Sarcopterygii ANCESTRAL SPECIES ENSGT00940000155734 #22 Tetrapoda ANCESTRAL SPECIES 4 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Amniota ANCESTRAL SPECIES 1 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Mammalia ANCESTRAL SPECIES 38 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Theria ANCESTRAL SPECIES 35 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Eutheria ANCESTRAL SPECIES 2 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Boreoeutheria ANCESTRAL SPECIES 15 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Euarchontoglires ANCESTRAL SPECIES 15 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Primates ANCESTRAL SPECIES 14 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Haplorrhini ANCESTRAL SPECIES 15 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Simiiformes ANCESTRAL SPECIES 14 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Catarrhini ANCESTRAL SPECIES 17 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00910000148193 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Cercopithecidae ANCESTRAL SPECIES 18 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00910000148193 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00910000147526 #28 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 Rhinopithecus ANCESTRAL SPECIES 174 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00910000147526 #28 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Black snub-nosed monkey MODERN SPECIES 147 TRIB2 (ENSRBIG00000014477) #18 LPIN1 (ENSRBIG00000000079) #19 NTSR2 (ENSRBIG00000029349) #20 GREB1 (ENSRBIG00000042507) #21 E2F6 (ENSRBIG00000039075) #22 ROCK2 (ENSRBIG00000044675) #23 SLC66A3 (ENSRBIG00000030849) #24 C2orf50 (ENSRBIG00000034453) #25 KCNF1 (ENSRBIG00000044334) #26 PDIA6 (ENSRBIG00000031454) #27 ENSRBIG00000035043 #28 ATP6V1C2 (ENSRBIG00000031961) #29 NOL10 (ENSRBIG00000043507) #30 ENSRBIG00000000544 #31 HPCAL1 (ENSRBIG00000034017) #32 RRM2 (ENSRBIG00000033258) #33 KLF11 (ENSRBIG00000037952) #34 GRHL1 (ENSRBIG00000024539) #35 TAF1B (ENSRBIG00000028101) #36 YWHAQ (ENSRBIG00000023381) #37 Golden snub-nosed monkey MODERN SPECIES 2175 NTSR2 (ENSRROG00000027868) #20 GREB1 (ENSRROG00000032452) #21 E2F6 (ENSRROG00000038559) #22 ROCK2 (ENSRROG00000034982) #23 SLC66A3 (ENSRROG00000037932) #24 C2orf50 (ENSRROG00000036464) #25 ENSRROG00000039195 KCNF1 (ENSRROG00000034842) #26 PDIA6 (ENSRROG00000040359) #27 ATP6V1C2 (ENSRROG00000039206) #29 ENSRROG00000029320 #28 NOL10 (ENSRROG00000043208) #30 ENSRROG00000045795 #31 HPCAL1 (ENSRROG00000033182) #32 RRM2 (ENSRROG00000041328) #33 KLF11 (ENSRROG00000041608) #34 GRHL1 (ENSRROG00000028348) #35 TAF1B (ENSRROG00000024712) #36 Cercopithecinae ANCESTRAL SPECIES 17 ENSGT00940000156513 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00910000148193 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00910000147526 #28 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Cercopithecinae_a ANCESTRAL SPECIES 17 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00910000148107 ENSGT00950000182986.a.b.a #18 ENSGT00910000148193 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00910000147526 #28 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.x ##33 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 Macaca ANCESTRAL SPECIES 17 ENSGT00940000156513 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00950000183424 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00910000148107 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00910000147526 #28 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 Pig-tailed macaque MODERN SPECIES 127 ENSMNEG00000033454 CYRIA (ENSMNEG00000035773) MYCN (ENSMNEG00000034331) ENSMNEG00000005879 ENSMNEG00000005027 ENSMNEG00000020096 DDX1 (ENSMNEG00000029189) NBAS (ENSMNEG00000045342) ENSMNEG00000039198 LRATD1 (ENSMNEG00000027054) ENSMNEG00000013637 TRIB2 (ENSMNEG00000033803) #18 LPIN1 (ENSMNEG00000029714) #19 NTSR2 (ENSMNEG00000030048) #20 GREB1 (ENSMNEG00000031259) #21 E2F6 (ENSMNEG00000032994) #22 ROCK2 (ENSMNEG00000044195) #23 SLC66A3 (ENSMNEG00000044841) #24 C2orf50 (ENSMNEG00000037338) #25 KCNF1 (ENSMNEG00000039841) #26 PDIA6 (ENSMNEG00000030894) #27 ATP6V1C2 (ENSMNEG00000037515) #29 ENSMNEG00000038801 #28 NOL10 (ENSMNEG00000039685) #30 ODC1 (ENSMNEG00000043400) #31 HPCAL1 (ENSMNEG00000033423) #32 RRM2 (ENSMNEG00000028272) #33 CYS1 (ENSMNEG00000030186) ENSMNEG00000018854 KLF11 (ENSMNEG00000034723) #34 GRHL1 (ENSMNEG00000030598) #35 Macaca_a ANCESTRAL SPECIES 15 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000153294.m.a.d.e ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Crab-eating macaque MODERN SPECIES 4 VSNL1 (ENSMFAG00000063922) RAD51AP2 (ENSMFAG00000002803) CYRIA (ENSMFAG00000030486) MYCN (ENSMFAG00000032784) ENSMFAG00000052602 DDX1 (ENSMFAG00000033987) NBAS (ENSMFAG00000003823) LRATD1 (ENSMFAG00000027588) ENSMFAG00000047890 TRIB2 (ENSMFAG00000042686) #18 LPIN1 (ENSMFAG00000035872) #19 ENSMFAG00000064291 NTSR2 (ENSMFAG00000043071) #20 ENSMFAG00000044386 #21 ENSMFAG00000050503 #21 E2F6 (ENSMFAG00000044687) #22 ROCK2 (ENSMFAG00000043366) #23 SLC66A3 (ENSMFAG00000034193) #24 C2orf50 (ENSMFAG00000032471) #25 KCNF1 (ENSMFAG00000041973) #26 PDIA6 (ENSMFAG00000037618) #27 ATP6V1C2 (ENSMFAG00000032936) #29 NOL10 (ENSMFAG00000041289) #30 ENSMFAG00000038147 #31 HPCAL1 (ENSMFAG00000044146) #32 RRM2 (ENSMFAG00000040783) #33 ENSMFAG00000052007 KLF11 (ENSMFAG00000039490) #34 GRHL1 (ENSMFAG00000032356) #35 TAF1B (ENSMFAG00000041401) #36 ENSMFAG00000004741 ##37 Rhesus MODERN SPECIES 4 VSNL1 (ENSMMUG00000040529) RAD51AP2 (ENSMMUG00000058011) CYRIA (ENSMMUG00000020385) MYCN (ENSMMUG00000052363) ENSMMUG00000052644 DDX1 (ENSMMUG00000023437) NBAS (ENSMMUG00000023434) LRATD1 (ENSMMUG00000004215) ENSMMUG00000059746 ENSMMUG00000060624 TRIB2 (ENSMMUG00000038615) #18 ENSMMUG00000062508 LPIN1 (ENSMMUG00000021672) #19 NTSR2 (ENSMMUG00000020250) #20 GREB1 (ENSMMUG00000020249) #21 E2F6 (ENSMMUG00000023225) #22 ROCK2 (ENSMMUG00000016678) #23 SLC66A3 (ENSMMUG00000022785) #24 C13H2orf50 (ENSMMUG00000064867) #25 ENSMMUG00000059454 PDIA6 (ENSMMUG00000012864) #27 ATP6V1C2 (ENSMMUG00000010320) #29 NOL10 (ENSMMUG00000010671) #30 ODC1 (ENSMMUG00000020441) #31 HPCAL1 (ENSMMUG00000020440) #32 ENSMMUG00000053871 RRM2 (ENSMMUG00000002057) #33 CYS1 (ENSMMUG00000030941) KLF11 (ENSMMUG00000002054) #34 GRHL1 (ENSMMUG00000001535) #35 TAF1B (ENSMMUG00000001530) #36 Cercopithecinae_b ANCESTRAL SPECIES 15 ENSGT00940000156513 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00910000148107 ENSGT00950000182986.a.b.a #18 ENSGT00910000148193 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00910000147526 #28 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.x ##33 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 Olive baboon MODERN SPECIES 5 RAD51AP2 (ENSPANG00000022532) ENSPANG00000050326 CYRIA (ENSPANG00000008636) ENSPANG00000029967 ENSPANG00000032256 DDX1 (ENSPANG00000025185) NBAS (ENSPANG00000018551) LRATD1 (ENSPANG00000018765) ENSPANG00000044900 ENSPANG00000050237 ENSPANG00000047167 TRIB2 (ENSPANG00000005636) #18 LPIN1 (ENSPANG00000009989) #19 NTSR2 (ENSPANG00000017335) #20 GREB1 (ENSPANG00000015589) #21 E2F6 (ENSPANG00000015289) #22 ENSPANG00000041240 ROCK2 (ENSPANG00000016385) #23 SLC66A3 (ENSPANG00000024078) #24 C2orf50 (ENSPANG00000005249) #25 KCNF1 (ENSPANG00000015920) #26 PDIA6 (ENSPANG00000006258) #27 ATP6V1C2 (ENSPANG00000017189) #29 NOL10 (ENSPANG00000006259) #30 ENSPANG00000011223 #31 HPCAL1 (ENSPANG00000042769) #32 ENSPANG00000044848 RRM2 (ENSPANG00000018767) #33 CYS1 (ENSPANG00000005251) ENSPANG00000031829 GRHL1 (ENSPANG00000020814) #35 Cercopithecinae_d ANCESTRAL SPECIES 23 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00950000185147 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00910000148107 ENSGT00950000182986.a.b.a #18 ENSGT00910000148193 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00910000147526 #28 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.bb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.x ##33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Drill MODERN SPECIES 1452 TRIB2 (ENSMLEG00000036327) #18 ENSMLEG00000014001 LPIN1 (ENSMLEG00000036857) #19 NTSR2 (ENSMLEG00000027903) #20 GREB1 (ENSMLEG00000042035) #21 E2F6 (ENSMLEG00000031126) #22 ROCK2 (ENSMLEG00000029001) #23 SLC66A3 (ENSMLEG00000003286) #24 C2orf50 (ENSMLEG00000038536) #25 PDIA6 (ENSMLEG00000033930) #27 ATP6V1C2 (ENSMLEG00000028199) #29 ENSMLEG00000033772 #28 NOL10 (ENSMLEG00000011854) #30 ODC1 (ENSMLEG00000039068) #31 HPCAL1 (ENSMLEG00000039247) #32 ENSMLEG00000035635 ##33 ENSMLEG00000042927 KLF11 (ENSMLEG00000036570) #34 GRHL1 (ENSMLEG00000036453) #35 TAF1B (ENSMLEG00000043999) #36 YWHAQ (ENSMLEG00000030005) #37 Sooty mangabey MODERN SPECIES 542 RAD51AP2 (ENSCATG00000035523) ENSCATG00000043417 CYRIA (ENSCATG00000004720) ENSCATG00000003592 MYCN (ENSCATG00000041172) ENSCATG00000019609 ENSCATG00000014658 DDX1 (ENSCATG00000033924) NBAS (ENSCATG00000042904) LRATD1 (ENSCATG00000021787) ENSCATG00000020884 TRIB2 (ENSCATG00000017155) #18 LPIN1 (ENSCATG00000039834) #19 NTSR2 (ENSCATG00000042424) #20 GREB1 (ENSCATG00000041583) #21 E2F6 (ENSCATG00000018212) #22 ROCK2 (ENSCATG00000043380) #23 SLC66A3 (ENSCATG00000005712) #24 C2orf50 (ENSCATG00000029297) #25 KCNF1 (ENSCATG00000016717) #26 PDIA6 (ENSCATG00000036674) #27 ATP6V1C2 (ENSCATG00000033228) #29 NOL10 (ENSCATG00000043643) #30 ODC1 (ENSCATG00000032048) #31 HPCAL1 (ENSCATG00000041723) #32 Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 5 GEN1 (ENSCSAG00000007952) SMC6 (ENSCSAG00000007925) VSNL1 (ENSCSAG00000007914) RAD51AP2 (ENSCSAG00000007907) CYRIA (ENSCSAG00000007902) MYCN (ENSCSAG00000007889) DDX1 (ENSCSAG00000007883) NBAS (ENSCSAG00000007763) ENSCSAG00000000376 LRATD1 (ENSCSAG00000000375) TRIB2 (ENSCSAG00000007539) #18 LPIN1 (ENSCSAG00000007534) #19 NTSR2 (ENSCSAG00000007519) #20 ENSCSAG00000007503 #21 ENSCSAG00000007494 #21 E2F6 (ENSCSAG00000007487) #22 ROCK2 (ENSCSAG00000007439) #23 SLC66A3 (ENSCSAG00000007311) #24 C2orf50 (ENSCSAG00000007293) #25 KCNF1 (ENSCSAG00000000374) #26 PDIA6 (ENSCSAG00000007282) #27 ATP6V1C2 (ENSCSAG00000007259) #29 NOL10 (ENSCSAG00000007229) #30 ENSCSAG00000007220 ##31 HPCAL1 (ENSCSAG00000007213) #32 RRM2 (ENSCSAG00000007201) #33 ENSCSAG00000007172 CYS1 (ENSCSAG00000007167) KLF11 (ENSCSAG00000007163) #34 GRHL1 (ENSCSAG00000007158) #35 TAF1B (ENSCSAG00000007150) #36 Vervet Monkey MODERN SPECIES 203 ATP11C (ENSCSAG00000007354) MCF2 (ENSCSAG00000007411) F9 (ENSCSAG00000007436) ENSCSAG00000007441 ZIC3 (ENSCSAG00000007453) ENSCSAG00000007461 GPR101 (ENSCSAG00000000292) ARHGEF6 (ENSCSAG00000007469) CD40LG (ENSCSAG00000007485) VGLL1 (ENSCSAG00000007498) HTATSF1 (ENSCSAG00000007505) BRS3 (ENSCSAG00000007512) ADGRG4 (ENSCSAG00000007537) MAP7D3 (ENSCSAG00000007557) FHL1 (ENSCSAG00000007563) ENSCSAG00000000293 #22 SLC9A6 (ENSCSAG00000007621) ENSCSAG00000007631 ENSCSAG00000007640 SAGE1 (ENSCSAG00000007665) ENSCSAG00000007682 INTS6L (ENSCSAG00000007686) ZNF449 (ENSCSAG00000007689) ZNF75D (ENSCSAG00000007702) ENSCSAG00000007710 ENSCSAG00000007720 ENSCSAG00000000294 RTL8C (ENSCSAG00000000295) ENSCSAG00000007729 SMIM10 (ENSCSAG00000000296) MOSPD1 (ENSCSAG00000007738) Hominoidea ANCESTRAL SPECIES 18 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424.a ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00910000148193 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a.b ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 Hominidae ANCESTRAL SPECIES 19 ENSGT00940000156513 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00950000183424.a ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a.b ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 Homo/Pan/Gorilla group ANCESTRAL SPECIES 18 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00950000183424.a ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00910000146844.b ENSGT00390000001347.vb.a.b.b.a.a ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a.b ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Gorilla MODERN SPECIES 14 ENSGGOG00000038621 FAM49A (ENSGGOG00000001230) MYCN (ENSGGOG00000005130) ENSGGOG00000041173 ENSGGOG00000043697 DDX1 (ENSGGOG00000012482) NBAS (ENSGGOG00000009226) ENSGGOG00000040876 LRATD1 (ENSGGOG00000039574) TRIB2 (ENSGGOG00000036149) #18 ENSGGOG00000043716 ENSGGOG00000043612 LPIN1 (ENSGGOG00000005901) #19 NTSR2 (ENSGGOG00000023490) #20 GREB1 (ENSGGOG00000000115) #21 E2F6 (ENSGGOG00000028171) #22 ENSGGOG00000004964 #23 SLC66A3 (ENSGGOG00000001548) #24 C2orf50 (ENSGGOG00000043829) #25 ENSGGOG00000039303 KCNF1 (ENSGGOG00000009528) #26 PDIA6 (ENSGGOG00000002278) #27 ATP6V1C2 (ENSGGOG00000002273) #29 NOL10 (ENSGGOG00000034826) #30 ODC1 (ENSGGOG00000007991) #31 HPCAL1 (ENSGGOG00000007141) #32 RRM2 (ENSGGOG00000040108) #33 ENSGGOG00000027524 KLF11 (ENSGGOG00000012494) #34 GRHL1 (ENSGGOG00000002692) #35 TAF1B (ENSGGOG00000002685) #36 Homo/Pan group ANCESTRAL SPECIES 14 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00910000146844.b ENSGT00390000001347.vb.a.b.b.a.a ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Pan ANCESTRAL SPECIES 17 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00910000146844.b ENSGT00390000001347.vb.a.b.b.a.a ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.w.a #33 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Bonobo MODERN SPECIES 14 VSNL1 (ENSPPAG00000032929) RAD51AP2 (ENSPPAG00000041865) ENSPPAG00000027462 CYRIA (ENSPPAG00000041134) ENSPPAG00000037839 DDX1 (ENSPPAG00000027432) NBAS (ENSPPAG00000031915) ENSPPAG00000015747 LRATD1 (ENSPPAG00000000774) TRIB2 (ENSPPAG00000032342) #18 ENSPPAG00000028638 ENSPPAG00000012981 LPIN1 (ENSPPAG00000032292) #19 ENSPPAG00000037510 #20 GREB1 (ENSPPAG00000030021) #21 E2F6 (ENSPPAG00000036538) #22 ENSPPAG00000036122 ROCK2 (ENSPPAG00000038618) #23 SLC66A3 (ENSPPAG00000026752) #24 C2orf50 (ENSPPAG00000042216) #25 KCNF1 (ENSPPAG00000042656) #26 PDIA6 (ENSPPAG00000028754) #27 ATP6V1C2 (ENSPPAG00000028894) #29 NOL10 (ENSPPAG00000010631) #30 ODC1 (ENSPPAG00000004476) #31 HPCAL1 (ENSPPAG00000032513) #32 RRM2 (ENSPPAG00000040070) #33 ENSPPAG00000010181 KLF11 (ENSPPAG00000030099) #34 GRHL1 (ENSPPAG00000030977) #35 TAF1B (ENSPPAG00000031684) #36 Chimpanzee MODERN SPECIES 14 ENSPTRG00000006456 CYRIA (ENSPTRG00000011673) ENSPTRG00000046661 MYCN (ENSPTRG00000011672) MYCNOS (ENSPTRG00000042767) DDX1 (ENSPTRG00000011670) NBAS (ENSPTRG00000011668) ENSPTRG00000052334 LRATD1 (ENSPTRG00000046886) TRIB2 (ENSPTRG00000011666) #18 ENSPTRG00000047057 ENSPTRG00000051961 LPIN1 (ENSPTRG00000011665) #19 NTSR2 (ENSPTRG00000011664) #20 GREB1 (ENSPTRG00000022786) #21 E2F6 (ENSPTRG00000011661) #22 ROCK2 (ENSPTRG00000011658) #23 SLC66A3 (ENSPTRG00000011657) #24 C2AH2orf50 (ENSPTRG00000011656) #25 KCNF1 (ENSPTRG00000030563) #26 PDIA6 (ENSPTRG00000011653) #27 ATP6V1C2 (ENSPTRG00000011652) #29 NOL10 (ENSPTRG00000011651) #30 ODC1 (ENSPTRG00000011650) #31 HPCAL1 (ENSPTRG00000011649) #32 RRM2 (ENSPTRG00000042985) #33 CYS1 (ENSPTRG00000030565) ENSPTRG00000046195 KLF11 (ENSPTRG00000011645) #34 GRHL1 (ENSPTRG00000011643) #35 TAF1B (ENSPTRG00000011642) #36 Human MODERN SPECIES 11 KCNS3 (ENSG00000170745) MSGN1 (ENSG00000151379) GEN1 (ENSG00000178295) SMC6 (ENSG00000163029) VSNL1 (ENSG00000163032) RAD51AP2 (ENSG00000214842) CYRIA (ENSG00000197872) MYCN (ENSG00000134323) DDX1 (ENSG00000079785) NBAS (ENSG00000151779) LRATD1 (ENSG00000162981) TRIB2 (ENSG00000071575) #18 LPIN1 (ENSG00000134324) #19 NTSR2 (ENSG00000169006) #20 GREB1 (ENSG00000196208) #21 E2F6 (ENSG00000169016) #22 ROCK2 (ENSG00000134318) #23 SLC66A3 (ENSG00000162976) #24 C2orf50 (ENSG00000150873) #25 KCNF1 (ENSG00000162975) #26 PDIA6 (ENSG00000143870) #27 ATP6V1C2 (ENSG00000143882) #29 NOL10 (ENSG00000115761) #30 ODC1 (ENSG00000115758) #31 HPCAL1 (ENSG00000115756) #32 RRM2 (ENSG00000171848) #33 CYS1 (ENSG00000205795) KLF11 (ENSG00000172059) #34 GRHL1 (ENSG00000134317) #35 TAF1B (ENSG00000115750) #36 YWHAQ (ENSG00000134308) #37 Orangutan MODERN SPECIES 14 GEN1 (ENSPPYG00000012629) SMC6 (ENSPPYG00000012630) VSNL1 (ENSPPYG00000012631) RAD51AP2 (ENSPPYG00000012632) CYRIA (ENSPPYG00000012634) ENSPPYG00000038333 MYCN (ENSPPYG00000012635) DDX1 (ENSPPYG00000012638) NBAS (ENSPPYG00000012639) ENSPPYG00000030484 LRATD1 (ENSPPYG00000012640) TRIB2 (ENSPPYG00000038287) #18 LPIN1 (ENSPPYG00000012643) #19 NTSR2 (ENSPPYG00000012644) #20 GREB1 (ENSPPYG00000012645) #21 E2F6 (ENSPPYG00000036394) #22 ROCK2 (ENSPPYG00000012647) #23 SLC66A3 (ENSPPYG00000012648) #24 C2orf50 (ENSPPYG00000012710) #25 KCNF1 (ENSPPYG00000041457) #26 PDIA6 (ENSPPYG00000012651) #27 ATP6V1C2 (ENSPPYG00000012652) #29 NOL10 (ENSPPYG00000012653) #30 ODC1 (ENSPPYG00000012654) #31 HPCAL1 (ENSPPYG00000012655) #32 RRM2 (ENSPPYG00000012656) #33 CYS1 (ENSPPYG00000012657) KLF11 (ENSPPYG00000012659) #34 GRHL1 (ENSPPYG00000012661) #35 TAF1B (ENSPPYG00000012662) #36 YWHAQ (ENSPPYG00000012663) #37 Gibbon MODERN SPECIES 9 SMC6 (ENSNLEG00000001569) VSNL1 (ENSNLEG00000001537) RAD51AP2 (ENSNLEG00000001524) CYRIA (ENSNLEG00000001413) ENSNLEG00000031164 ENSNLEG00000014496 DDX1 (ENSNLEG00000014417) NBAS (ENSNLEG00000014272) ENSNLEG00000018294 ENSNLEG00000014270 TRIB2 (ENSNLEG00000014260) #18 ENSNLEG00000028139 LPIN1 (ENSNLEG00000014196) #19 NTSR2 (ENSNLEG00000014189) #20 GREB1 (ENSNLEG00000014178) #21 E2F6 (ENSNLEG00000014134) #22 ENSNLEG00000018147 ROCK2 (ENSNLEG00000014043) #23 SLC66A3 (ENSNLEG00000014031) #24 C2orf50 (ENSNLEG00000014028) #25 KCNF1 (ENSNLEG00000019349) #26 PDIA6 (ENSNLEG00000013916) #27 ATP6V1C2 (ENSNLEG00000013902) #29 NOL10 (ENSNLEG00000013851) #30 ODC1 (ENSNLEG00000013820) #31 HPCAL1 (ENSNLEG00000013802) #32 RRM2 (ENSNLEG00000035605) #33 ENSNLEG00000031728 ENSNLEG00000031300 KLF11 (ENSNLEG00000013701) #34 GRHL1 (ENSNLEG00000013634) #35 Platyrrhini ANCESTRAL SPECIES 45 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.e #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.y.