016400) ##19 ppp2r2d (ENSACLG00000016449) ##21 ebf3a (ENSACLG00000016534) ##22 MGMT (ENSACLG00000016655) ENSACLG00000016797 ptpreb (ENSACLG00000016674) INSYN2A (ENSACLG00000016808) EDRF1 (ENSACLG00000016840) ENSACLG00000017045 ADAM12 (ENSACLG00000017084) DHX32 (ENSACLG00000017177) si:ch1073-143l10.2 (ENSACLG00000017224) ENSACLG00000017241 tex36 (ENSACLG00000017245) ENSACLG00000017270 ZRANB1 (ENSACLG00000017385) abraxas2 (ENSACLG00000017454) eef1akmt2 (ENSACLG00000017498) P. nyererei MODERN SPECIES 319 ENSPNYG00000006230 ENSPNYG00000006205 sfr1 (ENSPNYG00000006190) ENSPNYG00000006159 slka (ENSPNYG00000006118) ENSPNYG00000006102 SH3PXD2A (ENSPNYG00000006072) ENSPNYG00000006018 ENSPNYG00000005443 ENSPNYG00000005026 add3b (ENSPNYG00000004921) ENSPNYG00000004821 ADRA2A (ENSPNYG00000004800) bnip3 (ENSPNYG00000004777) ##19 ppp2r2d (ENSPNYG00000004735) ##21 ebf3a (ENSPNYG00000004682) ##22 MGMT (ENSPNYG00000004664) gnrh3 (ENSPNYG00000004515) ptpreb (ENSPNYG00000004467) INSYN2A (ENSPNYG00000004446) ENSPNYG00000004398 ADAM12 (ENSPNYG00000004320) DHX32 (ENSPNYG00000004257) EDRF1 (ENSPNYG00000004153) si:ch1073-143l10.2 (ENSPNYG00000004120) tex36 (ENSPNYG00000004102) ENSPNYG00000004075 ZRANB1 (ENSPNYG00000004021) abraxas2 (ENSPNYG00000003987) eef1akmt2 (ENSPNYG00000003960) FAM53B (ENSPNYG00000003921) Nile tilapia MODERN SPECIES 4 sfr1 (ENSONIG00000000396) ENSONIG00000000397 slka (ENSONIG00000000402) ENSONIG00000029796 SH3PXD2A (ENSONIG00000000407) ENSONIG00000000409 ENSONIG00000000410 ENSONIG00000000419 add3b (ENSONIG00000000421) ENSONIG00000040263 smndc1 (ENSONIG00000000434) ENSONIG00000039182 ADRA2A (ENSONIG00000020723) bnip3 (ENSONIG00000000438) ##19 ppp2r2d (ENSONIG00000039942) ##21 ebf3a (ENSONIG00000000451) ##22 MGMT (ENSONIG00000000470) gnrh3 (ENSONIG00000041147) ptpreb (ENSONIG00000000471) INSYN2A (ENSONIG00000000485) ENSONIG00000000487 ENSONIG00000033335 ADAM12 (ENSONIG00000000492) DHX32 (ENSONIG00000000506) EDRF1 (ENSONIG00000000507) ENSONIG00000000510 ZRANB1 (ENSONIG00000000515) abraxas2 (ENSONIG00000027601) eef1akmt2 (ENSONIG00000000522) FAM53B (ENSONIG00000035072) nkx1.2la (ENSONIG00000000526) Midas cichlid MODERN SPECIES 230 ENSACIG00000003964 sfr1 (ENSACIG00000004117) ENSACIG00000004141 slka (ENSACIG00000004158) ENSACIG00000004209 SH3PXD2A (ENSACIG00000004224) ENSACIG00000004261 ENSACIG00000004313 ENSACIG00000004687 add3b (ENSACIG00000004743) MXI1 (ENSACIG00000004774) smndc1 (ENSACIG00000004819) ADRA2A (ENSACIG00000004832) bnip3 (ENSACIG00000004835) ##19 ppp2r2d (ENSACIG00000004849) ##21 ebf3a (ENSACIG00000004875) ##22 mgmt (ENSACIG00000004917) ENSACIG00000004931 ptpreb (ENSACIG00000005183) INSYN2A (ENSACIG00000005220) ENSACIG00000005235 ADAM12 (ENSACIG00000005251) DHX32 (ENSACIG00000005306) EDRF1 (ENSACIG00000005350) ctbp2a (ENSACIG00000005409) zranb1b (ENSACIG00000005436) abraxas2 (ENSACIG00000005458) eef1akmt2 (ENSACIG00000005482) FAM53B (ENSACIG00000005500) nkx1.2la (ENSACIG00000005515) CHST15 (ENSACIG00000005529) Atherinomorphae ANCESTRAL SPECIES 16 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Oryzias ANCESTRAL SPECIES 6 ENSGT00940000163896.e.c ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Oryzias_b ANCESTRAL SPECIES 7 ENSGT00940000163896.e.c ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 Javanese ricefish MODERN SPECIES 6 itprip (ENSOJAG00000018821) ENSOJAG00000018797 ENSOJAG00000018761 sfr1 (ENSOJAG00000018755) ENSOJAG00000018745 SH3PXD2A (ENSOJAG00000018557) ENSOJAG00000018546 ENSOJAG00000017531 ENSOJAG00000017156 add3b (ENSOJAG00000016371) MXI1 (ENSOJAG00000016289) smndc1 (ENSOJAG00000016276) ADRA2A (ENSOJAG00000016250) bnip3 (ENSOJAG00000016235) ##19 ppp2r2d (ENSOJAG00000015857) ##21 ebf3a (ENSOJAG00000015483) ##22 MGMT (ENSOJAG00000015424) ENSOJAG00000015389 ptpreb (ENSOJAG00000013576) INSYN2A (ENSOJAG00000013422) ENSOJAG00000013404 ENSOJAG00000013398 ADAM12 (ENSOJAG00000012298) ENSOJAG00000012173 DHX32 (ENSOJAG00000012119) EDRF1 (ENSOJAG00000010764) ENSOJAG00000010318 zranb1b (ENSOJAG00000010040) abraxas2 (ENSOJAG00000010009) eef1akmt2 (ENSOJAG00000009995) FAM53B (ENSOJAG00000009959) Indian medaka MODERN SPECIES 27 ENSOMEG00000006410 sfr1 (ENSOMEG00000006416) ENSOMEG00000006444 slka (ENSOMEG00000006498) ENSOMEG00000006511 SH3PXD2A (ENSOMEG00000006545) ENSOMEG00000000153 ENSOMEG00000007185 ENSOMEG00000007448 add3b (ENSOMEG00000007497) ENSOMEG00000007548 smndc1 (ENSOMEG00000007590) ADRA2A (ENSOMEG00000007601) bnip3 (ENSOMEG00000007623) ##19 ppp2r2d (ENSOMEG00000007643) ##21 ebf3a (ENSOMEG00000007721) ##22 MGMT (ENSOMEG00000007760) ENSOMEG00000008001 ptpreb (ENSOMEG00000008113) INSYN2A (ENSOMEG00000000199) ENSOMEG00000008173 ENSOMEG00000008203 ADAM12 (ENSOMEG00000008244) DHX32 (ENSOMEG00000008273) EDRF1 (ENSOMEG00000008343) ENSOMEG00000008468 zranb1b (ENSOMEG00000000652) abraxas2 (ENSOMEG00000008608) eef1akmt2 (ENSOMEG00000008648) FAM53B (ENSOMEG00000008668) nkx1.2la (ENSOMEG00000008699) Oryzias_a ANCESTRAL SPECIES 4 ENSGT00940000174603 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 Chinese medaka MODERN SPECIES 557 itprip (ENSOSIG00000010674) ENSOSIG00000010673 ENSOSIG00000010671 sfr1 (ENSOSIG00000010670) ENSOSIG00000010668 slka (ENSOSIG00000010586) SH3PXD2A (ENSOSIG00000010570) ENSOSIG00000010567 ENSOSIG00000010179 add3b (ENSOSIG00000009048) MXI1 (ENSOSIG00000009032) smndc1 (ENSOSIG00000009027) ADRA2A (ENSOSIG00000009026) bnip3 (ENSOSIG00000009024) ##19 ppp2r2d (ENSOSIG00000008737) ##21 ebf3a (ENSOSIG00000004225) ##22 mgmt (ENSOSIG00000004110) ENSOSIG00000004107 ptpreb (ENSOSIG00000003819) Japanese Medaka HdrR MODERN SPECIES 6 CFAP43 (ENSORLG00000006175) sfr1 (ENSORLG00000028771) ENSORLG00000021987 slka (ENSORLG00000006110) SH3PXD2A (ENSORLG00000006049) ENSORLG00000006034 ENSORLG00000006025 ENSORLG00000006009 add3b (ENSORLG00000006001) MXI1 (ENSORLG00000005955) smndc1 (ENSORLG00000005934) ENSORLG00000005919 ENSORLG00000030653 bnip3 (ENSORLG00000005914) ##19 ppp2r2d (ENSORLG00000005885) ##21 ebf3a (ENSORLG00000005870) ##22 mgmt (ENSORLG00000022656) gnrh3 (ENSORLG00000005824) ptpe (ENSORLG00000005810) INSYN2A (ENSORLG00000005765) ENSORLG00000005762 ENSORLG00000024313 ADAM12 (ENSORLG00000005739) DHX32 (ENSORLG00000005725) EDRF1 (ENSORLG00000005690) CTBP2 (ENSORLG00000005671) zranb1b (ENSORLG00000005663) abraxas2 (ENSORLG00000005647) eef1akmt2 (ENSORLG00000005635) FAM53B (ENSORLG00000005619) ENSORLG00000028088 Cyprinodontiformes ANCESTRAL SPECIES 17 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Cyprinodontoidei ANCESTRAL SPECIES 14 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 NAME_4 ANCESTRAL SPECIES 2 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b.d ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 Sheepshead minnow MODERN SPECIES 544 add3b (ENSCVAG00000020511) MXI1 (ENSCVAG00000020440) smndc1 (ENSCVAG00000020432) ADRA2A (ENSCVAG00000020410) bnip3 (ENSCVAG00000020401) ##19 ppp2r2d (ENSCVAG00000020392) ##21 ebf3a (ENSCVAG00000020362) ##22 mgmt (ENSCVAG00000020266) gnrh3 (ENSCVAG00000020258) ptpreb (ENSCVAG00000020251) INSYN2A (ENSCVAG00000020187) ENSCVAG00000020172 ADAM12 (ENSCVAG00000020135) DHX32 (ENSCVAG00000020077) EDRF1 (ENSCVAG00000000517) Mummichog MODERN SPECIES 2208 ENSFHEG00000019898 add3b (ENSFHEG00000020058) ENSFHEG00000020126 smndc1 (ENSFHEG00000020150) ADRA2A (ENSFHEG00000020159) bnip3 (ENSFHEG00000020214) ##19 ppp2r2d (ENSFHEG00000020279) ##21 ebf3a (ENSFHEG00000020374) ##22 mgmt (ENSFHEG00000020384) ENSFHEG00000020405 ptpreb (ENSFHEG00000020467) INSYN2A (ENSFHEG00000000512) ENSFHEG00000020554 ENSFHEG00000020564 ENSFHEG00000020596 DHX32 (ENSFHEG00000020715) EDRF1 (ENSFHEG00000020906) ENSFHEG00000021013 zranb1b (ENSFHEG00000021079) abraxas2 (ENSFHEG00000021091) eef1akmt2 (ENSFHEG00000021112) FAM53B (ENSFHEG00000021122) ENSFHEG00000021128 Poeciliinae ANCESTRAL SPECIES 16 ENSGT00390000018550 ENSGT00940000168136 ENSGT00940000166749 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Poecilia ANCESTRAL SPECIES 11 ENSGT00390000018550 ENSGT00940000168136 ENSGT00940000166749 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f NAME_6 ANCESTRAL SPECIES 34 ENSGT00940000174603 ENSGT00390000018550.i ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Amazon molly MODERN SPECIES 264 CFAP43 (ENSPFOG00000015825) sfr1 (ENSPFOG00000015904) ENSPFOG00000015924 slka (ENSPFOG00000016103) SH3PXD2A (ENSPFOG00000016214) ENSPFOG00000022161 ENSPFOG00000016270 ENSPFOG00000016303 ENSPFOG00000016663 add3b (ENSPFOG00000016965) MXI1 (ENSPFOG00000017086) smndc1 (ENSPFOG00000017113) ADRA2A (ENSPFOG00000020919) bnip3 (ENSPFOG00000017122) ##19 ppp2r2d (ENSPFOG00000017131) ##21 ebf3a (ENSPFOG00000017183) ##22 mgmt (ENSPFOG00000017298) gnrh3 (ENSPFOG00000017305) ptpreb (ENSPFOG00000017323) INSYN2A (ENSPFOG00000017465) ENSPFOG00000017475 ENSPFOG00000017511 ADAM12 (ENSPFOG00000017518) DHX32 (ENSPFOG00000017636) EDRF1 (ENSPFOG00000017678) ctbp2a (ENSPFOG00000017800) ENSPFOG00000023871 zranb1b (ENSPFOG00000017835) abraxas2 (ENSPFOG00000017841) eef1akmt2 (ENSPFOG00000017870) FAM53B (ENSPFOG00000017873) Sailfin molly MODERN SPECIES 251 ENSPLAG00000011787 sfr1 (ENSPLAG00000011766) ENSPLAG00000011760 slka (ENSPLAG00000011750) SH3PXD2A (ENSPLAG00000011702) ENSPLAG00000011477 ENSPLAG00000011468 ENSPLAG00000011413 ENSPLAG00000010745 add3b (ENSPLAG00000010399) MXI1 (ENSPLAG00000010381) smndc1 (ENSPLAG00000010372) ADRA2A (ENSPLAG00000010351) bnip3 (ENSPLAG00000010338) ##19 ppp2r2d (ENSPLAG00000010308) ##21 ebf3a (ENSPLAG00000010273) ##22 mgmt (ENSPLAG00000010217) gnrh3 (ENSPLAG00000010205) ptpreb (ENSPLAG00000010194) Guppy MODERN SPECIES 445 ENSPREG00000013219 slka (ENSPREG00000013152) ENSPREG00000013139 ENSPREG00000013130 SH3PXD2A (ENSPREG00000012839) ENSPREG00000012781 ENSPREG00000012500 ENSPREG00000012399 ENSPREG00000012373 add3b (ENSPREG00000012320) MXI1 (ENSPREG00000012294) smndc1 (ENSPREG00000012279) ADRA2A (ENSPREG00000012269) bnip3 (ENSPREG00000012252) ##19 ppp2r2d (ENSPREG00000012209) ##21 ebf3a (ENSPREG00000012168) ##22 mgmt (ENSPREG00000012155) gnrh3 (ENSPREG00000011902) ptpreb (ENSPREG00000011843) INSYN2A (ENSPREG00000011813) ENSPREG00000011795 ENSPREG00000011783 ADAM12 (ENSPREG00000011754) DHX32 (ENSPREG00000011733) EDRF1 (ENSPREG00000011628) ENSPREG00000011568 zranb1b (ENSPREG00000011524) abraxas2 (ENSPREG00000011492) eef1akmt2 (ENSPREG00000011465) FAM53B (ENSPREG00000011454) nkx1.2la (ENSPREG00000011441) Platyfish MODERN SPECIES 14 ENSXMAG00000012914 slka (ENSXMAG00000012897) ENSXMAG00000024181 ENSXMAG00000026759 SH3PXD2A (ENSXMAG00000007295) ENSXMAG00000007301 ENSXMAG00000012867 ENSXMAG00000012795 add3b (ENSXMAG00000012762) MXI1 (ENSXMAG00000012758) smndc1 (ENSXMAG00000012755) ADRA2A (ENSXMAG00000019483) bnip3 (ENSXMAG00000012753) ##19 ppp2r2d (ENSXMAG00000012743) ##21 mgmt (ENSXMAG00000012712) ebf3a (ENSXMAG00000012715) ##22 gnrh3 (ENSXMAG00000012710) ptpreb (ENSXMAG00000012673) INSYN2A (ENSXMAG00000012672) ENSXMAG00000012648 ENSXMAG00000023066 ADAM12 (ENSXMAG00000012632) DHX32 (ENSXMAG00000012613) EDRF1 (ENSXMAG00000012589) ENSXMAG00000020904 zranb1b (ENSXMAG00000012557) abraxas2 (ENSXMAG00000021481) eef1akmt2 (ENSXMAG00000012537) FAM53B (ENSXMAG00000029687) NKX1-2 (ENSXMAG00000019481) CHST15 (ENSXMAG00000012526) Aplocheiloidei ANCESTRAL SPECIES 22 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Turquoise killifish MODERN SPECIES 1612 polh (ENSNFUG00015016679) ENSNFUG00015016664 ITPRIP (ENSNFUG00015016662) ENSNFUG00015016653 sfr1 (ENSNFUG00015016648) ENSNFUG00015016627 slka (ENSNFUG00015011654) SH3PXD2A (ENSNFUG00015011359) B3GNT3 (ENSNFUG00015011349) ENSNFUG00015011342 SORCS3 (ENSNFUG00015009165) SORCS1 (ENSNFUG00015007967) NEURL (ENSNFUG00015007846) BNIP4 (ENSNFUG00015007839) ##19 ppp2r2d (ENSNFUG00015007580) ##21 EBF3 (ENSNFUG00015007404) ##22 MGMT (ENSNFUG00015007365) ENSNFUG00015007359 ptpreb (ENSNFUG00015006301) FAM196A (ENSNFUG00015006144) IDO1 (ENSNFUG00015006125) ENSNFUG00015006121 ADAM12 (ENSNFUG00015006044) DHX32 (ENSNFUG00015005945) EDRF1 (ENSNFUG00015005837) ENSNFUG00015024925 ZRANB1 (ENSNFUG00015024903) abraxas2 (ENSNFUG00015024899) METTL10 (ENSNFUG00015024898) FAM53B (ENSNFUG00015024896) nkx1.2la (ENSNFUG00015024895) Mangrove rivulus DUPLICATION Mangrove rivulus MODERN SPECIES 3 sfr1 (ENSKMAG00000019791) ENSKMAG00000019802 slka (ENSKMAG00000019833) ENSKMAG00000019883 SH3PXD2A (ENSKMAG00000019906) ENSKMAG00000019976 ENSKMAG00000019991 ENSKMAG00000020026 ENSKMAG00000020057 add3b (ENSKMAG00000020087) MXI1 (ENSKMAG00000020122) smndc1 (ENSKMAG00000020134) ENSKMAG00000020150 bnip3 (ENSKMAG00000020164) ##19 ppp2r2d (ENSKMAG00000020182) ##21 ebf3a (ENSKMAG00000020208) ##22 mgmt (ENSKMAG00000020237) gnrh3 (ENSKMAG00000020272) ptpreb (ENSKMAG00000020283) INSYN2A (ENSKMAG00000020299) ENSKMAG00000020311 ENSKMAG00000020337 ADAM12 (ENSKMAG00000020371) DHX32 (ENSKMAG00000020436) EDRF1 (ENSKMAG00000020507) tex36 (ENSKMAG00000020590) ENSKMAG00000020633 zranb1b (ENSKMAG00000020697) abraxas2 (ENSKMAG00000020748) eef1akmt2 (ENSKMAG00000020780) FAM53B (ENSKMAG00000020791) Mangrove rivulus MODERN SPECIES 11 gpd1b (ENSKMAG00000014583) smarcd1 (ENSKMAG00000014527) ENSKMAG00000014476 ENSKMAG00000014435 ENSKMAG00000014411 CELA1 (ENSKMAG00000014398) gls2b (ENSKMAG00000014362) bloc1s1 (ENSKMAG00000014318) itcha (ENSKMAG00000014234) pxmp4 (ENSKMAG00000014204) tgm5l (ENSKMAG00000014174) eya2 (ENSKMAG00000014120) GCNT7 (ENSKMAG00000014094) rtf2 (ENSKMAG00000014071) tfap2c (ENSKMAG00000014011) ENSKMAG00000013976 ##22 CDH22 (ENSKMAG00000013931) ZNFX1 (ENSKMAG00000013898) tbc1d20 (ENSKMAG00000013864) rbck1 (ENSKMAG00000013826) NECAB3 (ENSKMAG00000013778) cbfa2t2 (ENSKMAG00000013728) SNTA1 (ENSKMAG00000013690) tox2 (ENSKMAG00000013666) st7l (ENSKMAG00000013608) wnt2ba (ENSKMAG00000013565) CTTNBP2NL (ENSKMAG00000013548) KCND3 (ENSKMAG00000013514) INKA2 (ENSKMAG00000013505) rap1ab (ENSKMAG00000013480) timm17a (ENSKMAG00000013455) Percomorphaceae_C ANCESTRAL SPECIES 18 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Percomorphaceae_D ANCESTRAL SPECIES 19 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Anabantaria ANCESTRAL SPECIES 17 ENSGT00940000155351 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Zig-zag eel MODERN SPECIES 6 ENSMAMG00000021001 ENSMAMG00000026634 SFR1 (ENSMAMG00000019022) ENSMAMG00000018985 slka (ENSMAMG00000018944) SH3PXD2A (ENSMAMG00000018862) ENSMAMG00000018825 ENSMAMG00000018370 ENSMAMG00000018299 ADD3 (ENSMAMG00000018273) ENSMAMG00000018259 smndc1 (ENSMAMG00000018233) ENSMAMG00000018222 bnip3 (ENSMAMG00000018204) ##19 PPP2R2D (ENSMAMG00000018190) ##21 ebf3a (ENSMAMG00000018163) ##22 MGMT (ENSMAMG00000018143) ENSMAMG00000017760 ENSMAMG00000017435 INSYN2A (ENSMAMG00000017411) ENSMAMG00000017408 ENSMAMG00000017395 ADAM12 (ENSMAMG00000017378) DHX32 (ENSMAMG00000017334) EDRF1 (ENSMAMG00000017278) ENSMAMG00000017264 ENSMAMG00000017225 ZRANB1 (ENSMAMG00000017186) ABRAXAS2 (ENSMAMG00000017165) EEF1AKMT2 (ENSMAMG00000017142) FAM53B (ENSMAMG00000017131) Anabantoidei ANCESTRAL SPECIES 17 ENSGT00940000163896 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Climbing perch MODERN SPECIES 6 ENSATEG00000005933 ENSATEG00000029509 SFR1 (ENSATEG00000005966) ENSATEG00000005972 slka (ENSATEG00000006000) SH3PXD2A (ENSATEG00000026902) ENSATEG00000006148 ENSATEG00000006196 ENSATEG00000006640 ADD3 (ENSATEG00000006773) MXI1 (ENSATEG00000006823) smndc1 (ENSATEG00000006830) ENSATEG00000006876 bnip3 (ENSATEG00000025756) ##19 PPP2R2D (ENSATEG00000026322) ##21 ebf3a (ENSATEG00000006975) ##22 MGMT (ENSATEG00000007031) ENSATEG00000007047 ENSATEG00000007392 INSYN2A (ENSATEG00000007454) ENSATEG00000007472 ENSATEG00000007485 ADAM12 (ENSATEG00000007492) DHX32 (ENSATEG00000007501) EDRF1 (ENSATEG00000007531) ENSATEG00000026049 ENSATEG00000007648 ZRANB1 (ENSATEG00000007705) ABRAXAS2 (ENSATEG00000007763) EEF1AKMT2 (ENSATEG00000007817) FAM53B (ENSATEG00000007864) Siamese fighting fish MODERN SPECIES 6 itprip (ENSBSLG00000023875) ENSBSLG00000023901 ENSBSLG00000024000 sfr1 (ENSBSLG00000024007) ENSBSLG00000024011 slka (ENSBSLG00000024080) SH3PXD2A (ENSBSLG00000024641) ENSBSLG00000024677 ENSBSLG00000024687 ENSBSLG00000024755 add3b (ENSBSLG00000024923) MXI1 (ENSBSLG00000025156) smndc1 (ENSBSLG00000025158) bnip3 (ENSBSLG00000025160) ##19 ppp2r2d (ENSBSLG00000025168) ##21 ebf3a (ENSBSLG00000025213) ##22 mgmt (ENSBSLG00000025255) ENSBSLG00000025258 ptpreb (ENSBSLG00000025291) INSYN2A (ENSBSLG00000025316) ENSBSLG00000025318 INSYN2A (ENSBSLG00000025319) ENSBSLG00000025321 ENSBSLG00000025323 ADAM12 (ENSBSLG00000025331) DHX32 (ENSBSLG00000025333) EDRF1 (ENSBSLG00000025341) ENSBSLG00000025348 zranb1b (ENSBSLG00000025350) abraxas2 (ENSBSLG00000025359) eef1akmt2 (ENSBSLG00000025361) Carangaria ANCESTRAL SPECIES 19 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Pleuronectoidei ANCESTRAL SPECIES 25 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Turbot MODERN SPECIES 6 GSTO1 (ENSSMAG00000020371) ENSSMAG00000019338 sfr1 (ENSSMAG00000036788) ENSSMAG00000020324 slka (ENSSMAG00000020242) SH3PXD2A (ENSSMAG00000020233) ENSSMAG00000020207 ENSSMAG00000020199 ENSSMAG00000020168 ADD3 (ENSSMAG00000020133) ENSSMAG00000020129 smndc1 (ENSSMAG00000020118) ENSSMAG00000020115 bnip3 (ENSSMAG00000020100) ##19 PPP2R2D (ENSSMAG00000020085) ##21 ebf3a (ENSSMAG00000020066) ##22 MGMT (ENSSMAG00000020050) sGnRH (ENSSMAG00000020043) ENSSMAG00000020028 INSYN2A (ENSSMAG00000020022) ENSSMAG00000020013 ENSSMAG00000019981 ENSSMAG00000019973 ADAM12 (ENSSMAG00000019948) DHX32 (ENSSMAG00000019943) EDRF1 (ENSSMAG00000019847) ENSSMAG00000025545 ENSSMAG00000019758 ZRANB1 (ENSSMAG00000019731) ABRAXAS2 (ENSSMAG00000034542) EEF1AKMT2 (ENSSMAG00000019714) Tongue sole MODERN SPECIES 3 ENSCSEG00000016052 gsto2 (ENSCSEG00000015912) itprip (ENSCSEG00000015896) ENSCSEG00000015887 slka (ENSCSEG00000015824) SH3PXD2A (ENSCSEG00000015795) ENSCSEG00000015774 ENSCSEG00000015752 ENSCSEG00000015700 add3b (ENSCSEG00000015656) MXI1 (ENSCSEG00000015639) smndc1 (ENSCSEG00000015621) ADRA2A (ENSCSEG00000015615) bnip3 (ENSCSEG00000015609) ##19 ppp2r2d (ENSCSEG00000015594) ##21 ebf3a (ENSCSEG00000015565) ##22 mgmt (ENSCSEG00000015563) gnrh3 (ENSCSEG00000015559) ptpreb (ENSCSEG00000015501) INSYN2A (ENSCSEG00000015481) ENSCSEG00000015449 ENSCSEG00000015440 ADAM12 (ENSCSEG00000015418) EDRF1 (ENSCSEG00000015382) ctbp2a (ENSCSEG00000015340) zranb1b (ENSCSEG00000015297) abraxas2 (ENSCSEG00000015283) eef1akmt2 (ENSCSEG00000015275) FAM53B (ENSCSEG00000015267) kif11 (ENSCSEG00000015215) ENSCSEG00000015195 Carangaria_A ANCESTRAL SPECIES 25 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Seriola ANCESTRAL SPECIES 17 ENSGT00390000018550 ENSGT01100000266605 ENSGT00940000163514.C ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Yellowtail amberjack MODERN SPECIES 2131 ENSSLDG00000016863 ENSSLDG00000017118 add3b (ENSSLDG00000017183) MXI1 (ENSSLDG00000017312) smndc1 (ENSSLDG00000017325) ADRA2A (ENSSLDG00000017338) bnip3 (ENSSLDG00000017389) ##19 ppp2r2d (ENSSLDG00000017354) ##21 ebf3a (ENSSLDG00000017440) ##22 mgmt (ENSSLDG00000017487) gnrh3 (ENSSLDG00000017499) ptpreb (ENSSLDG00000017517) INSYN2A (ENSSLDG00000017578) ENSSLDG00000017592 ENSSLDG00000017636 Greater amberjack MODERN SPECIES 147 ENSSDUG00000013643 ENSSDUG00000013668 slka (ENSSDUG00000013725) ENSSDUG00000013815 SH3PXD2A (ENSSDUG00000013835) ENSSDUG00000013892 ENSSDUG00000013988 ENSSDUG00000015135 add3b (ENSSDUG00000015218) MXI1 (ENSSDUG00000015315) smndc1 (ENSSDUG00000015330) ADRA2A (ENSSDUG00000015352) bnip3 (ENSSDUG00000015359) ##19 ENSSDUG00000015389 ppp2r2d (ENSSDUG00000015401) ##21 ebf3a (ENSSDUG00000015426) ##22 mgmt (ENSSDUG00000015462) gnrh3 (ENSSDUG00000015470) ptpreb (ENSSDUG00000015498) INSYN2A (ENSSDUG00000015783) ENSSDUG00000015800 ADAM12 (ENSSDUG00000015848) DHX32 (ENSSDUG00000015874) EDRF1 (ENSSDUG00000015911) tex36 (ENSSDUG00000016010) ENSSDUG00000016025 ZRANB1 (ENSSDUG00000016090) abraxas2 (ENSSDUG00000016141) eef1akmt2 (ENSSDUG00000016179) FAM53B (ENSSDUG00000016195) nkx1.2la (ENSSDUG00000016204) Barramundi perch MODERN SPECIES 137 ENSLCAG00010007176 sfr1 (ENSLCAG00010007224) ENSLCAG00010007228 slka (ENSLCAG00010007394) SH3PXD2A (ENSLCAG00010008004) ENSLCAG00010008023 ENSLCAG00010008030 ENSLCAG00010008185 ENSLCAG00010008896 add3b (ENSLCAG00010009780) MXI1 (ENSLCAG00010009819) smndc1 (ENSLCAG00010009821) ADRA2A (ENSLCAG00010009829) bnip3 (ENSLCAG00010009847) ##19 ppp2r2d (ENSLCAG00010009854) ##21 ebf3a (ENSLCAG00010009962) ##22 mgmt (ENSLCAG00010010214) ENSLCAG00010010221 ptpreb (ENSLCAG00010010517) INSYN2A (ENSLCAG00010011826) ENSLCAG00010011833 ENSLCAG00010011835 ADAM12 (ENSLCAG00010011859) DHX32 (ENSLCAG00010011925) EDRF1 (ENSLCAG00010011995) ctbp2a (ENSLCAG00010012196) zranb1b (ENSLCAG00010012220) abraxas2 (ENSLCAG00010012225) eef1akmt2 (ENSLCAG00010012230) FAM53B (ENSLCAG00010012235) nkx1.2la (ENSLCAG00010012238) Eupercaria ANCESTRAL SPECIES 15 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Tetraodontidae ANCESTRAL SPECIES 7 ENSGT00530000067963 ENSGT00940000163896 ENSGT00530000064714 ENSGT00940000166749 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 ENSGT00390000004719.a Tetraodon MODERN SPECIES 9 ENSTNIG00000013320 ENSTNIG00000013321 ENSTNIG00000013322 slka (ENSTNIG00000013323) SH3PXD2A (ENSTNIG00000013324) ENSTNIG00000013325 ENSTNIG00000013326 ENSTNIG00000013327 ENSTNIG00000013328 add3b (ENSTNIG00000013329) MXI1 (ENSTNIG00000013330) smndc1 (ENSTNIG00000013331) ADRA2A (ENSTNIG00000013332) bnip3 (ENSTNIG00000013333) ##19 ppp2r2d (ENSTNIG00000013334) ##21 ENSTNIG00000013335 ##22 MGMT (ENSTNIG00000013336) ENSTNIG00000013337 ptpreb (ENSTNIG00000013338) INSYN2A (ENSTNIG00000013339) ADAM12 (ENSTNIG00000013340) DHX32 (ENSTNIG00000013341) EDRF1 (ENSTNIG00000013342) ENSTNIG00000013343 zranb1b (ENSTNIG00000000061) abraxas2 (ENSTNIG00000013344) eef1akmt2 (ENSTNIG00000013345) FAM53B (ENSTNIG00000013346) nkx1.2la (ENSTNIG00000013347) CHST15 (ENSTNIG00000013348) GPR26 (ENSTNIG00000013349) Fugu MODERN SPECIES 16 prokr1b (ENSTRUG00000011558) plek (ENSTRUG00000023070) dkk1a (ENSTRUG00000010760) prkg1a (ENSTRUG00000010554) sgms1a (ENSTRUG00000010449) ENSTRUG00000031571 minpp1a (ENSTRUG00000010304) papss2a (ENSTRUG00000010020) ENSTRUG00000009851 ENSTRUG00000023728 ENSTRUG00000024457 ENSTRUG00000024473 slka (ENSTRUG00000008662) SH3PXD2A (ENSTRUG00000008431) ENSTRUG00000008351 ebf3a (ENSTRUG00000005721) ##22 mgmt (ENSTRUG00000023887) gnrh3 (ENSTRUG00000005572) ptpreb (ENSTRUG00000004436) INSYN2A (ENSTRUG00000031929) ENSTRUG00000031598 ADAM12 (ENSTRUG00000003817) DHX32 (ENSTRUG00000002834) EDRF1 (ENSTRUG00000001948) ENSTRUG00000025392 zranb1b (ENSTRUG00000001497) abraxas2 (ENSTRUG00000025835) eef1akmt2 (ENSTRUG00000001336) FAM53B (ENSTRUG00000001282) nkx1.2la (ENSTRUG00000001257) CHST15 (ENSTRUG00000001214) Eupecaria_A ANCESTRAL SPECIES 1 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Ballan wrasse MODERN SPECIES 612 bnip3 (ENSLBEG00000010497) ##19 ppp2r2d (ENSLBEG00000010439) ##21 ebf3a (ENSLBEG00000010343) ##22 mgmt (ENSLBEG00000010324) gnrh3 (ENSLBEG00000010314) ptpreb (ENSLBEG00000010252) Eupecaria_B ANCESTRAL SPECIES 3 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 Eupecaria_C ANCESTRAL SPECIES 1 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Gilthead seabream MODERN SPECIES 6 ENSSAUG00010015519 ENSSAUG00010015514 sfr1 (ENSSAUG00010015512) ENSSAUG00010015508 slka (ENSSAUG00010011628) SH3PXD2A (ENSSAUG00010011549) ENSSAUG00010011543 ENSSAUG00010011255 ENSSAUG00010011063 add3b (ENSSAUG00010008801) MXI1 (ENSSAUG00010008765) smndc1 (ENSSAUG00010008762) ADRA2A (ENSSAUG00010008758) bnip3 (ENSSAUG00010008755) ##19 ppp2r2d (ENSSAUG00010008658) ##21 ebf3a (ENSSAUG00010008633) ##22 mgmt (ENSSAUG00010008621) ptpreb (ENSSAUG00010007329) INSYN2A (ENSSAUG00010007283) ENSSAUG00010007279 ENSSAUG00010007274 ADAM12 (ENSSAUG00010005289) DHX32 (ENSSAUG00010005172) EDRF1 (ENSSAUG00010003005) tex36 (ENSSAUG00010002920) ENSSAUG00010002526 zranb1b (ENSSAUG00010002370) abraxas2 (ENSSAUG00010002361) eef1akmt2 (ENSSAUG00010002354) FAM53B (ENSSAUG00010002351) nkx1.2la (ENSSAUG00010002344) Eupercaria_incertae_sedis ANCESTRAL SPECIES 1 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000159134.r.a.b.a ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000175884 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f European seabass MODERN SPECIES 1 CFAP43 (ENSDLAG00005018796) SFR1 (ENSDLAG00005030119) ENSDLAG00005018823 slka (ENSDLAG00005018991) SH3PXD2A (ENSDLAG00005020775) ENSDLAG00005020854 ENSDLAG00005020855 ENSDLAG00005020874 ENSDLAG00005021484 ADD3 (ENSDLAG00005021997) MXI1 (ENSDLAG00005027479) smndc1 (ENSDLAG00005000071) ENSDLAG00005000074 ENSDLAG00005034636 ##19 ENSDLAG00005000084 ##21 ENSDLAG00005000240 ##22 ENSDLAG00005000513 ENSDLAG00005000663 INSYN2A (ENSDLAG00005001838) ENSDLAG00005001842 ENSDLAG00005031375 ADAM12 (ENSDLAG00005001879) DHX32 (ENSDLAG00005002026) EDRF1 (ENSDLAG00005002093) ENSDLAG00005004083 ZRANB1 (ENSDLAG00005032089) EEF1AKMT2 (ENSDLAG00005004836) FAM53B (ENSDLAG00005004845) NKX1-2 (ENSDLAG00005004853) CHST15 (ENSDLAG00005004859) GPR26 (ENSDLAG00005004869) Large yellow croaker MODERN SPECIES 2 CFAP43 (ENSLCRG00005007449) sfr1 (ENSLCRG00005007466) ENSLCRG00005007468 ENSLCRG00005007469 slka (ENSLCRG00005007522) SH3PXD2A (ENSLCRG00005012367) ENSLCRG00005012370 ENSLCRG00005012398 ENSLCRG00005014199 add3b (ENSLCRG00005016619) MXI1 (ENSLCRG00005017259) smndc1 (ENSLCRG00005017261) ADRA2A (ENSLCRG00005017263) bnip3 (ENSLCRG00005017265) ##19 ppp2r2d (ENSLCRG00005017277) ##21 ebf3a (ENSLCRG00005017724) ##22 mgmt (ENSLCRG00005017741) gnrh3 (ENSLCRG00005017745) ptpreb (ENSLCRG00005017800) INSYN2A (ENSLCRG00005020250) ENSLCRG00005020253 ENSLCRG00005020254 ADAM12 (ENSLCRG00005020258) DHX32 (ENSLCRG00005020332) EDRF1 (ENSLCRG00005020346) tex36 (ENSLCRG00005020892) ENSLCRG00005020897 zranb1b (ENSLCRG00005020911) abraxas2 (ENSLCRG00005020922) eef1akmt2 (ENSLCRG00005020924) FAM53B (ENSLCRG00005020926) Perciformes ANCESTRAL SPECIES 17 ENSGT00940000155351 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Perciformes_a ANCESTRAL SPECIES 16 ENSGT00940000155351 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000166669.a ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 ENSGT00390000004719.a Channel bull blenny MODERN SPECIES 6 CFAP43 (ENSCGOG00000015721) sfr1 (ENSCGOG00000015761) ENSCGOG00000015762 ENSCGOG00000015767 slka (ENSCGOG00000015836) SH3PXD2A (ENSCGOG00000017488) ENSCGOG00000017513 ENSCGOG00000017567 ENSCGOG00000018838 add3b (ENSCGOG00000019210) MXI1 (ENSCGOG00000019295) smndc1 (ENSCGOG00000019299) ADRA2A (ENSCGOG00000019305) bnip3 (ENSCGOG00000020541) ##19 ppp2r2d (ENSCGOG00000019341) ##21 ebf3a (ENSCGOG00000020565) ##22 mgmt (ENSCGOG00000021318) gnrh3 (ENSCGOG00000021323) ptpreb (ENSCGOG00000021401) INSYN2A (ENSCGOG00000022750) ENSCGOG00000022751 ADAM12 (ENSCGOG00000022763) DHX32 (ENSCGOG00000022833) EDRF1 (ENSCGOG00000022860) ENSCGOG00000022992 zranb1b (ENSCGOG00000023103) abraxas2 (ENSCGOG00000023153) eef1akmt2 (ENSCGOG00000023163) FAM53B (ENSCGOG00000023164) nkx1.2la (ENSCGOG00000023165) CHST15 (ENSCGOG00000023167) Pike perch MODERN SPECIES 10 gsto2 (ENSSLUG00000019264) ENSSLUG00000019269 ENSSLUG00000019275 sfr1 (ENSSLUG00000019282) slka (ENSSLUG00000019323) SH3PXD2A (ENSSLUG00000019601) ENSSLUG00000019621 ENSSLUG00000019646 ENSSLUG00000019711 add3b (ENSSLUG00000019883) MXI1 (ENSSLUG00000021161) smndc1 (ENSSLUG00000021165) ADRA2A (ENSSLUG00000021167) bnip3 (ENSSLUG00000021172) ##19 ppp2r2d (ENSSLUG00000021191) ##21 ebf3a (ENSSLUG00000021239) ##22 mgmt (ENSSLUG00000021335) gnrh3 (ENSSLUG00000021338) ptpreb (ENSSLUG00000021492) ENSSLUG00000023067 ENSSLUG00000023070 INSYN2A (ENSSLUG00000023073) ENSSLUG00000023095 DHX32 (ENSSLUG00000023632) EDRF1 (ENSSLUG00000023739) ENSSLUG00000024016 zranb1b (ENSSLUG00000024064) abraxas2 (ENSSLUG00000024101) eef1akmt2 (ENSSLUG00000024110) FAM53B (ENSSLUG00000024119) nkx1.2la (ENSSLUG00000024124) Cottioidei ANCESTRAL SPECIES 17 ENSGT00940000163896 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000156184.b ENSGT00940000157732.f.b ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a ##19 ENSGT00950000182864.a.a ##21 ENSGT00950000182859.A.