Osteoglossocephalai	ANCESTRAL SPECIES	115	ENSGT00940000158821	ENSGT00940000156725	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161534	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b ##24	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561 #19	ENSGT00940000165672	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674 #22	ENSGT00940000157064.a.b.b	ENSGT00730000111085.B	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927 #27
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	126	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157155	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594
Euteleosteomorpha	ANCESTRAL SPECIES	64	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157155	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157155	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157155	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00980000198596.B	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT01100000263594.a
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.f #35
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00390000004940.a.a #8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.f #35
European seabass	MODERN SPECIES		ENSDLAG00005000349 #7	camk2n1a (ENSDLAG00005000346) #8	mul1a (ENSDLAG00005033371) #9	alg3 (ENSDLAG00005026331) #10	ENSDLAG00005000332 #11	ENSDLAG00005000327 #12	chrng (ENSDLAG00005000305) #13	ENSDLAG00005000281 #14	eif4e2 (ENSDLAG00005000271) #15	ENSDLAG00005000250 #16	ENSDLAG00005000231 #17	ENSDLAG00005000222 #18	ENSDLAG00005000111 #19	ENSDLAG00005000077 #20	ENSDLAG00005025234 #21	ENSDLAG00005025229 #22	ENSDLAG00005025227 #23	ENSDLAG00005000160 #24	prpf38b (ENSDLAG00005025221) #25	eeig2a (ENSDLAG00005025216) #26	ENSDLAG00005031899 #27	ENSDLAG00005025119 #28	ENSDLAG00005034749 #29	ENSDLAG00005025115 #30	ENSDLAG00005025106 #31	MAU2 (ENSDLAG00005025001) #32	ENSDLAG00005024979 #33	NDUFA13 (ENSDLAG00005026360) #34	ENSDLAG00005030125 #35	ENSDLAG00005024964 #36	ENSDLAG00005033484 #37
Large yellow croaker	MODERN SPECIES	483	alg3 (ENSLCRG00005004947) #10	ENSLCRG00005004950 #11	ENSLCRG00005004951 #12	ENSLCRG00005004952	chrng (ENSLCRG00005004957) #13	ENSLCRG00005005037 #14	eif4e2 (ENSLCRG00005005042) #15	CAPN10 (ENSLCRG00005005119) #16	ENSLCRG00005005167 #17	ENSLCRG00005005172 #17	ENSLCRG00005005173 #18	WDR47 (ENSLCRG00005005184) #19	CAMSAP2 (ENSLCRG00005005228) #24	ENSLCRG00005005243 #20	ENSLCRG00005005965 #21	ENSLCRG00005005969 #22	ENSLCRG00005005971	ENSLCRG00005005973 #23	prpf38b (ENSLCRG00005005975) #25	eeig2a (ENSLCRG00005005979) #26	ENSLCRG00005005985 #27	PRKAB2 (ENSLCRG00005006005)	ENSLCRG00005006008 #28	tm6sf2a (ENSLCRG00005006010) #29	ENSLCRG00005006013 #30	SLC25A42 (ENSLCRG00005006016)	ARMC6 (ENSLCRG00005006018) #31	MAU2 (ENSLCRG00005006019) #32	ENSLCRG00005006021 #33	NDUFA13 (ENSLCRG00005006023) #34	cirbpa (ENSLCRG00005006025) #35
Gilthead seabream	MODERN SPECIES	13	mul1a (ENSSAUG00010023499) #9	alg3 (ENSSAUG00010023502) #10	ENSSAUG00010016830 #11	ENSSAUG00010016834 #12	chrng (ENSSAUG00010016835) #13	ENSSAUG00010016837 #14	eif4e2 (ENSSAUG00010016839) #15	CAPN10 (ENSSAUG00010016851) #16	ENSSAUG00010016972 #17	ENSSAUG00010016973 #18	ENSSAUG00010016976	CAMSAP2 (ENSSAUG00010016981) #24	WDR47 (ENSSAUG00010016988) #19	ENSSAUG00010017008 #20	ENSSAUG00010017015 #21	FNDC7 (ENSSAUG00010017017) #22	ENSSAUG00010017020	ENSSAUG00010017021	ENSSAUG00010017022	eeig2a (ENSSAUG00010017023) #26	ENSSAUG00010017028 #27	PRKAB2 (ENSSAUG00010017078)	ENSSAUG00010017087 #28	tm6sf2a (ENSSAUG00010017095) #29	ENSSAUG00010017099 #30	SLC25A42 (ENSSAUG00010017105)	ARMC6 (ENSSAUG00010017108) #31	MAU2 (ENSSAUG00010017124) #32	ENSSAUG00010017786 #33	NDUFA13 (ENSSAUG00010017787) #34	cirbpa (ENSSAUG00010017789) #35
Perciformes	ANCESTRAL SPECIES	5	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00940000164140 #7	ENSGT00390000004940.a.a #8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00980000198596.C	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.e.a.a ##35
Lumpfish	MODERN SPECIES	8	MAP6D1 (ENSCLMG00005006293)	EEF1AKMT4 (ENSCLMG00005006294) #7	camk2n1a (ENSCLMG00005006296) #8	mul1a (ENSCLMG00005006298) #9	alg3 (ENSCLMG00005006301) #10	ENSCLMG00005006302 #11	ENSCLMG00005006303 #11	ENSCLMG00005006305 #12	chrng (ENSCLMG00005006307) #13	ENSCLMG00005006321 #14	eif4e2 (ENSCLMG00005006325) #15	CAPN10 (ENSCLMG00005006351) #16	ENSCLMG00005006377 #17	ENSCLMG00005006378 #18	ENSCLMG00005006381	ENSCLMG00005006382 #22	ENSCLMG00005006389	ENSCLMG00005006394	eeig2a (ENSCLMG00005006397) #26	ENSCLMG00005006402 #27	PRKAB2 (ENSCLMG00005006423)	ENSCLMG00005006424 #28	ENSCLMG00005006425 #28	tm6sf2a (ENSCLMG00005006427) #29	ENSCLMG00005006428 #30	SLC25A42 (ENSCLMG00005006431)	ARMC6 (ENSCLMG00005006432) #31	ENSCLMG00005006433 #33	NDUFA13 (ENSCLMG00005006434) #34	ENSCLMG00005006435 ##35	ENSCLMG00005006436 #36
Stickleback	MODERN SPECIES	2	ENSGACG00000015064	ENSGACG00000015065 #7	camk2n1a (ENSGACG00000015066) #8	mul1a (ENSGACG00000015067) #9	alg3 (ENSGACG00000015073) #10	ENSGACG00000015077 #11	ENSGACG00000015080 #12	chrng (ENSGACG00000015082) #13	ENSGACG00000015088 #14	eif4e2 (ENSGACG00000015090) #15	CAPN10 (ENSGACG00000015101) #16	ENSGACG00000015108	CAMSAP2 (ENSGACG00000015109) #24	WDR47 (ENSGACG00000015130) #19	ENSGACG00000015136 #20	FNDC7 (ENSGACG00000015145) #22	ENSGACG00000015150	ENSGACG00000015153	prpf38b (ENSGACG00000015154) #25	eeig2a (ENSGACG00000015158) #26	ENSGACG00000015163 #27	PRKAB2 (ENSGACG00000015165)	ENSGACG00000015168 #28	ENSGACG00000015171	tm6sf2a (ENSGACG00000015175) #29	ENSGACG00000015182 #30	SLC25A42 (ENSGACG00000015189)	ARMC6 (ENSGACG00000015191) #31	GATAD2A (ENSGACG00000015199) #33	NDUFA13 (ENSGACG00000015203) #34	cirbpa (ENSGACG00000015206) ##35
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.e.b ##35	ENSGT00510000049027.d #36
Channel bull blenny	MODERN SPECIES	8	camk2n1a (ENSCGOG00000010049) #8	mul1a (ENSCGOG00000010064) #9	alg3 (ENSCGOG00000010066) #10	ENSCGOG00000010085 #11	ENSCGOG00000010086 #12	chrng (ENSCGOG00000010089) #13	ENSCGOG00000010105 #14	eif4e2 (ENSCGOG00000010109) #15	CAPN10 (ENSCGOG00000010116) #16	ENSCGOG00000010356 #18	ENSCGOG00000010368	CAMSAP2 (ENSCGOG00000010375) #24	WDR47 (ENSCGOG00000010600) #19	ENSCGOG00000010904 #20	ENSCGOG00000010912	ENSCGOG00000010919 #22	ENSCGOG00000010923 #23	ENSCGOG00000010927	eeig2a (ENSCGOG00000010934) #26	ENSCGOG00000010953 #27	PRKAB2 (ENSCGOG00000011491)	ENSCGOG00000011527 #28	ENSCGOG00000011528 #28	ENSCGOG00000011532 #28	tm6sf2a (ENSCGOG00000011535) #29	ENSCGOG00000011544 #30	SLC25A42 (ENSCGOG00000011556)	ARMC6 (ENSCGOG00000011565) #31	ENSCGOG00000011569 #33	NDUFA13 (ENSCGOG00000011572) #34	cirbpa (ENSCGOG00000011580) ##35
Pike perch	MODERN SPECIES	55	camk2n1a (ENSSLUG00000001774) #8	ENSSLUG00000001781	alg3 (ENSSLUG00000001807) #10	ENSSLUG00000001828 #11	ENSSLUG00000001855 #12	chrng (ENSSLUG00000001916) #13	ENSSLUG00000001969 #14	eif4e2 (ENSSLUG00000001984) #15	CAPN10 (ENSSLUG00000002030) #16	ENSSLUG00000002145 #17	ENSSLUG00000002160 #18	ENSSLUG00000002175	CAMSAP2 (ENSSLUG00000002176) #24	WDR47 (ENSSLUG00000002196) #19	ENSSLUG00000002267 #20	FNDC7 (ENSSLUG00000002320) #22	prpf38b (ENSSLUG00000002339) #25	ENSSLUG00000002343	eeig2a (ENSSLUG00000002347) #26	ENSSLUG00000002365 #27	PRKAB2 (ENSSLUG00000002467)	ENSSLUG00000002482 #28	ENSSLUG00000002486 #28	tm6sf2a (ENSSLUG00000002494) #29	ENSSLUG00000002517 #30	SLC25A42 (ENSSLUG00000002534)	ARMC6 (ENSSLUG00000002542) #31	MAU2 (ENSSLUG00000002586) #32	ENSSLUG00000002750 #33	NDUFA13 (ENSSLUG00000002790) #34	ENSSLUG00000002796 ##35
Ballan wrasse	MODERN SPECIES	63	EEF1AKMT4 (ENSLBEG00000023489) #7	camk2n1a (ENSLBEG00000023506) #8	mul1a (ENSLBEG00000023524) #9	alg3 (ENSLBEG00000023556) #10	ENSLBEG00000023605 #11	ENSLBEG00000023710 #12	chrng (ENSLBEG00000023769) #13	ENSLBEG00000023843 #14	eif4e2 (ENSLBEG00000023869) #15	CAPN10 (ENSLBEG00000023913) #16	ENSLBEG00000023970 #18	CAMSAP2 (ENSLBEG00000024082) #24	WDR47 (ENSLBEG00000024263) #19	ENSLBEG00000024300 #20	ENSLBEG00000024332	FNDC7 (ENSLBEG00000024371) #22	ENSLBEG00000024436	ENSLBEG00000024463	prpf38b (ENSLBEG00000024500) #25	eeig2a (ENSLBEG00000024567) #26	ENSLBEG00000024625 #27	PRKAB2 (ENSLBEG00000024664)	ENSLBEG00000024763 ##28	ENSLBEG00000024955	tm6sf2a (ENSLBEG00000024990) #29	ENSLBEG00000025028 #30	ENSLBEG00000025058 #30	SLC25A42 (ENSLBEG00000025113)	ARMC6 (ENSLBEG00000025147) #31	GATAD2A (ENSLBEG00000025177) #33	NDUFA13 (ENSLBEG00000000263) #34
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT00940000172979 #18	ENSGT01070000253760.b.a.a.a.b.d.a.b.b	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Fugu	MODERN SPECIES	14	ENSTRUG00000014293 #11	ENSTRUG00000027659 #12	chrng (ENSTRUG00000014376) #13	ENSTRUG00000030012 #14	eif4e2 (ENSTRUG00000014558) #15	CAPN10 (ENSTRUG00000014594) #16	ENSTRUG00000025654 #18	ENSTRUG00000002476	ENSTRUG00000000561	ENSTRUG00000033431	ticam (ENSTRUG00000014679)	CAMSAP2 (ENSTRUG00000014682) #24	WDR47 (ENSTRUG00000014812) #19	ENSTRUG00000014852 #20	ENSTRUG00000031126 #21	FNDC7 (ENSTRUG00000014913) #22	ENSTRUG00000032528	ENSTRUG00000033150	ENSTRUG00000011765	eeig2a (ENSTRUG00000011642) #26	ENSTRUG00000011259 #27	PRKAB2 (ENSTRUG00000023478)	ENSTRUG00000010846 ##28	ENSTRUG00000029868 ##28	ENSTRUG00000023574 #28	tm6sf2a (ENSTRUG00000010612) #29	ENSTRUG00000010430 #30	SLC25A42 (ENSTRUG00000010352)	ARMC6 (ENSTRUG00000010295) #31	ENSTRUG00000010208 #33	NDUFA13 (ENSTRUG00000031395) #34
Tetraodon	MODERN SPECIES	6	ENSTNIG00000015285	ENSTNIG00000015286	camk2n1a (ENSTNIG00000015287) #8	mul1a (ENSTNIG00000015288) #9	alg3 (ENSTNIG00000015289) #10	ENSTNIG00000015290 #11	ENSTNIG00000015291 #12	chrng (ENSTNIG00000015292) #13	ENSTNIG00000015293 #14	CAPN10 (ENSTNIG00000015294) #16	ENSTNIG00000003852	ticam1 (ENSTNIG00000001099)	CAMSAP2 (ENSTNIG00000015295) #24	WDR47 (ENSTNIG00000015296) #19	ENSTNIG00000015297 #20	FNDC7 (ENSTNIG00000015298) #22	ENSTNIG00000015299	eeig2a (ENSTNIG00000015300) #26	ENSTNIG00000015301 #27	PRKAB2 (ENSTNIG00000015302)	ENSTNIG00000015303 #28	tm6sf2a (ENSTNIG00000015304) #29	ENSTNIG00000015305 #30	SLC25A42 (ENSTNIG00000015306)	ARMC6 (ENSTNIG00000015307) #31	GATAD2A (ENSTNIG00000015308) #33	NDUFA13 (ENSTNIG00000015309) #34	cirbpa (ENSTNIG00000000450) #35	CBARP (ENSTNIG00000015310) #37	stk11 (ENSTNIG00000015311)	SUGP1 (ENSTNIG00000015312)
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b
Carangaria	ANCESTRAL SPECIES	5	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	12	ENSCSEG00000014706 #30	tm6sf2a (ENSCSEG00000014728) #29	ENSCSEG00000014742 #12	chrng (ENSCSEG00000014762) #13	eif4e2 (ENSCSEG00000014782) #15	ENSCSEG00000014798 #14	CAPN10 (ENSCSEG00000014809) #16	ENSCSEG00000014826 #17	ENSCSEG00000014844 #18	ticam1 (ENSCSEG00000014878)	CAMSAP2 (ENSCSEG00000014885) #24	WDR47 (ENSCSEG00000014922) #19	ENSCSEG00000014966 #20	ENSCSEG00000014993 #21	ENSCSEG00000015018 #22	ENSCSEG00000015022 #22	ENSCSEG00000015030	eeig2a (ENSCSEG00000015040) #26	ENSCSEG00000015069 #27	PRKAB2 (ENSCSEG00000015082)	ENSCSEG00000015091 ##28	ENSCSEG00000015096	ENSCSEG00000015108 ##28	ENSCSEG00000015573	ENSCSEG00000015576 #11	alg3 (ENSCSEG00000015600) #10	mul1a (ENSCSEG00000015611) #9	camk2n1a (ENSCSEG00000015619) #8	ENSCSEG00000015622 #7	MAP6D1 (ENSCSEG00000015627)	ENSCSEG00000015638
Tongue sole	MODERN SPECIES	12	ENSCSEG00000014696	ENSCSEG00000014706 #30	tm6sf2a (ENSCSEG00000014728) #29	ENSCSEG00000014742 #12	chrng (ENSCSEG00000014762) #13	eif4e2 (ENSCSEG00000014782) #15	ENSCSEG00000014798 #14	CAPN10 (ENSCSEG00000014809) #16	ENSCSEG00000014826 #17	ENSCSEG00000014844 #18	ticam1 (ENSCSEG00000014878)	CAMSAP2 (ENSCSEG00000014885) #24	WDR47 (ENSCSEG00000014922) #19	ENSCSEG00000014966 #20	ENSCSEG00000014993 #21	ENSCSEG00000015018 #22	ENSCSEG00000015022 #22	ENSCSEG00000015030	eeig2a (ENSCSEG00000015040) #26	ENSCSEG00000015069 #27	PRKAB2 (ENSCSEG00000015082)	ENSCSEG00000015091 ##28	ENSCSEG00000015096	ENSCSEG00000015108 ##28	ENSCSEG00000015573	ENSCSEG00000015576 #11	alg3 (ENSCSEG00000015600) #10	mul1a (ENSCSEG00000015611) #9	camk2n1a (ENSCSEG00000015619) #8	ENSCSEG00000015622 #7	MAP6D1 (ENSCSEG00000015627)
Turbot	MODERN SPECIES	19	mul1a (ENSSMAG00000037111) #9	alg3 (ENSSMAG00000001355) #10	ENSSMAG00000001387 #11	ENSSMAG00000001435 #12	chrng (ENSSMAG00000001451) #13	ENSSMAG00000001468 #14	eif4e2 (ENSSMAG00000001480) #15	ENSSMAG00000001494 #16	ENSSMAG00000001522 #18	ENSSMAG00000037126	ENSSMAG00000001531	ENSSMAG00000001542 #24	ENSSMAG00000001614 #19	ENSSMAG00000001681 #20	ENSSMAG00000001709 #21	ENSSMAG00000001716 #22	ENSSMAG00000023482	ENSSMAG00000035900	prpf38b (ENSSMAG00000001776) #25	ENSSMAG00000001781	eeig2a (ENSSMAG00000001814) #26	ENSSMAG00000001862 #27	ENSSMAG00000001888	ENSSMAG00000001960 #28	ENSSMAG00000002195 #29	ENSSMAG00000002220 #30	ENSSMAG00000034798	ENSSMAG00000002268 #31	ENSSMAG00000002301 #33	ENSSMAG00000002373 #34	ENSSMAG00000002412 #35
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32
Seriola	ANCESTRAL SPECIES		ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32
Greater amberjack	MODERN SPECIES	83	mul1a (ENSSDUG00000017607) #9	alg3 (ENSSDUG00000017567) #10	ENSSDUG00000017462 #11	ENSSDUG00000017122 #12	chrng (ENSSDUG00000017078) #13	ENSSDUG00000017060 #14	eif4e2 (ENSSDUG00000017033) #15	CAPN10 (ENSSDUG00000017010) #16	ENSSDUG00000016993 #17	ENSSDUG00000016970 #18	ticam1 (ENSSDUG00000016955)	CAMSAP2 (ENSSDUG00000016904) #24	WDR47 (ENSSDUG00000016816) #19	ENSSDUG00000016774 #20	ENSSDUG00000016710 #21	FNDC7 (ENSSDUG00000016648) #22	ENSSDUG00000016601	prpf38b (ENSSDUG00000016590) #25	ENSSDUG00000016574	eeig2a (ENSSDUG00000016534) #26	ENSSDUG00000016514 #27	PRKAB2 (ENSSDUG00000016500)	ENSSDUG00000016490	ENSSDUG00000016399 ##28	ENSSDUG00000016383	tm6sf2a (ENSSDUG00000016368) #29	ENSSDUG00000016331 #30	SLC25A42 (ENSSDUG00000016297)	ARMC6 (ENSSDUG00000016271) #31	MAU2 (ENSSDUG00000016192) #32	ENSSDUG00000016139 #33
Yellowtail amberjack	MODERN SPECIES	2718			ENSSLDG00000023224 #11	ENSSLDG00000023230 #12	chrng (ENSSLDG00000023245) #13	ENSSLDG00000023259 #14	eif4e2 (ENSSLDG00000023267) #15	CAPN10 (ENSSLDG00000023280) #16	ENSSLDG00000023287 #17	ENSSLDG00000023294 #18	ticam1 (ENSSLDG00000023309)	CAMSAP2 (ENSSLDG00000023313) #24	WDR47 (ENSSLDG00000023321) #19	ENSSLDG00000023357 #20	ENSSLDG00000023382	FNDC7 (ENSSLDG00000023394) #22	ENSSLDG00000023419	ENSSLDG00000023487	eeig2a (ENSSLDG00000023525) #26	ENSSLDG00000023551 #27	PRKAB2 (ENSSLDG00000023583)	ENSSLDG00000023596 #28	ENSSLDG00000023611 #28	ENSSLDG00000023656	tm6sf2a (ENSSLDG00000023660) #29	ENSSLDG00000023679 #30
Barramundi perch	MODERN SPECIES	69	alg3 (ENSLCAG00010015808) #10	ENSLCAG00010015813 #11	ENSLCAG00010015823 #12	chrng (ENSLCAG00010015835) #13	ENSLCAG00010015859 #14	eif4e2 (ENSLCAG00010015868) #15	CAPN10 (ENSLCAG00010015890) #16	ENSLCAG00010015903 #17	ENSLCAG00010015924 #18	ENSLCAG00010015926	ENSLCAG00010015930	CAMSAP2 (ENSLCAG00010015934) #24	WDR47 (ENSLCAG00010015940) #19	ENSLCAG00010015962 #20	ENSLCAG00010015979 #21	ENSLCAG00010015987 #22	ENSLCAG00010015990	ENSLCAG00010015995	eeig2a (ENSLCAG00010016000) #26	ENSLCAG00010016001 #27	PRKAB2 (ENSLCAG00010016009)	ENSLCAG00010016017 #28	tm6sf2a (ENSLCAG00010016045) #29	ENSLCAG00010016074 #30	SLC25A42 (ENSLCAG00010016133)	ARMC6 (ENSLCAG00010016141) #31	MAU2 (ENSLCAG00010016175) #32	ENSLCAG00010016216	GATAD2A (ENSLCAG00010016218) #33	NDUFA13 (ENSLCAG00010016224) #34	cirbpa (ENSLCAG00010016235) #35
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35	ENSGT00510000049027.d #36
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35	ENSGT00510000049027.d #36
Climbing perch	MODERN SPECIES	8	mul1a (ENSATEG00000013828) #9	alg3 (ENSATEG00000013842) #10	ENSATEG00000013881 #11	ENSATEG00000013945 #12	chrng (ENSATEG00000014069) #13	ENSATEG00000014112 #14	eif4e2 (ENSATEG00000014136) #15	ENSATEG00000014151 #16	ENSATEG00000014177 #17	ENSATEG00000014191 #18	ENSATEG00000026404	ENSATEG00000014253 #24	ENSATEG00000014307 #19	ENSATEG00000014349 #20	ENSATEG00000029889 #21	ENSATEG00000014423 #22	ENSATEG00000026802	ENSATEG00000014471	ENSATEG00000014482	eeig2a (ENSATEG00000014496) #26	ENSATEG00000014532 #27	ENSATEG00000014553	ENSATEG00000014584 #28	ENSATEG00000014645 #29	ENSATEG00000027036	ENSATEG00000014719 #30	ENSATEG00000014746	ENSATEG00000014769 #31	MAU2 (ENSATEG00000014807) #32	ENSATEG00000014918 #33	NDUFA13 (ENSATEG00000014957) #34
Siamese fighting fish	MODERN SPECIES	8	camk2n1a (ENSBSLG00000019901) #8	mul1a (ENSBSLG00000019885) #9	alg3 (ENSBSLG00000019827) #10	ENSBSLG00000019803 #11	ENSBSLG00000019514 #12	chrng (ENSBSLG00000019282) #13	eif4e2 (ENSBSLG00000019206) #15	CAPN10 (ENSBSLG00000019158) #16	ENSBSLG00000019114 #17	ENSBSLG00000019104 #18	ENSBSLG00000019091	CAMSAP2 (ENSBSLG00000018969) #24	WDR47 (ENSBSLG00000018798) #19	ENSBSLG00000018443 #20	ENSBSLG00000018415 #21	FNDC7 (ENSBSLG00000018344) #22	ENSBSLG00000018330	ENSBSLG00000018277	ENSBSLG00000018238	eeig2a (ENSBSLG00000018184) #26	ENSBSLG00000017453 #27	PRKAB2 (ENSBSLG00000017381)	ENSBSLG00000017114 #28	tm6sf2a (ENSBSLG00000017014) #29	ENSBSLG00000016783 #30	SLC25A42 (ENSBSLG00000016665)	ARMC6 (ENSBSLG00000016599) #31	MAU2 (ENSBSLG00000015435) #32	GATAD2A (ENSBSLG00000015403) #33	NDUFA13 (ENSBSLG00000015368) #34	cirbpa (ENSBSLG00000015274) #35
Zig-zag eel	MODERN SPECIES	8	mul1a (ENSMAMG00000011097) #9	alg3 (ENSMAMG00000011087) #10	ENSMAMG00000011014 #11	ENSMAMG00000025306 #12	chrng (ENSMAMG00000010930) #13	ENSMAMG00000010918 #14	eif4e2 (ENSMAMG00000010881) #15	ENSMAMG00000010866 #16	ENSMAMG00000010811 #17	ENSMAMG00000010801 #18	ENSMAMG00000010796	ENSMAMG00000010789 #24	ENSMAMG00000010748 #19	ENSMAMG00000010724 #20	ENSMAMG00000010720	ENSMAMG00000010705 #22	prpf38b (ENSMAMG00000010641) #25	eeig2a (ENSMAMG00000010629) #26	ENSMAMG00000010596 #27	ENSMAMG00000010575	ENSMAMG00000010535 #28	ENSMAMG00000010517 #28	ENSMAMG00000010423 #29	ENSMAMG00000010386 #30	ENSMAMG00000025704	ENSMAMG00000010309 #31	MAU2 (ENSMAMG00000010226) #32	ENSMAMG00000010196 #33	NDUFA13 (ENSMAMG00000010191) #34	ENSMAMG00000010168 #35	ENSMAMG00000010150 #36
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00980000198596.B	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00390000004940.a.a #8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Mangrove rivulus	MODERN SPECIES	64	mul1a (ENSKMAG00000004925) #9	alg3 (ENSKMAG00000004944) #10	ENSKMAG00000004977 #11	ENSKMAG00000005044 #12	chrng (ENSKMAG00000005141) #13	ENSKMAG00000005193 #14	eif4e2 (ENSKMAG00000005213) #15	CAPN10 (ENSKMAG00000005234) #16	ENSKMAG00000005256 #17	ENSKMAG00000005271 #18	ENSKMAG00000005316	ENSKMAG00000005325 #24	WDR47 (ENSKMAG00000005351) #19	ENSKMAG00000005414 #20	ENSKMAG00000005466	FNDC7 (ENSKMAG00000005479) #22	ENSKMAG00000005509	ENSKMAG00000005540	eeig2a (ENSKMAG00000005565) #26	ENSKMAG00000005592 #27	PRKAB2 (ENSKMAG00000005628)	ENSKMAG00000005672 ##28	ENSKMAG00000005722	tm6sf2a (ENSKMAG00000005730) #29	ENSKMAG00000005755 #30	SLC25A42 (ENSKMAG00000005803)	ARMC6 (ENSKMAG00000005828) #31	ENSKMAG00000005852 #33	NDUFA13 (ENSKMAG00000005877) #34	cirbpa (ENSKMAG00000005905) #35	ENSKMAG00000005936 #36
