Gnathostomata ANCESTRAL SPECIES 162 ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464 ENSGT00940000156714 ENSGT01030000234564.a.a.a.a.b ENSGT00940000155734 #22 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.a ##37 ENSGT00440000033827 #36 ENSGT00940000157612 #35 ENSGT00940000155982 #33 Euteleostomi ANCESTRAL SPECIES 10 ENSGT00730000111137 ENSGT00390000002448 ENSGT00390000008195 ENSGT00390000003466 ENSGT00390000014122 ENSGT00940000159468 ENSGT00390000001793 ENSGT00940000161652 ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464 ENSGT00940000156714 ENSGT00940000173435 ENSGT01030000234564.a.a.a.a.b ENSGT00940000155734 #22 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.a ##37 ENSGT00440000033827 #36 ENSGT00940000157612 #35 ENSGT00940000155982 #33 ENSGT00390000013305.a.a #32 ENSGT00940000154645.A #31 ENSGT00950000182995.e.a.a.a #30 ENSGT00390000007900 #29 ENSGT00390000004263.b #28 Sarcopterygii ANCESTRAL SPECIES ENSGT00940000155734 #22 Tetrapoda ANCESTRAL SPECIES 4 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Amniota ANCESTRAL SPECIES 1 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Mammalia ANCESTRAL SPECIES 38 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Theria ANCESTRAL SPECIES 35 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Eutheria ANCESTRAL SPECIES 2 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Boreoeutheria ANCESTRAL SPECIES 15 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Euarchontoglires ANCESTRAL SPECIES 15 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Euarchontoglires_A ANCESTRAL SPECIES 14 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Glires ANCESTRAL SPECIES 13 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Rodentia ANCESTRAL SPECIES 15 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Rodentia_B ANCESTRAL SPECIES 14 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Kangaroo rat MODERN SPECIES 339 Rdh14 (ENSDORG00000019712) #7 Kcns3 (ENSDORG00000024097) #8 Msgn1 (ENSDORG00000003509) #9 Gen1 (ENSDORG00000010754) #10 Smc6 (ENSDORG00000010753) #11 Vsnl1 (ENSDORG00000024043) #12 ENSDORG00000026713 #13 Cyria (ENSDORG00000010274) #14 Mycn (ENSDORG00000009906) #15 Ddx1 (ENSDORG00000012847) #16 Nbas (ENSDORG00000012843) #17 Lratd1 (ENSDORG00000023584) #18 Trib2 (ENSDORG00000030161) #19 Lpin1 (ENSDORG00000010485) #20 Greb1 (ENSDORG00000009946) #21 E2f6 (ENSDORG00000013213) #22 Rock2 (ENSDORG00000008054) #23 Pqlc3 (ENSDORG00000025612) #24 ENSDORG00000027660 #25 Kcnf1 (ENSDORG00000026132) #26 Pdia6 (ENSDORG00000003594) #27 Atp6v1c2 (ENSDORG00000003593) #28 Nol10 (ENSDORG00000001331) #29 Odc1 (ENSDORG00000002669) #30 Hpcal1 (ENSDORG00000007055) #31 Rrm2 (ENSDORG00000002514) #32 ENSDORG00000024620 #33 ENSDORG00000024766 #34 ENSDORG00000028599 #35 Taf1b (ENSDORG00000010154) #36 ENSDORG00000028741 #37 Myomorpha ANCESTRAL SPECIES 24 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Lesser Egyptian jerboa MODERN SPECIES 123 Mycn (ENSJJAG00000012777) #15 Ddx1 (ENSJJAG00000013315) #16 Nbas (ENSJJAG00000017359) #17 Lratd1 (ENSJJAG00000013761) #18 ENSJJAG00000013963 ENSJJAG00000014823 ENSJJAG00000016404 ENSJJAG00000016696 #19 ENSJJAG00000012584 Lpin1 (ENSJJAG00000003641) #20 Ntsr2 (ENSJJAG00000010812) Greb1 (ENSJJAG00000018756) #21 E2f6 (ENSJJAG00000023699) #22 Rock2 (ENSJJAG00000000496) #23 ENSJJAG00000000353 Pqlc3 (ENSJJAG00000001428) #24 ENSJJAG00000003503 #25 Kcnf1 (ENSJJAG00000012515) #26 Pdia6 (ENSJJAG00000011060) #27 Atp6v1c2 (ENSJJAG00000011787) #28 Nol10 (ENSJJAG00000013166) #29 ENSJJAG00000013286 #30 Hpcal1 (ENSJJAG00000013350) #31 ENSJJAG00000013475 ##32 ENSJJAG00000012792 B3gnt5 (ENSJJAG00000012804) Taf1b (ENSJJAG00000015578) #36 Grhl1 (ENSJJAG00000018256) #35 Muroidea ANCESTRAL SPECIES 21 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Upper Galilee mountains blind mole rat MODERN SPECIES 1517 ENSNGAG00000020800 #17 Lratd1 (ENSNGAG00000021060) #18 Trib2 (ENSNGAG00000002186) #19 Lpin1 (ENSNGAG00000017494) #20 ENSNGAG00000008223 Greb1 (ENSNGAG00000019611) #21 E2f6 (ENSNGAG00000012686) #22 Rock2 (ENSNGAG00000019681) #23 Pqlc3 (ENSNGAG00000009941) #24 ENSNGAG00000011266 #25 Kcnf1 (ENSNGAG00000017575) #26 Pdia6 (ENSNGAG00000014585) #27 Atp6v1c2 (ENSNGAG00000000867) #28 Nol10 (ENSNGAG00000015506) #29 ENSNGAG00000019061 ENSNGAG00000001599 #30 Hpcal1 (ENSNGAG00000012465) #31 Rrm2 (ENSNGAG00000013008) ##32 Cys1 (ENSNGAG00000015080) Klf11 (ENSNGAG00000018758) #33 Grhl1 (ENSNGAG00000004562) #35 Taf1b (ENSNGAG00000010048) #36 Muroidea_A ANCESTRAL SPECIES 24 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Murinae ANCESTRAL SPECIES 8 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 Rat MODERN SPECIES 16 Smc6 (ENSRNOG00000004908) #11 Vsnl1 (ENSRNOG00000005345) #12 Rad51ap2 (ENSRNOG00000049271) AABR07072562.1 (ENSRNOG00000050653) Cyria (ENSRNOG00000052758) #14 LOC100360357 (ENSRNOG00000065320) Mycn (ENSRNOG00000051372) #15 ENSRNOG00000064235 Ddx1 (ENSRNOG00000006652) #16 Nbas (ENSRNOG00000024503) #17 Lratd1 (ENSRNOG00000004084) #18 Trib2 (ENSRNOG00000004110) #19 Lpin1 (ENSRNOG00000004377) #20 Ntsr2 (ENSRNOG00000049054) Greb1 (ENSRNOG00000024651) #21 E2f6 (ENSRNOG00000004449) #22 Rock2 (ENSRNOG00000004496) #23 Slc66a3 (ENSRNOG00000005126) #24 C6h2orf50 (ENSRNOG00000024338) #25 Kcnf1 (ENSRNOG00000024310) #26 Pdia6 (ENSRNOG00000050197) #27 Atp6v1c2 (ENSRNOG00000050553) #28 Nol10 (ENSRNOG00000005344) #29 AABR07063703.1 (ENSRNOG00000046279) Odc1 (ENSRNOG00000005424) #30 LOC120093238 (ENSRNOG00000032523) Hpcal1 (ENSRNOG00000005492) #31 Asap2 (ENSRNOG00000061519) Itgb1bp1 (ENSRNOG00000059402) Cpsf3 (ENSRNOG00000052418) Iah1 (ENSRNOG00000060853) Mus ANCESTRAL SPECIES 10 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.b.a.a ##37 Shrew mouse MODERN SPECIES 20 Kcns3 (MGP_PahariEiJ_G0029370) #8 Msgn1 (MGP_PahariEiJ_G0029371) #9 Gen1 (MGP_PahariEiJ_G0029372) #10 Smc6 (MGP_PahariEiJ_G0029373) #11 Vsnl1 (MGP_PahariEiJ_G0029374) #12 Rad51ap2 (MGP_PahariEiJ_G0029375) Cyria (MGP_PahariEiJ_G0029376) #14 Mycn (MGP_PahariEiJ_G0029377) #15 Ddx1 (MGP_PahariEiJ_G0029378) #16 Nbas (MGP_PahariEiJ_G0029379) #17 Lratd1 (MGP_PahariEiJ_G0029380) #18 Trib2 (MGP_PahariEiJ_G0029381) #19 Lpin1 (MGP_PahariEiJ_G0029382) #20 MGP_PahariEiJ_G0029383 Greb1 (MGP_PahariEiJ_G0029384) #21 E2f6 (MGP_PahariEiJ_G0029385) #22 MGP_PahariEiJ_G0029386 Rock2 (MGP_PahariEiJ_G0029387) #23 Pqlc3 (MGP_PahariEiJ_G0029388) #24 MGP_PahariEiJ_G0029389 #25 Kcnf1 (MGP_PahariEiJ_G0029390) #26 Pdia6 (MGP_PahariEiJ_G0029391) #27 Atp6v1c2 (MGP_PahariEiJ_G0029392) #28 Nol10 (MGP_PahariEiJ_G0029393) #29 Odc1 (MGP_PahariEiJ_G0029394) #30 Asap2 (MGP_PahariEiJ_G0029395) Itgb1bp1 (MGP_PahariEiJ_G0029396) Cpsf3 (MGP_PahariEiJ_G0029397) Iah1 (MGP_PahariEiJ_G0029398) Adam17 (MGP_PahariEiJ_G0029399) MGP_PahariEiJ_G0029400 ##37 Mus_A ANCESTRAL SPECIES 17 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.c #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.e #30 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.b.a.a ##37 Ryukyu mouse MODERN SPECIES 3 MGP_CAROLIEiJ_G0017614 Msgn1 (MGP_CAROLIEiJ_G0017615) #9 Gen1 (MGP_CAROLIEiJ_G0017616) #10 Smc6 (MGP_CAROLIEiJ_G0017617) #11 Vsnl1 (MGP_CAROLIEiJ_G0017618) #12 Rad51ap2 (MGP_CAROLIEiJ_G0017619) Cyria (MGP_CAROLIEiJ_G0017620) #14 Mycn (MGP_CAROLIEiJ_G0017621) #15 Ddx1 (MGP_CAROLIEiJ_G0017622) #16 Nbas (MGP_CAROLIEiJ_G0017623) #17 Lratd1 (MGP_CAROLIEiJ_G0017624) #18 Trib2 (MGP_CAROLIEiJ_G0017625) #19 Lpin1 (MGP_CAROLIEiJ_G0017626) #20 Ntsr2 (MGP_CAROLIEiJ_G0017627) Greb1 (MGP_CAROLIEiJ_G0017628) #21 MGP_CAROLIEiJ_G0017629 #22 Rock2 (MGP_CAROLIEiJ_G0017630) #23 MGP_CAROLIEiJ_G0017631 #24 MGP_CAROLIEiJ_G0017632 #25 Kcnf1 (MGP_CAROLIEiJ_G0017633) #26 Pdia6 (MGP_CAROLIEiJ_G0017634) #27 Atp6v1c2 (MGP_CAROLIEiJ_G0017635) #28 Nol10 (MGP_CAROLIEiJ_G0017636) #29 Odc1 (MGP_CAROLIEiJ_G0017637) #30 Asap2 (MGP_CAROLIEiJ_G0017638) Itgb1bp1 (MGP_CAROLIEiJ_G0017639) Cpsf3 (MGP_CAROLIEiJ_G0017640) Iah1 (MGP_CAROLIEiJ_G0017641) Adam17 (MGP_CAROLIEiJ_G0017642) Ywhaq (MGP_CAROLIEiJ_G0017643) ##37 Taf1b (MGP_CAROLIEiJ_G0017644) #36 Mus_B ANCESTRAL SPECIES 17 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.c #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.e #30 ENSGT00940000154645.A #31 ENSGT01060000248676 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 Mouse MODERN SPECIES 3 Kcns3 (ENSMUSG00000043673) #8 Msgn1 (ENSMUSG00000047002) #9 Gen1 (ENSMUSG00000051235) #10 Smc6 (ENSMUSG00000020608) #11 Vsnl1 (ENSMUSG00000054459) #12 Rad51ap2 (ENSMUSG00000086022) Cyria (ENSMUSG00000020589) #14 Mycn (ENSMUSG00000037169) #15 Ddx1 (ENSMUSG00000037149) #16 Nbas (ENSMUSG00000020576) #17 Lratd1 (ENSMUSG00000020607) #18 Trib2 (ENSMUSG00000020601) #19 Lpin1 (ENSMUSG00000020593) #20 Ntsr2 (ENSMUSG00000020591) Greb1 (ENSMUSG00000036523) #21 E2f6 (ENSMUSG00000057469) #22 Rock2 (ENSMUSG00000020580) #23 Pqlc3 (ENSMUSG00000045679) #24 2410004P03Rik (ENSMUSG00000071398) Kcnf1 (ENSMUSG00000051726) #26 Pdia6 (ENSMUSG00000020571) #27 Atp6v1c2 (ENSMUSG00000020566) #28 Nol10 (ENSMUSG00000061458) #29 Odc1 (ENSMUSG00000011179) #30 Hpcal1 (ENSMUSG00000071379) #31 5730507C01Rik (ENSMUSG00000073197) Gm21863 (ENSMUSG00000095470) Asap2 (ENSMUSG00000052632) Itgb1bp1 (ENSMUSG00000062352) Cpsf3 (ENSMUSG00000054309) Iah1 (ENSMUSG00000062054) Mus_C ANCESTRAL SPECIES 11 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.c #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.e #30 ENSGT00940000154645.A #31 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.b.a.a ##37 spretus MODERN SPECIES 3 Kcns3 (MGP_SPRETEiJ_G0018456) #8 Msgn1 (MGP_SPRETEiJ_G0018457) #9 Gen1 (MGP_SPRETEiJ_G0018458) #10 Smc6 (MGP_SPRETEiJ_G0018459) #11 Vsnl1 (MGP_SPRETEiJ_G0018460) #12 Rad51ap2 (MGP_SPRETEiJ_G0018461) Cyria (MGP_SPRETEiJ_G0018462) #14 Mycn (MGP_SPRETEiJ_G0018463) #15 Ddx1 (MGP_SPRETEiJ_G0018464) #16 Nbas (MGP_SPRETEiJ_G0018465) #17 Lratd1 (MGP_SPRETEiJ_G0018466) #18 Trib2 (MGP_SPRETEiJ_G0018467) #19 Lpin1 (MGP_SPRETEiJ_G0018468) #20 Ntsr2 (MGP_SPRETEiJ_G0018469) Greb1 (MGP_SPRETEiJ_G0018470) #21 E2f6 (MGP_SPRETEiJ_G0018471) #22 Rock2 (MGP_SPRETEiJ_G0018472) #23 MGP_SPRETEiJ_G0018473 #24 2410004P03Rik (MGP_SPRETEiJ_G0018474) Kcnf1 (MGP_SPRETEiJ_G0018475) #26 Pdia6 (MGP_SPRETEiJ_G0018476) #27 Atp6v1c2 (MGP_SPRETEiJ_G0018477) #28 Nol10 (MGP_SPRETEiJ_G0018478) #29 Asap2 (MGP_SPRETEiJ_G0018479) Itgb1bp1 (MGP_SPRETEiJ_G0018480) Cpsf3 (MGP_SPRETEiJ_G0018481) Iah1 (MGP_SPRETEiJ_G0018482) Adam17 (MGP_SPRETEiJ_G0018483) Ywhaq (MGP_SPRETEiJ_G0018484) ##37 Taf1b (MGP_SPRETEiJ_G0018485) #36 MGP_SPRETEiJ_G0018486 Steppe mouse MODERN SPECIES 80 Trib2 (ENSMSIG00000011506) #19 Lpin1 (ENSMSIG00000011530) #20 Ntsr2 (ENSMSIG00000011617) Greb1 (ENSMSIG00000011634) #21 E2f6 (ENSMSIG00000011903) #22 Rock2 (ENSMSIG00000011916) #23 ENSMSIG00000012001 Pqlc3 (ENSMSIG00000012026) #24 ENSMSIG00000012066 #25 Kcnf1 (ENSMSIG00000012076) #26 Pdia6 (ENSMSIG00000012089) #27 Atp6v1c2 (ENSMSIG00000012116) #28 Nol10 (ENSMSIG00000012486) #29 ENSMSIG00000012578 #30 Hpcal1 (ENSMSIG00000012615) #31 ENSMSIG00000012665 ENSMSIG00000012676 Cricetidae ANCESTRAL SPECIES 24 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Cricetinae ANCESTRAL SPECIES ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165.c #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.g #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Golden Hamster MODERN SPECIES 796 Lratd1 (ENSMAUG00000000064) #18 ENSMAUG00000000600 Trib2 (ENSMAUG00000000507) #19 Lpin1 (ENSMAUG00000017619) #20 Ntsr2 (ENSMAUG00000016529) Greb1 (ENSMAUG00000015451) #21 E2f6 (ENSMAUG00000014225) #22 ENSMAUG00000013207 #23 ENSMAUG00000015383 #23 Pqlc3 (ENSMAUG00000013741) #24 ENSMAUG00000013971 #25 Kcnf1 (ENSMAUG00000012316) #26 Pdia6 (ENSMAUG00000012881) #27 Atp6v1c2 (ENSMAUG00000012261) #28 Nol10 (ENSMAUG00000010862) #29 Hpcal1 (ENSMAUG00000010636) #31 Chinese hamster chok1gshd MODERN SPECIES 229 ENSCGRG00001019699 #10 Smc6 (ENSCGRG00001024287) #11 Vsnl1 (ENSCGRG00001017035) #12 ENSCGRG00001012128 Cyria (ENSCGRG00001014064) #14 Mycn (ENSCGRG00001018130) #15 Ddx1 (ENSCGRG00001013025) #16 Nbas (ENSCGRG00001001919) #17 ENSCGRG00001002169 #18 ENSCGRG00001013069 ENSCGRG00001013482 Trib2 (ENSCGRG00001024816) #19 Lpin1 (ENSCGRG00001000692) #20 Ntsr2 (ENSCGRG00001012327) Greb1 (ENSCGRG00001018970) #21 E2f6 (ENSCGRG00001013963) #22 Rock2 (ENSCGRG00001016725) #23 Pqlc3 (ENSCGRG00001018327) #24 2410004P03Rik (ENSCGRG00001003389) Kcnf1 (ENSCGRG00001014274) #26 Pdia6 (ENSCGRG00001017472) #27 Atp6v1c2 (ENSCGRG00001021615) #28 Nol10 (ENSCGRG00001009928) #29 ENSCGRG00001015979 #30 Hpcal1 (ENSCGRG00001023170) #31 Rrm2 (ENSCGRG00001007841) #32 Cys1 (ENSCGRG00001013951) Klf11 (ENSCGRG00001018478) #33 Grhl1 (ENSCGRG00001024970) #35 ENSCGRG00001018516 #36 Ywhaq (ENSCGRG00001024724) ##37 Cricetidae_B ANCESTRAL SPECIES 43 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Northern American deer mouse MODERN SPECIES 14 Gen1 (ENSPEMG00000001855) #10 ENSPEMG00000024461 #11 Vsnl1 (ENSPEMG00000028838) #12 ENSPEMG00000027568 Cyria (ENSPEMG00000025578) #14 Mycn (ENSPEMG00000014767) #15 ENSPEMG00000027724 Ddx1 (ENSPEMG00000016389) #16 Nbas (ENSPEMG00000000126) #17 Lratd1 (ENSPEMG00000027364) #18 ENSPEMG00000030202 Trib2 (ENSPEMG00000027972) #19 Lpin1 (ENSPEMG00000005628) #20 Ntsr2 (ENSPEMG00000007290) Greb1 (ENSPEMG00000020144) #21 E2f6 (ENSPEMG00000020192) #22 Rock2 (ENSPEMG00000020257) #23 Pqlc3 (ENSPEMG00000020282) #24 ENSPEMG00000025861 #25 Kcnf1 (ENSPEMG00000013250) #26 Pdia6 (ENSPEMG00000002821) #27 Atp6v1c2 (ENSPEMG00000007660) #28 Nol10 (ENSPEMG00000008676) #29 Hpcal1 (ENSPEMG00000025119) #31 Rrm2 (ENSPEMG00000010359) #32 Cys1 (ENSPEMG00000025881) Klf11 (ENSPEMG00000011311) #33 Grhl1 (ENSPEMG00000012157) #35 Taf1b (ENSPEMG00000013642) #36 ENSPEMG00000027877 #37 Adam17 (ENSPEMG00000015840) Prairie vole DUPLICATION Prairie vole MODERN SPECIES 93 Smc6 (ENSMOCG00000009440) #11 Vsnl1 (ENSMOCG00000000359) #12 Rad51ap2 (ENSMOCG00000012235) ENSMOCG00000002918 ENSMOCG00000004702 Cyria (ENSMOCG00000015524) #14 Mycn (ENSMOCG00000012273) #15 Ddx1 (ENSMOCG00000000257) #16 Nbas (ENSMOCG00000009751) #17 Lratd1 (ENSMOCG00000015863) #18 Trib2 (ENSMOCG00000006314) #19 ENSMOCG00000002531 Lpin1 (ENSMOCG00000014921) #20 Ntsr2 (ENSMOCG00000005558) Greb1 (ENSMOCG00000012442) #21 ENSMOCG00000019419 #22 Rock2 (ENSMOCG00000004291) #23 Pqlc3 (ENSMOCG00000020689) #24 2410004P03Rik (ENSMOCG00000005186) Kcnf1 (ENSMOCG00000002002) #26 Pdia6 (ENSMOCG00000014991) #27 Atp6v1c2 (ENSMOCG00000019580) #28 Nol10 (ENSMOCG00000021564) #29 ENSMOCG00000010314 #30 Hpcal1 (ENSMOCG00000014411) #31 ENSMOCG00000010909 #32 ENSMOCG00000018114 #32 Cys1 (ENSMOCG00000017656) ENSMOCG00000014995 #33 ENSMOCG00000003070 Grhl1 (ENSMOCG00000019210) #35 Prairie vole MODERN SPECIES Snx13 (ENSMOCG00000011768) ENSMOCG00000004201 Twist1 (ENSMOCG00000008957) Ferd3l (ENSMOCG00000006801) Polr1f (ENSMOCG00000003458) Efcab10 (ENSMOCG00000015759) Atxn7l1 (ENSMOCG00000001052) ENSMOCG00000008600 Cdhr3 (ENSMOCG00000012855) Sypl (ENSMOCG00000011672) Nampt (ENSMOCG00000007931) Pik3cg (ENSMOCG00000007687) Prkar2b (ENSMOCG00000013480) Hbp1 (ENSMOCG00000019227) Cog5 (ENSMOCG00000009102) ENSMOCG00000000934 #22 Gpr22 (ENSMOCG00000002304) ENSMOCG00000005050 Dus4l (ENSMOCG00000019344) Bcap29 (ENSMOCG00000002261) Slc26a4 (ENSMOCG00000022260) Cbll1 (ENSMOCG00000016689) Slc26a3 (ENSMOCG00000019595) Dld (ENSMOCG00000021009) Lamb1 (ENSMOCG00000014282) ENSMOCG00000017600 ENSMOCG00000019158 Cp (ENSMOCG00000016138) Hps3 (ENSMOCG00000010766) Hltf (ENSMOCG00000019747) Gyg (ENSMOCG00000013677) Rodentia_A DUPLICATION Rodentia_A ANCESTRAL SPECIES ENSGT00940000155734.p #22 Sciuridae ANCESTRAL SPECIES ENSGT00940000155734.p #22 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 156 USP27X (ENSSVLG00005017235) CLCN5 (ENSSVLG00005017046) AKAP4 (ENSSVLG00005016895) ENSSVLG00005016807 DGKK (ENSSVLG00005016570) SHROOM4 (ENSSVLG00005016405) BMP15 (ENSSVLG00005016372) NUDT10 (ENSSVLG00005016353) NUDT11 (ENSSVLG00005016221) ENSSVLG00005016209 ENSSVLG00005016195 ENSSVLG00005016175 GSPT2 (ENSSVLG00005016154) ENSSVLG00005016087 MAGED1 (ENSSVLG00005015981) ENSSVLG00005015906 #22 ENSSVLG00005015867 ENSSVLG00005015851 GPR173 (ENSSVLG00005015827) TSPYL2 (ENSSVLG00005015733) ENSSVLG00005015688 KANTR (ENSSVLG00005015675) KDM5C (ENSSVLG00005015304) IQSEC2 (ENSSVLG00005015113) ENSSVLG00005015050 SMC1A (ENSSVLG00005014765) RIBC1 (ENSSVLG00005014562) HSD17B10 (ENSSVLG00005014486) HUWE1 (ENSSVLG00005013657) PHF8 (ENSSVLG00005013001) FAM120C (ENSSVLG00005012884) Eurasian red squirrel MODERN SPECIES 153 ENSSVLG00005012612 #22 Marmotini ANCESTRAL SPECIES ENSGT00940000155734.p #22 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 158 ENSMMMG00000024247 #22 ENSMMMG00000024249 #22 ENSMMMG00000024252 Alpin marmot MODERN SPECIES 158 ENSMMMG00000024252 ENSMMMG00000024249 #22 ENSMMMG00000024247 #22 Marmotini_b ANCESTRAL SPECIES ENSGT00940000155734.p #22 Squirrel MODERN SPECIES 472 ENSSTOG00000000889 ENSSTOG00000022583 #22 ENSSTOG00000034082 Arctic ground squirrel MODERN SPECIES 1102 ENSUPAG00010000243 #22 Rodentia_A ANCESTRAL SPECIES 14 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.cb ##15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Hystricomorpha ANCESTRAL SPECIES 64 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00390000016845 ENSGT00390000013305.a.a.u.a ##32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Hystricomorpha_a ANCESTRAL SPECIES 70 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.b ##37 ENSGT01090000260040.b.b.b.b.a.a ##37 Hystricomorpha_b ANCESTRAL SPECIES 91 ENSGT00390000015159.a.b #14 ENSGT00940000158432.bb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000170593 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.u.a ##32 ENSGT00390000013305.a.a.v #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.b ##37 Degu DUPLICATION Degu MODERN SPECIES 82 CNKSR2 (ENSODEG00000014138) SMPX (ENSODEG00000013724) ENSODEG00000012861 MBTPS2 (ENSODEG00000013500) ENSODEG00000013775 ENSODEG00000020031 PHEX (ENSODEG00000012854) ENSODEG00000020024 ENSODEG00000014216 PTCHD1 (ENSODEG00000012754) ENSODEG00000013046 ENSODEG00000013721 ENSODEG00000012907 #22 PRDX4 (ENSODEG00000014100) ENSODEG00000012911 ENSODEG00000013771 ENSODEG00000014344 APOO (ENSODEG00000014624) KLHL15 (ENSODEG00000013753) ENSODEG00000014340 ENSODEG00000013609 ENSODEG00000014084 ZFX (ENSODEG00000012957) PDK3 (ENSODEG00000013024) PCYT1B (ENSODEG00000012646) ENSODEG00000013614 POLA1 (ENSODEG00000013021) ARX (ENSODEG00000013376) Degu MODERN SPECIES 192 ENSODEG00000000782 CYRIA (ENSODEG00000000749) #14 ENSODEG00000018616 ENSODEG00000018613 MYCN (ENSODEG00000000716) #15 DDX1 (ENSODEG00000000569) #16 ENSODEG00000000457 NBAS (ENSODEG00000003327) #17 ENSODEG00000003226 LRATD1 (ENSODEG00000003163) #18 TRIB2 (ENSODEG00000003153) #19 LPIN1 (ENSODEG00000003117) #20 GREB1 (ENSODEG00000002144) #21 ENSODEG00000001238 #22 ENSODEG00000001198 #23 ENSODEG00000001162 #23 ENSODEG00000000987 #24 ENSODEG00000000975 ENSODEG00000000842 #27 ATP6V1C2 (ENSODEG00000000754) #28 NOL10 (ENSODEG00000000508) #29 ODC1 (ENSODEG00000000437) #30 ENSODEG00000002415 #31 RRM2 (ENSODEG00000002317) ##32 ENSODEG00000002288 #33 GRHL1 (ENSODEG00000002151) #35 TAF1B (ENSODEG00000002052) #36 ENSODEG00000001535 YWHAQ (ENSODEG00000001504) ##37 Long-tailed chinchilla MODERN SPECIES 194 CYRIA (ENSCLAG00000007123) #14 MYCN (ENSCLAG00000006932) #15 DDX1 (ENSCLAG00000005434) #16 NBAS (ENSCLAG00000002538) #17 LRATD1 (ENSCLAG00000002355) #18 TRIB2 (ENSCLAG00000002309) #19 LPIN1 (ENSCLAG00000001810) #20 GREB1 (ENSCLAG00000005662) #21 E2F6 (ENSCLAG00000004863) #22 ROCK2 (ENSCLAG00000009471) #23 SLC66A3 (ENSCLAG00000008584) #24 ENSCLAG00000007661 KCNF1 (ENSCLAG00000017968) #26 PDIA6 (ENSCLAG00000006956) #27 ATP6V1C2 (ENSCLAG00000006612) #28 NOL10 (ENSCLAG00000002234) #29 ODC1 (ENSCLAG00000002140) #30 HPCAL1 (ENSCLAG00000002037) #31 ENSCLAG00000002025 RRM2 (ENSCLAG00000001926) #32 ENSCLAG00000004146 #33 GRHL1 (ENSCLAG00000004000) #35 TAF1B (ENSCLAG00000003776) #36 YWHAQ (ENSCLAG00000003576) ##37 Guinea pig MODERN SPECIES 125 ENSCPOG00000037178 #18 TRIB2 (ENSCPOG00000040411) #19 LPIN1 (ENSCPOG00000013546) #20 GREB1 (ENSCPOG00000006588) #21 E2F6 (ENSCPOG00000019385) #22 ROCK2 (ENSCPOG00000012664) #23 SLC66A3 (ENSCPOG00000031555) #24 C2orf50 (ENSCPOG00000034329) #25 KCNF1 (ENSCPOG00000015432) #26 PDIA6 (ENSCPOG00000010804) #27 ATP6V1C2 (ENSCPOG00000008738) #28 NOL10 (ENSCPOG00000007706) #29 ODC1 (ENSCPOG00000008476) #30 HPCAL1 (ENSCPOG00000034185) #31 RRM2 (ENSCPOG00000008652) #32 KLF11 (ENSCPOG00000025767) #33 GRHL1 (ENSCPOG00000010783) #35 Naked mole-rat female MODERN SPECIES 19 ENSHGLG00000000512 ADAM17 (ENSHGLG00000000502) ENSHGLG00000000473 ##37 ENSHGLG00000000328 ENSHGLG00000049295 ENSHGLG00000049886 #15 NBAS (ENSHGLG00000000885) #17 ENSHGLG00000047840 LRATD1 (ENSHGLG00000004468) #18 ENSHGLG00000005931 ENSHGLG00000001922 TRIB2 (ENSHGLG00000050246) #19 LPIN1 (ENSHGLG00000000436) #20 NTSR2 (ENSHGLG00000048775) ENSHGLG00000000910 #21 ENSHGLG00000004114 #22 ENSHGLG00000046079 SLC66A3 (ENSHGLG00000001582) #24 ENSHGLG00000001946 #25 ENSHGLG00000000514 #23 KCNF1 (ENSHGLG00000003808) #26 ENSHGLG00000050301 ENSHGLG00000047929 PDIA6 (ENSHGLG00000000403) #27 ATP6V1C2 (ENSHGLG00000001064) #28 NOL10 (ENSHGLG00000001564) #29 ENSHGLG00000000300 #30 HPCAL1 (ENSHGLG00000000540) #31 RRM2 (ENSHGLG00000000884) #32 ENSHGLG00000002385 KLF11 (ENSHGLG00000033218) #33 Sciuridae ANCESTRAL SPECIES 16 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.cb ##15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v.b #32 ENSGT00390000016845 ENSGT00940000155982.b #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Marmotini ANCESTRAL SPECIES 14 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.cb ##15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v.b #32 ENSGT00390000016845 ENSGT00940000155982.b #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Marmotini_b ANCESTRAL SPECIES 17 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.cb ##15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a.k #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734.q #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.v.b #32 ENSGT00940000155982.b #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.b #37 ENSGT00940000155443 Arctic ground squirrel MODERN SPECIES MSGN1 (ENSUPAG00010009556) #9 GEN1 (ENSUPAG00010009557) #10 SMC6 (ENSUPAG00010009564) #11 VSNL1 (ENSUPAG00010009655) #12 RAD51AP2 (ENSUPAG00010009663) CYRIA (ENSUPAG00010009668) #14 MYCN (ENSUPAG00010009702) ##15 ENSUPAG00010009708 DDX1 (ENSUPAG00010009711) #16 NBAS (ENSUPAG00010009750) #17 LRATD1 (ENSUPAG00010009896) #18 TRIB2 (ENSUPAG00010009911) #19 LPIN1 (ENSUPAG00010009943) #20 NTSR2 (ENSUPAG00010011106) GREB1 (ENSUPAG00010011107) #21 E2F6 (ENSUPAG00010011151) #22 ENSUPAG00010011160 ROCK2 (ENSUPAG00010011170) #23 SLC66A3 (ENSUPAG00010011204) #24 C2orf50 (ENSUPAG00010011218) #25 KCNF1 (ENSUPAG00010011227) #26 PDIA6 (ENSUPAG00010011237) #27 ATP6V1C2 (ENSUPAG00010011265) #28 NOL10 (ENSUPAG00010011386) #29 ODC1 (ENSUPAG00010011416) #30 HPCAL1 (ENSUPAG00010011428) #31 CYS1 (ENSUPAG00010011444) KLF11 (ENSUPAG00010011457) #33 GRHL1 (ENSUPAG00010011483) #35 TAF1B (ENSUPAG00010011508) #36 YWHAQ (ENSUPAG00010011534) ##37 Squirrel MODERN SPECIES 132 ENSSTOG00000002702 #19 LPIN1 (ENSSTOG00000010854) #20 NTSR2 (ENSSTOG00000010000) GREB1 (ENSSTOG00000026032) #21 E2F6 (ENSSTOG00000003316) #22 ROCK2 (ENSSTOG00000002624) #23 SLC66A3 (ENSSTOG00000027023) #24 C2orf50 (ENSSTOG00000002600) #25 PDIA6 (ENSSTOG00000005550) #27 ATP6V1C2 (ENSSTOG00000005527) #28 NOL10 (ENSSTOG00000005485) #29 ENSSTOG00000000386 #30 HPCAL1 (ENSSTOG00000001514) #31 ENSSTOG00000033669 #32 ENSSTOG00000030936 #33 GRHL1 (ENSSTOG00000019842) #35 TAF1B (ENSSTOG00000002419) #36 ENSSTOG00000024378 #37 ADAM17 (ENSSTOG00000004510) ENSSTOG00000004500 Alpin marmot MODERN SPECIES 6 KCNS3 (ENSMMMG00000022292) #8 MSGN1 (ENSMMMG00000022303) #9 GEN1 (ENSMMMG00000022304) #10 SMC6 (ENSMMMG00000022309) #11 VSNL1 (ENSMMMG00000022330) #12 RAD51AP2 (ENSMMMG00000022347) CYRIA (ENSMMMG00000022371) #14 ENSMMMG00000022385 ##15 ENSMMMG00000022387 ##15 DDX1 (ENSMMMG00000022392) #16 NBAS (ENSMMMG00000022403) #17 LRATD1 (ENSMMMG00000022451) #18 TRIB2 (ENSMMMG00000022461) #19 LPIN1 (ENSMMMG00000022468) #20 GREB1 (ENSMMMG00000022514) #21 E2F6 (ENSMMMG00000022544) #22 ROCK2 (ENSMMMG00000022550) #23 SLC66A3 (ENSMMMG00000022562) #24 C2orf50 (ENSMMMG00000022565) #25 KCNF1 (ENSMMMG00000022573) #26 PDIA6 (ENSMMMG00000022575) #27 ATP6V1C2 (ENSMMMG00000022583) #28 NOL10 (ENSMMMG00000022607) #29 ODC1 (ENSMMMG00000022615) #30 HPCAL1 (ENSMMMG00000022618) #31 ENSMMMG00000022624 #32 ENSMMMG00000022625 KLF11 (ENSMMMG00000022629) #33 GRHL1 (ENSMMMG00000022631) #35 TAF1B (ENSMMMG00000022638) #36 YWHAQ (ENSMMMG00000022652) ##37 Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 11 ENSSVLG00005000200 ENSSVLG00005000184 ENSSVLG00005000172 MKRN3 (ENSSVLG00005000160) MAGEL2 (ENSSVLG00005000130) NDN (ENSSVLG00005000123) ENSSVLG00005000097 ENSSVLG00005011846 ENSSVLG00005011795 SNURF (ENSSVLG00005011691) SNRPN (ENSSVLG00005011766) ENSSVLG00005011656 ENSSVLG00005011544 ENSSVLG00005011480 UBE3A (ENSSVLG00005011271) ENSSVLG00005011214 #22 ENSSVLG00005011189 ATP10A (ENSSVLG00005010147) GABRB3 (ENSSVLG00005009710) GABRA5 (ENSSVLG00005009605) GABRG3 (ENSSVLG00005009456) ENSSVLG00005009420 OCA2 (ENSSVLG00005009249) HERC2 (ENSSVLG00005008754) ENSSVLG00005008701 NIPA1 (ENSSVLG00005008682) ENSSVLG00005008620 CYFIP1 (ENSSVLG00005008475) TUBGCP5 (ENSSVLG00005008437) FAH (ENSSVLG00005008412) ZFAND6 (ENSSVLG00005008321) Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 71 ENSSVLG00005014067 ENSSVLG00005014131 #22 Eurasian red squirrel MODERN SPECIES 10 ENSSVLG00005014982 ENSSVLG00005014904 ENSSVLG00005014715 ENSSVLG00005014604 ENSSVLG00005014524 #22 ENSSVLG00005014484 ENSSVLG00005014452 ENSSVLG00005014399 ENSSVLG00005014356 ENSSVLG00005014214 ENSSVLG00005014121 ENSSVLG00005014073 ENSSVLG00005014042 ENSSVLG00005013904 ENSSVLG00005013793 ENSSVLG00005013731 ENSSVLG00005013708 ENSSVLG00005013669 ENSSVLG00005013626 ENSSVLG00005013547 Eurasian red squirrel MODERN SPECIES 70 ENSSVLG00005014037 #22 Eurasian red squirrel MODERN SPECIES 7 ENSSVLG00005023451 ENSSVLG00005023495 ENSSVLG00005023529 ENSSVLG00005023599 ENSSVLG00005023841 ENSSVLG00005024507 ENSSVLG00005024537 ENSSVLG00005024554 ENSSVLG00005024564 ENSSVLG00005024578 ENSSVLG00005024612 ENSSVLG00005024680 ENSSVLG00005024727 ENSSVLG00005024783 ENSSVLG00005024800 ENSSVLG00005024828 #22 ENSSVLG00005024837 ENSSVLG00005025145 ENSSVLG00005025508 Eurasian red squirrel MODERN SPECIES 5 VSNL1 (ENSSVLG00005025182) #12 RAD51AP2 (ENSSVLG00005025196) ENSSVLG00005025209 CYRIA (ENSSVLG00005025229) #14 ENSSVLG00005025253 ##15 ENSSVLG00005025265 DDX1 (ENSSVLG00005025306) #16 ENSSVLG00005025381 NBAS (ENSSVLG00005025400) #17 LRATD1 (ENSSVLG00005025440) #18 ENSSVLG00005016163 TRIB2 (ENSSVLG00005016251) #19 LPIN1 (ENSSVLG00005016318) #20 NTSR2 (ENSSVLG00005017070) GREB1 (ENSSVLG00005017159) #21 ENSSVLG00005017788 #22 ENSSVLG00005017989 ROCK2 (ENSSVLG00005018051) #23 SLC66A3 (ENSSVLG00005018165) #24 C2orf50 (ENSSVLG00005018240) #25 KCNF1 (ENSSVLG00005018274) #26 PDIA6 (ENSSVLG00005018305) #27 ATP6V1C2 (ENSSVLG00005018543) #28 ENSSVLG00005018931 NOL10 (ENSSVLG00005018977) #29 ENSSVLG00005019056 #30 HPCAL1 (ENSSVLG00005019176) #31 ENSSVLG00005019233 #32 CYS1 (ENSSVLG00005019295) KLF11 (ENSSVLG00005019337) #33 ENSSVLG00005019438 #35 Lagomorpha ANCESTRAL SPECIES 226 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 Pika MODERN SPECIES 3198 E2F6 (ENSOPRG00000003258) #22 Rabbit MODERN SPECIES 528 ENSOCUG00000027882 #21 E2F6 (ENSOCUG00000035534) #22 ROCK2 (ENSOCUG00000017477) #23 SLC66A3 (ENSOCUG00000022692) #24 KCNF1 (ENSOCUG00000008435) #26 PDIA6 (ENSOCUG00000012991) #27 ATP6V1C2 (ENSOCUG00000022981) #28 NOL10 (ENSOCUG00000016892) #29 ODC1 (ENSOCUG00000004925) #30 HPCAL1 (ENSOCUG00000024743) #31 RRM2 (ENSOCUG00000005820) #32 Tree shrew MODERN SPECIES 1544 ENSTBEG00000000331 E2F6 (ENSTBEG00000008180) #22 ROCK2 (ENSTBEG00000007626) #23 Primates ANCESTRAL SPECIES 14 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Strepsirrhini ANCESTRAL SPECIES 13 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Bushbaby DUPLICATION Bushbaby MODERN SPECIES 137 KCNS3 (ENSOGAG00000007336) #8 MSGN1 (ENSOGAG00000012569) #9 GEN1 (ENSOGAG00000004816) #10 SMC6 (ENSOGAG00000004809) #11 VSNL1 (ENSOGAG00000030574) #12 ENSOGAG00000031508 CYRIA (ENSOGAG00000009218) #14 MYCN (ENSOGAG00000010927) #15 DDX1 (ENSOGAG00000008730) #16 NBAS (ENSOGAG00000008723) #17 LRATD1 (ENSOGAG00000032892) #18 TRIB2 (ENSOGAG00000002490) #19 LPIN1 (ENSOGAG00000013620) #20 NTSR2 (ENSOGAG00000013618) GREB1 (ENSOGAG00000013608) #21 E2F6 (ENSOGAG00000013601) #22 ENSOGAG00000024515 ROCK2 (ENSOGAG00000009767) #23 SLC66A3 (ENSOGAG00000009765) #24 C2orf50 (ENSOGAG00000009762) #25 KCNF1 (ENSOGAG00000026918) #26 ENSOGAG00000033741 PDIA6 (ENSOGAG00000009751) #27 ATP6V1C2 (ENSOGAG00000009748) #28 NOL10 (ENSOGAG00000010494) #29 ENSOGAG00000033625 ENSOGAG00000001558 #30 HPCAL1 (ENSOGAG00000001557) #31 RRM2 (ENSOGAG00000007075) #32 ENSOGAG00000028490 KLF11 (ENSOGAG00000026035) #33 Bushbaby MODERN SPECIES 270 ENSOGAG00000024510 RADX (ENSOGAG00000007844) RNF128 (ENSOGAG00000012889) TBC1D8B (ENSOGAG00000012892) RIPPLY1 (ENSOGAG00000012901) CLDN2 (ENSOGAG00000012903) MORC4 (ENSOGAG00000013272) RBM41 (ENSOGAG00000009280) ENSOGAG00000024080 ENSOGAG00000028636 ENSOGAG00000029340 #22 DNAAF6 (ENSOGAG00000008183) FRMPD3 (ENSOGAG00000024885) ENSOGAG00000012070 ENSOGAG00000032050 MID2 (ENSOGAG00000010878) ENSOGAG00000033241 ENSOGAG00000010882 VSIG1 (ENSOGAG00000006414) ENSOGAG00000006419 ATG4A (ENSOGAG00000006422) COL4A6 (ENSOGAG00000015466) COL4A5 (ENSOGAG00000015475) ENSOGAG00000031230 IRS4 (ENSOGAG00000032032) GUCY2F (ENSOGAG00000011569) Lemuriformes ANCESTRAL SPECIES 23 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Lemuriformes_a ANCESTRAL SPECIES 10 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Greater bamboo lemur MODERN SPECIES 339 GEN1 (ENSPSMG00000007525) #10 SMC6 (ENSPSMG00000007622) #11 VSNL1 (ENSPSMG00000007643) #12 RAD51AP2 (ENSPSMG00000007652) ENSPSMG00000007660 CYRIA (ENSPSMG00000007716) #14 ENSPSMG00000007732 ENSPSMG00000007742 #15 DDX1 (ENSPSMG00000007970) #16 NBAS (ENSPSMG00000008335) #17 LRATD1 (ENSPSMG00000008472) #18 TRIB2 (ENSPSMG00000008501) #19 LPIN1 (ENSPSMG00000008652) #20 NTSR2 (ENSPSMG00000008712) GREB1 (ENSPSMG00000008813) #21 E2F6 (ENSPSMG00000008847) #22 Coquerels sifaka MODERN SPECIES 422 TRIB2 (ENSPCOG00000018790) #19 LPIN1 (ENSPCOG00000019468) #20 NTSR2 (ENSPCOG00000027931) GREB1 (ENSPCOG00000012601) #21 ENSPCOG00000023501 ENSPCOG00000025479 #22 ROCK2 (ENSPCOG00000017423) #23 SLC66A3 (ENSPCOG00000012606) #24 C2orf50 (ENSPCOG00000015622) #25 KCNF1 (ENSPCOG00000022385) #26 PDIA6 (ENSPCOG00000024183) #27 ATP6V1C2 (ENSPCOG00000017434) #28 NOL10 (ENSPCOG00000024792) #29 ENSPCOG00000013163 #30 Mouse lemur MODERN SPECIES 30 ENSMICG00000029479 #8 GEN1 (ENSMICG00000026479) #10 SMC6 (ENSMICG00000010802) #11 VSNL1 (ENSMICG00000036354) #12 RAD51AP2 (ENSMICG00000038023) CYRIA (ENSMICG00000013924) #14 MYCN (ENSMICG00000013903) #15 DDX1 (ENSMICG00000001023) #16 NBAS (ENSMICG00000001009) #17 ENSMICG00000036925 LRATD1 (ENSMICG00000042880) #18 TRIB2 (ENSMICG00000031869) #19 LPIN1 (ENSMICG00000017709) #20 NTSR2 (ENSMICG00000017708) GREB1 (ENSMICG00000017707) #21 E2F6 (ENSMICG00000017705) #22 ENSMICG00000028029 ROCK2 (ENSMICG00000037673) #23 KCNF1 (ENSMICG00000017370) #26 ENSMICG00000017368 #27 ATP6V1C2 (ENSMICG00000017366) #28 NOL10 (ENSMICG00000004805) #29 ENSMICG00000012511 #30 HPCAL1 (ENSMICG00000029256) #31 ENSMICG00000012789 #32 CYS1 (ENSMICG00000027772) KLF11 (ENSMICG00000012761) #33 GRHL1 (ENSMICG00000012737) #35 TAF1B (ENSMICG00000012714) #36 SLC66A3 (ENSMICG00000043387) #24 ENSMICG00000045104 #25 Haplorrhini ANCESTRAL SPECIES 15 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Tarsier MODERN SPECIES 2455 GREB1 (ENSTSYG00000001231) #21 E2F6 (ENSTSYG00000014568) #22 Simiiformes ANCESTRAL SPECIES 14 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Platyrrhini ANCESTRAL SPECIES 45 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.e #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.y.