Murinae	ANCESTRAL SPECIES	11	ENSGT00940000162504	ENSGT00940000156376 #7	ENSGT00940000162770 #8	ENSGT00940000161120 #9	ENSGT00390000001374 #10	ENSGT00720000108846.a #11	ENSGT00390000018676 #12	ENSGT01030000234625.B.c #13	ENSGT00390000012703.a #14	ENSGT00940000157391 #15	ENSGT00940000155656 #16	ENSGT00940000154790.a.a.b #17	ENSGT00940000157082 #19	ENSGT00940000156874 #20	ENSGT00730000111187.b #21	ENSGT00940000156560 #22	ENSGT00940000153881.a #23	ENSGT00940000158456	ENSGT00940000153433.B.a.b #25	ENSGT00410000025698.a #26	ENSGT00390000011270 #27	ENSGT00390000001960 #29	ENSGT00940000157390 #30	ENSGT00940000159171 #31	ENSGT00940000159967 #32	ENSGT00900000143215	ENSGT00550000074815 #33	ENSGT00940000157359 #34	ENSGT00550000074910 #35	ENSGT00390000005794 #36	ENSGT00940000157560.e #37
Mus	ANCESTRAL SPECIES	5	ENSGT00940000162504	ENSGT00940000156376 #7	ENSGT00940000162770 #8	ENSGT00940000161120 #9	ENSGT00390000001374 #10	ENSGT00720000108846.a #11	ENSGT00390000018676 #12	ENSGT01030000234625.B.c #13	ENSGT00390000012703.a #14	ENSGT00940000157391 #15	ENSGT00940000155656 #16	ENSGT00940000154790.a.a.b #17	ENSGT00940000157082 #19	ENSGT00940000156874 #20	ENSGT00730000111187.b #21	ENSGT00940000156560 #22	ENSGT00940000153881.a #23	ENSGT00940000158456	ENSGT00940000153433.B.a.b #25	ENSGT00410000025698.a #26	ENSGT00390000011270 #27	ENSGT00390000001960 #29	ENSGT00940000157390 #30	ENSGT00940000159171 #31	ENSGT00940000159967 #32	ENSGT00900000143215	ENSGT00550000074815 #33	ENSGT00940000157359 #34	ENSGT00550000074910 #35	ENSGT00390000005794 #36	ENSGT00940000157560.e #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000162504	ENSGT00940000156376 #7	ENSGT00940000162770 #8	ENSGT00940000161120 #9	ENSGT00390000001374 #10	ENSGT00720000108846.a #11	ENSGT00390000018676 #12	ENSGT01030000234625.B.c #13	ENSGT00390000012703.a #14	ENSGT00940000157391 #15	ENSGT00940000155656 #16	ENSGT00940000154790.a.a.b #17	ENSGT00940000157082 #19	ENSGT00940000156874 #20	ENSGT00730000111187.b #21	ENSGT00940000156560 #22	ENSGT00940000153881.a #23	ENSGT00940000158456	ENSGT00940000153433.B.a.b #25	ENSGT00410000025698.a #26	ENSGT00390000011270 #27	ENSGT00390000001960 #29	ENSGT00940000157390 #30	ENSGT00940000159171 #31	ENSGT00940000159967 #32	ENSGT00900000143215	ENSGT00550000074815 #33	ENSGT00940000157359 #34	ENSGT00550000074910 #35	ENSGT00390000005794 #36	ENSGT00940000157560.e #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000162504	ENSGT00940000156376 #7	ENSGT00940000162770 #8	