Turquoise killifish	MODERN SPECIES	1618	MUL1A (ENSNFUG00015022369) #9	ALG3 (ENSNFUG00015022371) #10	ENSNFUG00015022384 #11	ENSNFUG00015022387 #12	chrng (ENSNFUG00015022399) #13	ENSNFUG00015022581 #14	EIF4E2 (ENSNFUG00015022585) #15	CAPN10 (ENSNFUG00015022595) #16	ENSNFUG00015022611	ENSNFUG00015022614 #18	TICAM1 (ENSNFUG00015022631)	CAMSAP2 (ENSNFUG00015022638) #24	WDR47 (ENSNFUG00015022696) #19	ENSNFUG00015022712 #21	ENSNFUG00015022723	ENSNFUG00015022732 #22	ENSNFUG00015022740	ENSNFUG00015022743	PRPF38B (ENSNFUG00015022748)	eeig2a (ENSNFUG00015022753) #26	ENSNFUG00015022773 #27	PRKAB2 (ENSNFUG00015022831)	ENSNFUG00015022854 ##28	ENSNFUG00015022904 #28	tm6sf2a (ENSNFUG00015022911) #29	ENSNFUG00015022933 #30	SLC25A42 (ENSNFUG00015022950)	ARMC6 (ENSNFUG00015022963) #31	GATAD2A (ENSNFUG00015022969) #33	NDUFA13 (ENSNFUG00015022975) #34	CIRBP (ENSNFUG00015022982) #35
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308.b	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Poecilia	ANCESTRAL SPECIES	16	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308.b	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
NAME_6	ANCESTRAL SPECIES	122	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308.b	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00390000004708	ENSGT00390000001810.b	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a
Amazon molly	MODERN SPECIES	465	ENSPFOG00000005946 #7	camk2n1a (ENSPFOG00000005933) #8	mul1a (ENSPFOG00000005872) #9	alg3 (ENSPFOG00000005769) #10	ENSPFOG00000005629 #11	ENSPFOG00000005526 #12	chrng (ENSPFOG00000005367) #13	ENSPFOG00000005344 #14	eif4e2 (ENSPFOG00000005221) #15	CAPN10 (ENSPFOG00000005083) #16	ENSPFOG00000005075	ENSPFOG00000005071	CAMSAP2 (ENSPFOG00000004530) #24	WDR47 (ENSPFOG00000004391) #19	ENSPFOG00000004266 #20	FNDC7 (ENSPFOG00000004117) #22	ENSPFOG00000004025	eeig2a (ENSPFOG00000003800) #26	ENSPFOG00000003607 #27	PRKAB2 (ENSPFOG00000003532)	dnai7 (ENSPFOG00000003303)	lyrm5a (ENSPFOG00000003285)	ENSPFOG00000002770 #28
Sailfin molly	MODERN SPECIES	2012													WDR47 (ENSPLAG00000019718) #19	ENSPLAG00000019737 #20	ENSPLAG00000019749 #21	FNDC7 (ENSPLAG00000019832) #22	ENSPLAG00000019842
Guppy	MODERN SPECIES	447	alg3 (ENSPREG00000016252) #10	ENSPREG00000016232 #11	ENSPREG00000016176 #12	ENSPREG00000016214	chrng (ENSPREG00000016151) #13	eif4e2 (ENSPREG00000016132) #15	ENSPREG00000016090 #14	CAPN10 (ENSPREG00000016052) #16	ENSPREG00000016032	ENSPREG00000016013	ENSPREG00000016009	CAMSAP2 (ENSPREG00000015956) #24	WDR47 (ENSPREG00000015872) #19	ENSPREG00000015791 #20	ENSPREG00000015727 #21	FNDC7 (ENSPREG00000015691) #22	ENSPREG00000015669 #23	ENSPREG00000015635	ENSPREG00000015599	eeig2a (ENSPREG00000015585) #26	ENSPREG00000015554 #27	PRKAB2 (ENSPREG00000015532)	lyrm5a (ENSPREG00000015524)	dnai7 (ENSPREG00000015512)	ENSPREG00000015462 ##28	ENSPREG00000015434	tm6sf2a (ENSPREG00000015416) #29	ENSPREG00000015333 #30	brinp2 (ENSPREG00000015303)	klhl20 (ENSPREG00000015265)	lhx8a (ENSPREG00000015235)
Platyfish	MODERN SPECIES	20	gnl2 (ENSXMAG00000026406)	ENSXMAG00000022007	ENSXMAG00000029658 #12	ENSXMAG00000027343	chrng (ENSXMAG00000008565) #13	ENSXMAG00000023993 #14	eif4e2 (ENSXMAG00000008587) #15	ENSXMAG00000027659	CAPN10 (ENSXMAG00000008593) #16	ENSXMAG00000029151	ENSXMAG00000022282	CAMSAP2 (ENSXMAG00000008609) #24	WDR47 (ENSXMAG00000008623) #19	ENSXMAG00000008634 #20	ENSXMAG00000023688 #21	FNDC7 (ENSXMAG00000008647) #22	ENSXMAG00000023831	eeig2a (ENSXMAG00000008664) #26	ENSXMAG00000008670 #27	PRKAB2 (ENSXMAG00000029888)	dnai7 (ENSXMAG00000008690)	lyrm5a (ENSXMAG00000025461)	ENSXMAG00000029954 ##28	ENSXMAG00000025099	ENSXMAG00000025627 ##28	ENSXMAG00000025599	tm6sf2a (ENSXMAG00000012807) #29	ENSXMAG00000022489 #30	SLC25A42 (ENSXMAG00000019341)	ARMC6 (ENSXMAG00000019340) #31	ENSXMAG00000019339 #33
NAME_4	ANCESTRAL SPECIES	9	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308.c	ENSGT00940000177308.d	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00390000004708	ENSGT00390000001810.b	ENSGT00950000183190.a.b.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Sheepshead minnow	MODERN SPECIES	486				ENSCVAG00000005918 #11	ENSCVAG00000005810 #12	chrng (ENSCVAG00000005777) #13	ENSCVAG00000005734 #14	eif4e2 (ENSCVAG00000005720) #15	CAPN10 (ENSCVAG00000005699) #16	ENSCVAG00000005683	ENSCVAG00000005677	ENSCVAG00000000166	CAMSAP2 (ENSCVAG00000005668) #24	WDR47 (ENSCVAG00000005653) #19	ENSCVAG00000005614 #20	FNDC7 (ENSCVAG00000005565) #22	prpf38b (ENSCVAG00000005557) #25	ENSCVAG00000005543	eeig2a (ENSCVAG00000005517) #26	ENSCVAG00000005462 #27	PRKAB2 (ENSCVAG00000005412)	dnai7 (ENSCVAG00000005382)	lyrm5a (ENSCVAG00000005184)	ENSCVAG00000005174	ENSCVAG00000005162 ##28	ENSCVAG00000005071	tm6sf2a (ENSCVAG00000005061) #29	ENSCVAG00000000943 #30	SLC25A42 (ENSCVAG00000005020)	ARMC6 (ENSCVAG00000004995) #31	ENSCVAG00000004965 #33
Mummichog	MODERN SPECIES	2335					chrng (ENSFHEG00000003068) #13	eif4e2 (ENSFHEG00000003036) #15	CAPN10 (ENSFHEG00000003013) #16	ENSFHEG00000003004	ENSFHEG00000003002	ENSFHEG00000002980	ENSFHEG00000002973	ENSFHEG00000002948	ENSFHEG00000002941 #24	WDR47 (ENSFHEG00000002929) #19	ENSFHEG00000002898 #20	ENSFHEG00000002889 #22	ENSFHEG00000000082 #23	ENSFHEG00000002879 #23	ENSFHEG00000002875	prpf38b (ENSFHEG00000002861) #25	eeig2a (ENSFHEG00000002856) #26	ENSFHEG00000002845 #27	PRKAB2 (ENSFHEG00000002805)	dnai7 (ENSFHEG00000002790)	lyrm5a (ENSFHEG00000002767)	ENSFHEG00000002757 ##28	ENSFHEG00000002740 ##28	ENSFHEG00000002675	tm6sf2a (ENSFHEG00000002667) #29	ENSFHEG00000002659 #30	ENSFHEG00000002640 #30
Oryzias	ANCESTRAL SPECIES	12	ENSGT00390000004940.a.a #8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000169454 #25	ENSGT00980000198596.B	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000164140 #7	ENSGT00390000004940.a.a #8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.B	ENSGT00980000198596.A	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35	ENSGT00510000049027.d #36
Javanese ricefish	MODERN SPECIES	8	MAP6D1 (ENSOJAG00000010297)	ENSOJAG00000010286 #7	camk2n1a (ENSOJAG00000010272) #8	mul1a (ENSOJAG00000010226) #9	alg3 (ENSOJAG00000010136) #10	ENSOJAG00000010092 #11	ENSOJAG00000010076 #12	eif4e2 (ENSOJAG00000009914) #15	ENSOJAG00000009603 #16	ENSOJAG00000009522 #17	ENSOJAG00000009508 #18	ticam1 (ENSOJAG00000009505)	WDR47 (ENSOJAG00000009397) #19	ENSOJAG00000009117 #20	ENSOJAG00000024044 #21	FNDC7 (ENSOJAG00000024041) #22	prpf38b (ENSOJAG00000024035) #25	ENSOJAG00000024037	eeig2a (ENSOJAG00000024033) #26	ENSOJAG00000024021 #27	PRKAB2 (ENSOJAG00000024018)	tm6sf2a (ENSOJAG00000024008) #29	ENSOJAG00000024005 #30	ARMC6 (ENSOJAG00000023996) #31	ENSOJAG00000023993 #33	NDUFA13 (ENSOJAG00000023992) #34	cirbpa (ENSOJAG00000023991) #35	ENSOJAG00000023990 #36	ENSOJAG00000023988 #37	stk11 (ENSOJAG00000023987)	SUGP1 (ENSOJAG00000023984)
Indian medaka	MODERN SPECIES	10	camk2n1a (ENSOMEG00000022663) #8	mul1a (ENSOMEG00000022659) #9	alg3 (ENSOMEG00000022647) #10	ENSOMEG00000022621 #11	ENSOMEG00000022578 #12	eif4e2 (ENSOMEG00000022558) #15	CAPN10 (ENSOMEG00000022530) #16	ENSOMEG00000000781 #17	ENSOMEG00000000589 #18	ENSOMEG00000022475 #18	ticam1 (ENSOMEG00000022468)	CAMSAP2 (ENSOMEG00000022446) #24	WDR47 (ENSOMEG00000022386) #19	ENSOMEG00000022313 #20	ENSOMEG00000022266 #21	FNDC7 (ENSOMEG00000022247) #22	ENSOMEG00000022197	ENSOMEG00000022118	ENSOMEG00000022050	EEIG2 (ENSOMEG00000021980) #26	ENSOMEG00000021913 #27	PRKAB2 (ENSOMEG00000021827)	ENSOMEG00000021795 ##28	ENSOMEG00000021771 ##28	ENSOMEG00000021725 ##28	tm6sf2a (ENSOMEG00000021701) #29	ENSOMEG00000021633 #30	SLC25A42 (ENSOMEG00000021554)	ARMC6 (ENSOMEG00000021531) #31	ENSOMEG00000021514 #33	NDUFA13 (ENSOMEG00000021487) #34
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00390000004940.a.a #8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Japanese Medaka HdrR	MODERN SPECIES	8	mul1a (ENSORLG00000023905) #9	alg3 (ENSORLG00000015764) #10	ENSORLG00000024329	ENSORLG00000015755 #11	ENSORLG00000015737 #12	ENSORLG00000023741 #14	eif4e2 (ENSORLG00000015731) #15	CAPN10 (ENSORLG00000015715) #16	ENSORLG00000028321 #18	ENSORLG00000030465 #17	ticam1 (ENSORLG00000021837)	ENSORLG00000015700 #24	WDR47 (ENSORLG00000015669) #19	ENSORLG00000015659 #20	ENSORLG00000025708 #21	FNDC7 (ENSORLG00000015635) #22	ENSORLG00000022270	ENSORLG00000015621	eeig2a (ENSORLG00000015603) #26	ENSORLG00000015576 #27	PRKAB2 (ENSORLG00000015550)	ENSORLG00000015537 ##28	ENSORLG00000029991 #28	tm6sf2a (ENSORLG00000015505) #29	ENSORLG00000015492 #30	ENSORLG00000023585	SLC25A42 (ENSORLG00000015475)	ARMC6 (ENSORLG00000015463) #31	ENSORLG00000015450 #33	NDUFA13 (ENSORLG00000015440) #34	cirbpa (ENSORLG00000015433) #35
Chinese medaka	MODERN SPECIES	1097	YEATS2 (ENSOSIG00000001049)	ENSOSIG00000001045 #7	camk2n1a (ENSOSIG00000001043) #8	mul1a (ENSOSIG00000001041) #9	alg3 (ENSOSIG00000001038) #10	ENSOSIG00000001031 #11	ENSOSIG00000001024 #12	ENSOSIG00000001021 #14	eif4e2 (ENSOSIG00000001014) #15	CAPN10 (ENSOSIG00000001009) #16	ENSOSIG00000000964 #17	ENSOSIG00000000958 #18	ticam1 (ENSOSIG00000000956)	CAMSAP2 (ENSOSIG00000000951) #24	WDR47 (ENSOSIG00000000934) #19	FNDC7 (ENSOSIG00000000866) #22	ENSOSIG00000000836 #23	ENSOSIG00000000828	ENSOSIG00000000804	eeig2a (ENSOSIG00000022325) #26	ENSOSIG00000022293 #27	PRKAB2 (ENSOSIG00000022272)	ENSOSIG00000022268 ##28	ENSOSIG00000022263 #28	tm6sf2a (ENSOSIG00000022260) #29	ENSOSIG00000022249 #30	SLC25A42 (ENSOSIG00000022218)	ARMC6 (ENSOSIG00000022208) #31	ENSOSIG00000022205 #33	NDUFA13 (ENSOSIG00000022202) #34	cirbpa (ENSOSIG00000022200) #35
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000177587	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00940000178918	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00940000178918	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00940000155779.a.a.k	ENSGT00940000155779.a.a.l	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g
Amphiprion	ANCESTRAL SPECIES	48	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00940000178918	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00940000180150	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32
Clown anemonefish	MODERN SPECIES	763				ENSAOCG00000012121 ##12	chrng (ENSAOCG00000012166) #13	ENSAOCG00000012197 #14	eif4e2 (ENSAOCG00000012215) #15	CAPN10 (ENSAOCG00000000749) #16	ENSAOCG00000012268 #17	ENSAOCG00000012285 #18	ENSAOCG00000012316	CAMSAP2 (ENSAOCG00000012397) #24	WDR47 (ENSAOCG00000012475) #19	ENSAOCG00000012566 #20	ENSAOCG00000012591	FNDC7 (ENSAOCG00000002076) #22	ENSAOCG00000012660 #23	prpf38b (ENSAOCG00000012675) #25	eeig2a (ENSAOCG00000012718) #26	ENSAOCG00000012764 #27	PRKAB2 (ENSAOCG00000002014)	ENSAOCG00000012811	ENSAOCG00000012840 ##28	ENSAOCG00000013067 ##28	ENSAOCG00000000824	ENSAOCG00000013117	tm6sf2a (ENSAOCG00000013225) #29
Orange clownfish	MODERN SPECIES	1	alg3 (ENSAPEG00000009923) #10	ENSAPEG00000009968 #11	ENSAPEG00000010142 #12	chrng (ENSAPEG00000010358) #13	ENSAPEG00000010498 #14	eif4e2 (ENSAPEG00000010529) #15	CAPN10 (ENSAPEG00000010557) #16	ENSAPEG00000010564 #17	ENSAPEG00000010587 #18	ENSAPEG00000010604	CAMSAP2 (ENSAPEG00000010609) #24	WDR47 (ENSAPEG00000010629) #19	ENSAPEG00000010709 #20	ENSAPEG00000010798	ENSAPEG00000010824	FNDC7 (ENSAPEG00000010841) #22	ENSAPEG00000010923	ENSAPEG00000010959	prpf38b (ENSAPEG00000010974) #25	eeig2a (ENSAPEG00000011008) #26	ENSAPEG00000011073 #27	PRKAB2 (ENSAPEG00000011137)	ENSAPEG00000011186	ENSAPEG00000011200 ##28	ENSAPEG00000011305	tm6sf2a (ENSAPEG00000011334) #29	ENSAPEG00000011552 #30	SLC25A42 (ENSAPEG00000011803)	ARMC6 (ENSAPEG00000011837) #31	MAU2 (ENSAPEG00000011872) #32	ENSAPEG00000011933 #33
Spiny chromis	MODERN SPECIES	478	ENSAPOG00000024113 #11	ENSAPOG00000024133 #12	ENSAPOG00000000927 #12	chrng (ENSAPOG00000024160) #13	ENSAPOG00000024193 #14	eif4e2 (ENSAPOG00000024218) #15	CAPN10 (ENSAPOG00000024229) #16	ENSAPOG00000024269 #17	ENSAPOG00000024282 #18	ENSAPOG00000024294	CAMSAP2 (ENSAPOG00000024317) #24	WDR47 (ENSAPOG00000024367) #19	ENSAPOG00000024395 #20	ENSAPOG00000024403	ENSAPOG00000024407	FNDC7 (ENSAPOG00000024417) #22
Bicolor damselfish	MODERN SPECIES	500				eif4e2 (ENSSPAG00000023256) #15	CAPN10 (ENSSPAG00000023250) #16	ENSSPAG00000023245 #17	ENSSPAG00000023241 #18	ENSSPAG00000023239 #17	ENSSPAG00000023234 #18	ENSSPAG00000023223	CAMSAP2 (ENSSPAG00000023212) #24	WDR47 (ENSSPAG00000023199) #19	ENSSPAG00000023187 #20	ENSSPAG00000023182	ENSSPAG00000023178	FNDC7 (ENSSPAG00000023175) #22	ENSSPAG00000023170	prpf38b (ENSSPAG00000023160) #25	eeig2a (ENSSPAG00000023156) #26	ENSSPAG00000023152 #27	PRKAB2 (ENSSPAG00000023145)	ENSSPAG00000023139 ##28	ENSSPAG00000023117 ##28	ENSSPAG00000023108	tm6sf2a (ENSSPAG00000023103) #29	ENSSPAG00000023096 #30	ENSSPAG00000023091 #30	SLC25A42 (ENSSPAG00000023080)	ARMC6 (ENSSPAG00000023069) #31	MAU2 (ENSSPAG00000023055) #32	ENSSPAG00000023048
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B	ENSGT00940000163706	ENSGT00980000198947	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B.a	ENSGT00940000177035.B.b.a.a	ENSGT00940000177035.B.b.b	ENSGT00940000163706	ENSGT00980000198947	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000162108.z.a	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B.a	ENSGT00940000177035.B.b.a.a	ENSGT00940000177035.B.b.b	ENSGT00940000163706	ENSGT00980000198947	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000162108.z.a	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B.a	ENSGT00940000177035.A.a	ENSGT00940000177035.B.b.a.a	ENSGT00940000177035.B.b.b	ENSGT00940000163706	ENSGT00980000198947	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000162108.z.a	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B.a	ENSGT00940000177035.A.a	ENSGT00940000177035.B.b.a.b	ENSGT00940000177035.B.b.a.a	ENSGT00940000177035.B.b.b	ENSGT00940000163706	ENSGT00980000198947	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000162108.z.a	ENSGT00940000164656.b.b.a.a.a.a.a.b.a	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
P. nyererei	MODERN SPECIES	299	ENSPNYG00000008213 #14	eif4e2 (ENSPNYG00000008188) #15	CAPN10 (ENSPNYG00000008169) #16	ENSPNYG00000008136 #17	ENSPNYG00000008109	ENSPNYG00000008082	ENSPNYG00000008066	ENSPNYG00000008042	ENSPNYG00000008019	ENSPNYG00000007963	ENSPNYG00000007935 #24	WDR47 (ENSPNYG00000007897) #19	ENSPNYG00000007837 #20	ENSPNYG00000007811	ENSPNYG00000007711	ENSPNYG00000007664 #22	ENSPNYG00000007648	prpf38b (ENSPNYG00000007625) #25	eeig2a (ENSPNYG00000007608) #26	ENSPNYG00000007577 #27	PRKAB2 (ENSPNYG00000007553)	ENSPNYG00000007470 #28	ENSPNYG00000007452	tm6sf2a (ENSPNYG00000007438) #29	ENSPNYG00000007405 #30	ENSPNYG00000007386 #30	SLC25A42 (ENSPNYG00000007327)	ARMC6 (ENSPNYG00000007304) #31	MAU2 (ENSPNYG00000007240) #32	ENSPNYG00000007222 #33	NDUFA13 (ENSPNYG00000007213) #34
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B.a	ENSGT00940000177035.A.a	ENSGT00940000177035.B.b.b	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000162108.z.a	ENSGT00940000164656.b.b.a.a.a.a.a.b.a.a	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Eastern happy	MODERN SPECIES	9	eif4e2 (ENSACLG00000001038) #15	CAPN10 (ENSACLG00000001087) #16	ENSACLG00000001099 #17	ENSACLG00000001175	ENSACLG00000001183	ENSACLG00000001202	ENSACLG00000001211	ENSACLG00000001216	ENSACLG00000001230	CAMSAP2 (ENSACLG00000001238) #24	WDR47 (ENSACLG00000001300) #19	ENSACLG00000001369 #20	ENSACLG00000001471 #21	ENSACLG00000001481	ENSACLG00000001558	ENSACLG00000001582 #22	ENSACLG00000001614	ENSACLG00000001620	prpf38b (ENSACLG00000001712) #25	eeig2a (ENSACLG00000001733) #26	ENSACLG00000001741 #27	PRKAB2 (ENSACLG00000001789)	ENSACLG00000001819	ENSACLG00000001825 ##28	ENSACLG00000001845 ##28	ENSACLG00000001860 ##28	tm6sf2a (ENSACLG00000001874) #29	ENSACLG00000001902 #30	SLC25A42 (ENSACLG00000001966)	ARMC6 (ENSACLG00000001997) #31	MAU2 (ENSACLG00000002022) #32
Zebra mbuna	MODERN SPECIES	1100	tal1 (ENSMZEG00005025511)	ENSMZEG00005025512	RC3H1 (ENSMZEG00005025514)	zgc:110366 (ENSMZEG00005025516)	extl2 (ENSMZEG00005025517)	parla (ENSMZEG00005025518)	fgf12a (ENSMZEG00005025520)	ENSMZEG00005025521	COL4A4 (ENSMZEG00005025522)	NYAP2 (ENSMZEG00005025523)	ENSMZEG00005025524	gpc1b (ENSMZEG00005025525)	EPHB1 (ENSMZEG00005025526)	ENSMZEG00005025527	ENSMZEG00005025529	ENSMZEG00005025531 #22	ENSMZEG00005025533	ENSMZEG00005025534	prpf38b (ENSMZEG00005025536) #25	eeig2a (ENSMZEG00005025539) #26	ENSMZEG00005025543 #27	PRKAB2 (ENSMZEG00005025544)	ENSMZEG00005025546 ##28	ENSMZEG00005025548 ##28	ENSMZEG00005025549	tm6sf2a (ENSMZEG00005025551) #29	ENSMZEG00005025554 #30	SLC25A42 (ENSMZEG00005025562)	ARMC6 (ENSMZEG00005025567) #31	MAU2 (ENSMZEG00005025570) #32	ENSMZEG00005025575 #33
Burton s mouthbrooder	MODERN SPECIES	306	ENSHBUG00000023093 #11	ENSHBUG00000023069 #12	chrng (ENSHBUG00000023051) #13	ENSHBUG00000022981 #14	eif4e2 (ENSHBUG00000022968) #15	CAPN10 (ENSHBUG00000022951) #16	ENSHBUG00000022940 #17	ENSHBUG00000022903	ENSHBUG00000022868	ENSHBUG00000022857	CAMSAP2 (ENSHBUG00000022846) #24	WDR47 (ENSHBUG00000022815) #19	ENSHBUG00000022748 #20	ENSHBUG00000022672 #21	ENSHBUG00000022656	FNDC7 (ENSHBUG00000022563) #22	ENSHBUG00000022551	prpf38b (ENSHBUG00000022496) #25	eeig2a (ENSHBUG00000022488) #26	ENSHBUG00000000689 #27	PRKAB2 (ENSHBUG00000022443)	ENSHBUG00000022430 ##28	ENSHBUG00000022408 ##28	ENSHBUG00000022373	tm6sf2a (ENSHBUG00000022363) #29	ENSHBUG00000022299 #30	SLC25A42 (ENSHBUG00000022280)	ARMC6 (ENSHBUG00000022237) #31	MAU2 (ENSHBUG00000001179) #32	GATAD2A (ENSHBUG00000022153) #33	NDUFA13 (ENSHBUG00000022075) #34
Lyretail cichlid	MODERN SPECIES	300	ENSNBRG00000018026 #12	chrng (ENSNBRG00000018459) #13	ENSNBRG00000018482 #14	eif4e2 (ENSNBRG00000018517) #15	ENSNBRG00000018661 #16	ENSNBRG00000018675 #17	ENSNBRG00000018693	ENSNBRG00000018724	ENSNBRG00000018787	ENSNBRG00000018795 #24	WDR47 (ENSNBRG00000018899) #19	ENSNBRG00000019030 #20	ENSNBRG00000019072	ENSNBRG00000019083	ENSNBRG00000019124	FNDC7 (ENSNBRG00000019144) #22	ENSNBRG00000019185 #23	prpf38b (ENSNBRG00000019212) #25	ENSNBRG00000019221	eeig2a (ENSNBRG00000019233) #26	ENSNBRG00000019259 #27	PRKAB2 (ENSNBRG00000019297)	ENSNBRG00000019338 ##28	ENSNBRG00000019352 ##28	ENSNBRG00000019372	tm6sf2a (ENSNBRG00000019383) #29	ENSNBRG00000019397 #30	ENSNBRG00000019423 #30	SLC25A42 (ENSNBRG00000019458)	ARMC6 (ENSNBRG00000019517) #31	MAU2 (ENSNBRG00000019564) #32
Nile tilapia	MODERN SPECIES	9	ENSONIG00000040812	ENSONIG00000027494	ENSONIG00000042340	ENSONIG00000038116	ENSONIG00000036148	CAMSAP2 (ENSONIG00000010092) #24	WDR47 (ENSONIG00000010099) #19	ENSONIG00000010101 #20	ENSONIG00000039920 #21	ENSONIG00000039582	ENSONIG00000029099	ENSONIG00000010116	ENSONIG00000042792	ENSONIG00000038055	ENSONIG00000029113	FNDC7 (ENSONIG00000010126) #22	ENSONIG00000033976	ENSONIG00000043125	prpf38b (ENSONIG00000028490)	eeig2a (ENSONIG00000010131) #26	ENSONIG00000010134 #27	PRKAB2 (ENSONIG00000010137)	ENSONIG00000010139 #28	tm6sf2a (ENSONIG00000010150) #29	ENSONIG00000010153 #30	ENSONIG00000030949	SLC25A42 (ENSONIG00000010158)	ARMC6 (ENSONIG00000010159) #31	MAU2 (ENSONIG00000010160) #32	ENSONIG00000010164 #33	ENSONIG00000038228
Midas cichlid	MODERN SPECIES	218																FNDC7 (ENSACIG00000016485) #22	prpf38b (ENSACIG00000016479) #25	ENSACIG00000016459	eeig2a (ENSACIG00000016446) #26	ENSACIG00000016423 #27	PRKAB2 (ENSACIG00000016406)	ENSACIG00000016395 ##28	ENSACIG00000016364 ##28	ENSACIG00000016359	tm6sf2a (ENSACIG00000016336) #29	ENSACIG00000016310 #30	SLC25A42 (ENSACIG00000016286)	ARMC6 (ENSACIG00000016270) #31	MAU2 (ENSACIG00000016238) #32	GATAD2A (ENSACIG00000016205) #33	NDUFA13 (ENSACIG00000016189) #34