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Cebidae ANCESTRAL SPECIES 40 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.f #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.y.a.b #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Cebidae_a ANCESTRAL SPECIES 46 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00390000003897.s.b.a.b.a.a ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B.f #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.y.a.b #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Capuchin MODERN SPECIES 1 VSNL1 (ENSCCAG00000027421) #12 RAD51AP2 (ENSCCAG00000024012) ENSCCAG00000027131 CYRIA (ENSCCAG00000019373) #14 MYCN (ENSCCAG00000036405) #15 ENSCCAG00000033245 ENSCCAG00000032936 DDX1 (ENSCCAG00000030085) #16 NBAS (ENSCCAG00000028087) #17 ENSCCAG00000024507 LRATD1 (ENSCCAG00000019002) #18 TRIB2 (ENSCCAG00000013010) #19 LPIN1 (ENSCCAG00000030095) #20 NTSR2 (ENSCCAG00000036768) GREB1 (ENSCCAG00000024488) #21 E2F6 (ENSCCAG00000023406) #22 ROCK2 (ENSCCAG00000024293) #23 SLC66A3 (ENSCCAG00000023484) #24 C2orf50 (ENSCCAG00000027477) #25 KCNF1 (ENSCCAG00000022210) #26 PDIA6 (ENSCCAG00000028275) #27 ATP6V1C2 (ENSCCAG00000034767) #28 NOL10 (ENSCCAG00000027373) #29 ODC1 (ENSCCAG00000021928) #30 HPCAL1 (ENSCCAG00000020323) #31 ENSCCAG00000009364 #32 CYS1 (ENSCCAG00000028829) KLF11 (ENSCCAG00000026312) #33 GRHL1 (ENSCCAG00000022259) #35 TAF1B (ENSCCAG00000031135) #36 YWHAQ (ENSCCAG00000031746) ##37 Bolivian squirrel monkey MODERN SPECIES 63 TDRD3 (ENSSBOG00000022790) PCDH20 (ENSSBOG00000022134) PCDH9 (ENSSBOG00000023648) ENSSBOG00000029606 ENSSBOG00000030129 KLHL1 (ENSSBOG00000019967) ENSSBOG00000020963 LRATD1 (ENSSBOG00000015385) #18 ENSSBOG00000025853 TRIB2 (ENSSBOG00000024296) #19 ENSSBOG00000021652 ENSSBOG00000033442 LPIN1 (ENSSBOG00000030601) #20 NTSR2 (ENSSBOG00000024980) GREB1 (ENSSBOG00000026787) #21 E2F6 (ENSSBOG00000032095) #22 ROCK2 (ENSSBOG00000026163) #23 SLC66A3 (ENSSBOG00000021893) #24 C2orf50 (ENSSBOG00000027050) #25 KCNF1 (ENSSBOG00000032364) #26 PDIA6 (ENSSBOG00000016573) #27 ATP6V1C2 (ENSSBOG00000020727) #28 NOL10 (ENSSBOG00000025651) #29 ODC1 (ENSSBOG00000034688) #30 HPCAL1 (ENSSBOG00000026513) #31 ENSSBOG00000022360 #32 KLF11 (ENSSBOG00000018899) #33 GRHL1 (ENSSBOG00000011486) #35 TAF1B (ENSSBOG00000028943) #36 ENSSBOG00000033831 #37 ADAM17 (ENSSBOG00000035331) Marmoset MODERN SPECIES 5 GEN1 (ENSCJAG00000007327) #10 SMC6 (ENSCJAG00000007282) #11 VSNL1 (ENSCJAG00000002578) #12 RAD51AP2 (ENSCJAG00000007262) CYRIA (ENSCJAG00000043048) #14 MYCN (ENSCJAG00000039364) #15 ENSCJAG00000064948 DDX1 (ENSCJAG00000007076) #16 NBAS (ENSCJAG00000007028) #17 LRATD1 (ENSCJAG00000046159) #18 TRIB2 (ENSCJAG00000046267) #19 ENSCJAG00000021005 LPIN1 (ENSCJAG00000006976) #20 NTSR2 (ENSCJAG00000006958) GREB1 (ENSCJAG00000006946) #21 E2F6 (ENSCJAG00000006910) #22 ROCK2 (ENSCJAG00000006805) #23 SLC66A3 (ENSCJAG00000044173) #24 C2orf50 (ENSCJAG00000079383) #25 KCNF1 (ENSCJAG00000022930) #26 PDIA6 (ENSCJAG00000006694) #27 ATP6V1C2 (ENSCJAG00000006660) #28 NOL10 (ENSCJAG00000006602) #29 ODC1 (ENSCJAG00000006576) #30 HPCAL1 (ENSCJAG00000041528) #31 ENSCJAG00000006533 #32 KLF11 (ENSCJAG00000046813) #33 GRHL1 (ENSCJAG00000006431) #35 TAF1B (ENSCJAG00000006420) #36 YWHAQ (ENSCJAG00000040849) ##37 ENSCJAG00000062528 Mas night monkey MODERN SPECIES 1339 RAD51AP2 (ENSANAG00000027176) CYRIA (ENSANAG00000031083) #14 MYCN (ENSANAG00000027525) #15 ENSANAG00000027938 DDX1 (ENSANAG00000037912) #16 NBAS (ENSANAG00000021700) #17 ENSANAG00000026719 ENSANAG00000034033 LRATD1 (ENSANAG00000010804) #18 ENSANAG00000027894 TRIB2 (ENSANAG00000029484) #19 ENSANAG00000006352 LPIN1 (ENSANAG00000028949) #20 NTSR2 (ENSANAG00000037146) GREB1 (ENSANAG00000024688) #21 E2F6 (ENSANAG00000036636) #22 ROCK2 (ENSANAG00000028355) #23 ENSANAG00000021692 #24 C2orf50 (ENSANAG00000036655) #25 KCNF1 (ENSANAG00000036777) #26 PDIA6 (ENSANAG00000012637) #27 ENSANAG00000027269 #28 NOL10 (ENSANAG00000024937) #29 ODC1 (ENSANAG00000036668) #30 HPCAL1 (ENSANAG00000033383) #31 ENSANAG00000025761 #32 KLF11 (ENSANAG00000028728) #33 GRHL1 (ENSANAG00000025191) #35 TAF1B (ENSANAG00000031526) #36 YWHAQ (ENSANAG00000026145) ##37 ADAM17 (ENSANAG00000037496) Catarrhini ANCESTRAL SPECIES 17 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00910000148193 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Hominoidea ANCESTRAL SPECIES 18 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424.a ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00910000148193 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a.b ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 Hominidae ANCESTRAL SPECIES 19 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424.a ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a.b ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 Homo/Pan/Gorilla group ANCESTRAL SPECIES 18 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00950000183424.a ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00910000146844.b ENSGT00390000001347.vb.a.b.b.a.a ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a.b ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Gorilla MODERN SPECIES 14 ENSGGOG00000038621 FAM49A (ENSGGOG00000001230) #14 MYCN (ENSGGOG00000005130) #15 ENSGGOG00000041173 ENSGGOG00000043697 DDX1 (ENSGGOG00000012482) #16 NBAS (ENSGGOG00000009226) #17 ENSGGOG00000040876 LRATD1 (ENSGGOG00000039574) #18 TRIB2 (ENSGGOG00000036149) #19 ENSGGOG00000043716 ENSGGOG00000043612 LPIN1 (ENSGGOG00000005901) #20 NTSR2 (ENSGGOG00000023490) GREB1 (ENSGGOG00000000115) #21 E2F6 (ENSGGOG00000028171) #22 ENSGGOG00000004964 #23 SLC66A3 (ENSGGOG00000001548) #24 C2orf50 (ENSGGOG00000043829) #25 ENSGGOG00000039303 KCNF1 (ENSGGOG00000009528) #26 PDIA6 (ENSGGOG00000002278) #27 ATP6V1C2 (ENSGGOG00000002273) #28 NOL10 (ENSGGOG00000034826) #29 ODC1 (ENSGGOG00000007991) #30 HPCAL1 (ENSGGOG00000007141) #31 RRM2 (ENSGGOG00000040108) #32 ENSGGOG00000027524 KLF11 (ENSGGOG00000012494) #33 GRHL1 (ENSGGOG00000002692) #35 TAF1B (ENSGGOG00000002685) #36 Homo/Pan group ANCESTRAL SPECIES 14 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00910000146844.b ENSGT00390000001347.vb.a.b.b.a.a ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Pan ANCESTRAL SPECIES 17 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00910000146844.b ENSGT00390000001347.vb.a.b.b.a.a ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00950000183087.A.a.b.a.g.b.a.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Bonobo MODERN SPECIES 14 VSNL1 (ENSPPAG00000032929) #12 RAD51AP2 (ENSPPAG00000041865) ENSPPAG00000027462 CYRIA (ENSPPAG00000041134) #14 ENSPPAG00000037839 #15 DDX1 (ENSPPAG00000027432) #16 NBAS (ENSPPAG00000031915) #17 ENSPPAG00000015747 LRATD1 (ENSPPAG00000000774) #18 TRIB2 (ENSPPAG00000032342) #19 ENSPPAG00000028638 ENSPPAG00000012981 LPIN1 (ENSPPAG00000032292) #20 ENSPPAG00000037510 GREB1 (ENSPPAG00000030021) #21 E2F6 (ENSPPAG00000036538) #22 ENSPPAG00000036122 ROCK2 (ENSPPAG00000038618) #23 SLC66A3 (ENSPPAG00000026752) #24 C2orf50 (ENSPPAG00000042216) #25 KCNF1 (ENSPPAG00000042656) #26 PDIA6 (ENSPPAG00000028754) #27 ATP6V1C2 (ENSPPAG00000028894) #28 NOL10 (ENSPPAG00000010631) #29 ODC1 (ENSPPAG00000004476) #30 HPCAL1 (ENSPPAG00000032513) #31 RRM2 (ENSPPAG00000040070) #32 ENSPPAG00000010181 KLF11 (ENSPPAG00000030099) #33 GRHL1 (ENSPPAG00000030977) #35 TAF1B (ENSPPAG00000031684) #36 Chimpanzee MODERN SPECIES 14 ENSPTRG00000006456 CYRIA (ENSPTRG00000011673) #14 ENSPTRG00000046661 MYCN (ENSPTRG00000011672) #15 MYCNOS (ENSPTRG00000042767) DDX1 (ENSPTRG00000011670) #16 NBAS (ENSPTRG00000011668) #17 ENSPTRG00000052334 LRATD1 (ENSPTRG00000046886) #18 TRIB2 (ENSPTRG00000011666) #19 ENSPTRG00000047057 ENSPTRG00000051961 LPIN1 (ENSPTRG00000011665) #20 NTSR2 (ENSPTRG00000011664) GREB1 (ENSPTRG00000022786) #21 E2F6 (ENSPTRG00000011661) #22 ROCK2 (ENSPTRG00000011658) #23 SLC66A3 (ENSPTRG00000011657) #24 C2AH2orf50 (ENSPTRG00000011656) #25 KCNF1 (ENSPTRG00000030563) #26 PDIA6 (ENSPTRG00000011653) #27 ATP6V1C2 (ENSPTRG00000011652) #28 NOL10 (ENSPTRG00000011651) #29 ODC1 (ENSPTRG00000011650) #30 HPCAL1 (ENSPTRG00000011649) #31 RRM2 (ENSPTRG00000042985) #32 CYS1 (ENSPTRG00000030565) ENSPTRG00000046195 KLF11 (ENSPTRG00000011645) #33 GRHL1 (ENSPTRG00000011643) #35 TAF1B (ENSPTRG00000011642) #36 Human MODERN SPECIES 11 KCNS3 (ENSG00000170745) #8 MSGN1 (ENSG00000151379) #9 GEN1 (ENSG00000178295) #10 SMC6 (ENSG00000163029) #11 VSNL1 (ENSG00000163032) #12 RAD51AP2 (ENSG00000214842) CYRIA (ENSG00000197872) #14 MYCN (ENSG00000134323) #15 DDX1 (ENSG00000079785) #16 NBAS (ENSG00000151779) #17 LRATD1 (ENSG00000162981) #18 TRIB2 (ENSG00000071575) #19 LPIN1 (ENSG00000134324) #20 NTSR2 (ENSG00000169006) GREB1 (ENSG00000196208) #21 E2F6 (ENSG00000169016) #22 ROCK2 (ENSG00000134318) #23 SLC66A3 (ENSG00000162976) #24 C2orf50 (ENSG00000150873) #25 KCNF1 (ENSG00000162975) #26 PDIA6 (ENSG00000143870) #27 ATP6V1C2 (ENSG00000143882) #28 NOL10 (ENSG00000115761) #29 ODC1 (ENSG00000115758) #30 HPCAL1 (ENSG00000115756) #31 RRM2 (ENSG00000171848) #32 CYS1 (ENSG00000205795) KLF11 (ENSG00000172059) #33 GRHL1 (ENSG00000134317) #35 TAF1B (ENSG00000115750) #36 YWHAQ (ENSG00000134308) ##37 Orangutan MODERN SPECIES 14 GEN1 (ENSPPYG00000012629) #10 SMC6 (ENSPPYG00000012630) #11 VSNL1 (ENSPPYG00000012631) #12 RAD51AP2 (ENSPPYG00000012632) CYRIA (ENSPPYG00000012634) #14 ENSPPYG00000038333 MYCN (ENSPPYG00000012635) #15 DDX1 (ENSPPYG00000012638) #16 NBAS (ENSPPYG00000012639) #17 ENSPPYG00000030484 LRATD1 (ENSPPYG00000012640) #18 TRIB2 (ENSPPYG00000038287) #19 LPIN1 (ENSPPYG00000012643) #20 NTSR2 (ENSPPYG00000012644) GREB1 (ENSPPYG00000012645) #21 E2F6 (ENSPPYG00000036394) #22 ROCK2 (ENSPPYG00000012647) #23 SLC66A3 (ENSPPYG00000012648) #24 C2orf50 (ENSPPYG00000012710) #25 KCNF1 (ENSPPYG00000041457) #26 PDIA6 (ENSPPYG00000012651) #27 ATP6V1C2 (ENSPPYG00000012652) #28 NOL10 (ENSPPYG00000012653) #29 ODC1 (ENSPPYG00000012654) #30 HPCAL1 (ENSPPYG00000012655) #31 RRM2 (ENSPPYG00000012656) #32 CYS1 (ENSPPYG00000012657) KLF11 (ENSPPYG00000012659) #33 GRHL1 (ENSPPYG00000012661) #35 TAF1B (ENSPPYG00000012662) #36 YWHAQ (ENSPPYG00000012663) ##37 Gibbon MODERN SPECIES 9 SMC6 (ENSNLEG00000001569) #11 VSNL1 (ENSNLEG00000001537) #12 RAD51AP2 (ENSNLEG00000001524) CYRIA (ENSNLEG00000001413) #14 ENSNLEG00000031164 ENSNLEG00000014496 #15 DDX1 (ENSNLEG00000014417) #16 NBAS (ENSNLEG00000014272) #17 ENSNLEG00000018294 ENSNLEG00000014270 #18 TRIB2 (ENSNLEG00000014260) #19 ENSNLEG00000028139 LPIN1 (ENSNLEG00000014196) #20 NTSR2 (ENSNLEG00000014189) GREB1 (ENSNLEG00000014178) #21 E2F6 (ENSNLEG00000014134) #22 ENSNLEG00000018147 ROCK2 (ENSNLEG00000014043) #23 SLC66A3 (ENSNLEG00000014031) #24 C2orf50 (ENSNLEG00000014028) #25 KCNF1 (ENSNLEG00000019349) #26 PDIA6 (ENSNLEG00000013916) #27 ATP6V1C2 (ENSNLEG00000013902) #28 NOL10 (ENSNLEG00000013851) #29 ODC1 (ENSNLEG00000013820) #30 HPCAL1 (ENSNLEG00000013802) #31 RRM2 (ENSNLEG00000035605) #32 ENSNLEG00000031728 ENSNLEG00000031300 KLF11 (ENSNLEG00000013701) #33 GRHL1 (ENSNLEG00000013634) #35 Cercopithecidae ANCESTRAL SPECIES 18 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00910000148193 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00910000147526 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 Rhinopithecus ANCESTRAL SPECIES 174 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00390000003682.ib.b.c.a.a ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00910000147526 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Golden snub-nosed monkey MODERN SPECIES 2175 NTSR2 (ENSRROG00000027868) GREB1 (ENSRROG00000032452) #21 E2F6 (ENSRROG00000038559) #22 ROCK2 (ENSRROG00000034982) #23 SLC66A3 (ENSRROG00000037932) #24 C2orf50 (ENSRROG00000036464) #25 ENSRROG00000039195 KCNF1 (ENSRROG00000034842) #26 PDIA6 (ENSRROG00000040359) #27 ATP6V1C2 (ENSRROG00000039206) #28 ENSRROG00000029320 NOL10 (ENSRROG00000043208) #29 ENSRROG00000045795 #30 HPCAL1 (ENSRROG00000033182) #31 RRM2 (ENSRROG00000041328) #32 KLF11 (ENSRROG00000041608) #33 GRHL1 (ENSRROG00000028348) #35 TAF1B (ENSRROG00000024712) #36 Black snub-nosed monkey MODERN SPECIES 147 TRIB2 (ENSRBIG00000014477) #19 LPIN1 (ENSRBIG00000000079) #20 NTSR2 (ENSRBIG00000029349) GREB1 (ENSRBIG00000042507) #21 E2F6 (ENSRBIG00000039075) #22 ROCK2 (ENSRBIG00000044675) #23 SLC66A3 (ENSRBIG00000030849) #24 C2orf50 (ENSRBIG00000034453) #25 KCNF1 (ENSRBIG00000044334) #26 PDIA6 (ENSRBIG00000031454) #27 ENSRBIG00000035043 ATP6V1C2 (ENSRBIG00000031961) #28 NOL10 (ENSRBIG00000043507) #29 ENSRBIG00000000544 #30 HPCAL1 (ENSRBIG00000034017) #31 RRM2 (ENSRBIG00000033258) #32 KLF11 (ENSRBIG00000037952) #33 GRHL1 (ENSRBIG00000024539) #35 TAF1B (ENSRBIG00000028101) #36 YWHAQ (ENSRBIG00000023381) ##37 Cercopithecinae ANCESTRAL SPECIES 17 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00910000148193 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00910000147526 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Cercopithecinae_a ANCESTRAL SPECIES 17 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00910000148107 ENSGT00950000182986.a.b.a #19 ENSGT00910000148193 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00910000147526 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.x #32 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 Macaca ANCESTRAL SPECIES 17 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00950000183424 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00770000121715 ENSGT00940000161165 #18 ENSGT00910000148107 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00910000147526 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 Pig-tailed macaque MODERN SPECIES 127 ENSMNEG00000033454 CYRIA (ENSMNEG00000035773) #14 MYCN (ENSMNEG00000034331) #15 ENSMNEG00000005879 ENSMNEG00000005027 ENSMNEG00000020096 DDX1 (ENSMNEG00000029189) #16 NBAS (ENSMNEG00000045342) #17 ENSMNEG00000039198 LRATD1 (ENSMNEG00000027054) #18 ENSMNEG00000013637 TRIB2 (ENSMNEG00000033803) #19 LPIN1 (ENSMNEG00000029714) #20 NTSR2 (ENSMNEG00000030048) GREB1 (ENSMNEG00000031259) #21 E2F6 (ENSMNEG00000032994) #22 ROCK2 (ENSMNEG00000044195) #23 SLC66A3 (ENSMNEG00000044841) #24 C2orf50 (ENSMNEG00000037338) #25 KCNF1 (ENSMNEG00000039841) #26 PDIA6 (ENSMNEG00000030894) #27 ATP6V1C2 (ENSMNEG00000037515) #28 ENSMNEG00000038801 NOL10 (ENSMNEG00000039685) #29 ODC1 (ENSMNEG00000043400) #30 HPCAL1 (ENSMNEG00000033423) #31 RRM2 (ENSMNEG00000028272) #32 CYS1 (ENSMNEG00000030186) ENSMNEG00000018854 KLF11 (ENSMNEG00000034723) #33 GRHL1 (ENSMNEG00000030598) #35 Macaca_a ANCESTRAL SPECIES 15 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000153294.m.a.d.e ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 Crab-eating macaque MODERN SPECIES 4 VSNL1 (ENSMFAG00000063922) #12 RAD51AP2 (ENSMFAG00000002803) CYRIA (ENSMFAG00000030486) #14 MYCN (ENSMFAG00000032784) #15 ENSMFAG00000052602 DDX1 (ENSMFAG00000033987) #16 NBAS (ENSMFAG00000003823) #17 LRATD1 (ENSMFAG00000027588) #18 ENSMFAG00000047890 TRIB2 (ENSMFAG00000042686) #19 LPIN1 (ENSMFAG00000035872) #20 ENSMFAG00000064291 NTSR2 (ENSMFAG00000043071) ENSMFAG00000044386 #21 ENSMFAG00000050503 #21 E2F6 (ENSMFAG00000044687) #22 ROCK2 (ENSMFAG00000043366) #23 SLC66A3 (ENSMFAG00000034193) #24 C2orf50 (ENSMFAG00000032471) #25 KCNF1 (ENSMFAG00000041973) #26 PDIA6 (ENSMFAG00000037618) #27 ATP6V1C2 (ENSMFAG00000032936) #28 NOL10 (ENSMFAG00000041289) #29 ENSMFAG00000038147 #30 HPCAL1 (ENSMFAG00000044146) #31 RRM2 (ENSMFAG00000040783) #32 ENSMFAG00000052007 KLF11 (ENSMFAG00000039490) #33 GRHL1 (ENSMFAG00000032356) #35 TAF1B (ENSMFAG00000041401) #36 ENSMFAG00000004741 ##37 Rhesus MODERN SPECIES 4 VSNL1 (ENSMMUG00000040529) #12 RAD51AP2 (ENSMMUG00000058011) CYRIA (ENSMMUG00000020385) #14 MYCN (ENSMMUG00000052363) #15 ENSMMUG00000052644 DDX1 (ENSMMUG00000023437) #16 NBAS (ENSMMUG00000023434) #17 LRATD1 (ENSMMUG00000004215) #18 ENSMMUG00000059746 ENSMMUG00000060624 TRIB2 (ENSMMUG00000038615) #19 ENSMMUG00000062508 LPIN1 (ENSMMUG00000021672) #20 NTSR2 (ENSMMUG00000020250) GREB1 (ENSMMUG00000020249) #21 E2F6 (ENSMMUG00000023225) #22 ROCK2 (ENSMMUG00000016678) #23 SLC66A3 (ENSMMUG00000022785) #24 C13H2orf50 (ENSMMUG00000064867) #25 ENSMMUG00000059454 PDIA6 (ENSMMUG00000012864) #27 ATP6V1C2 (ENSMMUG00000010320) #28 NOL10 (ENSMMUG00000010671) #29 ODC1 (ENSMMUG00000020441) #30 HPCAL1 (ENSMMUG00000020440) #31 ENSMMUG00000053871 RRM2 (ENSMMUG00000002057) #32 CYS1 (ENSMMUG00000030941) KLF11 (ENSMMUG00000002054) #33 GRHL1 (ENSMMUG00000001535) #35 TAF1B (ENSMMUG00000001530) #36 Cercopithecinae_b ANCESTRAL SPECIES 15 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00910000148107 ENSGT00950000182986.a.b.a #19 ENSGT00910000148193 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00910000147526 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.x #32 ENSGT00940000163505.b.b.b.b.b ENSGT00390000013305.a.a.w.a #32 ENSGT00390000016845 ENSGT00860000136202 Olive baboon MODERN SPECIES 5 RAD51AP2 (ENSPANG00000022532) ENSPANG00000050326 CYRIA (ENSPANG00000008636) #14 ENSPANG00000029967 ENSPANG00000032256 #15 DDX1 (ENSPANG00000025185) #16 NBAS (ENSPANG00000018551) #17 LRATD1 (ENSPANG00000018765) #18 ENSPANG00000044900 ENSPANG00000050237 ENSPANG00000047167 TRIB2 (ENSPANG00000005636) #19 LPIN1 (ENSPANG00000009989) #20 NTSR2 (ENSPANG00000017335) GREB1 (ENSPANG00000015589) #21 E2F6 (ENSPANG00000015289) #22 ENSPANG00000041240 ROCK2 (ENSPANG00000016385) #23 SLC66A3 (ENSPANG00000024078) #24 C2orf50 (ENSPANG00000005249) #25 KCNF1 (ENSPANG00000015920) #26 PDIA6 (ENSPANG00000006258) #27 ATP6V1C2 (ENSPANG00000017189) #28 NOL10 (ENSPANG00000006259) #29 ENSPANG00000011223 #30 HPCAL1 (ENSPANG00000042769) #31 ENSPANG00000044848 RRM2 (ENSPANG00000018767) #32 CYS1 (ENSPANG00000005251) ENSPANG00000031829 GRHL1 (ENSPANG00000020814) #35 Cercopithecinae_d ANCESTRAL SPECIES 23 ENSGT01020000230346.C.c.a.a.b ENSGT00390000015159.a.b #14 ENSGT00950000183424 ENSGT00940000158432 #15 ENSGT00950000185147 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00910000148107 ENSGT00950000182986.a.b.a #19 ENSGT00910000148193 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00910000147526 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.bb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a.x #32 ENSGT00390000016845 ENSGT00860000136202 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Drill MODERN SPECIES 1452 TRIB2 (ENSMLEG00000036327) #19 ENSMLEG00000014001 LPIN1 (ENSMLEG00000036857) #20 NTSR2 (ENSMLEG00000027903) GREB1 (ENSMLEG00000042035) #21 E2F6 (ENSMLEG00000031126) #22 ROCK2 (ENSMLEG00000029001) #23 SLC66A3 (ENSMLEG00000003286) #24 C2orf50 (ENSMLEG00000038536) #25 PDIA6 (ENSMLEG00000033930) #27 ATP6V1C2 (ENSMLEG00000028199) #28 ENSMLEG00000033772 NOL10 (ENSMLEG00000011854) #29 ODC1 (ENSMLEG00000039068) #30 HPCAL1 (ENSMLEG00000039247) #31 ENSMLEG00000035635 #32 ENSMLEG00000042927 KLF11 (ENSMLEG00000036570) #33 GRHL1 (ENSMLEG00000036453) #35 TAF1B (ENSMLEG00000043999) #36 YWHAQ (ENSMLEG00000030005) ##37 Sooty mangabey MODERN SPECIES 542 RAD51AP2 (ENSCATG00000035523) ENSCATG00000043417 CYRIA (ENSCATG00000004720) #14 ENSCATG00000003592 MYCN (ENSCATG00000041172) #15 ENSCATG00000019609 ENSCATG00000014658 DDX1 (ENSCATG00000033924) #16 NBAS (ENSCATG00000042904) #17 LRATD1 (ENSCATG00000021787) #18 ENSCATG00000020884 TRIB2 (ENSCATG00000017155) #19 LPIN1 (ENSCATG00000039834) #20 NTSR2 (ENSCATG00000042424) GREB1 (ENSCATG00000041583) #21 E2F6 (ENSCATG00000018212) #22 ROCK2 (ENSCATG00000043380) #23 SLC66A3 (ENSCATG00000005712) #24 C2orf50 (ENSCATG00000029297) #25 KCNF1 (ENSCATG00000016717) #26 PDIA6 (ENSCATG00000036674) #27 ATP6V1C2 (ENSCATG00000033228) #28 NOL10 (ENSCATG00000043643) #29 ODC1 (ENSCATG00000032048) #30 HPCAL1 (ENSCATG00000041723) #31 Vervet Monkey DUPLICATION Vervet Monkey MODERN SPECIES 5 GEN1 (ENSCSAG00000007952) #10 SMC6 (ENSCSAG00000007925) #11 VSNL1 (ENSCSAG00000007914) #12 RAD51AP2 (ENSCSAG00000007907) CYRIA (ENSCSAG00000007902) #14 MYCN (ENSCSAG00000007889) #15 DDX1 (ENSCSAG00000007883) #16 NBAS (ENSCSAG00000007763) #17 ENSCSAG00000000376 LRATD1 (ENSCSAG00000000375) #18 TRIB2 (ENSCSAG00000007539) #19 LPIN1 (ENSCSAG00000007534) #20 NTSR2 (ENSCSAG00000007519) ENSCSAG00000007503 #21 ENSCSAG00000007494 #21 E2F6 (ENSCSAG00000007487) #22 ROCK2 (ENSCSAG00000007439) #23 SLC66A3 (ENSCSAG00000007311) #24 C2orf50 (ENSCSAG00000007293) #25 KCNF1 (ENSCSAG00000000374) #26 PDIA6 (ENSCSAG00000007282) #27 ATP6V1C2 (ENSCSAG00000007259) #28 NOL10 (ENSCSAG00000007229) #29 ENSCSAG00000007220 #30 HPCAL1 (ENSCSAG00000007213) #31 RRM2 (ENSCSAG00000007201) #32 ENSCSAG00000007172 CYS1 (ENSCSAG00000007167) KLF11 (ENSCSAG00000007163) #33 GRHL1 (ENSCSAG00000007158) #35 TAF1B (ENSCSAG00000007150) #36 Vervet Monkey MODERN SPECIES 203 ATP11C (ENSCSAG00000007354) MCF2 (ENSCSAG00000007411) F9 (ENSCSAG00000007436) ENSCSAG00000007441 ZIC3 (ENSCSAG00000007453) ENSCSAG00000007461 GPR101 (ENSCSAG00000000292) ARHGEF6 (ENSCSAG00000007469) CD40LG (ENSCSAG00000007485) VGLL1 (ENSCSAG00000007498) HTATSF1 (ENSCSAG00000007505) BRS3 (ENSCSAG00000007512) ADGRG4 (ENSCSAG00000007537) MAP7D3 (ENSCSAG00000007557) FHL1 (ENSCSAG00000007563) ENSCSAG00000000293 #22 SLC9A6 (ENSCSAG00000007621) ENSCSAG00000007631 ENSCSAG00000007640 SAGE1 (ENSCSAG00000007665) ENSCSAG00000007682 INTS6L (ENSCSAG00000007686) ZNF449 (ENSCSAG00000007689) ZNF75D (ENSCSAG00000007702) ENSCSAG00000007710 ENSCSAG00000007720 ENSCSAG00000000294 RTL8C (ENSCSAG00000000295) ENSCSAG00000007729 SMIM10 (ENSCSAG00000000296) MOSPD1 (ENSCSAG00000007738) Laurasiatheria ANCESTRAL SPECIES 13 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Laurasiatheria_a ANCESTRAL SPECIES 17 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Laurasiatheria_b ANCESTRAL SPECIES 17 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Laurasiatheria_c ANCESTRAL SPECIES 14 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Equus ANCESTRAL SPECIES 7 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00910000146982 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT01090000263232 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Donkey MODERN SPECIES 26 MSGN1 (ENSEASG00005009364) #9 GEN1 (ENSEASG00005023619) #10 SMC6 (ENSEASG00005009355) #11 VSNL1 (ENSEASG00005026430) #12 RAD51AP2 (ENSEASG00005009350) CYRIA (ENSEASG00005009344) #14 MYCN (ENSEASG00005037158) #15 DDX1 (ENSEASG00005009335) #16 NBAS (ENSEASG00005008385) #17 LRATD1 (ENSEASG00005026394) #18 ENSEASG00005008260 TRIB2 (ENSEASG00005008257) #19 LPIN1 (ENSEASG00005008245) #20 NTSR2 (ENSEASG00005008238) GREB1 (ENSEASG00005008223) #21 E2F6 (ENSEASG00005008212) #22 ROCK2 (ENSEASG00005005236) #23 ENSEASG00005034683 #24 C2orf50 (ENSEASG00005004947) #25 KCNF1 (ENSEASG00005027361) #26 PDIA6 (ENSEASG00005004942) #27 ATP6V1C2 (ENSEASG00005004932) #28 NOL10 (ENSEASG00005004919) #29 ENSEASG00005004910 #30 HPCAL1 (ENSEASG00005004903) #31 RRM2 (ENSEASG00005004892) #32 CYS1 (ENSEASG00005025190) KLF11 (ENSEASG00005004881) #33 GRHL1 (ENSEASG00005028173) #35 TAF1B (ENSEASG00005004803) #36 YWHAQ (ENSEASG00005004792) ##37 Horse MODERN SPECIES 6 RAD51AP2 (ENSECAG00000014706) CYRIA (ENSECAG00000014952) #14 ENSECAG00000018361 MYCN (ENSECAG00000002896) #15 ENSECAG00000037590 DDX1 (ENSECAG00000016396) #16 NBAS (ENSECAG00000016641) #17 LRATD1 (ENSECAG00000027835) #18 ENSECAG00000007860 ENSECAG00000038530 ENSECAG00000050817 TRIB2 (ENSECAG00000010405) #19 LPIN1 (ENSECAG00000011239) #20 NTSR2 (ENSECAG00000016454) GREB1 (ENSECAG00000018308) #21 E2F6 (ENSECAG00000023944) #22 ROCK2 (ENSECAG00000009872) #23 ENSECAG00000053488 SLC66A3 (ENSECAG00000020784) #24 C15H2orf50 (ENSECAG00000022456) #25 KCNF1 (ENSECAG00000002935) #26 PDIA6 (ENSECAG00000022717) #27 ATP6V1C2 (ENSECAG00000010555) #28 NOL10 (ENSECAG00000015177) #29 ODC1 (ENSECAG00000022690) #30 HPCAL1 (ENSECAG00000040270) #31 RRM2 (ENSECAG00000007464) #32 CYS1 (ENSECAG00000039359) KLF11 (ENSECAG00000015820) #33 GRHL1 (ENSECAG00000015969) #35 TAF1B (ENSECAG00000023244) #36 Chiroptera ANCESTRAL SPECIES 10 ENSGT00940000160181 #7 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Megabat MODERN SPECIES 1118 GREB1 (ENSPVAG00000008656) #21 E2F6 (ENSPVAG00000008652) #22 ROCK2 (ENSPVAG00000008634) #23 SLC66A3 (ENSPVAG00000008630) #24 ENSPVAG00000008626 Microchiroptera ANCESTRAL SPECIES 14 ENSGT00940000160181 #7 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Greater horseshoe bat MODERN SPECIES 4 KCNS3 (ENSRFEG00010006076) #8 MSGN1 (ENSRFEG00010006094) #9 GEN1 (ENSRFEG00010006120) #10 SMC6 (ENSRFEG00010006174) #11 VSNL1 (ENSRFEG00010006243) #12 RAD51AP2 (ENSRFEG00010006267) CYRIA (ENSRFEG00010006289) #14 MYCN (ENSRFEG00010006325) #15 DDX1 (ENSRFEG00010006410) #16 NBAS (ENSRFEG00010006665) #17 LRATD1 (ENSRFEG00010006783) #18 ENSRFEG00010006807 TRIB2 (ENSRFEG00010006836) #19 LPIN1 (ENSRFEG00010006930) #20 GREB1 (ENSRFEG00010007141) #21 E2F6 (ENSRFEG00010007627) #22 ROCK2 (ENSRFEG00010007837) #23 SLC66A3 (ENSRFEG00010008070) #24 C2orf50 (ENSRFEG00010008148) #25 KCNF1 (ENSRFEG00010008182) #26 PDIA6 (ENSRFEG00010008218) #27 ATP6V1C2 (ENSRFEG00010008402) #28 NOL10 (ENSRFEG00010008527) #29 ODC1 (ENSRFEG00010008653) #30 HPCAL1 (ENSRFEG00010008686) #31 ENSRFEG00010008723 #32 CYS1 (ENSRFEG00010008838) KLF11 (ENSRFEG00010008867) #33 GRHL1 (ENSRFEG00010008922) #35 ENSRFEG00010009191 TAF1B (ENSRFEG00010009242) #36 Microbat DUPLICATION Microbat MODERN SPECIES 958 LIMS1 (ENSMLUG00000028983) ENSMLUG00000027119 GCC2 (ENSMLUG00000000182) ENSMLUG00000026848 ACAD9 (ENSMLUG00000017155) IQSEC1 (ENSMLUG00000001338) NUP210 (ENSMLUG00000008874) HDAC11 (ENSMLUG00000017293) FBLN2 (ENSMLUG00000007277) WNT7A (ENSMLUG00000015639) GK5 (ENSMLUG00000022492) XRN1 (ENSMLUG00000016885) ATR (ENSMLUG00000016908) PLS1 (ENSMLUG00000006680) TRPC1 (ENSMLUG00000014535) ENSMLUG00000029109 #22 PCOLCE2 (ENSMLUG00000008514) PAQR9 (ENSMLUG00000002919) ENSMLUG00000002920 CHST2 (ENSMLUG00000017249) ENSMLUG00000006765 SLC9A9 (ENSMLUG00000014324) ENSMLUG00000029377 DIPK2A (ENSMLUG00000002662) Microbat MODERN SPECIES 1345 GREB1 (ENSMLUG00000000221) #21 ENSMLUG00000003384 #22 ROCK2 (ENSMLUG00000015664) #23 SLC66A3 (ENSMLUG00000015653) #24 PDIA6 (ENSMLUG00000012215) #27 ATP6V1C2 (ENSMLUG00000012207) #28 NOL10 (ENSMLUG00000012309) #29 ENSMLUG00000010423 #30 RRM2 (ENSMLUG00000010596) #32 KLF11 (ENSMLUG00000002295) #33 GRHL1 (ENSMLUG00000002290) #35 TAF1B (ENSMLUG00000002273) #36 YWHAQ (ENSMLUG00000005383) ##37 ADAM17 (ENSMLUG00000010676) IAH1 (ENSMLUG00000010667) CPSF3 (ENSMLUG00000010636) ITGB1BP1 (ENSMLUG00000010629) Carnivora ANCESTRAL SPECIES 19 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Felidae ANCESTRAL SPECIES 3 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Panthera ANCESTRAL SPECIES 2 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Panthera_a ANCESTRAL SPECIES 1 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 leopard MODERN SPECIES KCNS3 (ENSPPRG00000020060) #8 ENSPPRG00000020962 MSGN1 (ENSPPRG00000020043) #9 GEN1 (ENSPPRG00000020921) #10 SMC6 (ENSPPRG00000020812) #11 VSNL1 (ENSPPRG00000020771) #12 RAD51AP2 (ENSPPRG00000020727) CYRIA (ENSPPRG00000020692) #14 MYCN (ENSPPRG00000020616) #15 DDX1 (ENSPPRG00000020556) #16 NBAS (ENSPPRG00000020146) #17 LRATD1 (ENSPPRG00000020023) #18 TRIB2 (ENSPPRG00000019893) #19 LPIN1 (ENSPPRG00000019764) #20 GREB1 (ENSPPRG00000019270) #21 E2F6 (ENSPPRG00000018702) #22 ROCK2 (ENSPPRG00000018610) #23 SLC66A3 (ENSPPRG00000018314) #24 C2orf50 (ENSPPRG00000018217) #25 KCNF1 (ENSPPRG00000020006) #26 PDIA6 (ENSPPRG00000018159) #27 ATP6V1C2 (ENSPPRG00000018018) #28 NOL10 (ENSPPRG00000017868) #29 ODC1 (ENSPPRG00000017534) #30 HPCAL1 (ENSPPRG00000017486) #31 ENSPPRG00000017433 #31 RRM2 (ENSPPRG00000017387) #32 KLF11 (ENSPPRG00000017354) #33 GRHL1 (ENSPPRG00000017279) #35 TAF1B (ENSPPRG00000017125) #36 YWHAQ (ENSPPRG00000017069) ##37 lion MODERN SPECIES 3 MSGN1 (ENSPLOG00000004343) #9 GEN1 (ENSPLOG00000004334) #10 SMC6 (ENSPLOG00000004301) #11 VSNL1 (ENSPLOG00000004292) #12 RAD51AP2 (ENSPLOG00000004282) CYRIA (ENSPLOG00000004262) #14 ENSPLOG00000004254 MYCN (ENSPLOG00000004251) #15 DDX1 (ENSPLOG00000004218) #16 NBAS (ENSPLOG00000004024) #17 LRATD1 (ENSPLOG00000003961) #18 TRIB2 (ENSPLOG00000003954) #19 LPIN1 (ENSPLOG00000003864) #20 ENSPLOG00000003731 GREB1 (ENSPLOG00000003614) #21 E2F6 (ENSPLOG00000003470) #22 ROCK2 (ENSPLOG00000003439) #23 SLC66A3 (ENSPLOG00000003412) #24 C2orf50 (ENSPLOG00000003392) #25 KCNF1 (ENSPLOG00000003383) #26 PDIA6 (ENSPLOG00000003350) #27 ATP6V1C2 (ENSPLOG00000003251) #28 NOL10 (ENSPLOG00000003174) #29 ODC1 (ENSPLOG00000003104) #30 HPCAL1 (ENSPLOG00000003090) #31 RRM2 (ENSPLOG00000003069) #32 CYS1 (ENSPLOG00000003056) KLF11 (ENSPLOG00000003042) #33 GRHL1 (ENSPLOG00000002984) #35 TAF1B (ENSPLOG00000002921) #36 ENSPLOG00000002895 Tiger MODERN SPECIES 148 LPIN1 (ENSPTIG00000013089) #20 ENSPTIG00000013027 #21 ENSPTIG00000012980 #21 E2F6 (ENSPTIG00000012937) #22 ROCK2 (ENSPTIG00000012860) #23 ENSPTIG00000012846 #24 C2orf50 (ENSPTIG00000012798) #25 PDIA6 (ENSPTIG00000012679) #27 ATP6V1C2 (ENSPTIG00000012594) #28 NOL10 (ENSPTIG00000012456) #29 Cat MODERN SPECIES 2 KCNS3 (ENSFCAG00000014253) #8 MSGN1 (ENSFCAG00000045777) #9 GEN1 (ENSFCAG00000013581) #10 SMC6 (ENSFCAG00000013578) #11 VSNL1 (ENSFCAG00000023416) #12 RAD51AP2 (ENSFCAG00000028900) CYRIA (ENSFCAG00000004125) #14 MYCN (ENSFCAG00000043374) #15 ENSFCAG00000048673 DDX1 (ENSFCAG00000004680) #16 NBAS (ENSFCAG00000004675) #17 LRATD1 (ENSFCAG00000030598) #18 TRIB2 (ENSFCAG00000035828) #19 LPIN1 (ENSFCAG00000008518) #20 GREB1 (ENSFCAG00000008510) #21 E2F6 (ENSFCAG00000011952) #22 ROCK2 (ENSFCAG00000024216) #23 SLC66A3 (ENSFCAG00000014335) #24 CA3H2orf50 (ENSFCAG00000044685) #25 KCNF1 (ENSFCAG00000031035) #26 PDIA6 (ENSFCAG00000009258) #27 ATP6V1C2 (ENSFCAG00000009257) #28 NOL10 (ENSFCAG00000009255) #29 ODC1 (ENSFCAG00000027500) #30 HPCAL1 (ENSFCAG00000009252) #31 RRM2 (ENSFCAG00000003942) #32 CYS1 (ENSFCAG00000045113) KLF11 (ENSFCAG00000030965) #33 GRHL1 (ENSFCAG00000007856) #35 TAF1B (ENSFCAG00000007855) #36 YWHAQ (ENSFCAG00000007854) ##37 Caniformia ANCESTRAL SPECIES 18 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Caniformia_b ANCESTRAL SPECIES 11 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Mustelinae ANCESTRAL SPECIES 55 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Ferret MODERN SPECIES 178 RAD51AP2 (ENSMPUG00000013634) ENSMPUG00000013627 CYRIA (ENSMPUG00000013624) #14 ENSMPUG00000013621 ENSMPUG00000013620 #15 DDX1 (ENSMPUG00000013606) #16 NBAS (ENSMPUG00000013588) #17 ENSMPUG00000013586 ENSMPUG00000013584 LRATD1 (ENSMPUG00000019483) #18 ENSMPUG00000019482 TRIB2 (ENSMPUG00000013582) #19 LPIN1 (ENSMPUG00000013577) #20 NTSR2 (ENSMPUG00000013574) GREB1 (ENSMPUG00000013561) #21 E2F6 (ENSMPUG00000013559) #22 ROCK2 (ENSMPUG00000013549) #23 SLC66A3 (ENSMPUG00000013545) #24 C2orf50 (ENSMPUG00000013541) #25 ENSMPUG00000013537 KCNF1 (ENSMPUG00000019481) #26 PDIA6 (ENSMPUG00000013530) #27 ENSMPUG00000019480 ATP6V1C2 (ENSMPUG00000013450) #28 NOL10 (ENSMPUG00000013325) #29 ODC1 (ENSMPUG00000013321) #30 HPCAL1 (ENSMPUG00000013302) #31 RRM2 (ENSMPUG00000013295) #32 KLF11 (ENSMPUG00000013287) #33 ENSMPUG00000013281 ENSMPUG00000013277 American mink MODERN SPECIES 7 MSGN1 (ENSNVIG00000013513) #9 GEN1 (ENSNVIG00000013515) #10 ENSNVIG00000013543 VSNL1 (ENSNVIG00000013664) #12 RAD51AP2 (ENSNVIG00000013682) CYRIA (ENSNVIG00000013712) #14 MYCN (ENSNVIG00000013755) #15 ENSNVIG00000013771 DDX1 (ENSNVIG00000013794) #16 NBAS (ENSNVIG00000013960) #17 LRATD1 (ENSNVIG00000014024) #18 TRIB2 (ENSNVIG00000014034) #19 LPIN1 (ENSNVIG00000014063) #20 NTSR2 (ENSNVIG00000014146) GREB1 (ENSNVIG00000014163) #21 E2F6 (ENSNVIG00000014248) #22 ROCK2 (ENSNVIG00000014361) #23 SLC66A3 (ENSNVIG00000014450) #24 C2orf50 (ENSNVIG00000014464) #25 KCNF1 (ENSNVIG00000014487) #26 PDIA6 (ENSNVIG00000014505) #27 ATP6V1C2 (ENSNVIG00000014715) #28 NOL10 (ENSNVIG00000014778) #29 DCOR (ENSNVIG00000014941) #30 ENSNVIG00000014964 RRM2 (ENSNVIG00000014985) #32 KLF11 (ENSNVIG00000015016) #33 GRHL1 (ENSNVIG00000015046) #35 TAF1B (ENSNVIG00000015127) #36 YWHAQ (ENSNVIG00000015162) ##37 ADAM17 (ENSNVIG00000015197) Ursidae ANCESTRAL SPECIES 9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Giant Panda MODERN SPECIES 14 RAD51AP2 (ENSAMEG00000002644) ENSAMEG00000002627 CYRIA (ENSAMEG00000001040) #14 ENSAMEG00000023555 ENSAMEG00000001062 #15 ENSAMEG00000029970 DDX1 (ENSAMEG00000001071) #16 NBAS (ENSAMEG00000010210) #17 ENSAMEG00000030828 LRATD1 (ENSAMEG00000028918) #18 ENSAMEG00000024142 TRIB2 (ENSAMEG00000012759) #19 LPIN1 (ENSAMEG00000012767) #20 NTSR2 (ENSAMEG00000012823) GREB1 (ENSAMEG00000012841) #21 E2F6 (ENSAMEG00000011667) #22 ROCK2 (ENSAMEG00000011596) #23 ENSAMEG00000026567 SLC66A3 (ENSAMEG00000011583) #24 C2orf50 (ENSAMEG00000011580) #25 KCNF1 (ENSAMEG00000019267) #26 ENSAMEG00000011555 #27 ATP6V1C2 (ENSAMEG00000011506) #28 NOL10 (ENSAMEG00000011438) #29 ODC1 (ENSAMEG00000011415) #30 HPCAL1 (ENSAMEG00000029791) #31 RRM2 (ENSAMEG00000011372) #32 KLF11 (ENSAMEG00000011355) #33 GRHL1 (ENSAMEG00000011320) #35 TAF1B (ENSAMEG00000011301) #36 YWHAQ (ENSAMEG00000008618) ##37 Ursus ANCESTRAL SPECIES 125 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Polar bear MODERN SPECIES 89 TRIB2 (ENSUMAG00000002335) #19 LPIN1 (ENSUMAG00000002345) #20 GREB1 (ENSUMAG00000002360) #21 E2F6 (ENSUMAG00000002414) #22 ROCK2 (ENSUMAG00000002537) #23 SLC66A3 (ENSUMAG00000003286) #24 C2orf50 (ENSUMAG00000003297) #25 KCNF1 (ENSUMAG00000003301) #26 PDIA6 (ENSUMAG00000003308) #27 ATP6V1C2 (ENSUMAG00000003318) #28 NOL10 (ENSUMAG00000003385) #29 ODC1 (ENSUMAG00000003406) #30 HPCAL1 (ENSUMAG00000003415) #31 RRM2 (ENSUMAG00000003431) #32 KLF11 (ENSUMAG00000003481) #33 GRHL1 (ENSUMAG00000003494) #35 TAF1B (ENSUMAG00000003559) #36 YWHAQ (ENSUMAG00000003646) ##37 ADAM17 (ENSUMAG00000003653) American black bear DUPLICATION American black bear MODERN SPECIES 1252 ENSUAMG00000010611 #22 American black bear MODERN SPECIES 923 ENSUAMG00000013941 #22 ROCK2 (ENSUAMG00000014156) #23 SLC66A3 (ENSUAMG00000019449) #24 C2orf50 (ENSUAMG00000019450) #25 KCNF1 (ENSUAMG00000019451) #26 Canidae ANCESTRAL SPECIES 46 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000154502.u.b ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Canis_lupus ANCESTRAL SPECIES 10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00950000185147 ENSGT00950000185177 ENSGT00940000154502.u.b ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Dog MODERN SPECIES 8 SMC6 (ENSCAFG00845016537) #11 VSNL1 (ENSCAFG00845016286) #12 RAD51AP2 (ENSCAFG00845016237) CYRIA (ENSCAFG00845016166) #14 MYCN (ENSCAFG00845016124) #15 ENSCAFG00845016099 ENSCAFG00845016086 DDX1 (ENSCAFG00845015852) #16 NBAS (ENSCAFG00845029355) #17 LRATD1 (ENSCAFG00845029228) #18 ENSCAFG00845029183 TRIB2 (ENSCAFG00845029138) #19 LPIN1 (ENSCAFG00845028736) #20 NTSR2 (ENSCAFG00845028451) GREB1 (ENSCAFG00845028242) #21 E2F6 (ENSCAFG00845028092) #22 ROCK2 (ENSCAFG00845027461) #23 SLC66A3 (ENSCAFG00845027286) #24 C2orf50 (ENSCAFG00845027230) #25 KCNF1 (ENSCAFG00845027200) #26 PDIA6 (ENSCAFG00845026954) #27 ATP6V1C2 (ENSCAFG00845026644) #28 NOL10 (ENSCAFG00845026340) #29 ODC1 (ENSCAFG00845026175) #30 HPCAL1 (ENSCAFG00845026130) #31 RRM2 (ENSCAFG00845025952) #32 CYS1 (ENSCAFG00845025907) KLF11 (ENSCAFG00845025845) #33 GRHL1 (ENSCAFG00845025614) #35 TAF1B (ENSCAFG00845025510) #36 YWHAQ (ENSCAFG00845025457) ##37 Dingo MODERN SPECIES 223 ENSCAFG00020026047 VSNL1 (ENSCAFG00020026051) #12 RAD51AP2 (ENSCAFG00020026058) CYRIA (ENSCAFG00020026065) #14 MYCN (ENSCAFG00020026072) #15 ENSCAFG00020026073 ENSCAFG00020026076 ENSCAFG00020026077 DDX1 (ENSCAFG00020026083) #16 NBAS (ENSCAFG00020026147) #17 LRATD1 (ENSCAFG00020026306) #18 TRIB2 (ENSCAFG00020026310) #19 LPIN1 (ENSCAFG00020026371) #20 NTSR2 (ENSCAFG00020026550) GREB1 (ENSCAFG00020026552) #21 E2F6 (ENSCAFG00020026554) #22 ROCK2 (ENSCAFG00020026578) #23 SLC66A3 (ENSCAFG00020026709) #24 C2orf50 (ENSCAFG00020026711) #25 KCNF1 (ENSCAFG00020026713) #26 PDIA6 (ENSCAFG00020026714) #27 ATP6V1C2 (ENSCAFG00020026718) #28 NOL10 (ENSCAFG00020026722) #29 ODC1 (ENSCAFG00020026728) #30 HPCAL1 (ENSCAFG00020026737) #31 RRM2 (ENSCAFG00020026744) #32 CYS1 (ENSCAFG00020026758) KLF11 (ENSCAFG00020026763) #33 GRHL1 (ENSCAFG00020026767) #35 TAF1B (ENSCAFG00020026787) #36 YWHAQ (ENSCAFG00020026795) ##37 Red fox MODERN SPECIES 76 TRIB2 (ENSVVUG00000000886) #19 LPIN1 (ENSVVUG00000000949) #20 NTSR2 (ENSVVUG00000001062) GREB1 (ENSVVUG00000001085) #21 E2F6 (ENSVVUG00000001169) #22 ROCK2 (ENSVVUG00000001206) #23 PQLC3 (ENSVVUG00000001281) #24 CUNH2orf50 (ENSVVUG00000001296) #25 KCNF1 (ENSVVUG00000001317) #26 PDIA6 (ENSVVUG00000001332) #27 ATP6V1C2 (ENSVVUG00000001351) #28 NOL10 (ENSVVUG00000001394) #29 ENSVVUG00000001420 ODC1 (ENSVVUG00000001437) #30 HPCAL1 (ENSVVUG00000001457) #31 RRM2 (ENSVVUG00000001484) #32 KLF11 (ENSVVUG00000001585) #33 GRHL1 (ENSVVUG00000001610) #35 TAF1B (ENSVVUG00000001641) #36 YWHAQ (ENSVVUG00000002125) ##37 Artiodactyla ANCESTRAL SPECIES 16 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Suina ANCESTRAL SPECIES 13 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Chacoan peccary MODERN SPECIES 776 KCNS3 (ENSCWAG00000016339) #8 MSGN1 (ENSCWAG00000016325) #9 GEN1 (ENSCWAG00000016234) #10 SMC6 (ENSCWAG00000016171) #11 VSNL1 (ENSCWAG00000016143) #12 RAD51AP2 (ENSCWAG00000016094) CYRIA (ENSCWAG00000016027) #14 MYCN (ENSCWAG00000015961) #15 DDX1 (ENSCWAG00000015647) #16 NBAS (ENSCWAG00000015265) #17 LRATD1 (ENSCWAG00000015236) #18 TRIB2 (ENSCWAG00000015191) #19 LPIN1 (ENSCWAG00000014537) #20 NTSR2 (ENSCWAG00000014475) GREB1 (ENSCWAG00000014037) #21 E2F6 (ENSCWAG00000013986) #22 Pig MODERN SPECIES 11 GEN1 (ENSSSCG00000008613) #10 SMC6 (ENSSSCG00000008614) #11 VSNL1 (ENSSSCG00000008615) #12 RAD51AP2 (ENSSSCG00000038058) CYRIA (ENSSSCG00000008617) #14 ENSSSCG00000033084 MYCN (ENSSSCG00000008618) #15 DDX1 (ENSSSCG00000008619) #16 NBAS (ENSSSCG00000008621) #17 LRATD1 (ENSSSCG00000008664) #18 ENSSSCG00000042932 TRIB2 (ENSSSCG00000039080) #19 LPIN1 (ENSSSCG00000008624) #20 NTSR2 (ENSSSCG00000008625) GREB1 (ENSSSCG00000025483) #21 E2F6 (ENSSSCG00000026161) #22 ROCK2 (ENSSSCG00000008629) #23 SLC66A3 (ENSSSCG00000008631) #24 KCNF1 (ENSSSCG00000033463) #26 PDIA6 (ENSSSCG00000008633) #27 ATP6V1C2 (ENSSSCG00000008634) #28 NOL10 (ENSSSCG00000008635) #29 ODC1 (ENSSSCG00000027121) #30 HPCAL1 (ENSSSCG00000003663) #31 ENSSSCG00000031741 #32 CYS1 (ENSSSCG00000040267) KLF11 (ENSSSCG00000038643) #33 GRHL1 (ENSSSCG00000026068) #35 TAF1B (ENSSSCG00000008637) #36 YWHAQ (ENSSSCG00000008638) ##37 ADAM17 (ENSSSCG00000008641) Artiodactyla_a ANCESTRAL SPECIES 15 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Camelidae ANCESTRAL SPECIES 12 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 ENSGT00390000008069 Arabian camel MODERN SPECIES 6 GEN1 (ENSCDRG00005004909) #10 SMC6 (ENSCDRG00005004835) #11 VSNL1 (ENSCDRG00005004814) #12 RAD51AP2 (ENSCDRG00005004783) CYRIA (ENSCDRG00005004743) #14 ENSCDRG00005004717 #15 ENSCDRG00005004697 #15 DDX1 (ENSCDRG00005004527) #16 NBAS (ENSCDRG00005004285) #17 LRATD1 (ENSCDRG00005004252) #18 ENSCDRG00005004212 TRIB2 (ENSCDRG00005004180) #19 LPIN1 (ENSCDRG00005003875) #20 NTSR2 (ENSCDRG00005003795) GREB1 (ENSCDRG00005003633) #21 E2F6 (ENSCDRG00005003569) #22 ROCK2 (ENSCDRG00005003503) #23 SLC66A3 (ENSCDRG00005003399) #24 C2orf50 (ENSCDRG00005003354) #25 PDIA6 (ENSCDRG00005021479) #27 ATP6V1C2 (ENSCDRG00005021467) #28 NOL10 (ENSCDRG00005021454) #29 ODC1 (ENSCDRG00005021445) #30 HPCAL1 (ENSCDRG00005021441) #31 RRM2 (ENSCDRG00005021436) #32 KLF11 (ENSCDRG00005021426) #33 GRHL1 (ENSCDRG00005021421) #35 TAF1B (ENSCDRG00005021414) #36 ENSCDRG00005021412 YWHAQ (ENSCDRG00005021407) ##37 ADAM17 (ENSCDRG00005021400) Alpaca MODERN SPECIES 495 E2F6 (ENSVPAG00000003666) #22 ROCK2 (ENSVPAG00000003665) #23 Artiodactyla_b ANCESTRAL SPECIES 14 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Cetacea ANCESTRAL SPECIES 16 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.db.b #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Blue whale MODERN SPECIES 4 CYRIA (ENSBMSG00010015112) #14 MYCN (ENSBMSG00010015182) #15 ENSBMSG00010015206 ENSBMSG00010015278 DDX1 (ENSBMSG00010015414) #16 NBAS (ENSBMSG00010015769) #17 LRATD1 (ENSBMSG00010015823) #18 ENSBMSG00010015831 ENSBMSG00010015848 TRIB2 (ENSBMSG00010015872) #19 ENSBMSG00010015898 LPIN1 (ENSBMSG00010015983) #20 NTSR2 (ENSBMSG00010016552) ENSBMSG00010016732 #21 ENSBMSG00010016772 E2F6 (ENSBMSG00010016797) #22 ROCK2 (ENSBMSG00010016865) #23 ENSBMSG00010017126 SLC66A3 (ENSBMSG00010017158) #24 C2orf50 (ENSBMSG00010017406) #25 KCNF1 (ENSBMSG00010017441) #26 PDIA6 (ENSBMSG00010017505) #27 ATP6V1C2 (ENSBMSG00010017714) #28 NOL10 (ENSBMSG00010018130) #29 ENSBMSG00010018302 #30 HPCAL1 (ENSBMSG00010018376) #31 ENSBMSG00010018397 RRM2 (ENSBMSG00010018407) #32 CYS1 (ENSBMSG00010018428) KLF11 (ENSBMSG00010018472) #33 ENSBMSG00010018599 #35 Odontoceti ANCESTRAL SPECIES 15 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.db.b #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Sperm whale MODERN SPECIES 1086 E2F6 (ENSPCTG00005013750) #22 Odontoceti_a ANCESTRAL SPECIES 12 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.db.b #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Dolphin MODERN SPECIES 3561 LPIN1 (ENSTTRG00000013171) #20 NTSR2 (ENSTTRG00000013170) GREB1 (ENSTTRG00000013169) #21 E2F6 (ENSTTRG00000013168) #22 ROCK2 (ENSTTRG00000013165) #23 PQLC3 (ENSTTRG00000013164) #24 ENSTTRG00000013163 KCNF1 (ENSTTRG00000013162) #26 PDIA6 (ENSTTRG00000013160) #27 ATP6V1C2 (ENSTTRG00000013159) #28 NOL10 (ENSTTRG00000013158) #29 Odontoceti_b ANCESTRAL SPECIES 15 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00950000185985 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00390000012178.g.b.a.b.b ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.db.b #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Monodontidae ANCESTRAL SPECIES 13 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00950000185177 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00390000012178.g.b.a.b.b ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C.f #21 ENSGT00940000168548 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.db.b #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 ENSGT00940000155443 Narwhal MODERN SPECIES 305 CYRIA (ENSMMNG00015005774) #14 ENSMMNG00015005789 #15 ENSMMNG00015005798 ENSMMNG00015005811 #15 ENSMMNG00015005828 DDX1 (ENSMMNG00015005859) #16 NBAS (ENSMMNG00015005986) #17 LRATD1 (ENSMMNG00015006182) #18 ENSMMNG00015006201 TRIB2 (ENSMMNG00015006221) #19 ENSMMNG00015006235 LPIN1 (ENSMMNG00015006305) #20 NTSR2 (ENSMMNG00015006444) GREB1 (ENSMMNG00015006496) #21 ENSMMNG00015006580 E2F6 (ENSMMNG00015006595) #22 ROCK2 (ENSMMNG00015006633) #23 ENSMMNG00015006662 SLC66A3 (ENSMMNG00015006697) #24 KCNF1 (ENSMMNG00015006742) #26 PDIA6 (ENSMMNG00015006773) #27 ATP6V1C2 (ENSMMNG00015006876) #28 NOL10 (ENSMMNG00015006937) #29 ENSMMNG00015006983 #30 HPCAL1 (ENSMMNG00015007009) #31 ENSMMNG00015007031 #32 CYS1 (ENSMMNG00015007058) KLF11 (ENSMMNG00015007075) #33 GRHL1 (ENSMMNG00015007097) #35 TAF1B (ENSMMNG00015007142) #36 YWHAQ (ENSMMNG00015007193) ##37 Beluga whale MODERN SPECIES 37 RAD51AP2 (ENSDLEG00000003910) FAM49A (ENSDLEG00000003918) #14 MYCN (ENSDLEG00000003931) #15 ENSDLEG00000003941 ENSDLEG00000003947 DDX1 (ENSDLEG00000004022) #16 NBAS (ENSDLEG00000004320) #17 FAM84A (ENSDLEG00000004385) #18 ENSDLEG00000004388 ENSDLEG00000004393 TRIB2 (ENSDLEG00000004400) #19 ENSDLEG00000004406 LPIN1 (ENSDLEG00000004420) #20 NTSR2 (ENSDLEG00000004495) GREB1 (ENSDLEG00000004506) #21 E2F6 (ENSDLEG00000004522) #22 ENSDLEG00000004536 #23 ENSDLEG00000004551 ENSDLEG00000004566 #23 PQLC3 (ENSDLEG00000004589) #24 KCNF1 (ENSDLEG00000004602) #26 PDIA6 (ENSDLEG00000004606) #27 ATP6V1C2 (ENSDLEG00000004632) #28 NOL10 (ENSDLEG00000004668) #29 ODC1 (ENSDLEG00000004685) #30 HPCAL1 (ENSDLEG00000004713) #31 ENSDLEG00000004724 #32 CYS1 (ENSDLEG00000004756) KLF11 (ENSDLEG00000004778) #33 GRHL1 (ENSDLEG00000004790) #35 TAF1B (ENSDLEG00000004806) #36 Vaquita MODERN SPECIES 4 CYRIA (ENSPSNG00000005208) #14 ENSPSNG00000005190 MYCN (ENSPSNG00000005177) #15 ENSPSNG00000005167 DDX1 (ENSPSNG00000005062) #16 NBAS (ENSPSNG00000004987) #17 LRATD1 (ENSPSNG00000004919) #18 ENSPSNG00000004906 ENSPSNG00000004892 TRIB2 (ENSPSNG00000004874) #19 ENSPSNG00000004854 LPIN1 (ENSPSNG00000004678) #20 NTSR2 (ENSPSNG00000004561) ENSPSNG00000004458 #21 ENSPSNG00000004435 E2F6 (ENSPSNG00000004405) #22 ROCK2 (ENSPSNG00000004347) #23 SLC66A3 (ENSPSNG00000004284) #24 KCNF1 (ENSPSNG00000022584) #26 PDIA6 (ENSPSNG00000022580) #27 ATP6V1C2 (ENSPSNG00000022577) #28 NOL10 (ENSPSNG00000022572) #29 ENSPSNG00000022567 #30 HPCAL1 (ENSPSNG00000022565) #31 ENSPSNG00000022562 #32 CYS1 (ENSPSNG00000022560) KLF11 (ENSPSNG00000022558) #33 GRHL1 (ENSPSNG00000022556) #35 TAF1B (ENSPSNG00000022554) #36 YWHAQ (ENSPSNG00000022551) ##37 ADAM17 (ENSPSNG00000022548) Pecora ANCESTRAL SPECIES 5 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 2 KCNS3 (ENSCHYG00000007031) #8 MSGN1 (ENSCHYG00000007045) #9 GEN1 (ENSCHYG00000007066) #10 SMC6 (ENSCHYG00000007159) #11 VSNL1 (ENSCHYG00000007343) #12 RAD51AP2 (ENSCHYG00000007371) CYRIA (ENSCHYG00000007408) #14 ENSCHYG00000007479 #15 DDX1 (ENSCHYG00000007524) #16 NBAS (ENSCHYG00000007960) #17 LRATD1 (ENSCHYG00000008068) #18 TRIB2 (ENSCHYG00000008145) #19 LPIN1 (ENSCHYG00000008194) #20 NTSR2 (ENSCHYG00000008520) GREB1 (ENSCHYG00000008543) #21 ENSCHYG00000008703 #22 ROCK2 (ENSCHYG00000008822) #23 ENSCHYG00000009170 SLC66A3 (ENSCHYG00000009293) #24 C2orf50 (ENSCHYG00000009330) #25 KCNF1 (ENSCHYG00000009374) #26 PDIA6 (ENSCHYG00000009406) #27 ATP6V1C2 (ENSCHYG00000009711) #28 NOL10 (ENSCHYG00000010137) #29 ENSCHYG00000011027 #30 HPCAL1 (ENSCHYG00000011179) #31 ENSCHYG00000011216 ENSCHYG00000011258 #32 KLF11 (ENSCHYG00000011297) #33 GRHL1 (ENSCHYG00000011321) #35 TAF1B (ENSCHYG00000011467) #36 Yarkand deer MODERN SPECIES 1323 EGFL6 (ENSCHYG00000023766) TCEANC (ENSCHYG00000023727) RAB9A (ENSCHYG00000023718) ENSCHYG00000023673 OFD1 (ENSCHYG00000023561) GPM6B (ENSCHYG00000023125) GEMIN8 (ENSCHYG00000023096) ENSCHYG00000023086 ENSCHYG00000023075 GLRA2 (ENSCHYG00000022919) FANCB (ENSCHYG00000022845) MOSPD2 (ENSCHYG00000022624) ASB9 (ENSCHYG00000022451) ASB11 (ENSCHYG00000022074) PIGA (ENSCHYG00000021776) ENSCHYG00000021725 #22 PIR (ENSCHYG00000021541) BMX (ENSCHYG00000021205) ACE2 (ENSCHYG00000020844) ENSCHYG00000020684 ENSCHYG00000020647 ENSCHYG00000020589 ENSCHYG00000020523 AP1S2 (ENSCHYG00000019973) GRPR (ENSCHYG00000019874) ENSCHYG00000019847 S100G (ENSCHYG00000019799) CTPS2 (ENSCHYG00000019258) TXLNG (ENSCHYG00000019015) RBBP7 (ENSCHYG00000018713) RAI2 (ENSCHYG00000018670) Yarkand deer MODERN SPECIES 1323 BCOR (ENSCHYG00000023328) ENSCHYG00000023432 MID1IP1 (ENSCHYG00000023473) TSPAN7 (ENSCHYG00000023486) ENSCHYG00000023583 OTC (ENSCHYG00000023594) ENSCHYG00000023658 SYTL5 (ENSCHYG00000024135) ENSCHYG00000024198 DYNLT3 (ENSCHYG00000024212) CYBB (ENSCHYG00000024252) LANCL3 (ENSCHYG00000024391) ENSCHYG00000024427 ENSCHYG00000024437 PRRG1 (ENSCHYG00000024453) ENSCHYG00000024484 #22 ENSCHYG00000024508 ENSCHYG00000024517 ENSCHYG00000024537 ENSCHYG00000024561 ENSCHYG00000024760 ENSCHYG00000024784 ENSCHYG00000024803 ENSCHYG00000024831 ENSCHYG00000024844 ENSCHYG00000024865 ENSCHYG00000024874 ENSCHYG00000024884 ENSCHYG00000024891 DMD (ENSCHYG00000025075) ENSCHYG00000017141 Percora_a ANCESTRAL SPECIES 13 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Bovidae ANCESTRAL SPECIES 5 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Bovinae ANCESTRAL SPECIES 4 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00990000203553.c.b.o.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 American bison MODERN SPECIES 3221 CYRIA (ENSBBBG00000024980) #14 ENSBBBG00000024994 #15 DDX1 (ENSBBBG00000025299) #16 NBAS (ENSBBBG00000008267) #17 LRATD1 (ENSBBBG00000025504) #18 TRIB2 (ENSBBBG00000011404) #19 LPIN1 (ENSBBBG00000002110) #20 GREB1 (ENSBBBG00000011590) #21 E2F6 (ENSBBBG00000011607) #22 ENSBBBG00000011612 ROCK2 (ENSBBBG00000011669) #23 SLC66A3 (ENSBBBG00000011693) #24 C2orf50 (ENSBBBG00000011703) #25 KCNF1 (ENSBBBG00000002161) #26 ENSBBBG00000011712 ENSBBBG00000011729 #27 ATP6V1C2 (ENSBBBG00000011779) #28 NOL10 (ENSBBBG00000002209) #29 ODC1 (ENSBBBG00000011893) #30 HPCAL1 (ENSBBBG00000007122) #31 RRM2 (ENSBBBG00000011911) #32 KLF11 (ENSBBBG00000011923) #33 GRHL1 (ENSBBBG00000011949) #35 TAF1B (ENSBBBG00000011961) #36 Bos ANCESTRAL SPECIES 5 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000203553.c.b.o.b ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646.c #27 ENSGT00390000004263.b #28 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Bos_b ANCESTRAL SPECIES 16 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000203553.c.b.o.b ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646.c #27 ENSGT00390000004263.b #28 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Hybrid Bos Indicus MODERN SPECIES 2 GEN1 (ENSBIXG00005024882) #10 SMC6 (ENSBIXG00005004235) #11 VSNL1 (ENSBIXG00005024708) #12 RAD51AP2 (ENSBIXG00005024673) CYRIA (ENSBIXG00005024640) #14 MYCN (ENSBIXG00005024578) #15 DDX1 (ENSBIXG00005024527) #16 NBAS (ENSBIXG00005007735) #17 LRATD1 (ENSBIXG00005024161) #18 TRIB2 (ENSBIXG00005024058) #19 LPIN1 (ENSBIXG00005023863) #20 NTSR2 (ENSBIXG00005004030) GREB1 (ENSBIXG00005023461) #21 ENSBIXG00005022741 ENSBIXG00005003893 E2F6 (ENSBIXG00005022718) #22 ENSBIXG00005022696 ROCK2 (ENSBIXG00005022677) #23 ENSBIXG00005022563 SLC66A3 (ENSBIXG00005022531) #24 C2orf50 (ENSBIXG00005022500) #25 KCNF1 (ENSBIXG00005022457) #26 ENSBIXG00005007689 #27 ENSBIXG00005007375 #28 ENSBIXG00005022288 NOL10 (ENSBIXG00005022242) #29 ENSBIXG00005022099 #30 HPCAL1 (ENSBIXG00005006887) #31 RRM2 (ENSBIXG00005022029) #32 ENSBIXG00005003712 KLF11 (ENSBIXG00005021989) #33 Cow MODERN SPECIES 2 BET1L (ENSBTAG00000001744) RIC8A (ENSBTAG00000002042) SIRT3 (ENSBTAG00000002044) PSMD13 (ENSBTAG00000002045) COX8B (ENSBTAG00000002046) NLRP6 (ENSBTAG00000001076) PGGHG (ENSBTAG00000016722) IFITM5 (ENSBTAG00000020575) ENSBTAG00000019018 LRATD1 (ENSBTAG00000004948) #18 ENSBTAG00000019284 TRIB2 (ENSBTAG00000016045) #19 LPIN1 (ENSBTAG00000007689) #20 NTSR2 (ENSBTAG00000003691) GREB1 (ENSBTAG00000015402) #21 E2F6 (ENSBTAG00000048286) #22 ROCK2 (ENSBTAG00000005847) #23 ENSBTAG00000048065 SLC66A3 (ENSBTAG00000020297) #24 C11H2orf50 (ENSBTAG00000001903) #25 KCNF1 (ENSBTAG00000021283) #26 PDIA6 (ENSBTAG00000001928) #27 ATP6V1C2 (ENSBTAG00000001927) #28 NOL10 (ENSBTAG00000002716) #29 ODC1 (ENSBTAG00000004256) #30 HPCAL1 (ENSBTAG00000004259) #31 RRM2 (ENSBTAG00000008216) #32 CYS1 (ENSBTAG00000052669) KLF11 (ENSBTAG00000046218) #33 GRHL1 (ENSBTAG00000007485) #35 TAF1B (ENSBTAG00000007543) #36 Bos_a ANCESTRAL SPECIES 6 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT00990000203553.c.b.o.b ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646.c #27 ENSGT00390000004263.b #28 ENSGT01100000263480.a.a.b.a.a.a.b.a.a.a.a.a.a.a.a.a ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 Wild yak MODERN SPECIES 496 E2F6 (ENSBMUG00000017940) #22 ROCK2 (ENSBMUG00000017990) #23 ENSBMUG00000018037 SLC66A3 (ENSBMUG00000018094) #24 C2orf50 (ENSBMUG00000018120) #25 KCNF1 (ENSBMUG00000018144) #26 ENSBMUG00000018197 #27 ENSBMUG00000018266 #28 NOL10 (ENSBMUG00000018376) #29 Domestic yak DUPLICATION Domestic yak MODERN SPECIES 28 KCNS3 (ENSBGRG00000022008) #8 MSGN1 (ENSBGRG00000022021) #9 GEN1 (ENSBGRG00000022034) #10 SMC6 (ENSBGRG00000022073) #11 VSNL1 (ENSBGRG00000022276) #12 RAD51AP2 (ENSBGRG00000022307) CYRIA (ENSBGRG00000022323) #14 ENSBGRG00000022487 #15 DDX1 (ENSBGRG00000022559) #16 NBAS (ENSBGRG00000022914) #17 LRATD1 (ENSBGRG00000023277) #18 TRIB2 (ENSBGRG00000023292) #19 LPIN1 (ENSBGRG00000023367) #20 NTSR2 (ENSBGRG00000023894) GREB1 (ENSBGRG00000023941) #21 E2F6 (ENSBGRG00000024251) #22 ROCK2 (ENSBGRG00000024309) #23 ENSBGRG00000024544 ENSBGRG00000024588 #24 C2orf50 (ENSBGRG00000024690) #25 KCNF1 (ENSBGRG00000024709) #26 ENSBGRG00000024734 #27 ENSBGRG00000024848 #28 ENSBGRG00000024916 NOL10 (ENSBGRG00000024949) #29 ENSBGRG00000010565 ENSBGRG00000010591 #30 HPCAL1 (ENSBGRG00000010770) #31 RRM2 (ENSBGRG00000010858) #32 CYS1 (ENSBGRG00000011167) KLF11 (ENSBGRG00000011215) #33 Domestic yak MODERN SPECIES 69 ENSBGRG00000020948 MID1IP1 (ENSBGRG00000021050) TSPAN7 (ENSBGRG00000021078) ENSBGRG00000021188 OTC (ENSBGRG00000021238) ENSBGRG00000021428 SYTL5 (ENSBGRG00000021997) ENSBGRG00000022166 ENSBGRG00000007060 ENSBGRG00000007080 CYBB (ENSBGRG00000007179) LANCL3 (ENSBGRG00000007763) ENSBGRG00000007860 ENSBGRG00000007894 PRRG1 (ENSBGRG00000007941) ENSBGRG00000008034 #22 ENSBGRG00000008058 ENSBGRG00000008090 ENSBGRG00000008137 ENSBGRG00000008170 ENSBGRG00000008253 ENSBGRG00000008290 ENSBGRG00000008355 TMEM47 (ENSBGRG00000008401) ENSBGRG00000008430 ENSBGRG00000008441 ENSBGRG00000008513 ENSBGRG00000008563 ENSBGRG00000008590 ENSBGRG00000008605 ENSBGRG00000008617 Caprinae ANCESTRAL SPECIES 9 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a.fb.