ENSGT00940000161120 #9	ENSGT00390000001374 #10	ENSGT00720000108846.a #11	ENSGT00390000018676 #12	ENSGT01030000234625.B.c #13	ENSGT00390000012703.a #14	ENSGT00940000157391 #15	ENSGT00940000155656 #16	ENSGT00940000154790.a.a.b #17	ENSGT00940000157082 #19	ENSGT00940000156874 #20	ENSGT00730000111187.b #21	ENSGT00940000156560 #22	ENSGT00940000153881.a #23	ENSGT00940000158456	ENSGT00940000153433.B.a.b #25	ENSGT00410000025698.a #26	ENSGT00390000011270 #27	ENSGT00390000001960 #29	ENSGT00940000157390 #30	ENSGT00940000159171 #31	ENSGT00940000159967 #32	ENSGT00900000143215	ENSGT00550000074815 #33	ENSGT00940000157359 #34	ENSGT00550000074910 #35	ENSGT00390000005794 #36	ENSGT00940000157560.e #37
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000162504	ENSGT00940000156376 #7	ENSGT00940000162770 #8	ENSGT00940000161120 #9	ENSGT00390000001374 #10	ENSGT00720000108846.a #11	ENSGT00390000018676 #12	ENSGT01030000234625.B.c #13	ENSGT00390000012703.a #14	ENSGT00940000157391 #15	ENSGT00940000155656 #16	ENSGT00940000154790.a.a.b #17	ENSGT00940000157082 #19	ENSGT00940000156874 #20	ENSGT00730000111187.b #21	ENSGT00940000156560 #22	ENSGT00940000153881.a #23	ENSGT00940000158456	ENSGT00940000153433.B.a.b #25	ENSGT00410000025698.a #26	ENSGT00390000011270 #27	ENSGT00940000154443.b.a #28	ENSGT00390000001960 #29	ENSGT00940000157390 #30	ENSGT00940000159171 #31	ENSGT00940000159967 #32	ENSGT00900000143215	ENSGT00550000074815 #33	ENSGT00940000157359 #34	ENSGT00550000074910 #35	ENSGT00390000005794 #36
spretus	MODERN SPECIES		Atf3 (MGP_SPRETEiJ_G0015848) #7	Garin4 (MGP_SPRETEiJ_G0015847) #8	Batf3 (MGP_SPRETEiJ_G0015846) #9	Nsl1 (MGP_SPRETEiJ_G0015845) #10	Tatdn3 (MGP_SPRETEiJ_G0015844) #11	Spata45 (MGP_SPRETEiJ_G0015843) #12	Flvcr1 (MGP_SPRETEiJ_G0015842) #13	Vash2 (MGP_SPRETEiJ_G0015841) #14	Angel2 (MGP_SPRETEiJ_G0015840) #15	Rps6kc1 (MGP_SPRETEiJ_G0015839) #16	Prox1 (MGP_SPRETEiJ_G0015838) #17	Ighv2-7 (MGP_SPRETEiJ_G0000034) #18	Smyd2 (MGP_SPRETEiJ_G0015837) #19	Ptpn14 (MGP_SPRETEiJ_G0015836) #20	Cenpf (MGP_SPRETEiJ_G0015835) #21	Kcnk2 (MGP_SPRETEiJ_G0015834) #22	Kctd3 (MGP_SPRETEiJ_G0015833) #23	MGP_SPRETEiJ_G0015832 #24	Esrrg (MGP_SPRETEiJ_G0015831) #25	Gpatch2 (MGP_SPRETEiJ_G0015830) #26	Spata17 (MGP_SPRETEiJ_G0015829) #27	D1Pas1 (MGP_SPRETEiJ_G0015828) #28	Rrp15 (MGP_SPRETEiJ_G0015827) #29	Tgfb2 (MGP_SPRETEiJ_G0015826) #30	Lyplal1 (MGP_SPRETEiJ_G0015825) #31	Slc30a10 (MGP_SPRETEiJ_G0015824) #32	Eprs (MGP_SPRETEiJ_G0015823) #33	Bpnt1 (MGP_SPRETEiJ_G0015822) #34	Iars2 (MGP_SPRETEiJ_G0015821) #35	Rab3gap2 (MGP_SPRETEiJ_G0015820) #36	Mark1 (MGP_SPRETEiJ_G0015819) #37