Tiger tail seahorse	MODERN SPECIES	488	ZFYVE9 (ENSHCOG00000000943)	ENSHCOG00000000951 #11	ENSHCOG00000000955	ENSHCOG00000000957 #12	chrng (ENSHCOG00000000965) #13	ENSHCOG00000000967 #14	eif4e2 (ENSHCOG00000000972) #15	CAPN10 (ENSHCOG00000000983) #16	ENSHCOG00000000987	ENSHCOG00000000991	CAMSAP2 (ENSHCOG00000001003) #24	WDR47 (ENSHCOG00000001011) #19	ENSHCOG00000001015 #20	ENSHCOG00000001022 #20	ENSHCOG00000001026 #20	ENSHCOG00000001039 #22	ENSHCOG00000001060	ENSHCOG00000001068	ENSHCOG00000001071	eeig2a (ENSHCOG00000001076) #26	ENSHCOG00000001081 #27	PRKAB2 (ENSHCOG00000001092)	ENSHCOG00000001107 ##28	ENSHCOG00000001122 ##28	ENSHCOG00000001125	tm6sf2a (ENSHCOG00000001130) #29	ENSHCOG00000001136 #30	SLC25A42 (ENSHCOG00000001141)	ARMC6 (ENSHCOG00000001149) #31	ENSHCOG00000001156 #33	NDUFA13 (ENSHCOG00000001161) #34
Pinecone sodierfish	MODERN SPECIES	8	alg3 (ENSMMDG00005004904) #10	ENSMMDG00005004892 #11	ENSMMDG00005004857	ENSMMDG00005004836 #12	chrng (ENSMMDG00005004680) #13	ENSMMDG00005004650 #14	eif4e2 (ENSMMDG00005004433) #15	CAPN10 (ENSMMDG00005004403) #16	ENSMMDG00005004377 #17	ENSMMDG00005004360 #18	ticam1 (ENSMMDG00005004339)	CAMSAP2 (ENSMMDG00005004320) #24	WDR47 (ENSMMDG00005004142) #19	ENSMMDG00005004038 #20	ENSMMDG00005004012	ENSMMDG00005004004 #22	ENSMMDG00005003993	eeig2a (ENSMMDG00005003984) #26	ENSMMDG00005003812 #27	PRKAB2 (ENSMMDG00005003785)	ENSMMDG00005003779 #28	ENSMMDG00005003773 #28	ENSMMDG00005003769 #28	tm6sf2a (ENSMMDG00005003756) #29	ENSMMDG00005003744 #30	ENSMMDG00005003736 #30	SLC25A42 (ENSMMDG00005003719)	ARMC6 (ENSMMDG00005003707) #31	MAU2 (ENSMMDG00005003240) #32	GATAD2A (ENSMMDG00005003177) #33	NDUFA13 (ENSMMDG00005003172) #34
Cod	MODERN SPECIES	21	camk2n1a (ENSGMOG00000020254) #8	mul1a (ENSGMOG00000011977) #9	alg3 (ENSGMOG00000011983) #10	ENSGMOG00000011987 #11	ENSGMOG00000032491 #12	chrng (ENSGMOG00000012013) #13	eif4e2 (ENSGMOG00000012027) #15	ENSGMOG00000012019 #14	ENSGMOG00000012034 #16	ENSGMOG00000027576 #18	ENSGMOG00000035008	ENSGMOG00000033486 #24	ENSGMOG00000012060 #19	ENSGMOG00000012066 #20	ENSGMOG00000032782 #21	ENSGMOG00000012070 #22	ENSGMOG00000012080	eeig2a (ENSGMOG00000012081) #26	ENSGMOG00000012086 #27	ENSGMOG00000012088	ENSGMOG00000012093 #28	ENSGMOG00000012104 #29	ENSGMOG00000027592 #30	ENSGMOG00000012114	ENSGMOG00000012115 #31	MAU2 (ENSGMOG00000028080) #32	ENSGMOG00000012130 #33	NDUFA13 (ENSGMOG00000012133) #34	ENSGMOG00000012137 #35	ENSGMOG00000036457 #37	ENSGMOG00000012155
Protacanthopterygii	ANCESTRAL SPECIES	43	ENSGT00390000004940.a.a #8	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157155.z	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.a	ENSGT00980000198596.C	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g.c #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	239												ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b.b #24	ENSGT00940000155561.m.c #19	ENSGT00940000154667.b.b.f #20	ENSGT00390000004674.i.a.g #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B.j	ENSGT00940000156132.g.d #26	ENSGT00940000164927.b.f #27	ENSGT00940000159284.n	ENSGT00950000183190.a.a.b.c.a.d ##28	ENSGT00950000183190.a.a.a.a.a.b.m #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.j #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a.b #32	ENSGT00390000004097.a.f.c #33	ENSGT00390000000719.u.b #34	ENSGT00390000007227.b.ab
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1493													ENSHHUG00000036870 #24	WDR47 (ENSHHUG00000036865) #19	ENSHHUG00000036813 #20	ENSHHUG00000036811 #22	FNDC7 (ENSHHUG00000036804) #22	ENSHHUG00000036801	ENSHHUG00000036798	ENSHHUG00000036791	prpf38b (ENSHHUG00000036778) #25	eeig2a (ENSHHUG00000036770) #26	ENSHHUG00000036758 #27	ENSHHUG00000036747	ENSHHUG00000036679 ##28
Huchen	MODERN SPECIES	1493												ENSHHUG00000036870 #24	WDR47 (ENSHHUG00000036865) #19	ENSHHUG00000036813 #20	ENSHHUG00000036811 #22	FNDC7 (ENSHHUG00000036804) #22	ENSHHUG00000036801	ENSHHUG00000036798	ENSHHUG00000036791	prpf38b (ENSHHUG00000036778) #25	eeig2a (ENSHHUG00000036770) #26	ENSHHUG00000036758 #27	ENSHHUG00000036747	ENSHHUG00000036679 ##28
Salmoninae_a	ANCESTRAL SPECIES	51	ENSGT01030000235043	ENSGT00940000154345.a.f	ENSGT00530000063947.B.d	ENSGT00940000157930	ENSGT00940000164140.c.a #7	ENSGT00390000004940.a.a.a.a #8	ENSGT00390000012141.a.f #9	ENSGT00390000013904.d #10	ENSGT00940000157183.b.f #12	ENSGT00940000160041 #13	ENSGT01000000216279.b	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b.b #24	ENSGT00940000155561.m.c #19	ENSGT00940000154667.b.b.f #20	ENSGT00390000004674.i.a.g #22	ENSGT00940000157064.a.b.a	ENSGT01060000251220	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B.j	ENSGT00940000156132.g.d #26	ENSGT00940000164927.b.f #27	ENSGT00940000159284.n	ENSGT00950000183190.a.a.b.c.a.d ##28	ENSGT00950000183190.a.a.a.a.a.b.m #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.j #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a.b #32	ENSGT00390000004097.a.f.c #33
Salmo	ANCESTRAL SPECIES	21	ENSGT00940000154345.a.f	ENSGT00530000063947.B.d	ENSGT00940000157930.d	ENSGT00940000164140.d #7	ENSGT00390000004940.a.a.b #8	ENSGT00390000004940.a.a.a.a #8	ENSGT00390000012141.a.f #9	ENSGT00390000013904.d #10	ENSGT00940000157183.b.f #12	ENSGT00940000160041 #13	ENSGT01000000216279.b	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b.b #24	ENSGT00940000155561.m.c #19	ENSGT00940000154667.b.b.f #20	ENSGT00390000004674.i.a.g #22	ENSGT01060000251220	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B.j	ENSGT00940000156132.g.d #26	ENSGT00940000164927.b.f #27	ENSGT00940000159284.n	ENSGT00950000183190.a.a.a.a.a.b.m #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.j #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a.b #32	ENSGT00390000004097.a.f.c #33	ENSGT00390000000719.u.b #34	ENSGT00390000007227.b.ab
River trout	MODERN SPECIES	13	klhl24a (ENSSTUG00000028313)	ENSSTUG00000028300	ENSSTUG00000028298	acsm3 (ENSSTUG00000025129)	ENSSTUG00000025001 #7	camk2n1a (ENSSTUG00000024993) #8	mul1a (ENSSTUG00000024982) #9	alg3 (ENSSTUG00000024957) #10	ENSSTUG00000024941 #12	chrng (ENSSTUG00000023761) #13	ENSSTUG00000023720	ccl20a.3 (ENSSTUG00000023659)	ENSSTUG00000023608 #24	WDR47 (ENSSTUG00000023363) #19	ENSSTUG00000023287 #20	FNDC7 (ENSSTUG00000023266) #22	ENSSTUG00000044312	ENSSTUG00000044167	ENSSTUG00000044134	ENSSTUG00000044119 #26	ENSSTUG00000044106 #27	ENSSTUG00000044100	ENSSTUG00000044096	ENSSTUG00000044085 ##28	ENSSTUG00000044082 #28	tm6sf2a (ENSSTUG00000044061) #29	ENSSTUG00000044045 #30	SLC25A42 (ENSSTUG00000044005)	ARMC6 (ENSSTUG00000043983) #31	MAU2 (ENSSTUG00000043866) #32	GATAD2A (ENSSTUG00000043827) #33
Atlantic salmon	MODERN SPECIES	5	ece2a (ENSSSAG00000066389) #7	camk2n1a (ENSSSAG00000116553) #8	mul1a (ENSSSAG00000112020) #9	alg3 (ENSSSAG00000066412) #10	ENSSSAG00000066424 #12	chrng (ENSSSAG00000066464) #13	ENSSSAG00000093808	ENSSSAG00000101187	ENSSSAG00000100752	ENSSSAG00000118161	ENSSSAG00000066905	ENSSSAG00000103333	ENSSSAG00000066952 #19	ENSSSAG00000094221	ENSSSAG00000067308 #20	ENSSSAG00000113419 #22	ENSSSAG00000085927	ENSSSAG00000116574	ENSSSAG00000096933	ENSSSAG00000087485	ENSSSAG00000106026	ENSSSAG00000100583	ENSSSAG00000096219	ENSSSAG00000106181	ENSSSAG00000090039	ENSSSAG00000100120	ENSSSAG00000120973	ENSSSAG00000113206	ENSSSAG00000086756	ENSSSAG00000111068	ENSSSAG00000096021
Oncorhynchus	ANCESTRAL SPECIES	46	ENSGT01030000235043	ENSGT00940000154345.a.f	ENSGT00530000063947.B.d	ENSGT00940000157930	ENSGT00940000164140.c.a #7	ENSGT00390000004940.a.a.a.a #8	ENSGT00390000012141.a.f #9	ENSGT00390000013904.d #10	ENSGT00940000157183.b.f #12	ENSGT00940000160041 #13	ENSGT01000000216279.b	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b.b #24	ENSGT00940000155561.m.c #19	ENSGT00940000154667.b.b.f #20	ENSGT00390000004674.i.a.g #22	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT01060000251220	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B.j	ENSGT00940000156132.g.d #26	ENSGT00940000164927.b.f #27	ENSGT00940000159284.n	ENSGT00950000183190.a.a.b.c.a.d ##28	ENSGT00950000183190.a.a.a.a.a.b.m #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.j #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a.b #32
Oncorhynchus_a	ANCESTRAL SPECIES	56	ENSGT01030000235043	ENSGT00940000154345.a.f	ENSGT00530000063947.B.d	ENSGT00940000157930	ENSGT00940000164140.c.a #7	ENSGT00390000004940.a.a.a.a #8	ENSGT00390000012141.a.f #9	ENSGT00390000013904.d #10	ENSGT00940000157183.b.f #12	ENSGT00940000160041 #13	ENSGT01000000216279.b	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b.b #24	ENSGT00940000155561.m.c #19	ENSGT00940000154667.b.b.f #20	ENSGT00390000004674.i.a.g #22	ENSGT00940000157064.a.b.a	ENSGT01060000251220	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B.j	ENSGT00940000156132.g.d #26	ENSGT00940000164927.b.f #27	ENSGT00940000159284.n	ENSGT00950000183190.a.a.b.c.a.d ##28	ENSGT00950000183190.a.a.a.a.a.b.m #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.j #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a.b #32	ENSGT00390000004097.a.f.c #33
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005032224	KIF5B (ENSOTSG00005032102)	camk2n1a (ENSOTSG00005032101) #8	mul1a (ENSOTSG00005032100) #9	ENSOTSG00005032099	alg3 (ENSOTSG00005032098) #10	ENSOTSG00005032096 #12	chrng (ENSOTSG00005031652) #13	ENSOTSG00005031650	ENSOTSG00005031649	ccl20a.3 (ENSOTSG00005031648)	ccl20a.3 (ENSOTSG00005031647)	ENSOTSG00005031646 #24	WDR47 (ENSOTSG00005031580) #19	ENSOTSG00005031578 #20	FNDC7 (ENSOTSG00005031577) #22	ENSOTSG00005015714	ENSOTSG00005015712	ENSOTSG00005015710	ENSOTSG00005015709 #26	ENSOTSG00005015702 #27	ENSOTSG00005015701	ENSOTSG00005015700 ##28	ENSOTSG00005015699 ##28	tm6sf2a (ENSOTSG00005015698) #29	SLC25A42 (ENSOTSG00005015696)	ARMC6 (ENSOTSG00005015695) #31	MAU2 (ENSOTSG00005015650) #32	ENSOTSG00005015646 #33	NDUFA13 (ENSOTSG00005015643) #34	YJEFN3 (ENSOTSG00005015641)
Coho salmon	MODERN SPECIES	23	ENSOKIG00005027446	klhl24a (ENSOKIG00005027416)	ENSOKIG00005027401	acsm3 (ENSOKIG00005026508)	ENSOKIG00005026453 #7	camk2n1a (ENSOKIG00005026441) #8	mul1a (ENSOKIG00005026435) #9	alg3 (ENSOKIG00005026338) #10	chrng (ENSOKIG00005026165) #13	ENSOKIG00005026131	ccl20a.3 (ENSOKIG00005026114)	ccl20a.3 (ENSOKIG00005026106)	CAMSAP2 (ENSOKIG00005026079) #24	ENSOKIG00005026032 #20	WDR47 (ENSOKIG00005025924) #19	FNDC7 (ENSOKIG00005025860) #22	ENSOKIG00005025756	ENSOKIG00005025722	ENSOKIG00005025656	ENSOKIG00005025628 #26	ENSOKIG00005025418 #27	ENSOKIG00005025379	ENSOKIG00005025352 ##28	ENSOKIG00005025327 ##28	ENSOKIG00005025312 #28	tm6sf2a (ENSOKIG00005025267) #29	ENSOKIG00005025248 #30	ENSOKIG00005025211	SLC25A42 (ENSOKIG00005025113)	ARMC6 (ENSOKIG00005025081) #31	MAU2 (ENSOKIG00005024928) #32
Salmoninae	ANCESTRAL SPECIES	111	ENSGT00530000063947.B.c	ENSGT00390000004940.a.a.a.b #8	ENSGT00390000012141.a.e #9	ENSGT00390000013904.c #10	ENSGT00940000157096 #11	ENSGT00940000157155.z	ENSGT00940000157183.b.e #12	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01000000216279	ENSGT00950000182975.a.a.a.a.b.a #24	ENSGT00940000155561.m.d #19	ENSGT00940000154667.b.b.e #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a.h #22	ENSGT00730000111085.B.i	ENSGT00940000156132.g.c #26	ENSGT00940000164927.b.e #27	ENSGT00940000159284.m	ENSGT00950000183190.b ##28	ENSGT00950000183190.a.a.b.c.a.c ##28	ENSGT00950000183190.a.a.a.a.a.b.n #28	ENSGT00940000158649.a.b.i #30	ENSGT00390000012198.b.a.a #32	ENSGT00390000004097.a.f.d #33	ENSGT00390000000719.u.a #34	ENSGT00940000165622.i.a.a #35	ENSGT00940000163253.b.c.a.b.a
Huchen	MODERN SPECIES	231	ENSHHUG00000027485	camk2n1a (ENSHHUG00000027473) #8	mul1a (ENSHHUG00000027470) #9	alg3 (ENSHHUG00000027456) #10	ENSHHUG00000027436 #11	COPS7B (ENSHHUG00000027431)	ENSHHUG00000027416 #12	ENSHHUG00000027404 #14	eif4e2 (ENSHHUG00000027391) #15	CAPN10 (ENSHHUG00000027384) #16	ENSHHUG00000027376	CAMSAP2 (ENSHHUG00000027351) #24	WDR47 (ENSHHUG00000027345) #19	ENSHHUG00000027340 #20	ENSHHUG00000027324 #21	ENSHHUG00000027315 #22	ENSHHUG00000027304	eeig2a (ENSHHUG00000027298) #26	ENSHHUG00000027264 #27	PRKAB2 (ENSHHUG00000027255)	ENSHHUG00000027249 ##28	ENSHHUG00000027236 ##28	ENSHHUG00000027246 #28	ENSHHUG00000027216 #30	SLC25A42 (ENSHHUG00000027205)	MAU2 (ENSHHUG00000027118) #32	ENSHHUG00000027105 #33
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00530000063947.B.c	ENSGT00390000004940.a.a.a.b #8	ENSGT00390000012141.a.e #9	ENSGT00390000013904.c #10	ENSGT00940000157096 #11	ENSGT00940000157155.z	ENSGT00940000157183.b.e #12	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01000000216279.a	ENSGT00950000182975.a.a.a.a.b.a #24	ENSGT00940000155561.m.d #19	ENSGT00940000154667.b.b.e #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a.h #22	ENSGT00730000111085.B.i	ENSGT00940000156132.g.c #26	ENSGT00940000164927.b.e #27	ENSGT00940000159284.m	ENSGT00950000183190.b ##28	ENSGT00950000183190.a.a.b.c.a.c ##28	ENSGT00950000183190.a.a.a.a.a.b.n #28	ENSGT00940000158649.a.b.i #30	ENSGT00390000012198.b.a.a #32	ENSGT00390000004097.a.f.d #33	ENSGT00390000000719.u.a #34	ENSGT00940000165622.i.a.a #35	ENSGT00940000163253.b.c.a.b.a	ENSGT00940000156744.o.a.a	ENSGT00940000154621.a.b.b.b.e
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000157930.c	ENSGT00390000004940.a.a.a.b #8	ENSGT00390000012141.a.e #9	ENSGT00390000013904.c #10	ENSGT00940000157096 #11	ENSGT00940000157155.z	ENSGT00940000157183.b.e #12	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01000000216279.a	ENSGT00950000182975.a.a.a.a.b.a #24	ENSGT00940000155561.m.d #19	ENSGT00940000154667.b.b.e #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a.h #22	ENSGT00730000111085.B.i	ENSGT00940000156132.g.c #26	ENSGT00940000164927.b.e #27	ENSGT00940000159284.m	ENSGT00950000183190.a.a.b.c.a.c ##28	ENSGT00950000183190.a.a.a.a.a.b.n #28	ENSGT00940000158649.a.b.i #30	ENSGT00390000012198.b.a.a #32	ENSGT00390000004097.a.f.d #33	ENSGT00390000000719.u.a #34	ENSGT00940000165622.i.a.a #35	ENSGT00940000163253.b.c.a.b.a	ENSGT00940000156744.o.a.a	ENSGT00940000154621.a.b.b.b.e	ENSGT00940000165636.c
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000066146	mul1a (ENSSSAG00000093439) #9	alg3 (ENSSSAG00000066173) #10	ENSSSAG00000066182 #11	ENSSSAG00000066207	ENSSSAG00000066210 #12	ENSSSAG00000111019	IF4E2 (ENSSSAG00000066237) #15	capn10 (ENSSSAG00000066255) #16	CCL20 (ENSSSAG00000066280)	ENSSSAG00000109197	ENSSSAG00000066296 #24	ENSSSAG00000066550 #19	ENSSSAG00000066971 #20	ENSSSAG00000066980 #21	ENSSSAG00000066987 #22	ENSSSAG00000066998	eeig2a (ENSSSAG00000067008) #26	ENSSSAG00000094829 #27	ENSSSAG00000104897	ENSSSAG00000093507	ENSSSAG00000004356 #28	ENSSSAG00000067130 #30	ENSSSAG00000106809	MAU2 (ENSSSAG00000000382) #32	ENSSSAG00000000487 #33	NDUFA13 (ENSSSAG00000000515) #34	ENSSSAG00000000556 #35	ENSSSAG00000000616	ENSSSAG00000000720	ENSSSAG00000104907
Northern pike	MODERN SPECIES	2	camk2n1a (ENSELUG00000028787) #8	mul1a (ENSELUG00000011040) #9	alg3 (ENSELUG00000011033) #10	ENSELUG00000010990 #11	ENSELUG00000010923	ENSELUG00000010905 #12	chrng (ENSELUG00000010887) #13	ENSELUG00000010806 #14	eif4e2 (ENSELUG00000010780) #15	CAPN10 (ENSELUG00000010751) #16	ccl20 (ENSELUG00000010643)	CAMSAP2 (ENSELUG00000000381) #24	WDR47 (ENSELUG00000010569) #19	ENSELUG00000010535 #20	ENSELUG00000010503 #21	ENSELUG00000010480 #22	ENSELUG00000010438	ENSELUG00000010390	eeig2a (ENSELUG00000010383) #26	ENSELUG00000010370 #27	PRKAB2 (ENSELUG00000010339)	ENSELUG00000010302 #28	tm6sf2a (ENSELUG00000010244) #29	ENSELUG00000010199 #30	SLC25A42 (ENSELUG00000010136)	ARMC6 (ENSELUG00000010104) #31	MAU2 (ENSELUG00000010052) #32	GATAD2A (ENSELUG00000009982) #33	ndufa13 (ENSELUG00000009943) #34	cirbpa (ENSELUG00000009891) #35	ENSELUG00000009851
Otomorpha	ANCESTRAL SPECIES	164	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157155	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01040000240916	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.r	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27
Otophysi	ANCESTRAL SPECIES	446														ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.B.b	ENSGT00980000198596.A
Characiphysae	ANCESTRAL SPECIES	137	ENSGT00940000159760	ENSGT00940000158506	ENSGT00940000156952.a.b	ENSGT00950000183214.a.a.a.a	ENSGT00940000155270.j	ENSGT01090000259987.a.b.d.b.a.k	ENSGT00940000155003.e.a.e	ENSGT01090000259987.a.b.d.b.a.l	ENSGT00940000155003.f	ENSGT00940000165563.b	ENSGT00940000154801.m.b	ENSGT00950000182860.a.a.b.a.a.a.b	ENSGT00950000183208.B.f.b	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	12	Harbi1 (ENSIPUG00000016605)	ENSIPUG00000016596	ENSIPUG00000016556 ##28	PRKAB2 (ENSIPUG00000016527)	ENSIPUG00000016488	piwil1 (ENSIPUG00000016443)	sdhc (ENSIPUG00000016379)	cadm3 (ENSIPUG00000016275)	KIRREL (ENSIPUG00000016174)	epc1b (ENSIPUG00000016101)	arhgap12a (ENSIPUG00000016023)	ZEB1 (ENSIPUG00000015972)	ENSIPUG00000015923 #20	ENSIPUG00000015909	ENSIPUG00000015899 #22	ENSIPUG00000015889 #22	cactin (ENSIPUG00000015862)	sema4e (ENSIPUG00000015842)	sema4e (ENSIPUG00000015806)	stap2a (ENSIPUG00000015783)	sh3gl1a (ENSIPUG00000015655)	rorcb (ENSIPUG00000015615)	Lpar4 (ENSIPUG00000015602)	ENSIPUG00000015591	abhd17aa (ENSIPUG00000015519)	CDC34 (ENSIPUG00000015462)	ENSIPUG00000015436 #27	KCNJ9 (ENSIPUG00000015376)	ENSIPUG00000015358	SVIL (ENSIPUG00000015285)	ENSIPUG00000015262
Channel catfish	MODERN SPECIES	12	ENSIPUG00000016618	Harbi1 (ENSIPUG00000016605)	ENSIPUG00000016596	ENSIPUG00000016556 ##28	PRKAB2 (ENSIPUG00000016527)	ENSIPUG00000016488	piwil1 (ENSIPUG00000016443)	sdhc (ENSIPUG00000016379)	cadm3 (ENSIPUG00000016275)	KIRREL (ENSIPUG00000016174)	epc1b (ENSIPUG00000016101)	arhgap12a (ENSIPUG00000016023)	ZEB1 (ENSIPUG00000015972)	ENSIPUG00000015923 #20	ENSIPUG00000015909	ENSIPUG00000015899 #22	ENSIPUG00000015889 #22	cactin (ENSIPUG00000015862)	sema4e (ENSIPUG00000015842)	sema4e (ENSIPUG00000015806)	stap2a (ENSIPUG00000015783)	sh3gl1a (ENSIPUG00000015655)	rorcb (ENSIPUG00000015615)	Lpar4 (ENSIPUG00000015602)	ENSIPUG00000015591	abhd17aa (ENSIPUG00000015519)	CDC34 (ENSIPUG00000015462)	ENSIPUG00000015436 #27	KCNJ9 (ENSIPUG00000015376)	ENSIPUG00000015358	SVIL (ENSIPUG00000015285)
Characiphysae_b	ANCESTRAL SPECIES	111			ENSGT00940000156952.a.b	ENSGT00950000183214.a.a.a.a	ENSGT00940000155270.j	ENSGT01090000259987.a.b.d.b.a.k	ENSGT00940000155003.e.a.e	ENSGT01090000259987.a.b.d.b.a.l	ENSGT00940000155003.f	ENSGT00940000165563.b	ENSGT00940000154801.m.b	ENSGT00950000182860.a.a.b.a.a.a.b	ENSGT00950000183208.B.f.b	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00390000015219	ENSGT00390000003680.a.a.a	ENSGT00940000163212.A	ENSGT00940000157783	ENSGT01030000234556.a.b.b	ENSGT00940000159936	ENSGT00390000000566	ENSGT00940000159779.c	ENSGT00940000155795.e	ENSGT00940000155561.m #19	ENSGT00950000182975.a.a.a.a.b #24
Characoidei	ANCESTRAL SPECIES	63				ENSGT00940000156952.a.b	ENSGT00950000183214.a.a.a.a	ENSGT00940000155270.j	ENSGT01090000259987.a.b.d.b.a.k	ENSGT01090000259987.a.b.d.b.a.l	ENSGT00940000155003.f	ENSGT00940000165563.b	ENSGT00940000154801.m.b	ENSGT00950000182860.a.a.b.a.a.a.b	ENSGT00950000183208.B.f.b	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00390000015219	ENSGT00390000003680.a.a.a	ENSGT00940000163212.A	ENSGT00940000154906.C.d	ENSGT00940000153968.a.a.f	ENSGT00940000156635	ENSGT00940000166901	ENSGT00390000007694	ENSGT00390000015361	ENSGT00530000063557.b	ENSGT00940000155483.f
Red-bellied piranha	MODERN SPECIES	510							itgb1b (ENSPNAG00000016842)	itgb1b.1 (ENSPNAG00000016909)	epc1b (ENSPNAG00000016937)	ENSPNAG00000016956	KIF5B (ENSPNAG00000017013)	arhgap12a (ENSPNAG00000017260)	ZEB1 (ENSPNAG00000017288)	ENSPNAG00000017374 #20	ENSPNAG00000017404 #21	FNDC7 (ENSPNAG00000017431) #22	ENSPNAG00000017449	ENSPNAG00000017467	ENSPNAG00000017484	eeig2a (ENSPNAG00000017504) #26	dnaaf6 (ENSPNAG00000017520)	PIP4P1 (ENSPNAG00000017529)	ENSPNAG00000017536	ENSPNAG00000017550