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Cebidae ANCESTRAL SPECIES 40 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.f #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.y.a.b #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Cebidae_a ANCESTRAL SPECIES 46 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00390000003897.s.b.a.b.a.a ENSGT00770000121715 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.f #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.y.a.b #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Capuchin MODERN SPECIES 1 VSNL1 (ENSCCAG00000027421) RAD51AP2 (ENSCCAG00000024012) ENSCCAG00000027131 CYRIA (ENSCCAG00000019373) MYCN (ENSCCAG00000036405) ENSCCAG00000033245 ENSCCAG00000032936 DDX1 (ENSCCAG00000030085) NBAS (ENSCCAG00000028087) ENSCCAG00000024507 LRATD1 (ENSCCAG00000019002) TRIB2 (ENSCCAG00000013010) #18 LPIN1 (ENSCCAG00000030095) #19 NTSR2 (ENSCCAG00000036768) #20 GREB1 (ENSCCAG00000024488) #21 E2F6 (ENSCCAG00000023406) #22 ROCK2 (ENSCCAG00000024293) #23 SLC66A3 (ENSCCAG00000023484) #24 C2orf50 (ENSCCAG00000027477) #25 KCNF1 (ENSCCAG00000022210) #26 PDIA6 (ENSCCAG00000028275) #27 ATP6V1C2 (ENSCCAG00000034767) #29 NOL10 (ENSCCAG00000027373) #30 ODC1 (ENSCCAG00000021928) #31 HPCAL1 (ENSCCAG00000020323) #32 ENSCCAG00000009364 #33 CYS1 (ENSCCAG00000028829) KLF11 (ENSCCAG00000026312) #34 GRHL1 (ENSCCAG00000022259) #35 TAF1B (ENSCCAG00000031135) #36 YWHAQ (ENSCCAG00000031746) #37 Bolivian squirrel monkey MODERN SPECIES 63 TDRD3 (ENSSBOG00000022790) PCDH20 (ENSSBOG00000022134) PCDH9 (ENSSBOG00000023648) ENSSBOG00000029606 ENSSBOG00000030129 KLHL1 (ENSSBOG00000019967) ENSSBOG00000020963 LRATD1 (ENSSBOG00000015385) ENSSBOG00000025853 TRIB2 (ENSSBOG00000024296) #18 ENSSBOG00000021652 ENSSBOG00000033442 LPIN1 (ENSSBOG00000030601) #19 NTSR2 (ENSSBOG00000024980) #20 GREB1 (ENSSBOG00000026787) #21 E2F6 (ENSSBOG00000032095) #22 ROCK2 (ENSSBOG00000026163) #23 SLC66A3 (ENSSBOG00000021893) #24 C2orf50 (ENSSBOG00000027050) #25 KCNF1 (ENSSBOG00000032364) #26 PDIA6 (ENSSBOG00000016573) #27 ATP6V1C2 (ENSSBOG00000020727) #29 NOL10 (ENSSBOG00000025651) #30 ODC1 (ENSSBOG00000034688) #31 HPCAL1 (ENSSBOG00000026513) #32 ENSSBOG00000022360 #33 KLF11 (ENSSBOG00000018899) #34 GRHL1 (ENSSBOG00000011486) #35 TAF1B (ENSSBOG00000028943) #36 ENSSBOG00000033831 ##37 ADAM17 (ENSSBOG00000035331) Marmoset MODERN SPECIES 5 GEN1 (ENSCJAG00000007327) SMC6 (ENSCJAG00000007282) VSNL1 (ENSCJAG00000002578) RAD51AP2 (ENSCJAG00000007262) CYRIA (ENSCJAG00000043048) MYCN (ENSCJAG00000039364) ENSCJAG00000064948 DDX1 (ENSCJAG00000007076) NBAS (ENSCJAG00000007028) LRATD1 (ENSCJAG00000046159) TRIB2 (ENSCJAG00000046267) #18 ENSCJAG00000021005 LPIN1 (ENSCJAG00000006976) #19 NTSR2 (ENSCJAG00000006958) #20 GREB1 (ENSCJAG00000006946) #21 E2F6 (ENSCJAG00000006910) #22 ROCK2 (ENSCJAG00000006805) #23 SLC66A3 (ENSCJAG00000044173) #24 C2orf50 (ENSCJAG00000079383) #25 KCNF1 (ENSCJAG00000022930) #26 PDIA6 (ENSCJAG00000006694) #27 ATP6V1C2 (ENSCJAG00000006660) #29 NOL10 (ENSCJAG00000006602) #30 ODC1 (ENSCJAG00000006576) #31 HPCAL1 (ENSCJAG00000041528) #32 ENSCJAG00000006533 #33 KLF11 (ENSCJAG00000046813) #34 GRHL1 (ENSCJAG00000006431) #35 TAF1B (ENSCJAG00000006420) #36 YWHAQ (ENSCJAG00000040849) ##37 ENSCJAG00000062528 Mas night monkey MODERN SPECIES 1339 RAD51AP2 (ENSANAG00000027176) CYRIA (ENSANAG00000031083) MYCN (ENSANAG00000027525) ENSANAG00000027938 DDX1 (ENSANAG00000037912) NBAS (ENSANAG00000021700) ENSANAG00000026719 ENSANAG00000034033 LRATD1 (ENSANAG00000010804) ENSANAG00000027894 TRIB2 (ENSANAG00000029484) #18 ENSANAG00000006352 LPIN1 (ENSANAG00000028949) #19 NTSR2 (ENSANAG00000037146) #20 GREB1 (ENSANAG00000024688) #21 E2F6 (ENSANAG00000036636) #22 ROCK2 (ENSANAG00000028355) #23 ENSANAG00000021692 #24 C2orf50 (ENSANAG00000036655) #25 KCNF1 (ENSANAG00000036777) #26 PDIA6 (ENSANAG00000012637) #27 ENSANAG00000027269 #29 NOL10 (ENSANAG00000024937) #30 ODC1 (ENSANAG00000036668) #31 HPCAL1 (ENSANAG00000033383) #32 ENSANAG00000025761 #33 KLF11 (ENSANAG00000028728) #34 GRHL1 (ENSANAG00000025191) #35 TAF1B (ENSANAG00000031526) #36 YWHAQ (ENSANAG00000026145) ##37 ADAM17 (ENSANAG00000037496) Tarsier MODERN SPECIES 2455 GREB1 (ENSTSYG00000001231) #21 E2F6 (ENSTSYG00000014568) #22 Strepsirrhini ANCESTRAL SPECIES 13 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 137 KCNS3 (ENSOGAG00000007336) MSGN1 (ENSOGAG00000012569) GEN1 (ENSOGAG00000004816) SMC6 (ENSOGAG00000004809) VSNL1 (ENSOGAG00000030574) ENSOGAG00000031508 CYRIA (ENSOGAG00000009218) MYCN (ENSOGAG00000010927) DDX1 (ENSOGAG00000008730) NBAS (ENSOGAG00000008723) LRATD1 (ENSOGAG00000032892) TRIB2 (ENSOGAG00000002490) #18 LPIN1 (ENSOGAG00000013620) #19 NTSR2 (ENSOGAG00000013618) #20 GREB1 (ENSOGAG00000013608) #21 E2F6 (ENSOGAG00000013601) #22 ENSOGAG00000024515 ROCK2 (ENSOGAG00000009767) #23 SLC66A3 (ENSOGAG00000009765) #24 C2orf50 (ENSOGAG00000009762) #25 KCNF1 (ENSOGAG00000026918) #26 ENSOGAG00000033741 PDIA6 (ENSOGAG00000009751) #27 ATP6V1C2 (ENSOGAG00000009748) #29 NOL10 (ENSOGAG00000010494) #30 ENSOGAG00000033625 ENSOGAG00000001558 #31 HPCAL1 (ENSOGAG00000001557) #32 RRM2 (ENSOGAG00000007075) #33 ENSOGAG00000028490 KLF11 (ENSOGAG00000026035) #34 Bushbaby MODERN SPECIES 270 ENSOGAG00000024510 RADX (ENSOGAG00000007844) RNF128 (ENSOGAG00000012889) TBC1D8B (ENSOGAG00000012892) RIPPLY1 (ENSOGAG00000012901) CLDN2 (ENSOGAG00000012903) MORC4 (ENSOGAG00000013272) RBM41 (ENSOGAG00000009280) ENSOGAG00000024080 ENSOGAG00000028636 ENSOGAG00000029340 #22 DNAAF6 (ENSOGAG00000008183) FRMPD3 (ENSOGAG00000024885) ENSOGAG00000012070 ENSOGAG00000032050 MID2 (ENSOGAG00000010878) ENSOGAG00000033241 ENSOGAG00000010882 VSIG1 (ENSOGAG00000006414) ENSOGAG00000006419 ATG4A (ENSOGAG00000006422) COL4A6 (ENSOGAG00000015466) COL4A5 (ENSOGAG00000015475) ENSOGAG00000031230 IRS4 (ENSOGAG00000032032) GUCY2F (ENSOGAG00000011569) Lemuriformes ANCESTRAL SPECIES 23 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Lemuriformes_a ANCESTRAL SPECIES 10 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000183424 ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Greater bamboo lemur MODERN SPECIES 339 GEN1 (ENSPSMG00000007525) SMC6 (ENSPSMG00000007622) VSNL1 (ENSPSMG00000007643) RAD51AP2 (ENSPSMG00000007652) ENSPSMG00000007660 CYRIA (ENSPSMG00000007716) ENSPSMG00000007732 ENSPSMG00000007742 DDX1 (ENSPSMG00000007970) NBAS (ENSPSMG00000008335) LRATD1 (ENSPSMG00000008472) TRIB2 (ENSPSMG00000008501) #18 LPIN1 (ENSPSMG00000008652) #19 NTSR2 (ENSPSMG00000008712) #20 GREB1 (ENSPSMG00000008813) #21 E2F6 (ENSPSMG00000008847) #22 Coquerels sifaka MODERN SPECIES 422 TRIB2 (ENSPCOG00000018790) #18 LPIN1 (ENSPCOG00000019468) #19 NTSR2 (ENSPCOG00000027931) #20 GREB1 (ENSPCOG00000012601) #21 ENSPCOG00000023501 ENSPCOG00000025479 #22 ROCK2 (ENSPCOG00000017423) #23 SLC66A3 (ENSPCOG00000012606) #24 C2orf50 (ENSPCOG00000015622) #25 KCNF1 (ENSPCOG00000022385) #26 PDIA6 (ENSPCOG00000024183) #27 ATP6V1C2 (ENSPCOG00000017434) #29 NOL10 (ENSPCOG00000024792) #30 ENSPCOG00000013163 #31 Mouse lemur MODERN SPECIES 30 ENSMICG00000029479 GEN1 (ENSMICG00000026479) SMC6 (ENSMICG00000010802) VSNL1 (ENSMICG00000036354) RAD51AP2 (ENSMICG00000038023) CYRIA (ENSMICG00000013924) MYCN (ENSMICG00000013903) DDX1 (ENSMICG00000001023) NBAS (ENSMICG00000001009) ENSMICG00000036925 LRATD1 (ENSMICG00000042880) TRIB2 (ENSMICG00000031869) #18 LPIN1 (ENSMICG00000017709) #19 NTSR2 (ENSMICG00000017708) #20 GREB1 (ENSMICG00000017707) #21 E2F6 (ENSMICG00000017705) #22 ENSMICG00000028029 ROCK2 (ENSMICG00000037673) #23 KCNF1 (ENSMICG00000017370) #26 ENSMICG00000017368 #27 ATP6V1C2 (ENSMICG00000017366) #29 NOL10 (ENSMICG00000004805) #30 ENSMICG00000012511 #31 HPCAL1 (ENSMICG00000029256) #32 ENSMICG00000012789 #33 CYS1 (ENSMICG00000027772) KLF11 (ENSMICG00000012761) #34 GRHL1 (ENSMICG00000012737) #35 TAF1B (ENSMICG00000012714) #36 SLC66A3 (ENSMICG00000043387) #24 ENSMICG00000045104 #25 Euarchontoglires_A ANCESTRAL SPECIES 14 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Tree shrew MODERN SPECIES 1544 ENSTBEG00000000331 E2F6 (ENSTBEG00000008180) #22 ROCK2 (ENSTBEG00000007626) #23 Glires ANCESTRAL SPECIES 13 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Lagomorpha ANCESTRAL SPECIES 226 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 Pika MODERN SPECIES 3198 E2F6 (ENSOPRG00000003258) #22 Rabbit MODERN SPECIES 528 ENSOCUG00000027882 #21 E2F6 (ENSOCUG00000035534) #22 ROCK2 (ENSOCUG00000017477) #23 SLC66A3 (ENSOCUG00000022692) #24 KCNF1 (ENSOCUG00000008435) #26 PDIA6 (ENSOCUG00000012991) #27 ATP6V1C2 (ENSOCUG00000022981) #29 NOL10 (ENSOCUG00000016892) #30 ODC1 (ENSOCUG00000004925) #31 HPCAL1 (ENSOCUG00000024743) #32 RRM2 (ENSOCUG00000005820) #33 Rodentia ANCESTRAL SPECIES 15 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Rodentia_A DUPLICATION Rodentia_A ANCESTRAL SPECIES ENSGT00940000155734.p #22 Sciuridae ANCESTRAL SPECIES ENSGT00940000155734.p #22 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 156 USP27X (ENSSVLG00005017235) CLCN5 (ENSSVLG00005017046) AKAP4 (ENSSVLG00005016895) ENSSVLG00005016807 DGKK (ENSSVLG00005016570) SHROOM4 (ENSSVLG00005016405) BMP15 (ENSSVLG00005016372) NUDT10 (ENSSVLG00005016353) NUDT11 (ENSSVLG00005016221) ENSSVLG00005016209 ENSSVLG00005016195 ENSSVLG00005016175 GSPT2 (ENSSVLG00005016154) ENSSVLG00005016087 MAGED1 (ENSSVLG00005015981) ENSSVLG00005015906 #22 ENSSVLG00005015867 ENSSVLG00005015851 GPR173 (ENSSVLG00005015827) TSPYL2 (ENSSVLG00005015733) ENSSVLG00005015688 KANTR (ENSSVLG00005015675) KDM5C (ENSSVLG00005015304) IQSEC2 (ENSSVLG00005015113) ENSSVLG00005015050 SMC1A (ENSSVLG00005014765) RIBC1 (ENSSVLG00005014562) HSD17B10 (ENSSVLG00005014486) HUWE1 (ENSSVLG00005013657) PHF8 (ENSSVLG00005013001) FAM120C (ENSSVLG00005012884) Eurasian red squirrel MODERN SPECIES 153 ENSSVLG00005012612 #22 Marmotini ANCESTRAL SPECIES ENSGT00940000155734.p #22 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 158 ENSMMMG00000024247 #22 ENSMMMG00000024249 #22 ENSMMMG00000024252 Alpin marmot MODERN SPECIES 158 ENSMMMG00000024252 ENSMMMG00000024249 #22 ENSMMMG00000024247 #22 Marmotini_b ANCESTRAL SPECIES ENSGT00940000155734.p #22 Squirrel MODERN SPECIES 472 ENSSTOG00000000889 ENSSTOG00000022583 #22 ENSSTOG00000034082 Arctic ground squirrel MODERN SPECIES 1102 ENSUPAG00010000243 #22 Rodentia_A ANCESTRAL SPECIES 14 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.cb ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Hystricomorpha ANCESTRAL SPECIES 64 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00390000013305.a.a.u.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Hystricomorpha_a ANCESTRAL SPECIES 70 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.b ##37 ENSGT01090000260040.b.b.b.b.a.a #37 Hystricomorpha_b ANCESTRAL SPECIES 91 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000170593 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.u.a #33 ENSGT00390000013305.a.a.v #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.b ##37 Degu DUPLICATION Degu MODERN SPECIES 82 CNKSR2 (ENSODEG00000014138) SMPX (ENSODEG00000013724) ENSODEG00000012861 MBTPS2 (ENSODEG00000013500) ENSODEG00000013775 ENSODEG00000020031 PHEX (ENSODEG00000012854) ENSODEG00000020024 ENSODEG00000014216 PTCHD1 (ENSODEG00000012754) ENSODEG00000013046 ENSODEG00000013721 ENSODEG00000012907 #22 PRDX4 (ENSODEG00000014100) ENSODEG00000012911 ENSODEG00000013771 ENSODEG00000014344 APOO (ENSODEG00000014624) KLHL15 (ENSODEG00000013753) ENSODEG00000014340 ENSODEG00000013609 ENSODEG00000014084 ZFX (ENSODEG00000012957) PDK3 (ENSODEG00000013024) PCYT1B (ENSODEG00000012646) ENSODEG00000013614 POLA1 (ENSODEG00000013021) ARX (ENSODEG00000013376) Degu MODERN SPECIES 192 ENSODEG00000000782 CYRIA (ENSODEG00000000749) ENSODEG00000018616 ENSODEG00000018613 MYCN (ENSODEG00000000716) DDX1 (ENSODEG00000000569) ENSODEG00000000457 NBAS (ENSODEG00000003327) ENSODEG00000003226 LRATD1 (ENSODEG00000003163) TRIB2 (ENSODEG00000003153) #18 LPIN1 (ENSODEG00000003117) #19 GREB1 (ENSODEG00000002144) #21 ENSODEG00000001238 #22 ENSODEG00000001198 #23 ENSODEG00000001162 #23 ENSODEG00000000987 #24 ENSODEG00000000975 ENSODEG00000000842 #27 ATP6V1C2 (ENSODEG00000000754) #29 NOL10 (ENSODEG00000000508) #30 ODC1 (ENSODEG00000000437) #31 ENSODEG00000002415 #32 RRM2 (ENSODEG00000002317) #33 ENSODEG00000002288 #34 GRHL1 (ENSODEG00000002151) #35 TAF1B (ENSODEG00000002052) #36 ENSODEG00000001535 YWHAQ (ENSODEG00000001504) #37 Long-tailed chinchilla MODERN SPECIES 194 CYRIA (ENSCLAG00000007123) MYCN (ENSCLAG00000006932) DDX1 (ENSCLAG00000005434) NBAS (ENSCLAG00000002538) LRATD1 (ENSCLAG00000002355) TRIB2 (ENSCLAG00000002309) #18 LPIN1 (ENSCLAG00000001810) #19 GREB1 (ENSCLAG00000005662) #21 E2F6 (ENSCLAG00000004863) #22 ROCK2 (ENSCLAG00000009471) #23 SLC66A3 (ENSCLAG00000008584) #24 ENSCLAG00000007661 KCNF1 (ENSCLAG00000017968) #26 PDIA6 (ENSCLAG00000006956) #27 ATP6V1C2 (ENSCLAG00000006612) #29 NOL10 (ENSCLAG00000002234) #30 ODC1 (ENSCLAG00000002140) #31 HPCAL1 (ENSCLAG00000002037) #32 ENSCLAG00000002025 RRM2 (ENSCLAG00000001926) #33 ENSCLAG00000004146 #34 GRHL1 (ENSCLAG00000004000) #35 TAF1B (ENSCLAG00000003776) #36 YWHAQ (ENSCLAG00000003576) ##37 Guinea pig MODERN SPECIES 125 ENSCPOG00000037178 TRIB2 (ENSCPOG00000040411) #18 LPIN1 (ENSCPOG00000013546) #19 GREB1 (ENSCPOG00000006588) #21 E2F6 (ENSCPOG00000019385) #22 ROCK2 (ENSCPOG00000012664) #23 SLC66A3 (ENSCPOG00000031555) #24 C2orf50 (ENSCPOG00000034329) #25 KCNF1 (ENSCPOG00000015432) #26 PDIA6 (ENSCPOG00000010804) #27 ATP6V1C2 (ENSCPOG00000008738) #29 NOL10 (ENSCPOG00000007706) #30 ODC1 (ENSCPOG00000008476) #31 HPCAL1 (ENSCPOG00000034185) #32 RRM2 (ENSCPOG00000008652) #33 KLF11 (ENSCPOG00000025767) #34 GRHL1 (ENSCPOG00000010783) #35 Naked mole-rat female MODERN SPECIES 19 ENSHGLG00000000512 ADAM17 (ENSHGLG00000000502) ENSHGLG00000000473 #37 ENSHGLG00000000328 ENSHGLG00000049295 ENSHGLG00000049886 NBAS (ENSHGLG00000000885) ENSHGLG00000047840 LRATD1 (ENSHGLG00000004468) ENSHGLG00000005931 ENSHGLG00000001922 TRIB2 (ENSHGLG00000050246) #18 LPIN1 (ENSHGLG00000000436) #19 NTSR2 (ENSHGLG00000048775) #20 ENSHGLG00000000910 #21 ENSHGLG00000004114 #22 ENSHGLG00000046079 SLC66A3 (ENSHGLG00000001582) #24 ENSHGLG00000001946 #25 ENSHGLG00000000514 #23 KCNF1 (ENSHGLG00000003808) #26 ENSHGLG00000050301 ENSHGLG00000047929 PDIA6 (ENSHGLG00000000403) #27 ATP6V1C2 (ENSHGLG00000001064) #29 NOL10 (ENSHGLG00000001564) #30 ENSHGLG00000000300 #31 HPCAL1 (ENSHGLG00000000540) #32 RRM2 (ENSHGLG00000000884) #33 ENSHGLG00000002385 KLF11 (ENSHGLG00000033218) #34 Sciuridae ANCESTRAL SPECIES 16 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.cb ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v.b #33 ENSGT00390000016845 ENSGT00940000155982.b #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Marmotini ANCESTRAL