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000157227.h ENSGT00390000014797 ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f ENSGT00940000162535 Stickleback MODERN SPECIES 6 itprip (ENSGACG00000009284) ENSGACG00000009287 ENSGACG00000009307 ENSGACG00000009318 ENSGACG00000009340 slka (ENSGACG00000009370) ENSGACG00000009385 ENSGACG00000009390 ENSGACG00000009419 add3b (ENSGACG00000009438) MXI1 (ENSGACG00000009461) smndc1 (ENSGACG00000009468) ADRA2A (ENSGACG00000009518) bnip3 (ENSGACG00000009527) ##19 ppp2r2d (ENSGACG00000009543) ##21 ebf3a (ENSGACG00000009548) ##22 mgmt (ENSGACG00000009577) gnrh3 (ENSGACG00000009582) ptpreb (ENSGACG00000009597) INSYN2A (ENSGACG00000009611) ENSGACG00000009613 ADAM12 (ENSGACG00000009617) EDRF1 (ENSGACG00000009631) ENSGACG00000009651 zranb1b (ENSGACG00000009658) abraxas2 (ENSGACG00000009665) eef1akmt2 (ENSGACG00000009677) FAM53B (ENSGACG00000009695) nkx1.2la (ENSGACG00000009698) CHST15 (ENSGACG00000009700) GPR26 (ENSGACG00000009708) Lumpfish MODERN SPECIES 6 ENSCLMG00005011477 ENSCLMG00005011473 sfr1 (ENSCLMG00005011472) ENSCLMG00005011464 slka (ENSCLMG00005004822) SH3PXD2A (ENSCLMG00005021373) ENSCLMG00005021372 ENSCLMG00005021351 ENSCLMG00005021350 add3b (ENSCLMG00005021305) ENSCLMG00005021304 smndc1 (ENSCLMG00005021303) ADRA2A (ENSCLMG00005021301) bnip3 (ENSCLMG00005021300) ##19 ppp2r2d (ENSCLMG00005021158) ##21 ebf3a (ENSCLMG00005021128) ##22 mgmt (ENSCLMG00005021124) gnrh3 (ENSCLMG00005021123) ptpreb (ENSCLMG00005021122) INSYN2A (ENSCLMG00005021119) ENSCLMG00005021117 ENSCLMG00005021116 ADAM12 (ENSCLMG00005021115) DHX32 (ENSCLMG00005021096) EDRF1 (ENSCLMG00005020733) ctbp2a (ENSCLMG00005020689) zranb1b (ENSCLMG00005020632) abraxas2 (ENSCLMG00005020630) eef1akmt2 (ENSCLMG00005020628) FAM53B (ENSCLMG00005020627) nkx1.2la (ENSCLMG00005020626) Protacanthopterygii DUPLICATION Protacanthopterygii DUPLICATION Protacanthopterygii ANCESTRAL SPECIES 9 ENSGT00940000158426 ENSGT00940000165645 ENSGT01070000253744.a.b ENSGT00930000151028 ENSGT00940000163461.a.a.a.b.c.b.b.b.a.b.a ENSGT00990000203721.b.a ENSGT00940000165189 ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.a ##19 ENSGT00950000182864.a.a.s.a ##21 ENSGT00940000160593 ENSGT00550000075030 ENSGT00950000182859.A.b.eb.a ##22 ENSGT00940000156570.a ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974 ENSGT00530000063787.B.d.a ENSGT00990000210288 ENSGT00940000153123.C.b ENSGT00940000155495.C.a.a ENSGT00940000160878.f ENSGT00940000157227.g ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00940000154430.c.a ENSGT00940000158045.a Salmoninae ANCESTRAL SPECIES 142 ENSGT00390000005448.c ENSGT00940000158426.e ENSGT00940000165645 ENSGT01070000253744.a.b ENSGT00930000151028 ENSGT00940000163461.a.a.a.b.c.b.b.b.a.b.a.a.a ENSGT00940000165189 ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.a ##19 ENSGT00950000182864.a.a.s.a ##21 ENSGT00940000160593 ENSGT00550000075030.a ENSGT00950000182859.A.b.eb.a ##22 ENSGT00940000156570.a.d ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974.d ENSGT00530000063787.B.d.a ENSGT00990000210288 ENSGT00940000153123.C.b ENSGT00940000155495.C.a.a ENSGT00940000157227.g ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00940000154430.c.a ENSGT00940000158045.a ENSGT00530000063474.A Huchen MODERN SPECIES 5104 ENSHHUG00000051644 ##22 Salmoninae_a ANCESTRAL SPECIES 100 ENSGT00390000005448.c ENSGT00940000158426.e ENSGT00940000165645 ENSGT01070000253744.a.b ENSGT00930000151028 ENSGT00940000163461.a.a.a.b.c.b.b.b.a.b.a.a.a ENSGT00990000203721.b.a.a.a ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00390000013415.a.a.a ##19 ENSGT00950000182864.a.a.s.a ##21 ENSGT00940000160593 ENSGT00550000075030.a ENSGT00950000182859.A.b.eb.a ##22 ENSGT00940000156570.a.d ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974.d ENSGT00530000063787.B.d.a ENSGT00990000210288 ENSGT00940000153123.C.b ENSGT00940000155495.C.a.a ENSGT00940000157227.g ENSGT00390000000696 ENSGT00390000009853 ENSGT00940000159140.d ENSGT00940000154430.c.a ENSGT00940000158045.a ENSGT00530000063474.A Oncorhynchus DUPLICATION Oncorhynchus DUPLICATION Oncorhynchus DUPLICATION Oncorhynchus ANCESTRAL SPECIES 79 ENSGT00730000111199 ENSGT00940000165641 ENSGT00390000005448.d.a.b.a ENSGT00390000005448.c ENSGT00940000158426.e ENSGT00940000165645 ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT01100000264331.a ENSGT00940000153713.A ENSGT00390000013415.a.a.a ##19 ENSGT00950000182864.a.a.s.a ##21 ENSGT00940000160593 ENSGT00550000075030.a ENSGT00950000182859.A.b.eb.a.a.a.a ##22 ENSGT00950000182859.A.b.eb.a.a.b ##22 ENSGT00940000156570.a.d ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974.c.b.b.a.a ENSGT00530000063787.B.d.a ENSGT00940000155495.C.a.a ENSGT00940000157227.g ENSGT00390000000696 ENSGT00390000009853.y.a ENSGT00390000009853.z ENSGT00940000159140.d.h ENSGT00940000154430.c.a ENSGT00940000158045.a ENSGT00530000063474.A Rainbow trout DUPLICATION Rainbow trout MODERN SPECIES 15 polr3a (ENSOMYG00000000772) ENSOMYG00000056018 ENSOMYG00000051709 ENSOMYG00000048272 ENSOMYG00000054108 ENSOMYG00000061540 ENSOMYG00000033933 ENSOMYG00000068634 dpysl4 (ENSOMYG00000057457) ##16 ENSOMYG00000058675 ENSOMYG00000063132 bnip3 (ENSOMYG00000000560) ##19 ppp2r2d (ENSOMYG00000063840) ##21 ENSOMYG00000067832 glrx3 (ENSOMYG00000058551) ENSOMYG00000061551 ##22 ENSOMYG00000061945 ENSOMYG00000048990 ENSOMYG00000061400 sec23ip (ENSOMYG00000043132) inpp5f (ENSOMYG00000042972) ENSOMYG00000072546 bag3 (ENSOMYG00000042950) tial1 (ENSOMYG00000042495) ENSOMYG00000042420 ENSOMYG00000060320 ENSOMYG00000042397 ENSOMYG00000042373 ENSOMYG00000042356 ENSOMYG00000073186 ENSOMYG00000062879 Rainbow trout MODERN SPECIES ENSOMYG00000000741 ENSOMYG00000057255 ENSOMYG00000035261 ENSOMYG00000001005 ENSOMYG00000069386 dpysl4 (ENSOMYG00000066705) ##16 ENSOMYG00000067189 bnip3 (ENSOMYG00000000538) ##19 ppp2r2d (ENSOMYG00000055335) ##21 ENSOMYG00000058347 ENSOMYG00000074923 ENSOMYG00000053642 ENSOMYG00000062613 ENSOMYG00000051500 glrx3 (ENSOMYG00000077226) ebf3a (ENSOMYG00000000617) ##22 ENSOMYG00000064886 ENSOMYG00000038499 ENSOMYG00000055640 ENSOMYG00000063738 ENSOMYG00000072300 ENSOMYG00000066994 ENSOMYG00000055563 CLRN3 (ENSOMYG00000000959) foxi1 (ENSOMYG00000038368) dock1 (ENSOMYG00000070523) INSYN2A (ENSOMYG00000060805) ENSOMYG00000053731 ENSOMYG00000052817 ADAM12 (ENSOMYG00000071065) ENSOMYG00000069654 Oncorhynchus_a ANCESTRAL SPECIES 458 ENSGT00940000160593 ENSGT00550000075030.a ENSGT00950000182859.A.b.eb.a.a.a.a ##22 Coho salmon MODERN SPECIES 1318 glrx3 (ENSOKIG00005036013) EBF3 (ENSOKIG00005035998) ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182859.A.b.eb.a.a.a.b ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000182859.A.b.eb.a.a.a.b ##22 Coho salmon MODERN SPECIES 372 ENSOKIG00005021826 ##22 Oncorhynchus ANCESTRAL SPECIES 79 ENSGT00940000165641 ENSGT00390000005448.d.a.b.a ENSGT00390000005448.c ENSGT00940000158426.e ENSGT00940000165645 ENSGT00940000155021 ENSGT00970000193390.c.b.b.b.b.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT01100000264331.a ENSGT00940000153713.A ENSGT00390000013415.a.a.a ##19 ENSGT00950000182864.a.a.s.a ##21 ENSGT00940000160593 ENSGT00550000075030.a ENSGT00950000182859.A.b.eb.a.a.a.a ##22 ENSGT00950000182859.A.b.eb.a.a.b ##22 ENSGT00940000156570.a.d ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974.c.b.b.a.a ENSGT00530000063787.B.d.a ENSGT00940000155495.C.a.a ENSGT00940000157227.g ENSGT00390000000696 ENSGT00390000009853.y.a ENSGT00390000009853.z ENSGT00940000159140.d.h ENSGT00940000154430.c.a ENSGT00940000158045.a ENSGT00530000063474.A ENSGT00530000063371.B.e Rainbow trout MODERN SPECIES 15 ENSOMYG00000066187 ENSOMYG00000065124 ENSOMYG00000056805 ENSOMYG00000062049 ENSOMYG00000055109 ENSOMYG00000050818 ENSOMYG00000057812 ENSOMYG00000062826 ENSOMYG00000031437 REL (ENSOMYG00000044569) ENSOMYG00000072111 ENSOMYG00000063787 ENSOMYG00000053535 ENSOMYG00000076967 ENSOMYG00000077783 ebf3a (ENSOMYG00000050048) ##22 ENSOMYG00000069772 ENSOMYG00000048837 ENSOMYG00000075550 PTPRE (ENSOMYG00000035941) CLRN3 (ENSOMYG00000076734) foxi1 (ENSOMYG00000024914) dock1 (ENSOMYG00000065093) ENSOMYG00000059389 INSYN2A (ENSOMYG00000055079) ENSOMYG00000076992 ENSOMYG00000070944 ENSOMYG00000057134 ENSOMYG00000066153 ADAM12 (ENSOMYG00000060036) ENSOMYG00000056566 Oncorhynchus_a ANCESTRAL SPECIES 356 ENSGT00950000182859.A.b.eb.a.a.b ##22 ENSGT00940000156570.a.d ENSGT00850000132319.b ENSGT00940000164576.a ENSGT00940000154974.c.b.b.a.b.b Coho salmon MODERN SPECIES 33 ascc1 (ENSOKIG00005044806) ENSOKIG00005044840 SPOCK2 (ENSOKIG00005044843) ENSOKIG00005044847 ppa1a (ENSOKIG00005044852) lrrc20 (ENSOKIG00005044862) ENSOKIG00005044998 ndr2 (ENSOKIG00005046544) ENSOKIG00005046548 ENSOKIG00005046554 ENSOKIG00005046565 ENSOKIG00005046657 bnip3 (ENSOKIG00005046822) ##19 ENSOKIG00005046839 #21 ENSOKIG00005046968 ##22 ebf3a (ENSOKIG00005046976) ##22 PTPRE (ENSOKIG00005047066) CLRN3 (ENSOKIG00005048151) foxi1 (ENSOKIG00005048153) dock1 (ENSOKIG00005048213) ENSOKIG00005048608 ENSOKIG00005048609 ENSOKIG00005048613 ENSOKIG00005048614 oat (ENSOKIG00005048618) CHST15 (ENSOKIG00005048643) CPXM2 (ENSOKIG00005048676) ENSOKIG00005048865 ENSOKIG00005048868 GPR26 (ENSOKIG00005048878) bub3 (ENSOKIG00005048894) Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182859.A.b.eb.a.b ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000182859.A.b.eb.a.b ##22 Chinook salmon MODERN SPECIES 847 ENSOTSG00005020478 ENSOTSG00005020480 ##22 Salmo ANCESTRAL SPECIES 309 ENSGT00390000013415.a.a.a.e ##19 ENSGT00950000182864.a.a.s.a.b ##21 ENSGT00940000160593.f ENSGT00550000075030.a ENSGT00950000182859.A.b.eb.a ##22 Atlantic salmon DUPLICATION Atlantic salmon MODERN SPECIES ENSSSAG00000101160 polr3a (ENSSSAG00000030720) ENSSSAG00000099178 ENSSSAG00000120163 ENSSSAG00000004584 ENSSSAG00000091142 ENSSSAG00000016768 ENSSSAG00000090711 dpysl4 (ENSSSAG00000016044) ##16 ENSSSAG00000097204 bnip3 (ENSSSAG00000000255) ##19 ppp2r2d (ENSSSAG00000078083) ##21 ENSSSAG00000084340 ENSSSAG00000104252 glrx3 (ENSSSAG00000084500) ebf3a (ENSSSAG00000119863) ##22 ENSSSAG00000103583 PTPRE (ENSSSAG00000044236) ENSSSAG00000091897 foxi1 (ENSSSAG00000000154) dock1 (ENSSSAG00000120409) INSYN2A (ENSSSAG00000086182) ENSSSAG00000040518 ENSSSAG00000115354 dhx32a (ENSSSAG00000011195) bccip (ENSSSAG00000059009) UROS (ENSSSAG00000059167) ENSSSAG00000110206 ENSSSAG00000083296 ENSSSAG00000084335 ENSSSAG00000083481 Atlantic salmon MODERN SPECIES 9 ENSSSAG00000006213 ENSSSAG00000006685 ENSSSAG00000110549 ENSSSAG00000097725 ENSSSAG00000098269 ENSSSAG00000055150 ENSSSAG00000016265 dpysl4 (ENSSSAG00000010177) ##16 ENSSSAG00000121658 BNIP3 (ENSSSAG00000006088) ##19 ppp2r2d (ENSSSAG00000094519) ##21 ENSSSAG00000053940 ENSSSAG00000087856 ENSSSAG00000107020 glrx3 (ENSSSAG00000072030) ebf3a (ENSSSAG00000000165) ##22 ENSSSAG00000092558 ENSSSAG00000101429 ENSSSAG00000115703 PTPRE (ENSSSAG00000046926) CLRN3 (ENSSSAG00000087351) foxi1 (ENSSSAG00000091026) dock1 (ENSSSAG00000119975) ENSSSAG00000082534 INSYN2A (ENSSSAG00000121779) ENSSSAG00000097318 ENSSSAG00000114316 ADAM12 (ENSSSAG00000047017) dhx32a (ENSSSAG00000113403) bccip (ENSSSAG00000015607) UROS (ENSSSAG00000015500) River trout DUPLICATION River trout MODERN SPECIES 9 ENSSTUG00000022954 ENSSTUG00000017101 dpysl4 (ENSSTUG00000016841) ##16 ENSSTUG00000008205 cyp4f3 (ENSSTUG00000005335) ENSSTUG00000005191 dpysl4 (ENSSTUG00000004538) ##16 ENSSTUG00000004120 bnip3 (ENSSTUG00000004068) ##19 ppp2r2d (ENSSTUG00000003573) ##21 ENSSTUG00000003527 ENSSTUG00000003519 ENSSTUG00000003499 glrx3 (ENSSTUG00000003489) ebf3a (ENSSTUG00000003481) ##22 ENSSTUG00000003476 ##22 River trout MODERN SPECIES 9 polr3a (ENSSTUG00000034702) ENSSTUG00000022954 ENSSTUG00000017101 dpysl4 (ENSSTUG00000016841) ##16 ENSSTUG00000008205 cyp4f3 (ENSSTUG00000005335) ENSSTUG00000005191 dpysl4 (ENSSTUG00000004538) ##16 ENSSTUG00000004120 bnip3 (ENSSTUG00000004068) ##19 ppp2r2d (ENSSTUG00000003573) ##21 ENSSTUG00000003527 ENSSTUG00000003519 ENSSTUG00000003499 glrx3 (ENSSTUG00000003489) ebf3a (ENSSTUG00000003481) ##22 ENSSTUG00000003476 ##22 Northern pike MODERN SPECIES 5 QRFPR (ENSELUG00000013954) polr3a (ENSELUG00000014016) ENSELUG00000014094 ENSELUG00000026112 ENSELUG00000033879 ENSELUG00000014122 cyp4f3 (ENSELUG00000014141) ENSELUG00000027491 dpysl4 (ENSELUG00000014210) ##16 ENSELUG00000014277 bnip3 (ENSELUG00000014315) ##19 ppp2r2d (ENSELUG00000014374) ##21 ENSELUG00000014394 ENSELUG00000029968 glrx3 (ENSELUG00000014440) ebf3a (ENSELUG00000014530) ##22 ENSELUG00000032335 PTPRE (ENSELUG00000014622) CLRN3 (ENSELUG00000014661) foxi1 (ENSELUG00000014670) dock1 (ENSELUG00000014802) INSYN2A (ENSELUG00000014690) dock1 (ENSELUG00000027927) ADAM12 (ENSELUG00000014859) FANK1 (ENSELUG00000014950) dhx32a (ENSELUG00000014983) ENSELUG00000015013 bccip (ENSELUG00000015036) uros (ENSELUG00000015075) mmp21 (ENSELUG00000015094) CTBP2 (ENSELUG00000015118) Protacanthopterygii ANCESTRAL SPECIES 85 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.a.f ENSGT00940000156696.A ENSGT01030000234563.b.a.b.a.b.b ENSGT01030000234563.b.a.b.a.a.c.b ENSGT00940000155257.b.b ENSGT00940000155809.p ENSGT00940000153352.B ENSGT00940000161451.a.b ENSGT00390000013415.a.a.b ##19 ENSGT00950000182864.a.a.s.b ##21 ENSGT00950000182859.A.b.eb.b ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00940000156570.b ENSGT00530000063787.B.d.b ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b ENSGT00940000160878.e ENSGT00940000157227.h ENSGT00390000014797.h ENSGT00940000154430.c.b ENSGT00940000158045.b ENSGT00530000063424.a ENSGT00390000013399 ENSGT00530000063371.B.f Salmoninae DUPLICATION Salmoninae ANCESTRAL SPECIES 781 ENSGT00940000155257.b.b.b ENSGT00940000155809.p.a ENSGT00940000153352.B.r ENSGT00940000161451.a.b.b ENSGT00950000182864.a.a.s.b.b ##21 ENSGT00950000182859.A.b.eb.b.a ##22 ENSGT00990000211460 ENSGT00390000009274.d ENSGT00940000156570.b.h ENSGT00530000063787.B.d.b.d Huchen MODERN SPECIES 792 add3b (ENSHHUG00000035980) MXI1 (ENSHHUG00000036350) smndc1 (ENSHHUG00000036356) ADRA2A (ENSHHUG00000036445) ENSHHUG00000036452 ##21 ebf3a (ENSHHUG00000036482) ##22 ENSHHUG00000036504 ENSHHUG00000036509 ptpreb (ENSHHUG00000036538) Salmoninae_a ANCESTRAL SPECIES 16 ENSGT00940000156675.c.a ENSGT00940000165723.b.f ENSGT00940000154704.d.b.z.a.a ENSGT00940000163053.c.a.b ENSGT00950000183126.b.b.d ENSGT00940000155351 ENSGT00940000157732.f.a.f.b ENSGT00940000156696.A.b ENSGT01030000234563.b.a.b.a.b.b.c ENSGT01030000234563.b.a.b.a.a.c.b.b ENSGT00940000155257.b.b.b ENSGT00940000155809.p.a ENSGT00940000153352.B.r ENSGT00940000161451.a.b.b ENSGT00950000182864.a.a.s.b.b ##21 ENSGT00950000182859.A.b.eb.b.a ##22 ENSGT00990000211460 ENSGT00390000009274.d ENSGT00940000156570.b.h ENSGT00530000063787.B.d.b.d ENSGT00940000155495.C.a.b.d ENSGT00940000157227.h.a ENSGT00390000014797.g ENSGT00940000175884 ENSGT00940000154430.c.b.b ENSGT00940000158045.b.b ENSGT00530000063424.a.p ENSGT00390000013399.s ENSGT00530000063371.B.f.c ENSGT00940000162535.c ENSGT00390000004719.a.c Oncorhynchus ANCESTRAL SPECIES 17 ENSGT00940000156675.c.a ENSGT00940000165723.b.f ENSGT00940000154704.d.b.z.a.a ENSGT00940000163053.c.a.b ENSGT00950000183126.b.b.d ENSGT00940000155351 ENSGT00940000157732.f.a.f.b ENSGT00940000156696.A.b ENSGT01030000234563.b.a.b.a.b.b.c ENSGT01030000234563.b.a.b.a.a.c.b.b ENSGT00940000155257.b.b.b ENSGT00940000155809.p.a ENSGT00940000153352.B.r ENSGT00940000161451.a.b.b ENSGT00950000182864.a.a.s.b.b ##21 ENSGT00950000182859.A.b.eb.b.a ##22 ENSGT00990000211460 ENSGT00390000009274.d ENSGT00940000156570.b.h ENSGT00530000063787.B.d.b.d ENSGT00940000155495.C.a.b.d ENSGT00940000157227.h.a ENSGT00390000014797.g ENSGT00940000175884 ENSGT00940000154430.c.b.b ENSGT00940000158045.b.b ENSGT00530000063424.a.p ENSGT00390000013399.s ENSGT00530000063371.B.f.c ENSGT00940000162535.c ENSGT00390000004719.a.c Rainbow trout MODERN SPECIES 15 ENSOMYG00000041155 gsto1 (ENSOMYG00000041164) ENSOMYG00000041177 ENSOMYG00000057461 ENSOMYG00000041197 ENSOMYG00000041211 ENSOMYG00000041226 ADD3 (ENSOMYG00000041276) MXI1 (ENSOMYG00000041329) smndc1 (ENSOMYG00000041334) ENSOMYG00000052062 ENSOMYG00000041340 ENSOMYG00000060239 ENSOMYG00000041345 ##21 ENSOMYG00000068190 ENSOMYG00000041391 ##22 ENSOMYG00000041951 ENSOMYG00000051603 gnrh1 (ENSOMYG00000071433) ENSOMYG00000042237 ENSOMYG00000044779 ENSOMYG00000044847 ENSOMYG00000045488 ENSOMYG00000045549 ENSOMYG00000045559 ctbp2a (ENSOMYG00000045584) ZRANB1 (ENSOMYG00000045704) ENSOMYG00000045707 ENSOMYG00000066217 ABRAXAS2 (ENSOMYG00000045712) EEF1AKMT2 (ENSOMYG00000045721) Oncorhynchus_a ANCESTRAL SPECIES 13 ENSGT00940000156675.c.a ENSGT00940000165723.b.f ENSGT00940000154704.d.b.z.a.a ENSGT00940000163053.c.a.b ENSGT00950000183126.b.b.d ENSGT00940000155351 ENSGT00940000157732.f.a.f.b ENSGT00940000156696.A.b ENSGT01030000234563.b.a.b.a.b.b.c ENSGT01030000234563.b.a.b.a.a.c.b.b ENSGT00940000155257.b.b.b ENSGT00940000155809.p.a ENSGT00940000153352.B.r ENSGT00940000161451.a.b.b ENSGT00950000182864.a.a.s.b.b ##21 ENSGT00950000182859.A.b.eb.b.a ##22 ENSGT00990000211460 ENSGT00390000009274.d ENSGT00940000156570.b.h ENSGT00530000063787.B.d.b.d ENSGT00940000155495.C.a.b.d ENSGT00940000157227.h.a ENSGT00390000014797.g ENSGT00940000175884 ENSGT00940000154430.c.b.b ENSGT00940000158045.b.b ENSGT00530000063424.a.p ENSGT00390000013399.s ENSGT00530000063371.B.f.c ENSGT00940000162535.c ENSGT00390000004719.a.c Coho salmon MODERN SPECIES 2 pcdh15a (ENSOKIG00005032623) ENSOKIG00005032467 prkg1a (ENSOKIG00005032319) ENSOKIG00005032130 ENSOKIG00005046464 ENSOKIG00005046455 gsto2 (ENSOKIG00005046442) SH3PXD2A (ENSOKIG00005046388) ENSOKIG00005046375 ENSOKIG00005046358 ENSOKIG00005045985 add3b (ENSOKIG00005045829) smndc1 (ENSOKIG00005045788) ADRA2A (ENSOKIG00005045779) PPP2R2D (ENSOKIG00005045761) ##21 EBF3 (ENSOKIG00005045654) ##22 ENSOKIG00005045621 gnrh3 (ENSOKIG00005045611) ENSOKIG00005041788 ENSOKIG00005041485 INSYN2A (ENSOKIG00005041471) ENSOKIG00005041395 ADAM12 (ENSOKIG00005039462) DHX32 (ENSOKIG00005038697) tex36 (ENSOKIG00005038674) ENSOKIG00005038397 ZRANB1 (ENSOKIG00005038041) ENSOKIG00005038022 abraxas2 (ENSOKIG00005037994) eef1akmt2 (ENSOKIG00005037966) FAM53B (ENSOKIG00005037952) Chinook salmon MODERN SPECIES pcdh15a (ENSOTSG00005000208) dkk1a (ENSOTSG00005000215) prkg1a (ENSOTSG00005000227) ENSOTSG00005000271 ENSOTSG00005000284 gsto2 (ENSOTSG00005000285) SH3PXD2A (ENSOTSG00005000288) ENSOTSG00005000292 ENSOTSG00005000295 ENSOTSG00005000305 add3b (ENSOTSG00005000666) MXI1 (ENSOTSG00005000676) smndc1 (ENSOTSG00005000677) ADRA2A (ENSOTSG00005000681) PPP2R2D (ENSOTSG00005000684) ##21 ebf3a (ENSOTSG00005000694) ##22 ENSOTSG00005001622 ENSOTSG00005001624 ptpreb (ENSOTSG00005001675) INSYN2A (ENSOTSG00005009289) ADAM12 (ENSOTSG00005009293) DHX32 (ENSOTSG00005011470) ENSOTSG00005011473 tex36 (ENSOTSG00005011475) ctbp2a (ENSOTSG00005011479) ZRANB1 (ENSOTSG00005011482) abraxas2 (ENSOTSG00005011767) eef1akmt2 (ENSOTSG00005011772) FAM53B (ENSOTSG00005011774) nkx1.2la (ENSOTSG00005011777) CHST15 (ENSOTSG00005011780) Salmo ANCESTRAL SPECIES 23 ENSGT00940000156675.c.a ENSGT00940000165723.b.f ENSGT00940000154704.d.b.z.a.a ENSGT00940000163053.c.a.b ENSGT00950000183126.b.b.d ENSGT00940000155351 ENSGT00940000157732.f.a.f.b ENSGT00940000156696.A.b ENSGT01030000234563.b.a.b.a.b.b.c ENSGT01030000234563.b.a.b.a.a.c.b.b ENSGT00940000155257.b.b.b ENSGT00940000155809.p.a ENSGT00940000153352.B.r ENSGT00940000161451.a.b.b ENSGT00950000182864.a.a.s.b.b ##21 ENSGT00950000182859.A.b.eb.b.a ##22 ENSGT00990000211460 ENSGT00390000009274.d ENSGT00940000156570.b.h ENSGT00530000063787.B.d.b.d ENSGT00940000155495.C.a.b.d ENSGT00940000157227.h.a ENSGT00940000175884 ENSGT00940000154430.c.b.b ENSGT00940000158045.b.b ENSGT00530000063424.a.p ENSGT00390000013399.s ENSGT00530000063371.B.f.c ENSGT00940000162535.c ENSGT00390000004719.a.c ENSGT00950000183001.a.a.d.b.f River trout MODERN SPECIES 9 prkg1a (ENSSTUG00000036738) ENSSTUG00000036883 ENSSTUG00000036954 gsto2 (ENSSTUG00000036974) SH3PXD2A (ENSSTUG00000037012) ENSSTUG00000037276 ENSSTUG00000037280 ENSSTUG00000037281 ENSSTUG00000037285 ENSSTUG00000037295 add3b (ENSSTUG00000037470) MXI1 (ENSSTUG00000038544) smndc1 (ENSSTUG00000038554) ADRA2A (ENSSTUG00000038577) ENSSTUG00000038588 ##21 ebf3a (ENSSTUG00000038637) ##22 ENSSTUG00000038953 ENSSTUG00000038962 ptpreb (ENSSTUG00000039008) ENSSTUG00000040886 ##17 INSYN2A (ENSSTUG00000040892) ADAM12 (ENSSTUG00000041029) DHX32 (ENSSTUG00000043858) tex36 (ENSSTUG00000043934) ctbp2a (ENSSTUG00000043961) ZRANB1 (ENSSTUG00000044329) abraxas2 (ENSSTUG00000044532) eef1akmt2 (ENSSTUG00000044570) FAM53B (ENSSTUG00000044580) nkx1.2la (ENSSTUG00000044582) CHST15 (ENSSTUG00000044593) Atlantic salmon MODERN SPECIES ENSSSAG00000111092 prkg1a (ENSSSAG00000075912) ENSSSAG00000076313 ENSSSAG00000105461 tnr6 (ENSSSAG00000076338) ENSSSAG00000076348 ENSSSAG00000110896 ENSSSAG00000076392 ENSSSAG00000076406 ENSSSAG00000076859 ADD3 (ENSSSAG00000077178) MXI1 (ENSSSAG00000102877) smndc1 (ENSSSAG00000078055) ENSSSAG00000078071 ENSSSAG00000079931 ##21 ENSSSAG00000078355 ##22 ENSSSAG00000078927 ENSSSAG00000078988 ENSSSAG00000115450 ENSSSAG00000079832 ENSSSAG00000079835 ENSSSAG00000079858 dhx32 (ENSSSAG00000080125) ENSSSAG00000080152 CTBP2 (ENSSSAG00000113218) ZRANB1 (ENSSSAG00000000110) ABRAXAS2 (ENSSSAG00000080261) EEF1AKMT2 (ENSSSAG00000080269) ENSSSAG00000092343 fam53b (ENSSSAG00000080274) nkx1-2 (ENSSSAG00000080276) Salmoninae ANCESTRAL SPECIES 74 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.a.f.a ENSGT00940000156696.A.a ENSGT01030000234563.b.a.b.a.b.b.d ENSGT01030000234563.b.a.b.a.a.c.b.a ENSGT00940000155257.b.b.a ENSGT00940000155809.p.b ENSGT00940000153352.B.q ENSGT00940000161451.a.b.a ENSGT00390000013415.a.a.b ##19 ENSGT00950000182864.a.a.s.b.a ##21 ENSGT00950000182859.A.b.eb.b.b ##22 ENSGT00390000015799 ENSGT00390000009274.c ENSGT00940000156570.b.g ENSGT00530000063787.B.d.b.c ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b.c ENSGT00940000160878.e ENSGT00940000157227.h.b ENSGT00390000014797.h ENSGT00940000154430.c.b.a ENSGT00940000158045.b.a ENSGT00530000063424.a.o ENSGT00390000013399.t ENSGT00530000063371.B.f.d Salmoninae_a ANCESTRAL SPECIES 11 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.a.f.a ENSGT00940000156696.A.a ENSGT01030000234563.b.a.b.a.b.b.d ENSGT01030000234563.b.a.b.a.a.c.b.a ENSGT00940000155257.b.b.a ENSGT00940000155809.p.b ENSGT00940000153352.B.q ENSGT00940000161451.a.b.a ENSGT00390000013415.a.a.b ##19 ENSGT00950000182864.a.a.s.b.a ##21 ENSGT00950000182859.A.b.eb.b.b ##22 ENSGT00390000015799 ENSGT00390000009274.c ENSGT00940000156570.b.g ENSGT00390000006939.i.b.b ENSGT00530000063787.B.d.b.c ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b.c ENSGT00940000160878.e ENSGT00940000157227.h.b ENSGT00390000014797.h ENSGT00940000154430.c.b.a ENSGT00940000158045.b.a ENSGT00530000063424.a.o ENSGT00390000013399.t Oncorhynchus ANCESTRAL SPECIES 2 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.a.f.a ENSGT00940000156696.A.a ENSGT01030000234563.b.a.b.a.b.b.d ENSGT01030000234563.b.a.b.a.a.c.b.a ENSGT00940000155257.b.b.a ENSGT00940000155809.p.b ENSGT00940000153352.B.q ENSGT00940000161451.a.b.a ENSGT00390000013415.a.a.b ##19 ENSGT00950000182864.a.a.s.b.a ##21 ENSGT00950000182859.A.b.eb.b.b ##22 ENSGT00390000015799 ENSGT00390000009274.c ENSGT00940000156570.b.g ENSGT00390000006939.i.b.b ENSGT00530000063787.B.d.b.c ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b.c ENSGT00940000160878.e ENSGT00940000157227.h.b ENSGT00390000014797.h ENSGT00940000154430.c.b.a ENSGT00940000158045.b.a ENSGT00530000063424.a.o ENSGT00390000013399.t Oncorhynchus_a ANCESTRAL SPECIES 1 ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000177016 ENSGT00940000168136 ENSGT00940000156184.b ENSGT00940000157732.f.a.f.a ENSGT00940000156696.A.a ENSGT01030000234563.b.a.b.a.b.b.d ENSGT01030000234563.b.a.b.a.a.c.b.a ENSGT00940000155257.b.b.a ENSGT00940000155809.p.b ENSGT00940000153352.B.q ENSGT00940000161451.a.b.a ENSGT00390000013415.a.a.b ##19 ENSGT00950000182864.a.a.s.b.a ##21 ENSGT00950000182859.A.b.eb.b.b ##22 ENSGT00390000015799 ENSGT00390000009274.c ENSGT00940000156570.b.g ENSGT00530000063787.B.d.b.c ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b.c ENSGT00940000160878.e ENSGT00940000157227.h.b ENSGT00390000014797.h ENSGT00940000154430.c.b.a ENSGT00940000158045.b.a ENSGT00530000063424.a.o ENSGT00390000013399.t ENSGT00530000063371.B.f.d Coho salmon MODERN SPECIES 24 ENSOKIG00005048277 CFAP43 (ENSOKIG00005048279) sfr1 (ENSOKIG00005048290) ENSOKIG00005048297 slka (ENSOKIG00005048329) SH3PXD2A (ENSOKIG00005048475) ENSOKIG00005048509 ENSOKIG00005048544 ENSOKIG00005048662 ADD3 (ENSOKIG00005048783) MXI1 (ENSOKIG00005049130) smndc1 (ENSOKIG00005049134) ADRA2A (ENSOKIG00005049141) ENSOKIG00005049148 ##19 PPP2R2D (ENSOKIG00005049155) ##21 ebf3a (ENSOKIG00005049203) ##22 mgmt (ENSOKIG00005049460) ENSOKIG00005049478 ptpreb (ENSOKIG00005049523) INSYN2A (ENSOKIG00005049598) ENSOKIG00005049600 ENSOKIG00005049602 ADAM12 (ENSOKIG00005049628) FANK1 (ENSOKIG00005028623) DHX32 (ENSOKIG00005028676) EDRF1 (ENSOKIG00005028763) ENSOKIG00005029252 zranb1b (ENSOKIG00005029861) ABRAXAS2 (ENSOKIG00005030039) ENSOKIG00005030394 FAM53B (ENSOKIG00005030432) Chinook salmon MODERN SPECIES 30 CFAP43 (ENSOTSG00005027443) sfr1 (ENSOTSG00005027447) ENSOTSG00005027448 ENSOTSG00005027449 slka (ENSOTSG00005027459) SH3PXD2A (ENSOTSG00005008103) ENSOTSG00005008104 ENSOTSG00005008106 ENSOTSG00005008107 add3b (ENSOTSG00005008116) MXI1 (ENSOTSG00005010269) smndc1 (ENSOTSG00005010270) ADRA2A (ENSOTSG00005010271) BNIP3 (ENSOTSG00005010272) ##19 PPP2R2D (ENSOTSG00005010273) ##21 ebf3a (ENSOTSG00005010274) ##22 mgmt (ENSOTSG00005010708) ptpreb (ENSOTSG00005010717) INSYN2A (ENSOTSG00005014742) ENSOTSG00005014743 ENSOTSG00005014744 ADAM12 (ENSOTSG00005014752) FANK1 (ENSOTSG00005014756) DHX32 (ENSOTSG00005014759) EDRF1 (ENSOTSG00005014797) CTBP2 (ENSOTSG00005015059) zranb1b (ENSOTSG00005015103) abraxas2 (ENSOTSG00005015118) eef1akmt2 (ENSOTSG00005015121) FAM53B (ENSOTSG00005015122) nkx1.2la (ENSOTSG00005015123) Rainbow trout MODERN SPECIES CFAP43 (ENSOMYG00000065286) SFR1 (ENSOMYG00000006047) ENSOMYG00000006268 SLK (ENSOMYG00000008818) SH3PXD2A (ENSOMYG00000014571) ENSOMYG00000014740 ENSOMYG00000014856 ENSOMYG00000015268 ADD3 (ENSOMYG00000016648) MXI1 (ENSOMYG00000019345) smndc1 (ENSOMYG00000019347) ENSOMYG00000077705 ENSOMYG00000058813 bnip3 (ENSOMYG00000019362) ##19 ENSOMYG00000019439 ##21 ENSOMYG00000019581 ##22 ENSOMYG00000019708 ENSOMYG00000041955 ENSOMYG00000019968 ENSOMYG00000024208 INSYN2A (ENSOMYG00000024213) ENSOMYG00000024224 ENSOMYG00000071507 ENSOMYG00000024261 ENSOMYG00000024296 ADAM12 (ENSOMYG00000024666) FANK1 (ENSOMYG00000026035) DHX32 (ENSOMYG00000026057) EDRF1 (ENSOMYG00000026199) CTBP2 (ENSOMYG00000026523) zranb1b (ENSOMYG00000027010) Salmo ANCESTRAL SPECIES 29 ENSGT01050000244827.D.b.b.a ENSGT00950000182946.lb.b.k.b.b.b ENSGT00530000064714 ENSGT00390000018550 ENSGT00940000156184.b ENSGT00940000157732.f.a.f.a ENSGT00940000156696.A.a ENSGT01030000234563.b.a.b.a.b.b.d ENSGT01030000234563.b.a.b.a.a.c.b.a ENSGT00940000155257.b.b.a ENSGT00940000155809.p.b ENSGT00940000153352.B.q ENSGT00940000161451.a.b.a ENSGT00390000013415.a.a.b ##19 ENSGT00950000182864.a.a.s.b.a ##21 ENSGT00950000182859.A.b.eb.b.b ##22 ENSGT00390000015799 ENSGT00390000009274.c ENSGT00940000156570.b.g ENSGT00390000006939.i.b.b ENSGT00530000063787.B.d.b.c ENSGT00940000164380.b ENSGT00940000153123.C.a ENSGT00940000155495.C.a.b.c ENSGT00940000160878.e ENSGT00940000157227.h.b ENSGT00390000014797.h ENSGT00940000154430.c.b.a ENSGT00940000158045.b.a ENSGT00530000063424.a.o ENSGT00990000213923 River trout MODERN SPECIES 35 CFAP43 (ENSSTUG00000018860) sfr1 (ENSSTUG00000018849) ENSSTUG00000018724 slka (ENSSTUG00000018393) SH3PXD2A (ENSSTUG00000018345) ENSSTUG00000018337 ENSSTUG00000018333 ENSSTUG00000018293 ENSSTUG00000018271 add3b (ENSSTUG00000017339) ENSSTUG00000017304 smndc1 (ENSSTUG00000017291) ADRA2A (ENSSTUG00000017289) ENSSTUG00000017274 ##19 ENSSTUG00000017239 ##21 ebf3a (ENSSTUG00000017088) ##22 MGMT (ENSSTUG00000017064) gnrh3 (ENSSTUG00000017052) ptpreb (ENSSTUG00000015316) DCAF7 (ENSSTUG00000015241) INSYN2A (ENSSTUG00000015229) ENSSTUG00000015220 ENSSTUG00000015196 ADAM12 (ENSSTUG00000013638) FANK1 (ENSSTUG00000013457) DHX32 (ENSSTUG00000013348) EDRF1 (ENSSTUG00000012509) ctbp2a (ENSSTUG00000012157) zranb1b (ENSSTUG00000011961) abraxas2 (ENSSTUG00000011938) FAM53B (ENSSTUG00000011932) Atlantic salmon MODERN SPECIES 9 cfap43 (ENSSSAG00000078942) SFR1 (ENSSSAG00000094448) col17a1 (ENSSSAG00000078949) slk (ENSSSAG00000078992) sh3pxd2a (ENSSSAG00000079264) ENSSSAG00000091704 ENSSSAG00000079323 ENSSSAG00000079462 add3 (ENSSSAG00000079674) MXI1 (ENSSSAG00000097086) smndc1 (ENSSSAG00000101214) ENSSSAG00000089056 ENSSSAG00000079895 ENSSSAG00000079901 ##19 ENSSSAG00000084612 ##21 ENSSSAG00000080028 ##22 ENSSSAG00000085044 ENSSSAG00000080132 gnrh3 (ENSSSAG00000080135) ptpre (ENSSSAG00000080155) ENSSSAG00000080320 fam196a (ENSSSAG00000106239) ENSSSAG00000080323 cssa18h10orf90 (ENSSSAG00000039977) ADAM12 (ENSSSAG00000040059) FANK1 (ENSSSAG00000040835) DHX32 (ENSSSAG00000041385) EDRF1 (ENSSSAG00000041556) CTBP2 (ENSSSAG00000080162) ZRANB1 (ENSSSAG00000045442) ABRAXAS2 (ENSSSAG00000045561) Huchen MODERN SPECIES 344 ENSHHUG00000043967 add3b (ENSHHUG00000043987) MXI1 (ENSHHUG00000044189) smndc1 (ENSHHUG00000044194) ADRA2A (ENSHHUG00000044227) ENSHHUG00000044229 ##19 ENSHHUG00000044233 ##21 ebf3a (ENSHHUG00000044249) ##22 mgmt (ENSHHUG00000044265) ENSHHUG00000044272 ENSHHUG00000044273 ptpreb (ENSHHUG00000044282) INSYN2A (ENSHHUG00000044449) ENSHHUG00000044456 ENSHHUG00000044467 Northern pike MODERN SPECIES 5 sgms1a (ENSELUG00000007615) minpp1a (ENSELUG00000007637) papss2a (ENSELUG00000007595) ENSELUG00000007546 itprip (ENSELUG00000007476) CFAP43 (ENSELUG00000007460) sfr1 (ENSELUG00000026371) slka (ENSELUG00000007260) SH3PXD2A (ENSELUG00000007139) ENSELUG00000007095 ENSELUG00000007063 add3b (ENSELUG00000007003) MXI1 (ENSELUG00000000233) smndc1 (ENSELUG00000025724) PPP2R2D (ENSELUG00000006894) ##21 ebf3a (ENSELUG00000001507) ##22 mgmt (ENSELUG00000006809) ENSELUG00000028686 gnrh3 (ENSELUG00000006783) INSYN2A (ENSELUG00000006780) ENSELUG00000001324 ENSELUG00000006721 ADAM12 (ENSELUG00000006707) FANK1 (ENSELUG00000006677) DHX32 (ENSELUG00000006659) EDRF1 (ENSELUG00000006602) ctbp2a (ENSELUG00000006494) zranb1b (ENSELUG00000006442) abraxas2 (ENSELUG00000006421) eef1akmt2 (ENSELUG00000000203) FAM53B (ENSELUG00000006379) Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182859.A.b.fb ##22 Salmoninae ANCESTRAL SPECIES 1634 ENSGT00550000075030.b ENSGT00950000182859.A.b.fb ##22 Huchen MODERN SPECIES 5182 glrx3 (ENSHHUG00000022958) ENSHHUG00000022965 ##22 Bilateria ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Ecdysozoa ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Fruitfly MODERN SPECIES 17 Cyp6a23 (FBgn0033978) Cyp6a17 (FBgn0015714) Cyp6a22 (FBgn0013773) Pcf11 (FBgn0264962) U3-55K (FBgn0053505) CG33506 (FBgn0053506) HPS1 (FBgn0033973) Ciao1 (FBgn0033972) Ercc1 (FBgn0028434) SMC2 (FBgn0027783) CG10209 (FBgn0033971) NaPi-T (FBgn0016684) CG10205 (FBgn0033970) Pgm2b (FBgn0033969) hui (FBgn0033968) kn (FBgn0001319) ##22 BEAF-32 (FBgn0015602) Spred (FBgn0020767) CG12857 (FBgn0033963) Trs31 (FBgn0266723) ND-B15 (FBgn0033961) CG10151 (FBgn0033960) ave (FBgn0050476) Rpn6 (FBgn0028689) AttB (FBgn0041581) AttA (FBgn0012042) Dro (FBgn0010388) jef (FBgn0033958) CG43428 (FBgn0263376) CG30480 (FBgn0050480) CG30479 (FBgn0050479) Caenorhabditis elegans MODERN SPECIES 6 sox-3 (WBGene00004950) hch-1 (WBGene00001828) F40E10.5 (WBGene00009573) F40E10.6 (WBGene00009574) atrn-1 (WBGene00006432) F33C8.2 (WBGene00009357) tsp-8 (WBGene00006634) F33C8.4 (WBGene00009358) C05G5.1 (WBGene00007347) C05G5.7 (WBGene00050939) C05G5.2 (WBGene00007348) C05G5.3 (WBGene00007349) sucl-1 (WBGene00007350) C05G5.5 (WBGene00007351) Y16B4A.2 (WBGene00012445) unc-3 (WBGene00006743) ##22 tatn-1 (WBGene00009628) sprr-2 (WBGene00009629) F42D1.4 (WBGene00044139) atf-4 (WBGene00000221) T04C10.11 (WBGene00303075) T04C10.3 (WBGene00011426) epn-1 (WBGene00001329) mbk-1 (WBGene00003149) dpf-2 (WBGene00001055) egrh-1 (WBGene00007772) acd-3 (WBGene00007775) C27C12.1 (WBGene00007771) C27C12.4 (WBGene00007774) dmd-4 (WBGene00007776) C27C12.3 (WBGene00007773) Chordata ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Ciona ANCESTRAL SPECIES 226 ENSGT00940000156954.t ENSGT00390000017765 ENSGT00950000182859.B ##22 ENSGT00390000001650 ENSGT00910000144159.A Ciona intestinalis MODERN SPECIES 103 ENSCING00000018165 ENSCING00000003205 ENSCING00000016397 uglcat1 (ENSCING00000003206) ENSCING00000003208 ENSCING00000003209 ##22 ENSCING00000003217 ENSCING00000003219 ENSCING00000024390 ENSCING00000023680 ENSCING00000022755 ENSCING00000016299 ENSCING00000016230 ENSCING00000015454 ENSCING00000018047 ENSCING00000003187 ENSCING00000016289 ENSCING00000016282 ENSCING00000015588 ENSCING00000022804 ENSCING00000005141 Ciona savignyi MODERN SPECIES 244 ENSCSAVG00000000367 ENSCSAVG00000000370 ENSCSAVG00000000378 ENSCSAVG00000000381 ENSCSAVG00000000385 ENSCSAVG00000000392 ENSCSAVG00000000412 ENSCSAVG00000000436 ENSCSAVG00000000451 ENSCSAVG00000000452 ENSCSAVG00000000453 ENSCSAVG00000000454 ENSCSAVG00000000455 ENSCSAVG00000000456 ENSCSAVG00000000457 ENSCSAVG00000000458 ##22 ENSCSAVG00000000463 ENSCSAVG00000000465 ENSCSAVG00000000466 ENSCSAVG00000000468 ENSCSAVG00000000470 ENSCSAVG00000000471 ENSCSAVG00000000472 ENSCSAVG00000000476 ENSCSAVG00000000477 ENSCSAVG00000000478 ENSCSAVG00000000479 ENSCSAVG00000000480 ENSCSAVG00000000483 ENSCSAVG00000000487 ENSCSAVG00000000488 Vertebrata ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Cyclostomata ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Hagfish MODERN SPECIES 845 ENSEBUG00000013517 dmc1 (ENSEBUG00000008577) ENSEBUG00000013645 ENSEBUG00000010995 rpsa (ENSEBUG00000008837) ENSEBUG00000016099 ube2s (ENSEBUG00000001561) ENSEBUG00000010120 ENSEBUG00000008003 stub1 (ENSEBUG00000016951) phf5a (ENSEBUG00000009125) ENSEBUG00000006767 ENSEBUG00000000518 ENSEBUG00000007159 ENSEBUG00000000914 ENSEBUG00000000345 ##22 ENSEBUG00000001184 Gnathostomata ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Elephant shark MODERN SPECIES 3059 ENSCMIG00000004439 ##22 Euteleostomi ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Sarcopterygii ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Tetrapoda ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Amniota ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Sauria ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Lepidosauria ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Episquamata ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Toxicofera ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Lizard MODERN SPECIES 1674 ENSACAG00000007938 ##22 Actinopterygii ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Neopterygii ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Osteoglossocephalai ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Clupeocephala ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Euteleosteomorpha ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Acanthomorphata ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Euacanthomorphacea ANCESTRAL SPECIES 173 ENSGT00940000153713.A ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 Pinecone sodierfish MODERN SPECIES 10 ENSMMDG00005018007 ENSMMDG00005018703 ENSMMDG00005018710 dnajc9 (ENSMMDG00005018724) nudt13 (ENSMMDG00005018744) ENSMMDG00005018780 ENSMMDG00005018821 rpp30 (ENSMMDG00005018838) ENSMMDG00005018872 ENSMMDG00005018892 ENSMMDG00005018910 ENSMMDG00005018919 ENSMMDG00005018924 ENSMMDG00005018941 SYDE1 (ENSMMDG00005018977) ENSMMDG00005019016 ##22 ENSMMDG00005019033 ENSMMDG00005019064 ENSMMDG00005019078 dpysl4 (ENSMMDG00005019118) ##16 ENSMMDG00005002530 ENSMMDG00005003714 Percomorphaceae ANCESTRAL SPECIES 88 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00390000005232 Tiger tail seahorse DUPLICATION Tiger tail seahorse MODERN SPECIES 360 rab11fip3 (ENSHCOG00000004093) telo2 (ENSHCOG00000004377) ENSHCOG00000004427 tmem204 (ENSHCOG00000004436) IFT140 (ENSHCOG00000004459) metrn (ENSHCOG00000004471) ENSHCOG00000004483 stub1 (ENSHCOG00000004497) crp2 (ENSHCOG00000004509) PRR35 (ENSHCOG00000004527) dpysl4 (ENSHCOG00000004557) ##16 ENSHCOG00000004583 ENSHCOG00000004600 SYDE1 (ENSHCOG00000004666) ENSHCOG00000004688 ##22 ENSHCOG00000004746 ##22 ENSHCOG00000004763 ENSHCOG00000004777 noc3l (ENSHCOG00000004797) ENSHCOG00000004807 acta2 (ENSHCOG00000004818) ENSHCOG00000004901 lipf (ENSHCOG00000004913) bbs1 (ENSHCOG00000004920) ENSHCOG00000004928 RNLS (ENSHCOG00000005002) ptena (ENSHCOG00000005028) atad1b (ENSHCOG00000005047) Tiger tail seahorse MODERN SPECIES 360 decr2 (ENSHCOG00000004078) rab11fip3 (ENSHCOG00000004093) telo2 (ENSHCOG00000004377) ENSHCOG00000004427 tmem204 (ENSHCOG00000004436) IFT140 (ENSHCOG00000004459) metrn (ENSHCOG00000004471) ENSHCOG00000004483 stub1 (ENSHCOG00000004497) crp2 (ENSHCOG00000004509) PRR35 (ENSHCOG00000004527) dpysl4 (ENSHCOG00000004557) ##16 ENSHCOG00000004583 ENSHCOG00000004600 SYDE1 (ENSHCOG00000004666) ENSHCOG00000004688 ##22 ENSHCOG00000004746 ##22 ENSHCOG00000004763 ENSHCOG00000004777 noc3l (ENSHCOG00000004797) ENSHCOG00000004807 acta2 (ENSHCOG00000004818) ENSHCOG00000004901 lipf (ENSHCOG00000004913) bbs1 (ENSHCOG00000004920) ENSHCOG00000004928 RNLS (ENSHCOG00000005002) ptena (ENSHCOG00000005028) atad1b (ENSHCOG00000005047) Percomorphaceae_B ANCESTRAL SPECIES 23 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b Percomorphaceae_C ANCESTRAL SPECIES 14 ENSGT00940000153956.a.a ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a Percomorphaceae_D ANCESTRAL SPECIES 13 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a Anabantaria ANCESTRAL SPECIES 31 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g Anabantoidei ANCESTRAL SPECIES 10 ENSGT00940000153713.A ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00950000182946.lb.a.j ENSGT00390000008540 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00390000005232 ENSGT00940000155989.d Climbing perch MODERN SPECIES 10 ENSATEG00000015406 ENSATEG00000015394 ENSATEG00000015357 ##16 ENSATEG00000015338 ENSATEG00000015317 