Mexicana tetra	MODERN SPECIES	52	ENSAMXG00000036540	ENSAMXG00000031039	ENSAMXG00000029225	ENSAMXG00000009308	ENSAMXG00000040074	ENSAMXG00000011804	ENSAMXG00000025543	SEMA6B (ENSAMXG00000003192)	abhd17aa (ENSAMXG00000042048)	cdc34b (ENSAMXG00000041885)	chmp5b (ENSAMXG00000033472)	ENSAMXG00000024969	ENSAMXG00000029828	ENSAMXG00000038453	ENSAMXG00000040295	ENSAMXG00000043098 #22	ENSAMXG00000039598 #23	ENSAMXG00000014326	ENSAMXG00000039494	eeig2a (ENSAMXG00000014288) #26	dnaaf6 (ENSAMXG00000037030)	PIP4P1 (ENSAMXG00000014236)	ENSAMXG00000035599	zgc:152670 (ENSAMXG00000014215)	lig1 (ENSAMXG00000014178)	mpz (ENSAMXG00000032091)	atp1a2a (ENSAMXG00000014095)	sdhc (ENSAMXG00000031375)	cadm3 (ENSAMXG00000030593)	kirrel1b (ENSAMXG00000041455)	WDR47 (ENSAMXG00000040612) #19
Electric eel	MODERN SPECIES	1077													ENSEEEG00000020001	ENSEEEG00000020003	ENSEEEG00000020009 #20	FNDC7 (ENSEEEG00000020012) #22
Cyprinoidei	ANCESTRAL SPECIES	227														ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.B.b	ENSGT00980000198596.A	ENSGT00980000198596.B.a	ENSGT00940000157064.a.b.b.a.a.r	ENSGT00730000111085.B
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	63	ENSGT00390000004940.a.a.o #8	ENSGT00390000012141.a.b #9	ENSGT00390000013904.b #10	ENSGT00940000157096.s #11	ENSGT00940000157183.b.g.a #12	ENSGT00940000160041.a #13	ENSGT00940000166623.b #14	ENSGT00940000154694.d #15	ENSGT00390000013973.A.a.c.b.b.p.a.a	ENSGT00950000182975.a.a.a.a.b.f #24	ENSGT00940000155561.m.a #19	ENSGT01060000248903.a.b	ENSGT00940000159520.h.k.b.a.a.b	ENSGT00940000154667.b.b.a.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a.c #22	ENSGT00940000157064.a.b.a.a	ENSGT00730000111085.B.h	ENSGT00940000154667.b.b.a.a #20	ENSGT00940000157064.a.b.b.a.a.r.a	ENSGT00730000111085.B.g.a.a	ENSGT00940000156132.g.b #26	ENSGT00940000156504.i.b.b.a	ENSGT00940000155954.a.h	ENSGT00390000010895.b.b	ENSGT00970000193372.b.a.a.b.c	ENSGT00940000166397	ENSGT00940000155066.e.a.b.d	ENSGT00950000182897.B.a.a.d.c.c	ENSGT01090000260029.a.b.b.b.a.a.a.a.b.b.b.a.a	ENSGT00940000158085.a.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	19	camk2n1a (ENSCARG00000005757) #8	EEF1AKMT4 (ENSCARG00000005748) #7	ncapd2 (ENSCARG00000005641)	acsm3 (ENSCARG00000005595)	ENSCARG00000005556	YEATS2 (ENSCARG00000005546)	klhl24a (ENSCARG00000005540)	ENSCARG00000005535	nrp1b (ENSCARG00000005502)	WDR47 (ENSCARG00000005489) #19	ENSCARG00000005484	ENSCARG00000005480	ENSCARG00000005465	ENSCARG00000005363 #20	ENSCARG00000005345	FNDC7 (ENSCARG00000005318) #22	ENSCARG00000005278	ENSCARG00000005265	eeig2a (ENSCARG00000005251) #26	ITGB1 (ENSCARG00000004916)	epc1b (ENSCARG00000004146)	ENSCARG00000004025	ENSCARG00000003986	mterf4 (ENSCARG00000003964)	ENSCARG00000003949	ENSCARG00000003934	ENSCARG00000003915	ENSCARG00000040810	neurod6b (ENSCARG00000040789)	ENSCARG00000038669	viml (ENSCARG00000037820)
Goldfish	MODERN SPECIES	2372																FNDC7 (ENSCARG00000055856) #22	ENSCARG00000055847	ENSCARG00000055839
Cyprininae_a	ANCESTRAL SPECIES	495														ENSGT00940000154667.b.b.a.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a.c #22	ENSGT00940000157064.a.b.a.a	ENSGT00730000111085.B.h	ENSGT00940000156132.g.a.b #26	ENSGT01050000244955.b.d.a.a	ENSGT01050000244897.a.a.b.a.b	ENSGT00940000155297.hb.a.g.a	ENSGT00940000163883.B	ENSGT00980000199383	ENSGT00940000156504.i.b.b.b.b	ENSGT00940000155954.a.g	ENSGT00390000010895.b.a	ENSGT00970000193372.b.a.a.b.d
Common carp reference	MODERN SPECIES	29	ENSCCRG00000047231	ENSCCRG00000052962	ENSCCRG00000000213	ENSCCRG00000016441 #24	ENSCCRG00000032451 #19	ENSCCRG00000057825	ENSCCRG00000047240	ENSCCRG00000060928	ENSCCRG00000079044	ENSCCRG00000073776	ENSCCRG00000067384	ENSCCRG00000072887	ENSCCRG00000030276	ENSCCRG00000082768 #20	ENSCCRG00000030370 #21	ENSCCRG00000030366 #22	ENSCCRG00000016494	ENSCCRG00000030355	ENSCCRG00000030352 #26	ENSCCRG00000061841	gpc1b (ENSCCRG00000000255)	ENSCCRG00000070934	ENSCCRG00000050224	ENSCCRG00000050219	pax3a (ENSCCRG00000024914)	acsl3b (ENSCCRG00000074544)	scg2b (ENSCCRG00000003208)	ap1s3b (ENSCCRG00000003196)	ENSCCRG00000003174	cul3a (ENSCCRG00000032585)	mbnl1 (ENSCCRG00000069077)
Golden-line barbel	MODERN SPECIES	1274											ENSSGRG00000041344	ENSSGRG00000041341	ENSSGRG00000041338	ENSSGRG00000041336	ENSSGRG00000041254 #20	FNDC7 (ENSSGRG00000041248) #22	ENSSGRG00000041239	ENSSGRG00000041233	ENSSGRG00000041228	ENSSGRG00000041217	eeig2a (ENSSGRG00000041215) #26	ENSSGRG00000041214	ENSSGRG00000041213
Cyprininae	ANCESTRAL SPECIES	665															ENSGT00940000161257	ENSGT00390000004674.i.a.d #22	ENSGT00940000157064.a.b.b.a.a.r.b	ENSGT00730000111085.B.g.b	ENSGT00940000156132.g.a.b #26	ENSGT01050000244955.b.d.a.a	ENSGT01050000244897.a.a.b.a.b	ENSGT00940000155297.hb.a.g.a	ENSGT00940000156850.a.b	ENSGT00980000199383	ENSGT00940000156504.i.b.b.b.b	ENSGT00940000155954.a.g	ENSGT00390000010895.b.a	ENSGT00970000193372.b.a.a.b.d
Cyprininae_a	ANCESTRAL SPECIES	817															ENSGT00940000161257	ENSGT00390000004674.i.a.d #22	ENSGT00940000157064.a.b.b.a.a.r.b	ENSGT00730000111085.B.g.b
Golden-line barbel	MODERN SPECIES	276	chrng (ENSSGRG00000046287) #13	ENSSGRG00000046285 #14	eif4e2 (ENSSGRG00000046283) #15	ENSSGRG00000046281	ENSSGRG00000046279	ENSSGRG00000046277	CAMSAP2 (ENSSGRG00000046273) #24	WDR47 (ENSSGRG00000046272) #19	ENSSGRG00000046271	ENSSGRG00000046270	ENSSGRG00000046268	ENSSGRG00000046267	ENSSGRG00000046266	ENSSGRG00000046265	gpsm2 (ENSSGRG00000046252)	FNDC7 (ENSSGRG00000046250) #22	ENSSGRG00000046249	ENSSGRG00000046247	gpc1b (ENSSGRG00000046243)	ENSSGRG00000046242
Zebrafish	MODERN SPECIES	11	ENSDARG00000100828 #14	eif4e2 (ENSDARG00000038585) #15	CAPN10 (ENSDARG00000076634) #16	ENSDARG00000038587	ENSDARG00000114393	ccl20a.3 (ENSDARG00000101040)	CAMSAP2 (ENSDARG00000059965) #24	ENSDARG00000102714	SAMD9 (ENSDARG00000102729)	WDR47 (ENSDARG00000078136) #19	ENSDARG00000091280	ENSDARG00000095634	ENSDARG00000088423	gpsm2 (ENSDARG00000017311)	ENSDARG00000094414	FNDC7 (ENSDARG00000077096) #22	ENSDARG00000092552	ENSDARG00000092469	ENSDARG00000115238	ENSDARG00000093150	ENSDARG00000092813	prpf38b (ENSDARG00000053101) #25	eeig2a (ENSDARG00000053104) #26	ENSDARG00000074082	ENSDARG00000091590	ENSDARG00000109342	gpc1b (ENSDARG00000090585)	ENSDARG00000109215	EPHB1 (ENSDARG00000076757)	ENSDARG00000094038	ENSDARG00000078489
Clupeiformes	ANCESTRAL SPECIES	65	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01040000240916	ENSGT00990000204320	ENSGT01100000266379	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000158081.o.b	ENSGT00940000157413.l	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.d
Atlantic herring	MODERN SPECIES	14	alg3 (ENSCHAG00000014317) #10	VWA5B2 (ENSCHAG00000014299) #11	ENSCHAG00000014267	PRSS56 (ENSCHAG00000014190) #12	chrng (ENSCHAG00000014009) #13	ENSCHAG00000013964 #14	eif4e2 (ENSCHAG00000013908) #15	CAPN10 (ENSCHAG00000013868) #16	ccl20a.3 (ENSCHAG00000013835)	ENSCHAG00000013805	CAMSAP2 (ENSCHAG00000013669) #24	WDR47 (ENSCHAG00000013479) #19	ENSCHAG00000012930 #20	ENSCHAG00000012910	ENSCHAG00000012908	FNDC7 (ENSCHAG00000012892) #22	ENSCHAG00000012732 #23	ENSCHAG00000012712	prpf38b (ENSCHAG00000012703) #25	eeig2a (ENSCHAG00000012638) #26	ENSCHAG00000012406 #27	HOMER3 (ENSCHAG00000012378)	upf1 (ENSCHAG00000011953)	pgpep1 (ENSCHAG00000011933)	jund (ENSCHAG00000011907)	loxl5b (ENSCHAG00000011885)	nmrk2 (ENSCHAG00000011851)	ATCAY (ENSCHAG00000011833)	rx2 (ENSCHAG00000011826)	ENSCHAG00000011476	klf2b (ENSCHAG00000011452)
Denticle herring	MODERN SPECIES	14	HECW1 (ENSDCDG00000017042)	ENSDCDG00000017126 #12	chrng (ENSDCDG00000017130) #13	ENSDCDG00000017133 #14	eif4e2 (ENSDCDG00000017134) #15	CAPN10 (ENSDCDG00000017145) #16	ENSDCDG00000017446	ccl20a.3 (ENSDCDG00000017448)	ENSDCDG00000017450	CAMSAP2 (ENSDCDG00000017458) #24	WDR47 (ENSDCDG00000017504) #19	ENSDCDG00000017573	ENSDCDG00000017579	ENSDCDG00000017634 #20	ENSDCDG00000018540 #21	ENSDCDG00000018543 #22	ENSDCDG00000018551	ENSDCDG00000018585	ENSDCDG00000018625	eeig2a (ENSDCDG00000018655) #26	HOMER3 (ENSDCDG00000018684)	upf1 (ENSDCDG00000018778)	pgpep1 (ENSDCDG00000018895)	jund (ENSDCDG00000018897)	loxl5b (ENSDCDG00000018906)	nmrk2 (ENSDCDG00000018931)	cplx4c (ENSDCDG00000018929)	ATCAY (ENSDCDG00000018937)	rx2 (ENSDCDG00000018940)	ENSDCDG00000018941	ENSDCDG00000018959
Clupeocephala	ANCESTRAL SPECIES	227														ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000006876	ENSGT00940000156470.v.a	ENSGT00390000005318.a.a.b	ENSGT00950000183190.a.a.b.c.b ##28	ENSGT00950000183190.a.a.a.b ##28	ENSGT00940000159466	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000154149.b.a.g.a	ENSGT00940000154499	ENSGT00390000012568	ENSGT00730000111014.o.a
Otomorpha	ANCESTRAL SPECIES	203														ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00950000183190.a.a.b.c.b ##28	ENSGT00950000183190.a.a.a.b ##28	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00390000001254	ENSGT00940000155635
Otophysi	ANCESTRAL SPECIES	275													ENSGT01050000244939.a.a.b.a.b	ENSGT00550000075121	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT01030000234528.B.b.b.cb	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588
Characiphysae	ANCESTRAL SPECIES	16	ENSGT00940000165533.d	ENSGT00940000155308.c	ENSGT00940000155458.e.b	ENSGT00950000182835.d.a.k.b	ENSGT00940000154967.a.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000156473.e	ENSGT00940000158197.d	ENSGT00950000183149.B	ENSGT00410000025596.a.a	ENSGT00390000003324.eb.b	ENSGT01050000244939.a.a.b.a.b	ENSGT00550000075121	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT01030000234528.B.b.b.cb	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096
Channel catfish	MODERN SPECIES	6	scube3 (ENSIPUG00000001791)	ENSIPUG00000001776	ENSIPUG00000001772	ENSIPUG00000001753	stk35 (ENSIPUG00000001743)	pdyn (ENSIPUG00000001727)	gmeb2 (ENSIPUG00000001712)	dad1 (ENSIPUG00000001694)	ABHD4 (ENSIPUG00000001686)	ENSIPUG00000001658	ENSIPUG00000001642	TGM1 (ENSIPUG00000001631)	ENSIPUG00000001568	rabggta (ENSIPUG00000001558)	stxbp3 (ENSIPUG00000001546)	ENSIPUG00000001525 ##22	ENSIPUG00000001507	ENSIPUG00000001495	ENSIPUG00000001488	fbxo30b (ENSIPUG00000001481)	epm2a (ENSIPUG00000001457)	ENSIPUG00000001446	ENSIPUG00000001374	ENSIPUG00000001337	ENSIPUG00000001329	Slc34a2 (ENSIPUG00000001309)	ENSIPUG00000001285	prdm5 (ENSIPUG00000001248)	ndnf (ENSIPUG00000001233)	CPEB2 (ENSIPUG00000001181)	ENSIPUG00000001161
Characiphysae_b	ANCESTRAL SPECIES	8														ENSGT00550000075121	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT01030000234528.B.b.b.cb	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096
Characoidei	ANCESTRAL SPECIES	8	ENSGT00940000155308.c	ENSGT00940000155458.e.b	ENSGT00950000182835.d.a.k.b	ENSGT00940000164219	ENSGT00940000161110.a.a	ENSGT00940000153185.a.a.b	ENSGT00390000017874.b	ENSGT00940000156473.e	ENSGT00940000158197.d	ENSGT00950000183149.B	ENSGT00410000025596.a.a	ENSGT00390000003324.eb.b	ENSGT01050000244939.a.a.b.a.b	ENSGT00550000075121	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT01030000234528.B.b.b.cb	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096	ENSGT00940000155482
Red-bellied piranha	MODERN SPECIES	312	ENSPNAG00000021085	myl9a (ENSPNAG00000003666)	pfkfb2a (ENSPNAG00000021051)	ENSPNAG00000021002	scube3 (ENSPNAG00000020989)	ENSPNAG00000020915	ENSPNAG00000020900	stk35 (ENSPNAG00000020882)	pdyn (ENSPNAG00000020814)	GMEB2 (ENSPNAG00000020868)	ENSPNAG00000020758	ABHD4 (ENSPNAG00000020747)	tgm1l4 (ENSPNAG00000020719)	rabggta (ENSPNAG00000020676)	stxbp3 (ENSPNAG00000020656)	FNDC7 (ENSPNAG00000020532) ##22	ENSPNAG00000020513	ENSPNAG00000020487	fbxo30b (ENSPNAG00000020468)	EPM2A (ENSPNAG00000020454)
Mexicana tetra	MODERN SPECIES	6	DLGAP4 (ENSAMXG00000001057)	ENSAMXG00000029392	myl9a (ENSAMXG00000041368)	pfkfb2a (ENSAMXG00000001046)	ENSAMXG00000001044	scube3 (ENSAMXG00000001024)	ENSAMXG00000033667	ENSAMXG00000040243	stk35 (ENSAMXG00000035676)	pdyn (ENSAMXG00000039841)	GMEB2 (ENSAMXG00000001001)	DAD1 (ENSAMXG00000036732)	tgm1l4 (ENSAMXG00000000991)	rabggta (ENSAMXG00000000987)	stxbp3 (ENSAMXG00000000986)	ENSAMXG00000030592 ##22	ENSAMXG00000000979	ENSAMXG00000037852	fbxo30b (ENSAMXG00000033229)	EPM2A (ENSAMXG00000041652)	ENSAMXG00000040043	UTRN (ENSAMXG00000000945)	psmb11b (ENSAMXG00000041727)	ENSAMXG00000000917	slc34a2b (ENSAMXG00000036607)	CELA3A (ENSAMXG00000037630)	ENSAMXG00000037636	prdm5 (ENSAMXG00000041864)	fbxl5 (ENSAMXG00000001716)	syap1 (ENSAMXG00000001737)	AP1S2 (ENSAMXG00000001754)
Electric eel	MODERN SPECIES	30	VDR (ENSEEEG00000003098)	ENSEEEG00000003131	RAI2 (ENSEEEG00000003133)	ENSEEEG00000003136	CDKL5 (ENSEEEG00000003142)	ENSEEEG00000003174	AP1S2 (ENSEEEG00000003177)	syap1 (ENSEEEG00000003202)	fbxl5 (ENSEEEG00000003205)	ENSEEEG00000003209	ENSEEEG00000003210	ENSEEEG00000003211	ENSEEEG00000003213	rabggta (ENSEEEG00000003219)	stxbp3 (ENSEEEG00000003230)	ENSEEEG00000003236 ##22	ENSEEEG00000003239	fbxo30b (ENSEEEG00000003242)	EPM2A (ENSEEEG00000003244)	UTRN (ENSEEEG00000003274)	psmb11b (ENSEEEG00000003364)	ENSEEEG00000003366	slc34a2b (ENSEEEG00000003367)	CELA3A (ENSEEEG00000003369)	prdm5 (ENSEEEG00000003370)	ndnf (ENSEEEG00000003371)	NBEAL1 (ENSEEEG00000003376)	ENSEEEG00000003378	TRAK2 (ENSEEEG00000003382)	SEMA5B (ENSEEEG00000003388)	unc50 (ENSEEEG00000003390)
Cyprinoidei	ANCESTRAL SPECIES	83													ENSGT01050000244939.a.a.b.a.b.d	ENSGT00550000075121	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	805													ENSGT01100000263547.a.a.a.c.a	ENSGT00550000075121.a	ENSGT00940000157607.c	ENSGT00390000004674.i.b.a ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a.b	ENSGT00950000183204.b.b.a.g	ENSGT00940000153467.a.a.fc.b.a	ENSGT00950000183177.a.b.a.f
Goldfish	MODERN SPECIES	57	syn2a (ENSCARG00000040456)	slc6a1a (ENSCARG00000040336)	ENSCARG00000040315	tnnc1a (ENSCARG00000040285)	atp6ap1a (ENSCARG00000040196)	tafazzin (ENSCARG00000040009)	ENSCARG00000039959	ndnl2 (ENSCARG00000039948)	ENSCARG00000039868	smc1al (ENSCARG00000039472)	ENSCARG00000034650	zgc:113423 (ENSCARG00000034641)	ENSCARG00000034632	rabggta (ENSCARG00000034551)	stxbp3 (ENSCARG00000032086)	ENSCARG00000031922 ##22	ENSCARG00000031901 #23	ENSCARG00000031889	fbxo30b (ENSCARG00000031856)	UTRN (ENSCARG00000030783)	ENSCARG00000030746	slc34a2b (ENSCARG00000030670)	ENSCARG00000030645	WNT7A (ENSCARG00000030635)	zgc:171857 (ENSCARG00000030621)	ENSCARG00000030590	adtrp1 (ENSCARG00000030578)	sgk2a (ENSCARG00000030347)	arl6ip5b (ENSCARG00000030336)	srsf6a (ENSCARG00000030325)	zgc:113278 (ENSCARG00000029707)
Cyprininae_a	ANCESTRAL SPECIES	621													ENSGT01100000263547.a.a.a.c.a	ENSGT00550000075121.a	ENSGT00940000157607.c	ENSGT00390000004674.i.b.a ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a.b	ENSGT00940000157064.a.b.b.a.a.q.a	ENSGT00950000183204.b.b.a.g	ENSGT00940000153467.a.a.fc.b.a
Common carp reference	MODERN SPECIES	11	ENSCCRG00000025161	ENSCCRG00000041973	MDFIC2 (ENSCCRG00000041976)	mitfb (ENSCCRG00000079523)	FRMD4B (ENSCCRG00000051775)	ENSCCRG00000051777	rhoac (ENSCCRG00000073282)	ENSCCRG00000051760	ENSCCRG00000040539	ENSCCRG00000065319	ENSCCRG00000079858	ENSCCRG00000070914	ENSCCRG00000063372	rabggta (ENSCCRG00000036441)	stxbp3 (ENSCCRG00000002710)	ENSCCRG00000002753 ##22	ENSCCRG00000042350	fbxo30b (ENSCCRG00000042336)	ENSCCRG00000073881	ENSCCRG00000063533	ENSCCRG00000078021	ENSCCRG00000074702	ENSCCRG00000042344	prdm5 (ENSCCRG00000022853)	ndnf (ENSCCRG00000055993)	CPEB2 (ENSCCRG00000073539)	ENSCCRG00000033104	ENSCCRG00000013509	ENSCCRG00000060531	ENSCCRG00000022612	ENSCCRG00000070429
Golden-line barbel	MODERN SPECIES	1035							ENSSGRG00000054848	klf3 (ENSSGRG00000054852)	fam114a1 (ENSSGRG00000054855)	klhl5 (ENSSGRG00000054857)	ENSSGRG00000054858	ENSSGRG00000054861	ENSSGRG00000054862	rabggta (ENSSGRG00000054863)	stxbp3 (ENSSGRG00000054872)	ENSSGRG00000054900 ##22	ENSSGRG00000054902 #23	ENSSGRG00000054903	ENSSGRG00000054905	fbxo30b (ENSSGRG00000054906)	ENSSGRG00000054907
Cyprininae	ANCESTRAL SPECIES	168	ENSGT00940000163428.a.a.b	ENSGT00980000198821.b	ENSGT00940000171106.a	ENSGT00940000161281.j	ENSGT00730000111641.a	ENSGT00940000156326.a.a.c	ENSGT01020000230354.A.a.b.a	ENSGT00940000160369.i	ENSGT00950000182945.b.a.a.a.b.b.a.b	ENSGT00940000155218.A.d.b.a	ENSGT00940000155218.A.d.a.e	ENSGT00940000161589.c	ENSGT01050000244939.a.a.b.a.b.d	ENSGT00550000075121.b	ENSGT00940000157607.d	ENSGT00390000004674.i.b.b ##22	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a.h	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a.e	ENSGT00940000158340.h	ENSGT00390000007586.a.b.b	ENSGT00940000160357.e.b	ENSGT00940000159588.f	ENSGT01030000235096	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588.e	ENSGT00940000155482
Cyprininae_a	ANCESTRAL SPECIES	79	ENSGT00940000159065.a.a	ENSGT00980000198821.b.a.a	ENSGT00940000171106.a	ENSGT00940000161281.j	ENSGT00940000156326.a.a.c	ENSGT01020000230354.A.a.b.a	ENSGT00940000160369.i	ENSGT00950000182945.b.a.a.a.b.b.a.b	ENSGT00940000155218.A.d.b.a	ENSGT00940000155218.A.d.a.e	ENSGT00940000161589.c	ENSGT00940000163807	ENSGT01050000244939.a.a.b.a.b.d	ENSGT00550000075121.b	ENSGT00940000157607.d	ENSGT00390000004674.i.b.b ##22	ENSGT00940000157064.a.b.b.a.a.q.b	ENSGT00950000183204.b.b.a.h	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a.f	ENSGT00950000183177.a.b.a.e	ENSGT00940000158340.h	ENSGT00390000007586.a.b.b	ENSGT00940000160357.e.b	ENSGT00940000159588.f	ENSGT00940000155482.a.a	ENSGT00940000157723.d.d	ENSGT00550000074878.nb
Golden-line barbel	MODERN SPECIES	1638														rabggta (ENSSGRG00000009335)	stxbp3 (ENSSGRG00000009344)	ENSSGRG00000009855 ##22	ENSSGRG00000009863	fbxo30b (ENSSGRG00000009866)
Goldfish	MODERN SPECIES	15	FRMD4B (ENSCARG00000009066)	RBM10 (ENSCARG00000009143)	rhoac (ENSCARG00000009276)	ENSCARG00000009284	ENSCARG00000009290	ENSCARG00000009312	ENSCARG00000009315	ENSCARG00000009318	ENSCARG00000009320	ENSCARG00000009331	ENSCARG00000009335	ENSCARG00000009337	ENSCARG00000009362	TGM1 (ENSCARG00000009370)	stxbp3 (ENSCARG00000009436)	ENSCARG00000009871 ##22	fbxo30b (ENSCARG00000009881)	EPM2A (ENSCARG00000009885)	psmb11b (ENSCARG00000010046)	ENSCARG00000010060	slc34a2b (ENSCARG00000010136)	prdm5 (ENSCARG00000011170)	ndnf (ENSCARG00000011190)	CPEB2 (ENSCARG00000011220)	C1QTNF7 (ENSCARG00000011637)	ENSCARG00000011642	CC2D2A (ENSCARG00000011654)	PLEKHG1 (ENSCARG00000011944)	tcp1 (ENSCARG00000011994)	PRSS35 (ENSCARG00000012115)	snai1b (ENSCARG00000012120)
Zebrafish	MODERN SPECIES	15	ENSDARG00000115082	GGT7 (ENSDARG00000115805)	ENSDARG00000109769	snai1b (ENSDARG00000046019)	PRSS35 (ENSDARG00000059081)	tcp1 (ENSDARG00000017891)	ENSDARG00000111585	CC2D2A (ENSDARG00000090971)	C1QTNF7 (ENSDARG00000074949)	CPEB2 (ENSDARG00000052604)	ndnf (ENSDARG00000062936)	prdm5 (ENSDARG00000006288)	TGM1 (ENSDARG00000017799)	rabggta (ENSDARG00000061024)	stxbp3 (ENSDARG00000008142)	ENSDARG00000108006 ##22	ENSDARG00000075676	fbxo30b (ENSDARG00000019311)	EPM2A (ENSDARG00000059044)	ENSDARG00000098793	UTRN (ENSDARG00000100222)	psmb11b (ENSDARG00000068086)	slc34a2b (ENSDARG00000036864)	ENSDARG00000093367	zgc:113423 (ENSDARG00000058978)	ENSDARG00000093496	ENSDARG00000078404	ENSDARG00000087641	rhoac (ENSDARG00000116058)	ENSDARG00000077400	FRMD4B (ENSDARG00000076496)