SPECIES 14 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.cb ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v.b #33 ENSGT00390000016845 ENSGT00940000155982.b #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Marmotini_b ANCESTRAL SPECIES 17 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.cb ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a.k #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v.b #33 ENSGT00940000155982.b #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.b ##37 ENSGT00940000155443 Arctic ground squirrel MODERN SPECIES MSGN1 (ENSUPAG00010009556) GEN1 (ENSUPAG00010009557) SMC6 (ENSUPAG00010009564) VSNL1 (ENSUPAG00010009655) RAD51AP2 (ENSUPAG00010009663) CYRIA (ENSUPAG00010009668) MYCN (ENSUPAG00010009702) ENSUPAG00010009708 DDX1 (ENSUPAG00010009711) NBAS (ENSUPAG00010009750) LRATD1 (ENSUPAG00010009896) TRIB2 (ENSUPAG00010009911) #18 LPIN1 (ENSUPAG00010009943) #19 NTSR2 (ENSUPAG00010011106) #20 GREB1 (ENSUPAG00010011107) #21 E2F6 (ENSUPAG00010011151) #22 ENSUPAG00010011160 ROCK2 (ENSUPAG00010011170) #23 SLC66A3 (ENSUPAG00010011204) #24 C2orf50 (ENSUPAG00010011218) #25 KCNF1 (ENSUPAG00010011227) #26 PDIA6 (ENSUPAG00010011237) #27 ATP6V1C2 (ENSUPAG00010011265) #29 NOL10 (ENSUPAG00010011386) #30 ODC1 (ENSUPAG00010011416) #31 HPCAL1 (ENSUPAG00010011428) #32 CYS1 (ENSUPAG00010011444) KLF11 (ENSUPAG00010011457) #34 GRHL1 (ENSUPAG00010011483) #35 TAF1B (ENSUPAG00010011508) #36 YWHAQ (ENSUPAG00010011534) ##37 Squirrel MODERN SPECIES 132 ENSSTOG00000002702 #18 LPIN1 (ENSSTOG00000010854) #19 NTSR2 (ENSSTOG00000010000) #20 GREB1 (ENSSTOG00000026032) #21 E2F6 (ENSSTOG00000003316) #22 ROCK2 (ENSSTOG00000002624) #23 SLC66A3 (ENSSTOG00000027023) #24 C2orf50 (ENSSTOG00000002600) #25 PDIA6 (ENSSTOG00000005550) #27 ATP6V1C2 (ENSSTOG00000005527) #29 NOL10 (ENSSTOG00000005485) #30 ENSSTOG00000000386 #31 HPCAL1 (ENSSTOG00000001514) #32 ENSSTOG00000033669 #33 ENSSTOG00000030936 #34 GRHL1 (ENSSTOG00000019842) #35 TAF1B (ENSSTOG00000002419) #36 ENSSTOG00000024378 ##37 ADAM17 (ENSSTOG00000004510) ENSSTOG00000004500 Alpin marmot MODERN SPECIES 6 KCNS3 (ENSMMMG00000022292) MSGN1 (ENSMMMG00000022303) GEN1 (ENSMMMG00000022304) SMC6 (ENSMMMG00000022309) VSNL1 (ENSMMMG00000022330) RAD51AP2 (ENSMMMG00000022347) CYRIA (ENSMMMG00000022371) ENSMMMG00000022385 ENSMMMG00000022387 DDX1 (ENSMMMG00000022392) NBAS (ENSMMMG00000022403) LRATD1 (ENSMMMG00000022451) TRIB2 (ENSMMMG00000022461) #18 LPIN1 (ENSMMMG00000022468) #19 GREB1 (ENSMMMG00000022514) #21 E2F6 (ENSMMMG00000022544) #22 ROCK2 (ENSMMMG00000022550) #23 SLC66A3 (ENSMMMG00000022562) #24 C2orf50 (ENSMMMG00000022565) #25 KCNF1 (ENSMMMG00000022573) #26 PDIA6 (ENSMMMG00000022575) #27 ATP6V1C2 (ENSMMMG00000022583) #29 NOL10 (ENSMMMG00000022607) #30 ODC1 (ENSMMMG00000022615) #31 HPCAL1 (ENSMMMG00000022618) #32 ENSMMMG00000022624 #33 ENSMMMG00000022625 KLF11 (ENSMMMG00000022629) #34 GRHL1 (ENSMMMG00000022631) #35 TAF1B (ENSMMMG00000022638) #36 YWHAQ (ENSMMMG00000022652) #37 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 11 ENSSVLG00005000200 ENSSVLG00005000184 ENSSVLG00005000172 MKRN3 (ENSSVLG00005000160) MAGEL2 (ENSSVLG00005000130) NDN (ENSSVLG00005000123) ENSSVLG00005000097 ENSSVLG00005011846 ENSSVLG00005011795 SNURF (ENSSVLG00005011691) SNRPN (ENSSVLG00005011766) ENSSVLG00005011656 ENSSVLG00005011544 ENSSVLG00005011480 UBE3A (ENSSVLG00005011271) ENSSVLG00005011214 #22 ENSSVLG00005011189 ATP10A (ENSSVLG00005010147) GABRB3 (ENSSVLG00005009710) GABRA5 (ENSSVLG00005009605) GABRG3 (ENSSVLG00005009456) ENSSVLG00005009420 OCA2 (ENSSVLG00005009249) HERC2 (ENSSVLG00005008754) ENSSVLG00005008701 NIPA1 (ENSSVLG00005008682) ENSSVLG00005008620 CYFIP1 (ENSSVLG00005008475) TUBGCP5 (ENSSVLG00005008437) FAH (ENSSVLG00005008412) ZFAND6 (ENSSVLG00005008321) Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 71 ENSSVLG00005014067 ENSSVLG00005014131 #22 Eurasian red squirrel MODERN SPECIES 10 ENSSVLG00005014982 ENSSVLG00005014904 ENSSVLG00005014715 ENSSVLG00005014604 ENSSVLG00005014524 #22 ENSSVLG00005014484 ENSSVLG00005014452 ENSSVLG00005014399 ENSSVLG00005014356 ENSSVLG00005014214 ENSSVLG00005014121 ENSSVLG00005014073 ENSSVLG00005014042 ENSSVLG00005013904 ENSSVLG00005013793 ENSSVLG00005013731 ENSSVLG00005013708 ENSSVLG00005013669 ENSSVLG00005013626 ENSSVLG00005013547 Eurasian red squirrel MODERN SPECIES 70 ENSSVLG00005014037 #22 Eurasian red squirrel MODERN SPECIES 7 ENSSVLG00005023451 ENSSVLG00005023495 ENSSVLG00005023529 ENSSVLG00005023599 ENSSVLG00005023841 ENSSVLG00005024507 ENSSVLG00005024537 ENSSVLG00005024554 ENSSVLG00005024564 ENSSVLG00005024578 ENSSVLG00005024612 ENSSVLG00005024680 ENSSVLG00005024727 ENSSVLG00005024783 ENSSVLG00005024800 ENSSVLG00005024828 #22 ENSSVLG00005024837 ENSSVLG00005025145 ENSSVLG00005025508 Eurasian red squirrel MODERN SPECIES 5 VSNL1 (ENSSVLG00005025182) RAD51AP2 (ENSSVLG00005025196) ENSSVLG00005025209 CYRIA (ENSSVLG00005025229) ENSSVLG00005025253 ENSSVLG00005025265 DDX1 (ENSSVLG00005025306) ENSSVLG00005025381 NBAS (ENSSVLG00005025400) LRATD1 (ENSSVLG00005025440) ENSSVLG00005016163 TRIB2 (ENSSVLG00005016251) #18 LPIN1 (ENSSVLG00005016318) #19 NTSR2 (ENSSVLG00005017070) #20 GREB1 (ENSSVLG00005017159) #21 ENSSVLG00005017788 #22 ENSSVLG00005017989 ROCK2 (ENSSVLG00005018051) #23 SLC66A3 (ENSSVLG00005018165) #24 C2orf50 (ENSSVLG00005018240) #25 KCNF1 (ENSSVLG00005018274) #26 PDIA6 (ENSSVLG00005018305) #27 ATP6V1C2 (ENSSVLG00005018543) #29 ENSSVLG00005018931 NOL10 (ENSSVLG00005018977) #30 ENSSVLG00005019056 #31 HPCAL1 (ENSSVLG00005019176) #32 ENSSVLG00005019233 #33 CYS1 (ENSSVLG00005019295) KLF11 (ENSSVLG00005019337) #34 ENSSVLG00005019438 #35 Rodentia_B ANCESTRAL SPECIES 14 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Kangaroo rat MODERN SPECIES 339 Rdh14 (ENSDORG00000019712) Kcns3 (ENSDORG00000024097) Msgn1 (ENSDORG00000003509) Gen1 (ENSDORG00000010754) Smc6 (ENSDORG00000010753) Vsnl1 (ENSDORG00000024043) ENSDORG00000026713 Cyria (ENSDORG00000010274) Mycn (ENSDORG00000009906) Ddx1 (ENSDORG00000012847) Nbas (ENSDORG00000012843) Lratd1 (ENSDORG00000023584) Trib2 (ENSDORG00000030161) #18 Lpin1 (ENSDORG00000010485) #19 Greb1 (ENSDORG00000009946) #21 E2f6 (ENSDORG00000013213) #22 Rock2 (ENSDORG00000008054) #23 Pqlc3 (ENSDORG00000025612) #24 ENSDORG00000027660 #25 Kcnf1 (ENSDORG00000026132) #26 Pdia6 (ENSDORG00000003594) #27 Atp6v1c2 (ENSDORG00000003593) #29 Nol10 (ENSDORG00000001331) #30 Odc1 (ENSDORG00000002669) #31 Hpcal1 (ENSDORG00000007055) #32 Rrm2 (ENSDORG00000002514) #33 ENSDORG00000024620 #34 ENSDORG00000024766 #35 ENSDORG00000028599 #35 Taf1b (ENSDORG00000010154) #36 ENSDORG00000028741 ##37 Myomorpha ANCESTRAL SPECIES 24 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Lesser Egyptian jerboa MODERN SPECIES 123 Mycn (ENSJJAG00000012777) Ddx1 (ENSJJAG00000013315) Nbas (ENSJJAG00000017359) Lratd1 (ENSJJAG00000013761) ENSJJAG00000013963 ENSJJAG00000014823 ENSJJAG00000016404 ENSJJAG00000016696 #18 ENSJJAG00000012584 Lpin1 (ENSJJAG00000003641) #19 Ntsr2 (ENSJJAG00000010812) #20 Greb1 (ENSJJAG00000018756) #21 E2f6 (ENSJJAG00000023699) #22 Rock2 (ENSJJAG00000000496) #23 ENSJJAG00000000353 Pqlc3 (ENSJJAG00000001428) #24 ENSJJAG00000003503 #25 Kcnf1 (ENSJJAG00000012515) #26 Pdia6 (ENSJJAG00000011060) #27 Atp6v1c2 (ENSJJAG00000011787) #29 Nol10 (ENSJJAG00000013166) #30 ENSJJAG00000013286 #31 Hpcal1 (ENSJJAG00000013350) #32 ENSJJAG00000013475 #33 ENSJJAG00000012792 B3gnt5 (ENSJJAG00000012804) Taf1b (ENSJJAG00000015578) #36 Grhl1 (ENSJJAG00000018256) #35 Muroidea ANCESTRAL SPECIES 21 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Upper Galilee mountains blind mole rat MODERN SPECIES 1517 ENSNGAG00000020800 Lratd1 (ENSNGAG00000021060) Trib2 (ENSNGAG00000002186) #18 Lpin1 (ENSNGAG00000017494) #19 ENSNGAG00000008223 #20 Greb1 (ENSNGAG00000019611) #21 E2f6 (ENSNGAG00000012686) #22 Rock2 (ENSNGAG00000019681) #23 Pqlc3 (ENSNGAG00000009941) #24 ENSNGAG00000011266 #25 Kcnf1 (ENSNGAG00000017575) #26 Pdia6 (ENSNGAG00000014585) #27 Atp6v1c2 (ENSNGAG00000000867) #29 Nol10 (ENSNGAG00000015506) #30 ENSNGAG00000019061 ENSNGAG00000001599 #31 Hpcal1 (ENSNGAG00000012465) #32 Rrm2 (ENSNGAG00000013008) #33 Cys1 (ENSNGAG00000015080) Klf11 (ENSNGAG00000018758) #34 Grhl1 (ENSNGAG00000004562) #35 Taf1b (ENSNGAG00000010048) #36 Muroidea_A ANCESTRAL SPECIES 24 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Murinae ANCESTRAL SPECIES 8 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 Rat MODERN SPECIES 16 Smc6 (ENSRNOG00000004908) Vsnl1 (ENSRNOG00000005345) Rad51ap2 (ENSRNOG00000049271) AABR07072562.1 (ENSRNOG00000050653) Cyria (ENSRNOG00000052758) LOC100360357 (ENSRNOG00000065320) Mycn (ENSRNOG00000051372) ENSRNOG00000064235 Ddx1 (ENSRNOG00000006652) Nbas (ENSRNOG00000024503) Lratd1 (ENSRNOG00000004084) Trib2 (ENSRNOG00000004110) #18 Lpin1 (ENSRNOG00000004377) #19 Ntsr2 (ENSRNOG00000049054) #20 Greb1 (ENSRNOG00000024651) #21 E2f6 (ENSRNOG00000004449) #22 Rock2 (ENSRNOG00000004496) #23 Slc66a3 (ENSRNOG00000005126) #24 C6h2orf50 (ENSRNOG00000024338) #25 Kcnf1 (ENSRNOG00000024310) #26 Pdia6 (ENSRNOG00000050197) #27 Atp6v1c2 (ENSRNOG00000050553) #29 Nol10 (ENSRNOG00000005344) #30 AABR07063703.1 (ENSRNOG00000046279) Odc1 (ENSRNOG00000005424) #31 LOC120093238 (ENSRNOG00000032523) Hpcal1 (ENSRNOG00000005492) #32 Asap2 (ENSRNOG00000061519) Itgb1bp1 (ENSRNOG00000059402) Cpsf3 (ENSRNOG00000052418) Iah1 (ENSRNOG00000060853) Mus ANCESTRAL SPECIES 10 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.b.a.a #37 Shrew mouse MODERN SPECIES 20 Kcns3 (MGP_PahariEiJ_G0029370) Msgn1 (MGP_PahariEiJ_G0029371) Gen1 (MGP_PahariEiJ_G0029372) Smc6 (MGP_PahariEiJ_G0029373) Vsnl1 (MGP_PahariEiJ_G0029374) Rad51ap2 (MGP_PahariEiJ_G0029375) Cyria (MGP_PahariEiJ_G0029376) Mycn (MGP_PahariEiJ_G0029377) Ddx1 (MGP_PahariEiJ_G0029378) Nbas (MGP_PahariEiJ_G0029379) Lratd1 (MGP_PahariEiJ_G0029380) Trib2 (MGP_PahariEiJ_G0029381) #18 Lpin1 (MGP_PahariEiJ_G0029382) #19 MGP_PahariEiJ_G0029383 #20 Greb1 (MGP_PahariEiJ_G0029384) #21 E2f6 (MGP_PahariEiJ_G0029385) #22 MGP_PahariEiJ_G0029386 Rock2 (MGP_PahariEiJ_G0029387) #23 Pqlc3 (MGP_PahariEiJ_G0029388) #24 MGP_PahariEiJ_G0029389 #25 Kcnf1 (MGP_PahariEiJ_G0029390) #26 Pdia6 (MGP_PahariEiJ_G0029391) #27 Atp6v1c2 (MGP_PahariEiJ_G0029392) #29 Nol10 (MGP_PahariEiJ_G0029393) #30 Odc1 (MGP_PahariEiJ_G0029394) #31 Asap2 (MGP_PahariEiJ_G0029395) Itgb1bp1 (MGP_PahariEiJ_G0029396) Cpsf3 (MGP_PahariEiJ_G0029397) Iah1 (MGP_PahariEiJ_G0029398) Adam17 (MGP_PahariEiJ_G0029399) MGP_PahariEiJ_G0029400 #37 Mus_A ANCESTRAL SPECIES 17 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.c #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.e #31 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.b.a.a #37 Ryukyu mouse MODERN SPECIES 3 MGP_CAROLIEiJ_G0017614 Msgn1 (MGP_CAROLIEiJ_G0017615) Gen1 (MGP_CAROLIEiJ_G0017616) Smc6 (MGP_CAROLIEiJ_G0017617) Vsnl1 (MGP_CAROLIEiJ_G0017618) Rad51ap2 (MGP_CAROLIEiJ_G0017619) Cyria (MGP_CAROLIEiJ_G0017620) Mycn (MGP_CAROLIEiJ_G0017621) Ddx1 (MGP_CAROLIEiJ_G0017622) Nbas (MGP_CAROLIEiJ_G0017623) Lratd1 (MGP_CAROLIEiJ_G0017624) Trib2 (MGP_CAROLIEiJ_G0017625) #18 Lpin1 (MGP_CAROLIEiJ_G0017626) #19 Ntsr2 (MGP_CAROLIEiJ_G0017627) #20 Greb1 (MGP_CAROLIEiJ_G0017628) #21 MGP_CAROLIEiJ_G0017629 #22 Rock2 (MGP_CAROLIEiJ_G0017630) #23 MGP_CAROLIEiJ_G0017631 #24 MGP_CAROLIEiJ_G0017632 #25 Kcnf1 (MGP_CAROLIEiJ_G0017633) #26 Pdia6 (MGP_CAROLIEiJ_G0017634) #27 Atp6v1c2 (MGP_CAROLIEiJ_G0017635) #29 Nol10 (MGP_CAROLIEiJ_G0017636) #30 Odc1 (MGP_CAROLIEiJ_G0017637) #31 Asap2 (MGP_CAROLIEiJ_G0017638) Itgb1bp1 (MGP_CAROLIEiJ_G0017639) Cpsf3 (MGP_CAROLIEiJ_G0017640) Iah1 (MGP_CAROLIEiJ_G0017641) Adam17 (MGP_CAROLIEiJ_G0017642) Ywhaq (MGP_CAROLIEiJ_G0017643) #37 Taf1b (MGP_CAROLIEiJ_G0017644) #36 Mus_B ANCESTRAL SPECIES 17 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.c #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.e #31 ENSGT00940000154645.A #32 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 Mouse MODERN SPECIES 3 Kcns3 (ENSMUSG00000043673) Msgn1 (ENSMUSG00000047002) Gen1 (ENSMUSG00000051235) Smc6 (ENSMUSG00000020608) Vsnl1 (ENSMUSG00000054459) Rad51ap2 (ENSMUSG00000086022) Cyria (ENSMUSG00000020589) Mycn (ENSMUSG00000037169) Ddx1 (ENSMUSG00000037149) Nbas (ENSMUSG00000020576) Lratd1 (ENSMUSG00000020607) Trib2 (ENSMUSG00000020601) #18 Lpin1 (ENSMUSG00000020593) #19 Ntsr2 (ENSMUSG00000020591) #20 Greb1 (ENSMUSG00000036523) #21 E2f6 (ENSMUSG00000057469) #22 Rock2 (ENSMUSG00000020580) #23 Pqlc3 (ENSMUSG00000045679) #24 2410004P03Rik (ENSMUSG00000071398) Kcnf1 (ENSMUSG00000051726) #26 Pdia6 (ENSMUSG00000020571) #27 Atp6v1c2 (ENSMUSG00000020566) #29 Nol10 (ENSMUSG00000061458) #30 Odc1 (ENSMUSG00000011179) #31 Hpcal1 (ENSMUSG00000071379) #32 5730507C01Rik (ENSMUSG00000073197) Gm21863 (ENSMUSG00000095470) Asap2 (ENSMUSG00000052632) Itgb1bp1 (ENSMUSG00000062352) Cpsf3 (ENSMUSG00000054309) Iah1 (ENSMUSG00000062054) Mus_C ANCESTRAL SPECIES 11 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.c #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.e #31 ENSGT00940000154645.A #32 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.b.a.a #37 spretus MODERN SPECIES 3 Kcns3 (MGP_SPRETEiJ_G0018456) Msgn1 (MGP_SPRETEiJ_G0018457) Gen1 (MGP_SPRETEiJ_G0018458) Smc6 (MGP_SPRETEiJ_G0018459) Vsnl1 (MGP_SPRETEiJ_G0018460) Rad51ap2 (MGP_SPRETEiJ_G0018461) Cyria (MGP_SPRETEiJ_G0018462) Mycn (MGP_SPRETEiJ_G0018463) Ddx1 (MGP_SPRETEiJ_G0018464) Nbas (MGP_SPRETEiJ_G0018465) Lratd1 (MGP_SPRETEiJ_G0018466) Trib2 (MGP_SPRETEiJ_G0018467) #18 Lpin1 (MGP_SPRETEiJ_G0018468) #19 Ntsr2 (MGP_SPRETEiJ_G0018469) #20 Greb1 (MGP_SPRETEiJ_G0018470) #21 E2f6 (MGP_SPRETEiJ_G0018471) #22 Rock2 (MGP_SPRETEiJ_G0018472) #23 MGP_SPRETEiJ_G0018473 #24 2410004P03Rik (MGP_SPRETEiJ_G0018474) Kcnf1 (MGP_SPRETEiJ_G0018475) #26 Pdia6 (MGP_SPRETEiJ_G0018476) #27 Atp6v1c2 (MGP_SPRETEiJ_G0018477) #29 Nol10 (MGP_SPRETEiJ_G0018478) #30 Asap2 (MGP_SPRETEiJ_G0018479) Itgb1bp1 (MGP_SPRETEiJ_G0018480) Cpsf3 (MGP_SPRETEiJ_G0018481) Iah1 (MGP_SPRETEiJ_G0018482) Adam17 (MGP_SPRETEiJ_G0018483) Ywhaq (MGP_SPRETEiJ_G0018484) #37 Taf1b (MGP_SPRETEiJ_G0018485) #36 MGP_SPRETEiJ_G0018486 Steppe mouse MODERN SPECIES 80 Trib2 (ENSMSIG00000011506) #18 Lpin1 (ENSMSIG00000011530) #19 Ntsr2 (ENSMSIG00000011617) #20 Greb1 (ENSMSIG00000011634) #21 E2f6 (ENSMSIG00000011903) #22 Rock2 (ENSMSIG00000011916) #23 ENSMSIG00000012001 Pqlc3 (ENSMSIG00000012026) #24 ENSMSIG00000012066 #25 Kcnf1 (ENSMSIG00000012076) #26 Pdia6 (ENSMSIG00000012089) #27 Atp6v1c2 (ENSMSIG00000012116) #29 Nol10 (ENSMSIG00000012486) #30 ENSMSIG00000012578 #31 Hpcal1 (ENSMSIG00000012615) #32 ENSMSIG00000012665 ENSMSIG00000012676 Cricetidae ANCESTRAL SPECIES 24 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Cricetinae ANCESTRAL SPECIES ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165.c ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.g #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Golden Hamster MODERN SPECIES 796 Lratd1 (ENSMAUG00000000064) ENSMAUG00000000600 Trib2 (ENSMAUG00000000507) #18 Lpin1 (ENSMAUG00000017619) #19 Ntsr2 (ENSMAUG00000016529) #20 Greb1 (ENSMAUG00000015451) #21 E2f6 (ENSMAUG00000014225) #22 ENSMAUG00000013207 #23 ENSMAUG00000015383 #23 Pqlc3 (ENSMAUG00000013741) #24 ENSMAUG00000013971 #25 Kcnf1 (ENSMAUG00000012316) #26 Pdia6 (ENSMAUG00000012881) #27 Atp6v1c2 (ENSMAUG00000012261) #29 Nol10 (ENSMAUG00000010862) #30 Hpcal1 (ENSMAUG00000010636) #32 Chinese hamster chok1gshd MODERN SPECIES 229 ENSCGRG00001019699 Smc6 (ENSCGRG00001024287) Vsnl1 (ENSCGRG00001017035) ENSCGRG00001012128 Cyria (ENSCGRG00001014064) Mycn (ENSCGRG00001018130) Ddx1 (ENSCGRG00001013025) Nbas (ENSCGRG00001001919) ENSCGRG00001002169 ENSCGRG00001013069 ENSCGRG00001013482 Trib2 (ENSCGRG00001024816) #18 Lpin1 (ENSCGRG00001000692) #19 Ntsr2 (ENSCGRG00001012327) #20 Greb1 (ENSCGRG00001018970) #21 E2f6 (ENSCGRG00001013963) #22 Rock2 (ENSCGRG00001016725) #23 Pqlc3 (ENSCGRG00001018327) #24 2410004P03Rik (ENSCGRG00001003389) Kcnf1 (ENSCGRG00001014274) #26 Pdia6 (ENSCGRG00001017472) #27 Atp6v1c2 (ENSCGRG00001021615) #29 Nol10 (ENSCGRG00001009928) #30 ENSCGRG00001015979 #31 Hpcal1 (ENSCGRG00001023170) #32 Rrm2 (ENSCGRG00001007841) #33 Cys1 (ENSCGRG00001013951) Klf11 (ENSCGRG00001018478) #34 Grhl1 (ENSCGRG00001024970) #35 ENSCGRG00001018516 #36 Ywhaq (ENSCGRG00001024724) #37 Cricetidae_B ANCESTRAL SPECIES 43 