ENSATEG00000015281 ##22 ENSATEG00000015263 ENSATEG00000015246 ENSATEG00000028569 ENSATEG00000015162 ENSATEG00000015138 ENSATEG00000014965 ENSATEG00000014932 ENSATEG00000014904 ch25h (ENSATEG00000029885) ENSATEG00000014889 ENSATEG00000029405 acta2 (ENSATEG00000029504) STAMBPL1 (ENSATEG00000014833) lipf (ENSATEG00000014782) rnls (ENSATEG00000014761) Siamese fighting fish MODERN SPECIES 9 ENSBSLG00000024913 ENSBSLG00000024899 dpysl4 (ENSBSLG00000023369) ##16 ENSBSLG00000023267 SYDE1 (ENSBSLG00000023242) ENSBSLG00000023044 ##22 nudt13 (ENSBSLG00000022985) noc3l (ENSBSLG00000022854) ENSBSLG00000022816 ch25h (ENSBSLG00000022799) acta2 (ENSBSLG00000022501) STAMBPL1 (ENSBSLG00000022475) lipf (ENSBSLG00000021967) rnls (ENSBSLG00000021895) ptena (ENSBSLG00000021820) atad1b (ENSBSLG00000021734) minpp1b (ENSBSLG00000021574) bbs1 (ENSBSLG00000021559) FAM13C (ENSBSLG00000021540) asah2 (ENSBSLG00000021504) mfap4.4 (ENSBSLG00000021310) Zig-zag eel MODERN SPECIES 10 ENSMAMG00000010648 minpp1b (ENSMAMG00000010679) atad1b (ENSMAMG00000010688) ENSMAMG00000010711 rnls (ENSMAMG00000010730) lipf (ENSMAMG00000010737) STAMBPL1 (ENSMAMG00000010743) acta2 (ENSMAMG00000010787) ch25h (ENSMAMG00000024602) ifit10 (ENSMAMG00000010833) ENSMAMG00000010850 ENSMAMG00000010887 ENSMAMG00000010902 ENSMAMG00000010916 ENSMAMG00000025782 ENSMAMG00000010944 ##22 ENSMAMG00000026668 ENSMAMG00000010994 ENSMAMG00000011002 ENSMAMG00000027066 ##16 ENSMAMG00000011071 Carangaria ANCESTRAL SPECIES 13 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a Carangaria_A ANCESTRAL SPECIES 75 ENSGT00940000160593 ENSGT00940000153713.A ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a Seriola ANCESTRAL SPECIES 1 ENSGT00940000160593 ENSGT00940000153713.A ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154148.b ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b Greater amberjack MODERN SPECIES 27 ENSSDUG00000015331 ENSSDUG00000015276 dpysl4 (ENSSDUG00000015227) ##16 ENSSDUG00000015200 ankrd1b (ENSSDUG00000015181) ENSSDUG00000015173 SYDE1 (ENSSDUG00000015154) ENSSDUG00000015123 ##22 rpp30 (ENSSDUG00000015086) dnajc9 (ENSSDUG00000015037) nudt13 (ENSSDUG00000015025) ENSSDUG00000015013 ENSSDUG00000014984 noc3l (ENSSDUG00000014905) ENSSDUG00000014880 ENSSDUG00000014866 ch25h (ENSSDUG00000014857) ACTA2 (ENSSDUG00000014813) STAMBPL1 (ENSSDUG00000014726) ankrd22 (ENSSDUG00000014698) lipf (ENSSDUG00000014662) rnls (ENSSDUG00000014654) ENSSDUG00000014625 Yellowtail amberjack MODERN SPECIES 2812 ENSSLDG00000021170 ENSSLDG00000021187 ##22 ENSSLDG00000021224 rpp30 (ENSSLDG00000021234) dnajc9 (ENSSLDG00000021255) nudt13 (ENSSLDG00000021265) ENSSLDG00000021278 ENSSLDG00000021303 noc3l (ENSSLDG00000021439) ENSSLDG00000021570 ch25h (ENSSLDG00000021761) Barramundi perch MODERN SPECIES 494 ENSLCAG00010015532 dpysl4 (ENSLCAG00010015809) ##16 ENSLCAG00010017101 ENSLCAG00010017115 ENSLCAG00010017117 SYDE1 (ENSLCAG00010017121) ENSLCAG00010017134 ##22 ENSLCAG00010017145 ENSLCAG00010017146 rpp30 (ENSLCAG00010017149) Pleuronectoidei ANCESTRAL SPECIES 6 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00390000008540 ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00390000015484.i ENSGT00390000005232 Tongue sole MODERN SPECIES 18 lipf (ENSCSEG00000001915) ankrd22 (ENSCSEG00000001911) STAMBPL1 (ENSCSEG00000001905) ENSCSEG00000001899 ENSCSEG00000001888 ENSCSEG00000001885 arg1 (ENSCSEG00000001881) OXER1 (ENSCSEG00000001870) ENSCSEG00000001857 cox11 (ENSCSEG00000001852) dpysl4 (ENSCSEG00000001843) ##16 ENSCSEG00000001814 ENSCSEG00000001809 ENSCSEG00000001807 SYDE1 (ENSCSEG00000001799) ENSCSEG00000001786 ##22 rpp30 (ENSCSEG00000001779) nudt13 (ENSCSEG00000001773) ENSCSEG00000001771 ENSCSEG00000001767 ENSCSEG00000001748 tob1b (ENSCSEG00000001742) WFIKKN2 (ENSCSEG00000001741) ENSCSEG00000001729 ENSCSEG00000001573 sult2st2 (ENSCSEG00000001558) ENSCSEG00000001547 bsk146 (ENSCSEG00000001543) ENSCSEG00000001540 dhrs7cb (ENSCSEG00000001536) ENSCSEG00000001489 Turbot MODERN SPECIES 9 ENSSMAG00000012835 ENSSMAG00000012791 ##16 ENSSMAG00000012448 ENSSMAG00000012407 ENSSMAG00000024228 ##22 ENSSMAG00000013854 ENSSMAG00000013841 ENSSMAG00000013828 ENSSMAG00000013795 ch25h (ENSSMAG00000013762) STAMBPL1 (ENSSMAG00000013734) ankrd22 (ENSSMAG00000013680) lipf (ENSSMAG00000013658) rnls (ENSSMAG00000013648) PTEN (ENSSMAG00000013632) atad1b (ENSSMAG00000013565) minpp1b (ENSSMAG00000013616) ENSSMAG00000013501 ENSSMAG00000013476 ENSSMAG00000035413 Eupercaria ANCESTRAL SPECIES 10 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00940000154335.b ENSGT00550000074823.b.a Tetraodontidae ANCESTRAL SPECIES 119 ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00390000008540 ENSGT00940000154148.b ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00940000154610.e.a ENSGT00940000153713.A Fugu MODERN SPECIES ENSTRUG00000024355 SYDE1 (ENSTRUG00000027971) ENSTRUG00000026702 ENSTRUG00000032599 ##22 ENSTRUG00000028457 nudt13 (ENSTRUG00000029716) ENSTRUG00000027409 ENSTRUG00000028148 rpp30 (ENSTRUG00000030466) ENSTRUG00000019501 ENSTRUG00000024717 ENSTRUG00000024073 noc3l (ENSTRUG00000003582) ACTA2 (ENSTRUG00000000885) STAMBPL1 (ENSTRUG00000031314) DHX8 (ENSTRUG00000002454) ENSTRUG00000026288 ENSTRUG00000028079 ENSTRUG00000033168 Tetraodon MODERN SPECIES 26 ENSTNIG00000001173 ssr3 (ENSTNIG00000019580) ENSTNIG00000019461 rpl7l1 (ENSTNIG00000019645) ENSTNIG00000001738 ENSTNIG00000019591 ENSTNIG00000009969 myo1cb (ENSTNIG00000019590) ENSTNIG00000019807 rgs16 (ENSTNIG00000019494) ENSTNIG00000001823 ENSTNIG00000019464 LTO1 (ENSTNIG00000019843) ENSTNIG00000001876 zgc:153867 (ENSTNIG00000019453) ENSTNIG00000017064 ##22 ENSTNIG00000003600 ENSTNIG00000019787 ENSTNIG00000019522 ENSTNIG00000019697 ENSTNIG00000019661 ENSTNIG00000019839 ENSTNIG00000019797 polr2g (ENSTNIG00000019445) ENSTNIG00000001881 ENSTNIG00000019690 ENSTNIG00000019583 cldn26 (ENSTNIG00000019659) ENSTNIG00000019671 Eupecaria_A ANCESTRAL SPECIES 22 ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00940000154335.b ENSGT00550000074823.b.a Ballan wrasse MODERN SPECIES 675 ENSLBEG00000011316 dpysl4 (ENSLBEG00000011252) ##16 ENSLBEG00000011163 ENSLBEG00000011123 SYDE1 (ENSLBEG00000011087) ENSLBEG00000011041 ##22 Eupecaria_B ANCESTRAL SPECIES 22 ENSGT00940000155830.e.a ENSGT00390000014563.a.a.a ENSGT00940000158678 ENSGT00940000154704.d.a ENSGT00950000183033.a.a.c.b ENSGT00390000015792 ENSGT00940000154615.i.a.a.c.b ENSGT00940000156416.c ENSGT00390000015484.i ENSGT00390000005232 ENSGT00940000155989.d ENSGT00940000156169.a.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g Eupecaria_C ANCESTRAL SPECIES 51 ENSGT00390000014563.a.a.a ENSGT00940000158678 ENSGT00940000154704.d.a ENSGT00950000183033.a.a.c.b ENSGT00390000015792 ENSGT00940000154615.i.a.a.c.b.h.a ENSGT00940000156416.c ENSGT00390000015484.i ENSGT00390000005232 ENSGT00940000155989.d ENSGT00940000156169.a.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a ENSGT00390000018409.g Gilthead seabream MODERN SPECIES 65 ENSSAUG00010018619 ##22 ENSSAUG00010018623 Eupercaria_incertae_sedis ANCESTRAL SPECIES 61 ENSGT00390000014563.a.a.a ENSGT00940000158678 ENSGT00940000154704.d.a ENSGT00950000183033.a.a.c.b ENSGT00390000015792 ENSGT00940000154615.i.a.a.c.b.h.a ENSGT00390000015484.i ENSGT00390000005232 ENSGT00940000155989.d ENSGT00940000156169.a.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000156410.g ENSGT00390000008540 ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a ENSGT00390000018409.g European seabass MODERN SPECIES 12 ENSDLAG00005028838 ENSDLAG00005029275 ENSDLAG00005027134 ENSDLAG00005003699 ENSDLAG00005032063 ENSDLAG00005031510 ENSDLAG00005014413 ENSDLAG00005004578 ENSDLAG00005017386 ENSDLAG00005026882 ENSDLAG00005031675 ENSDLAG00005034169 ENSDLAG00005032747 ENSDLAG00005034451 ENSDLAG00005003296 ENSDLAG00005026390 ##22 ENSDLAG00005003497 ENSDLAG00005026895 ENSDLAG00005033825 ENSDLAG00005029945 ENSDLAG00005032405 ENSDLAG00005002855 ENSDLAG00005016386 ENSDLAG00005002766 ENSDLAG00005033396 ENSDLAG00005032216 ENSDLAG00005030632 ENSDLAG00005029023 ENSDLAG00005032670 ENSDLAG00005027850 ENSDLAG00005030342 Large yellow croaker MODERN SPECIES 13 ENSLCRG00005021548 ENSLCRG00005021554 ENSLCRG00005001433 ENSLCRG00005001608 A1CF (ENSLCRG00005001626) ENSLCRG00005001727 ENSLCRG00005002798 asah2 (ENSLCRG00005002835) ENSLCRG00005002863 lect2.1 (ENSLCRG00005002866) bbs1 (ENSLCRG00005002870) slc16a12b (ENSLCRG00005002873) ankrd1b (ENSLCRG00005002880) ENSLCRG00005002893 SYDE1 (ENSLCRG00005002894) ENSLCRG00005002902 ##22 rpp30 (ENSLCRG00005002983) nudt13 (ENSLCRG00005002988) ENSLCRG00005002991 ENSLCRG00005002998 noc3l (ENSLCRG00005003046) ifit10 (ENSLCRG00005003110) ch25h (ENSLCRG00005003112) ENSLCRG00005003121 acta2 (ENSLCRG00005003126) ENSLCRG00005003131 STAMBPL1 (ENSLCRG00005003135) ankrd22 (ENSLCRG00005003142) lipf (ENSLCRG00005003164) rnls (ENSLCRG00005003296) ENSLCRG00005003297 Perciformes ANCESTRAL SPECIES 9 ENSGT00940000160593 ENSGT00940000153713.A ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00390000008540 ENSGT00940000156410.g ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00940000162142.d ENSGT00940000154148.b ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00940000156169.a.a Cottioidei ANCESTRAL SPECIES 12 ENSGT00940000153713.A ENSGT01030000234527.A.a.b.a.b ##16 ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00390000008540 ENSGT00940000156410.g ENSGT00940000153582.b.b.a.b.b ENSGT00940000162142.d ENSGT00940000154148.b ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00940000156169.a.a Lumpfish MODERN SPECIES 10 ENSCLMG00005005223 dpysl4 (ENSCLMG00005002676) ##16 SYDE1 (ENSCLMG00005002663) ENSCLMG00005002610 ##22 rpp30 (ENSCLMG00005002602) noc3l (ENSCLMG00005002302) ENSCLMG00005002292 ENSCLMG00005002287 ch25h (ENSCLMG00005002283) ACTA2 (ENSCLMG00005001867) STAMBPL1 (ENSCLMG00005001860) ankrd22 (ENSCLMG00005001859) lipf (ENSCLMG00005001527) rnls (ENSCLMG00005001445) PTEN (ENSCLMG00005009828) atad1b (ENSCLMG00005009827) minpp1b (ENSCLMG00005009826) ENSCLMG00005009825 bbs1 (ENSCLMG00005009806) Stickleback MODERN SPECIES 5 ENSGACG00000010235 PTS (ENSGACG00000010227) heatr1 (ENSGACG00000010205) arg1 (ENSGACG00000010146) cox11 (ENSGACG00000010135) CBX2 (ENSGACG00000010130) ANKFN1 (ENSGACG00000010120) ENSGACG00000010117 ENSGACG00000010113 HLF (ENSGACG00000010103) ENSGACG00000010100 ENSGACG00000010097 ENSGACG00000010087 dpysl4 (ENSGACG00000010073) ##16 SYDE1 (ENSGACG00000010068) ENSGACG00000010053 ##22 ENSGACG00000010049 atad1b (ENSGACG00000010001) ENSGACG00000009998 rnls (ENSGACG00000009993) lipf (ENSGACG00000009981) ankrd22 (ENSGACG00000009975) ENSGACG00000009972 ENSGACG00000009970 tut1 (ENSGACG00000009956) ENSGACG00000009947 mpp2b (ENSGACG00000009935) ENSGACG00000009932 ENSGACG00000009898 ENSGACG00000009893 dlx3b (ENSGACG00000009888) Perciformes_a ANCESTRAL SPECIES 104 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00390000008540 ENSGT00940000156410.g ENSGT01100000263507.E.a.a.a.b.a.a Pike perch MODERN SPECIES 246 ENSSLUG00000009573 rpp30 (ENSSLUG00000009568) SYDE1 (ENSSLUG00000009564) ENSSLUG00000009561 ENSSLUG00000009305 ##22 rpp30 (ENSSLUG00000009278) nudt13 (ENSSLUG00000009270) noc3l (ENSSLUG00000007892) ENSSLUG00000007819 ENSSLUG00000007811 ENSSLUG00000007764 MFAP4 (ENSSLUG00000007784) ch25h (ENSSLUG00000007759) Channel bull blenny DUPLICATION Channel bull blenny MODERN SPECIES 190 SYDE1 (ENSCGOG00000011282) ENSCGOG00000011281 ENSCGOG00000011278 ENSCGOG00000011276 ENSCGOG00000011271 ENSCGOG00000011269 ENSCGOG00000011199 ##22 Channel bull blenny MODERN SPECIES 202 ENSCGOG00000007194 exosc3 (ENSCGOG00000007192) DGKQ (ENSCGOG00000007184) ENSCGOG00000007180 ##22 ENSCGOG00000007179 ENSCGOG00000007178 ENSCGOG00000007177 ENSCGOG00000007114 ##22 Ovalentaria ANCESTRAL SPECIES 13 ENSGT00940000160593 ENSGT00940000153713.A ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000154610.e.a ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00960000186734 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a Atherinomorphae ANCESTRAL SPECIES 69 ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g Oryzias ANCESTRAL SPECIES 44 ENSGT00390000005232 ENSGT00940000155989.d ENSGT00940000156169.a.a ENSGT00390000015792 ENSGT00950000183033.a.a.c.b ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT01030000234527.A.a.b.a.b ##16 Oryzias_b ANCESTRAL SPECIES 52 ENSGT00940000154615.i.a.a.c.b.a.b.a.f ENSGT00940000154615.i.a.a.c.b.a.b.b ENSGT00940000154615.i.a.a.d.b.