Clupeiformes	ANCESTRAL SPECIES	178														ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004798	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00950000183190.a.a.b.c.b ##28	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00390000001254	ENSGT00940000155635
Denticle herring	MODERN SPECIES	270													ENSDCDG00000012296	gpsm2l (ENSDCDG00000010764) ##20	stxbp3 (ENSDCDG00000010797)	ENSDCDG00000012363 ##22	ENSDCDG00000012379 #23	ENSDCDG00000012389	ENSDCDG00000012401	fam102bb (ENSDCDG00000012430) ##26	slc25a24 (ENSDCDG00000012454) ##27	ENSDCDG00000012503	ENSDCDG00000012529 ##28	ENSDCDG00000012581	prrx1b (ENSDCDG00000012595)	ENSDCDG00000012670	gorab (ENSDCDG00000012674)	ntmt2 (ENSDCDG00000012679)	kifap3a (ENSDCDG00000012684)	niban1a (ENSDCDG00000013239)	TRMT1L (ENSDCDG00000012707)
Atlantic herring	MODERN SPECIES	1	ssbp4 (ENSCHAG00000003297)	fkbp8 (ENSCHAG00000003120)	ell (ENSCHAG00000003040)	ENSCHAG00000003026	DOT1L (ENSCHAG00000002671)	amh (ENSCHAG00000002616)	oaz1a (ENSCHAG00000002416)	org (ENSCHAG00000002353)	lingo3a (ENSCHAG00000002340)	ENSCHAG00000020805	dad1 (ENSCHAG00000020790)	ABHD4 (ENSCHAG00000020777)	ENSCHAG00000020763	ENSCHAG00000020702 ##20	stxbp3 (ENSCHAG00000020511)	FNDC7 (ENSCHAG00000020405) ##22	ENSCHAG00000020364	ENSCHAG00000020355	ENSCHAG00000020330	ENSCHAG00000020293	ENSCHAG00000020274	ENSCHAG00000020245	ENSCHAG00000020237	henmt1 (ENSCHAG00000020231)	ENSCHAG00000020217	fam102bb (ENSCHAG00000020199) ##26	slc25a24 (ENSCHAG00000019517) ##27	ENSCHAG00000019331 ##28	prrx1b (ENSCHAG00000019285)	gorab (ENSCHAG00000019279)	ntmt2 (ENSCHAG00000019275)
Euteleosteomorpha	ANCESTRAL SPECIES	70	ENSGT00510000049371	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00940000177205	ENSGT00940000163583	ENSGT00390000017201	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00390000017398	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT00940000156539	ENSGT00390000016650.c.a	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f
Protacanthopterygii	ANCESTRAL SPECIES	30	ENSGT00390000010922	ENSGT00510000049371	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00940000163583	ENSGT00390000017201	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00390000017398	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01010000224837	ENSGT00390000016650.c.a.c	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740	ENSGT00940000156073.c.b
Salmoninae	ANCESTRAL SPECIES	576					ENSGT00510000049371.m	ENSGT00530000063790.a.a.c	ENSGT00940000163583.y.a	ENSGT00940000155151.b.d.f	ENSGT00940000157892.n	ENSGT00390000017398.z	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a.e	ENSGT00940000154667.b.a.e ##20	ENSGT00940000157607.k.a	ENSGT00940000157607.l	ENSGT00390000004674.i.b ##22	ENSGT00940000167241	ENSGT00390000016650.c.a.c	ENSGT00940000156539.x	ENSGT01020000230412.A.c.b.c.a.c	ENSGT00390000003156.b.e
Huchen	DUPLICATION
Huchen	MODERN SPECIES	1257												ENSHHUG00000026642	ENSHHUG00000026638	ENSHHUG00000026626 ##20	stxbp3 (ENSHHUG00000026619)	ENSHHUG00000026616 ##22	ENSHHUG00000026612 ##22	ENSHHUG00000026605	nasp (ENSHHUG00000026580)	akr1a1b (ENSHHUG00000026425)	uck2a (ENSHHUG00000026371)	magoh (ENSHHUG00000026303)	ENSHHUG00000026300	ENSHHUG00000026297	scp2b (ENSHHUG00000026290)
Huchen	MODERN SPECIES	1257											ENSHHUG00000026642	ENSHHUG00000026638	ENSHHUG00000026626 ##20	stxbp3 (ENSHHUG00000026619)	ENSHHUG00000026616 ##22	ENSHHUG00000026612 ##22	ENSHHUG00000026605	nasp (ENSHHUG00000026580)	akr1a1b (ENSHHUG00000026425)	uck2a (ENSHHUG00000026371)	magoh (ENSHHUG00000026303)	ENSHHUG00000026300	ENSHHUG00000026297	scp2b (ENSHHUG00000026290)
Salmoninae_a	ANCESTRAL SPECIES	46	ENSGT00730000111209.r	ENSGT00940000155190.bb.a.h	ENSGT00940000156301.a.a.c.a	ENSGT00940000156209	ENSGT00390000010922	ENSGT00510000049371.m	ENSGT00530000063790.a.a.c	ENSGT00940000163583.y.a	ENSGT00940000155151.b.d.f	ENSGT00940000157892.n	ENSGT00390000017398.z	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a.e	ENSGT00940000154667.b.a.e ##20	ENSGT00940000157607.l	ENSGT00390000004674.i.b ##22	ENSGT00940000167241	ENSGT00390000016650.c.a.c	ENSGT00940000156539.x	ENSGT01020000230412.A.c.b.c.a.c	ENSGT00390000003156.b.e	ENSGT00940000154327.b.f.d	ENSGT00940000160740.f	ENSGT00940000156988.i	ENSGT00950000182879.a.b.b	ENSGT00940000166873.f	ENSGT00940000161068.f	ENSGT00940000162747.e	ENSGT00940000153837.a.a.a	ENSGT00940000156328.a.b.b.a.a	ENSGT00940000158092.o.f
Salmo	ANCESTRAL SPECIES	20	ENSGT00940000158755.j	ENSGT00730000111209.r	ENSGT00940000155190.bb.a.h	ENSGT00940000156301.a.a.c.a	ENSGT00940000156209	ENSGT00390000010922	ENSGT00510000049371.m	ENSGT00530000063790.a.a.c	ENSGT00940000163583.y.a	ENSGT00940000155151.b.d.f	ENSGT00940000157892.n	ENSGT00390000017398.z	ENSGT01030000234635.a.a.a.a.e	ENSGT00940000154667.b.a.e ##20	ENSGT00940000157607.l	ENSGT00390000004674.i.b ##22	ENSGT00940000167241	ENSGT00390000016650.c.a.c	ENSGT00940000156539.x	ENSGT01020000230412.A.c.b.c.a.c	ENSGT00390000003156.b.e	ENSGT00940000154327.b.f.d	ENSGT00940000160740.f	ENSGT00940000156988.i	ENSGT00950000182879.a.b.b	ENSGT00940000166873.f	ENSGT00940000161068.f	ENSGT00940000162747.e	ENSGT00940000153837.a.a.a	ENSGT00940000156328.a.b.b.a.a	ENSGT00940000158092.o.f
Atlantic salmon	MODERN SPECIES	15	PDE4B (ENSSSAG00000055457)	SGIP1 (ENSSSAG00000081219)	insl5a (ENSSSAG00000081225)	ENSSSAG00000116821	ENSSSAG00000121704	pars2 (ENSSSAG00000054727)	lurap1 (ENSSSAG00000008690)	ENSSSAG00000008705	ENSSSAG00000100007	cef10 (ENSSSAG00000008740)	DDAH1 (ENSSSAG00000008768)	C1orf52 (ENSSSAG00000119602)	SYDE2 (ENSSSAG00000008799)	ENSSSAG00000008827 ##20	ENSSSAG00000008944	ENSSSAG00000009023 ##22	ENSSSAG00000009055	ENSSSAG00000009085	AK1A1 (ENSSSAG00000009168)	ENSSSAG00000009560	ENSSSAG00000009680	ENSSSAG00000096548	ENSSSAG00000103073	ENSSSAG00000009691	ENSSSAG00000009753	ENSSSAG00000010109	ENSSSAG00000113270	ZC3H3 (ENSSSAG00000010148)	ENSSSAG00000111841	RHPN1 (ENSSSAG00000010178)	ENSSSAG00000112797
River trout	MODERN SPECIES	33	PDE4B (ENSSTUG00000014883)	SGIP1 (ENSSTUG00000015115)	ENSSTUG00000015164	ENSSTUG00000015172	ttc4 (ENSSTUG00000015182)	lurap1 (ENSSTUG00000015246)	ENSSTUG00000015254	ENSSTUG00000015287	ccn1 (ENSSTUG00000015301)	DDAH1 (ENSSTUG00000015326)	zgc:65873 (ENSSTUG00000015342)	ENSSTUG00000015355	ENSSTUG00000015363 ##20	ENSSTUG00000015410	ENSSTUG00000015424	FNDC7 (ENSSTUG00000015443) ##22	ENSSTUG00000015506	nasp (ENSSTUG00000015527)	akr1a1b (ENSSTUG00000015577)	uck2a (ENSSTUG00000015820)	magoh (ENSSTUG00000015891)	scp2b (ENSSTUG00000015898)	PODN (ENSSTUG00000015912)	ENSSTUG00000015959	cyp2p6 (ENSSTUG00000016912)	ENSSTUG00000016937	ZC3H3 (ENSSTUG00000000171)	mafaa (ENSSTUG00000000182)	RHPN1 (ENSSTUG00000000186)	ENSSTUG00000000207	ENSSTUG00000000215
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00730000111209.q	ENSGT00940000155190.bb.a.g	ENSGT00940000156301.a.a.c.b	ENSGT00940000174981	ENSGT00390000010922.j	ENSGT00510000049371.m	ENSGT00530000063790.a.a.c	ENSGT00940000163583.y.a	ENSGT00940000155151.b.d.f	ENSGT00940000157892.n	ENSGT00390000017398.z	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a.e	ENSGT00940000154667.b.a.e ##20	ENSGT00940000157607.l	ENSGT00390000004674.i.b ##22	ENSGT01010000224837	ENSGT00390000016650.c.a.c	ENSGT00940000156539.x	ENSGT01020000230412.A.c.b.c.a.c	ENSGT00390000003156.b.e	ENSGT00940000154327.b.f.d	ENSGT00940000160740.f	ENSGT00940000156988.i	ENSGT00950000182879.a.b.b	ENSGT00940000166873.f	ENSGT00940000161068.f	ENSGT00940000162747.e	ENSGT00940000153837.a.a.a	ENSGT00940000158092.o.f	ENSGT00940000157394.a.b
Rainbow trout	MODERN SPECIES	22	ttc4 (ENSOMYG00000035790)	ENSOMYG00000035778	lurap1 (ENSOMYG00000035776)	ENSOMYG00000035756	ENSOMYG00000035737	CCN1 (ENSOMYG00000035727)	ENSOMYG00000076395	DDAH1 (ENSOMYG00000035708)	C1orf52 (ENSOMYG00000057298)	ENSOMYG00000055558	ENSOMYG00000062611	SYDE2 (ENSOMYG00000074687)	ENSOMYG00000035648 ##20	ENSOMYG00000035620	ENSOMYG00000051472	ENSOMYG00000035615 ##22	ENSOMYG00000035589	ENSOMYG00000035570	ENSOMYG00000035523	ENSOMYG00000035492	ENSOMYG00000035481	ENSOMYG00000073060	ENSOMYG00000035469	ENSOMYG00000033780	ENSOMYG00000033651	ENSOMYG00000033635	ZC3H3 (ENSOMYG00000033628)	mafaa (ENSOMYG00000053094)	RHPN1 (ENSOMYG00000033419)	ENSOMYG00000053389	igfbp3 (ENSOMYG00000033369)
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00940000155190.bb.a.g	ENSGT00940000156301.a.a.c.b	ENSGT00940000174981	ENSGT00390000010922.j	ENSGT00510000049371.m	ENSGT00530000063790.a.a.c	ENSGT00940000163514.C	ENSGT00940000163583.y.a	ENSGT00940000155151.b.d.f	ENSGT00940000157892.n	ENSGT00390000017398.z	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a.e	ENSGT00940000154667.b.a.e ##20	ENSGT00940000157607.l	ENSGT00390000004674.i.b ##22	ENSGT01010000224837	ENSGT00390000016650.c.a.c	ENSGT00940000156539.x	ENSGT01020000230412.A.c.b.c.a.c	ENSGT00390000003156.b.e	ENSGT00940000154327.b.f.d	ENSGT00940000160740.f	ENSGT00940000156988.i	ENSGT00950000182879.a.b.b	ENSGT00940000166873.f	ENSGT00940000161068.f	ENSGT00940000162747.e	ENSGT00940000153837.a.a.a	ENSGT00940000156328.a.b.a	ENSGT00940000158092.o.f
Chinook salmon	MODERN SPECIES		lepr (ENSOTSG00005008832)	PDE4B (ENSOTSG00005008821)	SGIP1 (ENSOTSG00005008819)	ENSOTSG00005008818	pars2 (ENSOTSG00005008817)	ttc4 (ENSOTSG00005008816)	lurap1 (ENSOTSG00005008815)	ENSOTSG00005008814	ENSOTSG00005008813	ccn1 (ENSOTSG00005008812)	DDAH1 (ENSOTSG00005008808)	zgc:65873 (ENSOTSG00005008806)	SYDE2 (ENSOTSG00005008804)	ENSOTSG00005008802 ##20	ENSOTSG00005008800	FNDC7 (ENSOTSG00005008797) ##22	ENSOTSG00005008795	ENSOTSG00005008793	nasp (ENSOTSG00005008792)	akr1a1b (ENSOTSG00005008790)	uck2a (ENSOTSG00005008787)	magoh (ENSOTSG00005008783)	scp2b (ENSOTSG00005008781)	PODN (ENSOTSG00005008779)	TUT4 (ENSOTSG00005001603)	cyp2p6 (ENSOTSG00005001551)	ENSOTSG00005001548	ZC3H3 (ENSOTSG00005001547)	mafaa (ENSOTSG00005001545)	RHPN1 (ENSOTSG00005000675)	igfbp3 (ENSOTSG00005000646)
Coho salmon	MODERN SPECIES	1	PDE4B (ENSOKIG00005029281)	SGIP1 (ENSOKIG00005029132)	ENSOKIG00005029116	pars2 (ENSOKIG00005029102)	ttc4 (ENSOKIG00005029066)	lurap1 (ENSOKIG00005029017)	ENSOKIG00005029005	ENSOKIG00005028989	CCN1 (ENSOKIG00005028956)	DDAH1 (ENSOKIG00005028932)	C1orf52 (ENSOKIG00005028919)	ENSOKIG00005028912	ENSOKIG00005028882	ENSOKIG00005028846 ##20	ENSOKIG00005028837	FNDC7 (ENSOKIG00005028825) ##22	ENSOKIG00005028817	ENSOKIG00005028777	AKR1A1 (ENSOKIG00005028709)	UCK2 (ENSOKIG00005028583)	ENSOKIG00005028534	ENSOKIG00005028525	PODN (ENSOKIG00005028507)	TUT4 (ENSOKIG00005028082)	cyp2p6 (ENSOKIG00005027996)	ENSOKIG00005027923	ZC3H3 (ENSOKIG00005027903)	mafaa (ENSOKIG00005027898)	RHPN1 (ENSOKIG00005027393)	ENSOKIG00005027349	igfbp3 (ENSOKIG00005027341)
Northern pike	MODERN SPECIES	7	dnai4 (ENSELUG00000022844)	ttc4 (ENSELUG00000022921)	TTC22 (ENSELUG00000022941)	lurap1 (ENSELUG00000022952)	ENSELUG00000031759	ENSELUG00000022977	ZNHIT6 (ENSELUG00000023035)	ccn1 (ENSELUG00000023051)	DDAH1 (ENSELUG00000023108)	zgc:65873 (ENSELUG00000023125)	SYDE2 (ENSELUG00000023134)	DNAI3 (ENSELUG00000023142)	MCOLN3 (ENSELUG00000023196)	ENSELUG00000023255 ##20	stxbp3 (ENSELUG00000023333)	FNDC7 (ENSELUG00000023352) ##22	ENSELUG00000023457	henmt1 (ENSELUG00000023477)	fam102bb (ENSELUG00000023557) ##26	slc25a24 (ENSELUG00000023588) ##27	tmem69 (ENSELUG00000023591)	GPBP1L1 (ENSELUG00000023599)	ENSELUG00000023609	akr1a1 (ENSELUG00000023830)	nasp (ENSELUG00000023668)	TMCO1 (ENSELUG00000028911)	uck2a (ENSELUG00000023958)	magoh (ENSELUG00000023997)	cpt2 (ENSELUG00000024049)	scp2b (ENSELUG00000030034)	PODN (ENSELUG00000024073)
Acanthomorphata	ANCESTRAL SPECIES	116		ENSGT00390000017398	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a ##20	ENSGT00950000182930.D	ENSGT00940000155297.hb.b	ENSGT01050000244897.a.a.b.b	ENSGT01050000244955.b.c	ENSGT00390000016650.c.a	ENSGT00940000167241	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Euacanthomorphacea	ANCESTRAL SPECIES	31	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074
Percomorphaceae	ANCESTRAL SPECIES	32	ENSGT00940000154130.a.a.b	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Mangrove rivulus	MODERN SPECIES	53								mccc1 (ENSKMAG00000008763)	ENSKMAG00000008804	ENSKMAG00000008822	PIK3CA (ENSKMAG00000008853)	ENSKMAG00000008962	ENSKMAG00000009014	ENSKMAG00000009064	stxbp3 (ENSKMAG00000009088)	ENSKMAG00000009166 ##22	ENSKMAG00000009204	HENMT1 (ENSKMAG00000009299)	fam102bb (ENSKMAG00000009363) ##26	slc25a24 (ENSKMAG00000009445) ##27	tmem69 (ENSKMAG00000009502)	tm4sf4 (ENSKMAG00000009516)	ENSKMAG00000009538	ENSKMAG00000009583	cp (ENSKMAG00000009603)	ENSKMAG00000009656	ncbp2 (ENSKMAG00000009686)	fkbp2 (ENSKMAG00000009726)	NCBP2AS2 (ENSKMAG00000009736)	MELTF (ENSKMAG00000009751)	ENSKMAG00000009808
Turquoise killifish	MODERN SPECIES	1626	DNAJC19 (ENSNFUG00015017077)	ENSNFUG00015017098	ENSNFUG00015017106	ATP11B (ENSNFUG00015017152)	MCCC1 (ENSNFUG00015017726)	ENSNFUG00015019482	ENSNFUG00015019487	KNG1 (ENSNFUG00015019491)	PIK3CA (ENSNFUG00015019503)	BX548160.2 (ENSNFUG00015019542)	ENSNFUG00015019547	ENSNFUG00015019556	ENSNFUG00015019560	ENSNFUG00015019565	STXBP3 (ENSNFUG00015019624)	FNDC7 (ENSNFUG00015020481) ##22	ENSNFUG00015020496	ENSNFUG00015020505	henmt1 (ENSNFUG00015020514)	FAM102BB (ENSNFUG00015020518) ##26	SLC25A24 (ENSNFUG00015020534) ##27	TMEM69 (ENSNFUG00015021076)	tm4sf4 (ENSNFUG00015021079)	ENSNFUG00015021086	TM4SF18 (ENSNFUG00015021091)	CP (ENSNFUG00015021159)	Nfu_g_1_002524 (ENSNFUG00015023093)	NCBP2 (ENSNFUG00015024096)	FKBP2 (ENSNFUG00015024102)	NCBP2AS2 (ENSNFUG00015024105)	MELTF (ENSNFUG00015024114)
Cyprinodontoidei	ANCESTRAL SPECIES	29	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
Poecilia	ANCESTRAL SPECIES	1	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a.e	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
NAME_6	ANCESTRAL SPECIES	258						ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a.e	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866
Amazon molly	MODERN SPECIES	669						sox2 (ENSPFOG00000020565)	ATP11B (ENSPFOG00000019122)	mccc1 (ENSPFOG00000019171)	ENSPFOG00000023632	ENSPFOG00000019183	PIK3CA (ENSPFOG00000019194)	ENSPFOG00000019206	ENSPFOG00000019210	ENSPFOG00000019213	stxbp3 (ENSPFOG00000019220)	ENSPFOG00000019229 ##22	ENSPFOG00000022182	henmt1 (ENSPFOG00000019232)	fam102bb (ENSPFOG00000019237) ##26	slc25a24 (ENSPFOG00000019244) ##27	tmem69 (ENSPFOG00000019256)	tm4sf4 (ENSPFOG00000019258)	ENSPFOG00000019261	ENSPFOG00000019264	cp (ENSPFOG00000019269)
Sailfin molly	MODERN SPECIES	173						sox2 (ENSPLAG00000022947)	ATP11B (ENSPLAG00000022930)	mccc1 (ENSPLAG00000022735)	ENSPLAG00000022676	ENSPLAG00000022669	PIK3CA (ENSPLAG00000022638)	ZMAT3 (ENSPLAG00000022572)	ENSPLAG00000022544	ENSPLAG00000022503	stxbp3 (ENSPLAG00000022439)	ENSPLAG00000022387 ##22
Guppy	MODERN SPECIES	456	fnbp1l (ENSPREG00000022786)	bcar3 (ENSPREG00000022769)	hps3 (ENSPREG00000022756)	ttc14 (ENSPREG00000022747)	fxr1 (ENSPREG00000022738)	dnajc19 (ENSPREG00000022727)	sox2 (ENSPREG00000022723)	ATP11B (ENSPREG00000022699)	mccc1 (ENSPREG00000022680)	ENSPREG00000022675	ENSPREG00000022657	ENSPREG00000022643	ENSPREG00000022632	ENSPREG00000022616	stxbp3 (ENSPREG00000022601)	ENSPREG00000022590 ##22	ENSPREG00000022583	ENSPREG00000022577	ENSPREG00000022570	henmt1 (ENSPREG00000022562)	fam102bb (ENSPREG00000022550) ##26	slc25a24 (ENSPREG00000022535) ##27	tmem69 (ENSPREG00000022526)	tm4sf4 (ENSPREG00000022516)	ENSPREG00000022499	ENSPREG00000022487	cp (ENSPREG00000022466)	ENSPREG00000021986	ncbp2 (ENSPREG00000021643)	fkbp2 (ENSPREG00000021633)	ENSPREG00000021628
Platyfish	MODERN SPECIES	23	bcar3 (ENSXMAG00000000707)	hps3 (ENSXMAG00000000688)	ENSXMAG00000025704	ttc14 (ENSXMAG00000016060)	fxr1 (ENSXMAG00000000666)	dnajc19 (ENSXMAG00000000660)	sox2 (ENSXMAG00000020128)	ATP11B (ENSXMAG00000000614)	mccc1 (ENSXMAG00000000611)	ENSXMAG00000000609	PIK3CA (ENSXMAG00000000586)	ENSXMAG00000015188	ENSXMAG00000002519	ENSXMAG00000000582	stxbp3 (ENSXMAG00000000568)	ENSXMAG00000000562 ##22	ENSXMAG00000000559	henmt1 (ENSXMAG00000000555)	fam102bb (ENSXMAG00000000553) ##26	slc25a24 (ENSXMAG00000000548) ##27	tmem69 (ENSXMAG00000000546)	tm4sf4 (ENSXMAG00000000538)	ENSXMAG00000000527	ENSXMAG00000029859	cp (ENSXMAG00000000516)	ENSXMAG00000000483	ncbp2 (ENSXMAG00000010096)	fkbp2 (ENSXMAG00000010101)	NCBP2AS2 (ENSXMAG00000020195)	MELTF (ENSXMAG00000010103)	ENSXMAG00000002899
NAME_4	ANCESTRAL SPECIES	62	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Mummichog	MODERN SPECIES	2395		ttc14 (ENSFHEG00000003862)	ENSFHEG00000003734	fxr1 (ENSFHEG00000003714)	dnajc19 (ENSFHEG00000003702)	sox2 (ENSFHEG00000003675)	ATP11B (ENSFHEG00000003653)	mccc1 (ENSFHEG00000003581)	ENSFHEG00000003270	ENSFHEG00000003260	PIK3CA (ENSFHEG00000003251)	ZMAT3 (ENSFHEG00000003221)	ENSFHEG00000003207	ENSFHEG00000003197	stxbp3 (ENSFHEG00000003185)	ENSFHEG00000003177 ##22	ENSFHEG00000003168 #23	ENSFHEG00000003159	ENSFHEG00000003137	henmt1 (ENSFHEG00000003127)	fam102bb (ENSFHEG00000003122) ##26	slc25a24 (ENSFHEG00000003104) ##27	tmem69 (ENSFHEG00000003075)	tm4sf4 (ENSFHEG00000003069)	ENSFHEG00000003061	ENSFHEG00000003052	cp (ENSFHEG00000003044)	ENSFHEG00000002995	ncbp2 (ENSFHEG00000002308)	fkbp2 (ENSFHEG00000002303)	NCBP2AS2 (ENSFHEG00000002289)
Sheepshead minnow	MODERN SPECIES	745									ENSCVAG00000011753	PIK3CA (ENSCVAG00000000309)	ENSCVAG00000011847	ENSCVAG00000011852	ENSCVAG00000011860	ENSCVAG00000011969	stxbp3 (ENSCVAG00000011988)	ENSCVAG00000011996 ##22	ENSCVAG00000012039 #23	ENSCVAG00000012063	henmt1 (ENSCVAG00000012108)	fam102bb (ENSCVAG00000012132) ##26	slc25a24 (ENSCVAG00000012175) ##27	tmem69 (ENSCVAG00000012182)	tm4sf4 (ENSCVAG00000012196)	ENSCVAG00000012227	ENSCVAG00000012235	cp (ENSCVAG00000012247)	ENSCVAG00000012742	ncbp2 (ENSCVAG00000012766)	fkbp2 (ENSCVAG00000012797)	NCBP2AS2 (ENSCVAG00000012803)	MELTF (ENSCVAG00000012897)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866.q.a	ENSGT00940000155866.q.b	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866.q.a	ENSGT00940000155866.q.b	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Indian medaka	MODERN SPECIES	13	ENSOMEG00000011872	ttc14 (ENSOMEG00000011795)	fxr1 (ENSOMEG00000011753)	dnajc19 (ENSOMEG00000011655)	sox2 (ENSOMEG00000011636)	ATP11B (ENSOMEG00000011605)	mccc1 (ENSOMEG00000011470)	ENSOMEG00000011439	kng1 (ENSOMEG00000011412)	PIK3CA (ENSOMEG00000011383)	ENSOMEG00000011303	ENSOMEG00000011259	ENSOMEG00000011225	ENSOMEG00000011198	stxbp3 (ENSOMEG00000011180)	FNDC7 (ENSOMEG00000011142) ##22	ENSOMEG00000011097 #23	ENSOMEG00000011070	ENSOMEG00000011001	henmt1 (ENSOMEG00000010988)	fam102bb (ENSOMEG00000010933) ##26	slc25a24 (ENSOMEG00000010867) ##27	tmem69 (ENSOMEG00000010792)	tm4sf4 (ENSOMEG00000010763)	ENSOMEG00000010724	TM4SF1 (ENSOMEG00000010695)	cp (ENSOMEG00000010674)	cp (ENSOMEG00000010618)	ENSOMEG00000010559	ncbp2 (ENSOMEG00000010498)	fkbp2 (ENSOMEG00000000250)
Javanese ricefish	MODERN SPECIES	18	hps3 (ENSOJAG00000003815)	ENSOJAG00000003787	ttc14 (ENSOJAG00000022381)	fxr1 (ENSOJAG00000022030)	dnajc19 (ENSOJAG00000021937)	ENSOJAG00000021914	ATP11B (ENSOJAG00000021737)	mccc1 (ENSOJAG00000021188)	ENSOJAG00000021150	kng1 (ENSOJAG00000021146)	PIK3CA (ENSOJAG00000021116)	ENSOJAG00000021109	ENSOJAG00000021105	ENSOJAG00000021089	stxbp3 (ENSOJAG00000020548)	FNDC7 (ENSOJAG00000020494) ##22	ENSOJAG00000020464	ENSOJAG00000020449	henmt1 (ENSOJAG00000020437)	fam102bb (ENSOJAG00000020389) ##26	slc25a24 (ENSOJAG00000020182) ##27	tmem69 (ENSOJAG00000020157)	tm4sf4 (ENSOJAG00000020149)	TM4SF1 (ENSOJAG00000020132)	cp (ENSOJAG00000017873)	ENSOJAG00000017811	ENSOJAG00000017732	ncbp2 (ENSOJAG00000017672)	fkbp2 (ENSOJAG00000017663)	ENSOJAG00000017655	MELTF (ENSOJAG00000017343)