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00390000016845 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Goat MODERN SPECIES 2 MSGN1 (ENSCHIG00000010365) #9 GEN1 (ENSCHIG00000013888) #10 SMC6 (ENSCHIG00000010144) #11 VSNL1 (ENSCHIG00000006913) #12 CYRIA (ENSCHIG00000018672) #14 MYCN (ENSCHIG00000017882) #15 DDX1 (ENSCHIG00000011046) #16 NBAS (ENSCHIG00000014758) #17 ENSCHIG00000013770 LRATD1 (ENSCHIG00000008065) #18 ENSCHIG00000021912 TRIB2 (ENSCHIG00000015740) #19 LPIN1 (ENSCHIG00000018539) #20 NTSR2 (ENSCHIG00000011816) GREB1 (ENSCHIG00000017667) #21 E2F6 (ENSCHIG00000016333) #22 ROCK2 (ENSCHIG00000013173) #23 SLC66A3 (ENSCHIG00000016355) #24 C2orf50 (ENSCHIG00000019292) #25 KCNF1 (ENSCHIG00000012739) #26 PDIA6 (ENSCHIG00000007838) #27 ATP6V1C2 (ENSCHIG00000017272) #28 NOL10 (ENSCHIG00000012935) #29 ENSCHIG00000027003 #30 HPCAL1 (ENSCHIG00000019475) #31 RRM2 (ENSCHIG00000009694) #32 ENSCHIG00000004531 CYS1 (ENSCHIG00000018115) KLF11 (ENSCHIG00000011294) #33 ENSCHIG00000026755 #35 TAF1B (ENSCHIG00000013783) #36 Rambouillet Sheep DUPLICATION Rambouillet Sheep MODERN SPECIES 19 KCNS3 (ENSOARG00020017454) #8 MSGN1 (ENSOARG00020017429) #9 SMC6 (ENSOARG00020016887) #11 VSNL1 (ENSOARG00020016837) #12 RAD51AP2 (ENSOARG00020016789) FAM49A (ENSOARG00020016491) #14 ENSOARG00020016447 #15 DDX1 (ENSOARG00020016090) #16 NBAS (ENSOARG00020013231) #17 LRATD1 (ENSOARG00020013098) #18 TRIB2 (ENSOARG00020013035) #19 ENSOARG00020013002 LPIN1 (ENSOARG00020012462) #20 NTSR2 (ENSOARG00020012412) GREB1 (ENSOARG00020011244) #21 E2F6 (ENSOARG00020011096) #22 ROCK2 (ENSOARG00020010271) #23 SLC66A3 (ENSOARG00020010159) #24 C2orf50 (ENSOARG00020010067) #25 KCNF1 (ENSOARG00020010045) #26 PDIA6 (ENSOARG00020009823) #27 ATP6V1C2 (ENSOARG00020009600) #28 NOL10 (ENSOARG00020009305) #29 ODC1 (ENSOARG00020009225) #30 HPCAL1 (ENSOARG00020009151) #31 ENSOARG00020009097 #32 CYS1 (ENSOARG00020009035) KLF11 (ENSOARG00020008965) #33 GRHL1 (ENSOARG00020008773) #35 TAF1B (ENSOARG00020008727) #36 YWHAQ (ENSOARG00020008682) ##37 Rambouillet Sheep MODERN SPECIES 205 OTC (ENSOARG00020021238) ENSOARG00020021214 ENSOARG00020021200 ENSOARG00020021165 ENSOARG00020021153 ENSOARG00020021142 SRPX (ENSOARG00020020935) SYTL5 (ENSOARG00020020775) ENSOARG00020020752 DYNLT3 (ENSOARG00020020658) CYBB (ENSOARG00020020358) ENSOARG00020020318 ENSOARG00020020310 ENSOARG00020020297 ENSOARG00020020237 ENSOARG00020020215 #22 PRRG1 (ENSOARG00020020186) ENSOARG00020020167 ENSOARG00020020152 ENSOARG00020020139 ENSOARG00020019898 ENSOARG00020019815 TMEM47 (ENSOARG00020019772) ENSOARG00020019743 ENSOARG00020019728 ENSOARG00020019692 ENSOARG00020019542 ENSOARG00020019485 ENSOARG00020017689 TAB3 (ENSOARG00020017425) ENSOARG00020016575 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 238 TRIB2 (ENSMMSG00000001808) #19 LPIN1 (ENSMMSG00000001708) #20 NTSR2 (ENSMMSG00000001678) GREB1 (ENSMMSG00000001601) #21 E2F6 (ENSMMSG00000001567) #22 ROCK2 (ENSMMSG00000001542) #23 SLC66A3 (ENSMMSG00000001508) #24 C2orf50 (ENSMMSG00000001487) #25 KCNF1 (ENSMMSG00000001477) #26 PDIA6 (ENSMMSG00000001421) #27 ENSMMSG00000001405 ATP6V1C2 (ENSMMSG00000001335) #28 NOL10 (ENSMMSG00000001168) #29 ENSMMSG00000001108 #30 HPCAL1 (ENSMMSG00000001078) #31 ENSMMSG00000001037 #32 CYS1 (ENSMMSG00000001021) KLF11 (ENSMMSG00000001004) #33 GRHL1 (ENSMMSG00000000910) #35 TAF1B (ENSMMSG00000000824) #36 Siberian musk deer MODERN SPECIES 1160 ENSMMSG00000023249 ENSMMSG00000023254 PRRG1 (ENSMMSG00000023259) ENSMMSG00000023268 #22 ENSMMSG00000023278 ENSMMSG00000023284 Eulipotyphla ANCESTRAL SPECIES ENSGT00940000155734 #22 Hedgehog MODERN SPECIES 6410 E2F6 (ENSEEUG00000001403) #22 Common shrew MODERN SPECIES 4984 ENSSARG00000004194 #22 Atlantogenata ANCESTRAL SPECIES 14 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Xenarthra ANCESTRAL SPECIES 1909 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 Sloth MODERN SPECIES 5696 E2F6 (ENSCHOG00000005114) #22 Armadillo DUPLICATION Armadillo MODERN SPECIES 2193 KCND1 (ENSDNOG00000033902) OTUD5 (ENSDNOG00000032210) PIM2 (ENSDNOG00000015644) SLC35A2 (ENSDNOG00000015641) PQBP1 (ENSDNOG00000015637) TIMM17B (ENSDNOG00000047305) PCSK1N (ENSDNOG00000045077) ERAS (ENSDNOG00000014657) HDAC6 (ENSDNOG00000002754) GATA1 (ENSDNOG00000046529) ENSDNOG00000040933 ENSDNOG00000010600 SUV39H1 (ENSDNOG00000024286) WAS (ENSDNOG00000034763) ENSDNOG00000031239 ENSDNOG00000043712 #22 WDR13 (ENSDNOG00000012751) ENSDNOG00000010420 TBC1D25 (ENSDNOG00000007135) ENSDNOG00000041551 Armadillo MODERN SPECIES 3706 ENSDNOG00000000258 #22 ROCK2 (ENSDNOG00000007448) #23 ENSDNOG00000009355 Afrotheria ANCESTRAL SPECIES 26 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Tenrec MODERN SPECIES 13823 ENSETEG00000006676 E2F6 (ENSETEG00000006678) #22 Afrotheria_a ANCESTRAL SPECIES 26 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00940000169919 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b.a.a ##37 Elephant MODERN SPECIES 197 MSGN1 (ENSLAFG00000015319) #9 GEN1 (ENSLAFG00000023255) #10 SMC6 (ENSLAFG00000007506) #11 VSNL1 (ENSLAFG00000015994) #12 RAD51AP2 (ENSLAFG00000025867) CYRIA (ENSLAFG00000014613) #14 MYCN (ENSLAFG00000015181) #15 DDX1 (ENSLAFG00000002213) #16 ENSLAFG00000030074 #17 ENSLAFG00000013044 #17 LRATD1 (ENSLAFG00000012514) #18 TRIB2 (ENSLAFG00000013795) #19 LPIN1 (ENSLAFG00000008202) #20 ENSLAFG00000016802 GREB1 (ENSLAFG00000003341) #21 E2F6 (ENSLAFG00000021573) #22 ROCK2 (ENSLAFG00000007153) #23 SLC66A3 (ENSLAFG00000025769) #24 C2orf50 (ENSLAFG00000026090) #25 ENSLAFG00000026811 KCNF1 (ENSLAFG00000008774) #26 PDIA6 (ENSLAFG00000012281) #27 ATP6V1C2 (ENSLAFG00000022630) #28 NOL10 (ENSLAFG00000010489) #29 ODC1 (ENSLAFG00000005330) #30 HPCAL1 (ENSLAFG00000004069) #31 RRM2 (ENSLAFG00000003627) #32 ENSLAFG00000026037 KLF11 (ENSLAFG00000032182) #33 GRHL1 (ENSLAFG00000009330) #35 TAF1B (ENSLAFG00000000782) #36 Hyrax MODERN SPECIES 5244 E2F6 (ENSPCAG00000006241) #22 Marsupialia DUPLICATION Marsupialia DUPLICATION Marsupialia ANCESTRAL SPECIES 19 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a Opossum DUPLICATION Opossum MODERN SPECIES 2 TTR (ENSMODG00000010932) DSG2 (ENSMODG00000010945) DSG3 (ENSMODG00000011018) DSG4 (ENSMODG00000038707) DSG1 (ENSMODG00000011042) DSC1 (ENSMODG00000011082) DSC2 (ENSMODG00000011103) DSC3 (ENSMODG00000011124) ENSMODG00000011133 ENSMODG00000048348 ERAP1 (ENSMODG00000020072) ENSMODG00000020075 PCSK1 (ENSMODG00000020079) ENSMODG00000020082 ENSMODG00000049853 ENSMODG00000046286 #22 ELL2 (ENSMODG00000020086) ENSMODG00000039521 GLRX (ENSMODG00000045828) RHOBTB3 (ENSMODG00000020089) ENSMODG00000020090 SPATA9 (ENSMODG00000020092) RFESD (ENSMODG00000020093) GPR150 (ENSMODG00000036931) ARSK (ENSMODG00000020099) SKIC3 (ENSMODG00000020106) ENSMODG00000020109 ENSMODG00000020113 MCTP1 (ENSMODG00000020121) SLF1 (ENSMODG00000020124) KIAA0825 (ENSMODG00000020128) Opossum MODERN SPECIES PRNP (ENSMODG00000011569) TGFA (ENSMODG00000011562) ENSMODG00000011533 ENSMODG00000011528 PCYOX1 (ENSMODG00000011522) TIA1 (ENSMODG00000011515) C2orf42 (ENSMODG00000011505) MXD1 (ENSMODG00000011481) SNRNP27 (ENSMODG00000011407) ADD2 (ENSMODG00000011394) ENSMODG00000011333 HK2 (ENSMODG00000011328) POLE4 (ENSMODG00000011284) TACR1 (ENSMODG00000011268) GREB1 (ENSMODG00000011187) #21 ENSMODG00000011128 #22 ENSMODG00000040529 #22 ENSMODG00000038278 #22 MAK16 (ENSMODG00000011096) TTI2 (ENSMODG00000011073) ENSMODG00000042605 RNF122 (ENSMODG00000011059) DUSP26 (ENSMODG00000011051) ENSMODG00000023186 ENSMODG00000023184 ENSMODG00000046726 ENSMODG00000028692 UNC5D (ENSMODG00000010980) ENSMODG00000050376 ENSMODG00000045103 ENSMODG00000047823 Marsupialia_b ANCESTRAL SPECIES 9 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a Tasmanian devil MODERN SPECIES 1 ENSSHAG00000029721 ENSSHAG00000027641 ENSSHAG00000012319 SNRPG (ENSSHAG00000031755) PCYOX1 (ENSSHAG00000020850) TIA1 (ENSSHAG00000012544) C2orf42 (ENSSHAG00000021724) ASPRV1 (ENSSHAG00000004646) ENSSHAG00000028045 ENSSHAG00000020701 ENSSHAG00000008583 ENSSHAG00000010027 ENSSHAG00000030671 ENSSHAG00000025383 ENSSHAG00000004743 #21 ENSSHAG00000024456 #22 ENSSHAG00000007275 #22 ENSSHAG00000030276 #22 MAK16 (ENSSHAG00000007593) TTI2 (ENSSHAG00000007730) RNF122 (ENSSHAG00000008057) DUSP26 (ENSSHAG00000023682) ENSSHAG00000023368 UNC5D (ENSSHAG00000012207) KCNU1 (ENSSHAG00000011303) ZNF703 (ENSSHAG00000027883) ERLIN2 (ENSSHAG00000016369) PLPBP (ENSSHAG00000016447) ADGRA2 (ENSSHAG00000016544) BRF2 (ENSSHAG00000011928) ENSSHAG00000030221 Diprotodontia ANCESTRAL SPECIES 2 ENSGT00510000049083.b ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 Wallaby MODERN SPECIES 7728 ENSMEUG00000007957 #22 Diprotodontia_a ANCESTRAL SPECIES 2 ENSGT00510000049083.b ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 koala MODERN SPECIES 20 TGFA (ENSPCIG00000013095) ENSPCIG00000013093 ENSPCIG00000034187 ENSPCIG00000022813 PCYOX1 (ENSPCIG00000013085) TIA1 (ENSPCIG00000013084) C2orf42 (ENSPCIG00000013083) ASPRV1 (ENSPCIG00000027988) MXD1 (ENSPCIG00000032401) SNRNP27 (ENSPCIG00000027990) ADD2 (ENSPCIG00000027991) HK2 (ENSPCIG00000027993) POLE4 (ENSPCIG00000031861) TACR1 (ENSPCIG00000027998) GREB1 (ENSPCIG00000027999) #21 ENSPCIG00000028000 #22 ENSPCIG00000028003 #22 MAK16 (ENSPCIG00000028005) TTI2 (ENSPCIG00000028006) RNF122 (ENSPCIG00000034986) DUSP26 (ENSPCIG00000028181) ENSPCIG00000015650 UNC5D (ENSPCIG00000011973) ENSPCIG00000033834 ENSPCIG00000007142 ZNF703 (ENSPCIG00000035170) ERLIN2 (ENSPCIG00000008913) PLPBP (ENSPCIG00000008908) ADGRA2 (ENSPCIG00000008895) BRF2 (ENSPCIG00000008891) RAB11FIP1 (ENSPCIG00000008888) Common wonbat MODERN SPECIES 1017 PRNP (ENSVURG00010011920) TGFA (ENSVURG00010011914) ENSVURG00010011904 ENSVURG00010011897 PCYOX1 (ENSVURG00010011890) TIA1 (ENSVURG00010011866) C2orf42 (ENSVURG00010011848) ASPRV1 (ENSVURG00010011841) MXD1 (ENSVURG00010011831) SNRNP27 (ENSVURG00010011813) ADD2 (ENSVURG00010011797) HK2 (ENSVURG00010011774) POLE4 (ENSVURG00010011762) TACR1 (ENSVURG00010011752) GREB1 (ENSVURG00010011701) #21 E2F6 (ENSVURG00010011677) #22 MAK16 (ENSVURG00010011670) TTI2 (ENSVURG00010011659) RNF122 (ENSVURG00010011653) DUSP26 (ENSVURG00010011646) ENSVURG00010011635 UNC5D (ENSVURG00010011273) ENSVURG00010011231 ENSVURG00010011221 ENSVURG00010011215 ZNF703 (ENSVURG00010011201) ERLIN2 (ENSVURG00010011180) PLPBP (ENSVURG00010011165) ADGRA2 (ENSVURG00010010473) BRF2 (ENSVURG00010010438) ENSVURG00010010429 Marsupialia ANCESTRAL SPECIES 19 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 Opossum MODERN SPECIES TGFA (ENSMODG00000011562) ENSMODG00000011533 ENSMODG00000011528 PCYOX1 (ENSMODG00000011522) TIA1 (ENSMODG00000011515) C2orf42 (ENSMODG00000011505) MXD1 (ENSMODG00000011481) SNRNP27 (ENSMODG00000011407) ADD2 (ENSMODG00000011394) ENSMODG00000011333 HK2 (ENSMODG00000011328) POLE4 (ENSMODG00000011284) TACR1 (ENSMODG00000011268) GREB1 (ENSMODG00000011187) #21 ENSMODG00000011128 #22 ENSMODG00000040529 #22 ENSMODG00000038278 #22 MAK16 (ENSMODG00000011096) TTI2 (ENSMODG00000011073) ENSMODG00000042605 RNF122 (ENSMODG00000011059) DUSP26 (ENSMODG00000011051) ENSMODG00000023186 ENSMODG00000023184 ENSMODG00000046726 ENSMODG00000028692 UNC5D (ENSMODG00000010980) ENSMODG00000050376 ENSMODG00000045103 ENSMODG00000047823 ZNF703 (ENSMODG00000010894) Marsupialia_b ANCESTRAL SPECIES 9 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 Tasmanian devil MODERN SPECIES 1 ENSSHAG00000027641 ENSSHAG00000012319 SNRPG (ENSSHAG00000031755) PCYOX1 (ENSSHAG00000020850) TIA1 (ENSSHAG00000012544) C2orf42 (ENSSHAG00000021724) ASPRV1 (ENSSHAG00000004646) ENSSHAG00000028045 ENSSHAG00000020701 ENSSHAG00000008583 ENSSHAG00000010027 ENSSHAG00000030671 ENSSHAG00000025383 ENSSHAG00000004743 #21 ENSSHAG00000024456 #22 ENSSHAG00000007275 #22 ENSSHAG00000030276 #22 MAK16 (ENSSHAG00000007593) TTI2 (ENSSHAG00000007730) RNF122 (ENSSHAG00000008057) DUSP26 (ENSSHAG00000023682) ENSSHAG00000023368 UNC5D (ENSSHAG00000012207) KCNU1 (ENSSHAG00000011303) ZNF703 (ENSSHAG00000027883) ERLIN2 (ENSSHAG00000016369) PLPBP (ENSSHAG00000016447) ADGRA2 (ENSSHAG00000016544) BRF2 (ENSSHAG00000011928) ENSSHAG00000030221 ENSSHAG00000016864 Diprotodontia ANCESTRAL SPECIES 2 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 ENSGT00390000010474 Diprotodontia_a ANCESTRAL SPECIES 2 ENSGT00940000160058 ENSGT00390000006707 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 ENSGT00390000010474 koala MODERN SPECIES 20 ENSPCIG00000013093 ENSPCIG00000034187 ENSPCIG00000022813 PCYOX1 (ENSPCIG00000013085) TIA1 (ENSPCIG00000013084) C2orf42 (ENSPCIG00000013083) ASPRV1 (ENSPCIG00000027988) MXD1 (ENSPCIG00000032401) SNRNP27 (ENSPCIG00000027990) ADD2 (ENSPCIG00000027991) HK2 (ENSPCIG00000027993) POLE4 (ENSPCIG00000031861) TACR1 (ENSPCIG00000027998) GREB1 (ENSPCIG00000027999) #21 ENSPCIG00000028000 #22 ENSPCIG00000028003 #22 MAK16 (ENSPCIG00000028005) TTI2 (ENSPCIG00000028006) RNF122 (ENSPCIG00000034986) DUSP26 (ENSPCIG00000028181) ENSPCIG00000015650 UNC5D (ENSPCIG00000011973) ENSPCIG00000033834 ENSPCIG00000007142 ZNF703 (ENSPCIG00000035170) ERLIN2 (ENSPCIG00000008913) PLPBP (ENSPCIG00000008908) ADGRA2 (ENSPCIG00000008895) BRF2 (ENSPCIG00000008891) RAB11FIP1 (ENSPCIG00000008888) GOT1L1 (ENSPCIG00000008886) Marsupialia ANCESTRAL SPECIES 19 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 Marsupialia_b ANCESTRAL SPECIES 9 ENSGT00510000046985 ENSGT00390000011206.a ENSGT00940000154962.A ENSGT00390000011031 ENSGT00390000017260 ENSGT00940000159446 ENSGT00730000111237 ENSGT00940000159299 ENSGT00440000033552 ENSGT00950000182787.C ENSGT00940000160888 ENSGT00940000153745.a ENSGT00390000008041.C #21 ENSGT00940000155734.a.a #22 ENSGT00940000155734.a.b #22 ENSGT00940000155734.b #22 ENSGT00390000012859 ENSGT00390000003878 ENSGT00940000159152.d ENSGT00940000158107 ENSGT00950000182815.a.a.b ENSGT00940000161817 ENSGT00390000014618.b ENSGT00390000014666.a ENSGT00390000004928 ENSGT00940000158941 ENSGT00390000002288 ENSGT00940000159649 ENSGT00950000183082.b.a ENSGT00940000158663 ENSGT00940000159932 Tasmanian devil MODERN SPECIES 1 ENSSHAG00000012319 SNRPG (ENSSHAG00000031755) PCYOX1 (ENSSHAG00000020850) TIA1 (ENSSHAG00000012544) C2orf42 (ENSSHAG00000021724) ASPRV1 (ENSSHAG00000004646) ENSSHAG00000028045 ENSSHAG00000020701 ENSSHAG00000008583 ENSSHAG00000010027 ENSSHAG00000030671 ENSSHAG00000025383 ENSSHAG00000004743 #21 ENSSHAG00000024456 #22 ENSSHAG00000007275 #22 ENSSHAG00000030276 #22 MAK16 (ENSSHAG00000007593) TTI2 (ENSSHAG00000007730) RNF122 (ENSSHAG00000008057) DUSP26 (ENSSHAG00000023682) ENSSHAG00000023368 UNC5D (ENSSHAG00000012207) KCNU1 (ENSSHAG00000011303) ZNF703 (ENSSHAG00000027883) ERLIN2 (ENSSHAG00000016369) PLPBP (ENSSHAG00000016447) ADGRA2 (ENSSHAG00000016544) BRF2 (ENSSHAG00000011928) ENSSHAG00000030221 ENSSHAG00000016864 ADRB3 (ENSSHAG00000025094) Opossum DUPLICATION Opossum MODERN SPECIES 627 ENSMODG00000009077 ENSMODG00000009064 ENSMODG00000036377 PCDH19 (ENSMODG00000009008) TNMD (ENSMODG00000008987) ENSMODG00000017489 ENSMODG00000045389 ENSMODG00000017486 ENSMODG00000025187 ENSMODG00000049110 ENSMODG00000017482 ENSMODG00000017480 ENSMODG00000025190 ENSMODG00000017473 ENSMODG00000044797 ENSMODG00000029644 #22 ENSMODG00000017465 ENSMODG00000025192 ENSMODG00000017423 ENSMODG00000027595 ENSMODG00000022861 SH3BGRL (ENSMODG00000004322) BRWD3 (ENSMODG00000004308) ENSMODG00000014584 ENSMODG00000004273 TBX22 (ENSMODG00000004255) ENSMODG00000043255 ENSMODG00000043149 ENSMODG00000004233 GPR174 (ENSMODG00000022863) ENSMODG00000004214 Opossum MODERN SPECIES ENSMODG00000011533 ENSMODG00000011528 PCYOX1 (ENSMODG00000011522) TIA1 (ENSMODG00000011515) C2orf42 (ENSMODG00000011505) MXD1 (ENSMODG00000011481) SNRNP27 (ENSMODG00000011407) ADD2 (ENSMODG00000011394) ENSMODG00000011333 HK2 (ENSMODG00000011328) POLE4 (ENSMODG00000011284) TACR1 (ENSMODG00000011268) GREB1 (ENSMODG00000011187) #21 ENSMODG00000011128 #22 ENSMODG00000040529 #22 ENSMODG00000038278 #22 MAK16 (ENSMODG00000011096) TTI2 (ENSMODG00000011073) ENSMODG00000042605 RNF122 (ENSMODG00000011059) DUSP26 (ENSMODG00000011051) ENSMODG00000023186 ENSMODG00000023184 ENSMODG00000046726 ENSMODG00000028692 UNC5D (ENSMODG00000010980) ENSMODG00000050376 ENSMODG00000045103 ENSMODG00000047823 ZNF703 (ENSMODG00000010894) ERLIN2 (ENSMODG00000010889) Platypus MODERN SPECIES NT5C1B (ENSOANG00000007019) RDH14 (ENSOANG00000049985) #7 KCNS3 (ENSOANG00000014360) #8 ENSOANG00000002187 ENSOANG00000039008 ENSOANG00000010714 #11 VSNL1 (ENSOANG00000040965) #12 CYRIA (ENSOANG00000050664) #14 MYCN (ENSOANG00000042652) #15 DDX1 (ENSOANG00000005450) #16 NBAS (ENSOANG00000004483) #17 LRATD1 (ENSOANG00000007163) #18 TRIB2 (ENSOANG00000001757) #19 LPIN1 (ENSOANG00000002670) #20 GREB1 (ENSOANG00000002667) #21 ENSOANG00000002666 #22 ROCK2 (ENSOANG00000002665) #23 SLC66A3 (ENSOANG00000002664) #24 C2orf50 (ENSOANG00000001088) #25 PDIA6 (ENSOANG00000014500) #27 ATP6V1C2 (ENSOANG00000014499) #28 NOL10 (ENSOANG00000014497) #29 ODC1 (ENSOANG00000002322) #30 HPCAL1 (ENSOANG00000050538) #31 RRM2 (ENSOANG00000005507) #32 SLC17A5 (ENSOANG00000012352) ENSOANG00000043962 MTO1 (ENSOANG00000003443) ENSOANG00000013441 ENSOANG00000006467 KCNQ5 (ENSOANG00000003444) Sauria ANCESTRAL SPECIES 1 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Lepidosauria ANCESTRAL SPECIES ENSGT00940000160181 #7 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00960000192062 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 tuatara DUPLICATION tuatara MODERN SPECIES 635 LPIN1 (ENSSPUG00000000067) #20 GREB1 (ENSSPUG00000000138) #21 ENSSPUG00000000245 #22 ENSSPUG00000000255 #22 ENSSPUG00000000264 ENSSPUG00000000272 #23 ENSSPUG00000000278 #23 SLC66A3 (ENSSPUG00000000343) #24 tuatara MODERN SPECIES 635 LPIN1 (ENSSPUG00000000067) #20 GREB1 (ENSSPUG00000000138) #21 ENSSPUG00000000245 #22 ENSSPUG00000000255 #22 ENSSPUG00000000264 ENSSPUG00000000272 #23 ENSSPUG00000000278 #23 SLC66A3 (ENSSPUG00000000343) #24 Episquamata ANCESTRAL SPECIES ENSGT00940000155745 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00960000192062 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Laterata ANCESTRAL SPECIES 13 ENSGT00940000160181 #7 ENSGT00940000155745 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Common wall lizard MODERN SPECIES 11 CILK1 (ENSPMRG00000004130) ENSPMRG00000004127 ENSPMRG00000004120 ENSPMRG00000004100 CYRIA (ENSPMRG00000004077) #14 ENSPMRG00000004072 MYCN (ENSPMRG00000004070) #15 DDX1 (ENSPMRG00000004051) #16 NBAS (ENSPMRG00000003021) #17 LRATD1 (ENSPMRG00000002649) #18 ENSPMRG00000002643 ENSPMRG00000002636 TRIB2 (ENSPMRG00000002631) #19 LPIN1 (ENSPMRG00000002595) #20 GREB1 (ENSPMRG00000002546) #21 E2F6 (ENSPMRG00000002524) #22 ROCK2 (ENSPMRG00000002407) #23 SLC66A3 (ENSPMRG00000002376) #24 C2orf50 (ENSPMRG00000002369) #25 KCNF1 (ENSPMRG00000011788) #26 PDIA6 (ENSPMRG00000011782) #27 ATP6V1C2 (ENSPMRG00000011774) #28 ODC1 (ENSPMRG00000011766) #30 HPCAL1 (ENSPMRG00000011758) #31 NOL10 (ENSPMRG00000011740) #29 RRM2 (ENSPMRG00000011731) #32 KLF11 (ENSPMRG00000011727) #33 GRHL1 (ENSPMRG00000011712) #35 TAF1B (ENSPMRG00000011702) #36 ENSPMRG00000011699 ENSPMRG00000011696 #37 Argentine black and white tegu MODERN SPECIES 43 KCNS3 (ENSSMRG00000022758) #8 MSGN1 (ENSSMRG00000022757) #9 GEN1 (ENSSMRG00000022756) #10 SMC6 (ENSSMRG00000022755) #11 VSNL1 (ENSSMRG00000022754) #12 ENSSMRG00000022753 CYRIA (ENSSMRG00000022751) #14 ENSSMRG00000022749 MYCN (ENSSMRG00000022746) #15 DDX1 (ENSSMRG00000022744) #16 NBAS (ENSSMRG00000022743) #17 LRATD1 (ENSSMRG00000022742) #18 TRIB2 (ENSSMRG00000022739) #19 LPIN1 (ENSSMRG00000022737) #20 GREB1 (ENSSMRG00000022736) #21 E2F6 (ENSSMRG00000022735) #22 SLC23A1 (ENSSMRG00000022734) PAIP2 (ENSSMRG00000022733) MATR3 (ENSSMRG00000022732) SIL1 (ENSSMRG00000022729) LRRTM2 (ENSSMRG00000022728) CTNNA1 (ENSSMRG00000022726) HSPA9 (ENSSMRG00000022725) ETF1 (ENSSMRG00000022724) FBXW11 (ENSSMRG00000022723) ENSSMRG00000022721 ENSSMRG00000022720 FGF18 (ENSSMRG00000022718) ENSSMRG00000022716 TLX3 (ENSSMRG00000022715) RANBP17 (ENSSMRG00000022710) Toxicofera ANCESTRAL SPECIES ENSGT00940000155745 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00960000192062 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Elapidae ANCESTRAL SPECIES ENSGT01090000260040.b.b.b.b #37 ENSGT00440000033827.c #36 ENSGT00940000157612 #35 ENSGT00940000155982 #33 ENSGT00390000011297 ENSGT00390000013305.a.a #32 ENSGT00940000154645.A #31 ENSGT00950000182995.e.a.a.a #30 ENSGT00390000007900 #29 ENSGT00390000004263.b #28 ENSGT00940000155646 #27 ENSGT00940000160213 #26 ENSGT00940000154459.B #25 ENSGT00940000153916.B #24 ENSGT01030000234517.D #23 ENSGT00940000155734 #22 ENSGT01010000229139 ENSGT00390000008041.C #21 ENSGT00940000157219 #20 ENSGT00950000182986.a.b.a #19 ENSGT00940000161165 #18 ENSGT00390000012474 #17 ENSGT00940000155678 #16 ENSGT00940000158432 #15 ENSGT00390000015159.a.b #14 ENSGT00940000156513 #12 ENSGT00550000074816.A.a.c #11 ENSGT00940000159266 #10 ENSGT00530000063712.a.b #9 ENSGT00940000155979 #8 ENSGT00940000155745 Elapidae_a ANCESTRAL SPECIES 6 ENSGT01090000260040.b.b.b.b #37 ENSGT00440000033827.c #36 ENSGT00940000157612 #35 ENSGT00940000155982 #33 ENSGT00390000011297 ENSGT00390000013305.a.a #32 ENSGT00940000154645.A #31 ENSGT00950000182995.e.a.a.a #30 ENSGT00390000007900 #29 ENSGT00390000004263.b #28 ENSGT00940000155646 #27 ENSGT00940000160213 #26 ENSGT00940000154459.B #25 ENSGT00940000153916.B #24 ENSGT01030000234517.D #23 ENSGT00940000155734 #22 ENSGT01010000229139 ENSGT00390000008041.C #21 ENSGT00940000157219 #20 ENSGT00950000182986.a.b.a #19 ENSGT00940000161165 #18 ENSGT00390000012474 #17 ENSGT00940000155678 #16 ENSGT00940000158432 #15 ENSGT00390000015159.a.b #14 ENSGT00940000156513 #12 ENSGT00550000074816.A.a.c #11 ENSGT00940000159266.e #10 ENSGT00530000063712.a.b #9 ENSGT00940000155979 #8 ENSGT00940000155745 Acanthophiinae ANCESTRAL SPECIES 8 ENSGT01090000260040.b.b.b.b #37 ENSGT00440000033827.c #36 ENSGT00940000157612 #35 ENSGT00940000155982 #33 ENSGT00390000011297 ENSGT00390000013305.a.a #32 ENSGT00940000154645.A #31 ENSGT00950000182995.e.a.a.a #30 ENSGT00390000007900 #29 ENSGT00390000004263.b #28 ENSGT00940000155646 #27 ENSGT00940000160213 #26 ENSGT00940000154459.B #25 ENSGT00940000153916.B #24 ENSGT01030000234517.D #23 ENSGT00940000155734 #22 ENSGT01010000229139 ENSGT00390000008041.C #21 ENSGT00940000157219.c #20 ENSGT00950000182986.a.b.a #19 ENSGT00940000161165 #18 ENSGT00390000012474 #17 ENSGT00940000155678 #16 ENSGT00940000158432 #15 ENSGT00390000015159.a.b #14 ENSGT00940000156513 #12 ENSGT00550000074816.A.a.c #11 ENSGT00940000159266.e #10 ENSGT00530000063712.a.b #9 ENSGT00940000155979 #8 ENSGT00940000155745 Mainland tiger snake MODERN SPECIES 61 YWHAQ (ENSNSUG00000020419) #37 TAF1B (ENSNSUG00000020418) #36 GRHL1 (ENSNSUG00000020417) #35 KLF11 (ENSNSUG00000020416) #33 MTO1 (ENSNSUG00000020415) RRM2 (ENSNSUG00000020414) #32 HPCAL1 (ENSNSUG00000020412) #31 ODC1 (ENSNSUG00000020411) #30 NOL10 (ENSNSUG00000020410) #29 ATP6V1C2 (ENSNSUG00000020409) #28 PDIA6 (ENSNSUG00000020408) #27 KCNF1 (ENSNSUG00000020407) #26 C2orf50 (ENSNSUG00000020406) #25 ENSNSUG00000020405 ROCK2 (ENSNSUG00000020375) #23 ENSNSUG00000020374 #22 GREB1 (ENSNSUG00000020373) #21 ENSNSUG00000020371 #20 ENSNSUG00000020370 #20 ENSNSUG00000020369 TRIB2 (ENSNSUG00000020368) #19 ENSNSUG00000020366 ENSNSUG00000020365 LRATD1 (ENSNSUG00000020363) #18 NBAS (ENSNSUG00000020362) #17 DDX1 (ENSNSUG00000020339) #16 MYCN (ENSNSUG00000020338) #15 CYRIA (ENSNSUG00000020335) #14 Eastern brown snake MODERN SPECIES 4 ENSPTXG00000012054 #36 ENSPTXG00000012055 #36 GRHL1 (ENSPTXG00000012057) #35 KLF11 (ENSPTXG00000012059) #33 MTO1 (ENSPTXG00000012060) RRM2 (ENSPTXG00000012071) #32 HPCAL1 (ENSPTXG00000012834) #31 ODC1 (ENSPTXG00000012836) #30 NOL10 (ENSPTXG00000012838) #29 ATP6V1C2 (ENSPTXG00000012840) #28 PDIA6 (ENSPTXG00000012842) #27 KCNF1 (ENSPTXG00000012843) #26 C2orf50 (ENSPTXG00000012845) #25 SLC66A3 (ENSPTXG00000012846) #24 ROCK2 (ENSPTXG00000012863) #23 E2F6 (ENSPTXG00000014503) #22 ENSPTXG00000014504 GREB1 (ENSPTXG00000014506) #21 LPIN1 (ENSPTXG00000014511) #20 TRIB2 (ENSPTXG00000014512) #19 LRATD1 (ENSPTXG00000014513) #18 NBAS (ENSPTXG00000014516) #17 DDX1 (ENSPTXG00000014521) #16 MYCN (ENSPTXG00000014526) #15 CYRIA (ENSPTXG00000014529) #14 VSNL1 (ENSPTXG00000014531) #12 SMC6 (ENSPTXG00000014533) #11 ENSPTXG00000014536 ENSPTXG00000014537 #10 MSGN1 (ENSPTXG00000014539) #9 KCNS3 (ENSPTXG00000014540) #8 Blue-lipped sea krait MODERN SPECIES 5184 ROCK2 (ENSLLTG00000007823) #23 E2F6 (ENSLLTG00000007623) #22 Indian cobra MODERN SPECIES KLF11 (ENSNNAG00000012239) #33 ENSNNAG00000012268 ENSNNAG00000012297 ENSNNAG00000012340 ENSNNAG00000012348 RRM2 (ENSNNAG00000012363) #32 HPCAL1 (ENSNNAG00000012397) #31 ODC1 (ENSNNAG00000012411) #30 NOL10 (ENSNNAG00000012445) #29 ATP6V1C2 (ENSNNAG00000012518) #28 PDIA6 (ENSNNAG00000012553) #27 KCNF1 (ENSNNAG00000012626) #26 C2orf50 (ENSNNAG00000012650) #25 SLC66A3 (ENSNNAG00000012672) #24 ROCK2 (ENSNNAG00000012714) #23 E2F6 (ENSNNAG00000004227) #22 ENSNNAG00000004249 GREB1 (ENSNNAG00000004275) #21 LPIN1 (ENSNNAG00000004384) #20 TRIB2 (ENSNNAG00000004479) #19 LRATD1 (ENSNNAG00000004490) #18 NBAS (ENSNNAG00000004531) #17 DDX1 (ENSNNAG00000004957) #16 MYCN (ENSNNAG00000005197) #15 CYRIA (ENSNNAG00000005209) #14 ENSNNAG00000005240 ENSNNAG00000005266 VSNL1 (ENSNNAG00000005283) #12 SMC6 (ENSNNAG00000005310) #11 ENSNNAG00000005468 #10 MSGN1 (ENSNNAG00000005477) #9 Lizard MODERN SPECIES MYCN (ENSACAG00000011351) #15 DDX1 (ENSACAG00000011036) #16 NBAS (ENSACAG00000010861) #17 ENSACAG00000040466 ENSACAG00000036037 ENSACAG00000042544 ENSACAG00000038844 ENSACAG00000036783 LRATD1 (ENSACAG00000000402) #18 ENSACAG00000038536 TRIB2 (ENSACAG00000036134) #19 LPIN1 (ENSACAG00000000325) #20 GREB1 (ENSACAG00000000267) #21 ENSACAG00000035631 ENSACAG00000042924 E2F6 (ENSACAG00000000263) #22 ENSACAG00000034810 ENSACAG00000044307 ENSACAG00000042387 ROCK2 (ENSACAG00000000198) #23 SLC66A3 (ENSACAG00000039706) #24 C2orf50 (ENSACAG00000000194) #25 PDIA6 (ENSACAG00000012985) #27 ATP6V1C2 (ENSACAG00000012893) #28 NOL10 (ENSACAG00000012738) #29 ODC1 (ENSACAG00000012600) #30 HPCAL1 (ENSACAG00000012561) #31 RRM2 (ENSACAG00000000112) #32 KLF11 (ENSACAG00000000128) #33 GRHL1 (ENSACAG00000000132) #35 ENSACAG00000040408 Archelosauria ANCESTRAL SPECIES 1 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Cryptodira ANCESTRAL SPECIES 1 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.jb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Testudinoidea ANCESTRAL SPECIES 12 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.jb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219.a #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Emydidae ANCESTRAL SPECIES 8 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.jb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219.a #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT01050000247847 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Three-toed box turtle MODERN SPECIES 15 KCNS3 (ENSTMTG00000004528) #8 MSGN1 (ENSTMTG00000004516) #9 GEN1 (ENSTMTG00000004477) #10 SMC6 (ENSTMTG00000003697) #11 VSNL1 (ENSTMTG00000003601) #12 RAD51AP2 (ENSTMTG00000003579) CYRIA (ENSTMTG00000003533) #14 ENSTMTG00000003512 #15 DDX1 (ENSTMTG00000003436) #16 NBAS (ENSTMTG00000002506) #17 LRATD1 (ENSTMTG00000002408) #18 TRIB2 (ENSTMTG00000002404) #19 LPIN1 (ENSTMTG00000002382) #20 ENSTMTG00000002372 GREB1 (ENSTMTG00000002344) #21 E2F6 (ENSTMTG00000002335) #22 ROCK2 (ENSTMTG00000002325) #23 C2orf50 (ENSTMTG00000002318) #25 KCNF1 (ENSTMTG00000002317) #26 PDIA6 (ENSTMTG00000002306) #27 ATP6V1C2 (ENSTMTG00000002250) #28 NOL10 (ENSTMTG00000002231) #29 ODC1 (ENSTMTG00000002221) #30 HPCAL1 (ENSTMTG00000002212) #31 RRM2 (ENSTMTG00000002199) #32 KLF11 (ENSTMTG00000002194) #33 ENSTMTG00000002187 #35 ENSTMTG00000002182 #35 TAF1B (ENSTMTG00000002170) #36 YWHAQ (ENSTMTG00000002159) #37 ADAM17 (ENSTMTG00000002145) painted turtle MODERN SPECIES 2390 RDH14 (ENSCPBG00000013290) #7 KCNS3 (ENSCPBG00000013292) #8 ENSCPBG00000013295 MSGN1 (ENSCPBG00000013298) #9 GEN1 (ENSCPBG00000013299) #10 SMC6 (ENSCPBG00000013302) #11 VSNL1 (ENSCPBG00000013304) #12 CYRIA (ENSCPBG00000013312) #14 ENSCPBG00000013321 #15 DDX1 (ENSCPBG00000013330) #16 NBAS (ENSCPBG00000013977) #17 LRATD1 (ENSCPBG00000013990) #18 TRIB2 (ENSCPBG00000013994) #19 LPIN1 (ENSCPBG00000014000) #20 GREB1 (ENSCPBG00000014004) #21 E2F6 (ENSCPBG00000014007) #22 ROCK2 (ENSCPBG00000014009) #23 SLC66A3 (ENSCPBG00000014025) #24 C2orf50 (ENSCPBG00000014027) #25 KCNF1 (ENSCPBG00000014030) #26 PDIA6 (ENSCPBG00000014031) #27 ATP6V1C2 (ENSCPBG00000014032) #28 RRM2 (ENSCPBG00000014047) #32 ENSCPBG00000014048 KLF11 (ENSCPBG00000014051) #33 GRHL1 (ENSCPBG00000014054) #35 TAF1B (ENSCPBG00000014058) #36 YWHAQ (ENSCPBG00000014061) #37 ADAM17 (ENSCPBG00000014063) IAH1 (ENSCPBG00000014070) CPSF3 (ENSCPBG00000014074) Testudinidae ANCESTRAL SPECIES 10 ENSGT00940000160181 #7 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432.jb.a #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219.a #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Goode s thornscrub tortoise MODERN SPECIES 17 MSGN1 (ENSGEVG00005006020) #9 GEN1 (ENSGEVG00005006047) #10 SMC6 (ENSGEVG00005006087) #11 VSNL1 (ENSGEVG00005006120) #12 RAD51AP2 (ENSGEVG00005006144) CYRIA (ENSGEVG00005006179) #14 ENSGEVG00005006200 #15 DDX1 (ENSGEVG00005006272) #16 NBAS (ENSGEVG00005006521) #17 ENSGEVG00005007207 LRATD1 (ENSGEVG00005007216) #18 TRIB2 (ENSGEVG00005007232) #19 ENSGEVG00005007261 LPIN1 (ENSGEVG00005007279) #20 GREB1 (ENSGEVG00005007324) #21 E2F6 (ENSGEVG00005007439) #22 ROCK2 (ENSGEVG00005007467) #23 SLC66A3 (ENSGEVG00005007519) #24 C2orf50 (ENSGEVG00005007561) #25 KCNF1 (ENSGEVG00005007578) #26 PDIA6 (ENSGEVG00005007586) #27 ATP6V1C2 (ENSGEVG00005007637) #28 NOL10 (ENSGEVG00005007769) #29 ODC1 (ENSGEVG00005007862) #30 HPCAL1 (ENSGEVG00005007881) #31 RRM2 (ENSGEVG00005007899) #32 KLF11 (ENSGEVG00005007934) #33 GRHL1 (ENSGEVG00005008039) #35 TAF1B (ENSGEVG00005008345) #36 YWHAQ (ENSGEVG00005008366) #37 ADAM17 (ENSGEVG00005008380) Abingdon island giant tortoise MODERN SPECIES 1684 ENSCABG00000019152 #20 ENSCABG00000019154 #20 GREB1 (ENSCABG00000019155) #21 E2F6 (ENSCABG00000019157) #22 ROCK2 (ENSCABG00000019159) #23 ENSCABG00000019163 SLC66A3 (ENSCABG00000019165) #24 C2orf50 (ENSCABG00000019167) #25 KCNF1 (ENSCABG00000019170) #26 Chinese turtle MODERN SPECIES 2229 ENSPSIG00000015460 ENSPSIG00000015188 #17 ENSPSIG00000001770 TRIB2 (ENSPSIG00000014705) #19 LPIN1 (ENSPSIG00000014570) #20 ENSPSIG00000001765 GREB1 (ENSPSIG00000014417) #21 E2F6 (ENSPSIG00000014094) #22 ROCK2 (ENSPSIG00000010324) #23 SLC66A3 (ENSPSIG00000009943) #24 C2orf50 (ENSPSIG00000009878) #25 KCNF1 (ENSPSIG00000001763) #26 PDIA6 (ENSPSIG00000006847) #27 ATP6V1C2 (ENSPSIG00000015716) #28 NOL10 (ENSPSIG00000015359) #29 ODC1 (ENSPSIG00000014299) #30 Archosauria ANCESTRAL SPECIES 3 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Australian saltwater crocodile MODERN SPECIES 38 KCNS3 (ENSCPRG00005005307) #8 MSGN1 (ENSCPRG00005005322) #9 GEN1 (ENSCPRG00005005337) #10 ENSCPRG00005005424 #11 ENSCPRG00005005504 #11 VSNL1 (ENSCPRG00005005557) #12 ENSCPRG00005005559 CYRIA (ENSCPRG00005005582) #14 MYCN (ENSCPRG00005005639) #15 DDX1 (ENSCPRG00005005666) #16 NBAS (ENSCPRG00005005782) #17 ENSCPRG00005005922 TRIB2 (ENSCPRG00005005953) #19 LPIN1 (ENSCPRG00005005996) #20 GREB1 (ENSCPRG00005006077) #21 ENSCPRG00005006100 #22 ROCK2 (ENSCPRG00005006216) #23 ENSCPRG00005006542 SLC66A3 (ENSCPRG00005006550) #24 C2orf50 (ENSCPRG00005006553) #25 KCNF1 (ENSCPRG00005006569) #26 PDIA6 (ENSCPRG00005006586) #27 ATP6V1C2 (ENSCPRG00005006593) #28 NOL10 (ENSCPRG00005006615) #29 ODC1 (ENSCPRG00005006625) #30 HPCAL1 (ENSCPRG00005006636) #31 RRM2 (ENSCPRG00005006653) #32 KLF11 (ENSCPRG00005006661) #33 GRHL1 (ENSCPRG00005006677) #35 TAF1B (ENSCPRG00005006808) #36 YWHAQ (ENSCPRG00005006856) #37 Aves ANCESTRAL SPECIES 10 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 African ostrich MODERN SPECIES 496 LPIN1 (ENSSCUG00000006650) #20 GREB1 (ENSSCUG00000006642) #21 E2F6 (ENSSCUG00000006634) #22 ENSSCUG00000006632 ENSSCUG00000006619 #23 Neognathae ANCESTRAL SPECIES 2 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Galloanserae ANCESTRAL SPECIES 2 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Anatidae ANCESTRAL SPECIES ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT01000000216411 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Pink-footed goose MODERN SPECIES 48 MYCN (ENSABRG00000001195) #15 DDX1 (ENSABRG00000001132) #16 NBAS (ENSABRG00000000865) #17 LRATD1 (ENSABRG00000000829) #18 ENSABRG00000000823 TRIB2 (ENSABRG00000000721) #19 LPIN1 (ENSABRG00000000615) #20 GREB1 (ENSABRG00000000348) #21 E2F6 (ENSABRG00000000297) #22 ROCK2 (ENSABRG00000000240) #23 SLC66A3 (ENSABRG00000000216) #24 C2orf50 (ENSABRG00000010843) #25 ENSABRG00000010830 KCNF1 (ENSABRG00000010814) #26 PDIA6 (ENSABRG00000010799) #27 ATP6V1C2 (ENSABRG00000010781) #28 NOL10 (ENSABRG00000010777) #29 ODC1 (ENSABRG00000010758) #30 HPCAL1 (ENSABRG00000010754) #31 RRM2 (ENSABRG00000010731) #32 KLF11 (ENSABRG00000010724) #33 GRHL1 (ENSABRG00000010717) #35 TAF1B (ENSABRG00000010705) #36 YWHAQ (ENSABRG00000010695) #37 Duck MODERN SPECIES 21 ENSAPLG00000012994 ENSAPLG00000031242 ASCC3 (ENSAPLG00000012589) SIM1 (ENSAPLG00000012534) ENSAPLG00000020003 PRDM13 (ENSAPLG00000027679) CCNC (ENSAPLG00000007635) ENSAPLG00000006518 USP45 (ENSAPLG00000007229) PNISR (ENSAPLG00000006740) ENSAPLG00000006613 FAXC (ENSAPLG00000006456) FBXL4 (ENSAPLG00000006412) LPIN1 (ENSAPLG00000013386) #20 GREB1 (ENSAPLG00000014229) #21 E2F6 (ENSAPLG00000012476) #22 ROCK2 (ENSAPLG00000011393) #23 SLC66A3 (ENSAPLG00000030742) #24 C2orf50 (ENSAPLG00000011213) #25 ENSAPLG00000001506 ENSAPLG00000027989 PDIA6 (ENSAPLG00000010864) #27 ATP6V1C2 (ENSAPLG00000010549) #28 NOL10 (ENSAPLG00000009885) #29 ODC1 (ENSAPLG00000009531) #30 RRM2 (ENSAPLG00000009301) #32 ENSAPLG00000030281 KLF11 (ENSAPLG00000009146) #33 GRHL1 (ENSAPLG00000008667) #35 TAF1B (ENSAPLG00000008537) #36 YWHAQ (ENSAPLG00000023697) #37 Phasianidae DUPLICATION Phasianidae ANCESTRAL SPECIES 3 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734.ab #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Japanese quail MODERN SPECIES 21 ENSCJPG00005011119 MSGN1 (ENSCJPG00005011118) #9 GEN1 (ENSCJPG00005011117) #10 SMC6 (ENSCJPG00005011116) #11 VSNL1 (ENSCJPG00005011115) #12 ENSCJPG00005011113 CYRIA (ENSCJPG00005011106) #14 MYCN (ENSCJPG00005011100) #15 DDX1 (ENSCJPG00005011093) #16 NBAS (ENSCJPG00005011080) #17 LRATD1 (ENSCJPG00005011069) #18 TRIB2 (ENSCJPG00005011061) #19 LPIN1 (ENSCJPG00005011058) #20 GREB1 (ENSCJPG00005011057) #21 ENSCJPG00005011056 E2F6 (ENSCJPG00005011055) #22 ROCK2 (ENSCJPG00005011054) #23 SLC66A3 (ENSCJPG00005011053) #24 C2orf50 (ENSCJPG00005011052) #25 KCNF1 (ENSCJPG00005011049) #26 PDIA6 (ENSCJPG00005011047) #27 ATP6V1C2 (ENSCJPG00005011046) #28 NOL10 (ENSCJPG00005011045) #29 ODC1 (ENSCJPG00005011044) #30 HPCAL1 (ENSCJPG00005011043) #31 RRM2 (ENSCJPG00005011038) #32 ENSCJPG00005011037 KLF11 (ENSCJPG00005011036) #33 GRHL1 (ENSCJPG00005011034) #35 TAF1B (ENSCJPG00005011032) #36 YWHAQ (ENSCJPG00005011031) #37 Phasianidae_b ANCESTRAL SPECIES 2 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734.ab #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Chicken MODERN SPECIES 22 ZPAX (ENSGALG00010003469) MSGN1 (ENSGALG00010003849) #9 GEN1 (ENSGALG00010002376) #10 SMC6 (ENSGALG00010002372) #11 VSNL1 (ENSGALG00010002364) #12 ENSGALG00010002344 FAM49A (ENSGALG00010002341) #14 MYCN (ENSGALG00010003652) #15 ENSGALG00010003639 DDX1 (ENSGALG00010003057) #16 NBAS (ENSGALG00010002952) #17 FAM84A (ENSGALG00010002918) #18 TRIB2 (ENSGALG00010002848) #19 LPIN1 (ENSGALG00010002832) #20 GREB1 (ENSGALG00010002758) #21 E2F6 (ENSGALG00010002730) #22 ROCK2 (ENSGALG00010002706) #23 SLC66A3 (ENSGALG00010002673) #24 C2orf50 (ENSGALG00010002657) #25 KCNF1 (ENSGALG00010002644) #26 PDIA6 (ENSGALG00010002609) #27 ATP6V1C2 (ENSGALG00010002590) #28 NOL10 (ENSGALG00010003525) #29 ODC (ENSGALG00010003604) #30 HPCAL1 (ENSGALG00010002474) #31 RRM2 (ENSGALG00010002462) #32 KLF11 (ENSGALG00010002444) #33 GRHL1 (ENSGALG00010002433) #35 TAF1B (ENSGALG00010004230) #36 YWHAQ (ENSGALG00010003375) #37 ADAM17 (ENSGALG00010003348) Turkey MODERN SPECIES 11 TAF1B (ENSMGAG00000014006) #36 ENSMGAG00000014007 #35 ENSMGAG00000017891 #35 ENSMGAG00000014008 #33 ENSMGAG00000014009 #32 ENSMGAG00000014010 #31 ENSMGAG00000014011 #30 ENSMGAG00000020117 #29 ENSMGAG00000014012 #29 ENSMGAG00000014014 #27 ENSMGAG00000014013 #28 ENSMGAG00000015960 #26 ENSMGAG00000018364 #25 ENSMGAG00000019027 #24 ENSMGAG00000014017 #23 ENSMGAG00000014018 #22 ENSMGAG00000020485 #22 ENSMGAG00000017517 #21 ENSMGAG00000014020 #21 ENSMGAG00000021232 #20 ENSMGAG00000019262 ENSMGAG00000013970 PXDN (ENSMGAG00000013971) ENSMGAG00000020317 ENSMGAG00000017551 ENSMGAG00000013967 ALKAL2 (ENSMGAG00000013966) ENSMGAG00000013965 SH3YL1 (ENSMGAG00000013964) FAM110C (ENSMGAG00000018640) FBXO25 (ENSMGAG00000013963) Phasianidae ANCESTRAL SPECIES ENSGT00940000155734.bb #22 Phasianidae_b ANCESTRAL SPECIES ENSGT00940000155734.bb #22 Turkey MODERN SPECIES 11 ENSMGAG00000014007 #35 ENSMGAG00000017891 #35 ENSMGAG00000014008 #33 ENSMGAG00000014009 #32 ENSMGAG00000014010 #31 ENSMGAG00000014011 #30 ENSMGAG00000020117 #29 ENSMGAG00000014012 #29 ENSMGAG00000014014 #27 ENSMGAG00000014013 #28 ENSMGAG00000015960 #26 ENSMGAG00000018364 #25 ENSMGAG00000019027 #24 ENSMGAG00000014017 #23 ENSMGAG00000014018 #22 ENSMGAG00000020485 #22 ENSMGAG00000017517 #21 ENSMGAG00000014020 #21 ENSMGAG00000021232 #20 ENSMGAG00000019262 ENSMGAG00000013970 PXDN (ENSMGAG00000013971) ENSMGAG00000020317 ENSMGAG00000017551 ENSMGAG00000013967 ALKAL2 (ENSMGAG00000013966) ENSMGAG00000013965 SH3YL1 (ENSMGAG00000013964) FAM110C (ENSMGAG00000018640) FBXO25 (ENSMGAG00000013963) TDRP (ENSMGAG00000013962) Neognathae_b ANCESTRAL SPECIES 1 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Neognathae_c ANCESTRAL SPECIES 10 ENSGT00940000160181 #7 ENSGT00940000155979 #8 ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Golden eagle MODERN SPECIES 6 MSGN1 (ENSACCG00020011146) #9 GEN1 (ENSACCG00020011155) #10 SMC6 (ENSACCG00020011179) #11 VSNL1 (ENSACCG00020011201) #12 ENSACCG00020011205 CYRIA (ENSACCG00020011233) #14 MYCN (ENSACCG00020011258) #15 DDX1 (ENSACCG00020011276) #16 NBAS (ENSACCG00020011318) #17 LRATD1 (ENSACCG00020011362) #18 ENSACCG00020011374 ENSACCG00020011382 TRIB2 (ENSACCG00020011397) #19 LPIN1 (ENSACCG00020011416) #20 GREB1 (ENSACCG00020011499) #21 E2F6 (ENSACCG00020011591) #22 ROCK2 (ENSACCG00020011682) #23 SLC66A3 (ENSACCG00020011809) #24 C2orf50 (ENSACCG00020011859) #25 KCNF1 (ENSACCG00020011878) #26 PDIA6 (ENSACCG00020011924) #27 ATP6V1C2 (ENSACCG00020012041) #28 NOL10 (ENSACCG00020012136) #29 ODC1 (ENSACCG00020012187) #30 HPCAL1 (ENSACCG00020012207) #31 RRM2 (ENSACCG00020012338) #32 KLF11 (ENSACCG00020012500) #33 ENSACCG00020012519 #35 TAF1B (ENSACCG00020012536) #36 YWHAQ (ENSACCG00020012565) #37 ADAM17 (ENSACCG00020012584) Kakapo MODERN SPECIES 23 NT5C1B (ENSSHBG00005009567) RDH14 (ENSSHBG00005009558) #7 KCNS3 (ENSSHBG00005009545) #8 MSGN1 (ENSSHBG00005009540) #9 ENSSHBG00005009523 #10 SMC6 (ENSSHBG00005009502) #11 VSNL1 (ENSSHBG00005009485) #12 CYRIA (ENSSHBG00005009457) #14 MYCN (ENSSHBG00005009434) #15 DDX1 (ENSSHBG00005009418) #16 NBAS (ENSSHBG00005008111) #17 LRATD1 (ENSSHBG00005007911) #18 TRIB2 (ENSSHBG00005007893) #19 LPIN1 (ENSSHBG00005007857) #20 GREB1 (ENSSHBG00005007448) #21 E2F6 (ENSSHBG00005007355) #22 ENSSHBG00005007333 #23 ENSSHBG00005007299 #23 SLC66A3 (ENSSHBG00005007268) #24 C2orf50 (ENSSHBG00005007249) #25 KCNF1 (ENSSHBG00005007231) #26 PDIA6 (ENSSHBG00005007211) #27 ATP6V1C2 (ENSSHBG00005007157) #28 NOL10 (ENSSHBG00005007121) #29 ODC1 (ENSSHBG00005007026) #30 HPCAL1 (ENSSHBG00005007002) #31 RRM2 (ENSSHBG00005006975) #32 KLF11 (ENSSHBG00005006947) #33 ENSSHBG00005006922 #35 ENSSHBG00005006892 #35 TAF1B (ENSSHBG00005006841) #36 Passeriformes ANCESTRAL SPECIES 2 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 ENSGT00390000008069 Great tit MODERN SPECIES 22 RDH14 (ENSPMJG00000012483) #7 KCNS3 (ENSPMJG00000012481) #8 MSGN1 (ENSPMJG00000012480) #9 GEN1 (ENSPMJG00000012479) #10 SMC6 (ENSPMJG00000012478) #11 VSNL1 (ENSPMJG00000012477) #12 ENSPMJG00000012476 CYRIA (ENSPMJG00000012475) #14 MYCN (ENSPMJG00000012473) #15 DDX1 (ENSPMJG00000012469) #16 NBAS (ENSPMJG00000012468) #17 LRATD1 (ENSPMJG00000012465) #18 TRIB2 (ENSPMJG00000012455) #19 LPIN1 (ENSPMJG00000012453) #20 GREB1 (ENSPMJG00000012451) #21 E2F6 (ENSPMJG00000012450) #22 ROCK2 (ENSPMJG00000012447) #23 SLC66A3 (ENSPMJG00000012442) #24 PDIA6 (ENSPMJG00000012436) #27 ATP6V1C2 (ENSPMJG00000012432) #28 NOL10 (ENSPMJG00000012429) #29 ODC1 (ENSPMJG00000012426) #30 HPCAL1 (ENSPMJG00000012424) #31 RRM2 (ENSPMJG00000012420) #32 KLF11 (ENSPMJG00000012416) #33 GRHL1 (ENSPMJG00000012412) #35 TAF1B (ENSPMJG00000012405) #36 YWHAQ (ENSPMJG00000012403) #37 ADAM17 (ENSPMJG00000012400) IAH1 (ENSPMJG00000012394) CPSF3 (ENSPMJG00000012393) Passeriformes_d ANCESTRAL SPECIES 2 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612.p #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 ENSGT00390000008069 Flycatcher DUPLICATION Flycatcher MODERN SPECIES 21 RDH14 (ENSFALG00000014908) #7 KCNS3 (ENSFALG00000014929) #8 MSGN1 (ENSFALG00000001820) #9 GEN1 (ENSFALG00000027943) #10 SMC6 (ENSFALG00000001824) #11 VSNL1 (ENSFALG00000027644) #12 ENSFALG00000001832 CYRIA (ENSFALG00000008685) #14 ENSFALG00000028783 #15 DDX1 (ENSFALG00000008696) #16 NBAS (ENSFALG00000008699) #17 LRATD1 (ENSFALG00000015040) #18 TRIB2 (ENSFALG00000028332) #19 LPIN1 (ENSFALG00000006735) #20 GREB1 (ENSFALG00000006718) #21 ENSFALG00000026316 #22 ENSFALG00000027375 #22 ROCK2 (ENSFALG00000006707) #23 SLC66A3 (ENSFALG00000024817) #24 KCNF1 (ENSFALG00000014627) #26 PDIA6 (ENSFALG00000006683) #27 ATP6V1C2 (ENSFALG00000006666) #28 NOL10 (ENSFALG00000006658) #29 ODC1 (ENSFALG00000006656) #30 HPCAL1 (ENSFALG00000006653) #31 RRM2 (ENSFALG00000022902) #32 ENSFALG00000027922 KLF11 (ENSFALG00000006648) #33 GRHL1 (ENSFALG00000006639) #35 TAF1B (ENSFALG00000006636) #36 YWHAQ (ENSFALG00000023362) #37 Flycatcher MODERN SPECIES 21 KCNS3 (ENSFALG00000014929) #8 MSGN1 (ENSFALG00000001820) #9 GEN1 (ENSFALG00000027943) #10 SMC6 (ENSFALG00000001824) #11 VSNL1 (ENSFALG00000027644) #12 ENSFALG00000001832 CYRIA (ENSFALG00000008685) #14 ENSFALG00000028783 #15 DDX1 (ENSFALG00000008696) #16 NBAS (ENSFALG00000008699) #17 LRATD1 (ENSFALG00000015040) #18 TRIB2 (ENSFALG00000028332) #19 LPIN1 (ENSFALG00000006735) #20 GREB1 (ENSFALG00000006718) #21 ENSFALG00000026316 #22 ENSFALG00000027375 #22 ROCK2 (ENSFALG00000006707) #23 SLC66A3 (ENSFALG00000024817) #24 KCNF1 (ENSFALG00000014627) #26 PDIA6 (ENSFALG00000006683) #27 ATP6V1C2 (ENSFALG00000006666) #28 NOL10 (ENSFALG00000006658) #29 ODC1 (ENSFALG00000006656) #30 HPCAL1 (ENSFALG00000006653) #31 RRM2 (ENSFALG00000022902) #32 ENSFALG00000027922 KLF11 (ENSFALG00000006648) #33 GRHL1 (ENSFALG00000006639) #35 TAF1B (ENSFALG00000006636) #36 YWHAQ (ENSFALG00000023362) #37 ADAM17 (ENSFALG00000006611) Passeriformes_g ANCESTRAL SPECIES 1 ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000205825 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612.o #35 ENSGT00940000157612.p #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 Medium ground finch DUPLICATION Medium ground finch MODERN SPECIES 21 NT5C1B (ENSGFOG00000010490) RDH14 (ENSGFOG00000010495) #7 KCNS3 (ENSGFOG00000010498) #8 GEN1 (ENSGFOG00000010501) #10 SMC6 (ENSGFOG00000010514) #11 VSNL1 (ENSGFOG00000010531) #12 CYRIA (ENSGFOG00000010538) #14 MYCN (ENSGFOG00000010546) #15 DDX1 (ENSGFOG00000010553) #16 NBAS (ENSGFOG00000010569) #17 LRATD1 (ENSGFOG00000010589) #18 TRIB2 (ENSGFOG00000010590) #19 LPIN1 (ENSGFOG00000005160) #20 GREB1 (ENSGFOG00000007462) #21 ENSGFOG00000007488 #22 ENSGFOG00000007490 #22 ROCK2 (ENSGFOG00000007498) #23 ENSGFOG00000007525 SLC66A3 (ENSGFOG00000007534) #24 KCNF1 (ENSGFOG00000007549) #26 PDIA6 (ENSGFOG00000007553) #27 ATP6V1C2 (ENSGFOG00000007570) #28 NOL10 (ENSGFOG00000007627) #29 ODC1 (ENSGFOG00000007655) #30 HPCAL1 (ENSGFOG00000007664) #31 RRM2 (ENSGFOG00000007690) #32 KLF11 (ENSGFOG00000007951) #33 ENSGFOG00000007956 #35 ENSGFOG00000007959 #35 TAF1B (ENSGFOG00000007971) #36 YWHAQ (ENSGFOG00000007990) #37 Medium ground finch MODERN SPECIES 21 OSR1 (ENSGFOG00000010486) NT5C1B (ENSGFOG00000010490) RDH14 (ENSGFOG00000010495) #7 KCNS3 (ENSGFOG00000010498) #8 GEN1 (ENSGFOG00000010501) #10 SMC6 (ENSGFOG00000010514) #11 VSNL1 (ENSGFOG00000010531) #12 CYRIA (ENSGFOG00000010538) #14 MYCN (ENSGFOG00000010546) #15 DDX1 (ENSGFOG00000010553) #16 NBAS (ENSGFOG00000010569) #17 LRATD1 (ENSGFOG00000010589) #18 TRIB2 (ENSGFOG00000010590) #19 LPIN1 (ENSGFOG00000005160) #20 GREB1 (ENSGFOG00000007462) #21 ENSGFOG00000007488 #22 ENSGFOG00000007490 #22 ROCK2 (ENSGFOG00000007498) #23 ENSGFOG00000007525 SLC66A3 (ENSGFOG00000007534) #24 KCNF1 (ENSGFOG00000007549) #26 PDIA6 (ENSGFOG00000007553) #27 ATP6V1C2 (ENSGFOG00000007570) #28 NOL10 (ENSGFOG00000007627) #29 ODC1 (ENSGFOG00000007655) #30 HPCAL1 (ENSGFOG00000007664) #31 RRM2 (ENSGFOG00000007690) #32 KLF11 (ENSGFOG00000007951) #33 ENSGFOG00000007956 #35 ENSGFOG00000007959 #35 TAF1B (ENSGFOG00000007971) #36 Passeroidea ANCESTRAL SPECIES ENSGT00940000155979 #8 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00470000042500 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00990000205825 ENSGT00940000153916.B #24 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612.o #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Common canary MODERN SPECIES 1 KCNS3 (ENSSCAG00000013262) #8 MSGN1 (ENSSCAG00000013255) #9 GEN1 (ENSSCAG00000013242) #10 SMC6 (ENSSCAG00000013216) #11 VSNL1 (ENSSCAG00000013204) #12 ENSSCAG00000013192 CYRIA (ENSSCAG00000013175) #14 ENSSCAG00000013165 #15 MYCN (ENSSCAG00000013162) #15 DDX1 (ENSSCAG00000013147) #16 NBAS (ENSSCAG00000012763) #17 LRATD1 (ENSSCAG00000012692) #18 TRIB2 (ENSSCAG00000012687) #19 LPIN1 (ENSSCAG00000012667) #20 GREB1 (ENSSCAG00000012639) #21 E2F6 (ENSSCAG00000012631) #22 ROCK2 (ENSSCAG00000012610) #23 SLC66A3 (ENSSCAG00000012565) #24 KCNF1 (ENSSCAG00000012548) #26 PDIA6 (ENSSCAG00000012514) #27 ATP6V1C2 (ENSSCAG00000012422) #28 NOL10 (ENSSCAG00000012402) #29 ODC1 (ENSSCAG00000012395) #30 HPCAL1 (ENSSCAG00000012381) #31 RRM2 (ENSSCAG00000012371) #32 KLF11 (ENSSCAG00000012362) #33 GRHL1 (ENSSCAG00000012341) #35 YWHAQ (ENSSCAG00000012308) #37 ADAM17 (ENSSCAG00000012301) IAH1 (ENSSCAG00000012295) CPSF3 (ENSSCAG00000012290) Zebra finch MODERN SPECIES 23 ENSTGUG00000013124 MSGN1 (ENSTGUG00000013122) #9 VSNL1 (ENSTGUG00000013109) #12 GEN1 (ENSTGUG00000013117) #10 SMC6 (ENSTGUG00000013110) #11 ENSTGUG00000019456 CYRIA (ENSTGUG00000013106) #14 MYCN (ENSTGUG00000013104) #15 ENSTGUG00000027142 #15 DDX1 (ENSTGUG00000013096) #16 NBAS (ENSTGUG00000013092) #17 LRATD1 (ENSTGUG00000013091) #18 TRIB2 (ENSTGUG00000013089) #19 LPIN1 (ENSTGUG00000013085) #20 GREB1 (ENSTGUG00000013081) #21 ENSTGUG00000013076 #22 ROCK2 (ENSTGUG00000013067) #23 ENSTGUG00000023758 SLC66A3 (ENSTGUG00000026462) #24 PDIA6 (ENSTGUG00000013056) #27 ATP6V1C2 (ENSTGUG00000013053) #28 NOL10 (ENSTGUG00000013047) #29 ODC1 (ENSTGUG00000013045) #30 HPCAL1 (ENSTGUG00000013044) #31 RRM2 (ENSTGUG00000013042) #32 KLF11 (ENSTGUG00000013041) #33 GRHL1 (ENSTGUG00000013038) #35 TAF1B (ENSTGUG00000013037) #36 YWHAQ (ENSTGUG00000013035) #37 ADAM17 (ENSTGUG00000013028) IAH1 (ENSTGUG00000013025) Anura ANCESTRAL SPECIES 32 ENSGT00940000163503.B ENSGT00530000063712.a.b #9 ENSGT00940000159266 #10 ENSGT00550000074816.A.a #11 ENSGT00940000156513 #12 ENSGT00960000192062 ENSGT00390000015159.a.b #14 ENSGT00940000158432 #15 ENSGT00940000155678 #16 ENSGT00390000012474 #17 ENSGT00940000161165 #18 ENSGT00950000182986.a.b.a #19 ENSGT00940000157219 #20 ENSGT01100000263518.A.a.a.b ENSGT00390000008041.C #21 ENSGT00940000155734 #22 ENSGT01030000234517.D #23 ENSGT00940000153916.B #24 ENSGT00940000154459.B #25 ENSGT00940000160213 #26 ENSGT00940000155646 #27 ENSGT00390000004263.b #28 ENSGT00390000007900 #29 ENSGT00950000182995.e.a.a.a #30 ENSGT00940000154645.A #31 ENSGT00390000013305.a.a #32 ENSGT00940000155982 #33 ENSGT00940000157612 #35 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.b #37 ENSGT00940000155443 Frog MODERN SPECIES 5 ENSXETG00000048120 cyria (ENSXETG00000015482) #14 ENSXETG00000040643 mycn (ENSXETG00000015485) #15 ddx1 (ENSXETG00000017825) #16 ENSXETG00000034873 nbas (ENSXETG00000017826) #17 ENSXETG00000045231 ENSXETG00000042956 lratd1 (ENSXETG00000012519) #18 trib2 (ENSXETG00000039993) #19 ENSXETG00000043743 lpin1 (ENSXETG00000020970) #20 ntsr2 (ENSXETG00000037844) greb1 (ENSXETG00000023793) #21 e2f6 (ENSXETG00000040751) #22 rock2 (ENSXETG00000023782) #23 slc66a3 (ENSXETG00000024438) #24 c2orf50 (ENSXETG00000023781) #25 ENSXETG00000041636 pgat (ENSXETG00000039468) KCNF1 (ENSXETG00000003508) #26 pdia6 (ENSXETG00000003512) #27 atp6v1c2 (ENSXETG00000003516) #28 nol10 (ENSXETG00000003518) #29 odc1 (ENSXETG00000003519) #30 hpcal1 (ENSXETG00000003521) #31 ENSXETG00000043226 rrm2.2 (ENSXETG00000036052) #32 MGC147302 (ENSXETG00000031276) klf11 (ENSXETG00000007013) #33 Leishan spiny toad MODERN SPECIES 7 ENSLLEG00000028933 ENSLLEG00000028924 NBAS (ENSLLEG00000027604) #17 ENSLLEG00000027478 ENSLLEG00000027466 ENSLLEG00000027457 ENSLLEG00000027435 LRATD1 (ENSLLEG00000027413) #18 TRIB2 (ENSLLEG00000027379) #19 ENSLLEG00000027356 ENSLLEG00000027325 LPIN1 (ENSLLEG00000027040) #20 NTSR2 (ENSLLEG00000026890) ENSLLEG00000026867 GREB1 (ENSLLEG00000026131) #21 E2F6 (ENSLLEG00000026054) #22 ROCK2 (ENSLLEG00000024556) #23 SLC66A3 (ENSLLEG00000024404) #24 ENSLLEG00000024376 C2orf50 (ENSLLEG00000024331) #25 ENSLLEG00000024324 HPCAL1 (ENSLLEG00000024240) #31 ENSLLEG00000024218 ODC1 (ENSLLEG00000023958) #30 NOL10 (ENSLLEG00000023018) #29 ATP6V1C2 (ENSLLEG00000022849) #28 PDIA6 (ENSLLEG00000022642) #27 ENSLLEG00000022599 KCNF1 (ENSLLEG00000022578) #26 ENSLLEG00000022561 RNF144A (ENSLLEG00000022290) Coelacanth MODERN SPECIES 1675 E2F6 (ENSLACG00000003098) #22 ASAP2 (ENSLACG00000006201) ITGB1BP1 (ENSLACG00000008015) CPSF3 (ENSLACG00000008308) IAH1 (ENSLACG00000022480) ADAM17 (ENSLACG00000009394) ENSLACG00000010467 Actinopterygii ANCESTRAL SPECIES 161 ENSGT00390000008195 ENSGT00390000003466 ENSGT00390000014122 ENSGT00940000159468 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000164359.b ENSGT00940000161652.b.b ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464 ENSGT00940000156714 ENSGT00940000173435 ENSGT01030000234564.a.a.a.a.b ENSGT00940000155734 #22 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.a ##37 ENSGT00440000033827 #36 Reedfish MODERN SPECIES 11 eipr1 (ENSECRG00000010355) trappc12 (ENSECRG00000010315) adi1 (ENSECRG00000010303) rnaseh1 (ENSECRG00000010293) rps7 (ENSECRG00000010266) colec11 (ENSECRG00000010258) allc (ENSECRG00000010240) ENSECRG00000010212 sox11a (ENSECRG00000010200) CMPK2 (ENSECRG00000010193) rsad2 (ENSECRG00000010187) rnf144aa (ENSECRG00000010177) id2a (ENSECRG00000010167) kidins220b (ENSECRG00000010109) mboat2b (ENSECRG00000010060) e2f6 (ENSECRG00000010036) #22 asap2a (ENSECRG00000009968) itgb1bp1 (ENSECRG00000009944) cpsf3 (ENSECRG00000009905) iah1 (ENSECRG00000009882) ywhaqb (ENSECRG00000009863) ##37 adam17a (ENSECRG00000009845) taf1b (ENSECRG00000009821) #36 grhl1 (ENSECRG00000009767) #35 klf11a (ENSECRG00000009752) #33 rrm2 (ENSECRG00000009736) #32 ENSECRG00000009725 ENSECRG00000009717 hpcal1 (ENSECRG00000009705) #31 odc1 (ENSECRG00000009691) #30 nol10 (ENSECRG00000009627) #29 Neopterygii ANCESTRAL SPECIES 150 ENSGT00390000008195 ENSGT00390000003466 ENSGT00390000014122 ENSGT00940000159468 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000164359.b ENSGT00940000161652.b.b ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464 ENSGT00940000156714 ENSGT00940000173435 ENSGT01030000234564.a.a.a.a.b ENSGT00940000155734 #22 ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699 ENSGT00390000008069 ENSGT00940000155443 ENSGT01090000260040.b.b.b.a.n ##37 ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 Spotted gar MODERN SPECIES 647 olfcb1 (ENSLOCG00000016796) ENSLOCG00000016797 ENSLOCG00000016799 ENSLOCG00000016801 zgc:112001 (ENSLOCG00000018007) ENSLOCG00000016802 LRFN2 (ENSLOCG00000016804) ENSLOCG00000016805 sox11a (ENSLOCG00000018008) CMPK2 (ENSLOCG00000016807) rsad2 (ENSLOCG00000016810) rnf144aa (ENSLOCG00000016812) id2a (ENSLOCG00000016814) kidins220b (ENSLOCG00000016815) mboat2b (ENSLOCG00000016816) e2f6 (ENSLOCG00000016817) #22 asap2a (ENSLOCG00000016818) itgb1bp1 (ENSLOCG00000016822) cpsf3 (ENSLOCG00000016823) iah1 (ENSLOCG00000016826) adam17a (ENSLOCG00000016828) ywhaqa (ENSLOCG00000016833) ##37 taf1b (ENSLOCG00000016834) #36 grhl1 (ENSLOCG00000016835) #35 klf11a (ENSLOCG00000016837) #33 rrm2 (ENSLOCG00000016838) #32 LGALS8 (ENSLOCG00000016840) zdhhc14 (ENSLOCG00000016842) tmem242 (ENSLOCG00000016844) arid1b (ENSLOCG00000016845) ENSLOCG00000016847 Osteoglossocephalai ANCESTRAL SPECIES 274 ENSGT00940000153592.A.b ENSGT00390000005606 ENSGT00940000157913.b.a ENSGT01010000222313.A.a ENSGT00940000153798.A.a ENSGT00940000161983.a ENSGT01030000234667.b.f.a ENSGT00390000007441 ENSGT00940000155671.y.b ENSGT00390000003466 ENSGT00390000014122 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 Osteoglossiformes ANCESTRAL SPECIES 11 ENSGT00390000012242 ENSGT00940000153511.b.q ENSGT00950000182856.a.b.a ENSGT01010000222287.B.b.a.b.b.b ENSGT00530000063503.a.b.g.b ENSGT00940000156078.c ENSGT00940000159468 ENSGT00940000164359.b ENSGT00940000161652.b.b ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464.r ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000155699 ENSGT01090000260040.b.b.b.a.n ##37 ENSGT00440000033827 #36 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000155727.o.a ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT00530000063946.b.f ENSGT00940000163429.A ENSGT00940000163429.D.fc ENSGT00950000183024.a.a.b.r Asian bonytongue MODERN SPECIES DLGAP2 (ENSSFOG00015003045) KBTBD11 (ENSSFOG00015003031) ccr6a (ENSSFOG00015003027) cep43 (ENSSFOG00015002963) zgc:113142 (ENSSFOG00015002820) myt1la (ENSSFOG00015002763) rnaseh1 (ENSSFOG00015002709) rps7 (ENSSFOG00015032644) allc (ENSSFOG00015002644) sox11b (ENSSFOG00015002596) ENSSFOG00015002564 ID2 (ENSSFOG00015002554) kidins220b (ENSSFOG00015002438) kidins220b (ENSSFOG00015024902) mboat2b (ENSSFOG00015002370) e2f6 (ENSSFOG00015002345) #22 ASAP2 (ENSSFOG00015002216) cpsf3 (ENSSFOG00015002108) ENSSFOG00015027678 ##37 taf1b (ENSSFOG00015002036) #36 ENSSFOG00015001947 rrm2 (ENSSFOG00015001895) #32 LGALS8 (ENSSFOG00015001836) zdhhc14 (ENSSFOG00015001736) TMEM242 (ENSSFOG00015033036) arid1b (ENSSFOG00015001640) CLDN20 (ENSSFOG00015001626) TIAM2 (ENSSFOG00015001613) ENSSFOG00015001607 ENSSFOG00015001543 PRKD3 (ENSSFOG00015001426) P. kingsleyae MODERN SPECIES 209 DLGAP2 (ENSPKIG00000003576) KBTBD11 (ENSPKIG00000003531) ccr6a (ENSPKIG00000003522) cep43 (ENSPKIG00000003393) myt1la (ENSPKIG00000003245) rnaseh1 (ENSPKIG00000003146) rps7 (ENSPKIG00000003098) allc (ENSPKIG00000003010) sox11b (ENSPKIG00000002960) ENSPKIG00000002921 ENSPKIG00000002904 ID2 (ENSPKIG00000002890) kidins220b (ENSPKIG00000002619) mboat2b (ENSPKIG00000002445) ENSPKIG00000002405 e2f6 (ENSPKIG00000002387) #22 ENSPKIG00000002380 ASAP2 (ENSPKIG00000002286) ENSPKIG00000002214 Clupeocephala ANCESTRAL SPECIES 1 ENSGT00940000153511.b.q ENSGT00950000182856.a.b.a ENSGT00530000063775.a.a ENSGT00530000063503.a.b.g.a ENSGT00940000156078.c ENSGT00940000155724.q ENSGT00940000159468 ENSGT00940000164359.b ENSGT00940000161652.b.b ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464 ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000156714.a ENSGT01030000234564.a.a.a.a.b.a ENSGT00940000155623 ENSGT00940000155699.a.a ENSGT00940000155443.