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.bb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a.v #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Northern American deer mouse MODERN SPECIES 14 Gen1 (ENSPEMG00000001855) ENSPEMG00000024461 Vsnl1 (ENSPEMG00000028838) ENSPEMG00000027568 Cyria (ENSPEMG00000025578) Mycn (ENSPEMG00000014767) ENSPEMG00000027724 Ddx1 (ENSPEMG00000016389) Nbas (ENSPEMG00000000126) Lratd1 (ENSPEMG00000027364) ENSPEMG00000030202 Trib2 (ENSPEMG00000027972) #18 Lpin1 (ENSPEMG00000005628) #19 Ntsr2 (ENSPEMG00000007290) #20 Greb1 (ENSPEMG00000020144) #21 E2f6 (ENSPEMG00000020192) #22 Rock2 (ENSPEMG00000020257) #23 Pqlc3 (ENSPEMG00000020282) #24 ENSPEMG00000025861 #25 Kcnf1 (ENSPEMG00000013250) #26 Pdia6 (ENSPEMG00000002821) #27 Atp6v1c2 (ENSPEMG00000007660) #29 Nol10 (ENSPEMG00000008676) #30 Hpcal1 (ENSPEMG00000025119) #32 Rrm2 (ENSPEMG00000010359) #33 Cys1 (ENSPEMG00000025881) Klf11 (ENSPEMG00000011311) #34 Grhl1 (ENSPEMG00000012157) #35 Taf1b (ENSPEMG00000013642) #36 ENSPEMG00000027877 ##37 Adam17 (ENSPEMG00000015840) Prairie vole DUPLICATION Prairie vole MODERN SPECIES 93 Smc6 (ENSMOCG00000009440) Vsnl1 (ENSMOCG00000000359) Rad51ap2 (ENSMOCG00000012235) ENSMOCG00000002918 ENSMOCG00000004702 Cyria (ENSMOCG00000015524) Mycn (ENSMOCG00000012273) Ddx1 (ENSMOCG00000000257) Nbas (ENSMOCG00000009751) Lratd1 (ENSMOCG00000015863) Trib2 (ENSMOCG00000006314) #18 ENSMOCG00000002531 Lpin1 (ENSMOCG00000014921) #19 Ntsr2 (ENSMOCG00000005558) #20 Greb1 (ENSMOCG00000012442) #21 ENSMOCG00000019419 #22 Rock2 (ENSMOCG00000004291) #23 Pqlc3 (ENSMOCG00000020689) #24 2410004P03Rik (ENSMOCG00000005186) Kcnf1 (ENSMOCG00000002002) #26 Pdia6 (ENSMOCG00000014991) #27 Atp6v1c2 (ENSMOCG00000019580) #29 Nol10 (ENSMOCG00000021564) #30 ENSMOCG00000010314 #31 Hpcal1 (ENSMOCG00000014411) #32 ENSMOCG00000010909 #33 ENSMOCG00000018114 #33 Cys1 (ENSMOCG00000017656) ENSMOCG00000014995 #34 ENSMOCG00000003070 Grhl1 (ENSMOCG00000019210) #35 Prairie vole MODERN SPECIES Snx13 (ENSMOCG00000011768) ENSMOCG00000004201 Twist1 (ENSMOCG00000008957) Ferd3l (ENSMOCG00000006801) Polr1f (ENSMOCG00000003458) Efcab10 (ENSMOCG00000015759) Atxn7l1 (ENSMOCG00000001052) ENSMOCG00000008600 Cdhr3 (ENSMOCG00000012855) Sypl (ENSMOCG00000011672) Nampt (ENSMOCG00000007931) Pik3cg (ENSMOCG00000007687) Prkar2b (ENSMOCG00000013480) Hbp1 (ENSMOCG00000019227) Cog5 (ENSMOCG00000009102) ENSMOCG00000000934 #22 Gpr22 (ENSMOCG00000002304) ENSMOCG00000005050 Dus4l (ENSMOCG00000019344) Bcap29 (ENSMOCG00000002261) Slc26a4 (ENSMOCG00000022260) Cbll1 (ENSMOCG00000016689) Slc26a3 (ENSMOCG00000019595) Dld (ENSMOCG00000021009) Lamb1 (ENSMOCG00000014282) ENSMOCG00000017600 ENSMOCG00000019158 Cp (ENSMOCG00000016138) Hps3 (ENSMOCG00000010766) Hltf (ENSMOCG00000019747) Gyg (ENSMOCG00000013677) Laurasiatheria ANCESTRAL SPECIES 13 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Laurasiatheria_a ANCESTRAL SPECIES 17 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Laurasiatheria_b ANCESTRAL SPECIES 17 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Laurasiatheria_c ANCESTRAL SPECIES 14 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Equus ANCESTRAL SPECIES 7 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00910000146982 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT01090000263232 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Donkey MODERN SPECIES 26 MSGN1 (ENSEASG00005009364) GEN1 (ENSEASG00005023619) SMC6 (ENSEASG00005009355) VSNL1 (ENSEASG00005026430) RAD51AP2 (ENSEASG00005009350) CYRIA (ENSEASG00005009344) MYCN (ENSEASG00005037158) DDX1 (ENSEASG00005009335) NBAS (ENSEASG00005008385) LRATD1 (ENSEASG00005026394) ENSEASG00005008260 TRIB2 (ENSEASG00005008257) #18 LPIN1 (ENSEASG00005008245) #19 NTSR2 (ENSEASG00005008238) #20 GREB1 (ENSEASG00005008223) #21 E2F6 (ENSEASG00005008212) #22 ROCK2 (ENSEASG00005005236) #23 ENSEASG00005034683 #24 C2orf50 (ENSEASG00005004947) #25 KCNF1 (ENSEASG00005027361) #26 PDIA6 (ENSEASG00005004942) #27 ATP6V1C2 (ENSEASG00005004932) #29 NOL10 (ENSEASG00005004919) #30 ENSEASG00005004910 #31 HPCAL1 (ENSEASG00005004903) #32 RRM2 (ENSEASG00005004892) #33 CYS1 (ENSEASG00005025190) KLF11 (ENSEASG00005004881) #34 GRHL1 (ENSEASG00005028173) #35 TAF1B (ENSEASG00005004803) #36 YWHAQ (ENSEASG00005004792) #37 Horse MODERN SPECIES 6 RAD51AP2 (ENSECAG00000014706) CYRIA (ENSECAG00000014952) ENSECAG00000018361 MYCN (ENSECAG00000002896) ENSECAG00000037590 DDX1 (ENSECAG00000016396) NBAS (ENSECAG00000016641) LRATD1 (ENSECAG00000027835) ENSECAG00000007860 ENSECAG00000038530 ENSECAG00000050817 TRIB2 (ENSECAG00000010405) #18 LPIN1 (ENSECAG00000011239) #19 NTSR2 (ENSECAG00000016454) #20 GREB1 (ENSECAG00000018308) #21 E2F6 (ENSECAG00000023944) #22 ROCK2 (ENSECAG00000009872) #23 ENSECAG00000053488 SLC66A3 (ENSECAG00000020784) #24 C15H2orf50 (ENSECAG00000022456) #25 KCNF1 (ENSECAG00000002935) #26 PDIA6 (ENSECAG00000022717) #27 ATP6V1C2 (ENSECAG00000010555) #29 NOL10 (ENSECAG00000015177) #30 ODC1 (ENSECAG00000022690) #31 HPCAL1 (ENSECAG00000040270) #32 RRM2 (ENSECAG00000007464) #33 CYS1 (ENSECAG00000039359) KLF11 (ENSECAG00000015820) #34 GRHL1 (ENSECAG00000015969) #35 TAF1B (ENSECAG00000023244) #36 Chiroptera ANCESTRAL SPECIES 10 ENSGT00940000160181 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Megabat MODERN SPECIES 1118 GREB1 (ENSPVAG00000008656) #21 E2F6 (ENSPVAG00000008652) #22 ROCK2 (ENSPVAG00000008634) #23 SLC66A3 (ENSPVAG00000008630) #24 ENSPVAG00000008626 Microchiroptera ANCESTRAL SPECIES 14 ENSGT00940000160181 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Greater horseshoe bat MODERN SPECIES 4 KCNS3 (ENSRFEG00010006076) MSGN1 (ENSRFEG00010006094) GEN1 (ENSRFEG00010006120) SMC6 (ENSRFEG00010006174) VSNL1 (ENSRFEG00010006243) RAD51AP2 (ENSRFEG00010006267) CYRIA (ENSRFEG00010006289) MYCN (ENSRFEG00010006325) DDX1 (ENSRFEG00010006410) NBAS (ENSRFEG00010006665) LRATD1 (ENSRFEG00010006783) ENSRFEG00010006807 TRIB2 (ENSRFEG00010006836) #18 LPIN1 (ENSRFEG00010006930) #19 GREB1 (ENSRFEG00010007141) #21 E2F6 (ENSRFEG00010007627) #22 ROCK2 (ENSRFEG00010007837) #23 SLC66A3 (ENSRFEG00010008070) #24 C2orf50 (ENSRFEG00010008148) #25 KCNF1 (ENSRFEG00010008182) #26 PDIA6 (ENSRFEG00010008218) #27 ATP6V1C2 (ENSRFEG00010008402) #29 NOL10 (ENSRFEG00010008527) #30 ODC1 (ENSRFEG00010008653) #31 HPCAL1 (ENSRFEG00010008686) #32 ENSRFEG00010008723 #33 CYS1 (ENSRFEG00010008838) KLF11 (ENSRFEG00010008867) #34 GRHL1 (ENSRFEG00010008922) #35 ENSRFEG00010009191 TAF1B (ENSRFEG00010009242) #36 Microbat DUPLICATION Microbat MODERN SPECIES 958 LIMS1 (ENSMLUG00000028983) ENSMLUG00000027119 GCC2 (ENSMLUG00000000182) ENSMLUG00000026848 ACAD9 (ENSMLUG00000017155) IQSEC1 (ENSMLUG00000001338) NUP210 (ENSMLUG00000008874) HDAC11 (ENSMLUG00000017293) FBLN2 (ENSMLUG00000007277) WNT7A (ENSMLUG00000015639) GK5 (ENSMLUG00000022492) XRN1 (ENSMLUG00000016885) ATR (ENSMLUG00000016908) PLS1 (ENSMLUG00000006680) TRPC1 (ENSMLUG00000014535) ENSMLUG00000029109 #22 PCOLCE2 (ENSMLUG00000008514) PAQR9 (ENSMLUG00000002919) ENSMLUG00000002920 CHST2 (ENSMLUG00000017249) ENSMLUG00000006765 SLC9A9 (ENSMLUG00000014324) ENSMLUG00000029377 DIPK2A (ENSMLUG00000002662) Microbat MODERN SPECIES 1345 GREB1 (ENSMLUG00000000221) #21 ENSMLUG00000003384 #22 ROCK2 (ENSMLUG00000015664) #23 SLC66A3 (ENSMLUG00000015653) #24 PDIA6 (ENSMLUG00000012215) #27 ATP6V1C2 (ENSMLUG00000012207) #29 NOL10 (ENSMLUG00000012309) #30 ENSMLUG00000010423 #31 RRM2 (ENSMLUG00000010596) #33 KLF11 (ENSMLUG00000002295) #34 GRHL1 (ENSMLUG00000002290) #35 TAF1B (ENSMLUG00000002273) #36 YWHAQ (ENSMLUG00000005383) #37 ADAM17 (ENSMLUG00000010676) IAH1 (ENSMLUG00000010667) CPSF3 (ENSMLUG00000010636) ITGB1BP1 (ENSMLUG00000010629) Carnivora ANCESTRAL SPECIES 19 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Felidae ANCESTRAL SPECIES 3 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Panthera ANCESTRAL SPECIES 2 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Panthera_a ANCESTRAL SPECIES 1 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 leopard MODERN SPECIES KCNS3 (ENSPPRG00000020060) ENSPPRG00000020962 MSGN1 (ENSPPRG00000020043) GEN1 (ENSPPRG00000020921) SMC6 (ENSPPRG00000020812) VSNL1 (ENSPPRG00000020771) RAD51AP2 (ENSPPRG00000020727) CYRIA (ENSPPRG00000020692) MYCN (ENSPPRG00000020616) DDX1 (ENSPPRG00000020556) NBAS (ENSPPRG00000020146) LRATD1 (ENSPPRG00000020023) TRIB2 (ENSPPRG00000019893) #18 LPIN1 (ENSPPRG00000019764) #19 GREB1 (ENSPPRG00000019270) #21 E2F6 (ENSPPRG00000018702) #22 ROCK2 (ENSPPRG00000018610) #23 SLC66A3 (ENSPPRG00000018314) #24 C2orf50 (ENSPPRG00000018217) #25 KCNF1 (ENSPPRG00000020006) #26 PDIA6 (ENSPPRG00000018159) #27 ATP6V1C2 (ENSPPRG00000018018) #29 NOL10 (ENSPPRG00000017868) #30 ODC1 (ENSPPRG00000017534) #31 HPCAL1 (ENSPPRG00000017486) #32 ENSPPRG00000017433 #32 RRM2 (ENSPPRG00000017387) #33 KLF11 (ENSPPRG00000017354) #34 GRHL1 (ENSPPRG00000017279) #35 TAF1B (ENSPPRG00000017125) #36 YWHAQ (ENSPPRG00000017069) #37 lion MODERN SPECIES 3 MSGN1 (ENSPLOG00000004343) GEN1 (ENSPLOG00000004334) SMC6 (ENSPLOG00000004301) VSNL1 (ENSPLOG00000004292) RAD51AP2 (ENSPLOG00000004282) CYRIA (ENSPLOG00000004262) ENSPLOG00000004254 MYCN (ENSPLOG00000004251) DDX1 (ENSPLOG00000004218) NBAS (ENSPLOG00000004024) LRATD1 (ENSPLOG00000003961) TRIB2 (ENSPLOG00000003954) #18 LPIN1 (ENSPLOG00000003864) #19 ENSPLOG00000003731 GREB1 (ENSPLOG00000003614) #21 E2F6 (ENSPLOG00000003470) #22 ROCK2 (ENSPLOG00000003439) #23 SLC66A3 (ENSPLOG00000003412) #24 C2orf50 (ENSPLOG00000003392) #25 KCNF1 (ENSPLOG00000003383) #26 PDIA6 (ENSPLOG00000003350) #27 ATP6V1C2 (ENSPLOG00000003251) #29 NOL10 (ENSPLOG00000003174) #30 ODC1 (ENSPLOG00000003104) #31 HPCAL1 (ENSPLOG00000003090) #32 RRM2 (ENSPLOG00000003069) #33 CYS1 (ENSPLOG00000003056) KLF11 (ENSPLOG00000003042) #34 GRHL1 (ENSPLOG00000002984) #35 TAF1B (ENSPLOG00000002921) #36 ENSPLOG00000002895 Tiger MODERN SPECIES 148 LPIN1 (ENSPTIG00000013089) #19 ENSPTIG00000013027 #21 ENSPTIG00000012980 #21 E2F6 (ENSPTIG00000012937) #22 ROCK2 (ENSPTIG00000012860) #23 ENSPTIG00000012846 #24 C2orf50 (ENSPTIG00000012798) #25 PDIA6 (ENSPTIG00000012679) #27 ATP6V1C2 (ENSPTIG00000012594) #29 NOL10 (ENSPTIG00000012456) #30 Cat MODERN SPECIES 2 KCNS3 (ENSFCAG00000014253) MSGN1 (ENSFCAG00000045777) GEN1 (ENSFCAG00000013581) SMC6 (ENSFCAG00000013578) VSNL1 (ENSFCAG00000023416) RAD51AP2 (ENSFCAG00000028900) CYRIA (ENSFCAG00000004125) MYCN (ENSFCAG00000043374) ENSFCAG00000048673 DDX1 (ENSFCAG00000004680) NBAS (ENSFCAG00000004675) LRATD1 (ENSFCAG00000030598) TRIB2 (ENSFCAG00000035828) #18 LPIN1 (ENSFCAG00000008518) #19 GREB1 (ENSFCAG00000008510) #21 E2F6 (ENSFCAG00000011952) #22 ROCK2 (ENSFCAG00000024216) #23 SLC66A3 (ENSFCAG00000014335) #24 CA3H2orf50 (ENSFCAG00000044685) #25 KCNF1 (ENSFCAG00000031035) #26 PDIA6 (ENSFCAG00000009258) #27 ATP6V1C2 (ENSFCAG00000009257) #29 NOL10 (ENSFCAG00000009255) #30 ODC1 (ENSFCAG00000027500) #31 HPCAL1 (ENSFCAG00000009252) #32 RRM2 (ENSFCAG00000003942) #33 CYS1 (ENSFCAG00000045113) KLF11 (ENSFCAG00000030965) #34 GRHL1 (ENSFCAG00000007856) #35 TAF1B (ENSFCAG00000007855) #36 YWHAQ (ENSFCAG00000007854) ##37 Caniformia ANCESTRAL SPECIES 18 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Caniformia_b ANCESTRAL SPECIES 11 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Mustelinae ANCESTRAL SPECIES 55 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Ferret MODERN SPECIES 178 RAD51AP2 (ENSMPUG00000013634) ENSMPUG00000013627 CYRIA (ENSMPUG00000013624) ENSMPUG00000013621 ENSMPUG00000013620 DDX1 (ENSMPUG00000013606) NBAS (ENSMPUG00000013588) ENSMPUG00000013586 ENSMPUG00000013584 LRATD1 (ENSMPUG00000019483) ENSMPUG00000019482 TRIB2 (ENSMPUG00000013582) #18 LPIN1 (ENSMPUG00000013577) #19 NTSR2 (ENSMPUG00000013574) #20 GREB1 (ENSMPUG00000013561) #21 E2F6 (ENSMPUG00000013559) #22 ROCK2 (ENSMPUG00000013549) #23 SLC66A3 (ENSMPUG00000013545) #24 C2orf50 (ENSMPUG00000013541) #25 ENSMPUG00000013537 KCNF1 (ENSMPUG00000019481) #26 PDIA6 (ENSMPUG00000013530) #27 ENSMPUG00000019480 ATP6V1C2 (ENSMPUG00000013450) #29 NOL10 (ENSMPUG00000013325) #30 ODC1 (ENSMPUG00000013321) #31 HPCAL1 (ENSMPUG00000013302) #32 RRM2 (ENSMPUG00000013295) #33 KLF11 (ENSMPUG00000013287) #34 ENSMPUG00000013281 ENSMPUG00000013277 American mink MODERN SPECIES 7 MSGN1 (ENSNVIG00000013513) GEN1 (ENSNVIG00000013515) ENSNVIG00000013543 VSNL1 (ENSNVIG00000013664) RAD51AP2 (ENSNVIG00000013682) CYRIA (ENSNVIG00000013712) MYCN (ENSNVIG00000013755) ENSNVIG00000013771 DDX1 (ENSNVIG00000013794) NBAS (ENSNVIG00000013960) LRATD1 (ENSNVIG00000014024) TRIB2 (ENSNVIG00000014034) #18 LPIN1 (ENSNVIG00000014063) #19 NTSR2 (ENSNVIG00000014146) #20 GREB1 (ENSNVIG00000014163) #21 E2F6 (ENSNVIG00000014248) #22 ROCK2 (ENSNVIG00000014361) #23 SLC66A3 (ENSNVIG00000014450) #24 C2orf50 (ENSNVIG00000014464) #25 KCNF1 (ENSNVIG00000014487) #26 PDIA6 (ENSNVIG00000014505) #27 ATP6V1C2 (ENSNVIG00000014715) #29 NOL10 (ENSNVIG00000014778) #30 DCOR (ENSNVIG00000014941) #31 ENSNVIG00000014964 RRM2 (ENSNVIG00000014985) #33 KLF11 (ENSNVIG00000015016) #34 GRHL1 (ENSNVIG00000015046) #35 TAF1B (ENSNVIG00000015127) #36 YWHAQ (ENSNVIG00000015162) #37 ADAM17 (ENSNVIG00000015197) Ursidae ANCESTRAL SPECIES 9 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Giant Panda MODERN SPECIES 14 RAD51AP2 (ENSAMEG00000002644) ENSAMEG00000002627 CYRIA (ENSAMEG00000001040) ENSAMEG00000023555 ENSAMEG00000001062 ENSAMEG00000029970 DDX1 (ENSAMEG00000001071) NBAS (ENSAMEG00000010210) ENSAMEG00000030828 LRATD1 (ENSAMEG00000028918) ENSAMEG00000024142 TRIB2 (ENSAMEG00000012759) #18 LPIN1 (ENSAMEG00000012767) #19 NTSR2 (ENSAMEG00000012823) #20 GREB1 (ENSAMEG00000012841) #21 E2F6 (ENSAMEG00000011667) #22 ROCK2 (ENSAMEG00000011596) #23 ENSAMEG00000026567 SLC66A3 (ENSAMEG00000011583) #24 C2orf50 (ENSAMEG00000011580) #25 KCNF1 (ENSAMEG00000019267) #26 ENSAMEG00000011555 #27 ATP6V1C2 (ENSAMEG00000011506) #29 NOL10 (ENSAMEG00000011438) #30 ODC1 (ENSAMEG00000011415) #31 HPCAL1 (ENSAMEG00000029791) #32 RRM2 (ENSAMEG00000011372) #33 KLF11 (ENSAMEG00000011355) #34 GRHL1 (ENSAMEG00000011320) #35 TAF1B (ENSAMEG00000011301) #36 YWHAQ (ENSAMEG00000008618) #37 Ursus ANCESTRAL SPECIES 125 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Polar bear MODERN SPECIES 89 TRIB2 (ENSUMAG00000002335) #18 LPIN1 (ENSUMAG00000002345) #19 GREB1 (ENSUMAG00000002360) #21 E2F6 (ENSUMAG00000002414) #22 ROCK2 (ENSUMAG00000002537) #23 SLC66A3 (ENSUMAG00000003286) #24 C2orf50 (ENSUMAG00000003297) #25 KCNF1 (ENSUMAG00000003301) #26 PDIA6 (ENSUMAG00000003308) #27 ATP6V1C2 (ENSUMAG00000003318) #29 NOL10 (ENSUMAG00000003385) #30 ODC1 (ENSUMAG00000003406) #31 HPCAL1 (ENSUMAG00000003415) #32 RRM2 (ENSUMAG00000003431) #33 KLF11 (ENSUMAG00000003481) #34 GRHL1 (ENSUMAG00000003494) #35 TAF1B (ENSUMAG00000003559) #36 YWHAQ (ENSUMAG00000003646) #37 ADAM17 (ENSUMAG00000003653) American black bear DUPLICATION American black bear MODERN SPECIES 1252 ENSUAMG00000010611 #22 American black bear MODERN SPECIES 923 ENSUAMG00000013941 #22 ROCK2 (ENSUAMG00000014156) #23 SLC66A3 (ENSUAMG00000019449) #24 C2orf50 (ENSUAMG00000019450) #25 KCNF1 (ENSUAMG00000019451) #26 Canidae ANCESTRAL SPECIES 46 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000154502.u.b ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Canis_lupus ANCESTRAL SPECIES 10 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000154502.u.b ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Dog MODERN SPECIES 8 SMC6 (ENSCAFG00845016537) VSNL1 (ENSCAFG00845016286) RAD51AP2 (ENSCAFG00845016237) CYRIA (ENSCAFG00845016166) MYCN (ENSCAFG00845016124) ENSCAFG00845016099 ENSCAFG00845016086 DDX1 (ENSCAFG00845015852) NBAS (ENSCAFG00845029355) LRATD1 (ENSCAFG00845029228) ENSCAFG00845029183 TRIB2 (ENSCAFG00845029138) #18 LPIN1 (ENSCAFG00845028736) #19 NTSR2 (ENSCAFG00845028451) #20 GREB1 (ENSCAFG00845028242) #21 E2F6 (ENSCAFG00845028092) #22 ROCK2 (ENSCAFG00845027461) #23 SLC66A3 (ENSCAFG00845027286) #24 C2orf50 (ENSCAFG00845027230) #25 KCNF1 (ENSCAFG00845027200) #26 PDIA6 (ENSCAFG00845026954) #27 ATP6V1C2 (ENSCAFG00845026644) #29 NOL10 (ENSCAFG00845026340) #30 ODC1 (ENSCAFG00845026175) #31 HPCAL1 (ENSCAFG00845026130) #32 RRM2 (ENSCAFG00845025952) #33 CYS1 (ENSCAFG00845025907) KLF11 (ENSCAFG00845025845) #34 GRHL1 (ENSCAFG00845025614) #35 TAF1B (ENSCAFG00845025510) #36 YWHAQ (ENSCAFG00845025457) #37 Dingo MODERN SPECIES 223 ENSCAFG00020026047 VSNL1 (ENSCAFG00020026051) RAD51AP2 (ENSCAFG00020026058) CYRIA (ENSCAFG00020026065) MYCN (ENSCAFG00020026072) ENSCAFG00020026073 ENSCAFG00020026076 ENSCAFG00020026077 DDX1 (ENSCAFG00020026083) NBAS (ENSCAFG00020026147) LRATD1 (ENSCAFG00020026306) TRIB2 (ENSCAFG00020026310) #18 LPIN1 (ENSCAFG00020026371) #19 NTSR2 (ENSCAFG00020026550) #20 GREB1 (ENSCAFG00020026552) #21 E2F6 (ENSCAFG00020026554) #22 ROCK2 (ENSCAFG00020026578) #23 SLC66A3 (ENSCAFG00020026709) #24 C2orf50 (ENSCAFG00020026711) #25 KCNF1 (ENSCAFG00020026713) #26 PDIA6 (ENSCAFG00020026714) #27 ATP6V1C2 (ENSCAFG00020026718) #29 NOL10 (ENSCAFG00020026722) #30 ODC1 (ENSCAFG00020026728) #31 HPCAL1 (ENSCAFG00020026737) #32 RRM2 (ENSCAFG00020026744) #33 CYS1 (ENSCAFG00020026758) KLF11 (ENSCAFG00020026763) #34 GRHL1 (ENSCAFG00020026767) #35 TAF1B (ENSCAFG00020026787) #36 YWHAQ (ENSCAFG00020026795) #37 Red fox MODERN SPECIES 76 TRIB2 (ENSVVUG00000000886) #18 LPIN1 (ENSVVUG00000000949) #19 NTSR2 (ENSVVUG00000001062) #20 GREB1 (ENSVVUG00000001085) #21 E2F6 (ENSVVUG00000001169) #22 ROCK2 (ENSVVUG00000001206) #23 PQLC3 (ENSVVUG00000001281) #24 CUNH2orf50 (ENSVVUG00000001296) #25 KCNF1 (ENSVVUG00000001317) #26 PDIA6 (ENSVVUG00000001332) #27 ATP6V1C2 (ENSVVUG00000001351) #29 NOL10 (ENSVVUG00000001394) #30 ENSVVUG00000001420 ODC1 (ENSVVUG00000001437) #31 HPCAL1 (ENSVVUG00000001457) #32 RRM2 (ENSVVUG00000001484) #33 KLF11 (ENSVVUG00000001585) #34 GRHL1 (ENSVVUG00000001610) #35 TAF1B (ENSVVUG00000001641) #36 YWHAQ (ENSVVUG00000002125) #37 Artiodactyla ANCESTRAL SPECIES 16 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Suina ANCESTRAL SPECIES 13 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Chacoan peccary MODERN SPECIES 776 KCNS3 (ENSCWAG00000016339) MSGN1 (ENSCWAG00000016325) GEN1 (ENSCWAG00000016234) SMC6 (ENSCWAG00000016171) VSNL1 (ENSCWAG00000016143) RAD51AP2 (ENSCWAG00000016094) CYRIA (ENSCWAG00000016027) MYCN (ENSCWAG00000015961) DDX1 (ENSCWAG00000015647) NBAS (ENSCWAG00000015265) LRATD1 (ENSCWAG00000015236) TRIB2 (ENSCWAG00000015191) #18 LPIN1 (ENSCWAG00000014537) #19 NTSR2 (ENSCWAG00000014475) #20 GREB1 (ENSCWAG00000014037) #21 E2F6 (ENSCWAG00000013986) #22 Pig MODERN SPECIES 11 GEN1 (ENSSSCG00000008613) SMC6 (ENSSSCG00000008614) VSNL1 (ENSSSCG00000008615) RAD51AP2 (ENSSSCG00000038058) CYRIA (ENSSSCG00000008617) ENSSSCG00000033084 MYCN (ENSSSCG00000008618) DDX1 (ENSSSCG00000008619) NBAS (ENSSSCG00000008621) LRATD1 (ENSSSCG00000008664) ENSSSCG00000042932 TRIB2 (ENSSSCG00000039080) #18 LPIN1 (ENSSSCG00000008624) #19 NTSR2 (ENSSSCG00000008625) #20 GREB1 (ENSSSCG00000025483) #21 E2F6 (ENSSSCG00000026161) #22 ROCK2 (ENSSSCG00000008629) #23 SLC66A3 (ENSSSCG00000008631) #24 KCNF1 (ENSSSCG00000033463) #26 PDIA6 (ENSSSCG00000008633) #27 ATP6V1C2 (ENSSSCG00000008634) #29 NOL10 (ENSSSCG00000008635) #30 ODC1 (ENSSSCG00000027121) #31 HPCAL1 (ENSSSCG00000003663) #32 ENSSSCG00000031741 #33 CYS1 (ENSSSCG00000040267) KLF11 (ENSSSCG00000038643) #34 GRHL1 (ENSSSCG00000026068) #35 TAF1B (ENSSSCG00000008637) #36 YWHAQ (ENSSSCG00000008638) ##37 ADAM17 (ENSSSCG00000008641) Artiodactyla_a ANCESTRAL SPECIES 15 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Camelidae ANCESTRAL SPECIES 12 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 ENSGT00390000008069 Arabian camel MODERN SPECIES 6 GEN1 (ENSCDRG00005004909) SMC6 (ENSCDRG00005004835) VSNL1 (ENSCDRG00005004814) RAD51AP2 (ENSCDRG00005004783) CYRIA (ENSCDRG00005004743) ENSCDRG00005004717 ENSCDRG00005004697 DDX1 (ENSCDRG00005004527) NBAS (ENSCDRG00005004285) LRATD1 (ENSCDRG00005004252) ENSCDRG00005004212 TRIB2 (ENSCDRG00005004180) #18 LPIN1 (ENSCDRG00005003875) #19 NTSR2 (ENSCDRG00005003795) #20 GREB1 (ENSCDRG00005003633) #21 E2F6 (ENSCDRG00005003569) #22 ROCK2 (ENSCDRG00005003503) #23 SLC66A3 (ENSCDRG00005003399) #24 C2orf50 (ENSCDRG00005003354) #25 PDIA6 (ENSCDRG00005021479) #27 ATP6V1C2 (ENSCDRG00005021467) #29 NOL10 (ENSCDRG00005021454) #30 ODC1 (ENSCDRG00005021445) #31 HPCAL1 (ENSCDRG00005021441) #32 RRM2 (ENSCDRG00005021436) #33 KLF11 (ENSCDRG00005021426) #34 GRHL1 (ENSCDRG00005021421) #35 TAF1B (ENSCDRG00005021414) #36 ENSCDRG00005021412 YWHAQ (ENSCDRG00005021407) #37 ADAM17 (ENSCDRG00005021400) Alpaca MODERN SPECIES 495 E2F6 (ENSVPAG00000003666) #22 ROCK2 (ENSVPAG00000003665) #23 Artiodactyla_b ANCESTRAL SPECIES 14 ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Cetacea ANCESTRAL SPECIES 16 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.db.b #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Blue whale MODERN SPECIES 4 CYRIA (ENSBMSG00010015112) MYCN (ENSBMSG00010015182) ENSBMSG00010015206 ENSBMSG00010015278 DDX1 (ENSBMSG00010015414) NBAS (ENSBMSG00010015769) LRATD1 (ENSBMSG00010015823) ENSBMSG00010015831 ENSBMSG00010015848 TRIB2 (ENSBMSG00010015872) #18 ENSBMSG00010015898 LPIN1 (ENSBMSG00010015983) #19 NTSR2 (ENSBMSG00010016552) #20 ENSBMSG00010016732 #21 ENSBMSG00010016772 E2F6 (ENSBMSG00010016797) #22 ROCK2 (ENSBMSG00010016865) #23 ENSBMSG00010017126 SLC66A3 (ENSBMSG00010017158) #24 C2orf50 (ENSBMSG00010017406) #25 KCNF1 (ENSBMSG00010017441) #26 PDIA6 (ENSBMSG00010017505) #27 ATP6V1C2 (ENSBMSG00010017714) #29 NOL10 (ENSBMSG00010018130) #30 ENSBMSG00010018302 #31 HPCAL1 (ENSBMSG00010018376) #32 ENSBMSG00010018397 RRM2 (ENSBMSG00010018407) #33 CYS1 (ENSBMSG00010018428) KLF11 (ENSBMSG00010018472) #34 ENSBMSG00010018599 #35 Odontoceti ANCESTRAL SPECIES 15 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.db.b #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Sperm whale MODERN SPECIES 1086 E2F6 (ENSPCTG00005013750) #22 Odontoceti_a ANCESTRAL SPECIES 12 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.db.b #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Dolphin MODERN SPECIES 3561 LPIN1 (ENSTTRG00000013171) #19 NTSR2 (ENSTTRG00000013170) #20 GREB1 (ENSTTRG00000013169) #21 E2F6 (ENSTTRG00000013168) #22 ROCK2 (ENSTTRG00000013165) #23 PQLC3 (ENSTTRG00000013164) #24 ENSTTRG00000013163 KCNF1 (ENSTTRG00000013162) #26 PDIA6 (ENSTTRG00000013160) #27 ATP6V1C2 (ENSTTRG00000013159) #29 NOL10 (ENSTTRG00000013158) #30 Odontoceti_b ANCESTRAL SPECIES 15 ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00950000185985 ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00390000012178.g.b.a.b.b ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.db.b #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Monodontidae ANCESTRAL SPECIES 13 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00950000185177 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00390000012178.g.b.a.b.b ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.db.b #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 ENSGT00940000155443 Narwhal MODERN SPECIES 305 CYRIA (ENSMMNG00015005774) ENSMMNG00015005789 ENSMMNG00015005798 ENSMMNG00015005811 ENSMMNG00015005828 DDX1 (ENSMMNG00015005859) NBAS (ENSMMNG00015005986) LRATD1 (ENSMMNG00015006182) ENSMMNG00015006201 TRIB2 (ENSMMNG00015006221) #18 ENSMMNG00015006235 LPIN1 (ENSMMNG00015006305) #19 NTSR2 (ENSMMNG00015006444) #20 GREB1 (ENSMMNG00015006496) #21 ENSMMNG00015006580 E2F6 (ENSMMNG00015006595) #22 ROCK2 (ENSMMNG00015006633) #23 ENSMMNG00015006662 SLC66A3 (ENSMMNG00015006697) #24 KCNF1 (ENSMMNG00015006742) #26 PDIA6 (ENSMMNG00015006773) #27 ATP6V1C2 (ENSMMNG00015006876) #29 NOL10 (ENSMMNG00015006937) #30 ENSMMNG00015006983 #31 HPCAL1 (ENSMMNG00015007009) #32 ENSMMNG00015007031 #33 CYS1 (ENSMMNG00015007058) KLF11 (ENSMMNG00015007075) #34 GRHL1 (ENSMMNG00015007097) #35 TAF1B (ENSMMNG00015007142) #36 YWHAQ (ENSMMNG00015007193) #37 Beluga whale MODERN SPECIES 37 RAD51AP2 (ENSDLEG00000003910) FAM49A (ENSDLEG00000003918) MYCN (ENSDLEG00000003931) ENSDLEG00000003941 ENSDLEG00000003947 DDX1 (ENSDLEG00000004022) NBAS (ENSDLEG00000004320) FAM84A (ENSDLEG00000004385) ENSDLEG00000004388 ENSDLEG00000004393 TRIB2 (ENSDLEG00000004400) #18 ENSDLEG00000004406 LPIN1 (ENSDLEG00000004420) #19 NTSR2 (ENSDLEG00000004495) #20 GREB1 (ENSDLEG00000004506) #21 E2F6 (ENSDLEG00000004522) #22 ENSDLEG00000004536 #23 ENSDLEG00000004551 ENSDLEG00000004566 #23 PQLC3 (ENSDLEG00000004589) #24 KCNF1 (ENSDLEG00000004602) #26 PDIA6 (ENSDLEG00000004606) #27 ATP6V1C2 (ENSDLEG00000004632) #29 NOL10 (ENSDLEG00000004668) #30 ODC1 (ENSDLEG00000004685) #31 HPCAL1 (ENSDLEG00000004713) #32 ENSDLEG00000004724 #33 CYS1 (ENSDLEG00000004756) KLF11 (ENSDLEG00000004778) #34 GRHL1 (ENSDLEG00000004790) #35 TAF1B (ENSDLEG00000004806) #36 Vaquita MODERN SPECIES 4 CYRIA (ENSPSNG00000005208) ENSPSNG00000005190 MYCN (ENSPSNG00000005177) ENSPSNG00000005167 DDX1 (ENSPSNG00000005062) NBAS (ENSPSNG00000004987) LRATD1 (ENSPSNG00000004919) ENSPSNG00000004906 ENSPSNG00000004892 TRIB2 (ENSPSNG00000004874) #18 ENSPSNG00000004854 LPIN1 (ENSPSNG00000004678) #19 NTSR2 (ENSPSNG00000004561) #20 ENSPSNG00000004458 #21 ENSPSNG00000004435 E2F6 (ENSPSNG00000004405) #22 ROCK2 (ENSPSNG00000004347) #23 SLC66A3 (ENSPSNG00000004284) #24 KCNF1 (ENSPSNG00000022584) #26 PDIA6 (ENSPSNG00000022580) #27 ATP6V1C2 (ENSPSNG00000022577) #29 NOL10 (ENSPSNG00000022572) #30 ENSPSNG00000022567 #31 HPCAL1 (ENSPSNG00000022565) #32 ENSPSNG00000022562 #33 CYS1 (ENSPSNG00000022560) KLF11 (ENSPSNG00000022558) #34 GRHL1 (ENSPSNG00000022556) #35 TAF1B (ENSPSNG00000022554) #36 YWHAQ (ENSPSNG00000022551) #37 ADAM17 (ENSPSNG00000022548) Pecora ANCESTRAL SPECIES 5 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 2 KCNS3 (ENSCHYG00000007031) MSGN1 (ENSCHYG00000007045) GEN1 (ENSCHYG00000007066) SMC6 (ENSCHYG00000007159) VSNL1 (ENSCHYG00000007343) RAD51AP2 (ENSCHYG00000007371) CYRIA (ENSCHYG00000007408) ENSCHYG00000007479 DDX1 (ENSCHYG00000007524) NBAS (ENSCHYG00000007960) LRATD1 (ENSCHYG00000008068) TRIB2 (ENSCHYG00000008145) #18 LPIN1 (ENSCHYG00000008194) #19 NTSR2 (ENSCHYG00000008520) #20 GREB1 (ENSCHYG00000008543) #21 ENSCHYG00000008703 #22 ROCK2 (ENSCHYG00000008822) #23 ENSCHYG00000009170 SLC66A3 (ENSCHYG00000009293) #24 C2orf50 (ENSCHYG00000009330) #25 KCNF1 (ENSCHYG00000009374) #26 PDIA6 (ENSCHYG00000009406) #27 ATP6V1C2 (ENSCHYG00000009711) #29 NOL10 (ENSCHYG00000010137) #30 ENSCHYG00000011027 #31 HPCAL1 (ENSCHYG00000011179) #32 ENSCHYG00000011216 ENSCHYG00000011258 #33 KLF11 (ENSCHYG00000011297) #34 GRHL1 (ENSCHYG00000011321) #35 TAF1B (ENSCHYG00000011467) #36 Yarkand deer MODERN SPECIES 1323 EGFL6 (ENSCHYG00000023766) TCEANC (ENSCHYG00000023727) RAB9A (ENSCHYG00000023718) ENSCHYG00000023673 OFD1 (ENSCHYG00000023561) GPM6B (ENSCHYG00000023125) GEMIN8 (ENSCHYG00000023096) ENSCHYG00000023086 ENSCHYG00000023075 GLRA2 (ENSCHYG00000022919) FANCB (ENSCHYG00000022845) MOSPD2 (ENSCHYG00000022624) ASB9 (ENSCHYG00000022451) ASB11 (ENSCHYG00000022074) PIGA (ENSCHYG00000021776) ENSCHYG00000021725 #22 PIR (ENSCHYG00000021541) BMX (ENSCHYG00000021205) ACE2 (ENSCHYG00000020844) ENSCHYG00000020684 ENSCHYG00000020647 ENSCHYG00000020589 ENSCHYG00000020523 AP1S2 (ENSCHYG00000019973) GRPR (ENSCHYG00000019874) ENSCHYG00000019847 S100G (ENSCHYG00000019799) CTPS2 (ENSCHYG00000019258) TXLNG (ENSCHYG00000019015) RBBP7 (ENSCHYG00000018713) RAI2 (ENSCHYG00000018670) Yarkand deer MODERN SPECIES 1323 BCOR (ENSCHYG00000023328) ENSCHYG00000023432 MID1IP1 (ENSCHYG00000023473) TSPAN7 (ENSCHYG00000023486) ENSCHYG00000023583 OTC (ENSCHYG00000023594) ENSCHYG00000023658 SYTL5 (ENSCHYG00000024135) ENSCHYG00000024198 DYNLT3 (ENSCHYG00000024212) CYBB (ENSCHYG00000024252) LANCL3 (ENSCHYG00000024391) ENSCHYG00000024427 ENSCHYG00000024437 PRRG1 (ENSCHYG00000024453) ENSCHYG00000024484 #22 ENSCHYG00000024508 ENSCHYG00000024517 ENSCHYG00000024537 ENSCHYG00000024561 ENSCHYG00000024760 ENSCHYG00000024784 ENSCHYG00000024803 ENSCHYG00000024831 ENSCHYG00000024844 ENSCHYG00000024865 ENSCHYG00000024874 ENSCHYG00000024884 ENSCHYG00000024891 DMD (ENSCHYG00000025075) ENSCHYG00000017141 Percora_a ANCESTRAL SPECIES 13 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Bovidae ANCESTRAL SPECIES 5 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Bovinae ANCESTRAL SPECIES 4 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00990000203553.c.b.o.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 American bison MODERN SPECIES 3221 CYRIA (ENSBBBG00000024980) ENSBBBG00000024994 DDX1 (ENSBBBG00000025299) NBAS (ENSBBBG00000008267) LRATD1 (ENSBBBG00000025504) TRIB2 (ENSBBBG00000011404) #18 LPIN1 (ENSBBBG00000002110) #19 GREB1 (ENSBBBG00000011590) #21 E2F6 (ENSBBBG00000011607) #22 ENSBBBG00000011612 ROCK2 (ENSBBBG00000011669) #23 SLC66A3 (ENSBBBG00000011693) #24 C2orf50 (ENSBBBG00000011703) #25 KCNF1 (ENSBBBG00000002161) #26 ENSBBBG00000011712 ENSBBBG00000011729 #27 ATP6V1C2 (ENSBBBG00000011779) #29 NOL10 (ENSBBBG00000002209) #30 ODC1 (ENSBBBG00000011893) #31 HPCAL1 (ENSBBBG00000007122) #32 RRM2 (ENSBBBG00000011911) #33 KLF11 (ENSBBBG00000011923) #34 GRHL1 (ENSBBBG00000011949) #35 TAF1B (ENSBBBG00000011961) #36 Bos ANCESTRAL SPECIES 5 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000203553.c.b.o.b ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646.c #27 ENSGT00390000004263.b #29 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Bos_b ANCESTRAL SPECIES 16 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000203553.c.b.o.b ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646.c #27 ENSGT00390000004263.b #29 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Hybrid Bos Indicus MODERN SPECIES 2 GEN1 (ENSBIXG00005024882) SMC6 (ENSBIXG00005004235) VSNL1 (ENSBIXG00005024708) RAD51AP2 (ENSBIXG00005024673) CYRIA (ENSBIXG00005024640) MYCN (ENSBIXG00005024578) DDX1 (ENSBIXG00005024527) NBAS (ENSBIXG00005007735) LRATD1 (ENSBIXG00005024161) TRIB2 (ENSBIXG00005024058) #18 LPIN1 (ENSBIXG00005023863) #19 NTSR2 (ENSBIXG00005004030) #20 GREB1 (ENSBIXG00005023461) #21 ENSBIXG00005022741 ENSBIXG00005003893 E2F6 (ENSBIXG00005022718) #22 ENSBIXG00005022696 ROCK2 (ENSBIXG00005022677) #23 ENSBIXG00005022563 SLC66A3 (ENSBIXG00005022531) #24 C2orf50 (ENSBIXG00005022500) #25 KCNF1 (ENSBIXG00005022457) #26 ENSBIXG00005007689 #27 ENSBIXG00005007375 #29 ENSBIXG00005022288 NOL10 (ENSBIXG00005022242) #30 ENSBIXG00005022099 #31 HPCAL1 (ENSBIXG00005006887) #32 RRM2 (ENSBIXG00005022029) #33 ENSBIXG00005003712 KLF11 (ENSBIXG00005021989) #34 Cow MODERN SPECIES 2 BET1L (ENSBTAG00000001744) RIC8A (ENSBTAG00000002042) SIRT3 (ENSBTAG00000002044) PSMD13 (ENSBTAG00000002045) COX8B (ENSBTAG00000002046) NLRP6 (ENSBTAG00000001076) PGGHG (ENSBTAG00000016722) IFITM5 (ENSBTAG00000020575) ENSBTAG00000019018 LRATD1 (ENSBTAG00000004948) ENSBTAG00000019284 TRIB2 (ENSBTAG00000016045) #18 LPIN1 (ENSBTAG00000007689) #19 NTSR2 (ENSBTAG00000003691) #20 GREB1 (ENSBTAG00000015402) #21 E2F6 (ENSBTAG00000048286) #22 ROCK2 (ENSBTAG00000005847) #23 ENSBTAG00000048065 SLC66A3 (ENSBTAG00000020297) #24 C11H2orf50 (ENSBTAG00000001903) #25 KCNF1 (ENSBTAG00000021283) #26 PDIA6 (ENSBTAG00000001928) #27 ATP6V1C2 (ENSBTAG00000001927) #29 NOL10 (ENSBTAG00000002716) #30 ODC1 (ENSBTAG00000004256) #31 HPCAL1 (ENSBTAG00000004259) #32 RRM2 (ENSBTAG00000008216) #33 CYS1 (ENSBTAG00000052669) KLF11 (ENSBTAG00000046218) #34 GRHL1 (ENSBTAG00000007485) #35 TAF1B (ENSBTAG00000007543) #36 Bos_a ANCESTRAL SPECIES 6 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00990000203553.c.b.o.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646.c #27 ENSGT00390000004263.b #29 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 Wild yak MODERN SPECIES 496 E2F6 (ENSBMUG00000017940) #22 ROCK2 (ENSBMUG00000017990) #23 ENSBMUG00000018037 SLC66A3 (ENSBMUG00000018094) #24 C2orf50 (ENSBMUG00000018120) #25 KCNF1 (ENSBMUG00000018144) #26 ENSBMUG00000018197 #27 ENSBMUG00000018266 #29 NOL10 (ENSBMUG00000018376) #30 Domestic yak DUPLICATION Domestic yak MODERN SPECIES 28 KCNS3 (ENSBGRG00000022008) MSGN1 (ENSBGRG00000022021) GEN1 (ENSBGRG00000022034) SMC6 (ENSBGRG00000022073) VSNL1 (ENSBGRG00000022276) RAD51AP2 (ENSBGRG00000022307) CYRIA (ENSBGRG00000022323) ENSBGRG00000022487 DDX1 (ENSBGRG00000022559) NBAS (ENSBGRG00000022914) LRATD1 (ENSBGRG00000023277) TRIB2 (ENSBGRG00000023292) #18 LPIN1 (ENSBGRG00000023367) #19 NTSR2 (ENSBGRG00000023894) #20 GREB1 (ENSBGRG00000023941) #21 E2F6 (ENSBGRG00000024251) #22 ROCK2 (ENSBGRG00000024309) #23 ENSBGRG00000024544 ENSBGRG00000024588 #24 C2orf50 (ENSBGRG00000024690) #25 KCNF1 (ENSBGRG00000024709) #26 ENSBGRG00000024734 #27 ENSBGRG00000024848 #29 ENSBGRG00000024916 NOL10 (ENSBGRG00000024949) #30 ENSBGRG00000010565 ENSBGRG00000010591 #31 HPCAL1 (ENSBGRG00000010770) #32 RRM2 (ENSBGRG00000010858) #33 CYS1 (ENSBGRG00000011167) KLF11 (ENSBGRG00000011215) #34 Domestic yak MODERN SPECIES 69 ENSBGRG00000020948 MID1IP1 (ENSBGRG00000021050) TSPAN7 (ENSBGRG00000021078) ENSBGRG00000021188 OTC (ENSBGRG00000021238) ENSBGRG00000021428 SYTL5 (ENSBGRG00000021997) ENSBGRG00000022166 ENSBGRG00000007060 ENSBGRG00000007080 CYBB (ENSBGRG00000007179) LANCL3 (ENSBGRG00000007763) ENSBGRG00000007860 ENSBGRG00000007894 PRRG1 (ENSBGRG00000007941) ENSBGRG00000008034 #22 ENSBGRG00000008058 ENSBGRG00000008090 ENSBGRG00000008137 ENSBGRG00000008170 ENSBGRG00000008253 ENSBGRG00000008290 ENSBGRG00000008355 TMEM47 (ENSBGRG00000008401) ENSBGRG00000008430 ENSBGRG00000008441 ENSBGRG00000008513 ENSBGRG00000008563 ENSBGRG00000008590 ENSBGRG00000008605 ENSBGRG00000008617 Caprinae ANCESTRAL SPECIES 9 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a.fb.