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT01100000264681	ENSGT00390000013701.w	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866.q.a	ENSGT00940000160228.i.a.b	ENSGT00940000155866.q.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Chinese medaka	MODERN SPECIES	141									ENSOSIG00000010776	ENSOSIG00000010773	PIK3CA (ENSOSIG00000010753)	ENSOSIG00000010625	ENSOSIG00000010619	ENSOSIG00000010616	stxbp3 (ENSOSIG00000008178)	ENSOSIG00000008146 ##22	ENSOSIG00000008140	ENSOSIG00000008138	fam102bb (ENSOSIG00000008133) ##26	slc25a24 (ENSOSIG00000007941) ##27	tmem69 (ENSOSIG00000007932)	tm4sf4 (ENSOSIG00000007931)	ENSOSIG00000007930	cp (ENSOSIG00000005940)	ENSOSIG00000005922
Japanese Medaka HdrR	MODERN SPECIES	18	ENSORLG00000029868	ttc14 (ENSORLG00000011825)	fxr1 (ENSORLG00000011787)	dnajc19 (ENSORLG00000026035)	ENSORLG00000023151	sox2 (ENSORLG00000011685)	ATP11B (ENSORLG00000025942)	mccc1 (ENSORLG00000011678)	ENSORLG00000025358	kng1 (ENSORLG00000011656)	PIK3CA (ENSORLG00000011644)	ENSORLG00000011575	ENSORLG00000011566	ENSORLG00000011540	stxbp3 (ENSORLG00000011502)	ENSORLG00000011405 ##22	ENSORLG00000029557	ENSORLG00000028575	henmt1 (ENSORLG00000011389)	fam102bb (ENSORLG00000011370) ##26	slc25a24 (ENSORLG00000011340) ##27	tmem69 (ENSORLG00000011294)	ENSORLG00000011276	ENSORLG00000024343	ENSORLG00000029146	cp (ENSORLG00000011260)	ncbp2 (ENSORLG00000011235)	NCBP2AS2 (ENSORLG00000024594)	fkbp2 (ENSORLG00000011225)	MELTF (ENSORLG00000011217)	ENSORLG00000011180
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Cichlidae	ANCESTRAL SPECIES	43															ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Pseudocrenilabrinae	ANCESTRAL SPECIES	23	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Burton s mouthbrooder	MODERN SPECIES	329	ttc14 (ENSHBUG00000004981)	fxr1 (ENSHBUG00000004901)	dnajc19 (ENSHBUG00000004787)	sox2 (ENSHBUG00000004735)	ENSHBUG00000000117	ATP11B (ENSHBUG00000004693)	mccc1 (ENSHBUG00000000956)	ENSHBUG00000004546	ENSHBUG00000004522	ENSHBUG00000004414	ENSHBUG00000004401	PIK3CA (ENSHBUG00000004357)	ENSHBUG00000004293	ENSHBUG00000004261	stxbp3 (ENSHBUG00000004244)	FNDC7 (ENSHBUG00000004176) ##22	ENSHBUG00000004146	henmt1 (ENSHBUG00000004089)	fam102bb (ENSHBUG00000004080) ##26	slc25a24 (ENSHBUG00000004054) ##27	tmem69 (ENSHBUG00000004030)	tm4sf4 (ENSHBUG00000004028)	ENSHBUG00000004011	ENSHBUG00000003981	cp (ENSHBUG00000003968)	ENSHBUG00000003944	ncbp2 (ENSHBUG00000003914)	fkbp2 (ENSHBUG00000003899)	NCBP2AS2 (ENSHBUG00000003870)	MELTF (ENSHBUG00000003861)	ENSHBUG00000003817
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Haplochromini_B	ANCESTRAL SPECIES	32	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00530000064692.B.b.a.d.a.a.a.b	ENSGT00940000164897.a.b.b	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00460000041630	ENSGT00940000154507.t.d	ENSGT00730000111202	ENSGT00940000155531.a.a	ENSGT00950000182930.B	ENSGT00940000154507.t.c	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Eastern happy	MODERN SPECIES	8	ENSACLG00000025904	ENSACLG00000025909	ENSACLG00000025947	ENSACLG00000025953	ATP11B (ENSACLG00000025964)	mccc1 (ENSACLG00000026110)	ENSACLG00000026175	ENSACLG00000026193	ENSACLG00000026226	ENSACLG00000026272	PIK3CA (ENSACLG00000026297)	ENSACLG00000026340	ENSACLG00000026341	ENSACLG00000026358	stxbp3 (ENSACLG00000026374)	FNDC7 (ENSACLG00000026434) ##22	ENSACLG00000026442	ENSACLG00000026452	ENSACLG00000026479	henmt1 (ENSACLG00000026501)	fam102bb (ENSACLG00000026508) ##26	slc25a24 (ENSACLG00000026542) ##27	tmem69 (ENSACLG00000026570)	tm4sf4 (ENSACLG00000026580)	ENSACLG00000026595	ENSACLG00000026614	cp (ENSACLG00000026629)	ENSACLG00000026698	ENSACLG00000026714	ncbp2 (ENSACLG00000026775)	fkbp2 (ENSACLG00000026786)
Zebra mbuna	MODERN SPECIES	66													ENSMZEG00005018924	ENSMZEG00005018914	stxbp3 (ENSMZEG00005018900)	FNDC7 (ENSMZEG00005018888) ##22	ENSMZEG00005018882	ENSMZEG00005018874	henmt1 (ENSMZEG00005018860)	fam102bb (ENSMZEG00005018834) ##26	slc25a24 (ENSMZEG00005018818) ##27	tmem69 (ENSMZEG00005018815)	tm4sf4 (ENSMZEG00005018810)	ENSMZEG00005018803	ENSMZEG00005018798	cp (ENSMZEG00005018785)	ENSMZEG00005018025	ncbp2 (ENSMZEG00005017982)
P. nyererei	MODERN SPECIES	367	ttc14 (ENSPNYG00000014013)	fxr1 (ENSPNYG00000014047)	dnajc19 (ENSPNYG00000014103)	sox2 (ENSPNYG00000014128)	ENSPNYG00000014137	ATP11B (ENSPNYG00000014182)	ENSPNYG00000014255	ENSPNYG00000014271	ENSPNYG00000014294	ENSPNYG00000014339	ZMAT3 (ENSPNYG00000014350)	PIK3CA (ENSPNYG00000014370)	ENSPNYG00000014435	ENSPNYG00000014452	stxbp3 (ENSPNYG00000014469)	FNDC7 (ENSPNYG00000014503) ##22	ENSPNYG00000014551	ENSPNYG00000014563	henmt1 (ENSPNYG00000014586)	fam102bb (ENSPNYG00000014642) ##26	slc25a24 (ENSPNYG00000014664) ##27	tmem69 (ENSPNYG00000014680)	tm4sf4 (ENSPNYG00000014690)	ENSPNYG00000014706	ENSPNYG00000014748	cp (ENSPNYG00000014794)	ENSPNYG00000014968	ncbp2 (ENSPNYG00000015623)	fkbp2 (ENSPNYG00000015640)	NCBP2AS2 (ENSPNYG00000015665)	MELTF (ENSPNYG00000015674)
Lyretail cichlid	MODERN SPECIES	343	ttc14 (ENSNBRG00000021095)	fxr1 (ENSNBRG00000021072)	dnajc19 (ENSNBRG00000021053)	sox2 (ENSNBRG00000021046)	ENSNBRG00000021036	ENSNBRG00000021026	ATP11B (ENSNBRG00000020967)	ENSNBRG00000020946	ENSNBRG00000020924	ENSNBRG00000020902	ZMAT3 (ENSNBRG00000020886)	ENSNBRG00000020876	PIK3CA (ENSNBRG00000020832)	ENSNBRG00000020823	stxbp3 (ENSNBRG00000020763)	FNDC7 (ENSNBRG00000020687) ##22	ENSNBRG00000020673	ENSNBRG00000020660	henmt1 (ENSNBRG00000020636)	fam102bb (ENSNBRG00000020617) ##26	slc25a24 (ENSNBRG00000020569) ##27	tmem69 (ENSNBRG00000020558)	tm4sf4 (ENSNBRG00000020547)	ENSNBRG00000020525	ENSNBRG00000020517	cp (ENSNBRG00000020318)	ENSNBRG00000019528
Midas cichlid	MODERN SPECIES	487	cd248a (ENSACIG00000023389)	hps3 (ENSACIG00000023368)	ttc14 (ENSACIG00000023360)	fxr1 (ENSACIG00000023354)	dnajc19 (ENSACIG00000023350)	sox2 (ENSACIG00000023348)	ENSACIG00000023342	ATP11B (ENSACIG00000023329)	mccc1 (ENSACIG00000023146)	ENSACIG00000023097	ENSACIG00000023068	PIK3CA (ENSACIG00000023052)	ZMAT3 (ENSACIG00000023037)	ENSACIG00000023030	stxbp3 (ENSACIG00000022914)	ENSACIG00000022889 ##22
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000179565	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000179565	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798.k	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074
Orange clownfish	MODERN SPECIES	11	hps3 (ENSAPEG00000015313)	ttc14 (ENSAPEG00000015072)	fxr1 (ENSAPEG00000014981)	dnajc19 (ENSAPEG00000014945)	sox2 (ENSAPEG00000014838)	ATP11B (ENSAPEG00000014737)	mccc1 (ENSAPEG00000014712)	ENSAPEG00000014683	kng1 (ENSAPEG00000014666)	PIK3CA (ENSAPEG00000014601)	ENSAPEG00000014580	ZMAT3 (ENSAPEG00000014553)	ENSAPEG00000014504	ENSAPEG00000014456	stxbp3 (ENSAPEG00000014381)	ENSAPEG00000014335 ##22	ENSAPEG00000014318	ENSAPEG00000014292	ENSAPEG00000014261	ENSAPEG00000014238	henmt1 (ENSAPEG00000014209)	fam102bb (ENSAPEG00000014168) ##26	slc25a24 (ENSAPEG00000014091) ##27	tmem69 (ENSAPEG00000014072)	tm4sf4 (ENSAPEG00000014063)	ENSAPEG00000014015	TM4SF1 (ENSAPEG00000014001)	cp (ENSAPEG00000013973)	ENSAPEG00000013461	ncbp2 (ENSAPEG00000013395)	fkbp2 (ENSAPEG00000013290)
Clown anemonefish	MODERN SPECIES	3349						ATP11B (ENSAOCG00000018288)	mccc1 (ENSAOCG00000018137)	ENSAOCG00000001280	kng1 (ENSAOCG00000018035)	PIK3CA (ENSAOCG00000018022)	ENSAOCG00000017970	ENSAOCG00000017955	ENSAOCG00000017926	ENSAOCG00000017907	stxbp3 (ENSAOCG00000017839)	ENSAOCG00000017776 ##22	ENSAOCG00000017745	ENSAOCG00000017733	ENSAOCG00000017715	ENSAOCG00000017693	henmt1 (ENSAOCG00000017675)	fam102bb (ENSAOCG00000017661) ##26	slc25a24 (ENSAOCG00000017627) ##27	tmem69 (ENSAOCG00000017616)
Spiny chromis	MODERN SPECIES	727															stxbp3 (ENSAPOG00000013650)	ENSAPOG00000013572 ##22	ENSAPOG00000013532	ENSAPOG00000013513	ENSAPOG00000013498	ENSAPOG00000013478	henmt1 (ENSAPOG00000013450)	fam102bb (ENSAPOG00000013374) ##26	slc25a24 (ENSAPOG00000013309) ##27	tmem69 (ENSAPOG00000000356)	tm4sf4 (ENSAPOG00000013265)	ENSAPOG00000013253	TM4SF1 (ENSAPOG00000013240)	cp (ENSAPOG00000013208)
Bicolor damselfish	MODERN SPECIES	1212								mccc1 (ENSSPAG00000011206)	ENSSPAG00000011189	ENSSPAG00000011176	PIK3CA (ENSSPAG00000011095)	ZMAT3 (ENSSPAG00000011062)	ENSSPAG00000011052	ENSSPAG00000011023	stxbp3 (ENSSPAG00000010967)	ENSSPAG00000010939 ##22	ENSSPAG00000010928	ENSSPAG00000010922	ENSSPAG00000010908	ENSSPAG00000010896	henmt1 (ENSSPAG00000010827)	fam102bb (ENSSPAG00000010766) ##26	tmem69 (ENSSPAG00000010747)	slc25a24 (ENSSPAG00000010712) ##27
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00390000015458	ENSGT00980000203290	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
Climbing perch	MODERN SPECIES	17	ENSATEG00000000143	ENSATEG00000000123	ENSATEG00000000110	ttc14 (ENSATEG00000000101)	fxr1 (ENSATEG00000022488)	dnajc19 (ENSATEG00000000021)	ATP11B (ENSATEG00000022414)	mccc1 (ENSATEG00000022375)	ENSATEG00000022365	ENSATEG00000022305	ENSATEG00000022254	ENSATEG00000022244	ENSATEG00000022229	ENSATEG00000022213	stxbp3 (ENSATEG00000022183)	ENSATEG00000022164 ##22	ENSATEG00000030134	ENSATEG00000022128	ENSATEG00000022099 ##26	ENSATEG00000022075 ##27	ENSATEG00000022066	tm4sf4 (ENSATEG00000022042)	ENSATEG00000022026	ENSATEG00000022019	cp (ENSATEG00000021920)	ENSATEG00000021672	NCBP2 (ENSATEG00000021649)	ENSATEG00000021643	ENSATEG00000021638	MELTF (ENSATEG00000021633)	ENSATEG00000021590
Zig-zag eel	MODERN SPECIES	18	ENSMAMG00000012752	ENSMAMG00000012718	ttc14 (ENSMAMG00000012687)	fxr1 (ENSMAMG00000012607)	dnajc19 (ENSMAMG00000012673)	sox2 (ENSMAMG00000012589)	ATP11B (ENSMAMG00000012551)	mccc1 (ENSMAMG00000012532)	ENSMAMG00000012509	ENSMAMG00000012500	ENSMAMG00000012399	ENSMAMG00000012349	ENSMAMG00000012343	ENSMAMG00000012326	stxbp3 (ENSMAMG00000012303)	ENSMAMG00000012225 ##22	ENSMAMG00000012208	HENMT1 (ENSMAMG00000012144)	ENSMAMG00000012116 ##26	ENSMAMG00000025224 ##27	ENSMAMG00000012109	tm4sf4 (ENSMAMG00000012057)	ENSMAMG00000012042	ENSMAMG00000012024	cp (ENSMAMG00000012009)	ENSMAMG00000026787	ENSMAMG00000011347	NCBP2 (ENSMAMG00000011314)	ENSMAMG00000011304	NCBP2AS2 (ENSMAMG00000011307)	MELTF (ENSMAMG00000011255)
Carangaria	ANCESTRAL SPECIES	7	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Seriola	ANCESTRAL SPECIES		ENSGT00390000013701	ENSGT01060000252104	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Yellowtail amberjack	MODERN SPECIES	3176	ENSSLDG00000018350	ENSSLDG00000018364	fxr1 (ENSSLDG00000018386)	dnajc19 (ENSSLDG00000018409)	sox2 (ENSSLDG00000018420)	ATP11B (ENSSLDG00000018445)	mccc1 (ENSSLDG00000018498)	ENSSLDG00000018523	ENSSLDG00000018538	PIK3CA (ENSSLDG00000018558)	ENSSLDG00000018593	ENSSLDG00000018611	ENSSLDG00000018641	ENSSLDG00000018661	stxbp3 (ENSSLDG00000018702)	FNDC7 (ENSSLDG00000018747) ##22	ENSSLDG00000018774	ENSSLDG00000018793	ENSSLDG00000018819	ENSSLDG00000018867	henmt1 (ENSSLDG00000018890)	fam102bb (ENSSLDG00000018949) ##26	slc25a24 (ENSSLDG00000018993) ##27	tmem69 (ENSSLDG00000019029)	tm4sf4 (ENSSLDG00000019049)	ENSSLDG00000019072	ENSSLDG00000019092	cp (ENSSLDG00000019109)	ENSSLDG00000019143	ENSSLDG00000019292	ncbp2 (ENSSLDG00000020381)
Greater amberjack	MODERN SPECIES		ENSSDUG00000016687	ttc14 (ENSSDUG00000016642)	ENSSDUG00000016630	fxr1 (ENSSDUG00000016557)	dnajc19 (ENSSDUG00000016541)	sox2 (ENSSDUG00000016532)	ATP11B (ENSSDUG00000016508)	mccc1 (ENSSDUG00000016424)	ENSSDUG00000016401	ENSSDUG00000016284	PIK3CA (ENSSDUG00000016208)	ZMAT3 (ENSSDUG00000016188)	ENSSDUG00000016156	ENSSDUG00000016127	stxbp3 (ENSSDUG00000016067)	ENSSDUG00000016050 ##22	ENSSDUG00000015941	henmt1 (ENSSDUG00000015914)	fam102bb (ENSSDUG00000015867) ##26	slc25a24 (ENSSDUG00000015831) ##27	tmem69 (ENSSDUG00000015817)	tm4sf4 (ENSSDUG00000015798)	ENSSDUG00000015778	ENSSDUG00000015768	cp (ENSSDUG00000015551)	ENSSDUG00000015469	ncbp2 (ENSSDUG00000015448)	fkbp2 (ENSSDUG00000015421)	ENSSDUG00000015417	MELTF (ENSSDUG00000015378)	ENSSDUG00000015212
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Tongue sole	MODERN SPECIES	11	ENSCSEG00000019545	LRRC24 (ENSCSEG00000019537)	zgc:171480 (ENSCSEG00000019533)	ndufa11 (ENSCSEG00000019529)	reep6 (ENSCSEG00000019523)	thop1 (ENSCSEG00000019508)	mccc1 (ENSCSEG00000019501)	ENSCSEG00000019497	ENSCSEG00000019496	ENSCSEG00000019492	PIK3CA (ENSCSEG00000019473)	ENSCSEG00000019463	RNF14 (ENSCSEG00000019448)	ENSCSEG00000019447	stxbp3 (ENSCSEG00000019442)	ENSCSEG00000019433 ##22	ENSCSEG00000019429	ENSCSEG00000019427	henmt1 (ENSCSEG00000019425)	fam102bb (ENSCSEG00000019409) ##26	tmem69 (ENSCSEG00000019407)	slc25a24 (ENSCSEG00000019401) ##27	tm4sf4 (ENSCSEG00000019397)	ENSCSEG00000019388	TM4SF1 (ENSCSEG00000019385)	cp (ENSCSEG00000019358)	ENSCSEG00000019338	fkbp2 (ENSCSEG00000019330)	ncbp2 (ENSCSEG00000019322)	ENSCSEG00000019317	MELTF (ENSCSEG00000019283)
Turbot	MODERN SPECIES	3	ENSSMAG00000019968	ENSSMAG00000019963	ENSSMAG00000019916 ##27	ENSSMAG00000019895 ##26	ENSSMAG00000019889	ENSSMAG00000019704	ENSSMAG00000019667	kng1 (ENSSMAG00000019641)	ENSSMAG00000019551	ENSSMAG00000019540	ENSSMAG00000019534	ENSSMAG00000037924	ENSSMAG00000023351	ENSSMAG00000019460	stxbp3 (ENSSMAG00000019435)	ENSSMAG00000019381 ##22	ENSSMAG00000019363 #23	ENSSMAG00000035807	ENSSMAG00000027499	ENSSMAG00000019337	sox2 (ENSSMAG00000019309)	dnajc19 (ENSSMAG00000019301)	fxr1 (ENSSMAG00000019240)	ttc14 (ENSSMAG00000019224)	ENSSMAG00000023012	ENSSMAG00000019215	ENSSMAG00000019148	ENSSMAG00000019102	ENSSMAG00000019085	si:ch211-198n5.11 (ENSSMAG00000019050)	ENSSMAG00000022429
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
European seabass	MODERN SPECIES	17	sox2 (ENSDLAG00005034867)	dnajc19 (ENSDLAG00005029415)	fxr1 (ENSDLAG00005020320)	ttc14 (ENSDLAG00005021228)	ENSDLAG00005027302	ENSDLAG00005021297	ENSDLAG00005006459	ENSDLAG00005034823	ENSDLAG00005006545	ENSDLAG00005006557	ENSDLAG00005006577	ENSDLAG00005029063	ENSDLAG00005006638	ENSDLAG00005006642	stxbp3 (ENSDLAG00005006702)	ENSDLAG00005007930 ##22	ENSDLAG00005007978	ENSDLAG00005015366	ENSDLAG00005004215	HENMT1 (ENSDLAG00005008006)	ENSDLAG00005029888 ##26	ENSDLAG00005008077 ##27	ENSDLAG00005008418	ENSDLAG00005008425	ENSDLAG00005008434	ENSDLAG00005008490	ENSDLAG00005029662	ENSDLAG00005009242	NCBP2 (ENSDLAG00005032995)	ENSDLAG00005011825	MELTF (ENSDLAG00005011829)
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005011092	ttc14 (ENSLCRG00005011096)	fxr1 (ENSLCRG00005011130)	dnajc19 (ENSLCRG00005014678)	sox2 (ENSLCRG00005014679)	ATP11B (ENSLCRG00005014687)	mccc1 (ENSLCRG00005015122)	ENSLCRG00005017408	ENSLCRG00005017410	ENSLCRG00005017411	PIK3CA (ENSLCRG00005017419)	ENSLCRG00005017430	RNF14 (ENSLCRG00005017434)	ENSLCRG00005017436	stxbp3 (ENSLCRG00005017443)	ENSLCRG00005017550 ##22	ENSLCRG00005017551	eaf2 (ENSLCRG00005017553)	si:dkey-91i10.2 (ENSLCRG00005017555)	tsn (ENSLCRG00005017556)	FAM124A (ENSLCRG00005017558)	serpine3 (ENSLCRG00005017559)	ints6 (ENSLCRG00005017581)	wdfy2 (ENSLCRG00005018750)	dhrs12 (ENSLCRG00005018800)	tmem69 (ENSLCRG00005018856)	slc25a24 (ENSLCRG00005018873) ##27	fam102bb (ENSLCRG00005019212) ##26	henmt1 (ENSLCRG00005019216)	tm4sf4 (ENSLCRG00005019219)	ENSLCRG00005019220
Gilthead seabream	MODERN SPECIES	2	ttc14 (ENSSAUG00010011576)	fxr1 (ENSSAUG00010007117)	Tim14 (ENSSAUG00010007093)	ENSSAUG00010007090	sox2 (ENSSAUG00010007089)	ATP11B (ENSSAUG00010006965)	mccc1 (ENSSAUG00010002097)	ENSSAUG00010001984	ENSSAUG00010001979	PIK3CA (ENSSAUG00010001967)	ENSSAUG00010001961	ENSSAUG00010001957	ENSSAUG00010001956	ENSSAUG00010001893	stxbp3 (ENSSAUG00010001436)	FNDC7 (ENSSAUG00010001386) ##22	ENSSAUG00010001377	ENSSAUG00010001364	ENSSAUG00010001354	ENSSAUG00010001347	ENSSAUG00010001334	henmt1 (ENSSAUG00010026592)	fam102bb (ENSSAUG00010026591) ##26	slc25a24 (ENSSAUG00010026551) ##27	tmem69 (ENSSAUG00010026549)	tm4sf4 (ENSSAUG00010026548)	ENSSAUG00010026546	ENSSAUG00010026545	cp (ENSSAUG00010026525)	ENSSAUG00010026215	ncbp2 (ENSSAUG00010026196)
Perciformes	ANCESTRAL SPECIES	8	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b	ENSGT00940000156262
Lumpfish	MODERN SPECIES	19	brdt (ENSCLMG00005014358)	tgfbr3 (ENSCLMG00005014421)	ENSCLMG00005014582	barhl2 (ENSCLMG00005014583)	lrrc8db (ENSCLMG00005014584)	ENSCLMG00005014585	ENSCLMG00005014586	ENSCLMG00005014587	kyat3.2 (ENSCLMG00005014590)	lmo4b (ENSCLMG00005014600)	HS2ST1 (ENSCLMG00005014603)	CLDN18 (ENSCLMG00005014605)	ENSCLMG00005014608	SOX14 (ENSCLMG00005014610)	stxbp3 (ENSCLMG00005014614)	ENSCLMG00005014777 ##22	cp (ENSCLMG00005014778)	ENSCLMG00005014779	ENSCLMG00005014780	tm4sf4 (ENSCLMG00005014784)	tmem69 (ENSCLMG00005014785)	ENSCLMG00005014787 ##27	fam102bb (ENSCLMG00005014835) ##26	henmt1 (ENSCLMG00005014837)	ENSCLMG00005014839	ENSCLMG00005014842	ncbp2 (ENSCLMG00005014854)	fkbp2 (ENSCLMG00005014855)	NCBP2AS2 (ENSCLMG00005000066)	MELTF (ENSCLMG00005000152)	ENSCLMG00005000510
Stickleback	MODERN SPECIES	8	ccn1 (ENSGACG00000006699)	ZNHIT6 (ENSGACG00000006695)	ENSGACG00000006637	zgc:65873 (ENSGACG00000006617)	ENSGACG00000006613	DNAI3 (ENSGACG00000006604)	MCOLN3 (ENSGACG00000006562)	ENSGACG00000006551 ##20	si:ch211-262h13.5 (ENSGACG00000006545)	ENSGACG00000006527	gpc1a (ENSGACG00000006519)	ENSGACG00000006515	nasp (ENSGACG00000006499)	ENSGACG00000006490	stxbp3 (ENSGACG00000006461)	ENSGACG00000006451 ##22	ENSGACG00000006445	henmt1 (ENSGACG00000006440)	fam102bb (ENSGACG00000006422) ##26	slc25a24 (ENSGACG00000006388) ##27	ENSGACG00000006382	tm4sf4 (ENSGACG00000006366)	ENSGACG00000006320	TM4SF1 (ENSGACG00000006308)	cp (ENSGACG00000006285)	ENSGACG00000006258	ncbp2 (ENSGACG00000006238)	NCBP2AS2 (ENSGACG00000006237)	fkbp2 (ENSGACG00000006229)	MELTF (ENSGACG00000006222)	ENSGACG00000006216
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00390000015458	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT01060000252104	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
Channel bull blenny	MODERN SPECIES	18	fxr1 (ENSCGOG00000001380)	dnajc19 (ENSCGOG00000002325)	ENSCGOG00000002332	ENSCGOG00000002335	ATP11B (ENSCGOG00000002429)	mccc1 (ENSCGOG00000004793)	ENSCGOG00000006972	ENSCGOG00000006973	PIK3CA (ENSCGOG00000006989)	ZMAT3 (ENSCGOG00000007325)	ENSCGOG00000007392	ENSCGOG00000007396	ENSCGOG00000007397	stxbp3 (ENSCGOG00000007419)	ENSCGOG00000009200	FNDC7 (ENSCGOG00000009208) ##22	henmt1 (ENSCGOG00000009212)	EEIG2 (ENSCGOG00000009214) ##26	slc25a24 (ENSCGOG00000009247) ##27	tmem69 (ENSCGOG00000009820)	tm4sf4 (ENSCGOG00000009823)	ENSCGOG00000009826	ENSCGOG00000009830	cp (ENSCGOG00000009833)	ENSCGOG00000009916	ncbp2 (ENSCGOG00000011684)	fkbp2 (ENSCGOG00000011696)	NCBP2AS2 (ENSCGOG00000011709)	MELTF (ENSCGOG00000011715)	ENSCGOG00000011940	LRRC7 (ENSCGOG00000017477)
Pike perch	MODERN SPECIES	59	hps3 (ENSSLUG00000013002)	ENSSLUG00000013012	ttc14 (ENSSLUG00000009678)	ENSSLUG00000009681	fxr1 (ENSSLUG00000009708)	dnajc19 (ENSSLUG00000010014)	ATP11B (ENSSLUG00000010144)	mccc1 (ENSSLUG00000013622)	ENSSLUG00000014011	kng1 (ENSSLUG00000014020)	PIK3CA (ENSSLUG00000014031)	ZMAT3 (ENSSLUG00000014062)	ENSSLUG00000014164	ENSSLUG00000014175	stxbp3 (ENSSLUG00000014209)	ENSSLUG00000014440 ##22	ENSSLUG00000014445	henmt1 (ENSSLUG00000014450)	fam102bb (ENSSLUG00000014456) ##26	slc25a24 (ENSSLUG00000014480) ##27	tmem69 (ENSSLUG00000014578)	ENSSLUG00000014582	ENSSLUG00000014591
Ballan wrasse	MODERN SPECIES	921										ENSLBEG00000004639	ENSLBEG00000004662	ENSLBEG00000004681	ENSLBEG00000004702	ENSLBEG00000004727	stxbp3 (ENSLBEG00000004754)	ENSLBEG00000004806 ##22