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 ENSGT00940000157612 #35 ENSGT00940000155982.e.a #33 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b Otomorpha ANCESTRAL SPECIES 77 ENSGT00940000163429.A ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000155623 ENSGT01030000234564.a.a.a.a.b.a ENSGT00940000156714.a ENSGT00940000156464 ENSGT00940000157701 ENSGT00390000013670 ENSGT00940000154030.a.b ENSGT00940000161652.b.b ENSGT00940000164359.b ENSGT00940000159468 ENSGT01010000222287.B.b.a.b.b.b ENSGT00530000063503.a.b.g.b ENSGT00940000156078.c ENSGT00940000155724.q ENSGT00950000182856.a.b.a Otophysi ANCESTRAL SPECIES 54 ENSGT00390000017490.f ENSGT00940000158450.d.b ENSGT00390000003299 ENSGT00940000155507.a.b ENSGT00940000154289.A.a.b ENSGT00940000154209.a.a.h.d ENSGT00390000009816 ENSGT00940000155312.a.b ENSGT00940000156048.e.a.b.b.a ENSGT00390000013305.a.a #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000155734 #22 ENSGT00940000155623 ENSGT01030000234564.a.a.a.a.b.a ENSGT00940000156714.a ENSGT00940000156464 ENSGT00940000157701 ENSGT00390000013670 ENSGT00940000154030.a.b ENSGT00940000161652.b.b ENSGT00940000164359.b ENSGT00940000159468 ENSGT01010000222287.B.b.a.b.b.b ENSGT00530000063503.a.b.g.b ENSGT00940000156078.c ENSGT00940000155724.q ENSGT00490000043329.a.b.g.a Characiphysae ANCESTRAL SPECIES 113 ENSGT01030000234667.b.f.a ENSGT00390000007441 ENSGT00940000155671.y.b ENSGT00390000003466 ENSGT00390000014122 ENSGT00390000001793 ENSGT00940000157701.a ENSGT00940000156464 ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000155699.a.a ENSGT00940000155443.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000156048.e.a.b.b.a ENSGT00940000155312.a.b ENSGT00390000009816 ENSGT00940000154209.a.a.h.d ENSGT00940000154289.A.a.b ENSGT00940000155507.a.b ENSGT00390000003299 ENSGT00940000158450.d.b ENSGT00390000017490.f Characiphysae_b ANCESTRAL SPECIES 13 ENSGT00390000013931 ENSGT01030000234626.B ENSGT00940000162166 ENSGT00940000160412.a ENSGT01030000234667.b.f.a ENSGT00390000007441 ENSGT00940000155671.y.b ENSGT00390000003466 ENSGT00390000014122 ENSGT00390000001793 ENSGT00940000161652.b.b ENSGT00940000157701.b ENSGT00940000156464 ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000155699.a.a ENSGT00940000155443.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000156048.e.a.b.b.a ENSGT00940000155312.a.b ENSGT00390000009816 ENSGT00940000154209.a.a.h.d ENSGT00940000154289.A.a.b ENSGT00940000155507.a.b ENSGT00390000003299 ENSGT00940000158450.d.b ENSGT00390000017490.f Characoidei ANCESTRAL SPECIES 118 ENSGT01030000234667.b.f.a ENSGT00390000007441 ENSGT00940000155671.y.b ENSGT00390000003466 ENSGT00390000014122 ENSGT00390000001793 ENSGT00940000161652.b.b ENSGT00940000157701.b ENSGT00940000156464 ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000155699.a.a ENSGT00940000155443.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000156048.e.a.b.b.a ENSGT00940000155312.a.b ENSGT00390000009816 ENSGT00940000154209.a.a.h.d ENSGT00940000154289.A.a.b ENSGT00940000155507.a.b ENSGT00390000003299 ENSGT00940000158450.d.b ENSGT00390000017490.f Red-bellied piranha MODERN SPECIES 11 KIF25 (ENSPNAG00000021740) hebp2 (ENSPNAG00000021771) NHSL1 (ENSPNAG00000021901) acbd3 (ENSPNAG00000021929) ccr6a (ENSPNAG00000021944) cep43 (ENSPNAG00000003705) myt1la (ENSPNAG00000022305) rnaseh1 (ENSPNAG00000022344) rps7 (ENSPNAG00000022404) allc (ENSPNAG00000022422) sox11b (ENSPNAG00000022444) rnf144ab (ENSPNAG00000022457) id2b (ENSPNAG00000022467) kidins220b (ENSPNAG00000022762) mboat2b (ENSPNAG00000022858) e2f6 (ENSPNAG00000022887) #22 ASAP2 (ENSPNAG00000022972) cpsf3 (ENSPNAG00000023060) ADAM17 (ENSPNAG00000023254) ywhaqa (ENSPNAG00000023304) ##37 taf1b (ENSPNAG00000023321) #36 klf11a (ENSPNAG00000023362) #33 rrm2 (ENSPNAG00000023397) #32 actc1a (ENSPNAG00000023407) ENSPNAG00000023421 SCG5 (ENSPNAG00000023468) GREM1 (ENSPNAG00000023485) ENSPNAG00000023517 RYR3 (ENSPNAG00000023840) aven (ENSPNAG00000023925) chrm5b (ENSPNAG00000023948) Mexicana tetra MODERN SPECIES 18 acbd3 (ENSAMXG00000002091) ENSAMXG00000043932 ccr6a (ENSAMXG00000041469) cep43 (ENSAMXG00000002000) myt1la (ENSAMXG00000001873) ENSAMXG00000039837 rnaseh1 (ENSAMXG00000042940) rps7 (ENSAMXG00000041019) allc (ENSAMXG00000039561) sox11b (ENSAMXG00000001703) rnf144ab (ENSAMXG00000042340) ENSAMXG00000041355 id2b (ENSAMXG00000004758) kidins220b (ENSAMXG00000004760) mboat2b (ENSAMXG00000004764) e2f6 (ENSAMXG00000004766) #22 ENSAMXG00000004772 cpsf3 (ENSAMXG00000004786) ENSAMXG00000043808 ADAM17 (ENSAMXG00000004790) ywhaqa (ENSAMXG00000034065) ##37 taf1b (ENSAMXG00000004793) #36 klf11a (ENSAMXG00000036736) #33 rrm2 (ENSAMXG00000002688) #32 ENSAMXG00000029756 actc1a (ENSAMXG00000004797) ENSAMXG00000036014 SCG5 (ENSAMXG00000004801) GREM1 (ENSAMXG00000041784) ENSAMXG00000004809 RYR3 (ENSAMXG00000004818) Electric eel MODERN SPECIES 32 ENSEEEG00000009686 hebp2 (ENSEEEG00000009687) NHSL1 (ENSEEEG00000009690) acbd3 (ENSEEEG00000009692) KBTBD11 (ENSEEEG00000009724) ccr6a (ENSEEEG00000009725) cep43 (ENSEEEG00000009727) rnaseh1 (ENSEEEG00000009735) rps7 (ENSEEEG00000009739) allc (ENSEEEG00000009756) sox11b (ENSEEEG00000009766) rnf144ab (ENSEEEG00000009767) id2b (ENSEEEG00000009787) kidins220b (ENSEEEG00000009802) mboat2b (ENSEEEG00000009813) e2f6 (ENSEEEG00000009819) #22 ENSEEEG00000009834 cpsf3 (ENSEEEG00000010171) ADAM17 (ENSEEEG00000010193) ywhaqa (ENSEEEG00000010207) ##37 taf1b (ENSEEEG00000010218) #36 klf11a (ENSEEEG00000010223) #33 rrm2 (ENSEEEG00000010228) #32 actc1a (ENSEEEG00000010295) SCG5 (ENSEEEG00000010408) GREM1 (ENSEEEG00000010409) ENSEEEG00000010410 RYR3 (ENSEEEG00000010414) aven (ENSEEEG00000010420) chrm5b (ENSEEEG00000010422) emc7b (ENSEEEG00000010424) Channel catfish MODERN SPECIES 17 kif25 (ENSIPUG00000022979) hebp2 (ENSIPUG00000022989) nhsl1 (ENSIPUG00000022998) acbd3 (ENSIPUG00000023014) ccr6a (ENSIPUG00000023019) fgfr1op (ENSIPUG00000023022) myt1la (ENSIPUG00000023048) rnaseh1 (ENSIPUG00000023060) rps7 (ENSIPUG00000023071) allc (ENSIPUG00000023088) sox11b (ENSIPUG00000023096) ENSIPUG00000023404 id2b (ENSIPUG00000023411) kidins220b (ENSIPUG00000023417) mboat2b (ENSIPUG00000023454) e2f6 (ENSIPUG00000023463) #22 ASAP2 (ENSIPUG00000023474) cpsf3 (ENSIPUG00000023488) ADAM17 (ENSIPUG00000023507) ywhaq (ENSIPUG00000023526) ##37 taf1b (ENSIPUG00000023529) #36 klf11 (ENSIPUG00000023533) #33 rrm2 (ENSIPUG00000023535) #32 actc1a (ENSIPUG00000023541) SCG5 (ENSIPUG00000023546) grem1 (ENSIPUG00000023550) fmn1 (ENSIPUG00000023553) ryr3 (ENSIPUG00000023575) aven (ENSIPUG00000023666) chrm5b (ENSIPUG00000023668) emc7 (ENSIPUG00000023669) Cyprinoidei ANCESTRAL SPECIES 44 ENSGT00940000153739.a.b.t ENSGT00520000055578.a.b ENSGT00940000153897.b.a.b ENSGT00940000155459.x.b ENSGT01030000234527.A.a.a.b.a ENSGT00490000043329.a.b.g.a ENSGT00940000155724.q ENSGT00940000156078.c ENSGT00530000063503.a.b.g.b ENSGT01010000222287.B.b.a.b.b.b ENSGT00940000159468 ENSGT00940000164359.b ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000155734 #22 ENSGT00940000167539 ENSGT00940000155699.a.a ENSGT00940000155443.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000156048.e.a.b.b.a ENSGT00390000009816 ENSGT00940000154209.a.a.h.d ENSGT00940000154289.A.a.b ENSGT00940000155507.a.b ENSGT00390000003299 ENSGT00940000158450.d.b ENSGT00390000017490.f Zebrafish MODERN SPECIES 12 KIF25 (ENSDARG00000017532) hebp2 (ENSDARG00000042630) NHSL1 (ENSDARG00000042627) acbd3 (ENSDARG00000042623) ccr6a (ENSDARG00000087474) cep43 (ENSDARG00000003058) myt1la (ENSDARG00000008209) rnaseh1 (ENSDARG00000042571) rps7 (ENSDARG00000042566) allc (ENSDARG00000042562) sox11b (ENSDARG00000095743) rnf144ab (ENSDARG00000042557) id2b (ENSDARG00000029544) kidins220b (ENSDARG00000017338) mboat2b (ENSDARG00000042551) e2f6 (ENSDARG00000008119) #22 asap2b (ENSDARG00000019564) cpsf3 (ENSDARG00000027649) ADAM17 (ENSDARG00000093093) ywhaqa (ENSDARG00000042539) ##37 ENSDARG00000112254 taf1b (ENSDARG00000028937) #36 klf11a (ENSDARG00000030844) #33 rrm2 (ENSDARG00000020711) #32 actc1a (ENSDARG00000042535) SCG5 (ENSDARG00000032126) grem1a (ENSDARG00000029546) FMN1 (ENSDARG00000011975) RYR3 (ENSDARG00000071331) aven (ENSDARG00000002894) chrm5b (ENSDARG00000069598) Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 154 ENSGT00940000156464.eb.a.b ENSGT00940000156714.b.b ENSGT01030000234564.a.a.a.a.b.b.f ENSGT00940000155734.gb.b #22 ENSGT00940000167539.a ENSGT00940000155699.a.a.c ENSGT00940000155443.d.c ENSGT00940000155734.gb.a #22 ENSGT00940000167539.b ENSGT00940000155699.a.a.d ENSGT00940000155443.d.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 ENSGT00940000155982.e.b.a #33 ENSGT00390000013305.a.a.n #32 ENSGT00940000156048.e.a.b.b.a.a ENSGT00390000009816.c.b ENSGT00940000154209.a.a.h.d.b ENSGT00940000154289.A.b ENSGT00940000155507.a.b.b ENSGT00390000003299.b ENSGT00940000158450.d.b.b ENSGT00390000017490.f.d Goldfish DUPLICATION Goldfish MODERN SPECIES 39 ppfia1 (ENSCARG00000050096) emilin1a (ENSCARG00000049857) snap25a (ENSCARG00000049820) cnstb (ENSCARG00000049812) ENSCARG00000049799 hnrnpub (ENSCARG00000049625) lft1 (ENSCARG00000049599) cdc42bpab (ENSCARG00000034083) ##23 slc5a6a (ENSCARG00000033370) rpl7l1 (ENSCARG00000033274) NCOA1 (ENSCARG00000033214) slc25a27 (ENSCARG00000033128) ENSCARG00000033118 heca (ENSCARG00000033106) ENSCARG00000033098 e2f6 (ENSCARG00000033078) #22 asap2b (ENSCARG00000031807) cpsf3 (ENSCARG00000031673) ENSCARG00000031235 ywhaqa (ENSCARG00000031208) ##37 lft1 (ENSCARG00000031196) cdc42bpab (ENSCARG00000029283) ##23 fzd3a (ENSCARG00000029219) fbxo16 (ENSCARG00000029185) fam49a (ENSCARG00000029119) #14 vsnl1a (ENSCARG00000029106) #12 sf3b6 (ENSCARG00000029100) tdrd6 (ENSCARG00000029078) pla2g7 (ENSCARG00000029062) mep1a.1 (ENSCARG00000028839) mep1a.2 (ENSCARG00000028797) Goldfish MODERN SPECIES 39 rps7 (ENSCARG00000025561) rnaseh1 (ENSCARG00000025518) myt1la (ENSCARG00000023430) cep43 (ENSCARG00000023220) ccr6a (ENSCARG00000023204) acbd3 (ENSCARG00000023157) NHSL1 (ENSCARG00000023097) hebp2 (ENSCARG00000023065) acat2 (ENSCARG00000023014) wtap (ENSCARG00000023002) sod2 (ENSCARG00000022970) FNDC1 (ENSCARG00000022921) id2b (ENSCARG00000022907) kidins220b (ENSCARG00000022840) mboat2b (ENSCARG00000022572) e2f6 (ENSCARG00000048277) #22 asap2b (ENSCARG00000047812) cpsf3 (ENSCARG00000047449) ENSCARG00000047379 cited2 (ENSCARG00000047369) map3k7 (ENSCARG00000044760) BACH2 (ENSCARG00000044654) GJA10 (ENSCARG00000044641) casp8ap2 (ENSCARG00000044635) katna1 (ENSCARG00000044615) ginm1 (ENSCARG00000044603) ENSCARG00000044583 sh3rf1 (ENSCARG00000044539) ENSCARG00000044531 PALLD (ENSCARG00000044472) Cyprininae_a ANCESTRAL SPECIES 86 ENSGT00940000162166.g.b ENSGT00940000160412.a.b ENSGT00950000182963.a.a.k.a ENSGT00530000063651.a.o.a ENSGT01030000234667.b.f.a.d ENSGT00390000007441.e ENSGT00940000155671.y.b.b ENSGT00390000003466.m ENSGT00390000014122.g ENSGT00390000001793.d ENSGT00940000161652.b.b.b.b.a ENSGT00940000157701.f.a.b ENSGT00940000156464.eb.a.a ENSGT00940000156714.b.a ENSGT01030000234564.a.a.a.a.b.b.e ENSGT00940000155734.gb.a #22 ENSGT00940000155734.hb #22 ENSGT00940000167539.b ENSGT00940000155699.a.a.d ENSGT00940000155443.d.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00940000155982.e.b.b #33 ENSGT00390000013305.a.a.m #32 ENSGT00940000156048.e.a.b.b.a.b ENSGT00390000009816.c.a ENSGT00940000154209.a.a.h.d.a ENSGT00940000154289.A.a.b.h ENSGT00940000155507.a.b.a ENSGT00390000003299.a ENSGT00940000158450.d.b.a ENSGT00390000017490.f.c Common carp reference MODERN SPECIES 28 acat2 (ENSCCRG00000076853) ENSCCRG00000064494 ENSCCRG00000054161 acbd3 (ENSCCRG00000036992) ccr6a (ENSCCRG00000053257) cep43 (ENSCCRG00000074485) myt1la (ENSCCRG00000064746) rnaseh1 (ENSCCRG00000014420) rps7 (ENSCCRG00000014352) allc (ENSCCRG00000012846) sox11b (ENSCCRG00000064255) rnf144ab (ENSCCRG00000036211) id2b (ENSCCRG00000058010) kidins220b (ENSCCRG00000050017) mboat2b (ENSCCRG00000049813) e2f6 (ENSCCRG00000049786) #22 ENSCCRG00000049779 asap2b (ENSCCRG00000046382) cpsf3 (ENSCCRG00000050211) ADAM17 (ENSCCRG00000050317) ywhaqa (ENSCCRG00000002833) ##37 klf11a (ENSCCRG00000050719) #33 ENSCCRG00000058391 #32 ENSCCRG00000031062 SCG5 (ENSCCRG00000033404) GREM1 (ENSCCRG00000057753) FMN1 (ENSCCRG00000078430) RYR3 (ENSCCRG00000031160) aven (ENSCCRG00000033465) chrm5b (ENSCCRG00000014640) katnbl1 (ENSCCRG00000033432) Golden-line barbel MODERN SPECIES 5127 e2f6 (ENSSGRG00000004087) #22 Cyprininae ANCESTRAL SPECIES 154 ENSGT00940000156464.eb.a.b ENSGT00940000156714.b.b ENSGT01030000234564.a.a.a.a.b.b.f ENSGT00940000155734.gb.b #22 ENSGT00940000167539.a ENSGT00940000155699.a.a.c ENSGT00940000155443.d.c ENSGT00940000155734.gb.a #22 ENSGT00940000167539.b ENSGT00940000155699.a.a.d ENSGT00940000155443.d.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00440000033827 #36 ENSGT00940000155982.e.b.a #33 ENSGT00390000013305.a.a.n #32 ENSGT00940000156048.e.a.b.b.a.a ENSGT00390000009816.c.b ENSGT00940000154209.a.a.h.d.b ENSGT00940000154289.A.b Cyprininae_a ANCESTRAL SPECIES 127 ENSGT00940000162166.g.a ENSGT00940000162166.h ENSGT00940000160412.a.a ENSGT00950000182963.a.a.k.b ENSGT00530000063651.a.o.b ENSGT01030000234667.b.f.a.c ENSGT00390000007441.f ENSGT00940000155671.y.b.a ENSGT00390000003466.n ENSGT00390000001793.c ENSGT00940000161652.b.b.b.b.b ENSGT00940000157701.f.a.a ENSGT00940000156464.eb.a.b ENSGT00940000156714.b.b ENSGT01030000234564.a.a.a.a.b.b.f ENSGT00940000155734.gb.b #22 ENSGT00940000167539.a ENSGT00940000155699.a.a.c ENSGT00940000155443.d.c ENSGT00440000033827 #36 ENSGT00940000155982.e.b.a #33 ENSGT00390000013305.a.a.n #32 ENSGT00940000156048.e.a.b.b.a.a ENSGT00390000009816.c.b ENSGT00940000154209.a.a.h.d.b ENSGT00940000154289.A.a.b.g ENSGT00940000155507.a.b.b ENSGT00390000003299.b ENSGT00940000158450.d.b.b ENSGT00390000017490.f.d ENSGT00390000012351.bb.a Golden-line barbel MODERN SPECIES 361 KIF25 (ENSSGRG00000029034) hebp2 (ENSSGRG00000029033) NHSL1 (ENSSGRG00000029030) acbd3 (ENSSGRG00000029022) ccr6a (ENSSGRG00000029020) cep43 (ENSSGRG00000029019) myt1la (ENSSGRG00000028996) rnaseh1 (ENSSGRG00000028989) rps7 (ENSSGRG00000028981) allc (ENSSGRG00000028980) sox11b (ENSSGRG00000028979) rnf144ab (ENSSGRG00000028975) id2b (ENSSGRG00000028973) kidins220b (ENSSGRG00000028621) mboat2b (ENSSGRG00000028611) e2f6 (ENSSGRG00000028609) #22 ENSSGRG00000028608 ENSSGRG00000028605 cpsf3 (ENSSGRG00000028258) ADAM17 (ENSSGRG00000028037) klf11a (ENSSGRG00000027887) #33 ENSSGRG00000027881 SCG5 (ENSSGRG00000027876) GREM1 (ENSSGRG00000027874) FMN1 (ENSSGRG00000027873) aven (ENSSGRG00000027796) chrm5b (ENSSGRG00000027789) emc7b (ENSSGRG00000027788) katnbl1 (ENSSGRG00000027787) THBS1 (ENSSGRG00000027725) gpr176 (ENSSGRG00000027720) Common carp reference MODERN SPECIES 34 ENSCCRG00000036974 ENSCCRG00000079447 acbd3 (ENSCCRG00000030468) ccr6a (ENSCCRG00000079596) cep43 (ENSCCRG00000004734) myt1la (ENSCCRG00000004110) rnaseh1 (ENSCCRG00000012828) ENSCCRG00000061716 rps7 (ENSCCRG00000012830) ENSCCRG00000070367 sox11b (ENSCCRG00000054079) rnf144ab (ENSCCRG00000075326) id2b (ENSCCRG00000061529) kidins220b (ENSCCRG00000050138) mboat2b (ENSCCRG00000049975) e2f6 (ENSCCRG00000049247) #22 asap2b (ENSCCRG00000049372) cpsf3 (ENSCCRG00000062315) ADAM17 (ENSCCRG00000050647) taf1b (ENSCCRG00000031078) #36 klf11a (ENSCCRG00000031075) #33 RRM2 (ENSCCRG00000067501) #32 ENSCCRG00000005442 GREM1 (ENSCCRG00000051130) FMN1 (ENSCCRG00000067336) RYR3 (ENSCCRG00000033603) aven (ENSCCRG00000062528) chrm5b (ENSCCRG00000033453) emc7b (ENSCCRG00000033447) katnbl1 (ENSCCRG00000014656) ENSCCRG00000028734 Goldfish DUPLICATION Goldfish MODERN SPECIES 12 si:ch211-63o20.7 (ENSCARG00000005660) elp3 (ENSCARG00000005669) slc25a24 (ENSCARG00000005688) ENSCARG00000005722 ENSCARG00000005760 prrx1b (ENSCARG00000005769) gorab (ENSCARG00000005799) ntmt2 (ENSCARG00000005808) allc (ENSCARG00000005816) rps7 (ENSCARG00000005846) rnaseh1 (ENSCARG00000005871) lratd1 (ENSCARG00000005899) #18 id2b (ENSCARG00000005906) kidins220b (ENSCARG00000005927) mboat2b (ENSCARG00000006068) e2f6 (ENSCARG00000007357) #22 asap2b (ENSCARG00000007402) cpsf3 (ENSCARG00000007650) ADAM17 (ENSCARG00000007700) ywhaqa (ENSCARG00000007885) ##37 taf1b (ENSCARG00000007909) #36 klf11a (ENSCARG00000007922) #33 RRM2 (ENSCARG00000007961) #32 ACTA1 (ENSCARG00000009564) SCG5 (ENSCARG00000009571) GREM1 (ENSCARG00000009576) ENSCARG00000009577 ENSCARG00000011008 chrm5b (ENSCARG00000011013) emc7b (ENSCARG00000011019) katnbl1 (ENSCARG00000011042) Goldfish MODERN SPECIES 1255 ENSCARG00000042911 e2f6 (ENSCARG00000042949) #22 Cyprininae ANCESTRAL SPECIES 420 ENSGT00940000162166.g.b ENSGT00940000160412.a.b ENSGT00950000182963.a.a.k.a ENSGT00530000063651.a.o.a ENSGT01030000234667.b.f.a.d ENSGT00390000007441.e ENSGT00940000155671.y.b.b ENSGT00390000003466.m ENSGT00390000014122.g ENSGT00390000001793.d ENSGT00940000161652.b.b.b.b.a ENSGT00940000157701.f.a.b ENSGT00940000156464.eb.a.a ENSGT00940000156714.b.a ENSGT01030000234564.a.a.a.a.b.b.e ENSGT00940000155734.hb #22 Cyprininae_a ANCESTRAL SPECIES 86 ENSGT00940000160412.a.b ENSGT00950000182963.a.a.k.a ENSGT00530000063651.a.o.a ENSGT01030000234667.b.f.a.d ENSGT00390000007441.e ENSGT00940000155671.y.b.b ENSGT00390000003466.m ENSGT00390000014122.g ENSGT00390000001793.d ENSGT00940000161652.b.b.b.b.a ENSGT00940000157701.f.a.b ENSGT00940000156464.eb.a.a ENSGT00940000156714.b.a ENSGT01030000234564.a.a.a.a.b.b.e ENSGT00940000155734.gb.a #22 ENSGT00940000155734.hb #22 ENSGT00940000167539.b ENSGT00940000155699.a.a.d ENSGT00940000155443.d.d ENSGT01090000260040.b.b.b.a.m.b ##37 ENSGT00940000155982.e.b.b #33 ENSGT00390000013305.a.a.m #32 ENSGT00940000156048.e.a.b.b.a.b ENSGT00390000009816.c.a ENSGT00940000154209.a.a.h.d.a ENSGT00940000154289.A.a.b.h ENSGT00940000155507.a.b.a ENSGT00390000003299.a ENSGT00940000158450.d.b.a ENSGT00390000017490.f.c ENSGT00390000012351.bb.b Golden-line barbel MODERN SPECIES 14 sod2 (ENSSGRG00000040469) wtap (ENSSGRG00000040595) acat2 (ENSSGRG00000040620) hebp2 (ENSSGRG00000040677) NHSL1 (ENSSGRG00000040679) acbd3 (ENSSGRG00000040680) cep43 (ENSSGRG00000040684) myt1la (ENSSGRG00000040685) rnaseh1 (ENSSGRG00000040687) allc (ENSSGRG00000040688) sox11b (ENSSGRG00000040812) rnf144ab (ENSSGRG00000040813) id2b (ENSSGRG00000040814) kidins220b (ENSSGRG00000040828) mboat2b (ENSSGRG00000041592) ENSSGRG00000041611 #22 asap2b (ENSSGRG00000041638) ENSSGRG00000042339 cpsf3 (ENSSGRG00000042343) ADAM17 (ENSSGRG00000042815) ywhaqa (ENSSGRG00000043677) ##37 ENSSGRG00000043678 ENSSGRG00000043681 SCG5 (ENSSGRG00000044040) GREM1 (ENSSGRG00000044042) RYR3 (ENSSGRG00000044248) aven (ENSSGRG00000049247) chrm5b (ENSSGRG00000049248) emc7b (ENSSGRG00000049250) katnbl1 (ENSSGRG00000049252) THBS1 (ENSSGRG00000049262) Clupeiformes ANCESTRAL SPECIES 830 ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 Atlantic herring MODERN SPECIES 6 fzd3a (ENSCHAG00000026363) cdc42bpab (ENSCHAG00000026335) ##23 lft1 (ENSCHAG00000026327) hnrnpub (ENSCHAG00000026311) ENSCHAG00000026300 cnstb (ENSCHAG00000026297) sccpdhb (ENSCHAG00000026292) SNAP25 (ENSCHAG00000026280) ankef1a (ENSCHAG00000026273) emilin1a (ENSCHAG00000026270) stmn4 (ENSCHAG00000026263) ENSCHAG00000026259 mcm3 (ENSCHAG00000026249) GPX1 (ENSCHAG00000026244) mboat2b (ENSCHAG00000026224) e2f6 (ENSCHAG00000026214) #22 ENSCHAG00000023959 slc35f6 (ENSCHAG00000023842) kcnk3a (ENSCHAG00000023836) enpp1 (ENSCHAG00000021672) SYTL3 (ENSCHAG00000021579) ezrb (ENSCHAG00000021133) rsph3 (ENSCHAG00000021105) ENSCHAG00000021100 tagapb (ENSCHAG00000021089) opn8c (ENSCHAG00000021073) PPP2R5A (ENSCHAG00000020626) dtl (ENSCHAG00000020537) ints7 (ENSCHAG00000020434) lpgat1 (ENSCHAG00000020413) nek2 (ENSCHAG00000020396) Denticle herring DUPLICATION Denticle herring DUPLICATION Denticle herring MODERN SPECIES 5 SYTL3 (ENSDCDG00000031756) ENSDCDG00000031776 ENSDCDG00000031932 kcnk3a (ENSDCDG00000031934) slc35f6 (ENSDCDG00000031936) mboat2b (ENSDCDG00000031943) ENSDCDG00000031950 #22 ENSDCDG00000031952 #22 ENSDCDG00000031954 ENSDCDG00000031956 ENSDCDG00000031957 kcnk3a (ENSDCDG00000031959) ENSDCDG00000031961 mboat2b (ENSDCDG00000031966) ENSDCDG00000031969 #22 ENSDCDG00000031970 #22 ASAP2 (ENSDCDG00000031979) mcm3 (ENSDCDG00000032043) ENSDCDG00000032529 ENSDCDG00000032533 ENSDCDG00000032536 ENSDCDG00000003276 ENSDCDG00000003416 Denticle herring MODERN SPECIES 5 ezrb (ENSDCDG00000025652) SYTL3 (ENSDCDG00000027078) enpp1 (ENSDCDG00000027124) ENSDCDG00000030001 ENSDCDG00000030007 enpp1 (ENSDCDG00000030058) ENSDCDG00000031749 ENSDCDG00000031750 SYTL3 (ENSDCDG00000031756) ENSDCDG00000031776 ENSDCDG00000031932 kcnk3a (ENSDCDG00000031934) slc35f6 (ENSDCDG00000031936) mboat2b (ENSDCDG00000031943) ENSDCDG00000031950 #22 ENSDCDG00000031952 #22 ENSDCDG00000031954 ENSDCDG00000031956 ENSDCDG00000031957 kcnk3a (ENSDCDG00000031959) ENSDCDG00000031961 mboat2b (ENSDCDG00000031966) ENSDCDG00000031969 #22 ENSDCDG00000031970 #22 ASAP2 (ENSDCDG00000031979) mcm3 (ENSDCDG00000032043) ENSDCDG00000032529 ENSDCDG00000032533 ENSDCDG00000032536 ENSDCDG00000003276 ENSDCDG00000003416 Denticle herring DUPLICATION Denticle herring MODERN SPECIES 5 ENSDCDG00000031750 SYTL3 (ENSDCDG00000031756) ENSDCDG00000031776 ENSDCDG00000031932 kcnk3a (ENSDCDG00000031934) slc35f6 (ENSDCDG00000031936) mboat2b (ENSDCDG00000031943) ENSDCDG00000031950 #22 ENSDCDG00000031952 #22 ENSDCDG00000031954 ENSDCDG00000031956 ENSDCDG00000031957 kcnk3a (ENSDCDG00000031959) ENSDCDG00000031961 mboat2b (ENSDCDG00000031966) ENSDCDG00000031969 #22 ENSDCDG00000031970 #22 ASAP2 (ENSDCDG00000031979) mcm3 (ENSDCDG00000032043) ENSDCDG00000032529 ENSDCDG00000032533 ENSDCDG00000032536 ENSDCDG00000003276 ENSDCDG00000003416 Denticle herring MODERN SPECIES 5 TAGAP (ENSDCDG00000025533) ezrb (ENSDCDG00000025652) SYTL3 (ENSDCDG00000027078) enpp1 (ENSDCDG00000027124) ENSDCDG00000030001 ENSDCDG00000030007 enpp1 (ENSDCDG00000030058) ENSDCDG00000031749 ENSDCDG00000031750 SYTL3 (ENSDCDG00000031756) ENSDCDG00000031776 ENSDCDG00000031932 kcnk3a (ENSDCDG00000031934) slc35f6 (ENSDCDG00000031936) mboat2b (ENSDCDG00000031943) ENSDCDG00000031950 #22 ENSDCDG00000031952 #22 ENSDCDG00000031954 ENSDCDG00000031956 ENSDCDG00000031957 kcnk3a (ENSDCDG00000031959) ENSDCDG00000031961 mboat2b (ENSDCDG00000031966) ENSDCDG00000031969 #22 ENSDCDG00000031970 #22 ASAP2 (ENSDCDG00000031979) mcm3 (ENSDCDG00000032043) ENSDCDG00000032529 ENSDCDG00000032533 ENSDCDG00000032536 ENSDCDG00000003276 Euteleosteomorpha ANCESTRAL SPECIES 52 ENSGT00950000182856.a.b.a ENSGT00530000063775.a.a ENSGT01010000222287.B.b.a.b.b.b ENSGT00530000063503.a.b.g.b ENSGT00940000156078.c ENSGT00940000155724.q ENSGT00940000159468 ENSGT00940000164359.b ENSGT00940000161652.b.b ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464 ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000156714.a ENSGT01030000234564.a.a.a.a.b.a ENSGT00940000155623 ENSGT00390000003990 ENSGT00940000155699.a.b ENSGT00390000008069 ENSGT00940000155443.c ENSGT01090000260040.b.b.b.a.m.a.a ##37 Protacanthopterygii ANCESTRAL SPECIES 72 ENSGT00530000063775.a.a.a ENSGT01010000222287.B.b.a.b.b.b ENSGT00530000063503.a.b.g.b ENSGT00940000156078.c ENSGT00940000155724.q ENSGT00940000159468 ENSGT00940000164359.b ENSGT00940000161652.b.b.p ENSGT00940000161652.b.b.o.b ENSGT00940000154030.a.b ENSGT00390000013670 ENSGT00940000157701 ENSGT00940000156464 ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000156714.a ENSGT01030000234564.a.a.a.a.b.a ENSGT00940000155623 ENSGT00390000003990 ENSGT00390000008069 ENSGT00940000155443.c ENSGT01090000260040.b.b.b.a.m.a.a ##37 ENSGT00940000157612 #35 ENSGT00940000155982.e.a #33 ENSGT00940000157136.a ENSGT00950000183149.C.a ENSGT00940000155500.e ENSGT00940000154928.c.a.a ENSGT00390000010056.a ENSGT00390000017953.B Salmoninae ANCESTRAL SPECIES 152 ENSGT00940000161652.b.b.p.b.b ENSGT00940000157701.k.b ENSGT00990000204094.c.a.a ENSGT00940000156464.mb.a.b ENSGT00940000156714.b.f ENSGT01030000234564.a.a.a.a.b.b.a.a ENSGT00940000155734 #22 ENSGT00940000155623.ib.b.a ENSGT00940000155699.a.a ENSGT00940000155443.d.i ENSGT01090000260040.b.b.b.a.m.a.b.a ##37 ENSGT00440000033827 #36 ENSGT00940000157612.b.a #35 ENSGT00940000155982.e.b.g #33 ENSGT00390000013305.a.a.d #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.w.a ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c Huchen MODERN SPECIES 50 ENSHHUG00000023149 ENSHHUG00000023161 id2b (ENSHHUG00000023162) kidins220b (ENSHHUG00000023174) MBOAT2 (ENSHHUG00000023374) e2f6 (ENSHHUG00000023398) #22 ASAP2 (ENSHHUG00000023420) cpsf3 (ENSHHUG00000023661) ADAM17 (ENSHHUG00000023751) ENSHHUG00000024054 ##37 taf1b (ENSHHUG00000024093) #36 GRHL1 (ENSHHUG00000024127) #35 klf11a (ENSHHUG00000024133) #33 RRM2 (ENSHHUG00000024152) #32 LGALS8 (ENSHHUG00000024294) zdhhc14 (ENSHHUG00000024302) tmem242 (ENSHHUG00000024309) arid1b (ENSHHUG00000024315) CLDN20 (ENSHHUG00000024324) TIAM2 (ENSHHUG00000024329) cnksr3 (ENSHHUG00000024360) Salmoninae_a ANCESTRAL SPECIES 23 ENSGT00940000161652.b.b.p.b.b ENSGT00940000157701.k.b ENSGT00990000204094.c.a.a ENSGT00940000156464.mb.a.b ENSGT00940000156714.b.f ENSGT01030000234564.a.a.a.a.b.b.a.a ENSGT00940000155734 #22 ENSGT00940000155623.ib.b.a ENSGT00940000155699.a.a ENSGT00940000155443.d.i ENSGT01090000260040.b.b.b.a.m.a.b.a ##37 ENSGT00440000033827 #36 ENSGT00940000157612.b.a #35 ENSGT00940000155982.e.b.g #33 ENSGT00390000013305.a.a.d #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b Oncorhynchus ANCESTRAL SPECIES 25 ENSGT00950000182767.a.h ENSGT00390000016465 ENSGT00400000022349.d ENSGT00390000013762.b.a.a.a.b ENSGT00940000159120.f.d ENSGT00940000157927.i ENSGT01020000230401.a.a.a.d ENSGT00940000163080.a.f ENSGT00550000074807.d.a.a.a.a ENSGT00940000161652.b.b.p.b.b ENSGT00940000157701.k.b ENSGT00990000204094.c.a.a ENSGT00940000156464.mb.a.b ENSGT00940000156714.b.f ENSGT01030000234564.a.a.a.a.b.b.a.a ENSGT00940000155734 #22 ENSGT00940000155623.ib.b.a ENSGT00940000155699.a.a ENSGT00940000155443.d.i ENSGT01090000260040.b.b.b.a.m.a.b.a ##37 ENSGT00440000033827 #36 ENSGT00940000157612.b.a #35 ENSGT00940000155982.e.b.g #33 ENSGT00390000013305.a.a.d #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b Rainbow trout MODERN SPECIES 25 AIDA (ENSOMYG00000002016) tmem151ba (ENSOMYG00000002067) nfkbie (ENSOMYG00000002086) slc35b2 (ENSOMYG00000002103) hsp90bb (ENSOMYG00000002804) ENSOMYG00000003396 ENSOMYG00000003459 sox11b (ENSOMYG00000003505) ENSOMYG00000057208 ENSOMYG00000067987 ENSOMYG00000064901 ENSOMYG00000003530 id2b (ENSOMYG00000003555) kidins220b (ENSOMYG00000003863) mboat2b (ENSOMYG00000003933) e2f6 (ENSOMYG00000003946) #22 ASAP2 (ENSOMYG00000004895) ENSOMYG00000053980 cpsf3 (ENSOMYG00000005764) ADAM17 (ENSOMYG00000007729) ywhaqa (ENSOMYG00000009438) ##37 ENSOMYG00000072499 ENSOMYG00000046721 taf1b (ENSOMYG00000077298) #36 GRHL1 (ENSOMYG00000009524) #35 klf11a (ENSOMYG00000009549) #33 RRM2 (ENSOMYG00000009693) #32 ENSOMYG00000010358 zdhhc14 (ENSOMYG00000010383) ENSOMYG00000070397 tmem242 (ENSOMYG00000010405) Oncorhynchus_a ANCESTRAL SPECIES 17 ENSGT00390000011405 ENSGT00950000182767.a.h ENSGT00390000016465 ENSGT00400000022349.d ENSGT00390000013762.b.a.a.a.b ENSGT00940000159120.f.d ENSGT00940000157927.i ENSGT01020000230401.a.a.a.d ENSGT00940000163080.a.f ENSGT00550000074807.d.a.a.a.a ENSGT00940000161652.b.b.p.b.b ENSGT00990000204094.c.a.a ENSGT00940000156464.mb.a.b ENSGT00940000156714.b.f ENSGT01030000234564.a.a.a.a.b.b.a.a ENSGT00940000155734 #22 ENSGT00940000155623.ib.b.a ENSGT00940000155699.a.a ENSGT00940000155443.d.i ENSGT01090000260040.b.b.b.a.m.a.b.a ##37 ENSGT00440000033827 #36 ENSGT00940000157612.b.a #35 ENSGT00940000155982.e.b.g #33 ENSGT00390000013305.a.a.d #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.x ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b Chinook salmon MODERN SPECIES 9 ENSOTSG00005044413 aida (ENSOTSG00005044414) rnf8 (ENSOTSG00005002084) tmem151ba (ENSOTSG00005002279) nfkbie (ENSOTSG00005002283) slc35b2 (ENSOTSG00005002289) hsp90ab1 (ENSOTSG00005002318) nfkbiaa (ENSOTSG00005003896) psma6b (ENSOTSG00005003898) sox11b (ENSOTSG00005003905) ENSOTSG00005003907 ENSOTSG00005003908 id2b (ENSOTSG00005003909) kidins220b (ENSOTSG00005003919) mboat2b (ENSOTSG00005003933) e2f6 (ENSOTSG00005003935) #22 ASAP2 (ENSOTSG00005003996) cpsf3 (ENSOTSG00005011109) ADAM17 (ENSOTSG00005012037) ENSOTSG00005015416 ##37 taf1b (ENSOTSG00005015417) #36 GRHL1 (ENSOTSG00005015418) #35 ENSOTSG00005015419 klf11a (ENSOTSG00005015420) #33 RRM2 (ENSOTSG00005015421) #32 LGALS8 (ENSOTSG00005016467) zdhhc14 (ENSOTSG00005016470) tmem242 (ENSOTSG00005016471) arid1b (ENSOTSG00005016477) ENSOTSG00005016480 CLDN20 (ENSOTSG00005016482) Coho salmon MODERN SPECIES 13 DUSP10 (ENSOKIG00005030931) taf1a (ENSOKIG00005030941) ENSOKIG00005030955 aida (ENSOKIG00005030994) rnf8 (ENSOKIG00005031006) tmem151ba (ENSOKIG00005031075) nfkbie (ENSOKIG00005031083) slc35b2 (ENSOKIG00005031109) hsp90ab1 (ENSOKIG00005031181) ENSOKIG00005032343 PSMA6 (ENSOKIG00005032399) sox11b (ENSOKIG00005032433) id2b (ENSOKIG00005032439) kidins220b (ENSOKIG00005032461) mboat2b (ENSOKIG00005032655) e2f6 (ENSOKIG00005032718) #22 ASAP2 (ENSOKIG00005032844) cpsf3 (ENSOKIG00005034078) ADAM17 (ENSOKIG00005034365) ENSOKIG00005036784 ##37 taf1b (ENSOKIG00005036800) #36 klf11a (ENSOKIG00005036821) #33 RRM2 (ENSOKIG00005036867) #32 LGALS8 (ENSOKIG00005037486) zdhhc14 (ENSOKIG00005037548) tmem242 (ENSOKIG00005037575) arid1b (ENSOKIG00005037606) CLDN20 (ENSOKIG00005037936) TIAM2 (ENSOKIG00005037962) ENSOKIG00005038262 ENSOKIG00005038496 Salmo DUPLICATION Salmo ANCESTRAL SPECIES 12 ENSGT00390000016478.e.a ENSGT00940000164834.b.f ENSGT01030000234517.H.a.f ##23 ENSGT00530000063867.a.a.db ENSGT00530000063867.a.b.m.b ENSGT00950000183136.a.b.f ENSGT00940000155144.n.t ENSGT00940000156671.l.b.a ENSGT00940000155490.a.c.a.c.b ENSGT00940000154045.b.d.a ENSGT00940000161652.b.b.p.b.b ENSGT00940000157701.k.b ENSGT00940000156464.mb.a.b ENSGT00940000156714.b.f ENSGT01030000234564.a.a.a.a.b.b.a.a ENSGT00940000155734.kb #22 ENSGT00940000155623.ib.b.a ENSGT00940000155699.a.a ENSGT00940000155443.d.i ENSGT01090000260040.b.b.b.a.m.a.b.a ##37 ENSGT00440000033827 #36 ENSGT00940000157612.b.a #35 ENSGT00940000155982.e.b.g #33 ENSGT00390000013305.a.a.d #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b.f ENSGT00390000008642.w.a ENSGT00940000155634.q.b.c ENSGT00940000161252.h.l ENSGT00940000157012.l.c ENSGT00940000163429.C.b Atlantic salmon MODERN SPECIES 25 eif5 (ENSSSAG00000015636) ENSSSAG00000094877 cdc42bpb (ENSSSAG00000022058) ##23 ENSSSAG00000067479 ENSSSAG00000087136 ENSSSAG00000120792 ENSSSAG00000067588 ENSSSAG00000072133 ENSSSAG00000072139 ENSSSAG00000121038 ENSSSAG00000088329 sox11b (ENSSSAG00000072143) ENSSSAG00000072144 kidins220b (ENSSSAG00000072151) mboat2b (ENSSSAG00000072254) e2f6 (ENSSSAG00000072278) #22 ASAP2 (ENSSSAG00000072347) cpsf3 (ENSSSAG00000073096) ADAM17 (ENSSSAG00000073233) ywhaqa (ENSSSAG00000075607) ##37 GRHL1 (ENSSSAG00000075614) #35 klf11a (ENSSSAG00000075644) #33 rrm2 (ENSSSAG00000083858) #32 lgals8a (ENSSSAG00000112692) zdhhc14 (ENSSSAG00000075847) arid1b (ENSSSAG00000075859) CLDN20 (ENSSSAG00000102040) TIAM2 (ENSSSAG00000075929) ENSSSAG00000075966 PRKD3 (ENSSSAG00000075988) ENSSSAG00000076174 River trout MODERN SPECIES si:dkeyp-72h1.1 (ENSSTUG00000038664) cdc42bpb (ENSSTUG00000037407) ##23 si:dkey-177p2.6 (ENSSTUG00000037358) cdca4 (ENSSTUG00000037357) ENSSTUG00000037355 ahsa1a (ENSSTUG00000037323) sel1l (ENSSTUG00000034678) ENSSTUG00000034582 nudt14 (ENSSTUG00000034575) sox11b (ENSSTUG00000034561) ENSSTUG00000034552 ENSSTUG00000034533 id2b (ENSSTUG00000034522) kidins220b (ENSSTUG00000034149) mboat2b (ENSSTUG00000034052) e2f6 (ENSSTUG00000034020) #22 ASAP2 (ENSSTUG00000031636) cpsf3 (ENSSTUG00000031295) ADAM17 (ENSSTUG00000028571) ENSSTUG00000028499 ##37 taf1b (ENSSTUG00000028460) #36 klf11a (ENSSTUG00000028441) #33 RRM2 (ENSSTUG00000027410) #32 LGALS8 (ENSSTUG00000027376) zdhhc14 (ENSSTUG00000027365) tmem242 (ENSSTUG00000027359) arid1b (ENSSTUG00000027017) CLDN20 (ENSSTUG00000026989) ENSSTUG00000026876 cnksr3 (ENSSTUG00000026824) PRKD3 (ENSSTUG00000026310) Salmo ANCESTRAL SPECIES 26 ENSGT00940000161652.b.b.p.b.a ENSGT00940000157701.k.a ENSGT00940000156464.mb.a.a ENSGT00940000156714.b.e ENSGT01030000234564.a.a.a.a.b.b.a.b ENSGT01000000220856 ENSGT00940000155734.lb #22 ENSGT00940000155623.ib.b.b ENSGT00940000155443.d.j ENSGT01090000260040.b.b.b.a.m.a.b.b ##37 ENSGT00940000157612.b.b #35 ENSGT00940000155982.e.b.h #33 ENSGT00390000013305.a.a.c #32 ENSGT00940000156483.h.b.e ENSGT00390000008642.w.b ENSGT00940000155634.q.b.d ENSGT00940000161252.h.k ENSGT00940000157012.l.d ENSGT00940000163429.A ENSGT00940000163429.C.a.b ENSGT00800000125320 ENSGT00950000183024.a.a.b.r.a River trout MODERN SPECIES 28 rnf8 (ENSSTUG00000042689) ENSSTUG00000042659 tmem151ba (ENSSTUG00000042634) TCTE1 (ENSSTUG00000042564) hsp90ab1 (ENSSTUG00000040989) nfkbiaa (ENSSTUG00000040946) psma6b (ENSSTUG00000040766) zgc:153383 (ENSSTUG00000040709) ENSSTUG00000040666 sox11b (ENSSTUG00000040648) ENSSTUG00000040606 id2b (ENSSTUG00000040584) kidins220b (ENSSTUG00000040160) mboat2b (ENSSTUG00000039639) ENSSTUG00000039622 e2f6 (ENSSTUG00000039582) #22 ASAP2 (ENSSTUG00000035969) ENSSTUG00000035845 ENSSTUG00000035820 ##37 GRHL1 (ENSSTUG00000035797) #35 klf11a (ENSSTUG00000035776) #33 RRM2 (ENSSTUG00000035221) #32 zdhhc14 (ENSSTUG00000035173) tmem242 (ENSSTUG00000035167) arid1b (ENSSTUG00000034853) CLDN20 (ENSSTUG00000034819) ENSSTUG00000034457 ipcef1 (ENSSTUG00000034404) cnksr3 (ENSSTUG00000034360) ENSSTUG00000034355 PRKD3 (ENSSTUG00000034207) Northern pike MODERN SPECIES 13 TCTE1 (ENSELUG00000013188) tmem151ba (ENSELUG00000013166) nfkbie (ENSELUG00000013153) slc35b2 (ENSELUG00000013109) hsp90ab1 (ENSELUG00000013060) nfkbiaa (ENSELUG00000013024) psma6b (ENSELUG00000013006) zgc:153383 (ENSELUG00000012982) ENSELUG00000030232 ENSELUG00000032191 ENSELUG00000033276 id2b (ENSELUG00000012805) ENSELUG00000012503 kidins220b (ENSELUG00000012717) mboat2b (ENSELUG00000012487) e2f6 (ENSELUG00000012437) #22 asap2b (ENSELUG00000012413) ENSELUG00000012340 ENSELUG00000012347 ENSELUG00000012322 b2ml (ENSELUG00000033862) b2ml (ENSELUG00000033258) B2MG (ENSELUG00000024345) tmbim4 (ENSELUG00000030724) ENSELUG00000031825 wif1 (ENSELUG00000012238) lemd3 (ENSELUG00000012187) msrb3 (ENSELUG00000012135) ENSELUG00000012092 dera (ENSELUG00000012050) mgst1.1 (ENSELUG00000011967) Acanthomorphata ANCESTRAL SPECIES 184 ENSGT00940000161983.b ENSGT01030000234667.b.f.a ENSGT00390000007441 ENSGT00940000155671.y.b ENSGT00390000003466 ENSGT00390000014122 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000177938 ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00940000155734 #22 ENSGT00940000167539 ENSGT00940000155699.a.a ENSGT00940000155443.d ENSGT00440000033827 #36 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l Cod MODERN SPECIES 13 ENSGMOG00000009332 nfkbiaa (ENSGMOG00000009326) psma6b (ENSGMOG00000009319) ENSGMOG00000009312 ENSGMOG00000034228 fbxo16 (ENSGMOG00000006779) fzd3a (ENSGMOG00000036153) cdc42bpab (ENSGMOG00000004971) ##23 lft1 (ENSGMOG00000026818) hnrnpub (ENSGMOG00000001755) ENSGMOG00000025770 ENSGMOG00000036691 cnstb (ENSGMOG00000024227) sccpdhb (ENSGMOG00000036474) ENSGMOG00000004734 e2f6 (ENSGMOG00000027601) #22 ENSGMOG00000024240 cpsf3 (ENSGMOG00000003157) ADAM17 (ENSGMOG00000003189) ENSGMOG00000014302 ##37 ENSGMOG00000024314 taf1b (ENSGMOG00000035265) #36 klf11a (ENSGMOG00000034525) #33 RRM2 (ENSGMOG00000025006) #32 RRM2 (ENSGMOG00000003512) #32 ENSGMOG00000003532 zdhhc14 (ENSGMOG00000001121) tmem242 (ENSGMOG00000022212) arid1b (ENSGMOG00000023203) CLDN20 (ENSGMOG00000026243) ENSGMOG00000029176 Euacanthomorphacea ANCESTRAL SPECIES 102 ENSGT00940000155671.y.b ENSGT00390000003466 ENSGT00390000014122 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000155734 #22 ENSGT00940000167539 ENSGT00940000155699.a.a ENSGT00940000155443.d ENSGT00440000033827 #36 ENSGT00940000155982.e.b #33 ENSGT00390000013305.a.a #32 ENSGT00940000155727.o.b ENSGT00940000156483.h.b ENSGT00390000008642 ENSGT00940000155634.q.b ENSGT00940000161252.h ENSGT00940000157012.l ENSGT01100000263529.a.a.a.a.a.c.a ENSGT00940000154395.a.a.b.b.g.b ENSGT00940000162312 Pinecone sodierfish MODERN SPECIES 16 ENSMMDG00005011204 ENSMMDG00005011202 crnkl1 (ENSMMDG00005011162) naa20 (ENSMMDG00005011150) ENSMMDG00005011057 COL12A1 (ENSMMDG00005010765) ptger2b (ENSMMDG00005010715) ptger2b (ENSMMDG00005010711) zfp36l1b (ENSMMDG00005010708) rad51b (ENSMMDG00005010705) ENSMMDG00005010701 allc (ENSMMDG00005010691) rps7 (ENSMMDG00005010678) rnaseh1 (ENSMMDG00005010675) myt1la (ENSMMDG00005010664) e2f6 (ENSMMDG00005010659) #22 asap2b (ENSMMDG00005010647) cpsf3 (ENSMMDG00005010604) ADAM17 (ENSMMDG00005003858) CFAP57 (ENSMMDG00005003602) ENSMMDG00005003593 TAF1B (ENSMMDG00005003582) #36 ENSMMDG00005003574 ENSMMDG00005003573 #35 ENSMMDG00005003569 rrm2 (ENSMMDG00005002616) #32 ENSMMDG00005002546 ENSMMDG00005002541 zdhhc14 (ENSMMDG00005018906) tmem242 (ENSMMDG00005018905) arid1b (ENSMMDG00005018880) Percomorphaceae ANCESTRAL SPECIES 66 ENSGT00940000177607 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00940000177839 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734 #22 Tiger tail seahorse MODERN SPECIES 182 galnt14 (ENSHCOG00000012547) si:ch211-229n2.6 (ENSHCOG00000012520) angel2 (ENSHCOG00000012501) VASH2 (ENSHCOG00000000357) ENSHCOG00000012471 ENSHCOG00000000355 flvcr1 (ENSHCOG00000012428) nsl1 (ENSHCOG00000012415) atf3 (ENSHCOG00000012406) pex3 (ENSHCOG00000012396) ENSHCOG00000012375 AIG1 (ENSHCOG00000012365) hivep2a (ENSHCOG00000012337) rnaseh1 (ENSHCOG00000012329) ENSHCOG00000012321 ENSHCOG00000012311 #22 rps7 (ENSHCOG00000012302) cnksr3 (ENSHCOG00000012263) PRKD3 (ENSHCOG00000012227) ndufaf7 (ENSHCOG00000012167) cebpz (ENSHCOG00000012132) CEBPZOS (ENSHCOG00000012005) xrn2 (ENSHCOG00000011994) nkx2.4b (ENSHCOG00000011908) ENSHCOG00000011887 AFDN (ENSHCOG00000011872) tdrd15 (ENSHCOG00000011795) rfx6 (ENSHCOG00000011783) vgll2a (ENSHCOG00000011770) ENSHCOG00000011760 wdr26b (ENSHCOG00000011696) Percomorphaceae_B DUPLICATION Percomorphaceae_B DUPLICATION Percomorphaceae_B ANCESTRAL SPECIES 18 ENSGT00940000173663 ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.i.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Percomorphaceae_C ANCESTRAL SPECIES 19 ENSGT00940000173663 ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.a ENSGT00940000160560.b.f.a.a.b ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT01030000235099 ENSGT00390000013305.a.a.i.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a Eupercaria ANCESTRAL SPECIES 16 ENSGT00940000155507.a.b ENSGT00940000154289.A.a.b ENSGT00940000154209.a.a.h ENSGT00390000009816 ENSGT00940000155312.a.b ENSGT00940000156048.e.a.b.a ENSGT00390000015102.a.a ENSGT00940000158238 ENSGT00530000063668.B ENSGT00940000158749 ENSGT00470000042287 ENSGT00500000044928 ENSGT00390000014424 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00390000010376 ENSGT00410000025918 ENSGT00940000154045.b ENSGT00940000164854.b ENSGT00940000156116.B ENSGT00940000154656.ob.b ENSGT01060000248685 ENSGT00530000063834.e.b ENSGT00940000154677.b.b ENSGT01030000234626.A.b ENSGT00950000182848.d Tetraodontidae ANCESTRAL SPECIES 15 ENSGT00940000155734.mb.a #22 ENSGT00940000165219 ENSGT00940000153417.B ENSGT00940000157241 ENSGT00940000164252.a.a ENSGT00940000154004.b ENSGT00940000160891 ENSGT01020000230412.B.a ENSGT00940000156072.a.a ENSGT00390000018632 ENSGT00940000158595 ENSGT00940000164220.h ENSGT00510000049207.a ENSGT00940000157632 ENSGT00950000183182.a.b ENSGT00940000156713.m Fugu MODERN SPECIES 7 NT5E (ENSTRUG00000014965) snx14 (ENSTRUG00000014825) syncrip (ENSTRUG00000014766) ENSTRUG00000014663 glo1 (ENSTRUG00000020714) hey2 (ENSTRUG00000026892) ENSTRUG00000025817 pex7 (ENSTRUG00000014572) SLC35D3 (ENSTRUG00000014555) ENSTRUG00000023206 NMBR (ENSTRUG00000013284) gje1a (ENSTRUG00000020284) vta1 (ENSTRUG00000013187) adgrg6 (ENSTRUG00000013043) ENSTRUG00000022775 ENSTRUG00000022238 #22 msraa (ENSTRUG00000024429) ENSTRUG00000020135 ift172 (ENSTRUG00000021504) cad (ENSTRUG00000032900) dnajc5ga (ENSTRUG00000012212) trim54 (ENSTRUG00000012045) mpv17 (ENSTRUG00000012037) ENSTRUG00000011831 slc30a2 (ENSTRUG00000011687) gtf3c2 (ENSTRUG00000011616) FABP7 (ENSTRUG00000030148) ENSTRUG00000032748 FABP7 (ENSTRUG00000029248) ZNF512 (ENSTRUG00000011596) FABP7 (ENSTRUG00000032859) Tetraodon MODERN SPECIES 5 ENSTNIG00000002816 IMPG1 (ENSTNIG00000002817) HTR1B (ENSTNIG00000002818) NT5E (ENSTNIG00000002819) snx14 (ENSTNIG00000002820) syncrip (ENSTNIG00000002821) ENSTNIG00000002822 glo1 (ENSTNIG00000002823) ENSTNIG00000002824 SLC35D3 (ENSTNIG00000000522) ENSTNIG00000006027 NMBR (ENSTNIG00000006026) itgb1bp1 (ENSTNIG00000006025) asap2a (ENSTNIG00000006024) adgrg6 (ENSTNIG00000006023) ENSTNIG00000006022 #22 msraa (ENSTNIG00000000858) ift172 (ENSTNIG00000005431) cad (ENSTNIG00000005430) dnajc5ga (ENSTNIG00000005429) trim54 (ENSTNIG00000005428) mpv17 (ENSTNIG00000005427) ENSTNIG00000005426 slc30a2 (ENSTNIG00000005425) ENSTNIG00000005424 ENSTNIG00000004202 ENSTNIG00000004201 ZNF512 (ENSTNIG00000004200) clvs2 (ENSTNIG00000003391) smpdl3a (ENSTNIG00000003392) fabp7b (ENSTNIG00000003393) Eupecaria_A ANCESTRAL SPECIES 52 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a Eupecaria_B ANCESTRAL SPECIES 47 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a Eupecaria_C ANCESTRAL SPECIES 16 ENSGT00530000063775.a.b ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.i.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Eupercaria_incertae_sedis ANCESTRAL SPECIES 54 ENSGT00530000063775.a.b ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a.i.b #32 ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Large yellow croaker MODERN SPECIES 478 syncrip (ENSLCRG00005002395) ENSLCRG00005002452 glo1 (ENSLCRG00005002475) hey2 (ENSLCRG00005002486) ENSLCRG00005002494 ENSLCRG00005002507 SLC35D3 (ENSLCRG00005002530) ENSLCRG00005002535 TXLNB (ENSLCRG00005002541) NMBR (ENSLCRG00005002556) gje1a (ENSLCRG00005002562) vta1 (ENSLCRG00005002570) adgrg6 (ENSLCRG00005002593) ENSLCRG00005002630 ENSLCRG00005002646 e2f6 (ENSLCRG00005002742) #22 ENSLCRG00005002752 CLDN20 (ENSLCRG00005002758) ENSLCRG00005002761 ENSLCRG00005002766 ENSLCRG00005002770 tmem242 (ENSLCRG00005002784) ENSLCRG00005002788 zdhhc14 (ENSLCRG00005002794) RRM2 (ENSLCRG00005002838) #32 ENSLCRG00005003574 ENSLCRG00005003580 #32 klf11a (ENSLCRG00005003582) #33 taf1b (ENSLCRG00005003586) #36 ADAM17 (ENSLCRG00005003594) cpsf3 (ENSLCRG00005003797) European seabass MODERN SPECIES 7 NT5E (ENSDLAG00005021439) mei4 (ENSDLAG00005021523) HTR1B (ENSDLAG00005021540) ENSDLAG00005031357 myo6a (ENSDLAG00005021692) SENP6 (ENSDLAG00005022774) FILIP1 (ENSDLAG00005002841) TMEM30A (ENSDLAG00005031954) COX7A2 (ENSDLAG00005022694) COL12A1 (ENSDLAG00005022864) ENSDLAG00005029516 adgrg6 (ENSDLAG00005024254) vta1 (ENSDLAG00005024283) gje1a (ENSDLAG00005029465) NMBR (ENSDLAG00005029527) ENSDLAG00005033043 #22 ENSDLAG00005024299 CLDN20 (ENSDLAG00005029173) ENSDLAG00005000190 ENSDLAG00005000200 ENSDLAG00005031773 arid1b (ENSDLAG00005000227) TMEM242 (ENSDLAG00005027678) zdhhc14 (ENSDLAG00005000257) ENSDLAG00005033720 #32 ENSDLAG00005000306 #32 ENSDLAG00005002913 ENSDLAG00005033801 klf11a (ENSDLAG00005031352) #33 taf1b (ENSDLAG00005015536) #36 ADAM17 (ENSDLAG00005015560) Perciformes ANCESTRAL SPECIES 67 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.a ENSGT00940000160560.b.f.a.a.b Perciformes_a ANCESTRAL SPECIES 142 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.a ENSGT00940000160560.b.f.a.a.b Pike perch MODERN SPECIES 537 ENSSLUG00000004632 #22 Channel bull blenny MODERN SPECIES 107 ENSCGOG00000016269 ENSCGOG00000016273 ENSCGOG00000016274 ENSCGOG00000016276 #22 ENSCGOG00000016281 CLDN20 (ENSCGOG00000016284) CLDN20 (ENSCGOG00000016285) ENSCGOG00000016289 Ballan wrasse DUPLICATION Ballan wrasse MODERN SPECIES 661 cnksr3 (ENSLBEG00000004290) ENSLBEG00000004344 rps7 (ENSLBEG00000004375) rnaseh1 (ENSLBEG00000004480) myt1la (ENSLBEG00000004673) ENSLBEG00000004729 #22 Ballan wrasse MODERN SPECIES 891 ENSLBEG00000000139 ENSLBEG00000000132 ENSLBEG00000000129 #22 ENSLBEG00000028533 Percomorphaceae_D ANCESTRAL SPECIES 18 ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000168667 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.a ENSGT00940000160560.b.f.a.a.b ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 Anabantaria ANCESTRAL SPECIES ENSGT00940000155734.mb.a #22 Anabantoidei ANCESTRAL SPECIES 15 ENSGT00940000155999.e.b ENSGT00940000159137.a ENSGT00940000162247.f ENSGT00670000098098 ENSGT00400000024959 ENSGT00940000162552.a.b ENSGT00390000004987 ENSGT00550000074931 ENSGT00550000075046 ENSGT00940000155926.e ENSGT00940000154923.C.w.b ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.a #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00940000178942 ENSGT00390000001374 ENSGT00720000108846.b ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.a ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00390000012703.a ENSGT00940000157391 Climbing perch MODERN SPECIES 15 nkx2.2b (ENSATEG00000001390) ENSATEG00000001285 xrn2 (ENSATEG00000001273) ENSATEG00000028183 INSM1 (ENSATEG00000001248) CFAP61 (ENSATEG00000001144) crnkl1 (ENSATEG00000001068) naa20 (ENSATEG00000026382) ENSATEG00000000953 ENSATEG00000000699 ENSATEG00000000692 ENSATEG00000000644 rps7 (ENSATEG00000027580) ENSATEG00000000598 myt1la (ENSATEG00000000509) ENSATEG00000000503 #22 ENSATEG00000028915 hivep2a (ENSATEG00000000413) ENSATEG00000000377 ENSATEG00000000316 pex3 (ENSATEG00000000247) atf3 (ENSATEG00000000223) batf3 (ENSATEG00000025732) nsl1 (ENSATEG00000024318) tatdn3 (ENSATEG00000024314) ENSATEG00000024311 flvcr1 (ENSATEG00000024307) ENSATEG00000024269 ENSATEG00000029781 ENSATEG00000026415 ENSATEG00000027805 Siamese fighting fish MODERN SPECIES 13 NKX2-4 (ENSBSLG00000010987) xrn2 (ENSBSLG00000010798) ENSBSLG00000010750 insm1a (ENSBSLG00000010738) ENSBSLG00000010682 CFAP61 (ENSBSLG00000010607) crnkl1 (ENSBSLG00000009842) naa20 (ENSBSLG00000009801) ENSBSLG00000009786 COL12A1 (ENSBSLG00000006994) cnksr3 (ENSBSLG00000006503) ENSBSLG00000006470 rps7 (ENSBSLG00000006365) rnaseh1 (ENSBSLG00000006311) myt1la (ENSBSLG00000005712) ENSBSLG00000005629 #22 hivep2a (ENSBSLG00000005581) AIG1 (ENSBSLG00000005552) ENSBSLG00000005459 pex3 (ENSBSLG00000005275) atf3 (ENSBSLG00000005189) batf3 (ENSBSLG00000005157) ENSBSLG00000005134 ENSBSLG00000005101 nsl1 (ENSBSLG00000005065) flvcr1 (ENSBSLG00000025554) ENSBSLG00000025524 ENSBSLG00000025427 ENSBSLG00000024969 ENSBSLG00000024903 VASH2 (ENSBSLG00000024894) Carangaria ANCESTRAL SPECIES 18 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000168667 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.i.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Pleuronectoidei ANCESTRAL SPECIES 56 ENSGT00940000157418.a.d ENSGT00940000160083 ENSGT00940000157264 ENSGT00940000160636 ENSGT00390000009312.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00940000168667 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000156714.b ENSGT01030000234564.a.a.a.a.b.b ENSGT00390000007441 Turbot MODERN SPECIES 12 ENSSMAG00000027099 ENSSMAG00000028534 ENSSMAG00000009249 ENSSMAG00000009266 ENSSMAG00000009302 ENSSMAG00000033011 ENSSMAG00000031973 ENSSMAG00000026004 ENSSMAG00000009362 NMBR (ENSSMAG00000009377) gje1a (ENSSMAG00000009406) vta1 (ENSSMAG00000028466) ENSSMAG00000026449 adgrg6 (ENSSMAG00000009470) ENSSMAG00000009545 ENSSMAG00000009558 #22 TIAM2 (ENSSMAG00000009569) CLDN20 (ENSSMAG00000009601) arid1b (ENSSMAG00000009607) TMEM242 (ENSSMAG00000009642) ENSSMAG00000037802 #32 ENSSMAG00000027127 RRM2 (ENSSMAG00000027650) #32 klf11a (ENSSMAG00000034639) #33 taf1b (ENSSMAG00000024265) #36 ADAM17 (ENSSMAG00000028876) cpsf3 (ENSSMAG00000026608) ENSSMAG00000032655 ENSSMAG00000037489 ENSSMAG00000022286 allc (ENSSMAG00000033088) Carangaria_A ANCESTRAL SPECIES 35 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.i.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Barramundi perch MODERN SPECIES 55 syncrip (ENSLCAG00010018447) ENSLCAG00010018432 glo1 (ENSLCAG00010018427) hey2 (ENSLCAG00010018424) ENSLCAG00010018416 pex7 (ENSLCAG00010018408) SLC35D3 (ENSLCAG00010018404) ENSLCAG00010018401 ENSLCAG00010018397 NMBR (ENSLCAG00010018389) gje1a (ENSLCAG00010018386) vta1 (ENSLCAG00010018380) adgrg6 (ENSLCAG00010018368) ENSLCAG00010018364 ENSLCAG00010018363 ENSLCAG00010018355 #22 TIAM2 (ENSLCAG00010018334) CLDN20 (ENSLCAG00010018317) ENSLCAG00010018304 ENSLCAG00010018299 arid1b (ENSLCAG00010018290) tmem242 (ENSLCAG00010018282) zdhhc14 (ENSLCAG00010018279) RRM2 (ENSLCAG00010018270) #32 Seriola ANCESTRAL SPECIES 4 ENSGT00940000164440 ENSGT00940000156417.g.b ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.d.a.a.a.a.b ENSGT01100000263513.a.a.b.b.b.b.a.a.b.a.b.a.b.a.d.a.a.a.b ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.j.t #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j.s #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Greater amberjack MODERN SPECIES 10 ENSSDUG00000001797 pex7 (ENSSDUG00000001806) SLC35D3 (ENSSDUG00000001843) ENSSDUG00000001858 ENSSDUG00000001882 ENSSDUG00000001903 ENSSDUG00000001916 ENSSDUG00000002012 ENSSDUG00000002046 NMBR (ENSSDUG00000002082) gje1a (ENSSDUG00000002109) vta1 (ENSSDUG00000002127) adgrg6 (ENSSDUG00000002168) ENSSDUG00000002216 ENSSDUG00000002225 e2f6 (ENSSDUG00000002306) #22 ENSSDUG00000002323 CLDN20 (ENSSDUG00000002346) ENSSDUG00000002359 ENSSDUG00000002417 ENSSDUG00000002453 arid1b (ENSSDUG00000002475) tmem242 (ENSSDUG00000002516) zdhhc14 (ENSSDUG00000002542) LGALS8 (ENSSDUG00000002575) RRM2 (ENSSDUG00000002665) #32 klf11a (ENSSDUG00000002709) #33 taf1b (ENSSDUG00000002726) #36 ADAM17 (ENSSDUG00000002739) cpsf3 (ENSSDUG00000002828) asap2b (ENSSDUG00000002927) Yellowtail amberjack MODERN SPECIES 2867 ENSSLDG00000003606 ENSSLDG00000003639 ENSSLDG00000003713 ENSSLDG00000003845 ENSSLDG00000004034 NMBR (ENSSLDG00000004188) gje1a (ENSSLDG00000004210) vta1 (ENSSLDG00000004251) adgrg6 (ENSSLDG00000004313) ENSSLDG00000004425 ENSSLDG00000004446 e2f6 (ENSSLDG00000004556) #22 ENSSLDG00000004571 Ovalentaria ANCESTRAL SPECIES 19 ENSGT00940000173663 ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.i.a #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Ovalentaria_B ANCESTRAL SPECIES 32 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.i.a #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 Cichlidae ANCESTRAL SPECIES 12 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000161652.b.a Pseudocrenilabrinae ANCESTRAL SPECIES 6 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000161652.b.a Nile tilapia MODERN SPECIES 6 ENSONIG00000031790 ENSONIG00000032992 syncrip (ENSONIG00000030265) ENSONIG00000018770 glo1 (ENSONIG00000018771) hey2 (ENSONIG00000018772) SLC35D3 (ENSONIG00000018773) txlnb (ENSONIG00000018776) nmbr (ENSONIG00000042897) GJE1 (ENSONIG00000018781) vta1 (ENSONIG00000018782) adgrg6 (ENSONIG00000018784) ENSONIG00000032350 ENSONIG00000007342 ENSONIG00000030951 ENSONIG00000027663 #22 ENSONIG00000018786 CLDN20 (ENSONIG00000021260) ENSONIG00000028607 ENSONIG00000018790 arid1b (ENSONIG00000018791) tmem242 (ENSONIG00000035750) zdhhc14 (ENSONIG00000018796) RRM2 (ENSONIG00000018798) #32 ENSONIG00000018802 RRM2 (ENSONIG00000018804) #32 klf11a (ENSONIG00000018808) #33 taf1b (ENSONIG00000018809) #36 ADAM17 (ENSONIG00000018811) cpsf3 (ENSONIG00000018812) asap2b (ENSONIG00000018817) Pseudocrenilabrinae_A ANCESTRAL SPECIES 3 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b.d ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.j.f #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j.e #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 Haplochromini ANCESTRAL SPECIES 13 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b.d ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.j.e.a #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j.e.b #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 Burton s mouthbrooder MODERN SPECIES 499 NMBR (ENSHBUG00000010866) gje1a (ENSHBUG00000010858) vta1 (ENSHBUG00000010834) adgrg6 (ENSHBUG00000010795) ENSHBUG00000010727 ENSHBUG00000010712 ENSHBUG00000010703 ENSHBUG00000010678 ENSHBUG00000010663 #22 ENSHBUG00000010653 CLDN20 (ENSHBUG00000010610) ENSHBUG00000010596 arid1b (ENSHBUG00000010565) tmem242 (ENSHBUG00000010534) zdhhc14 (ENSHBUG00000010508) ENSHBUG00000010464 RRM2 (ENSHBUG00000010408) #32 klf11a (ENSHBUG00000010369) #33 taf1b (ENSHBUG00000010356) #36 ADAM17 (ENSHBUG00000010340) cpsf3 (ENSHBUG00000001188) asap2b (ENSHBUG00000010200) ENSHBUG00000010067 Haplochromini_A ANCESTRAL SPECIES 11 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00600000084860.A.b ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b.d ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.j.e.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j.e.a #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 Haplochromini_B ANCESTRAL SPECIES 49 ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621 ENSGT00940000182072 ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b.d ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.j.e.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j.e.a #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 Zebra mbuna MODERN SPECIES 1097 syncrip (ENSMZEG00005013344) ENSMZEG00005013355 ENSMZEG00005013363 glo1 (ENSMZEG00005013384) hey2 (ENSMZEG00005013903) pex7 (ENSMZEG00005013932) SLC35D3 (ENSMZEG00005013970) TXLNB (ENSMZEG00005013977) NMBR (ENSMZEG00005014002) gje1a (ENSMZEG00005014046) vta1 (ENSMZEG00005014056) adgrg6 (ENSMZEG00005014092) ENSMZEG00005014115 ENSMZEG00005014120 ENSMZEG00005014132 ENSMZEG00005014148 #22 ENSMZEG00005014154 CLDN20 (ENSMZEG00005014168) arid1b (ENSMZEG00005014174) tmem242 (ENSMZEG00005014213) zdhhc14 (ENSMZEG00005014228) RRM2 (ENSMZEG00005014254) #32 ENSMZEG00005014281 RRM2 (ENSMZEG00005014295) #32 klf11a (ENSMZEG00005014315) #33 taf1b (ENSMZEG00005014323) #36 ADAM17 (ENSMZEG00005014337) cpsf3 (ENSMZEG00005014358) asap2b (ENSMZEG00005014395) ENSMZEG00005014433 allc (ENSMZEG00005014438) Eastern happy MODERN SPECIES 6 ENSACLG00000012366 glo1 (ENSACLG00000012395) hey2 (ENSACLG00000012873) pex7 (ENSACLG00000012893) SLC35D3 (ENSACLG00000012917) TXLNB (ENSACLG00000013102) ENSACLG00000013123 NMBR (ENSACLG00000013507) gje1a (ENSACLG00000013513) vta1 (ENSACLG00000013532) adgrg6 (ENSACLG00000013577) ENSACLG00000013770 ENSACLG00000013838 ENSACLG00000013844 ENSACLG00000013852 ENSACLG00000013873 #22 ENSACLG00000013908 CLDN20 (ENSACLG00000013937) ENSACLG00000013950 arid1b (ENSACLG00000014037) tmem242 (ENSACLG00000014130) zdhhc14 (ENSACLG00000014145) ENSACLG00000014199 RRM2 (ENSACLG00000014215) #32 ENSACLG00000014297 RRM2 (ENSACLG00000014315) #32 klf11a (ENSACLG00000014371) #33 taf1b (ENSACLG00000014383) #36 ADAM17 (ENSACLG00000014403) cpsf3 (ENSACLG00000014484) asap2b (ENSACLG00000014676) P. nyererei MODERN SPECIES 343 glo1 (ENSPNYG00000003326) hey2 (ENSPNYG00000003425) ENSPNYG00000003455 pex7 (ENSPNYG00000003473) SLC35D3 (ENSPNYG00000003503) TXLNB (ENSPNYG00000003527) NMBR (ENSPNYG00000003552) ENSPNYG00000003609 gje1a (ENSPNYG00000003657) vta1 (ENSPNYG00000003685) adgrg6 (ENSPNYG00000003732) ENSPNYG00000003790 ENSPNYG00000003804 ENSPNYG00000003816 ENSPNYG00000003838 ENSPNYG00000003869 #22 ENSPNYG00000003906 CLDN20 (ENSPNYG00000003933) ENSPNYG00000003950 zdhhc14 (ENSPNYG00000003969) RRM2 (ENSPNYG00000004004) #32 LGALS8 (ENSPNYG00000004063) RRM2 (ENSPNYG00000004083) #32 klf11a (ENSPNYG00000004150) #33 taf1b (ENSPNYG00000004205) #36 ADAM17 (ENSPNYG00000004303) cpsf3 (ENSPNYG00000004405) asap2b (ENSPNYG00000004479) ENSPNYG00000004532 ENSPNYG00000004570 allc (ENSPNYG00000004658) Lyretail cichlid MODERN SPECIES 318 glo1 (ENSNBRG00000006060) hey2 (ENSNBRG00000006009) pex7 (ENSNBRG00000005997) SLC35D3 (ENSNBRG00000005984) TXLNB (ENSNBRG00000005969) ENSNBRG00000005959 ENSNBRG00000005900 NMBR (ENSNBRG00000005861) gje1a (ENSNBRG00000005844) vta1 (ENSNBRG00000005806) ENSNBRG00000005779 adgrg6 (ENSNBRG00000005745) ENSNBRG00000005729 ENSNBRG00000005700 ENSNBRG00000005674 ENSNBRG00000005650 #22 ENSNBRG00000005610 CLDN20 (ENSNBRG00000005590) arid1b (ENSNBRG00000005440) tmem242 (ENSNBRG00000005419) zdhhc14 (ENSNBRG00000005388) RRM2 (ENSNBRG00000005350) #32 ENSNBRG00000005339 RRM2 (ENSNBRG00000005056) #32 klf11a (ENSNBRG00000005010) #33 taf1b (ENSNBRG00000004906) #36 ADAM17 (ENSNBRG00000004857) cpsf3 (ENSNBRG00000004770) ENSNBRG00000004711 ENSNBRG00000004685 allc (ENSNBRG00000004578) Midas cichlid MODERN SPECIES 1279 vta1 (ENSACIG00000001281) adgrg6 (ENSACIG00000001306) ENSACIG00000001328 ENSACIG00000001338 e2f6 (ENSACIG00000001358) #22 ENSACIG00000001421 ENSACIG00000001438 CLDN20 (ENSACIG00000001461) Pomacentridae ANCESTRAL SPECIES 81 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00390000013305.a.a.i.b #32 ENSGT00940000155727.o.b ENSGT00390000013305.a.a.i.a #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT01100000263513.a.a.b.b.b.b.b.a.a.d.a.a ENSGT00940000162312.h.d Bicolor damselfish MODERN SPECIES 968 ENSSPAG00000020910 ENSSPAG00000020918 ENSSPAG00000020936 ENSSPAG00000021085 #22 ENSSPAG00000021101 CLDN20 (ENSSPAG00000021123) arid1b (ENSSPAG00000021130) tmem242 (ENSSPAG00000021158) zdhhc14 (ENSSPAG00000021181) ENSSPAG00000021239 Atherinomorphae ANCESTRAL SPECIES 27 ENSGT00950000182856.a.b.b ENSGT00940000173663 ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000156714.b Cyprinodontiformes ANCESTRAL SPECIES 14 ENSGT00950000182856.a.b.b ENSGT00940000173663 ENSGT00940000153511.b.r ENSGT00940000177253 ENSGT00940000157865 ENSGT00390000009312.a ENSGT00940000160636 ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000156714.b Aplocheiloidei ANCESTRAL SPECIES 95 ENSGT00940000156078.d ENSGT01010000222287.B.b.a.b.b.a ENSGT00530000063775.a.b ENSGT00950000182856.a.b.b ENSGT00940000153511.b.r ENSGT00940000157865 ENSGT00940000160636 ENSGT00940000157264 ENSGT00940000160083 ENSGT00940000157418.