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00390000016845 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Goat MODERN SPECIES 2 MSGN1 (ENSCHIG00000010365) GEN1 (ENSCHIG00000013888) SMC6 (ENSCHIG00000010144) VSNL1 (ENSCHIG00000006913) CYRIA (ENSCHIG00000018672) MYCN (ENSCHIG00000017882) DDX1 (ENSCHIG00000011046) NBAS (ENSCHIG00000014758) ENSCHIG00000013770 LRATD1 (ENSCHIG00000008065) ENSCHIG00000021912 TRIB2 (ENSCHIG00000015740) #18 LPIN1 (ENSCHIG00000018539) #19 NTSR2 (ENSCHIG00000011816) #20 GREB1 (ENSCHIG00000017667) #21 E2F6 (ENSCHIG00000016333) #22 ROCK2 (ENSCHIG00000013173) #23 SLC66A3 (ENSCHIG00000016355) #24 C2orf50 (ENSCHIG00000019292) #25 KCNF1 (ENSCHIG00000012739) #26 PDIA6 (ENSCHIG00000007838) #27 ATP6V1C2 (ENSCHIG00000017272) #29 NOL10 (ENSCHIG00000012935) #30 ENSCHIG00000027003 #31 HPCAL1 (ENSCHIG00000019475) #32 RRM2 (ENSCHIG00000009694) #33 ENSCHIG00000004531 CYS1 (ENSCHIG00000018115) KLF11 (ENSCHIG00000011294) #34 ENSCHIG00000026755 #35 TAF1B (ENSCHIG00000013783) #36 Rambouillet Sheep DUPLICATION Rambouillet Sheep MODERN SPECIES 19 KCNS3 (ENSOARG00020017454) MSGN1 (ENSOARG00020017429) SMC6 (ENSOARG00020016887) VSNL1 (ENSOARG00020016837) RAD51AP2 (ENSOARG00020016789) FAM49A (ENSOARG00020016491) ENSOARG00020016447 DDX1 (ENSOARG00020016090) NBAS (ENSOARG00020013231) LRATD1 (ENSOARG00020013098) TRIB2 (ENSOARG00020013035) #18 ENSOARG00020013002 LPIN1 (ENSOARG00020012462) #19 NTSR2 (ENSOARG00020012412) #20 GREB1 (ENSOARG00020011244) #21 E2F6 (ENSOARG00020011096) #22 ROCK2 (ENSOARG00020010271) #23 SLC66A3 (ENSOARG00020010159) #24 C2orf50 (ENSOARG00020010067) #25 KCNF1 (ENSOARG00020010045) #26 PDIA6 (ENSOARG00020009823) #27 ATP6V1C2 (ENSOARG00020009600) #29 NOL10 (ENSOARG00020009305) #30 ODC1 (ENSOARG00020009225) #31 HPCAL1 (ENSOARG00020009151) #32 ENSOARG00020009097 #33 CYS1 (ENSOARG00020009035) KLF11 (ENSOARG00020008965) #34 GRHL1 (ENSOARG00020008773) #35 TAF1B (ENSOARG00020008727) #36 YWHAQ (ENSOARG00020008682) #37 Rambouillet Sheep MODERN SPECIES 205 OTC (ENSOARG00020021238) ENSOARG00020021214 ENSOARG00020021200 ENSOARG00020021165 ENSOARG00020021153 ENSOARG00020021142 SRPX (ENSOARG00020020935) SYTL5 (ENSOARG00020020775) ENSOARG00020020752 DYNLT3 (ENSOARG00020020658) CYBB (ENSOARG00020020358) ENSOARG00020020318 ENSOARG00020020310 ENSOARG00020020297 ENSOARG00020020237 ENSOARG00020020215 #22 PRRG1 (ENSOARG00020020186) ENSOARG00020020167 ENSOARG00020020152 ENSOARG00020020139 ENSOARG00020019898 ENSOARG00020019815 TMEM47 (ENSOARG00020019772) ENSOARG00020019743 ENSOARG00020019728 ENSOARG00020019692 ENSOARG00020019542 ENSOARG00020019485 ENSOARG00020017689 TAB3 (ENSOARG00020017425) ENSOARG00020016575 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 238 TRIB2 (ENSMMSG00000001808) #18 LPIN1 (ENSMMSG00000001708) #19 NTSR2 (ENSMMSG00000001678) #20 GREB1 (ENSMMSG00000001601) #21 E2F6 (ENSMMSG00000001567) #22 ROCK2 (ENSMMSG00000001542) #23 SLC66A3 (ENSMMSG00000001508) #24 C2orf50 (ENSMMSG00000001487) #25 KCNF1 (ENSMMSG00000001477) #26 PDIA6 (ENSMMSG00000001421) #27 ENSMMSG00000001405 ATP6V1C2 (ENSMMSG00000001335) #29 NOL10 (ENSMMSG00000001168) #30 ENSMMSG00000001108 #31 HPCAL1 (ENSMMSG00000001078) #32 ENSMMSG00000001037 #33 CYS1 (ENSMMSG00000001021) KLF11 (ENSMMSG00000001004) #34 GRHL1 (ENSMMSG00000000910) #35 TAF1B (ENSMMSG00000000824) #36 Siberian musk deer MODERN SPECIES 1160 ENSMMSG00000023249 ENSMMSG00000023254 PRRG1 (ENSMMSG00000023259) ENSMMSG00000023268 #22 ENSMMSG00000023278 ENSMMSG00000023284 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000155734 #22 Hedgehog MODERN SPECIES 6410 E2F6 (ENSEEUG00000001403) #22 Common shrew MODERN SPECIES 4984 ENSSARG00000004194 #22 Atlantogenata ANCESTRAL SPECIES 14 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Xenarthra ANCESTRAL SPECIES 1909 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 Sloth MODERN SPECIES 5696 E2F6 (ENSCHOG00000005114) #22 Armadillo DUPLICATION Armadillo MODERN SPECIES 2193 KCND1 (ENSDNOG00000033902) OTUD5 (ENSDNOG00000032210) PIM2 (ENSDNOG00000015644) SLC35A2 (ENSDNOG00000015641) PQBP1 (ENSDNOG00000015637) TIMM17B (ENSDNOG00000047305) PCSK1N (ENSDNOG00000045077) ERAS (ENSDNOG00000014657) HDAC6 (ENSDNOG00000002754) GATA1 (ENSDNOG00000046529) ENSDNOG00000040933 ENSDNOG00000010600 SUV39H1 (ENSDNOG00000024286) WAS (ENSDNOG00000034763) ENSDNOG00000031239 ENSDNOG00000043712 #22 WDR13 (ENSDNOG00000012751) ENSDNOG00000010420 TBC1D25 (ENSDNOG00000007135) ENSDNOG00000041551 Armadillo MODERN SPECIES 3706 ENSDNOG00000000258 #22 ROCK2 (ENSDNOG00000007448) #23 ENSDNOG00000009355 Afrotheria ANCESTRAL SPECIES 26 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Tenrec MODERN SPECIES 13823 ENSETEG00000006676 E2F6 (ENSETEG00000006678) #22 Afrotheria_a ANCESTRAL SPECIES 26 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a #37 Elephant MODERN SPECIES 197 MSGN1 (ENSLAFG00000015319) GEN1 (ENSLAFG00000023255) SMC6 (ENSLAFG00000007506) VSNL1 (ENSLAFG00000015994) RAD51AP2 (ENSLAFG00000025867) CYRIA (ENSLAFG00000014613) MYCN (ENSLAFG00000015181) DDX1 (ENSLAFG00000002213) ENSLAFG00000030074 ENSLAFG00000013044 LRATD1 (ENSLAFG00000012514) TRIB2 (ENSLAFG00000013795) #18 LPIN1 (ENSLAFG00000008202) #19 ENSLAFG00000016802 GREB1 (ENSLAFG00000003341) #21 E2F6 (ENSLAFG00000021573) #22 ROCK2 (ENSLAFG00000007153) #23 SLC66A3 (ENSLAFG00000025769) #24 C2orf50 (ENSLAFG00000026090) #25 ENSLAFG00000026811 KCNF1 (ENSLAFG00000008774) #26 PDIA6 (ENSLAFG00000012281) #27 ATP6V1C2 (ENSLAFG00000022630) #29 NOL10 (ENSLAFG00000010489) #30 ODC1 (ENSLAFG00000005330) #31 HPCAL1 (ENSLAFG00000004069) #32 RRM2 (ENSLAFG00000003627) #33 ENSLAFG00000026037 KLF11 (ENSLAFG00000032182) #34 GRHL1 (ENSLAFG00000009330) #35 TAF1B (ENSLAFG00000000782) #36 Hyrax MODERN SPECIES 5244 E2F6 (ENSPCAG00000006241) #22 Marsupialia DUPLICATION Marsupialia DUPLICATION Marsupialia ANCESTRAL SPECIES 19 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a Opossum DUPLICATION Opossum MODERN SPECIES 2 TTR (ENSMODG00000010932) DSG2 (ENSMODG00000010945) DSG3 (ENSMODG00000011018) DSG4 (ENSMODG00000038707) DSG1 (ENSMODG00000011042) DSC1 (ENSMODG00000011082) DSC2 (ENSMODG00000011103) DSC3 (ENSMODG00000011124) ENSMODG00000011133 ENSMODG00000048348 ERAP1 (ENSMODG00000020072) ENSMODG00000020075 PCSK1 (ENSMODG00000020079) ENSMODG00000020082 ENSMODG00000049853 ENSMODG00000046286 #22 ELL2 (ENSMODG00000020086) ENSMODG00000039521 GLRX (ENSMODG00000045828) RHOBTB3 (ENSMODG00000020089) ENSMODG00000020090 SPATA9 (ENSMODG00000020092) RFESD (ENSMODG00000020093) GPR150 (ENSMODG00000036931) ARSK (ENSMODG00000020099) SKIC3 (ENSMODG00000020106) ENSMODG00000020109 ENSMODG00000020113 MCTP1 (ENSMODG00000020121) SLF1 (ENSMODG00000020124) KIAA0825 (ENSMODG00000020128) Opossum MODERN SPECIES PRNP (ENSMODG00000011569) TGFA (ENSMODG00000011562) ENSMODG00000011533 ENSMODG00000011528 PCYOX1 (ENSMODG00000011522) TIA1 (ENSMODG00000011515) C2orf42 (ENSMODG00000011505) MXD1 (ENSMODG00000011481) SNRNP27 (ENSMODG00000011407) ADD2 (ENSMODG00000011394) ENSMODG00000011333 HK2 (ENSMODG00000011328) POLE4 (ENSMODG00000011284) TACR1 (ENSMODG00000011268) GREB1 (ENSMODG00000011187) #21 ENSMODG00000011128 #22 ENSMODG00000040529 #22 ENSMODG00000038278 #22 MAK16 (ENSMODG00000011096) TTI2 (ENSMODG00000011073) ENSMODG00000042605 RNF122 (ENSMODG00000011059) DUSP26 (ENSMODG00000011051) ENSMODG00000023186 ENSMODG00000023184 ENSMODG00000046726 ENSMODG00000028692 UNC5D (ENSMODG00000010980) ENSMODG00000050376 ENSMODG00000045103 ENSMODG00000047823 Marsupialia_b ANCESTRAL SPECIES 9 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a Tasmanian devil MODERN SPECIES 1 ENSSHAG00000029721 ENSSHAG00000027641 ENSSHAG00000012319 SNRPG (ENSSHAG00000031755) PCYOX1 (ENSSHAG00000020850) TIA1 (ENSSHAG00000012544) C2orf42 (ENSSHAG00000021724) ASPRV1 (ENSSHAG00000004646) ENSSHAG00000028045 ENSSHAG00000020701 ENSSHAG00000008583 ENSSHAG00000010027 ENSSHAG00000030671 ENSSHAG00000025383 ENSSHAG00000004743 #21 ENSSHAG00000024456 #22 ENSSHAG00000007275 #22 ENSSHAG00000030276 #22 MAK16 (ENSSHAG00000007593) TTI2 (ENSSHAG00000007730) RNF122 (ENSSHAG00000008057) DUSP26 (ENSSHAG00000023682) ENSSHAG00000023368 UNC5D (ENSSHAG00000012207) KCNU1 (ENSSHAG00000011303) ZNF703 (ENSSHAG00000027883) ERLIN2 (ENSSHAG00000016369) PLPBP (ENSSHAG00000016447) ADGRA2 (ENSSHAG00000016544) BRF2 (ENSSHAG00000011928) ENSSHAG00000030221 Diprotodontia ANCESTRAL SPECIES 2 ENSGT00510000049083.b ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 Wallaby MODERN SPECIES 7728 ENSMEUG00000007957 #22 Diprotodontia_a ANCESTRAL SPECIES 2 ENSGT00510000049083.b ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 koala MODERN SPECIES 20 TGFA (ENSPCIG00000013095) ENSPCIG00000013093 ENSPCIG00000034187 ENSPCIG00000022813 PCYOX1 (ENSPCIG00000013085) TIA1 (ENSPCIG00000013084) C2orf42 (ENSPCIG00000013083) ASPRV1 (ENSPCIG00000027988) MXD1 (ENSPCIG00000032401) SNRNP27 (ENSPCIG00000027990) ADD2 (ENSPCIG00000027991) HK2 (ENSPCIG00000027993) POLE4 (ENSPCIG00000031861) TACR1 (ENSPCIG00000027998) GREB1 (ENSPCIG00000027999) #21 ENSPCIG00000028000 #22 ENSPCIG00000028003 #22 MAK16 (ENSPCIG00000028005) TTI2 (ENSPCIG00000028006) RNF122 (ENSPCIG00000034986) DUSP26 (ENSPCIG00000028181) ENSPCIG00000015650 UNC5D (ENSPCIG00000011973) ENSPCIG00000033834 ENSPCIG00000007142 ZNF703 (ENSPCIG00000035170) ERLIN2 (ENSPCIG00000008913) PLPBP (ENSPCIG00000008908) ADGRA2 (ENSPCIG00000008895) BRF2 (ENSPCIG00000008891) RAB11FIP1 (ENSPCIG00000008888) Common wonbat MODERN SPECIES 1017 PRNP (ENSVURG00010011920) TGFA (ENSVURG00010011914) ENSVURG00010011904 ENSVURG00010011897 PCYOX1 (ENSVURG00010011890) TIA1 (ENSVURG00010011866) C2orf42 (ENSVURG00010011848) ASPRV1 (ENSVURG00010011841) MXD1 (ENSVURG00010011831) SNRNP27 (ENSVURG00010011813) ADD2 (ENSVURG00010011797) HK2 (ENSVURG00010011774) POLE4 (ENSVURG00010011762) TACR1 (ENSVURG00010011752) GREB1 (ENSVURG00010011701) #21 E2F6 (ENSVURG00010011677) #22 MAK16 (ENSVURG00010011670) TTI2 (ENSVURG00010011659) RNF122 (ENSVURG00010011653) DUSP26 (ENSVURG00010011646) ENSVURG00010011635 UNC5D (ENSVURG00010011273) ENSVURG00010011231 ENSVURG00010011221 ENSVURG00010011215 ZNF703 (ENSVURG00010011201) ERLIN2 (ENSVURG00010011180) PLPBP (ENSVURG00010011165) ADGRA2 (ENSVURG00010010473) BRF2 (ENSVURG00010010438) ENSVURG00010010429 Marsupialia ANCESTRAL SPECIES 19 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 Opossum MODERN SPECIES TGFA (ENSMODG00000011562) ENSMODG00000011533 ENSMODG00000011528 PCYOX1 (ENSMODG00000011522) TIA1 (ENSMODG00000011515) C2orf42 (ENSMODG00000011505) MXD1 (ENSMODG00000011481) SNRNP27 (ENSMODG00000011407) ADD2 (ENSMODG00000011394) ENSMODG00000011333 HK2 (ENSMODG00000011328) POLE4 (ENSMODG00000011284) TACR1 (ENSMODG00000011268) GREB1 (ENSMODG00000011187) #21 ENSMODG00000011128 #22 ENSMODG00000040529 #22 ENSMODG00000038278 #22 MAK16 (ENSMODG00000011096) TTI2 (ENSMODG00000011073) ENSMODG00000042605 RNF122 (ENSMODG00000011059) DUSP26 (ENSMODG00000011051) ENSMODG00000023186 ENSMODG00000023184 ENSMODG00000046726 ENSMODG00000028692 UNC5D (ENSMODG00000010980) ENSMODG00000050376 ENSMODG00000045103 ENSMODG00000047823 ZNF703 (ENSMODG00000010894) Marsupialia_b ANCESTRAL SPECIES 9 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 Tasmanian devil MODERN SPECIES 1 ENSSHAG00000027641 ENSSHAG00000012319 SNRPG (ENSSHAG00000031755) PCYOX1 (ENSSHAG00000020850) TIA1 (ENSSHAG00000012544) C2orf42 (ENSSHAG00000021724) ASPRV1 (ENSSHAG00000004646) ENSSHAG00000028045 ENSSHAG00000020701 ENSSHAG00000008583 ENSSHAG00000010027 ENSSHAG00000030671 ENSSHAG00000025383 ENSSHAG00000004743 #21 ENSSHAG00000024456 #22 ENSSHAG00000007275 #22 ENSSHAG00000030276 #22 MAK16 (ENSSHAG00000007593) TTI2 (ENSSHAG00000007730) RNF122 (ENSSHAG00000008057) DUSP26 (ENSSHAG00000023682) ENSSHAG00000023368 UNC5D (ENSSHAG00000012207) KCNU1 (ENSSHAG00000011303) ZNF703 (ENSSHAG00000027883) ERLIN2 (ENSSHAG00000016369) PLPBP (ENSSHAG00000016447) ADGRA2 (ENSSHAG00000016544) BRF2 (ENSSHAG00000011928) ENSSHAG00000030221 ENSSHAG00000016864 Diprotodontia ANCESTRAL SPECIES 2 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 ENSGT00390000010474 Diprotodontia_a ANCESTRAL SPECIES 2 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 ENSGT00390000010474 koala MODERN SPECIES 20 ENSPCIG00000013093 ENSPCIG00000034187 ENSPCIG00000022813 PCYOX1 (ENSPCIG00000013085) TIA1 (ENSPCIG00000013084) C2orf42 (ENSPCIG00000013083) ASPRV1 (ENSPCIG00000027988) MXD1 (ENSPCIG00000032401) SNRNP27 (ENSPCIG00000027990) ADD2 (ENSPCIG00000027991) HK2 (ENSPCIG00000027993) POLE4 (ENSPCIG00000031861) TACR1 (ENSPCIG00000027998) GREB1 (ENSPCIG00000027999) #21 ENSPCIG00000028000 #22 ENSPCIG00000028003 #22 MAK16 (ENSPCIG00000028005) TTI2 (ENSPCIG00000028006) RNF122 (ENSPCIG00000034986) DUSP26 (ENSPCIG00000028181) ENSPCIG00000015650 UNC5D (ENSPCIG00000011973) ENSPCIG00000033834 ENSPCIG00000007142 ZNF703 (ENSPCIG00000035170) ERLIN2 (ENSPCIG00000008913) PLPBP (ENSPCIG00000008908) ADGRA2 (ENSPCIG00000008895) BRF2 (ENSPCIG00000008891) RAB11FIP1 (ENSPCIG00000008888) GOT1L1 (ENSPCIG00000008886) Marsupialia ANCESTRAL SPECIES 19 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 Marsupialia_b ANCESTRAL SPECIES 9 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 Tasmanian devil MODERN SPECIES 1 ENSSHAG00000012319 SNRPG (ENSSHAG00000031755) PCYOX1 (ENSSHAG00000020850) TIA1 (ENSSHAG00000012544) C2orf42 (ENSSHAG00000021724) ASPRV1 (ENSSHAG00000004646) ENSSHAG00000028045 ENSSHAG00000020701 ENSSHAG00000008583 ENSSHAG00000010027 ENSSHAG00000030671 ENSSHAG00000025383 ENSSHAG00000004743 #21 ENSSHAG00000024456 #22 ENSSHAG00000007275 #22 ENSSHAG00000030276 #22 MAK16 (ENSSHAG00000007593) TTI2 (ENSSHAG00000007730) RNF122 (ENSSHAG00000008057) DUSP26 (ENSSHAG00000023682) ENSSHAG00000023368 UNC5D (ENSSHAG00000012207) KCNU1 (ENSSHAG00000011303) ZNF703 (ENSSHAG00000027883) ERLIN2 (ENSSHAG00000016369) PLPBP (ENSSHAG00000016447) ADGRA2 (ENSSHAG00000016544) BRF2 (ENSSHAG00000011928) ENSSHAG00000030221 ENSSHAG00000016864 ADRB3 (ENSSHAG00000025094) Opossum DUPLICATION Opossum MODERN SPECIES 627 ENSMODG00000009077 ENSMODG00000009064 ENSMODG00000036377 PCDH19 (ENSMODG00000009008) TNMD (ENSMODG00000008987) ENSMODG00000017489 ENSMODG00000045389 ENSMODG00000017486 ENSMODG00000025187 ENSMODG00000049110 ENSMODG00000017482 ENSMODG00000017480 ENSMODG00000025190 ENSMODG00000017473 ENSMODG00000044797 ENSMODG00000029644 #22 ENSMODG00000017465 ENSMODG00000025192 ENSMODG00000017423 ENSMODG00000027595 ENSMODG00000022861 SH3BGRL (ENSMODG00000004322) BRWD3 (ENSMODG00000004308) ENSMODG00000014584 ENSMODG00000004273 TBX22 (ENSMODG00000004255) ENSMODG00000043255 ENSMODG00000043149 ENSMODG00000004233 GPR174 (ENSMODG00000022863) ENSMODG00000004214 Opossum MODERN SPECIES ENSMODG00000011533 ENSMODG00000011528 PCYOX1 (ENSMODG00000011522) TIA1 (ENSMODG00000011515) C2orf42 (ENSMODG00000011505) MXD1 (ENSMODG00000011481) SNRNP27 (ENSMODG00000011407) ADD2 (ENSMODG00000011394) ENSMODG00000011333 HK2 (ENSMODG00000011328) POLE4 (ENSMODG00000011284) TACR1 (ENSMODG00000011268) GREB1 (ENSMODG00000011187) #21 ENSMODG00000011128 #22 ENSMODG00000040529 #22 ENSMODG00000038278 #22 MAK16 (ENSMODG00000011096) TTI2 (ENSMODG00000011073) ENSMODG00000042605 RNF122 (ENSMODG00000011059) DUSP26 (ENSMODG00000011051) ENSMODG00000023186 ENSMODG00000023184 ENSMODG00000046726 ENSMODG00000028692 UNC5D (ENSMODG00000010980) ENSMODG00000050376 ENSMODG00000045103 ENSMODG00000047823 ZNF703 (ENSMODG00000010894) ERLIN2 (ENSMODG00000010889) Platypus MODERN SPECIES NT5C1B (ENSOANG00000007019) RDH14 (ENSOANG00000049985) KCNS3 (ENSOANG00000014360) ENSOANG00000002187 