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000166222	ENSGT00940000157153.x	ENSGT00390000013701	ENSGT00950000183189.a.b.a.h	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C.f	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Tetraodon	MODERN SPECIES		exoc2 (ENSTNIG00000008223)	ENSTNIG00000008222	ENSTNIG00000004324	ttc14 (ENSTNIG00000003789)	fxr1 (ENSTNIG00000003790)	dnajc19 (ENSTNIG00000003791)	sox2 (ENSTNIG00000003970)	ATP11B (ENSTNIG00000006777)	mccc1 (ENSTNIG00000006778)	ENSTNIG00000006779	PIK3CA (ENSTNIG00000006780)	ZMAT3 (ENSTNIG00000006781)	ENSTNIG00000006782	ENSTNIG00000006783	stxbp3 (ENSTNIG00000006784)	ENSTNIG00000006785 ##22	ENSTNIG00000006982	ENSTNIG00000006786	ENSTNIG00000005506	henmt1 (ENSTNIG00000003313)	EEIG2 (ENSTNIG00000003314) ##26	slc25a24 (ENSTNIG00000003315) ##27	tmem69 (ENSTNIG00000003316)	tm4sf4 (ENSTNIG00000003317)	ENSTNIG00000000290	TM4SF1 (ENSTNIG00000003318)	cp (ENSTNIG00000003319)	ENSTNIG00000006066	ncbp2 (ENSTNIG00000006065)	fkbp2 (ENSTNIG00000001553)	MELTF (ENSTNIG00000006064)
Fugu	MODERN SPECIES	12	ttc14 (ENSTRUG00000001224)	fxr1 (ENSTRUG00000003486)	dnajc19 (ENSTRUG00000004352)	sox2 (ENSTRUG00000004861)	ENSTRUG00000031205	ATP11B (ENSTRUG00000002878)	ENSTRUG00000033406	mccc1 (ENSTRUG00000003436)	ENSTRUG00000024510	ENSTRUG00000003951	PIK3CA (ENSTRUG00000004021)	ENSTRUG00000031285	ENSTRUG00000020845	ENSTRUG00000005137	stxbp3 (ENSTRUG00000005412)	FNDC7 (ENSTRUG00000006252) ##22	ENSTRUG00000029469	ENSTRUG00000030298	ENSTRUG00000030385	ENSTRUG00000028319	ENSTRUG00000032789	ENSTRUG00000029768	ENSTRUG00000030627	ENSTRUG00000031390	ENSTRUG00000030511	henmt1 (ENSTRUG00000018279)	fam102bb (ENSTRUG00000030064) ##26	slc25a24 (ENSTRUG00000018295) ##27	tmem69 (ENSTRUG00000018308)	tm4sf4 (ENSTRUG00000018310)	ENSTRUG00000018318
Pinecone sodierfish	MODERN SPECIES	18	ENSMMDG00005019337	ENSMMDG00005019335	ENSMMDG00005019330	fxr1 (ENSMMDG00005016938)	dnajc19 (ENSMMDG00005016880)	sox2 (ENSMMDG00005016876)	ATP11B (ENSMMDG00005011889)	mccc1 (ENSMMDG00005007241)	ENSMMDG00005007138	kng1 (ENSMMDG00005007133)	PIK3CA (ENSMMDG00005007127)	ENSMMDG00005007018	RNF14 (ENSMMDG00005007010)	ENSMMDG00005007006	stxbp3 (ENSMMDG00005006114)	FNDC7 (ENSMMDG00005006091) ##22	ENSMMDG00005006089	ENSMMDG00005006086	ENSMMDG00005006084	ENSMMDG00005006080	henmt1 (ENSMMDG00005006076)	fam102bb (ENSMMDG00005006071) ##26	slc25a24 (ENSMMDG00005006017) ##27	tmem69 (ENSMMDG00005005994)	tm4sf4 (ENSMMDG00005005991)	ENSMMDG00005005983	cp (ENSMMDG00005003371)	tlr4ba (ENSMMDG00005003262)	ENSMMDG00005003128	ncbp2 (ENSMMDG00005003079)	fkbp2 (ENSMMDG00005003075)
Cod	MODERN SPECIES	3	hsd17b7 (ENSGMOG00000000160)	serbp1a (ENSGMOG00000015470)	lrp8 (ENSGMOG00000002561)	cfap144 (ENSGMOG00000031988)	EBNA1BP2 (ENSGMOG00000004150)	TMEM125 (ENSGMOG00000030092)	ap1m3 (ENSGMOG00000004130)	ENSGMOG00000009824	ENSGMOG00000004733	ENSGMOG00000004711	ENSGMOG00000031193	ENSGMOG00000008773	ENSGMOG00000023155	ENSGMOG00000008740	ENSGMOG00000008719	ENSGMOG00000008701 ##22	ENSGMOG00000031127 #23	ENSGMOG00000029375	ENSGMOG00000025844	HENMT1 (ENSGMOG00000008674)	ENSGMOG00000008658 ##26	ENSGMOG00000008646 ##27	ENSGMOG00000024513	tm4sf4 (ENSGMOG00000008633)	ENSGMOG00000008625	ENSGMOG00000008617	cp (ENSGMOG00000008595)	ENSGMOG00000027679	NCBP2 (ENSGMOG00000018657)	ENSGMOG00000018655	NCBP2AS2 (ENSGMOG00000030915)
Clupeocephala	ANCESTRAL SPECIES	126	ENSGT00940000157155	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594
Otomorpha	ANCESTRAL SPECIES	164	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157155	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01040000240916	ENSGT00990000204320	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.r	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27
Clupeiformes	ANCESTRAL SPECIES	178												ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004798	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00950000183190.a.a.b.c.b ##28	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000008371.a	ENSGT00390000003574.a	ENSGT00940000154149.b.a.g.b	ENSGT00530000063646.a	ENSGT00390000001254	ENSGT00940000155635	ENSGT00940000154614	ENSGT00940000154654.a.b.h
Denticle herring	MODERN SPECIES	270												ENSDCDG00000012296	gpsm2l (ENSDCDG00000010764) ##20	stxbp3 (ENSDCDG00000010797)	ENSDCDG00000012363 ##22	ENSDCDG00000012379 #23	ENSDCDG00000012389	ENSDCDG00000012401	fam102bb (ENSDCDG00000012430) ##26	slc25a24 (ENSDCDG00000012454) ##27	ENSDCDG00000012503	ENSDCDG00000012529 ##28	ENSDCDG00000012581	prrx1b (ENSDCDG00000012595)	ENSDCDG00000012670	gorab (ENSDCDG00000012674)	ntmt2 (ENSDCDG00000012679)	kifap3a (ENSDCDG00000012684)	niban1a (ENSDCDG00000013239)	TRMT1L (ENSDCDG00000012707)	ENSDCDG00000013314
Atlantic herring	MODERN SPECIES	14	VWA5B2 (ENSCHAG00000014299) #11	ENSCHAG00000014267	PRSS56 (ENSCHAG00000014190) #12	chrng (ENSCHAG00000014009) #13	ENSCHAG00000013964 #14	eif4e2 (ENSCHAG00000013908) #15	CAPN10 (ENSCHAG00000013868) #16	ccl20a.3 (ENSCHAG00000013835)	ENSCHAG00000013805	CAMSAP2 (ENSCHAG00000013669) #24	WDR47 (ENSCHAG00000013479) #19	ENSCHAG00000012930 #20	ENSCHAG00000012910	ENSCHAG00000012908	FNDC7 (ENSCHAG00000012892) #22	ENSCHAG00000012732 #23	ENSCHAG00000012712	prpf38b (ENSCHAG00000012703) #25	eeig2a (ENSCHAG00000012638) #26	ENSCHAG00000012406 #27	HOMER3 (ENSCHAG00000012378)	upf1 (ENSCHAG00000011953)	pgpep1 (ENSCHAG00000011933)	jund (ENSCHAG00000011907)	loxl5b (ENSCHAG00000011885)	nmrk2 (ENSCHAG00000011851)	ATCAY (ENSCHAG00000011833)	rx2 (ENSCHAG00000011826)	ENSCHAG00000011476	klf2b (ENSCHAG00000011452)	ranbp3b (ENSCHAG00000011015)
Otophysi	ANCESTRAL SPECIES	275												ENSGT01050000244939.a.a.b.a.b	ENSGT00550000075121	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT01030000234528.B.b.b.cb	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096
Characiphysae	ANCESTRAL SPECIES	137	ENSGT00940000158506	ENSGT00940000156952.a.b	ENSGT00950000183214.a.a.a.a	ENSGT00940000155270.j	ENSGT01090000259987.a.b.d.b.a.k	ENSGT00940000155003.e.a.e	ENSGT01090000259987.a.b.d.b.a.l	ENSGT00940000155003.f	ENSGT00940000165563.b	ENSGT00940000154801.m.b	ENSGT00950000182860.a.a.b.a.a.a.b	ENSGT00950000183208.B.f.b	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26
Characiphysae_b	ANCESTRAL SPECIES	111		ENSGT00940000156952.a.b	ENSGT00950000183214.a.a.a.a	ENSGT00940000155270.j	ENSGT01090000259987.a.b.d.b.a.k	ENSGT00940000155003.e.a.e	ENSGT01090000259987.a.b.d.b.a.l	ENSGT00940000155003.f	ENSGT00940000165563.b	ENSGT00940000154801.m.b	ENSGT00950000182860.a.a.b.a.a.a.b	ENSGT00950000183208.B.f.b	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00390000015219	ENSGT00390000003680.a.a.a	ENSGT00940000163212.A	ENSGT00940000157783	ENSGT01030000234556.a.b.b	ENSGT00940000159936	ENSGT00390000000566	ENSGT00940000159779.c	ENSGT00940000155795.e	ENSGT00940000155561.m #19	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00390000013973.A.a.c.b.b.p
Characoidei	ANCESTRAL SPECIES	63			ENSGT00940000156952.a.b	ENSGT00950000183214.a.a.a.a	ENSGT00940000155270.j	ENSGT01090000259987.a.b.d.b.a.k	ENSGT01090000259987.a.b.d.b.a.l	ENSGT00940000155003.f	ENSGT00940000165563.b	ENSGT00940000154801.m.b	ENSGT00950000182860.a.a.b.a.a.a.b	ENSGT00950000183208.B.f.b	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00390000015219	ENSGT00390000003680.a.a.a	ENSGT00940000163212.A	ENSGT00940000154906.C.d	ENSGT00940000153968.a.a.f	ENSGT00940000156635	ENSGT00940000166901	ENSGT00390000007694	ENSGT00390000015361	ENSGT00530000063557.b	ENSGT00940000155483.f	ENSGT00940000163420
Mexicana tetra	MODERN SPECIES	52	ENSAMXG00000031039	ENSAMXG00000029225	ENSAMXG00000009308	ENSAMXG00000040074	ENSAMXG00000011804	ENSAMXG00000025543	SEMA6B (ENSAMXG00000003192)	abhd17aa (ENSAMXG00000042048)	cdc34b (ENSAMXG00000041885)	chmp5b (ENSAMXG00000033472)	ENSAMXG00000024969	ENSAMXG00000029828	ENSAMXG00000038453	ENSAMXG00000040295	ENSAMXG00000043098 #22	ENSAMXG00000039598 #23	ENSAMXG00000014326	ENSAMXG00000039494	eeig2a (ENSAMXG00000014288) #26	dnaaf6 (ENSAMXG00000037030)	PIP4P1 (ENSAMXG00000014236)	ENSAMXG00000035599	zgc:152670 (ENSAMXG00000014215)	lig1 (ENSAMXG00000014178)	mpz (ENSAMXG00000032091)	atp1a2a (ENSAMXG00000014095)	sdhc (ENSAMXG00000031375)	cadm3 (ENSAMXG00000030593)	kirrel1b (ENSAMXG00000041455)	WDR47 (ENSAMXG00000040612) #19
Cyprinoidei	ANCESTRAL SPECIES	83												ENSGT01050000244939.a.a.b.a.b.d	ENSGT00550000075121	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a.q	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a.fc.a	ENSGT00940000162200.a.a	ENSGT00940000167983	ENSGT00950000183177.a.b.a	ENSGT00940000158340	ENSGT00390000007586.a.b	ENSGT00940000160357	ENSGT01100000263547.a.b.b.a.a.a.a.a	ENSGT00940000159588	ENSGT01030000235096	ENSGT00940000155482
Cyprininae	ANCESTRAL SPECIES	805												ENSGT01100000263547.a.a.a.c.a	ENSGT00550000075121.a	ENSGT00940000157607.c	ENSGT00390000004674.i.b.a ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a.b	ENSGT00950000183204.b.b.a.g	ENSGT00940000153467.a.a.fc.b.a	ENSGT00950000183177.a.b.a.f
Cyprininae_a	ANCESTRAL SPECIES	621												ENSGT01100000263547.a.a.a.c.a	ENSGT00550000075121.a	ENSGT00940000157607.c	ENSGT00390000004674.i.b.a ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a.b	ENSGT00940000157064.a.b.b.a.a.q.a	ENSGT00950000183204.b.b.a.g	ENSGT00940000153467.a.a.fc.b.a
Golden-line barbel	MODERN SPECIES	1035						ENSSGRG00000054848	klf3 (ENSSGRG00000054852)	fam114a1 (ENSSGRG00000054855)	klhl5 (ENSSGRG00000054857)	ENSSGRG00000054858	ENSSGRG00000054861	ENSSGRG00000054862	rabggta (ENSSGRG00000054863)	stxbp3 (ENSSGRG00000054872)	ENSSGRG00000054900 ##22	ENSSGRG00000054902 #23	ENSSGRG00000054903	ENSSGRG00000054905	fbxo30b (ENSSGRG00000054906)	ENSSGRG00000054907
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	11	txndc12 (ENSCARG00000001846)	ENSCARG00000001840	zgc:153615 (ENSCARG00000001832)	ENSCARG00000001824	selenot1a (ENSCARG00000001815)	zgc:92744 (ENSCARG00000001813)	gpt (ENSCARG00000001280)	ENSCARG00000001185	c1ql3b (ENSCARG00000001184)	pter (ENSCARG00000001181)	ENSCARG00000001112	ENSCARG00000001094	ENSCARG00000001092	egfra (ENSCARG00000000847)	cables1 (ENSCARG00000000658)	ENSCARG00000000635 #23	prpf38b (ENSCARG00000000617) #25	eeig2a (ENSCARG00000000609) #26	pip4p1a (ENSCARG00000000599)	ENSCARG00000000414	ENSCARG00000000260	ENSCARG00000000249	ENSCARG00000000242	klhl24a (ENSCARG00000000225)	YEATS2 (ENSCARG00000000177)	MAP6D1 (ENSCARG00000000145)	ENSCARG00000005437	camk2n1a (ENSCARG00000005431) #8	mul1a (ENSCARG00000005423) #9	alg3 (ENSCARG00000005396) #10	ENSCARG00000005373 #12
Goldfish	MODERN SPECIES	57	slc6a1a (ENSCARG00000040336)	ENSCARG00000040315	tnnc1a (ENSCARG00000040285)	atp6ap1a (ENSCARG00000040196)	tafazzin (ENSCARG00000040009)	ENSCARG00000039959	ndnl2 (ENSCARG00000039948)	ENSCARG00000039868	smc1al (ENSCARG00000039472)	ENSCARG00000034650	zgc:113423 (ENSCARG00000034641)	ENSCARG00000034632	rabggta (ENSCARG00000034551)	stxbp3 (ENSCARG00000032086)	ENSCARG00000031922 ##22	ENSCARG00000031901 #23	ENSCARG00000031889	fbxo30b (ENSCARG00000031856)	UTRN (ENSCARG00000030783)	ENSCARG00000030746	slc34a2b (ENSCARG00000030670)	ENSCARG00000030645	WNT7A (ENSCARG00000030635)	zgc:171857 (ENSCARG00000030621)	ENSCARG00000030590	adtrp1 (ENSCARG00000030578)	sgk2a (ENSCARG00000030347)	arl6ip5b (ENSCARG00000030336)	srsf6a (ENSCARG00000030325)	zgc:113278 (ENSCARG00000029707)	aar2 (ENSCARG00000029677)
Euteleosteomorpha	ANCESTRAL SPECIES	70	ENSGT00390000007658	ENSGT00530000063790.a.a	ENSGT00940000177205	ENSGT00940000163583	ENSGT00390000017201	ENSGT00940000155151.b.d	ENSGT00940000157892	ENSGT00390000017398	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a ##20	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT00940000156539	ENSGT00390000016650.c.a	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a	ENSGT00390000003156.b	ENSGT01060000248556.B	ENSGT00940000154327.b.f	ENSGT00940000160740
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00390000004674.j #23
Salmoninae	ANCESTRAL SPECIES	104	ENSGT00390000007658	ENSGT00530000063790.a.a.d	ENSGT00940000154682.C.x	ENSGT00940000161548	ENSGT00940000154682.C.w	ENSGT00940000163583.y.b	ENSGT00390000017201	ENSGT00940000155151.b.d.e	ENSGT00940000157892.m	ENSGT00390000017398.y	ENSGT01030000234635.a.a.a.a.f	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a.f ##20	ENSGT00940000157607.k.b	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT00420000029753.b.ab	ENSGT00390000016650.c.a.d	ENSGT00940000156539.w	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a.d	ENSGT00390000003156.b.f	ENSGT01060000248556.B	ENSGT00940000154327.b.f.c	ENSGT00940000160740.e
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00530000063790.a.a.d	ENSGT00940000154682.C.x	ENSGT00940000154682.C.w	ENSGT00940000163514.C	ENSGT00940000163583.y.b	ENSGT00390000017201	ENSGT00940000155151.b.d.e	ENSGT01060000249603	ENSGT00940000157892.m	ENSGT00390000017398.y	ENSGT01030000234635.a.a.a.a.f	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a.f ##20	ENSGT00940000157607.k.b	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT00420000029753.b.ab	ENSGT00390000016650.c.a.d	ENSGT00940000156539.w	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a.d	ENSGT00390000003156.b.f	ENSGT01060000248556.B	ENSGT00940000154327.b.f.c	ENSGT00940000160740.e
Salmo	ANCESTRAL SPECIES	14	ENSGT00530000063790.a.a.d	ENSGT00940000154682.C.x	ENSGT00940000154682.C.w	ENSGT00940000163514.C	ENSGT00940000163583.y.b	ENSGT00390000017201	ENSGT00940000155151.b.d.e	ENSGT01060000249603	ENSGT00940000157892.m	ENSGT00390000017398.y	ENSGT01030000234635.a.a.a.a.f	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a.f ##20	ENSGT00940000157607.k.b	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT00420000029753.b.ab	ENSGT00390000016650.c.a.d	ENSGT00940000156539.w	ENSGT00940000163309	ENSGT00390000002659	ENSGT01020000230412.A.c.b.c.a.d	ENSGT00390000003156.b.f	ENSGT01060000248556.B	ENSGT00940000154327.b.f.c	ENSGT00940000160740.e
River trout	MODERN SPECIES	14	lurap1 (ENSSTUG00000037087)	CLCA2 (ENSSTUG00000035765)	clca1 (ENSSTUG00000035394)	ENSSTUG00000035355	ENSSTUG00000035344	ZNHIT6 (ENSSTUG00000035338)	ccn1 (ENSSTUG00000035314)	ENSSTUG00000035307	DDAH1 (ENSSTUG00000035290)	zgc:65873 (ENSSTUG00000035280)	SYDE2 (ENSSTUG00000035266)	DNAI3 (ENSSTUG00000034721)	MCOLN3 (ENSSTUG00000034558)	gpsm2l (ENSSTUG00000034497) ##20	stxbp3 (ENSSTUG00000034280)	ENSSTUG00000034243 #23	ENSSTUG00000034233	ENSSTUG00000034219	henmt1 (ENSSTUG00000034206)	EEIG2 (ENSSTUG00000034156) ##26	slc25a24 (ENSSTUG00000034006) ##27	tmem69 (ENSSTUG00000033986)	GPBP1L1 (ENSSTUG00000033965)	nasp (ENSSTUG00000033895)	akr1a1b (ENSSTUG00000033703)	aldh9a1a.1 (ENSSTUG00000033347)	tmco1 (ENSSTUG00000033320)	uck2a (ENSSTUG00000033244)	magoh (ENSSTUG00000033225)	cpt2 (ENSSTUG00000033156)	scp2b (ENSSTUG00000033147)
Acanthomorphata	ANCESTRAL SPECIES	116	ENSGT00390000017398	ENSGT00990000211775	ENSGT01030000234635.a.a.a.a	ENSGT00940000156924	ENSGT00950000183036.a.a.g	ENSGT00940000154667.b.a ##20	ENSGT00950000182930.D	ENSGT00940000155297.hb.b	ENSGT01050000244897.a.a.b.b	ENSGT01050000244955.b.c	ENSGT00390000016650.c.a	ENSGT00940000167241	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265	ENSGT00940000164867.b
Cod	MODERN SPECIES	3	serbp1a (ENSGMOG00000015470)	lrp8 (ENSGMOG00000002561)	cfap144 (ENSGMOG00000031988)	EBNA1BP2 (ENSGMOG00000004150)	TMEM125 (ENSGMOG00000030092)	ap1m3 (ENSGMOG00000004130)	ENSGMOG00000009824	ENSGMOG00000004733	ENSGMOG00000004711	ENSGMOG00000031193	ENSGMOG00000008773	ENSGMOG00000023155	ENSGMOG00000008740	ENSGMOG00000008719	ENSGMOG00000008701 ##22	ENSGMOG00000031127 #23	ENSGMOG00000029375	ENSGMOG00000025844	HENMT1 (ENSGMOG00000008674)	ENSGMOG00000008658 ##26	ENSGMOG00000008646 ##27	ENSGMOG00000024513	tm4sf4 (ENSGMOG00000008633)	ENSGMOG00000008625	ENSGMOG00000008617	cp (ENSGMOG00000008595)	ENSGMOG00000027679	NCBP2 (ENSGMOG00000018657)	ENSGMOG00000018655	NCBP2AS2 (ENSGMOG00000030915)	MELTF (ENSGMOG00000018637)
Euacanthomorphacea	ANCESTRAL SPECIES	31	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Percomorphaceae	ANCESTRAL SPECIES	32	ENSGT00390000015458	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00940000180153	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00980000198596.B	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Carangaria	ANCESTRAL SPECIES																	ENSGT00390000004674.j #23
Pleuronectoidei	ANCESTRAL SPECIES																	ENSGT00390000004674.j #23
Turbot	MODERN SPECIES	3	ENSSMAG00000019963	ENSSMAG00000019916 ##27	ENSSMAG00000019895 ##26	ENSSMAG00000019889	ENSSMAG00000019704	ENSSMAG00000019667	kng1 (ENSSMAG00000019641)	ENSSMAG00000019551	ENSSMAG00000019540	ENSSMAG00000019534	ENSSMAG00000037924	ENSSMAG00000023351	ENSSMAG00000019460	stxbp3 (ENSSMAG00000019435)	ENSSMAG00000019381 ##22	ENSSMAG00000019363 #23	ENSSMAG00000035807	ENSSMAG00000027499	ENSSMAG00000019337	sox2 (ENSSMAG00000019309)	dnajc19 (ENSSMAG00000019301)	fxr1 (ENSSMAG00000019240)	ttc14 (ENSSMAG00000019224)	ENSSMAG00000023012	ENSSMAG00000019215	ENSSMAG00000019148	ENSSMAG00000019102	ENSSMAG00000019085	si:ch211-198n5.11 (ENSSMAG00000019050)	ENSSMAG00000022429	ENSSMAG00000019019
Anabantaria	ANCESTRAL SPECIES																	ENSGT00390000004674.j #23
Anabantoidei	ANCESTRAL SPECIES																	ENSGT00390000004674.j #23
Siamese fighting fish	MODERN SPECIES	15	sox2 (ENSBSLG00000004745)	sox2 (ENSBSLG00000004255)	ATP11B (ENSBSLG00000003903)	mccc1 (ENSBSLG00000002699)	ENSBSLG00000002494	ENSBSLG00000002480	PIK3CA (ENSBSLG00000002314)	ENSBSLG00000002185	ENSBSLG00000001857	ENSBSLG00000001848	ZMAT3 (ENSBSLG00000001831)	ENSBSLG00000001819	ENSBSLG00000001806	stxbp3 (ENSBSLG00000001607)	ENSBSLG00000001577	ENSBSLG00000001572 #23	ENSBSLG00000001551	henmt1 (ENSBSLG00000001541)	fam102bb (ENSBSLG00000001531) ##26	ENSBSLG00000001362 ##27	tmem69 (ENSBSLG00000001263)	tm4sf4 (ENSBSLG00000001246)	ENSBSLG00000001228	TM4SF1 (ENSBSLG00000001191)	cp (ENSBSLG00000000656)	gpx7 (ENSBSLG00000018007)	TUT4 (ENSBSLG00000016281)	RHPN1 (ENSBSLG00000016199)	atpaf1 (ENSBSLG00000016188)	ENSBSLG00000016175	ENSBSLG00000016165
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00950000183190.a.a.a.a.b ##28	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.C	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.f #35
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.e ##35	ENSGT00510000049027.d #36	ENSGT00390000009230.b #37
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00390000004674.i.a #22	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.e.a.a ##35	ENSGT00510000049027.d #36	ENSGT00390000009230.b #37
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.e.b ##35	ENSGT00510000049027.d #36	ENSGT00390000009230.b #37
Channel bull blenny	MODERN SPECIES	8	mul1a (ENSCGOG00000010064) #9	alg3 (ENSCGOG00000010066) #10	ENSCGOG00000010085 #11	ENSCGOG00000010086 #12	chrng (ENSCGOG00000010089) #13	ENSCGOG00000010105 #14	eif4e2 (ENSCGOG00000010109) #15	CAPN10 (ENSCGOG00000010116) #16	ENSCGOG00000010356 #18	ENSCGOG00000010368	CAMSAP2 (ENSCGOG00000010375) #24	WDR47 (ENSCGOG00000010600) #19	ENSCGOG00000010904 #20	ENSCGOG00000010912	ENSCGOG00000010919 #22	ENSCGOG00000010923 #23	ENSCGOG00000010927	eeig2a (ENSCGOG00000010934) #26	ENSCGOG00000010953 #27	PRKAB2 (ENSCGOG00000011491)	ENSCGOG00000011527 #28	ENSCGOG00000011528 #28	ENSCGOG00000011532 #28	tm6sf2a (ENSCGOG00000011535) #29	ENSCGOG00000011544 #30	SLC25A42 (ENSCGOG00000011556)	ARMC6 (ENSCGOG00000011565) #31	ENSCGOG00000011569 #33	NDUFA13 (ENSCGOG00000011572) #34	cirbpa (ENSCGOG00000011580) ##35	ENSCGOG00000011585 #36