Steppe mouse	MODERN SPECIES	3418	ENSMSIG00000029314	ENSMSIG00000029315	Atf3 (ENSMSIG00000029326) #7	Garin4 (ENSMSIG00000029331) #8	ENSMSIG00000029332 #10	ENSMSIG00000029353 #11	Spata45 (ENSMSIG00000029382) #12	Flvcr1 (ENSMSIG00000029386) #13	Vash2 (ENSMSIG00000029392) #14	Angel2 (ENSMSIG00000029399) #15	Rps6kc1 (ENSMSIG00000029410) #16	Prox1 (ENSMSIG00000029428) #17	Smyd2 (ENSMSIG00000029433) #19	Ptpn14 (ENSMSIG00000029436) #20	Cenpf (ENSMSIG00000029453) #21	Kcnk2 (ENSMSIG00000029469) #22	Kctd3 (ENSMSIG00000029533) #23	Ush2a (ENSMSIG00000029542)	Esrrg (ENSMSIG00000029593) #25	ENSMSIG00000029619	Gpatch2 (ENSMSIG00000029622) #26	Spata17 (ENSMSIG00000029638) #27
Mouse	MODERN SPECIES		Nenf (ENSMUSG00000037499)	Atf3 (ENSMUSG00000026628) #7	Garin4 (ENSMUSG00000091017) #8	Batf3 (ENSMUSG00000026630) #9	Nsl1 (ENSMUSG00000062510) #10	Tatdn3 (ENSMUSG00000026632) #11	Spata45 (ENSMUSG00000057072) #12	Flvcr1 (ENSMUSG00000066595) #13	Vash2 (ENSMUSG00000037568) #14	Angel2 (ENSMUSG00000026634) #15	Rps6kc1 (ENSMUSG00000089872) #16	Prox1 (ENSMUSG00000010175) #17	Smyd2 (ENSMUSG00000026603) #19	Ptpn14 (ENSMUSG00000026604) #20	Cenpf (ENSMUSG00000026605) #21	Kcnk2 (ENSMUSG00000037624) #22	Kctd3 (ENSMUSG00000026608) #23	Ush2a (ENSMUSG00000026609)	Esrrg (ENSMUSG00000026610) #25	Gpatch2 (ENSMUSG00000039210) #26	Spata17 (ENSMUSG00000026611) #27	D1Pas1 (ENSMUSG00000039224) #28	Rrp15 (ENSMUSG00000001305) #29	Tgfb2 (ENSMUSG00000039239) #30	Lyplal1 (ENSMUSG00000039246) #31	Slc30a10 (ENSMUSG00000026614) #32	Eprs (ENSMUSG00000026615) #33	Bpnt1 (ENSMUSG00000026617) #34	Iars2 (ENSMUSG00000026618) #35	Rab3gap2 (ENSMUSG00000039318) #36	Mark1 (ENSMUSG00000026620) #37
Ryukyu mouse	MODERN SPECIES		Nenf (MGP_CAROLIEiJ_G0015049)	Atf3 (MGP_CAROLIEiJ_G0015048) #7	Garin4 (MGP_CAROLIEiJ_G0015047) #8	Batf3 (MGP_CAROLIEiJ_G0015046) #9	Nsl1 (MGP_CAROLIEiJ_G0015045) #10	Tatdn3 (MGP_CAROLIEiJ_G0015044) #11	Spata45 (MGP_CAROLIEiJ_G0015043) #12	Flvcr1 (MGP_CAROLIEiJ_G0015042) #13	Vash2 (MGP_CAROLIEiJ_G0015041) #14	Angel2 (MGP_CAROLIEiJ_G0015040) #15	Rps6kc1 (MGP_CAROLIEiJ_G0015039) #16	Prox1 (MGP_CAROLIEiJ_G0015038) #17	Smyd2 (MGP_CAROLIEiJ_G0015037) #19	Ptpn14 (MGP_CAROLIEiJ_G0015036) #20	Cenpf (MGP_CAROLIEiJ_G0015035) #21	Kcnk2 (MGP_CAROLIEiJ_G0015034) #22	Kctd3 (MGP_CAROLIEiJ_G0015033) #23	MGP_CAROLIEiJ_G0015032 #24	Esrrg (MGP_CAROLIEiJ_G0015031) #25	Gpatch2 (MGP_CAROLIEiJ_G0015030) #26	Spata17 (MGP_CAROLIEiJ_G0015029) #27	D1Pas1 (MGP_CAROLIEiJ_G0015028) #28	Rrp15 (MGP_CAROLIEiJ_G0015027) #29	Tgfb2 (MGP_CAROLIEiJ_G0015026) #30	Lyplal1 (MGP_CAROLIEiJ_G0015025) #31	Slc30a10 (MGP_CAROLIEiJ_G0015024) #32	Eprs (MGP_CAROLIEiJ_G0015023) #33	Bpnt1 (MGP_CAROLIEiJ_G0015022) #34	Iars2 (MGP_CAROLIEiJ_G0015021) #35	Rab3gap2 (MGP_CAROLIEiJ_G0015020) #36	Mark1 (MGP_CAROLIEiJ_G0015019) #37
Shrew mouse	MODERN SPECIES	18	Nenf (MGP_PahariEiJ_G0028281)	Atf3 (MGP_PahariEiJ_G0028280) #7	Garin4 (MGP_PahariEiJ_G0028279) #8	Batf3 (MGP_PahariEiJ_G0028278) #9	Nsl1 (MGP_PahariEiJ_G0028277) #10	MGP_PahariEiJ_G0028276 #11	Spata45 (MGP_PahariEiJ_G0028275) #12	Flvcr1 (MGP_PahariEiJ_G0028274) #13	Vash2 (MGP_PahariEiJ_G0028273) #14	Angel2 (MGP_PahariEiJ_G0028272) #15	Rps6kc1 (MGP_PahariEiJ_G0028271) #16	Prox1 (MGP_PahariEiJ_G0028270) #17	MGP_PahariEiJ_G0028269 #19	MGP_PahariEiJ_G0028268 #20	Cenpf (MGP_PahariEiJ_G0028267) #21	Kcnk2 (MGP_PahariEiJ_G0028266) #22	Kctd3 (MGP_PahariEiJ_G0028265) #23	Ush2a (MGP_PahariEiJ_G0028264)	Esrrg (MGP_PahariEiJ_G0028263) #25	Gpatch2 (MGP_PahariEiJ_G0028262) #26	Spata17 (MGP_PahariEiJ_G0028261) #27	D1Pas1 (MGP_PahariEiJ_G0028260) #28	Rrp15 (MGP_PahariEiJ_G0028259) #29	Tgfb2 (MGP_PahariEiJ_G0028258) #30	Lyplal1 (MGP_PahariEiJ_G0028257) #31	Slc30a10 (MGP_PahariEiJ_G0028256) #32	Eprs (MGP_PahariEiJ_G0028255) #33	Bpnt1 (MGP_PahariEiJ_G0028254) #34	Iars2 (MGP_PahariEiJ_G0028253) #35	Rab3gap2 (MGP_PahariEiJ_G0028252) #36	Mark1 (MGP_PahariEiJ_G0028251) #37
Rat	MODERN SPECIES	4	Garin4 (ENSRNOG00000029371) #8	Batf3 (ENSRNOG00000003716) #9	Nsl1 (ENSRNOG00000042286) #10	Tatdn3 (ENSRNOG00000046460) #11	SPATA45 (ENSRNOG00000048659) #12	Flvcr1 (ENSRNOG00000049633) #13	Vash2 (ENSRNOG00000003832) #14	Angel2 (ENSRNOG00000003795) #15	LOC678708 (ENSRNOG00000071166)	Rps6kc1 (ENSRNOG00000003767) #16	Prox1 (ENSRNOG00000003694) #17	LOC498308 (ENSRNOG00000032812)	Smyd2 (ENSRNOG00000003583) #19	Ptpn14 (ENSRNOG00000003407) #20	Cenpf (ENSRNOG00000003388) #21	Kcnk2 (ENSRNOG00000002653) #22	LOC100361993 (ENSRNOG00000022144)	Kctd3 (ENSRNOG00000002627) #23	Ush2a (ENSRNOG00000003738)	Esrrg (ENSRNOG00000002593) #25	Gpatch2 (ENSRNOG00000002512) #26	Spata17 (ENSRNOG00000002504) #27	Ddx3y (ENSRNOG00000002501) #28	Rrp15 (ENSRNOG00000002450) #29	Tgfb2 (ENSRNOG00000002418) #30	Lyplal1 (ENSRNOG00000023130) #31	Slc30a10 (ENSRNOG00000002397) #32	Eprs1 (ENSRNOG00000002393) #33	Bpnt1 (ENSRNOG00000002378) #34	Iars2 (ENSRNOG00000002368) #35	Rab3gap2 (ENSRNOG00000002353) #36