ENSOANG00000039008 ENSOANG00000010714 VSNL1 (ENSOANG00000040965) CYRIA (ENSOANG00000050664) MYCN (ENSOANG00000042652) DDX1 (ENSOANG00000005450) NBAS (ENSOANG00000004483) LRATD1 (ENSOANG00000007163) TRIB2 (ENSOANG00000001757) #18 LPIN1 (ENSOANG00000002670) #19 GREB1 (ENSOANG00000002667) #21 ENSOANG00000002666 #22 ROCK2 (ENSOANG00000002665) #23 SLC66A3 (ENSOANG00000002664) #24 C2orf50 (ENSOANG00000001088) #25 PDIA6 (ENSOANG00000014500) #27 ATP6V1C2 (ENSOANG00000014499) #29 NOL10 (ENSOANG00000014497) #30 ODC1 (ENSOANG00000002322) #31 HPCAL1 (ENSOANG00000050538) #32 RRM2 (ENSOANG00000005507) #33 SLC17A5 (ENSOANG00000012352) ENSOANG00000043962 MTO1 (ENSOANG00000003443) ENSOANG00000013441 ENSOANG00000006467 KCNQ5 (ENSOANG00000003444) Sauria ANCESTRAL SPECIES 1 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Lepidosauria ANCESTRAL SPECIES ENSGT00940000160181 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00960000192062 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 tuatara DUPLICATION tuatara MODERN SPECIES 635 LPIN1 (ENSSPUG00000000067) #19 GREB1 (ENSSPUG00000000138) #21 ENSSPUG00000000245 #22 ENSSPUG00000000255 #22 ENSSPUG00000000264 ENSSPUG00000000272 #23 ENSSPUG00000000278 #23 SLC66A3 (ENSSPUG00000000343) #24 tuatara MODERN SPECIES 635 LPIN1 (ENSSPUG00000000067) #19 GREB1 (ENSSPUG00000000138) #21 ENSSPUG00000000245 #22 ENSSPUG00000000255 #22 ENSSPUG00000000264 ENSSPUG00000000272 #23 ENSSPUG00000000278 #23 SLC66A3 (ENSSPUG00000000343) #24 Episquamata ANCESTRAL SPECIES ENSGT00940000155745 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00960000192062 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Laterata ANCESTRAL SPECIES 13 ENSGT00940000160181 ENSGT00940000155745 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Common wall lizard MODERN SPECIES 11 CILK1 (ENSPMRG00000004130) ENSPMRG00000004127 ENSPMRG00000004120 ENSPMRG00000004100 CYRIA (ENSPMRG00000004077) ENSPMRG00000004072 MYCN (ENSPMRG00000004070) DDX1 (ENSPMRG00000004051) NBAS (ENSPMRG00000003021) LRATD1 (ENSPMRG00000002649) ENSPMRG00000002643 ENSPMRG00000002636 TRIB2 (ENSPMRG00000002631) #18 LPIN1 (ENSPMRG00000002595) #19 GREB1 (ENSPMRG00000002546) #21 E2F6 (ENSPMRG00000002524) #22 ROCK2 (ENSPMRG00000002407) #23 SLC66A3 (ENSPMRG00000002376) #24 C2orf50 (ENSPMRG00000002369) #25 KCNF1 (ENSPMRG00000011788) #26 PDIA6 (ENSPMRG00000011782) #27 ATP6V1C2 (ENSPMRG00000011774) #29 ODC1 (ENSPMRG00000011766) #31 HPCAL1 (ENSPMRG00000011758) #32 NOL10 (ENSPMRG00000011740) #30 RRM2 (ENSPMRG00000011731) #33 KLF11 (ENSPMRG00000011727) #34 GRHL1 (ENSPMRG00000011712) #35 TAF1B (ENSPMRG00000011702) #36 ENSPMRG00000011699 ENSPMRG00000011696 #37 Argentine black and white tegu MODERN SPECIES 43 KCNS3 (ENSSMRG00000022758) MSGN1 (ENSSMRG00000022757) GEN1 (ENSSMRG00000022756) SMC6 (ENSSMRG00000022755) VSNL1 (ENSSMRG00000022754) ENSSMRG00000022753 CYRIA (ENSSMRG00000022751) ENSSMRG00000022749 MYCN (ENSSMRG00000022746) DDX1 (ENSSMRG00000022744) NBAS (ENSSMRG00000022743) LRATD1 (ENSSMRG00000022742) TRIB2 (ENSSMRG00000022739) #18 LPIN1 (ENSSMRG00000022737) #19 GREB1 (ENSSMRG00000022736) #21 E2F6 (ENSSMRG00000022735) #22 SLC23A1 (ENSSMRG00000022734) PAIP2 (ENSSMRG00000022733) MATR3 (ENSSMRG00000022732) SIL1 (ENSSMRG00000022729) LRRTM2 (ENSSMRG00000022728) CTNNA1 (ENSSMRG00000022726) HSPA9 (ENSSMRG00000022725) ETF1 (ENSSMRG00000022724) FBXW11 (ENSSMRG00000022723) ENSSMRG00000022721 ENSSMRG00000022720 FGF18 (ENSSMRG00000022718) ENSSMRG00000022716 TLX3 (ENSSMRG00000022715) RANBP17 (ENSSMRG00000022710) Toxicofera ANCESTRAL SPECIES ENSGT00940000155745 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00960000192062 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Elapidae ANCESTRAL SPECIES ENSGT01090000260040.b.b.b.b #37 ENSGT00440000033827.c #36 ENSGT00940000157612 #35 ENSGT00940000155982 #34 ENSGT00390000011297 ENSGT00390000013305.a.a #33 ENSGT00940000154645.A #32 ENSGT00950000182995.e.a.a.a #31 ENSGT00390000007900 #30 ENSGT00390000004263.b #29 ENSGT00940000155646 #27 ENSGT00940000160213 #26 ENSGT00940000154459.B #25 ENSGT00940000153916.B #24 ENSGT01030000234517.D #23 ENSGT00940000155734 #22 ENSGT01010000229139 ENSGT00390000008041.C #21 ENSGT00940000157219 #19 ENSGT00950000182986.a.b.a #18 ENSGT00940000161165 ENSGT00390000012474 ENSGT00940000155678 ENSGT00940000158432 ENSGT00390000015159.a.b ENSGT00940000156513 ENSGT00550000074816.A.a.c ENSGT00940000159266 ENSGT00530000063712.a.b ENSGT00940000155979 ENSGT00940000155745 Elapidae_a ANCESTRAL SPECIES 6 ENSGT01090000260040.b.b.b.b #37 ENSGT00440000033827.c #36 ENSGT00940000157612 #35 ENSGT00940000155982 #34 ENSGT00390000011297 ENSGT00390000013305.a.a #33 ENSGT00940000154645.A #32 ENSGT00950000182995.e.a.a.a #31 ENSGT00390000007900 #30 ENSGT00390000004263.b #29 ENSGT00940000155646 #27 ENSGT00940000160213 #26 ENSGT00940000154459.B #25 ENSGT00940000153916.B #24 ENSGT01030000234517.D #23 ENSGT00940000155734 #22 ENSGT01010000229139 ENSGT00390000008041.C #21 ENSGT00940000157219 #19 ENSGT00950000182986.a.b.a #18 ENSGT00940000161165 ENSGT00390000012474 ENSGT00940000155678 ENSGT00940000158432 ENSGT00390000015159.a.b ENSGT00940000156513 ENSGT00550000074816.A.a.c ENSGT00940000159266.e ENSGT00530000063712.a.b ENSGT00940000155979 ENSGT00940000155745 Acanthophiinae ANCESTRAL SPECIES 8 ENSGT01090000260040.b.b.b.b #37 ENSGT00440000033827.c #36 ENSGT00940000157612 #35 ENSGT00940000155982 #34 ENSGT00390000011297 ENSGT00390000013305.a.a #33 ENSGT00940000154645.A #32 ENSGT00950000182995.e.a.a.a #31 ENSGT00390000007900 #30 ENSGT00390000004263.b #29 ENSGT00940000155646 #27 ENSGT00940000160213 #26 ENSGT00940000154459.B #25 ENSGT00940000153916.B #24 ENSGT01030000234517.D #23 ENSGT00940000155734 #22 ENSGT01010000229139 ENSGT00390000008041.C #21 ENSGT00940000157219.c #19 ENSGT00950000182986.a.b.a #18 ENSGT00940000161165 ENSGT00390000012474 ENSGT00940000155678 ENSGT00940000158432 ENSGT00390000015159.a.b ENSGT00940000156513 ENSGT00550000074816.A.a.c ENSGT00940000159266.e ENSGT00530000063712.a.b ENSGT00940000155979 ENSGT00940000155745 Mainland tiger snake MODERN SPECIES 61 YWHAQ (ENSNSUG00000020419) #37 TAF1B (ENSNSUG00000020418) #36 GRHL1 (ENSNSUG00000020417) #35 KLF11 (ENSNSUG00000020416) #34 MTO1 (ENSNSUG00000020415) RRM2 (ENSNSUG00000020414) #33 HPCAL1 (ENSNSUG00000020412) #32 ODC1 (ENSNSUG00000020411) #31 NOL10 (ENSNSUG00000020410) #30 ATP6V1C2 (ENSNSUG00000020409) #29 PDIA6 (ENSNSUG00000020408) #27 KCNF1 (ENSNSUG00000020407) #26 C2orf50 (ENSNSUG00000020406) #25 ENSNSUG00000020405 ROCK2 (ENSNSUG00000020375) #23 ENSNSUG00000020374 #22 GREB1 (ENSNSUG00000020373) #21 ENSNSUG00000020371 #19 ENSNSUG00000020370 #19 ENSNSUG00000020369 TRIB2 (ENSNSUG00000020368) #18 ENSNSUG00000020366 ENSNSUG00000020365 LRATD1 (ENSNSUG00000020363) NBAS (ENSNSUG00000020362) DDX1 (ENSNSUG00000020339) MYCN (ENSNSUG00000020338) CYRIA (ENSNSUG00000020335) Eastern brown snake MODERN SPECIES 4 ENSPTXG00000012054 #36 ENSPTXG00000012055 #36 GRHL1 (ENSPTXG00000012057) #35 KLF11 (ENSPTXG00000012059) #34 MTO1 (ENSPTXG00000012060) RRM2 (ENSPTXG00000012071) #33 HPCAL1 (ENSPTXG00000012834) #32 ODC1 (ENSPTXG00000012836) #31 NOL10 (ENSPTXG00000012838) #30 ATP6V1C2 (ENSPTXG00000012840) #29 PDIA6 (ENSPTXG00000012842) #27 KCNF1 (ENSPTXG00000012843) #26 C2orf50 (ENSPTXG00000012845) #25 SLC66A3 (ENSPTXG00000012846) #24 ROCK2 (ENSPTXG00000012863) #23 E2F6 (ENSPTXG00000014503) #22 ENSPTXG00000014504 GREB1 (ENSPTXG00000014506) #21 LPIN1 (ENSPTXG00000014511) #19 TRIB2 (ENSPTXG00000014512) #18 LRATD1 (ENSPTXG00000014513) NBAS (ENSPTXG00000014516) DDX1 (ENSPTXG00000014521) MYCN (ENSPTXG00000014526) CYRIA (ENSPTXG00000014529) VSNL1 (ENSPTXG00000014531) SMC6 (ENSPTXG00000014533) ENSPTXG00000014536 ENSPTXG00000014537 MSGN1 (ENSPTXG00000014539) KCNS3 (ENSPTXG00000014540) Blue-lipped sea krait MODERN SPECIES 5184 ROCK2 (ENSLLTG00000007823) #23 E2F6 (ENSLLTG00000007623) #22 Indian cobra MODERN SPECIES KLF11 (ENSNNAG00000012239) #34 ENSNNAG00000012268 ENSNNAG00000012297 ENSNNAG00000012340 ENSNNAG00000012348 RRM2 (ENSNNAG00000012363) #33 HPCAL1 (ENSNNAG00000012397) #32 ODC1 (ENSNNAG00000012411) #31 NOL10 (ENSNNAG00000012445) #30 ATP6V1C2 (ENSNNAG00000012518) #29 PDIA6 (ENSNNAG00000012553) #27 KCNF1 (ENSNNAG00000012626) #26 C2orf50 (ENSNNAG00000012650) #25 SLC66A3 (ENSNNAG00000012672) #24 ROCK2 (ENSNNAG00000012714) #23 E2F6 (ENSNNAG00000004227) #22 ENSNNAG00000004249 GREB1 (ENSNNAG00000004275) #21 LPIN1 (ENSNNAG00000004384) #19 TRIB2 (ENSNNAG00000004479) #18 LRATD1 (ENSNNAG00000004490) NBAS (ENSNNAG00000004531) DDX1 (ENSNNAG00000004957) MYCN (ENSNNAG00000005197) CYRIA (ENSNNAG00000005209) ENSNNAG00000005240 ENSNNAG00000005266 VSNL1 (ENSNNAG00000005283) SMC6 (ENSNNAG00000005310) ENSNNAG00000005468 MSGN1 (ENSNNAG00000005477) Lizard MODERN SPECIES MYCN (ENSACAG00000011351) DDX1 (ENSACAG00000011036) NBAS (ENSACAG00000010861) ENSACAG00000040466 ENSACAG00000036037 ENSACAG00000042544 ENSACAG00000038844 ENSACAG00000036783 LRATD1 (ENSACAG00000000402) ENSACAG00000038536 TRIB2 (ENSACAG00000036134) #18 LPIN1 (ENSACAG00000000325) #19 GREB1 (ENSACAG00000000267) #21 ENSACAG00000035631 ENSACAG00000042924 E2F6 (ENSACAG00000000263) #22 ENSACAG00000034810 ENSACAG00000044307 ENSACAG00000042387 ROCK2 (ENSACAG00000000198) #23 SLC66A3 (ENSACAG00000039706) #24 C2orf50 (ENSACAG00000000194) #25 PDIA6 (ENSACAG00000012985) #27 ATP6V1C2 (ENSACAG00000012893) #29 NOL10 (ENSACAG00000012738) #30 ODC1 (ENSACAG00000012600) #31 HPCAL1 (ENSACAG00000012561) #32 RRM2 (ENSACAG00000000112) #33 KLF11 (ENSACAG00000000128) #34 GRHL1 (ENSACAG00000000132) #35 ENSACAG00000040408 Archelosauria ANCESTRAL SPECIES 1 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Cryptodira ANCESTRAL SPECIES 1 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.jb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Testudinoidea ANCESTRAL SPECIES 12 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.jb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219.a #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Emydidae ANCESTRAL SPECIES 8 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.jb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219.a #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT01050000247847 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Three-toed box turtle MODERN SPECIES 15 KCNS3 (ENSTMTG00000004528) MSGN1 (ENSTMTG00000004516) GEN1 (ENSTMTG00000004477) SMC6 (ENSTMTG00000003697) VSNL1 (ENSTMTG00000003601) RAD51AP2 (ENSTMTG00000003579) CYRIA (ENSTMTG00000003533) ENSTMTG00000003512 DDX1 (ENSTMTG00000003436) NBAS (ENSTMTG00000002506) LRATD1 (ENSTMTG00000002408) TRIB2 (ENSTMTG00000002404) #18 LPIN1 (ENSTMTG00000002382) #19 ENSTMTG00000002372 GREB1 (ENSTMTG00000002344) #21 E2F6 (ENSTMTG00000002335) #22 ROCK2 (ENSTMTG00000002325) #23 C2orf50 (ENSTMTG00000002318) #25 KCNF1 (ENSTMTG00000002317) #26 PDIA6 (ENSTMTG00000002306) #27 ATP6V1C2 (ENSTMTG00000002250) #29 NOL10 (ENSTMTG00000002231) #30 ODC1 (ENSTMTG00000002221) #31 HPCAL1 (ENSTMTG00000002212) #32 RRM2 (ENSTMTG00000002199) #33 KLF11 (ENSTMTG00000002194) #34 ENSTMTG00000002187 #35 ENSTMTG00000002182 #35 TAF1B (ENSTMTG00000002170) #36 YWHAQ (ENSTMTG00000002159) #37 ADAM17 (ENSTMTG00000002145) painted turtle MODERN SPECIES 2390 RDH14 (ENSCPBG00000013290) KCNS3 (ENSCPBG00000013292) ENSCPBG00000013295 MSGN1 (ENSCPBG00000013298) GEN1 (ENSCPBG00000013299) SMC6 (ENSCPBG00000013302) VSNL1 (ENSCPBG00000013304) CYRIA (ENSCPBG00000013312) ENSCPBG00000013321 DDX1 (ENSCPBG00000013330) NBAS (ENSCPBG00000013977) LRATD1 (ENSCPBG00000013990) TRIB2 (ENSCPBG00000013994) #18 LPIN1 (ENSCPBG00000014000) #19 GREB1 (ENSCPBG00000014004) #21 E2F6 (ENSCPBG00000014007) #22 ROCK2 (ENSCPBG00000014009) #23 SLC66A3 (ENSCPBG00000014025) #24 C2orf50 (ENSCPBG00000014027) #25 KCNF1 (ENSCPBG00000014030) #26 PDIA6 (ENSCPBG00000014031) #27 ATP6V1C2 (ENSCPBG00000014032) #29 RRM2 (ENSCPBG00000014047) #33 ENSCPBG00000014048 KLF11 (ENSCPBG00000014051) #34 GRHL1 (ENSCPBG00000014054) #35 TAF1B (ENSCPBG00000014058) #36 YWHAQ (ENSCPBG00000014061) #37 ADAM17 (ENSCPBG00000014063) IAH1 (ENSCPBG00000014070) CPSF3 (ENSCPBG00000014074) Testudinidae ANCESTRAL SPECIES 10 ENSGT00940000160181 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432.jb.a ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219.a #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Goode s thornscrub tortoise MODERN SPECIES 17 MSGN1 (ENSGEVG00005006020) GEN1 (ENSGEVG00005006047) SMC6 (ENSGEVG00005006087) VSNL1 (ENSGEVG00005006120) RAD51AP2 (ENSGEVG00005006144) CYRIA (ENSGEVG00005006179) ENSGEVG00005006200 DDX1 (ENSGEVG00005006272) NBAS (ENSGEVG00005006521) ENSGEVG00005007207 LRATD1 (ENSGEVG00005007216) TRIB2 (ENSGEVG00005007232) #18 ENSGEVG00005007261 LPIN1 (ENSGEVG00005007279) #19 GREB1 (ENSGEVG00005007324) #21 E2F6 (ENSGEVG00005007439) #22 ROCK2 (ENSGEVG00005007467) #23 SLC66A3 (ENSGEVG00005007519) #24 C2orf50 (ENSGEVG00005007561) #25 KCNF1 (ENSGEVG00005007578) #26 PDIA6 (ENSGEVG00005007586) #27 ATP6V1C2 (ENSGEVG00005007637) #29 NOL10 (ENSGEVG00005007769) #30 ODC1 (ENSGEVG00005007862) #31 HPCAL1 (ENSGEVG00005007881) #32 RRM2 (ENSGEVG00005007899) #33 KLF11 (ENSGEVG00005007934) #34 GRHL1 (ENSGEVG00005008039) #35 TAF1B (ENSGEVG00005008345) #36 YWHAQ (ENSGEVG00005008366) #37 ADAM17 (ENSGEVG00005008380) Abingdon island giant tortoise MODERN SPECIES 1684 ENSCABG00000019152 #19 ENSCABG00000019154 #19 GREB1 (ENSCABG00000019155) #21 E2F6 (ENSCABG00000019157) #22 ROCK2 (ENSCABG00000019159) #23 ENSCABG00000019163 SLC66A3 (ENSCABG00000019165) #24 C2orf50 (ENSCABG00000019167) #25 KCNF1 (ENSCABG00000019170) #26 Chinese turtle MODERN SPECIES 2229 ENSPSIG00000015460 ENSPSIG00000015188 ENSPSIG00000001770 TRIB2 (ENSPSIG00000014705) #18 LPIN1 (ENSPSIG00000014570) #19 ENSPSIG00000001765 GREB1 (ENSPSIG00000014417) #21 E2F6 (ENSPSIG00000014094) #22 ROCK2 (ENSPSIG00000010324) #23 SLC66A3 (ENSPSIG00000009943) #24 C2orf50 (ENSPSIG00000009878) #25 KCNF1 (ENSPSIG00000001763) #26 PDIA6 (ENSPSIG00000006847) #27 ATP6V1C2 (ENSPSIG00000015716) #29 NOL10 (ENSPSIG00000015359) #30 ODC1 (ENSPSIG00000014299) #31 Archosauria ANCESTRAL SPECIES 3 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Australian saltwater crocodile MODERN SPECIES 38 KCNS3 (ENSCPRG00005005307) MSGN1 (ENSCPRG00005005322) GEN1 (ENSCPRG00005005337) ENSCPRG00005005424 ENSCPRG00005005504 VSNL1 (ENSCPRG00005005557) ENSCPRG00005005559 CYRIA (ENSCPRG00005005582) MYCN (ENSCPRG00005005639) DDX1 (ENSCPRG00005005666) NBAS (ENSCPRG00005005782) ENSCPRG00005005922 TRIB2 (ENSCPRG00005005953) #18 LPIN1 (ENSCPRG00005005996) #19 GREB1 (ENSCPRG00005006077) #21 ENSCPRG00005006100 #22 ROCK2 (ENSCPRG00005006216) #23 ENSCPRG00005006542 SLC66A3 (ENSCPRG00005006550) #24 C2orf50 (ENSCPRG00005006553) #25 KCNF1 (ENSCPRG00005006569) #26 PDIA6 (ENSCPRG00005006586) #27 ATP6V1C2 (ENSCPRG00005006593) #29 NOL10 (ENSCPRG00005006615) #30 ODC1 (ENSCPRG00005006625) #31 HPCAL1 (ENSCPRG00005006636) #32 RRM2 (ENSCPRG00005006653) #33 KLF11 (ENSCPRG00005006661) #34 GRHL1 (ENSCPRG00005006677) #35 TAF1B (ENSCPRG00005006808) #36 YWHAQ (ENSCPRG00005006856) #37 Aves ANCESTRAL SPECIES 10 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 African ostrich MODERN SPECIES 496 LPIN1 (ENSSCUG00000006650) #19 GREB1 (ENSSCUG00000006642) #21 E2F6 (ENSSCUG00000006634) #22 ENSSCUG00000006632 ENSSCUG00000006619 #23 Neognathae ANCESTRAL SPECIES 2 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Galloanserae ANCESTRAL SPECIES 2 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Anatidae ANCESTRAL SPECIES ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT01000000216411 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Pink-footed goose MODERN SPECIES 48 MYCN (ENSABRG00000001195) DDX1 (ENSABRG00000001132) NBAS (ENSABRG00000000865) LRATD1 (ENSABRG00000000829) ENSABRG00000000823 TRIB2 (ENSABRG00000000721) #18 LPIN1 (ENSABRG00000000615) #19 GREB1 (ENSABRG00000000348) #21 E2F6 (ENSABRG00000000297) #22 ROCK2 (ENSABRG00000000240) #23 SLC66A3 (ENSABRG00000000216) #24 C2orf50 (ENSABRG00000010843) #25 ENSABRG00000010830 KCNF1 (ENSABRG00000010814) #26 PDIA6 (ENSABRG00000010799) #27 ATP6V1C2 (ENSABRG00000010781) #29 NOL10 (ENSABRG00000010777) #30 ODC1 (ENSABRG00000010758) #31 HPCAL1 (ENSABRG00000010754) #32 RRM2 (ENSABRG00000010731) #33 KLF11 (ENSABRG00000010724) #34 GRHL1 (ENSABRG00000010717) #35 TAF1B (ENSABRG00000010705) #36 YWHAQ (ENSABRG00000010695) #37 