Eupecaria_C	ANCESTRAL SPECIES	135																ENSGT00390000004674.j #23	ENSGT00940000169454 #25
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622.f #35	ENSGT00510000049027.d #36	ENSGT00390000009230.b #37
European seabass	MODERN SPECIES		camk2n1a (ENSDLAG00005000346) #8	mul1a (ENSDLAG00005033371) #9	alg3 (ENSDLAG00005026331) #10	ENSDLAG00005000332 #11	ENSDLAG00005000327 #12	chrng (ENSDLAG00005000305) #13	ENSDLAG00005000281 #14	eif4e2 (ENSDLAG00005000271) #15	ENSDLAG00005000250 #16	ENSDLAG00005000231 #17	ENSDLAG00005000222 #18	ENSDLAG00005000111 #19	ENSDLAG00005000077 #20	ENSDLAG00005025234 #21	ENSDLAG00005025229 #22	ENSDLAG00005025227 #23	ENSDLAG00005000160 #24	prpf38b (ENSDLAG00005025221) #25	eeig2a (ENSDLAG00005025216) #26	ENSDLAG00005031899 #27	ENSDLAG00005025119 #28	ENSDLAG00005034749 #29	ENSDLAG00005025115 #30	ENSDLAG00005025106 #31	MAU2 (ENSDLAG00005025001) #32	ENSDLAG00005024979 #33	NDUFA13 (ENSDLAG00005026360) #34	ENSDLAG00005030125 #35	ENSDLAG00005024964 #36	ENSDLAG00005033484 #37	ENSDLAG00005024937
Large yellow croaker	MODERN SPECIES	483	ENSLCRG00005004951 #12	ENSLCRG00005004952	chrng (ENSLCRG00005004957) #13	ENSLCRG00005005037 #14	eif4e2 (ENSLCRG00005005042) #15	CAPN10 (ENSLCRG00005005119) #16	ENSLCRG00005005167 #17	ENSLCRG00005005172 #17	ENSLCRG00005005173 #18	WDR47 (ENSLCRG00005005184) #19	CAMSAP2 (ENSLCRG00005005228) #24	ENSLCRG00005005243 #20	ENSLCRG00005005965 #21	ENSLCRG00005005969 #22	ENSLCRG00005005971	ENSLCRG00005005973 #23	prpf38b (ENSLCRG00005005975) #25	eeig2a (ENSLCRG00005005979) #26	ENSLCRG00005005985 #27	PRKAB2 (ENSLCRG00005006005)	ENSLCRG00005006008 #28	tm6sf2a (ENSLCRG00005006010) #29	ENSLCRG00005006013 #30	SLC25A42 (ENSLCRG00005006016)	ARMC6 (ENSLCRG00005006018) #31	MAU2 (ENSLCRG00005006019) #32	ENSLCRG00005006021 #33	NDUFA13 (ENSLCRG00005006023) #34	cirbpa (ENSLCRG00005006025) #35	ENSLCRG00005006026 #36	ENSLCRG00005006032 #37
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00940000178727	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT01050000244823.d.b.b.b	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Oryzias	ANCESTRAL SPECIES	5	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866.q.a	ENSGT00940000155866.q.b	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00390000012141.a #9	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35	ENSGT00510000049027.d #36
Chinese medaka	MODERN SPECIES	1097	ENSOSIG00000001045 #7	camk2n1a (ENSOSIG00000001043) #8	mul1a (ENSOSIG00000001041) #9	alg3 (ENSOSIG00000001038) #10	ENSOSIG00000001031 #11	ENSOSIG00000001024 #12	ENSOSIG00000001021 #14	eif4e2 (ENSOSIG00000001014) #15	CAPN10 (ENSOSIG00000001009) #16	ENSOSIG00000000964 #17	ENSOSIG00000000958 #18	ticam1 (ENSOSIG00000000956)	CAMSAP2 (ENSOSIG00000000951) #24	WDR47 (ENSOSIG00000000934) #19	FNDC7 (ENSOSIG00000000866) #22	ENSOSIG00000000836 #23	ENSOSIG00000000828	ENSOSIG00000000804	eeig2a (ENSOSIG00000022325) #26	ENSOSIG00000022293 #27	PRKAB2 (ENSOSIG00000022272)	ENSOSIG00000022268 ##28	ENSOSIG00000022263 #28	tm6sf2a (ENSOSIG00000022260) #29	ENSOSIG00000022249 #30	SLC25A42 (ENSOSIG00000022218)	ARMC6 (ENSOSIG00000022208) #31	ENSOSIG00000022205 #33	NDUFA13 (ENSOSIG00000022202) #34	cirbpa (ENSOSIG00000022200) #35	ENSOSIG00000022190 #37
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT01000000216191	ENSGT00940000169190	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866.q.a	ENSGT00940000155866.q.b	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Indian medaka	MODERN SPECIES	13	ttc14 (ENSOMEG00000011795)	fxr1 (ENSOMEG00000011753)	dnajc19 (ENSOMEG00000011655)	sox2 (ENSOMEG00000011636)	ATP11B (ENSOMEG00000011605)	mccc1 (ENSOMEG00000011470)	ENSOMEG00000011439	kng1 (ENSOMEG00000011412)	PIK3CA (ENSOMEG00000011383)	ENSOMEG00000011303	ENSOMEG00000011259	ENSOMEG00000011225	ENSOMEG00000011198	stxbp3 (ENSOMEG00000011180)	FNDC7 (ENSOMEG00000011142) ##22	ENSOMEG00000011097 #23	ENSOMEG00000011070	ENSOMEG00000011001	henmt1 (ENSOMEG00000010988)	fam102bb (ENSOMEG00000010933) ##26	slc25a24 (ENSOMEG00000010867) ##27	tmem69 (ENSOMEG00000010792)	tm4sf4 (ENSOMEG00000010763)	ENSOMEG00000010724	TM4SF1 (ENSOMEG00000010695)	cp (ENSOMEG00000010674)	cp (ENSOMEG00000010618)	ENSOMEG00000010559	ncbp2 (ENSOMEG00000010498)	fkbp2 (ENSOMEG00000000250)	NCBP2AS2 (ENSOMEG00000010453)
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308.b	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Poecilia	ANCESTRAL SPECIES	16	ENSGT00390000013904 #10	ENSGT00940000157096 #11	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01050000245892	ENSGT00940000177308.b	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00390000004674.i.a #22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35	ENSGT00510000049027.d #36
Guppy	MODERN SPECIES	447	ENSPREG00000016232 #11	ENSPREG00000016176 #12	ENSPREG00000016214	chrng (ENSPREG00000016151) #13	eif4e2 (ENSPREG00000016132) #15	ENSPREG00000016090 #14	CAPN10 (ENSPREG00000016052) #16	ENSPREG00000016032	ENSPREG00000016013	ENSPREG00000016009	CAMSAP2 (ENSPREG00000015956) #24	WDR47 (ENSPREG00000015872) #19	ENSPREG00000015791 #20	ENSPREG00000015727 #21	FNDC7 (ENSPREG00000015691) #22	ENSPREG00000015669 #23	ENSPREG00000015635	ENSPREG00000015599	eeig2a (ENSPREG00000015585) #26	ENSPREG00000015554 #27	PRKAB2 (ENSPREG00000015532)	lyrm5a (ENSPREG00000015524)	dnai7 (ENSPREG00000015512)	ENSPREG00000015462 ##28	ENSPREG00000015434	tm6sf2a (ENSPREG00000015416) #29	ENSPREG00000015333 #30	brinp2 (ENSPREG00000015303)	klhl20 (ENSPREG00000015265)	lhx8a (ENSPREG00000015235)	ENSPREG00000015212
NAME_4	ANCESTRAL SPECIES	62	ENSGT00950000182865.b.a.b.b.a.a.a	ENSGT00390000013701	ENSGT00950000183189.a.b.a	ENSGT00940000154384	ENSGT00940000160614	ENSGT00940000156162.C	ENSGT00940000156941	ENSGT00950000182899.C.a	ENSGT00950000182930.B	ENSGT00940000155531.a.a	ENSGT00730000111202	ENSGT00940000154507.t	ENSGT00460000041630	ENSGT00940000157607	ENSGT00390000004674.i.b ##22	ENSGT00390000004674.j #23	ENSGT00940000157064.a.b.a	ENSGT00940000157064.a.b.b.a.a	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927.a ##27	ENSGT00390000015318.b	ENSGT01030000234590.A.b.b	ENSGT00940000165445	ENSGT01030000234590.A.b.a.a	ENSGT00940000155866	ENSGT00940000160228.i.a.b	ENSGT00390000003197	ENSGT00940000157074	ENSGT00390000001143	ENSGT00940000159265
Sheepshead minnow	MODERN SPECIES	745								ENSCVAG00000011753	PIK3CA (ENSCVAG00000000309)	ENSCVAG00000011847	ENSCVAG00000011852	ENSCVAG00000011860	ENSCVAG00000011969	stxbp3 (ENSCVAG00000011988)	ENSCVAG00000011996 ##22	ENSCVAG00000012039 #23	ENSCVAG00000012063	henmt1 (ENSCVAG00000012108)	fam102bb (ENSCVAG00000012132) ##26	slc25a24 (ENSCVAG00000012175) ##27	tmem69 (ENSCVAG00000012182)	tm4sf4 (ENSCVAG00000012196)	ENSCVAG00000012227	ENSCVAG00000012235	cp (ENSCVAG00000012247)	ENSCVAG00000012742	ncbp2 (ENSCVAG00000012766)	fkbp2 (ENSCVAG00000012797)	NCBP2AS2 (ENSCVAG00000012803)	MELTF (ENSCVAG00000012897)
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	2335				chrng (ENSFHEG00000003068) #13	eif4e2 (ENSFHEG00000003036) #15	CAPN10 (ENSFHEG00000003013) #16	ENSFHEG00000003004	ENSFHEG00000003002	ENSFHEG00000002980	ENSFHEG00000002973	ENSFHEG00000002948	ENSFHEG00000002941 #24	WDR47 (ENSFHEG00000002929) #19	ENSFHEG00000002898 #20	ENSFHEG00000002889 #22	ENSFHEG00000000082 #23	ENSFHEG00000002879 #23	ENSFHEG00000002875	prpf38b (ENSFHEG00000002861) #25	eeig2a (ENSFHEG00000002856) #26	ENSFHEG00000002845 #27	PRKAB2 (ENSFHEG00000002805)	dnai7 (ENSFHEG00000002790)	lyrm5a (ENSFHEG00000002767)	ENSFHEG00000002757 ##28	ENSFHEG00000002740 ##28	ENSFHEG00000002675	tm6sf2a (ENSFHEG00000002667) #29	ENSFHEG00000002659 #30	ENSFHEG00000002640 #30	SLC25A42 (ENSFHEG00000002629)
Mummichog	MODERN SPECIES	2395	ttc14 (ENSFHEG00000003862)	ENSFHEG00000003734	fxr1 (ENSFHEG00000003714)	dnajc19 (ENSFHEG00000003702)	sox2 (ENSFHEG00000003675)	ATP11B (ENSFHEG00000003653)	mccc1 (ENSFHEG00000003581)	ENSFHEG00000003270	ENSFHEG00000003260	PIK3CA (ENSFHEG00000003251)	ZMAT3 (ENSFHEG00000003221)	ENSFHEG00000003207	ENSFHEG00000003197	stxbp3 (ENSFHEG00000003185)	ENSFHEG00000003177 ##22	ENSFHEG00000003168 #23	ENSFHEG00000003159	ENSFHEG00000003137	henmt1 (ENSFHEG00000003127)	fam102bb (ENSFHEG00000003122) ##26	slc25a24 (ENSFHEG00000003104) ##27	tmem69 (ENSFHEG00000003075)	tm4sf4 (ENSFHEG00000003069)	ENSFHEG00000003061	ENSFHEG00000003052	cp (ENSFHEG00000003044)	ENSFHEG00000002995	ncbp2 (ENSFHEG00000002308)	fkbp2 (ENSFHEG00000002303)	NCBP2AS2 (ENSFHEG00000002289)	MELTF (ENSFHEG00000002267)
Mummichog	MODERN SPECIES	2335			chrng (ENSFHEG00000003068) #13	eif4e2 (ENSFHEG00000003036) #15	CAPN10 (ENSFHEG00000003013) #16	ENSFHEG00000003004	ENSFHEG00000003002	ENSFHEG00000002980	ENSFHEG00000002973	ENSFHEG00000002948	ENSFHEG00000002941 #24	WDR47 (ENSFHEG00000002929) #19	ENSFHEG00000002898 #20	ENSFHEG00000002889 #22	ENSFHEG00000000082 #23	ENSFHEG00000002879 #23	ENSFHEG00000002875	prpf38b (ENSFHEG00000002861) #25	eeig2a (ENSFHEG00000002856) #26	ENSFHEG00000002845 #27	PRKAB2 (ENSFHEG00000002805)	dnai7 (ENSFHEG00000002790)	lyrm5a (ENSFHEG00000002767)	ENSFHEG00000002757 ##28	ENSFHEG00000002740 ##28	ENSFHEG00000002675	tm6sf2a (ENSFHEG00000002667) #29	ENSFHEG00000002659 #30	ENSFHEG00000002640 #30	SLC25A42 (ENSFHEG00000002629)	ARMC6 (ENSFHEG00000002612) #31
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000177587	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.a.a.a.b #28	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00940000178918	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00940000178918	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.d ##28	ENSGT00940000155779.a.a.k	ENSGT00940000155779.a.a.l	ENSGT00940000158480	ENSGT00940000166999.B	ENSGT00530000063632.B.b	ENSGT00390000018500.a.d	ENSGT00930000152259	ENSGT00940000157642.g	ENSGT01060000248544.a.b.b.a	ENSGT00940000171828
Amphiprion	ANCESTRAL SPECIES	48	ENSGT00940000157183.b #12	ENSGT00940000160041 #13	ENSGT00940000166623 #14	ENSGT00940000154694 #15	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000172979 #18	ENSGT00940000163706	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00940000178918	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00940000177606	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT00940000180150	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Clown anemonefish	MODERN SPECIES	763			ENSAOCG00000012121 ##12	chrng (ENSAOCG00000012166) #13	ENSAOCG00000012197 #14	eif4e2 (ENSAOCG00000012215) #15	CAPN10 (ENSAOCG00000000749) #16	ENSAOCG00000012268 #17	ENSAOCG00000012285 #18	ENSAOCG00000012316	CAMSAP2 (ENSAOCG00000012397) #24	WDR47 (ENSAOCG00000012475) #19	ENSAOCG00000012566 #20	ENSAOCG00000012591	FNDC7 (ENSAOCG00000002076) #22	ENSAOCG00000012660 #23	prpf38b (ENSAOCG00000012675) #25	eeig2a (ENSAOCG00000012718) #26	ENSAOCG00000012764 #27	PRKAB2 (ENSAOCG00000002014)	ENSAOCG00000012811	ENSAOCG00000012840 ##28	ENSAOCG00000013067 ##28	ENSAOCG00000000824	ENSAOCG00000013117	tm6sf2a (ENSAOCG00000013225) #29
Cichlidae	ANCESTRAL SPECIES	247																ENSGT00390000004674.j #23	ENSGT00940000169454 #25
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B.a	ENSGT00940000177035.B.b.a.a	ENSGT00940000177035.B.b.b	ENSGT00940000163706	ENSGT00980000198947	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000162108.z.a	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00940000157064.a.b.b.a.b	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000159706 #16	ENSGT01020000230600 #17	ENSGT00940000177035.C	ENSGT00940000177035.B.a	ENSGT00940000177035.B.b.a.a	ENSGT00940000177035.B.b.b	ENSGT00940000163706	ENSGT00980000198947	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.m #19	ENSGT00940000154667.b.b #20	ENSGT00940000154254.b #21	ENSGT00940000162108.z.a	ENSGT00390000004674.i.a #22	ENSGT00980000198596.A	ENSGT00390000004674.j #23	ENSGT00940000169454 #25	ENSGT00730000111085.B	ENSGT00940000156132.g #26	ENSGT00940000164927.b #27	ENSGT00940000159284	ENSGT00950000183190.a.a.b.c.a ##28	ENSGT01100000263594.a	ENSGT00390000012913.a.a #29	ENSGT00940000158649.a.b.f #30	ENSGT00940000158163.b	ENSGT00390000002913 #31	ENSGT00390000012198.b.a #32	ENSGT00390000004097.a.f #33	ENSGT00390000000719 #34	ENSGT00940000165622 #35
Lyretail cichlid	MODERN SPECIES	300	chrng (ENSNBRG00000018459) #13	ENSNBRG00000018482 #14	eif4e2 (ENSNBRG00000018517) #15	ENSNBRG00000018661 #16	ENSNBRG00000018675 #17	ENSNBRG00000018693	ENSNBRG00000018724	ENSNBRG00000018787	ENSNBRG00000018795 #24	WDR47 (ENSNBRG00000018899) #19	ENSNBRG00000019030 #20	ENSNBRG00000019072	ENSNBRG00000019083	ENSNBRG00000019124	FNDC7 (ENSNBRG00000019144) #22	ENSNBRG00000019185 #23	prpf38b (ENSNBRG00000019212) #25	ENSNBRG00000019221	eeig2a (ENSNBRG00000019233) #26	ENSNBRG00000019259 #27	PRKAB2 (ENSNBRG00000019297)	ENSNBRG00000019338 ##28	ENSNBRG00000019352 ##28	ENSNBRG00000019372	tm6sf2a (ENSNBRG00000019383) #29	ENSNBRG00000019397 #30	ENSNBRG00000019423 #30	SLC25A42 (ENSNBRG00000019458)	ARMC6 (ENSNBRG00000019517) #31	MAU2 (ENSNBRG00000019564) #32	GATAD2A (ENSNBRG00000019611) #33
Nile tilapia	MODERN SPECIES	8	dnajc19 (ENSONIG00000027409)	sox2 (ENSONIG00000039405)	ENSONIG00000021316	ATP11B (ENSONIG00000003733)	ENSONIG00000028245	ENSONIG00000015024	mccc1 (ENSONIG00000008395)	ENSONIG00000037606	ENSONIG00000008390	ENSONIG00000027371	ENSONIG00000008388	PIK3CA (ENSONIG00000008379)	ENSONIG00000008378	ENSONIG00000041522	stxbp3 (ENSONIG00000008368)	ENSONIG00000036868 #23	ENSONIG00000043187	ENSONIG00000008317	henmt1 (ENSONIG00000008365)	fam102bb (ENSONIG00000008362) ##26	slc25a24 (ENSONIG00000008355) ##27	tmem69 (ENSONIG00000008354)	tm4sf4 (ENSONIG00000008352)	ENSONIG00000040500	ENSONIG00000008349	cp (ENSONIG00000008332)	ncbp2 (ENSONIG00000008314)	ENSONIG00000035504	ENSONIG00000031784	ENSONIG00000030189	ncbp2 (ENSONIG00000033721)
Osteoglossiformes	DUPLICATION
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	51	ENSGT00390000006200	ENSGT00390000001114	ENSGT00940000155117.f.a	ENSGT00940000158746	ENSGT00550000075080	ENSGT00940000155152.f.a	ENSGT00940000158821.i	ENSGT00940000156725.b	ENSGT00940000153391.c.b.b.i.a.a	ENSGT00950000182975.a.a.a.a.b #24	ENSGT00940000155561.k #19	ENSGT00940000165672	ENSGT00940000154667.b.b #20	ENSGT00940000177587	ENSGT00940000157607.m.a	ENSGT00390000004674.k.a #22	ENSGT00940000157064.a.b.a	ENSGT00730000111085.B.k	ENSGT00940000156132.g #26	ENSGT00940000159284	ENSGT00950000183190.a.a.b.a.a ##28	ENSGT00950000183190.a.a.a.b ##28	ENSGT00940000159466	ENSGT00390000014886	ENSGT00390000003574.c	ENSGT00940000154149.b.a.g.a	ENSGT00940000155635.db	ENSGT00940000154654.a.b	ENSGT01030000234606.b.e.a	ENSGT00390000010743.a.b	ENSGT00940000156236.b
P. kingsleyae	MODERN SPECIES	81	rgs2 (ENSPKIG00000018309)	uchl5 (ENSPKIG00000018255)	ro60 (ENSPKIG00000018217)	b3galt2 (ENSPKIG00000018205)	cdc73 (ENSPKIG00000018155)	ZBTB41 (ENSPKIG00000018092)	ENSPKIG00000018060	LHX9 (ENSPKIG00000018033)	nek7 (ENSPKIG00000018005)	nr5a2 (ENSPKIG00000017971)	CAMSAP2 (ENSPKIG00000017872) #24	WDR47 (ENSPKIG00000017780) #19	ENSPKIG00000017723	ENSPKIG00000017633 #20	ENSPKIG00000017591	FNDC7 (ENSPKIG00000017510) #22	ENSPKIG00000017437	stxbp3 (ENSPKIG00000017341)	ENSPKIG00000017291	EEIG2 (ENSPKIG00000017219) #26	PRKAB2 (ENSPKIG00000017163)	ENSPKIG00000017136 ##28	ENSPKIG00000017105 ##28	prrx1a (ENSPKIG00000017092)	gorab (ENSPKIG00000017073)	kifap3b (ENSPKIG00000017032)	ENSPKIG00000016968	ivns1abpb (ENSPKIG00000016869)	arpc5a (ENSPKIG00000016790)	pla2g4aa (ENSPKIG00000016752)	ptgs2a (ENSPKIG00000016720)
Asian bonytongue	MODERN SPECIES	18	b3galt2 (ENSSFOG00015031272)	KCNT2 (ENSSFOG00015011805)	ENSSFOG00015030344	ENSSFOG00015031503	ZBTB41 (ENSSFOG00015011752)	ENSSFOG00015011726	lhx9 (ENSSFOG00015003455)	nek7 (ENSSFOG00015011686)	nr5a2 (ENSSFOG00015003694)	CAMSAP2 (ENSSFOG00015011601) #24	WDR47 (ENSSFOG00015011555) #19	ENSSFOG00015011521	ENSSFOG00015011454 #20	ENSSFOG00015011433	stxbp3 (ENSSFOG00015011374)	ENSSFOG00015011293 #22	ENSSFOG00015011251	eeig2a (ENSSFOG00015011213) #26	PRKAB2 (ENSSFOG00015011191)	ENSSFOG00015011132 ##28	prrx1a (ENSSFOG00015011095)	gorab (ENSSFOG00015011069)	kifap3b (ENSSFOG00015011035)	ENSSFOG00015010963	eif4e2 (ENSSFOG00015010899) #15	CAPN10 (ENSSFOG00015010857) #16	ENSSFOG00015010836	tfr1a (ENSSFOG00015010794)	ENSSFOG00015010731	tmtopsb (ENSSFOG00015010704)	adipoqb (ENSSFOG00015010696)
Osteoglossiformes	ANCESTRAL SPECIES	5	ENSGT00940000155152.f.b	ENSGT00940000155446	ENSGT00390000016548	ENSGT00940000158821.j	ENSGT00940000156725.a	ENSGT00940000159457	ENSGT00940000153391.c.b.b.i.a.b	ENSGT00940000153391.c.b.b.i.b	ENSGT00940000161534	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.a.a ##24	ENSGT00940000155561.l #19	ENSGT00940000154667.b.a ##20	ENSGT00940000157607.n	ENSGT00390000004674.k.b #22	ENSGT00730000111085.B.l	ENSGT00390000004798	ENSGT00940000156132.h ##26	ENSGT00940000164927 #27	ENSGT00950000183190.a.a.b.a.b ##28	ENSGT00390000008371.a	ENSGT00390000003574.d	ENSGT00940000154149.b.a.g.b	ENSGT00940000154499	ENSGT00530000063646.a	ENSGT00390000001254	ENSGT00940000155635.eb	ENSGT00940000154614	ENSGT00940000164697.b	ENSGT00940000154654.a.a
P. kingsleyae	MODERN SPECIES	75								nr5a2 (ENSPKIG00000004087)	ENSPKIG00000004169	kif14 (ENSPKIG00000004304)	ddx59 (ENSPKIG00000004361)	camsap2a (ENSPKIG00000004415) ##24	WDR47 (ENSPKIG00000004492) #19	ENSPKIG00000004539 ##20	stxbp3 (ENSPKIG00000004597)	FNDC7 (ENSPKIG00000004693) #22	ENSPKIG00000004743	ENSPKIG00000004762 #22	ENSPKIG00000004783	ENSPKIG00000004794	ENSPKIG00000004815	henmt1 (ENSPKIG00000004845)	fam102bb (ENSPKIG00000004892) ##26	slc25a24 (ENSPKIG00000004963) #27	ENSPKIG00000005176 ##28	prrx1b (ENSPKIG00000005726)	ntmt2 (ENSPKIG00000005754)	KIFAP3 (ENSPKIG00000005784)	NIBAN1 (ENSPKIG00000005832)	rnf2 (ENSPKIG00000005901)	TRMT1L (ENSPKIG00000005941)
Asian bonytongue	MODERN SPECIES	24	ENSSFOG00015003285	DENND1B (ENSSFOG00015003317)	si:dkey-121a9.3 (ENSSFOG00015032561)	lhx9 (ENSSFOG00015011698)	nek7 (ENSSFOG00015024934)	PTPRC (ENSSFOG00015026618)	PTPRC (ENSSFOG00015003517)	nr5a2 (ENSSFOG00015011650)	ENSSFOG00015032583	kif14 (ENSSFOG00015003775)	ddx59 (ENSSFOG00015003999)	camsap2a (ENSSFOG00015004040) ##24	WDR47 (ENSSFOG00015004135) #19	ENSSFOG00015004201 ##20	ENSSFOG00015004252	FNDC7 (ENSSFOG00015004287) #22	ENSSFOG00015004405	henmt1 (ENSSFOG00015032683)	fam102bb (ENSSFOG00015004479) ##26	slc25a24 (ENSSFOG00015004547) #27	ENSSFOG00015004636 ##28	ENSSFOG00015028306 ##28	prrx1b (ENSSFOG00015032140)	ntmt2 (ENSSFOG00015032658)	KIFAP3 (ENSSFOG00015004760)	niban1a (ENSSFOG00015004827)	rnf2 (ENSSFOG00015004836)	TRMT1L (ENSSFOG00015004878)	ENSSFOG00015004895	IVNS1ABP (ENSSFOG00015004910)	HMCN1 (ENSSFOG00015004942)
Osteoglossiformes	ANCESTRAL SPECIES	743																ENSGT00390000004674.l #22	ENSGT00940000157064.a.b.b
P. kingsleyae	MODERN SPECIES	75						nr5a2 (ENSPKIG00000004087)	ENSPKIG00000004169	kif14 (ENSPKIG00000004304)	ddx59 (ENSPKIG00000004361)	camsap2a (ENSPKIG00000004415) ##24	WDR47 (ENSPKIG00000004492) #19	ENSPKIG00000004539 ##20	stxbp3 (ENSPKIG00000004597)	FNDC7 (ENSPKIG00000004693) #22	ENSPKIG00000004743	ENSPKIG00000004762 #22	ENSPKIG00000004783	ENSPKIG00000004794	ENSPKIG00000004815	henmt1 (ENSPKIG00000004845)	fam102bb (ENSPKIG00000004892) ##26	slc25a24 (ENSPKIG00000004963) #27	ENSPKIG00000005176 ##28	prrx1b (ENSPKIG00000005726)	ntmt2 (ENSPKIG00000005754)	KIFAP3 (ENSPKIG00000005784)	NIBAN1 (ENSPKIG00000005832)	rnf2 (ENSPKIG00000005901)	TRMT1L (ENSPKIG00000005941)	ENSPKIG00000005979	IVNS1ABP (ENSPKIG00000006021)