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT01030000234527.A.a.b.a.b ##16 Indian medaka MODERN SPECIES 707 MFAP4 (ENSOMEG00000014849) ENSOMEG00000014863 MFAP4 (ENSOMEG00000014876) ENSOMEG00000014892 MFAP4 (ENSOMEG00000014916) MFAP4 (ENSOMEG00000014924) MFAP4 (ENSOMEG00000014946) ENSOMEG00000014988 ENSOMEG00000014993 SYDE1 (ENSOMEG00000015049) ENSOMEG00000000381 ##22 ENSOMEG00000015107 ENSOMEG00000015118 ENSOMEG00000015134 ENSOMEG00000015148 nudt13 (ENSOMEG00000015165) ENSOMEG00000015179 noc3l (ENSOMEG00000015213) ifit10 (ENSOMEG00000015251) ch25h (ENSOMEG00000015266) acta2 (ENSOMEG00000015287) STAMBPL1 (ENSOMEG00000000834) ankrd22 (ENSOMEG00000015426) lipf (ENSOMEG00000015462) rnls (ENSOMEG00000015492) ENSOMEG00000015513 Javanese ricefish MODERN SPECIES 10 ENSOJAG00000013716 CHMP6 (ENSOJAG00000013727) BAIAP2 (ENSOJAG00000013767) AATK (ENSOJAG00000013848) ENSOJAG00000013934 ENSOJAG00000014011 MFAP4 (ENSOJAG00000014053) ENSOJAG00000014059 ENSOJAG00000014072 MFAP4 (ENSOJAG00000014090) MFAP4 (ENSOJAG00000014169) ENSOJAG00000014185 ENSOJAG00000014223 SYDE1 (ENSOJAG00000014233) ENSOJAG00000014237 ENSOJAG00000014300 ##22 rpp30 (ENSOJAG00000014911) nudt13 (ENSOJAG00000014946) MFAP4 (ENSOJAG00000014981) MFAP4 (ENSOJAG00000015044) MFAP4 (ENSOJAG00000015106) MFAP4 (ENSOJAG00000015118) bbs1 (ENSOJAG00000015127) slc16a12b (ENSOJAG00000002013) ENSOJAG00000002026 ENSOJAG00000002033 ENSOJAG00000002041 ENSOJAG00000002061 ENSOJAG00000002105 ENSOJAG00000002178 asah2 (ENSOJAG00000002200) Oryzias_a ANCESTRAL SPECIES 73 ENSGT00390000005232 ENSGT00940000155989.d ENSGT00940000156169.a.a ENSGT00390000015792 ENSGT00950000183033.a.a.c.b ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00960000186734.a ENSGT00390000008540 ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT01030000234527.A.a.b.a.b ##16 ENSGT01000000214725.C Japanese Medaka HdrR MODERN SPECIES 10 ENSORLG00000020371 ENSORLG00000019614 ENSORLG00000024551 MFAP4 (ENSORLG00000020401) ENSORLG00000024348 bbs1 (ENSORLG00000020379) ENSORLG00000020384 ENSORLG00000020388 asah2 (ENSORLG00000020394) ENSORLG00000027066 ENSORLG00000029316 ENSORLG00000020400 ENSORLG00000027007 ENSORLG00000024383 SYDE1 (ENSORLG00000020406) ENSORLG00000028941 ##22 rpp30 (ENSORLG00000020420) ENSORLG00000028876 nudt13 (ENSORLG00000028552) ENSORLG00000030066 ENSORLG00000027826 ENSORLG00000022350 ENSORLG00000028568 ENSORLG00000020055 ENSORLG00000021877 ENSORLG00000027667 ENSORLG00000028936 ENSORLG00000024194 ENSORLG00000025489 ENSORLG00000028310 ch25h (ENSORLG00000019416) Chinese medaka MODERN SPECIES 806 bbs1 (ENSOSIG00000008785) ENSOSIG00000008782 slc16a12b (ENSOSIG00000008780) asah2 (ENSOSIG00000008307) ENSOSIG00000008290 ENSOSIG00000008293 ENSOSIG00000008288 SYDE1 (ENSOSIG00000008287) ENSOSIG00000006644 ##22 Cyprinodontiformes ANCESTRAL SPECIES 65 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00950000182859.B ##22 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 Cyprinodontoidei ANCESTRAL SPECIES 17 ENSGT00940000165237.b.b ENSGT00510000047678.a.a.b ENSGT00940000159689 ENSGT00940000164352.a ENSGT00940000158812.j.a ENSGT00500000044930.e.a ENSGT00390000009492 ENSGT00940000156940.b ENSGT00940000162800 ENSGT00950000182951.A.a.a.c.b ENSGT00390000017961 ENSGT01060000248591.a.a.a.a.a ENSGT00950000183188.A.b ENSGT00940000169563 ENSGT00940000153560.b.b.a.g ENSGT00950000182859.B ##22 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A NAME_4 ANCESTRAL SPECIES 15 ENSGT00390000001723 ENSGT00940000165237.b.b ENSGT00510000047678.a.a.b ENSGT00940000159689 ENSGT00940000164352.a ENSGT00940000158812.j.a ENSGT00500000044930.e.a ENSGT00390000009492 ENSGT00940000156940.b ENSGT00940000162800 ENSGT00950000182951.A.a.a.c.b ENSGT00390000017961 ENSGT01060000248591.a.a.a.a.a ENSGT00950000183188.A.b ENSGT00940000153560.b.b.a.g ENSGT00950000182859.B ##22 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A Mummichog MODERN SPECIES 290 ENSFHEG00000015821 msrb1b (ENSFHEG00000015832) neurl2 (ENSFHEG00000015838) ENSFHEG00000015873 noxo1b (ENSFHEG00000015879) GID4 (ENSFHEG00000015885) atpaf2 (ENSFHEG00000015894) tom1l2 (ENSFHEG00000015915) foxl3 (ENSFHEG00000015932) FAM20C (ENSFHEG00000015955) trrap (ENSFHEG00000016413) nptx2b (ENSFHEG00000016483) tmem130 (ENSFHEG00000016497) baiap2l1a (ENSFHEG00000016505) ENSFHEG00000016513 ENSFHEG00000016541 ##22 SYDE1 (ENSFHEG00000016589) ENSFHEG00000016643 dpysl4 (ENSFHEG00000016682) ##16 ENSFHEG00000016738 Sheepshead minnow MODERN SPECIES 258 ENSCVAG00000021339 msrb1b (ENSCVAG00000021347) neurl2 (ENSCVAG00000021366) ENSCVAG00000021422 noxo1b (ENSCVAG00000021433) GID4 (ENSCVAG00000021462) atpaf2 (ENSCVAG00000021472) tom1l2 (ENSCVAG00000021526) foxl3 (ENSCVAG00000021535) FAM20C (ENSCVAG00000021565) trrap (ENSCVAG00000021669) ENSCVAG00000021694 nptx2b (ENSCVAG00000021699) tmem130 (ENSCVAG00000021703) baiap2l1a (ENSCVAG00000021724) ENSCVAG00000021777 ##22 ENSCVAG00000021803 ENSCVAG00000021818 dpysl4 (ENSCVAG00000021870) ##16 ENSCVAG00000021918 ENSCVAG00000021957 Poeciliinae ANCESTRAL SPECIES 10 ENSGT00940000157625.a.b ENSGT00940000156201.a.a ENSGT00510000047678.a.a.b ENSGT00940000159689 ENSGT00940000164352.a ENSGT00940000158812.j.a ENSGT00500000044930.e.a ENSGT00390000009492 ENSGT00940000156940.b ENSGT00940000162800 ENSGT00950000182951.A.a.a.c.b ENSGT00390000017961.cb ENSGT01060000248591.a.a.a.a.a ENSGT00940000169563 ENSGT00940000153560.b.b.a.g ENSGT00950000182859.B ##22 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A Poecilia ANCESTRAL SPECIES 22 ENSGT00920000149163 ENSGT00940000157625.a.b ENSGT00940000156201.a.a ENSGT00940000159689 ENSGT00940000164352.a ENSGT00940000158812.j.a ENSGT00500000044930.e.a ENSGT00390000009492 ENSGT00940000156940.b ENSGT00940000162800 ENSGT00950000182951.A.a.a.c.b.d ENSGT00390000017961.cb ENSGT01060000248591.a.a.a.a.a ENSGT00940000169563 ENSGT00940000153560.b.b.a.g ENSGT00950000182859.B ##22 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A Guppy DUPLICATION Guppy MODERN SPECIES 449 grid2ipb (ENSPREG00000015659) ENSPREG00000015650 neurl2 (ENSPREG00000015640) ENSPREG00000015592 noxo1b (ENSPREG00000015576) GID4 (ENSPREG00000015566) atpaf2 (ENSPREG00000015550) ENSPREG00000015538 foxl3 (ENSPREG00000015529) FAM20C (ENSPREG00000015492) ENSPREG00000015471 ENSPREG00000015451 ENSPREG00000015438 baiap2l1a (ENSPREG00000015428) ENSPREG00000015418 ##22 ENSPREG00000015409 ##22 Guppy MODERN SPECIES 449 zdhhc4 (ENSPREG00000015676) grid2ipb (ENSPREG00000015659) ENSPREG00000015650 neurl2 (ENSPREG00000015640) ENSPREG00000015592 noxo1b (ENSPREG00000015576) GID4 (ENSPREG00000015566) atpaf2 (ENSPREG00000015550) ENSPREG00000015538 foxl3 (ENSPREG00000015529) FAM20C (ENSPREG00000015492) ENSPREG00000015471 ENSPREG00000015451 ENSPREG00000015438 baiap2l1a (ENSPREG00000015428) ENSPREG00000015418 ##22 ENSPREG00000015409 ##22 NAME_6 ANCESTRAL SPECIES 339 ENSGT00950000182951.A.a.a.c.b.c ENSGT00390000017961.bb ENSGT00390000017961.cb ENSGT01060000248591.a.a.a.a.a ENSGT00940000169563 ENSGT00940000153560.b.b.a.g ENSGT00950000182859.B ##22 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A Amazon molly MODERN SPECIES 742 ENSPFOG00000022606 ENSPFOG00000021897 trrap (ENSPFOG00000001619) nptx2b (ENSPFOG00000002024) ENSPFOG00000002037 baiap2l1a (ENSPFOG00000002098) ENSPFOG00000002559 ##22 FAM20C (ENSPFOG00000023409) ENSPFOG00000023014 ENSPFOG00000003085 SYDE1 (ENSPFOG00000003093) ENSPFOG00000003179 ENSPFOG00000003218 dpysl4 (ENSPFOG00000003620) ##16 ENSPFOG00000024083 Sailfin molly MODERN SPECIES 3053 ENSPLAG00000007501 ##22 Platyfish MODERN SPECIES 1 ENSXMAG00000000148 noxo1b (ENSXMAG00000029525) GID4 (ENSXMAG00000000156) atpaf2 (ENSXMAG00000000163) ENSXMAG00000022873 ENSXMAG00000023560 FAM20C (ENSXMAG00000015864) ENSXMAG00000028028 ENSXMAG00000008214 ENSXMAG00000021878 ENSXMAG00000025577 ENSXMAG00000003857 nptx2b (ENSXMAG00000028238) ENSXMAG00000003842 baiap2l1a (ENSXMAG00000003821) ENSXMAG00000006633 ##22 SYDE1 (ENSXMAG00000008057) ENSXMAG00000003207 ENSXMAG00000000282 ENSXMAG00000025669 dpysl4 (ENSXMAG00000000241) ##16 ENSXMAG00000018270 ENSXMAG00000025961 FMN2 (ENSXMAG00000025975) ENSXMAG00000010871 ENSXMAG00000022965 ENSXMAG00000022189 ENSXMAG00000021985 Aplocheiloidei ANCESTRAL SPECIES 47 ENSGT00940000154615.i.a.a.c.b.b ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a.b ENSGT00960000186734 ENSGT00390000008540 ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a ENSGT00390000018409.g ENSGT00950000182859.B ##22 ENSGT01030000234635.a.a.a.b ENSGT00940000155648.A.b ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000160593 Turquoise killifish MODERN SPECIES 1621 LECT2 (ENSNFUG00015008007) MFAP4 (ENSNFUG00015008015) rpp30 (ENSNFUG00015008031) nudt13 (ENSNFUG00015008040) ENSNFUG00015008051 NOC3L (ENSNFUG00015008102) ch25h (ENSNFUG00015008342) acta2 (ENSNFUG00015008359) STAMBPL1 (ENSNFUG00015008384) ankrd22 (ENSNFUG00015008540) lipf (ENSNFUG00015008561) RNLS (ENSNFUG00015008613) ENSNFUG00015008622 atad1b (ENSNFUG00015008629) MINPP1B (ENSNFUG00015008633) ENSNFUG00015008643 ##22 ENSNFUG00015008854 Nfu_g_1_000947 (ENSNFUG00015008862) dpysl4 (ENSNFUG00015008878) ##16 JAKMIP3 (ENSNFUG00015009430) ENSNFUG00015009515 ADAM8B (ENSNFUG00015009533) tubgcp2 (ENSNFUG00015009550) KCTD2 (ENSNFUG00015009597) SLC16A5 (ENSNFUG00015009652) ENSNFUG00015009657 BX324231.1 (ENSNFUG00015009676) ACSF2 (ENSNFUG00015009840) CHAD (ENSNFUG00015010424) armc7 (ENSNFUG00015010428) NDEL1A (ENSNFUG00015010443) Mangrove rivulus DUPLICATION Mangrove rivulus MODERN SPECIES 801 ENSKMAG00000020689 ENSKMAG00000020707 ##22 Mangrove rivulus MODERN SPECIES 1317 ENSKMAG00000011751 ##22 Ovalentaria_B ANCESTRAL SPECIES 21 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00960000186734 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a Cichlidae ANCESTRAL SPECIES 15 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i.a.b ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a Pseudocrenilabrinae ANCESTRAL SPECIES 9 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i.a.b ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 7 ENSGT00940000166405 ENSGT00940000156955.a.b.h ENSGT00940000155157.b ENSGT00970000193381.a.b.a.a.b.b.a ENSGT00390000015768.i.b ENSGT00940000160064.a.a ENSGT00530000064550.B ENSGT00940000155910.c.b.b ENSGT00940000157037.b.b.a ENSGT00940000159911 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i.a.b ENSGT00940000162142.d ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b ENSGT00550000074823.b.a Haplochromini ANCESTRAL SPECIES 17 ENSGT00940000166405 ENSGT00940000156955.a.b.h ENSGT00940000155157.b ENSGT00970000193381.a.b.a.a.b.b.a ENSGT00390000015768.i.b ENSGT00940000160064.a.a ENSGT00530000064550.B ENSGT00940000155910.c.b.b ENSGT00940000153912.A.a ENSGT00960000187086 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT00960000186734 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i.a.b ENSGT00940000162142.d.e.a.b ENSGT00940000162142.d.e.a.a ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b Haplochromini_A ANCESTRAL SPECIES 16 ENSGT00940000166405 ENSGT00940000156955.a.b.h ENSGT00940000155157.b ENSGT00970000193381.a.b.a.a.b.b.a ENSGT00390000015768.i.b ENSGT00940000160064.a.a ENSGT00530000064550.B ENSGT00940000155910.c.b.b ENSGT00940000153912.A.a ENSGT00960000187086 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i.a.b ENSGT00940000162142.d.e.a.b ENSGT00940000162142.d.e.a.a ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b P. nyererei MODERN SPECIES 426 ENSPNYG00000016047 ABCA5 (ENSPNYG00000016106) asb3 (ENSPNYG00000016451) ENSPNYG00000016467 ENSPNYG00000016475 htra1b (ENSPNYG00000016491) PLEKHA1 (ENSPNYG00000016523) ENSPNYG00000016564 WAPL (ENSPNYG00000016594) ENSPNYG00000016677 GRID1 (ENSPNYG00000016738) dpysl4 (ENSPNYG00000016768) ##16 ENSPNYG00000016792 ENSPNYG00000016835 SYDE1 (ENSPNYG00000016842) ENSPNYG00000016876 ##22 ENSPNYG00000016930 ENSPNYG00000017015 nudt13 (ENSPNYG00000017064) noc3l (ENSPNYG00000017102) ENSPNYG00000017218 ch25h (ENSPNYG00000017233) acta2 (ENSPNYG00000017244) STAMBPL1 (ENSPNYG00000017268) ankrd22 (ENSPNYG00000017299) lipf (ENSPNYG00000017322) rnls (ENSPNYG00000017340) ENSPNYG00000017365 atad1b (ENSPNYG00000017385) minpp1b (ENSPNYG00000017421) ENSPNYG00000017430 Haplochromini_B ANCESTRAL SPECIES 61 ENSGT00940000166405 ENSGT00940000156955.a.b.h ENSGT00940000155157.b ENSGT00970000193381.a.b.a.a.b.b.a ENSGT00390000015768.i.b ENSGT00940000160064.a.a ENSGT00530000064550.B ENSGT00940000155910.c.b.b ENSGT00940000153912.A.a ENSGT00960000187086 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00950000182946.lb.a.i.a.b ENSGT00940000162142.d.e.a.b ENSGT00940000162142.d.e.a.a ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000163053.c.b Zebra mbuna MODERN SPECIES 1106 GRID1 (ENSMZEG00005018604) ENSMZEG00005018584 ENSMZEG00005018580 ENSMZEG00005018570 dpysl4 (ENSMZEG00005018550) ##16 ENSMZEG00005018540 ENSMZEG00005018530 ENSMZEG00005018527 SYDE1 (ENSMZEG00005018521) ENSMZEG00005018513 ##22 RPP30 (ENSMZEG00005018508) nudt13 (ENSMZEG00005018506) ENSMZEG00005018502 ENSMZEG00005018501 noc3l (ENSMZEG00005018478) ENSMZEG00005018467 ENSMZEG00005018463 ch25h (ENSMZEG00005018457) ch25h (ENSMZEG00005018454) acta2 (ENSMZEG00005018452) STAMBPL1 (ENSMZEG00005018446) ankrd22 (ENSMZEG00005018441) lipf (ENSMZEG00005018439) rnls (ENSMZEG00005018436) ENSMZEG00005018421 Eastern happy MODERN SPECIES 20 WAPL (ENSACLG00000019401) ENSACLG00000019380 ENSACLG00000019365 ENSACLG00000019356 ENSACLG00000019306 ENSACLG00000019298 GRID1 (ENSACLG00000018947) ENSACLG00000018825 ENSACLG00000018813 ENSACLG00000018779 dpysl4 (ENSACLG00000018677) ##16 ENSACLG00000018647 ENSACLG00000018491 ENSACLG00000018422 SYDE1 (ENSACLG00000018356) ENSACLG00000018261 ##22 ENSACLG00000018243 TNKS2 (ENSACLG00000018157) MFAP4 (ENSACLG00000018116) ENSACLG00000018097 ENSACLG00000018089 ENSACLG00000018081 STXBP4 (ENSACLG00000018047) HLF (ENSACLG00000018029) SMIM36 (ENSACLG00000018023) ENSACLG00000018019 TMEM100 (ENSACLG00000018005) ENSACLG00000017962 ENSACLG00000017910 ENSACLG00000017904 ENSACLG00000017844 Burton s mouthbrooder MODERN SPECIES 411 asb3 (ENSHBUG00000013230) ENSHBUG00000013218 htra1b (ENSHBUG00000013212) PLEKHA1 (ENSHBUG00000013169) ENSHBUG00000000383 WAPL (ENSHBUG00000013118) ENSHBUG00000013018 ENSHBUG00000013008 GRID1 (ENSHBUG00000012989) ENSHBUG00000012934 ENSHBUG00000012923 dpysl4 (ENSHBUG00000012907) ##16 ENSHBUG00000012855 ENSHBUG00000012790 SYDE1 (ENSHBUG00000012779) ENSHBUG00000012736 ##22 Lyretail cichlid MODERN SPECIES 317 asb3 (ENSNBRG00000024112) ENSNBRG00000024116 ENSNBRG00000024118 ENSNBRG00000024124 ENSNBRG00000024130 ENSNBRG00000024131 ENSNBRG00000024135 ENSNBRG00000024137 ENSNBRG00000024143 GRID1 (ENSNBRG00000024147) ENSNBRG00000024150 ENSNBRG00000024152 ##16 ENSNBRG00000024156 ENSNBRG00000024159 SYDE1 (ENSNBRG00000024162) ENSNBRG00000024165 ##22 RPP30 (ENSNBRG00000024170) nudt13 (ENSNBRG00000024177) ENSNBRG00000024179 ENSNBRG00000024181 noc3l (ENSNBRG00000024182) ENSNBRG00000024188 ch25h (ENSNBRG00000000360) acta2 (ENSNBRG00000000400) STAMBPL1 (ENSNBRG00000000435) ankrd22 (ENSNBRG00000000479) lipf (ENSNBRG00000000517) rnls (ENSNBRG00000000554) ENSNBRG00000000564 atad1b (ENSNBRG00000000727) minpp1b (ENSNBRG00000000780) Nile tilapia MODERN SPECIES 20 ENSONIG00000028771 AATK (ENSONIG00000035644) BAIAP2 (ENSONIG00000018039) CHMP6 (ENSONIG00000018038) ENSONIG00000038807 ENSONIG00000032076 ENSONIG00000019150 dpysl4 (ENSONIG00000019146) ##16 ENSONIG00000029798 ENSONIG00000019145 ENSONIG00000040798 ENSONIG00000030261 ENSONIG00000037545 ENSONIG00000029701 SYDE1 (ENSONIG00000019143) ENSONIG00000019141 ##22 rpp30 (ENSONIG00000019140) nudt13 (ENSONIG00000029273) ENSONIG00000027783 ENSONIG00000019139 ENSONIG00000040590 ENSONIG00000038234 noc3l (ENSONIG00000019138) ENSONIG00000019137 ENSONIG00000035612 ENSONIG00000036970 ch25h (ENSONIG00000019131) ch25h (ENSONIG00000040070) acta2 (ENSONIG00000005683) STAMBPL1 (ENSONIG00000019129) ankrd22 (ENSONIG00000019128) Midas cichlid MODERN SPECIES 503 WAPL (ENSACIG00000023432) ENSACIG00000023427 PLEKHA1 (ENSACIG00000023418) htra1b (ENSACIG00000023409) ENSACIG00000023404 ENSACIG00000023395 asb3 (ENSACIG00000023362) ABCA5 (ENSACIG00000023249) ENSACIG00000023212 ENSACIG00000023004 ENSACIG00000022977 ENSACIG00000022950 dpysl4 (ENSACIG00000022935) ##16 ENSACIG00000022924 SYDE1 (ENSACIG00000022911) ENSACIG00000022892 ##22 ENSACIG00000022853 rpp30 (ENSACIG00000022810) ENSACIG00000022738 ENSACIG00000022720 noc3l (ENSACIG00000022699) ENSACIG00000022687 Pomacentridae ANCESTRAL SPECIES 142 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00940000162142.d ENSGT00940000154148.b ENSGT00940000154710.a.a ENSGT00940000153710.b ENSGT00390000009005 ENSGT00940000154696 ENSGT00390000016052 ENSGT00940000154335.b ENSGT00940000163053.c.b Bicolor damselfish MODERN SPECIES 1790 ENSSPAG00000020095 ENSSPAG00000020111 dpysl4 (ENSSPAG00000020115) ##16 ENSSPAG00000020144 ENSSPAG00000020197 SYDE1 (ENSSPAG00000020200) ENSSPAG00000020218 ##22 Pomacentridae_A DUPLICATION Pomacentridae_A DUPLICATION Pomacentridae_A ANCESTRAL SPECIES 208 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B.i.a ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00940000154615.i.a.a.c.a.b Amphiprion ANCESTRAL SPECIES 248 ENSGT00940000154610.e.a ENSGT01030000234527.A.a.b.a.b ##16 ENSGT00940000153713.A ENSGT00940000153956.a.a ENSGT00940000155648.A.b ENSGT01030000234635.a.a.a.b ENSGT00950000182859.B.i.a ##22 ENSGT00390000000883 ENSGT00940000158879 ENSGT01100000263507.E.a.a.a.b.a.a ENSGT00960000186734 ENSGT00390000008540 ENSGT00950000182946.lb.a.j ENSGT00940000154615.i.a.a.c.a.b Clown anemonefish DUPLICATION Clown anemonefish MODERN SPECIES 3654 ENSAOCG00000016343 ENSAOCG00000016363 dpysl4 (ENSAOCG00000016404) ##16 ENSAOCG00000016461 ENSAOCG00000016486 ENSAOCG00000016492 SYDE1 (ENSAOCG00000001133) ENSAOCG00000001135 ##22 ENSAOCG00000016542 ##22 Clown anemonefish MODERN SPECIES 3654 ENSAOCG00000016343 ENSAOCG00000016363 dpysl4 (ENSAOCG00000016404) ##16 ENSAOCG00000016461 ENSAOCG00000016486 ENSAOCG00000016492 SYDE1 (ENSAOCG00000001133) ENSAOCG00000001135 ##22 ENSAOCG00000016542 ##22 Orange clownfish MODERN SPECIES 10 gna13a (ENSAPEG00000008112) ENSAPEG00000008137 BICRAL (ENSAPEG00000008149) tbcc (ENSAPEG00000008171) prph2a (ENSAPEG00000008191) qki2 (ENSAPEG00000008210) timm23a (ENSAPEG00000008254) zgc:112285 (ENSAPEG00000008282) ENSAPEG00000008317 ENSAPEG00000008347 dpysl4 (ENSAPEG00000008359) ##16 ENSAPEG00000008460 ENSAPEG00000008569 SYDE1 (ENSAPEG00000008588) ENSAPEG00000008613 ENSAPEG00000008635 ##22 rpp30 (ENSAPEG00000008697) nudt13 (ENSAPEG00000008726) ENSAPEG00000008746 ENSAPEG00000008751 noc3l (ENSAPEG00000008785) ENSAPEG00000008902 mfap4.2 (ENSAPEG00000008992) minpp1b (ENSAPEG00000009033) atad1b (ENSAPEG00000009038) ENSAPEG00000009089 rnls (ENSAPEG00000009373) lipf (ENSAPEG00000009382) ankrd22 (ENSAPEG00000009388) ENSAPEG00000009418 STAMBPL1 (ENSAPEG00000009437) Spiny chromis MODERN SPECIES 2537 SYDE1 (ENSAPOG00000009421) ENSAPOG00000009337 ##22 Pomacentridae_A ANCESTRAL SPECIES ENSGT00950000182859.B.i.b ##22 Spiny chromis MODERN SPECIES 1945 ENSAPOG00000003357 ##22 Pomacentridae_A ANCESTRAL SPECIES ENSGT00950000182859.B.j ##22 Amphiprion ANCESTRAL SPECIES ENSGT00950000182859.B.j ##22 Clown anemonefish MODERN SPECIES 1879 ENSAOCG00000002384 ENSAOCG00000007595 SYNPO2L (ENSAOCG00000007582) MYOZ1 (ENSAOCG00000007570) hhat (ENSAOCG00000007566) KCNH1 (ENSAOCG00000007526) mrpl57 (ENSAOCG00000007480) ENSAOCG00000007469 ENSAOCG00000007451 s1pr5a (ENSAOCG00000007377) ENSAOCG00000007369 ##22 Protacanthopterygii ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Salmoninae ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Huchen MODERN SPECIES 7545 ENSHHUG00000004750 ##22 Salmoninae_a ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Oncorhynchus ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Rainbow trout MODERN SPECIES 68 ENSOMYG00000067839 ##22 Oncorhynchus_a ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Coho salmon MODERN SPECIES 33 anapc16 (ENSOKIG00005044797) ascc1 (ENSOKIG00005044806) ENSOKIG00005044840 SPOCK2 (ENSOKIG00005044843) ENSOKIG00005044847 ppa1a (ENSOKIG00005044852) lrrc20 (ENSOKIG00005044862) ENSOKIG00005044998 ndr2 (ENSOKIG00005046544) ENSOKIG00005046548 ENSOKIG00005046554 ENSOKIG00005046565 ENSOKIG00005046657 bnip3 (ENSOKIG00005046822) ##19 ENSOKIG00005046839 #21 ENSOKIG00005046968 ##22 ebf3a (ENSOKIG00005046976) ##22 PTPRE (ENSOKIG00005047066) CLRN3 (ENSOKIG00005048151) foxi1 (ENSOKIG00005048153) dock1 (ENSOKIG00005048213) ENSOKIG00005048608 ENSOKIG00005048609 ENSOKIG00005048613 ENSOKIG00005048614 oat (ENSOKIG00005048618) CHST15 (ENSOKIG00005048643) CPXM2 (ENSOKIG00005048676) ENSOKIG00005048865 ENSOKIG00005048868 GPR26 (ENSOKIG00005048878) Chinook salmon MODERN SPECIES 1836 ENSOTSG00005019490 ##22 Otomorpha ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Clupeiformes ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Denticle herring MODERN SPECIES 11 wbp2 (ENSDCDG00000014416) ENSDCDG00000014411 mrpl38 (ENSDCDG00000014405) ENSDCDG00000013942 ENSDCDG00000013882 znf281b (ENSDCDG00000013762) muc13b (ENSDCDG00000013757) ENSDCDG00000013752 ENSDCDG00000013748 cbln10 (ENSDCDG00000013745) EDRF1 (ENSDCDG00000011530) ENSDCDG00000011109 add3b (ENSDCDG00000008587) smndc1 (ENSDCDG00000008525) ENSDCDG00000006257 ##21 ENSDCDG00000005938 ##22 ENSDCDG00000012577 ptpreb (ENSDCDG00000012425) ENSDCDG00000012347 ENSDCDG00000012341 ENSDCDG00000010923 ENSDCDG00000010858 ENSDCDG00000010849 ENSDCDG00000010842 zgc:123217 (ENSDCDG00000010746) ENSDCDG00000010720 ENSDCDG00000010709 ppp4cb (ENSDCDG00000010678) eif3c (ENSDCDG00000010624) zgc:92040 (ENSDCDG00000010538) tbx6 (ENSDCDG00000010512) Otophysi ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Characiphysae ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Characiphysae_b ANCESTRAL SPECIES ENSGT00950000182859.B ##22 Electric eel MODERN SPECIES 1136 ENSEEEG00000009003 ##22 Cyprinoidei ANCESTRAL SPECIES 24 ENSGT00940000155540.b.a ENSGT00940000157732.e ENSGT00940000156696.C ENSGT01030000234563.b.a.b.a.b.b ENSGT00940000155257.b.b.e ENSGT00940000153352.B ENSGT00390000013415.a.a.c ##19 ENSGT00950000182859.B ##22 ENSGT00390000015799 ENSGT00390000009274 ENSGT00390000015361 ENSGT00390000007694 ENSGT00940000166901 ENSGT00940000156635 ENSGT00940000153968.a.a ENSGT00940000154906.C.d ENSGT00940000160084.g ENSGT00940000161899 ENSGT00940000154209.a.b.a ENSGT00940000156661.b ENSGT00950000183122.A.d.a ENSGT00940000166815 ENSGT01030000235112.b Cyprininae ANCESTRAL SPECIES 180 ENSGT00390000014563.a.a.b.a ENSGT00390000014794.b.l.d ENSGT00940000153335.a.b.n ENSGT00940000154939.e.b.v ENSGT00390000013594.o.b ENSGT00940000156416.d.d ENSGT00940000161766.a ENSGT00940000175945 ENSGT00940000155540.b.a ENSGT00940000157732.e.a ENSGT00940000156696.C.a ENSGT01030000234563.b.a.b.a.b.b.e ENSGT00940000155257.b.b.e.a ENSGT00940000153352.B.p ENSGT00390000013415.a.a.c.a.b ##19 ENSGT00950000182859.B ##22 ENSGT00390000015799.a ENSGT00390000009274.f ENSGT00390000015361.h ENSGT00390000007694.d ENSGT00940000166901 ENSGT00940000156635.s.a ENSGT00940000153968.a.a.h ENSGT00940000154906.C.d ENSGT00940000160084.g.c ENSGT01030000235112.b ENSGT00940000154289.B.e.a ENSGT00940000154209.a.b.b ENSGT00940000156661.a.a ENSGT00940000158794.n.a ENSGT00800000124060.A.b.c Goldfish MODERN SPECIES 8 TMEM26 (ENSCARG00000017068) cdk1 (ENSCARG00000017046) ANK3 (ENSCARG00000013668) ccdc6a (ENSCARG00000013291) slc16a9a (ENSCARG00000013271) npy4r (ENSCARG00000013899) ENSCARG00000013892 ENSCARG00000013886 samd8 (ENSCARG00000013879) ENSCARG00000013863 neurl1ab (ENSCARG00000013855) ENSCARG00000013832 add3b (ENSCARG00000012478) smndc1 (ENSCARG00000012376) bnip4 (ENSCARG00000012363) ##19 ENSCARG00000012355 ##22 ENSCARG00000012336 sGnRH (ENSCARG00000012327) ecd (ENSCARG00000012303) ENSCARG00000012294 actn2b (ENSCARG00000011457) CHRM3 (ENSCARG00000011187) ENSCARG00000011182 ENSCARG00000011174 rgs7a (ENSCARG00000011027) reep3a (ENSCARG00000010993) cyp26c1 (ENSCARG00000010979) slc22a15 (ENSCARG00000010909) kif11 (ENSCARG00000010872) dicer1 (ENSCARG00000010712) gsc (ENSCARG00000010686) Cyprininae_a ANCESTRAL SPECIES 24 ENSGT00390000014563.a.a.b.a ENSGT00390000014794.b.l.d ENSGT00940000153335.a.b.n ENSGT00940000154939.e.b.v ENSGT00390000013594.o.b ENSGT00940000156416.d.d ENSGT00940000161766.a ENSGT00940000175945 ENSGT00940000155540.b.a ENSGT00940000157732.e.a ENSGT00940000156696.C.a ENSGT01030000234563.b.a.b.a.b.b.e ENSGT00940000155257.b.b.e.a ENSGT00940000153352.B.p ENSGT00390000013415.a.a.c.a.b ##19 ENSGT00950000182859.B ##22 ENSGT00390000015799.a ENSGT00390000009274.f ENSGT00390000015361.h ENSGT00390000007694.d ENSGT00940000166901.a ENSGT00940000156635.s.a ENSGT00940000153968.a.a.h ENSGT00940000154906.C.d ENSGT00940000160084.g.c ENSGT00940000161899 ENSGT00940000154209.a.a.h.c.b ENSGT01030000235112.b ENSGT00940000154289.B.e.a ENSGT00940000154209.a.b.b.d ENSGT00940000156661.a.b Common carp reference MODERN SPECIES 30 ube2d1a (ENSCCRG00000020078) BICC1 (ENSCCRG00000040186) phyhipla (ENSCCRG00000060986) TMEM26 (ENSCCRG00000061628) cdk1 (ENSCCRG00000082622) ANK3 (ENSCCRG00000054685) ccdc6a (ENSCCRG00000031312) slc16a9a (ENSCCRG00000078002) ENSCCRG00000013610 samd8 (ENSCCRG00000013613) ENSCCRG00000013615 neurl1ab (ENSCCRG00000074164) ENSCCRG00000001629 add3b (ENSCCRG00000007879) smndc1 (ENSCCRG00000007800) ENSCCRG00000007774 ##22 mgmt (ENSCCRG00000062702) gnrh3 (ENSCCRG00000007763) ecd (ENSCCRG00000013901) ENSCCRG00000057691 ENSCCRG00000079709 p4ha1b (ENSCCRG00000046970) actn2b (ENSCCRG00000012161) RYR2 (ENSCCRG00000012270) CHRM3 (ENSCCRG00000055880) ENSCCRG00000056838 ENSCCRG00000067840 GREM2 (ENSCCRG00000077432) rgs7a (ENSCCRG00000065865) reep3a (ENSCCRG00000000257) cyp26c1 (ENSCCRG00000056649) Golden-line barbel MODERN SPECIES 53 phyhipla (ENSSGRG00000039510) TMEM26 (ENSSGRG00000039509) cdk1 (ENSSGRG00000039386) ANK3 (ENSSGRG00000039269) ccdc6a (ENSSGRG00000039178) slc16a9a (ENSSGRG00000039174) npy4r (ENSSGRG00000039173) ENSSGRG00000039172 samd8 (ENSSGRG00000039171) ENSSGRG00000039170 neurl1ab (ENSSGRG00000039169) ENSSGRG00000039074 add3b (ENSSGRG00000039066) smndc1 (ENSSGRG00000039065) bnip4 (ENSSGRG00000039064) ##19 ENSSGRG00000039063 ##22 mgmt (ENSSGRG00000039062) gnrh3 (ENSSGRG00000039061) ecd (ENSSGRG00000039041) ENSSGRG00000039034 ENSSGRG00000039033 p4ha1b (ENSSGRG00000038650) ENSSGRG00000038640 actn2b (ENSSGRG00000038638) ENSSGRG00000038634 CHRM3 (ENSSGRG00000038627) FMN2 (ENSSGRG00000038626) GREM2 (ENSSGRG00000038624) rgs7a (ENSSGRG00000038623) rgs7a (ENSSGRG00000038617) reep3a (ENSSGRG00000038612) Zebrafish MODERN SPECIES 8 cdk1 (ENSDARG00000087554) ANK3 (ENSDARG00000061736) ccdc6a (ENSDARG00000043334) slc16a9a (ENSDARG00000013926) npy4r (ENSDARG00000043341) ENSDARG00000097416 ENSDARG00000097503 ENSDARG00000097398 samd8 (ENSDARG00000074663) ENSDARG00000061758 neurl1ab (ENSDARG00000061773) ENSDARG00000077349 add3b (ENSDARG00000056250) smndc1 (ENSDARG00000056235) bnip4 (ENSDARG00000022832) ##19 ENSDARG00000091287 ##22 mgmt (ENSDARG00000043275) gnrh3 (ENSDARG00000056214) ecd (ENSDARG00000022944) ENSDARG00000097693 p4ha1b (ENSDARG00000071082) actn2b (ENSDARG00000071090) RYR2 (ENSDARG00000003706) CHRM3 (ENSDARG00000071091) ENSDARG00000023318 GREM2 (ENSDARG00000056057) rgs7a (ENSDARG00000016584) reep3a (ENSDARG00000017569) cyp26c1 (ENSDARG00000056029) slc22a15 (ENSDARG00000055445) kif11 (ENSDARG00000010948)