Duck MODERN SPECIES 21 ENSAPLG00000012994 ENSAPLG00000031242 ASCC3 (ENSAPLG00000012589) SIM1 (ENSAPLG00000012534) ENSAPLG00000020003 PRDM13 (ENSAPLG00000027679) CCNC (ENSAPLG00000007635) ENSAPLG00000006518 USP45 (ENSAPLG00000007229) PNISR (ENSAPLG00000006740) ENSAPLG00000006613 FAXC (ENSAPLG00000006456) FBXL4 (ENSAPLG00000006412) LPIN1 (ENSAPLG00000013386) #19 GREB1 (ENSAPLG00000014229) #21 E2F6 (ENSAPLG00000012476) #22 ROCK2 (ENSAPLG00000011393) #23 SLC66A3 (ENSAPLG00000030742) #24 C2orf50 (ENSAPLG00000011213) #25 ENSAPLG00000001506 ENSAPLG00000027989 PDIA6 (ENSAPLG00000010864) #27 ATP6V1C2 (ENSAPLG00000010549) #29 NOL10 (ENSAPLG00000009885) #30 ODC1 (ENSAPLG00000009531) #31 RRM2 (ENSAPLG00000009301) #33 ENSAPLG00000030281 KLF11 (ENSAPLG00000009146) #34 GRHL1 (ENSAPLG00000008667) #35 TAF1B (ENSAPLG00000008537) #36 YWHAQ (ENSAPLG00000023697) #37 Phasianidae DUPLICATION Phasianidae ANCESTRAL SPECIES 3 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734.ab #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Japanese quail MODERN SPECIES 21 ENSCJPG00005011119 MSGN1 (ENSCJPG00005011118) GEN1 (ENSCJPG00005011117) SMC6 (ENSCJPG00005011116) VSNL1 (ENSCJPG00005011115) ENSCJPG00005011113 CYRIA (ENSCJPG00005011106) MYCN (ENSCJPG00005011100) DDX1 (ENSCJPG00005011093) NBAS (ENSCJPG00005011080) LRATD1 (ENSCJPG00005011069) TRIB2 (ENSCJPG00005011061) #18 LPIN1 (ENSCJPG00005011058) #19 GREB1 (ENSCJPG00005011057) #21 ENSCJPG00005011056 E2F6 (ENSCJPG00005011055) #22 ROCK2 (ENSCJPG00005011054) #23 SLC66A3 (ENSCJPG00005011053) #24 C2orf50 (ENSCJPG00005011052) #25 KCNF1 (ENSCJPG00005011049) #26 PDIA6 (ENSCJPG00005011047) #27 ATP6V1C2 (ENSCJPG00005011046) #29 NOL10 (ENSCJPG00005011045) #30 ODC1 (ENSCJPG00005011044) #31 HPCAL1 (ENSCJPG00005011043) #32 RRM2 (ENSCJPG00005011038) #33 ENSCJPG00005011037 KLF11 (ENSCJPG00005011036) #34 GRHL1 (ENSCJPG00005011034) #35 TAF1B (ENSCJPG00005011032) #36 YWHAQ (ENSCJPG00005011031) #37 Phasianidae_b ANCESTRAL SPECIES 2 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734.ab #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Chicken MODERN SPECIES 22 ZPAX (ENSGALG00010003469) MSGN1 (ENSGALG00010003849) GEN1 (ENSGALG00010002376) SMC6 (ENSGALG00010002372) VSNL1 (ENSGALG00010002364) ENSGALG00010002344 FAM49A (ENSGALG00010002341) MYCN (ENSGALG00010003652) ENSGALG00010003639 DDX1 (ENSGALG00010003057) NBAS (ENSGALG00010002952) FAM84A (ENSGALG00010002918) TRIB2 (ENSGALG00010002848) #18 LPIN1 (ENSGALG00010002832) #19 GREB1 (ENSGALG00010002758) #21 E2F6 (ENSGALG00010002730) #22 ROCK2 (ENSGALG00010002706) #23 SLC66A3 (ENSGALG00010002673) #24 C2orf50 (ENSGALG00010002657) #25 KCNF1 (ENSGALG00010002644) #26 PDIA6 (ENSGALG00010002609) #27 ATP6V1C2 (ENSGALG00010002590) #29 NOL10 (ENSGALG00010003525) #30 ODC (ENSGALG00010003604) #31 HPCAL1 (ENSGALG00010002474) #32 RRM2 (ENSGALG00010002462) #33 KLF11 (ENSGALG00010002444) #34 GRHL1 (ENSGALG00010002433) #35 TAF1B (ENSGALG00010004230) #36 YWHAQ (ENSGALG00010003375) #37 ADAM17 (ENSGALG00010003348) Turkey MODERN SPECIES 11 TAF1B (ENSMGAG00000014006) #36 ENSMGAG00000014007 #35 ENSMGAG00000017891 #35 ENSMGAG00000014008 #34 ENSMGAG00000014009 #33 ENSMGAG00000014010 #32 ENSMGAG00000014011 #31 ENSMGAG00000020117 #30 ENSMGAG00000014012 #30 ENSMGAG00000014014 #27 ENSMGAG00000014013 #29 ENSMGAG00000015960 #26 ENSMGAG00000018364 #25 ENSMGAG00000019027 #24 ENSMGAG00000014017 #23 ENSMGAG00000014018 #22 ENSMGAG00000020485 #22 ENSMGAG00000017517 #21 ENSMGAG00000014020 #21 ENSMGAG00000021232 #19 ENSMGAG00000019262 ENSMGAG00000013970 PXDN (ENSMGAG00000013971) ENSMGAG00000020317 ENSMGAG00000017551 ENSMGAG00000013967 ALKAL2 (ENSMGAG00000013966) ENSMGAG00000013965 SH3YL1 (ENSMGAG00000013964) FAM110C (ENSMGAG00000018640) FBXO25 (ENSMGAG00000013963) Phasianidae ANCESTRAL SPECIES ENSGT00940000155734.bb #22 Phasianidae_b ANCESTRAL SPECIES ENSGT00940000155734.bb #22 Turkey MODERN SPECIES 11 ENSMGAG00000014007 #35 ENSMGAG00000017891 #35 ENSMGAG00000014008 #34 ENSMGAG00000014009 #33 ENSMGAG00000014010 #32 ENSMGAG00000014011 #31 ENSMGAG00000020117 #30 ENSMGAG00000014012 #30 ENSMGAG00000014014 #27 ENSMGAG00000014013 #29 ENSMGAG00000015960 #26 ENSMGAG00000018364 #25 ENSMGAG00000019027 #24 ENSMGAG00000014017 #23 ENSMGAG00000014018 #22 ENSMGAG00000020485 #22 ENSMGAG00000017517 #21 ENSMGAG00000014020 #21 ENSMGAG00000021232 #19 ENSMGAG00000019262 ENSMGAG00000013970 PXDN (ENSMGAG00000013971) ENSMGAG00000020317 ENSMGAG00000017551 ENSMGAG00000013967 ALKAL2 (ENSMGAG00000013966) ENSMGAG00000013965 SH3YL1 (ENSMGAG00000013964) FAM110C (ENSMGAG00000018640) FBXO25 (ENSMGAG00000013963) TDRP (ENSMGAG00000013962) Neognathae_b ANCESTRAL SPECIES 1 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Neognathae_c ANCESTRAL SPECIES 10 ENSGT00940000160181 ENSGT00940000155979 ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Golden eagle MODERN SPECIES 6 MSGN1 (ENSACCG00020011146) GEN1 (ENSACCG00020011155) SMC6 (ENSACCG00020011179) VSNL1 (ENSACCG00020011201) ENSACCG00020011205 CYRIA (ENSACCG00020011233) MYCN (ENSACCG00020011258) DDX1 (ENSACCG00020011276) NBAS (ENSACCG00020011318) LRATD1 (ENSACCG00020011362) ENSACCG00020011374 ENSACCG00020011382 TRIB2 (ENSACCG00020011397) #18 LPIN1 (ENSACCG00020011416) #19 GREB1 (ENSACCG00020011499) #21 E2F6 (ENSACCG00020011591) #22 ROCK2 (ENSACCG00020011682) #23 SLC66A3 (ENSACCG00020011809) #24 C2orf50 (ENSACCG00020011859) #25 KCNF1 (ENSACCG00020011878) #26 PDIA6 (ENSACCG00020011924) #27 ATP6V1C2 (ENSACCG00020012041) #29 NOL10 (ENSACCG00020012136) #30 ODC1 (ENSACCG00020012187) #31 HPCAL1 (ENSACCG00020012207) #32 RRM2 (ENSACCG00020012338) #33 KLF11 (ENSACCG00020012500) #34 ENSACCG00020012519 #35 TAF1B (ENSACCG00020012536) #36 YWHAQ (ENSACCG00020012565) #37 ADAM17 (ENSACCG00020012584) Kakapo MODERN SPECIES 23 NT5C1B (ENSSHBG00005009567) RDH14 (ENSSHBG00005009558) KCNS3 (ENSSHBG00005009545) MSGN1 (ENSSHBG00005009540) ENSSHBG00005009523 SMC6 (ENSSHBG00005009502) VSNL1 (ENSSHBG00005009485) CYRIA (ENSSHBG00005009457) MYCN (ENSSHBG00005009434) DDX1 (ENSSHBG00005009418) NBAS (ENSSHBG00005008111) LRATD1 (ENSSHBG00005007911) TRIB2 (ENSSHBG00005007893) #18 LPIN1 (ENSSHBG00005007857) #19 GREB1 (ENSSHBG00005007448) #21 E2F6 (ENSSHBG00005007355) #22 ENSSHBG00005007333 #23 ENSSHBG00005007299 #23 SLC66A3 (ENSSHBG00005007268) #24 C2orf50 (ENSSHBG00005007249) #25 KCNF1 (ENSSHBG00005007231) #26 PDIA6 (ENSSHBG00005007211) #27 ATP6V1C2 (ENSSHBG00005007157) #29 NOL10 (ENSSHBG00005007121) #30 ODC1 (ENSSHBG00005007026) #31 HPCAL1 (ENSSHBG00005007002) #32 RRM2 (ENSSHBG00005006975) #33 KLF11 (ENSSHBG00005006947) #34 ENSSHBG00005006922 #35 ENSSHBG00005006892 #35 TAF1B (ENSSHBG00005006841) #36 Passeriformes ANCESTRAL SPECIES 2 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 ENSGT00390000008069 Great tit MODERN SPECIES 22 RDH14 (ENSPMJG00000012483) KCNS3 (ENSPMJG00000012481) MSGN1 (ENSPMJG00000012480) GEN1 (ENSPMJG00000012479) SMC6 (ENSPMJG00000012478) VSNL1 (ENSPMJG00000012477) ENSPMJG00000012476 CYRIA (ENSPMJG00000012475) MYCN (ENSPMJG00000012473) DDX1 (ENSPMJG00000012469) NBAS (ENSPMJG00000012468) LRATD1 (ENSPMJG00000012465) TRIB2 (ENSPMJG00000012455) #18 LPIN1 (ENSPMJG00000012453) #19 GREB1 (ENSPMJG00000012451) #21 E2F6 (ENSPMJG00000012450) #22 ROCK2 (ENSPMJG00000012447) #23 SLC66A3 (ENSPMJG00000012442) #24 PDIA6 (ENSPMJG00000012436) #27 ATP6V1C2 (ENSPMJG00000012432) #29 NOL10 (ENSPMJG00000012429) #30 ODC1 (ENSPMJG00000012426) #31 HPCAL1 (ENSPMJG00000012424) #32 RRM2 (ENSPMJG00000012420) #33 KLF11 (ENSPMJG00000012416) #34 GRHL1 (ENSPMJG00000012412) #35 TAF1B (ENSPMJG00000012405) #36 YWHAQ (ENSPMJG00000012403) #37 ADAM17 (ENSPMJG00000012400) IAH1 (ENSPMJG00000012394) CPSF3 (ENSPMJG00000012393) Passeriformes_d ANCESTRAL SPECIES 2 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612.p #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 ENSGT00390000008069 Flycatcher DUPLICATION Flycatcher MODERN SPECIES 21 RDH14 (ENSFALG00000014908) KCNS3 (ENSFALG00000014929) MSGN1 (ENSFALG00000001820) GEN1 (ENSFALG00000027943) SMC6 (ENSFALG00000001824) VSNL1 (ENSFALG00000027644) ENSFALG00000001832 CYRIA (ENSFALG00000008685) ENSFALG00000028783 DDX1 (ENSFALG00000008696) NBAS (ENSFALG00000008699) LRATD1 (ENSFALG00000015040) TRIB2 (ENSFALG00000028332) #18 LPIN1 (ENSFALG00000006735) #19 GREB1 (ENSFALG00000006718) #21 ENSFALG00000026316 #22 ENSFALG00000027375 #22 ROCK2 (ENSFALG00000006707) #23 SLC66A3 (ENSFALG00000024817) #24 KCNF1 (ENSFALG00000014627) #26 PDIA6 (ENSFALG00000006683) #27 ATP6V1C2 (ENSFALG00000006666) #29 NOL10 (ENSFALG00000006658) #30 ODC1 (ENSFALG00000006656) #31 HPCAL1 (ENSFALG00000006653) #32 RRM2 (ENSFALG00000022902) #33 ENSFALG00000027922 KLF11 (ENSFALG00000006648) #34 GRHL1 (ENSFALG00000006639) #35 TAF1B (ENSFALG00000006636) #36 YWHAQ (ENSFALG00000023362) #37 Flycatcher MODERN SPECIES 21 KCNS3 (ENSFALG00000014929) MSGN1 (ENSFALG00000001820) GEN1 (ENSFALG00000027943) SMC6 (ENSFALG00000001824) VSNL1 (ENSFALG00000027644) ENSFALG00000001832 CYRIA (ENSFALG00000008685) ENSFALG00000028783 DDX1 (ENSFALG00000008696) NBAS (ENSFALG00000008699) LRATD1 (ENSFALG00000015040) TRIB2 (ENSFALG00000028332) #18 LPIN1 (ENSFALG00000006735) #19 GREB1 (ENSFALG00000006718) #21 ENSFALG00000026316 #22 ENSFALG00000027375 #22 ROCK2 (ENSFALG00000006707) #23 SLC66A3 (ENSFALG00000024817) #24 KCNF1 (ENSFALG00000014627) #26 PDIA6 (ENSFALG00000006683) #27 ATP6V1C2 (ENSFALG00000006666) #29 NOL10 (ENSFALG00000006658) #30 ODC1 (ENSFALG00000006656) #31 HPCAL1 (ENSFALG00000006653) #32 RRM2 (ENSFALG00000022902) #33 ENSFALG00000027922 KLF11 (ENSFALG00000006648) #34 GRHL1 (ENSFALG00000006639) #35 TAF1B (ENSFALG00000006636) #36 YWHAQ (ENSFALG00000023362) #37 ADAM17 (ENSFALG00000006611) Passeriformes_g ANCESTRAL SPECIES 1 ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000205825 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612.o #35 ENSGT00940000157612.p #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Medium ground finch DUPLICATION Medium ground finch MODERN SPECIES 21 NT5C1B (ENSGFOG00000010490) RDH14 (ENSGFOG00000010495) KCNS3 (ENSGFOG00000010498) GEN1 (ENSGFOG00000010501) SMC6 (ENSGFOG00000010514) VSNL1 (ENSGFOG00000010531) CYRIA (ENSGFOG00000010538) MYCN (ENSGFOG00000010546) DDX1 (ENSGFOG00000010553) NBAS (ENSGFOG00000010569) LRATD1 (ENSGFOG00000010589) TRIB2 (ENSGFOG00000010590) #18 LPIN1 (ENSGFOG00000005160) #19 GREB1 (ENSGFOG00000007462) #21 ENSGFOG00000007488 #22 ENSGFOG00000007490 #22 ROCK2 (ENSGFOG00000007498) #23 ENSGFOG00000007525 SLC66A3 (ENSGFOG00000007534) #24 KCNF1 (ENSGFOG00000007549) #26 PDIA6 (ENSGFOG00000007553) #27 ATP6V1C2 (ENSGFOG00000007570) #29 NOL10 (ENSGFOG00000007627) #30 ODC1 (ENSGFOG00000007655) #31 HPCAL1 (ENSGFOG00000007664) #32 RRM2 (ENSGFOG00000007690) #33 KLF11 (ENSGFOG00000007951) #34 ENSGFOG00000007956 #35 ENSGFOG00000007959 #35 TAF1B (ENSGFOG00000007971) #36 YWHAQ (ENSGFOG00000007990) #37 Medium ground finch MODERN SPECIES 21 OSR1 (ENSGFOG00000010486) NT5C1B (ENSGFOG00000010490) RDH14 (ENSGFOG00000010495) KCNS3 (ENSGFOG00000010498) GEN1 (ENSGFOG00000010501) SMC6 (ENSGFOG00000010514) VSNL1 (ENSGFOG00000010531) CYRIA (ENSGFOG00000010538) MYCN (ENSGFOG00000010546) DDX1 (ENSGFOG00000010553) NBAS (ENSGFOG00000010569) LRATD1 (ENSGFOG00000010589) TRIB2 (ENSGFOG00000010590) #18 LPIN1 (ENSGFOG00000005160) #19 GREB1 (ENSGFOG00000007462) #21 ENSGFOG00000007488 #22 ENSGFOG00000007490 #22 ROCK2 (ENSGFOG00000007498) #23 ENSGFOG00000007525 SLC66A3 (ENSGFOG00000007534) #24 KCNF1 (ENSGFOG00000007549) #26 PDIA6 (ENSGFOG00000007553) #27 ATP6V1C2 (ENSGFOG00000007570) #29 NOL10 (ENSGFOG00000007627) #30 ODC1 (ENSGFOG00000007655) #31 HPCAL1 (ENSGFOG00000007664) #32 RRM2 (ENSGFOG00000007690) #33 KLF11 (ENSGFOG00000007951) #34 ENSGFOG00000007956 #35 ENSGFOG00000007959 #35 TAF1B (ENSGFOG00000007971) #36 Passeroidea ANCESTRAL SPECIES ENSGT00940000155979 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00470000042500 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000205825 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612.o #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Common canary MODERN SPECIES 1 KCNS3 (ENSSCAG00000013262) MSGN1 (ENSSCAG00000013255) GEN1 (ENSSCAG00000013242) SMC6 (ENSSCAG00000013216) VSNL1 (ENSSCAG00000013204) ENSSCAG00000013192 CYRIA (ENSSCAG00000013175) ENSSCAG00000013165 MYCN (ENSSCAG00000013162) DDX1 (ENSSCAG00000013147) NBAS (ENSSCAG00000012763) LRATD1 (ENSSCAG00000012692) TRIB2 (ENSSCAG00000012687) #18 LPIN1 (ENSSCAG00000012667) #19 GREB1 (ENSSCAG00000012639) #21 E2F6 (ENSSCAG00000012631) #22 ROCK2 (ENSSCAG00000012610) #23 SLC66A3 (ENSSCAG00000012565) #24 KCNF1 (ENSSCAG00000012548) #26 PDIA6 (ENSSCAG00000012514) #27 ATP6V1C2 (ENSSCAG00000012422) #29 NOL10 (ENSSCAG00000012402) #30 ODC1 (ENSSCAG00000012395) #31 HPCAL1 (ENSSCAG00000012381) #32 RRM2 (ENSSCAG00000012371) #33 KLF11 (ENSSCAG00000012362) #34 GRHL1 (ENSSCAG00000012341) #35 YWHAQ (ENSSCAG00000012308) #37 ADAM17 (ENSSCAG00000012301) IAH1 (ENSSCAG00000012295) CPSF3 (ENSSCAG00000012290) Zebra finch MODERN SPECIES 23 ENSTGUG00000013124 MSGN1 (ENSTGUG00000013122) VSNL1 (ENSTGUG00000013109) GEN1 (ENSTGUG00000013117) SMC6 (ENSTGUG00000013110) ENSTGUG00000019456 CYRIA (ENSTGUG00000013106) MYCN (ENSTGUG00000013104) ENSTGUG00000027142 DDX1 (ENSTGUG00000013096) NBAS (ENSTGUG00000013092) LRATD1 (ENSTGUG00000013091) TRIB2 (ENSTGUG00000013089) #18 LPIN1 (ENSTGUG00000013085) #19 GREB1 (ENSTGUG00000013081) #21 ENSTGUG00000013076 #22 ROCK2 (ENSTGUG00000013067) #23 ENSTGUG00000023758 SLC66A3 (ENSTGUG00000026462) #24 PDIA6 (ENSTGUG00000013056) #27 ATP6V1C2 (ENSTGUG00000013053) #29 NOL10 (ENSTGUG00000013047) #30 ODC1 (ENSTGUG00000013045) #31 HPCAL1 (ENSTGUG00000013044) #32 RRM2 (ENSTGUG00000013042) #33 KLF11 (ENSTGUG00000013041) #34 GRHL1 (ENSTGUG00000013038) #35 TAF1B (ENSTGUG00000013037) #36 YWHAQ (ENSTGUG00000013035) #37 ADAM17 (ENSTGUG00000013028) IAH1 (ENSTGUG00000013025) Anura ANCESTRAL SPECIES 32 ENSGT00940000163503.B ENSGT00530000063712.a.b ENSGT00940000159266 ENSGT00550000074816.A.a ENSGT00940000156513 ENSGT00960000192062 ENSGT00390000015159.a.b ENSGT00940000158432 ENSGT00940000155678 ENSGT00390000012474 ENSGT00940000161165 ENSGT00950000182986.a.b.a #18 ENSGT00940000157219 #19 ENSGT01100000263518.A.a.a.b #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #29 ENSGT00390000007900 #30 ENSGT00950000182995.e.a.a.a #31 ENSGT00940000154645.A #32 ENSGT00390000013305.a.a #33 ENSGT00940000155982 #34 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Frog MODERN SPECIES 5 ENSXETG00000048120 cyria (ENSXETG00000015482) ENSXETG00000040643 mycn (ENSXETG00000015485) ddx1 (ENSXETG00000017825) ENSXETG00000034873 nbas (ENSXETG00000017826) ENSXETG00000045231 ENSXETG00000042956 lratd1 (ENSXETG00000012519) trib2 (ENSXETG00000039993) #18 ENSXETG00000043743 lpin1 (ENSXETG00000020970) #19 ntsr2 (ENSXETG00000037844) #20 greb1 (ENSXETG00000023793) #21 e2f6 (ENSXETG00000040751) #22 rock2 (ENSXETG00000023782) #23 slc66a3 (ENSXETG00000024438) #24 c2orf50 (ENSXETG00000023781) #25 ENSXETG00000041636 pgat (ENSXETG00000039468) KCNF1 (ENSXETG00000003508) #26 pdia6 (ENSXETG00000003512) #27 atp6v1c2 (ENSXETG00000003516) #29 nol10 (ENSXETG00000003518) #30 odc1 (ENSXETG00000003519) #31 hpcal1 (ENSXETG00000003521) #32 ENSXETG00000043226 rrm2.2 (ENSXETG00000036052) #33 MGC147302 (ENSXETG00000031276) klf11 (ENSXETG00000007013) #34 Leishan spiny toad MODERN SPECIES 7 ENSLLEG00000028933 ENSLLEG00000028924 NBAS (ENSLLEG00000027604) ENSLLEG00000027478 ENSLLEG00000027466 ENSLLEG00000027457 ENSLLEG00000027435 LRATD1 (ENSLLEG00000027413) TRIB2 (ENSLLEG00000027379) #18 ENSLLEG00000027356 ENSLLEG00000027325 LPIN1 (ENSLLEG00000027040) #19 NTSR2 (ENSLLEG00000026890) #20 ENSLLEG00000026867 GREB1 (ENSLLEG00000026131) #21 E2F6 (ENSLLEG00000026054) #22 ROCK2 (ENSLLEG00000024556) #23 SLC66A3 (ENSLLEG00000024404) #24 ENSLLEG00000024376 C2orf50 (ENSLLEG00000024331) #25 ENSLLEG00000024324 HPCAL1 (ENSLLEG00000024240) #32 ENSLLEG00000024218 ODC1 (ENSLLEG00000023958) #31 NOL10 (ENSLLEG00000023018) #30 ATP6V1C2 (ENSLLEG00000022849) #29 PDIA6 (ENSLLEG00000022642) #27 ENSLLEG00000022599 KCNF1 (ENSLLEG00000022578) #26 ENSLLEG00000022561 RNF144A (ENSLLEG00000022290) Coelacanth MODERN SPECIES 1675 E2F6 (ENSLACG00000003098) #22 ASAP2 (ENSLACG00000006201) ITGB1BP1 (ENSLACG00000008015) CPSF3 (ENSLACG00000008308) IAH1 (ENSLACG00000022480) ADAM17 (ENSLACG00000009394) ENSLACG00000010467