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc ENSGT00940000168667 ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT00940000155727.o.b ENSGT00390000013305.a.a.j #32 ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000161652.b.a ENSGT00940000156714.b Mangrove rivulus MODERN SPECIES 72 ENSKMAG00000017687 ENSKMAG00000017693 chrna5 (ENSKMAG00000017700) CHRNA3 (ENSKMAG00000017718) CHRNB4 (ENSKMAG00000017731) ube2q1 (ENSKMAG00000017749) SHF (ENSKMAG00000017822) ubl7b (ENSKMAG00000017884) cd276 (ENSKMAG00000017928) insyn1 (ENSKMAG00000017939) loxl1 (ENSKMAG00000017963) SCAMP5 (ENSKMAG00000017995) IGDCC4 (ENSKMAG00000018013) adgrg6 (ENSKMAG00000018070) ENSKMAG00000018158 e2f6 (ENSKMAG00000018180) #22 Turquoise killifish MODERN SPECIES 1613 ASB2 (ENSNFUG00015004006) PPP4R4 (ENSNFUG00015003993) SERPINA10A (ENSNFUG00015003977) xrcc3 (ENSNFUG00015003970) ENSNFUG00015003925 ENSNFUG00015003907 BTBD6B (ENSNFUG00015003905) ENSNFUG00015003903 ENSNFUG00015003899 E2F6 (ENSNFUG00015003897) #22 NMBR (ENSNFUG00015003896) gje1a (ENSNFUG00015003894) VTA1 (ENSNFUG00015003883) GPR126 (ENSNFUG00015003854) ENSNFUG00015003838 E2F6 (ENSNFUG00015003832) #22 ENSNFUG00015003827 CLDN20 (ENSNFUG00015003823) TMEM242 (ENSNFUG00015003813) zdhhc14 (ENSNFUG00015003806) Nfu_g_1_018818 (ENSNFUG00015003744) #32 LGALS8 (ENSNFUG00015003716) RRM2 (ENSNFUG00015003694) #32 KLF11A (ENSNFUG00015003683) #33 TAF1B (ENSNFUG00015003677) #36 ENSNFUG00015003672 ADAM17B (ENSNFUG00015003637) cpsf3 (ENSNFUG00015003613) ASAP2B (ENSNFUG00015003583) allc (ENSNFUG00015003547) cep43 (ENSNFUG00015003540) Cyprinodontoidei ANCESTRAL SPECIES 32 ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b.e.b ENSGT00940000160560.b.f.a.a.a ENSGT00940000160560.b.f.a.a.b.e.a ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT01030000235099 ENSGT00390000013305.a.a.j #32 ENSGT00940000155727.o.b ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a Poeciliinae ANCESTRAL SPECIES 15 ENSGT00390000014679.d.b ENSGT00940000158182 ENSGT00940000157391 ENSGT00390000012703.a ENSGT00930000151352 ENSGT00940000162649.f.a.b.a.a.a.b.b.b.j.e ENSGT00940000162649.f.a.b.a.a.a.b.b.b.j.f.a ENSGT00940000162649.f.a.b.a.a.a.a.c ENSGT00970000193439.b ENSGT01080000257598 ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00970000193439.a.b.b.a ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT01030000235099 ENSGT00390000013305.a.a.j #32 ENSGT00940000155727.o.b ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 Poecilia ANCESTRAL SPECIES 9 ENSGT00930000151352.m.a ENSGT00940000158683.a.a.a.b ENSGT00530000063881.a.a ENSGT00940000158298 ENSGT00390000014679.d.b ENSGT00940000158182 ENSGT00940000157391 ENSGT00390000012703.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b.j.e ENSGT00940000162649.f.a.b.a.a.a.b.b.b.j.f.a ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00970000193439.a.a.a ENSGT00970000193439.a.b.b.a ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT01030000235099 ENSGT00390000013305.a.a.j #32 ENSGT00940000155727.o.b ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 NAME_6 ANCESTRAL SPECIES 233 ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc.f ENSGT00940000155621.vc.e ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00970000193439.a.a.a ENSGT00970000193439.a.b.b.a ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000155634.q.b ENSGT00390000008642 ENSGT00940000156483.h.b ENSGT01030000235099 ENSGT00390000013305.a.a.j #32 ENSGT00940000155727.o.b ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00940000155699.a.a ENSGT00940000167539 Amazon molly MODERN SPECIES 418 ZFAND3 (ENSPFOG00000014308) galnt14 (ENSPFOG00000014340) angel2 (ENSPFOG00000014638) VASH2 (ENSPFOG00000014659) ENSPFOG00000014702 ENSPFOG00000014884 ENSPFOG00000023646 ENSPFOG00000024705 ENSPFOG00000024275 NMBR (ENSPFOG00000014902) gje1a (ENSPFOG00000014954) vta1 (ENSPFOG00000014976) adgrg6 (ENSPFOG00000015010) adgrg6 (ENSPFOG00000015121) ENSPFOG00000021802 ENSPFOG00000015220 #22 ENSPFOG00000023457 ENSPFOG00000015231 ENSPFOG00000015239 CLDN20 (ENSPFOG00000020600) ENSPFOG00000015368 ENSPFOG00000015382 ENSPFOG00000015455 ENSPFOG00000015493 ENSPFOG00000015517 tmem242 (ENSPFOG00000015592) zdhhc14 (ENSPFOG00000015608) rrm2 (ENSPFOG00000015666) #32 LGALS8 (ENSPFOG00000015699) klf11a (ENSPFOG00000015744) #33 taf1b (ENSPFOG00000015766) #36 Sailfin molly MODERN SPECIES 977 ENSPLAG00000000912 ENSPLAG00000000910 #22 ENSPLAG00000000905 ENSPLAG00000000903 CLDN20 (ENSPLAG00000000902) arid1b (ENSPLAG00000000900) tmem242 (ENSPLAG00000000898) zdhhc14 (ENSPLAG00000000896) ENSPLAG00000000894 rrm2 (ENSPLAG00000000893) #32 LGALS8 (ENSPLAG00000000004) klf11a (ENSPLAG00000000889) #33 taf1b (ENSPLAG00000000887) #36 ADAM17 (ENSPLAG00000000884) cpsf3 (ENSPLAG00000000882) asap2b (ENSPLAG00000000881) ENSPLAG00000000877 Guppy MODERN SPECIES 452 ENSPREG00000014110 SLC35D3 (ENSPREG00000014126) pex7 (ENSPREG00000014150) ENSPREG00000014187 ENSPREG00000014207 ENSPREG00000014222 ENSPREG00000014233 ENSPREG00000014247 ENSPREG00000014286 ENSPREG00000014299 NMBR (ENSPREG00000014308) gje1a (ENSPREG00000014325) vta1 (ENSPREG00000014344) adgrg6 (ENSPREG00000014397) ENSPREG00000014430 ENSPREG00000014446 #22 ENSPREG00000014465 ENSPREG00000014474 CLDN20 (ENSPREG00000014486) arid1b (ENSPREG00000014523) tmem242 (ENSPREG00000014564) zdhhc14 (ENSPREG00000014577) ENSPREG00000014590 rrm2 (ENSPREG00000014623) #32 ENSPREG00000014721 klf11a (ENSPREG00000014748) #33 taf1b (ENSPREG00000014770) #36 ENSPREG00000014818 ADAM17 (ENSPREG00000014847) cpsf3 (ENSPREG00000014875) ENSPREG00000014904 Platyfish MODERN SPECIES 6 ENSXMAG00000026033 ENSXMAG00000011025 ENSXMAG00000029025 ENSXMAG00000026067 ENSXMAG00000024572 ENSXMAG00000027311 ENSXMAG00000011026 ENSXMAG00000027220 ENSXMAG00000026770 ENSXMAG00000028450 NMBR (ENSXMAG00000022284) gje1a (ENSXMAG00000021134) vta1 (ENSXMAG00000021844) adgrg6 (ENSXMAG00000009992) ENSXMAG00000027799 ENSXMAG00000009986 #22 ENSXMAG00000028558 ENSXMAG00000016002 ENSXMAG00000009976 CLDN20 (ENSXMAG00000020180) ENSXMAG00000009973 ENSXMAG00000025845 ENSXMAG00000009971 arid1b (ENSXMAG00000009940) tmem242 (ENSXMAG00000009938) zdhhc14 (ENSXMAG00000009927) rrm2 (ENSXMAG00000009907) #32 LGALS8 (ENSXMAG00000009889) klf11a (ENSXMAG00000009885) #33 taf1b (ENSXMAG00000009858) #36 ADAM17 (ENSXMAG00000009810) NAME_4 ANCESTRAL SPECIES 315 ENSGT01100000263512.b.a ENSGT01090000260098.A ENSGT00390000011342 ENSGT00940000155621.vc ENSGT00950000183053.B ENSGT00940000155734.mb.a #22 ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00940000160560.b.f.a.a.b.e.b ENSGT00940000160560.b.f.a.a.a Sheepshead minnow MODERN SPECIES 475 NMBR (ENSCVAG00000014407) gje1a (ENSCVAG00000014427) vta1 (ENSCVAG00000014530) adgrg6 (ENSCVAG00000000369) ENSCVAG00000014590 ENSCVAG00000014595 #22 ENSCVAG00000014627 CLDN20 (ENSCVAG00000014636) ENSCVAG00000014640 Mummichog MODERN SPECIES 479 adgrg6 (ENSFHEG00000017968) ENSFHEG00000017990 ENSFHEG00000018002 #22 ENSFHEG00000018013 CLDN20 (ENSFHEG00000018034) ENSFHEG00000018052 ENSFHEG00000018069 ENSFHEG00000018078 Oryzias ANCESTRAL SPECIES 38 ENSGT00940000156671 ENSGT00940000157142 ENSGT00940000158514 ENSGT00940000154347.b.a ENSGT00940000157058.k ENSGT00940000155691.c.b ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.a #22 ENSGT00940000156512.b.b ENSGT00940000163460.a.a.b ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000156714.b ENSGT00390000007441 ENSGT01030000234667.b.f.a ENSGT00950000182772.A.a.b.`b.b ENSGT00940000163655.b ENSGT01030000234517.H.a ##23 ENSGT00950000183136.a.b ENSGT00390000013955 ENSGT00940000155144.m ENSGT00390000010349.a.a Oryzias_b ANCESTRAL SPECIES 55 ENSGT00940000156671 ENSGT00940000157142 ENSGT00940000158514 ENSGT00940000154347.b.a ENSGT00940000157058.k ENSGT00940000155691.c.b ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.a #22 ENSGT00940000156512.b.b ENSGT00940000163460.a.a.b ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000156714.b ENSGT00390000007441 ENSGT01030000234667.b.f.a ENSGT00950000182772.A.a.b.`b.b ENSGT00940000163655.b Indian medaka MODERN SPECIES 22 dll4 (ENSOMEG00000003701) fynb (ENSOMEG00000003649) ENSOMEG00000003626 ccn6 (ENSOMEG00000003611) tube1 (ENSOMEG00000003592) ENSOMEG00000003553 marcksa (ENSOMEG00000003511) HDAC2 (ENSOMEG00000003501) HS3ST5 (ENSOMEG00000003464) FRK (ENSOMEG00000003439) nt5dc1 (ENSOMEG00000003405) COL10A1 (ENSOMEG00000003386) dse (ENSOMEG00000003376) ENSOMEG00000003363 GPR63 (ENSOMEG00000003355) e2f6 (ENSOMEG00000003348) #22 hivep2a (ENSOMEG00000003314) clpp (ENSOMEG00000003271) aldh3b1 (ENSOMEG00000003237) ppp4cb (ENSOMEG00000003223) zgc:86896 (ENSOMEG00000003180) wipi1 (ENSOMEG00000003137) SLC16A6 (ENSOMEG00000000066) gna13a (ENSOMEG00000003099) rgs9a (ENSOMEG00000003083) COG1 (ENSOMEG00000003049) ENSOMEG00000003034 glyr1 (ENSOMEG00000003013) pyya (ENSOMEG00000002972) ENSOMEG00000002948 ENSOMEG00000002860 Javanese ricefish MODERN SPECIES 16 sel1l (ENSOJAG00000017956) ENSOJAG00000018502 fkbp6 (ENSOJAG00000018513) tmem244 (ENSOJAG00000018522) ENSOJAG00000018538 ENSOJAG00000018547 INF2 (ENSOJAG00000018562) klf11a (ENSOJAG00000018633) #33 ENSOJAG00000018653 #36 ENSOJAG00000019239 PRKD3 (ENSOJAG00000019421) cnksr3 (ENSOJAG00000020203) rps7 (ENSOJAG00000020241) rnaseh1 (ENSOJAG00000020297) myt1la (ENSOJAG00000020313) e2f6 (ENSOJAG00000020421) #22 hivep2a (ENSOJAG00000020438) ENSOJAG00000020450 ENSOJAG00000020467 ENSOJAG00000020472 cpsf3 (ENSOJAG00000020520) asap2b (ENSOJAG00000020916) ENSOJAG00000021586 allc (ENSOJAG00000021592) ENSOJAG00000021634 ckbb (ENSOJAG00000021637) ccr6a (ENSOJAG00000021679) cep43 (ENSOJAG00000021689) ENSOJAG00000021771 ENSOJAG00000021773 Oryzias_a ANCESTRAL SPECIES 48 ENSGT00940000156671 ENSGT00940000157142 ENSGT00940000158514 ENSGT00940000154347.b.a ENSGT00940000157058.k ENSGT00940000155691.c.b.g ENSGT00940000155982.e.b #33 ENSGT00440000033827 #36 ENSGT00940000155443.d ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.a #22 ENSGT00940000156512.b.b ENSGT00940000163460.a.a.b ENSGT00940000155699.a.a ENSGT00940000167539 ENSGT00390000001793 ENSGT00940000156714.b ENSGT00390000007441 ENSGT01030000234667.b.f.a ENSGT00950000182772.A.a.b.`b.b.a ENSGT00940000163655.b ENSGT01030000234517.H.a ##23 ENSGT00950000183136.a.b ENSGT00390000013955 ENSGT00940000155144.m ENSGT00940000163503.A.a.b Japanese Medaka HdrR MODERN SPECIES 16 ENSORLG00000027051 ENSORLG00000018095 ENSORLG00000023747 ENSORLG00000018100 klf11a (ENSORLG00000018102) #33 ENSORLG00000018105 #36 ADAM17 (ENSORLG00000018108) ndufaf7 (ENSORLG00000018112) ENSORLG00000018118 ENSORLG00000023173 ENSORLG00000021972 ENSORLG00000029165 rps7 (ENSORLG00000018123) rnaseh1 (ENSORLG00000018127) myt1la (ENSORLG00000018130) ENSORLG00000018132 #22 hivep2a (ENSORLG00000018133) ENSORLG00000026593 ENSORLG00000023593 cpsf3 (ENSORLG00000018854) ENSORLG00000018136 allc (ENSORLG00000018141) kidins220b (ENSORLG00000018143) ENSORLG00000018147 ENSORLG00000018150 ccr6a (ENSORLG00000026698) ENSORLG00000028187 ENSORLG00000025956 ENSORLG00000029120 cdc42bpb (ENSORLG00000018157) ##23 ENSORLG00000018161 Chinese medaka MODERN SPECIES 4572 ENSOSIG00000014116 #22 Percomorphaceae_B ANCESTRAL SPECIES 18 ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.b.b.b ENSGT00930000151352 ENSGT00390000012703.a ENSGT00940000157391 Ovalentaria ANCESTRAL SPECIES 19 ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.b.b.b.j ENSGT00930000151352 ENSGT00390000012703.a ENSGT00940000157391 Atherinomorphae ANCESTRAL SPECIES 89 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 Cyprinodontiformes ANCESTRAL SPECIES 14 ENSGT00550000074931 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00390000010349.a.a ENSGT00940000155720.c.a ENSGT00940000163503.A.a.b ENSGT00930000151053 ENSGT00940000159462.a.b ENSGT00510000047895 ENSGT00940000155490.a.c.b ENSGT00940000155490.a.c.a ENSGT00390000017610.b ENSGT01020000234387 ENSGT00390000007473 Aplocheiloidei ANCESTRAL SPECIES 140 ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000163429.C ENSGT00390000001588 ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00390000010349.a.a ENSGT00940000155720.c.a ENSGT00940000163503.A.a.b ENSGT00930000151053 ENSGT00940000159462.a.b ENSGT00510000047895 ENSGT00940000155490.a.c.b ENSGT00940000155490.a.c.a ENSGT01030000234834 ENSGT00390000017610.b ENSGT01020000234387 ENSGT00390000007473 Turquoise killifish MODERN SPECIES 1613 TAF1B (ENSNFUG00015003677) #36 KLF11A (ENSNFUG00015003683) #33 RRM2 (ENSNFUG00015003694) #32 LGALS8 (ENSNFUG00015003716) Nfu_g_1_018818 (ENSNFUG00015003744) #32 zdhhc14 (ENSNFUG00015003806) TMEM242 (ENSNFUG00015003813) CLDN20 (ENSNFUG00015003823) ENSNFUG00015003827 E2F6 (ENSNFUG00015003832) #22 ENSNFUG00015003838 GPR126 (ENSNFUG00015003854) VTA1 (ENSNFUG00015003883) gje1a (ENSNFUG00015003894) NMBR (ENSNFUG00015003896) E2F6 (ENSNFUG00015003897) #22 ENSNFUG00015003899 ENSNFUG00015003903 BTBD6B (ENSNFUG00015003905) ENSNFUG00015003907 ENSNFUG00015003925 xrcc3 (ENSNFUG00015003970) SERPINA10A (ENSNFUG00015003977) PPP4R4 (ENSNFUG00015003993) ASB2 (ENSNFUG00015004006) ENSNFUG00015004011 UBR7 (ENSNFUG00015004019) ENSNFUG00015004026 tmem251 (ENSNFUG00015004029) tmem30ab (ENSNFUG00015004034) FILIP1 (ENSNFUG00015004042) Mangrove rivulus MODERN SPECIES 407 rps7 (ENSKMAG00000001069) ENSKMAG00000001177 ndufaf7 (ENSKMAG00000001203) ENSKMAG00000001210 cnksr3 (ENSKMAG00000001251) cebpz (ENSKMAG00000001280) CEBPZOS (ENSKMAG00000001358) rnaseh1 (ENSKMAG00000001373) myt1la (ENSKMAG00000001394) ENSKMAG00000001509 #22 brf1b (ENSKMAG00000001569) btbd6b (ENSKMAG00000001664) xrcc3 (ENSKMAG00000001686) ENSKMAG00000001706 ENSKMAG00000001768 ENSKMAG00000001837 ENSKMAG00000001875 ASB2 (ENSKMAG00000001958) ENSKMAG00000001971 ubr7 (ENSKMAG00000001982) tmem251 (ENSKMAG00000002002) Cyprinodontoidei ANCESTRAL SPECIES 32 ENSGT00550000074931 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00390000010349.a.a ENSGT00940000155720.c.a ENSGT00940000163503.A.a.b ENSGT00930000151053 ENSGT00940000159462.a.b ENSGT00510000047895 ENSGT00940000155490.a.c.b ENSGT00940000155490.a.c.a ENSGT00390000017610.b ENSGT01020000234387 ENSGT00390000007473 ENSGT00530000063775.a.b ENSGT00950000182856.a.b.b ENSGT00940000173663 ENSGT00940000153511.b.r Poeciliinae ANCESTRAL SPECIES 44 ENSGT00550000074931 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00390000006395 ENSGT00500000045333 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000155720.c.a ENSGT00390000010349.a.a ENSGT00930000151053 ENSGT00940000159462.a.b ENSGT00510000047895 ENSGT00940000155490.a.c.b ENSGT00940000155490.a.c.a ENSGT00390000017610.b ENSGT00390000007473 ENSGT00530000063775.a.b ENSGT00950000182856.a.b.b ENSGT00940000156078.d ENSGT00530000063503.a.b.g.a.e ENSGT00530000063503.a.b.g.a.f ENSGT01010000222287.B.b.a.b.b.a Poecilia ANCESTRAL SPECIES 68 ENSGT00550000074931 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000155720.c.a ENSGT00390000010349.a.a ENSGT00930000151053 ENSGT00940000159462.a.b ENSGT00510000047895 ENSGT00940000155490.a.c.b ENSGT00940000155490.a.c.a ENSGT00390000017610.b ENSGT00390000007473 ENSGT00530000063775.a.b ENSGT00940000173663 ENSGT00950000182856.a.b.b ENSGT00940000156078.d ENSGT00530000063503.a.b.g.a.e ENSGT00530000063503.a.b.g.a.f NAME_6 ANCESTRAL SPECIES 149 ENSGT00550000074931 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000163429.C ENSGT00950000183024.a.a.b.r ENSGT00390000001588 ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000155720.c.a ENSGT00390000010349.a.a ENSGT00930000151053 ENSGT00940000159462.a.b ENSGT00510000047895 ENSGT00940000155490.a.c.b ENSGT00940000155490.a.c.a ENSGT00390000017610.b ENSGT00390000007473 ENSGT00530000063775.a.b ENSGT00950000182856.a.b.b ENSGT00940000156078.d ENSGT00530000063503.a.b.g.a.e ENSGT00530000063503.a.b.g.a.f ENSGT01010000222287.B.b.a.b.b.a Sailfin molly MODERN SPECIES 1910 ENSPLAG00000014956 myt1la (ENSPLAG00000015001) ENSPLAG00000015024 #22 btbd6b (ENSPLAG00000015034) brf1b (ENSPLAG00000015070) xrcc3 (ENSPLAG00000015079) ENSPLAG00000015102 ENSPLAG00000015116 ENSPLAG00000015122 ENSPLAG00000015171 ASB2 (ENSPLAG00000015320) Amazon molly MODERN SPECIES 729 COL12A1 (ENSPFOG00000006502) CD109 (ENSPFOG00000005419) naa20 (ENSPFOG00000005287) crnkl1 (ENSPFOG00000005102) CFAP61 (ENSPFOG00000004686) ENSPFOG00000004659 xrn2 (ENSPFOG00000004182) nkx2.4b (ENSPFOG00000004150) cebpz (ENSPFOG00000003831) cnksr3 (ENSPFOG00000003696) ENSPFOG00000003177 ndufaf7 (ENSPFOG00000002988) rps7 (ENSPFOG00000002935) rnaseh1 (ENSPFOG00000002841) myt1la (ENSPFOG00000002613) ENSPFOG00000002604 #22 btbd6b (ENSPFOG00000002547) brf1b (ENSPFOG00000002266) xrcc3 (ENSPFOG00000002199) ENSPFOG00000002149 ENSPFOG00000001786 Guppy MODERN SPECIES 452 naa20 (ENSPREG00000012682) crnkl1 (ENSPREG00000012615) ENSPREG00000012580 nkx2.4b (ENSPREG00000012541) xrn2 (ENSPREG00000012452) ENSPREG00000012420 ENSPREG00000012406 cebpz (ENSPREG00000012387) ENSPREG00000012371 cnksr3 (ENSPREG00000012330) ENSPREG00000012298 ndufaf7 (ENSPREG00000012262) rps7 (ENSPREG00000012210) rnaseh1 (ENSPREG00000012197) myt1la (ENSPREG00000012138) ENSPREG00000012111 #22 btbd6b (ENSPREG00000012104) brf1b (ENSPREG00000012091) xrcc3 (ENSPREG00000012063) ENSPREG00000012017 ENSPREG00000011971 ENSPREG00000011931 ASB2 (ENSPREG00000011881) ubr7 (ENSPREG00000011862) tmem251 (ENSPREG00000011842) NT5E (ENSPREG00000011829) ENSPREG00000011819 myo6a (ENSPREG00000011785) ENSPREG00000011775 ENSPREG00000011746 ENSPREG00000011722 Platyfish MODERN SPECIES 6 ENSXMAG00000029303 CFAP61 (ENSXMAG00000006876) ENSXMAG00000000240 ENSXMAG00000025623 xrn2 (ENSXMAG00000000242) nkx2.4b (ENSXMAG00000007492) ENSXMAG00000007495 cebpz (ENSXMAG00000007499) ENSXMAG00000021276 cnksr3 (ENSXMAG00000007512) ENSXMAG00000007517 ndufaf7 (ENSXMAG00000007530) rps7 (ENSXMAG00000002346) rnaseh1 (ENSXMAG00000002357) myt1la (ENSXMAG00000002367) ENSXMAG00000002384 #22 brf1b (ENSXMAG00000002387) btbd6b (ENSXMAG00000007533) xrcc3 (ENSXMAG00000007538) ENSXMAG00000007544 ENSXMAG00000007555 ENSXMAG00000007562 ASB2 (ENSXMAG00000007567) ubr7 (ENSXMAG00000007570) tmem251 (ENSXMAG00000019709) NT5E (ENSXMAG00000007577) snx14 (ENSXMAG00000007584) myo6a (ENSXMAG00000007610) ENSXMAG00000025175 ENSXMAG00000022395 HTR1B (ENSXMAG00000019710) NAME_4 ANCESTRAL SPECIES 122 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00390000010349.a.a ENSGT00940000155720.c.a ENSGT00940000163503.A.a.b ENSGT00930000151053 ENSGT00940000159462.a.b ENSGT00510000047895 ENSGT00940000155490.a.c.b ENSGT00940000155490.a.c.a ENSGT00390000017610.b ENSGT01020000234387 ENSGT00390000007473 ENSGT00530000063775.a.b ENSGT00950000182856.a.b.b ENSGT00940000173663 ENSGT00940000153511.b.r Mummichog MODERN SPECIES 2330 crnkl1 (ENSFHEG00000013163) CFAP61 (ENSFHEG00000013085) insm1a (ENSFHEG00000013057) ENSFHEG00000013046 xrn2 (ENSFHEG00000013039) ENSFHEG00000012945 nkx2.4b (ENSFHEG00000012908) ENSFHEG00000012896 cebpz (ENSFHEG00000012867) ENSFHEG00000012798 cnksr3 (ENSFHEG00000012795) ENSFHEG00000012788 ndufaf7 (ENSFHEG00000012639) ENSFHEG00000012632 ENSFHEG00000000278 ENSFHEG00000012605 #22 brf1b (ENSFHEG00000012597) btbd6b (ENSFHEG00000012586) ENSFHEG00000012495 xrcc3 (ENSFHEG00000012432) serpina10a (ENSFHEG00000012425) ENSFHEG00000012407 ENSFHEG00000012397 ASB2 (ENSFHEG00000012368) ubr7 (ENSFHEG00000012360) tmem251 (ENSFHEG00000012319) NT5E (ENSFHEG00000012309) snx14 (ENSFHEG00000012278) ENSFHEG00000012241 syncrip (ENSFHEG00000012229) ENSFHEG00000012164 Sheepshead minnow MODERN SPECIES 862 ENSCVAG00000019011 xrn2 (ENSCVAG00000018999) NKX2-4 (ENSCVAG00000018814) ENSCVAG00000018730 rnaseh1 (ENSCVAG00000018717) rps7 (ENSCVAG00000018688) ndufaf7 (ENSCVAG00000018662) ENSCVAG00000018649 cnksr3 (ENSCVAG00000018554) cebpz (ENSCVAG00000018541) myt1la (ENSCVAG00000018509) e2f6 (ENSCVAG00000018325) #22 btbd6b (ENSCVAG00000000477) ENSCVAG00000018237 ENSCVAG00000018214 ENSCVAG00000018186 xrcc3 (ENSCVAG00000018177) PPP4R4 (ENSCVAG00000018121) ASB2 (ENSCVAG00000018062) ASB2 (ENSCVAG00000018021) Ovalentaria_B ANCESTRAL SPECIES 17 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.b.b.j ENSGT00930000151352 ENSGT00390000012703.a ENSGT00940000157391 ENSGT00940000158182 Pomacentridae ANCESTRAL SPECIES 178 ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 Pomacentridae_A ANCESTRAL SPECIES 192 ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 Amphiprion ANCESTRAL SPECIES 14 ENSGT00940000156713.m ENSGT00940000158683.a.a.a.b ENSGT00940000171286 ENSGT00940000158298 ENSGT00390000014679.d.b ENSGT00940000158182 ENSGT00940000157391 ENSGT00390000012703.a ENSGT00930000151352 ENSGT00940000162649.f.a.b.a.a.a.b.b.b.j ENSGT00940000154596.b.l.a ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000178942 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 Clown anemonefish MODERN SPECIES 1412 e2f6 (ENSAOCG00000010093) #22 utp11 (ENSAOCG00000010085) FHL3 (ENSAOCG00000010065) Orange clownfish MODERN SPECIES 2 ENSAPEG00000013560 btbd9 (ENSAPEG00000013591) ZFAND3 (ENSAPEG00000013633) ENSAPEG00000013642 galnt14 (ENSAPEG00000013655) angel2 (ENSAPEG00000013705) VASH2 (ENSAPEG00000013745) ENSAPEG00000013804 ENSAPEG00000013821 ENSAPEG00000013861 ENSAPEG00000013890 ENSAPEG00000013942 rps7 (ENSAPEG00000014054) rnaseh1 (ENSAPEG00000014104) myt1la (ENSAPEG00000014115) e2f6 (ENSAPEG00000014178) #22 hivep2a (ENSAPEG00000014193) AIG1 (ENSAPEG00000014218) ENSAPEG00000014234 pex3 (ENSAPEG00000014259) atf3 (ENSAPEG00000014306) ENSAPEG00000014363 nsl1 (ENSAPEG00000014389) tatdn3 (ENSAPEG00000014404) ENSAPEG00000014439 flvcr1 (ENSAPEG00000014446) ENSAPEG00000014492 cnksr3 (ENSAPEG00000014514) PRKD3 (ENSAPEG00000014535) ndufaf7 (ENSAPEG00000014630) cebpz (ENSAPEG00000014644) Spiny chromis MODERN SPECIES 12 ENSAPOG00000014714 ENSAPOG00000014729 ipcef1 (ENSAPOG00000014742) rps7 (ENSAPOG00000014789) rnaseh1 (ENSAPOG00000000412) myt1la (ENSAPOG00000014985) e2f6 (ENSAPOG00000015005) #22 hivep2a (ENSAPOG00000015019) ENSAPOG00000015132 eda (ENSAPOG00000015148) ENSAPOG00000015206 ENSAPOG00000015209 ENSAPOG00000015223 GJB1 (ENSAPOG00000015270) gja2 (ENSAPOG00000015281) vma21 (ENSAPOG00000015302) mtnr1c (ENSAPOG00000015324) neurl1b (ENSAPOG00000015369) dusp1 (ENSAPOG00000015390) ergic1 (ENSAPOG00000015475) flt4 (ENSAPOG00000015895) trim105 (ENSAPOG00000015923) Bicolor damselfish MODERN SPECIES 1678 rps7 (ENSSPAG00000009304) rnaseh1 (ENSSPAG00000009353) myt1la (ENSSPAG00000009369) e2f6 (ENSSPAG00000009418) #22 Cichlidae ANCESTRAL SPECIES 12 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.b ENSGT00390000012703.a ENSGT00940000157391 ENSGT00940000158182 ENSGT00390000014679.d.b Pseudocrenilabrinae ANCESTRAL SPECIES 6 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439.g ENSGT01080000257598 ENSGT00970000193439.h ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.b ENSGT00390000012703.a Pseudocrenilabrinae_A ANCESTRAL SPECIES 3 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT01080000257598 ENSGT00970000193439.h ENSGT00940000178407 ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.a.a.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.a.a.b Haplochromini ANCESTRAL SPECIES 13 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT01080000257598 ENSGT00970000193439.h ENSGT00940000162649.f.a.b.a.a.a.b.b.a.e.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.b.b.b ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.b.a Burton s mouthbrooder MODERN SPECIES 381 xrn2 (ENSHBUG00000005077) NKX2-4 (ENSHBUG00000004995) nkx2.2b (ENSHBUG00000004988) ENSHBUG00000004973 ENSHBUG00000004966 FOXA2 (ENSHBUG00000004947) CEBPZOS (ENSHBUG00000004938) cebpz (ENSHBUG00000004917) ndufaf7 (ENSHBUG00000004893) PRKD3 (ENSHBUG00000004832) cnksr3 (ENSHBUG00000004741) ENSHBUG00000004724 rps7 (ENSHBUG00000004713) rnaseh1 (ENSHBUG00000004666) myt1la (ENSHBUG00000004630) e2f6 (ENSHBUG00000004495) #22 hivep2a (ENSHBUG00000004475) AIG1 (ENSHBUG00000004448) ENSHBUG00000004408 pex3 (ENSHBUG00000004370) atf3 (ENSHBUG00000004289) batf3 (ENSHBUG00000004216) nsl1 (ENSHBUG00000004208) tatdn3 (ENSHBUG00000004196) ENSHBUG00000004175 flvcr1 (ENSHBUG00000004163) ENSHBUG00000004133 ENSHBUG00000004121 ENSHBUG00000004107 ENSHBUG00000004093 ENSHBUG00000004088 Haplochromini_A ANCESTRAL SPECIES 11 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT01080000257598 ENSGT00970000193439.h ENSGT00940000162649.f.a.b.a.a.a.b.b.a.e.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.b.b.b ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.b.a P. nyererei MODERN SPECIES 343 ENSPNYG00000001923 xrn2 (ENSPNYG00000001765) nkx2.4b (ENSPNYG00000001669) nkx2.2b (ENSPNYG00000001616) ENSPNYG00000001573 FOXA2 (ENSPNYG00000001551) CEBPZOS (ENSPNYG00000001546) cebpz (ENSPNYG00000001483) ndufaf7 (ENSPNYG00000001451) PRKD3 (ENSPNYG00000001394) cnksr3 (ENSPNYG00000001359) ENSPNYG00000001347 rps7 (ENSPNYG00000001303) rnaseh1 (ENSPNYG00000001292) myt1la (ENSPNYG00000001234) e2f6 (ENSPNYG00000001219) #22 hivep2a (ENSPNYG00000001204) AIG1 (ENSPNYG00000001169) ENSPNYG00000001154 pex3 (ENSPNYG00000001113) atf3 (ENSPNYG00000001031) batf3 (ENSPNYG00000001018) nsl1 (ENSPNYG00000001009) tatdn3 (ENSPNYG00000000982) ENSPNYG00000000966 flvcr1 (ENSPNYG00000000899) ENSPNYG00000000879 ENSPNYG00000000865 ENSPNYG00000000843 ENSPNYG00000000795 ENSPNYG00000000780 Haplochromini_B ANCESTRAL SPECIES 64 ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT01080000257598 ENSGT00970000193439.h ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.a.a.b ENSGT00940000162649.f.a.b.a.a.a.b.b.a.e.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b.i.b.b.b Zebra mbuna MODERN SPECIES 1097 NT5E (ENSMZEG00005013226) chp1 (ENSMZEG00005013220) ENSMZEG00005013202 ENSMZEG00005013195 lrp11 (ENSMZEG00005013187) FOXA2 (ENSMZEG00005013175) CEBPZOS (ENSMZEG00005013169) cebpz (ENSMZEG00005013159) ndufaf7 (ENSMZEG00005013145) PRKD3 (ENSMZEG00005013100) cnksr3 (ENSMZEG00005013078) ENSMZEG00005013072 rps7 (ENSMZEG00005013039) rnaseh1 (ENSMZEG00005013006) myt1la (ENSMZEG00005012992) e2f6 (ENSMZEG00005012977) #22 ENSMZEG00005012968 hivep2a (ENSMZEG00005012960) ENSMZEG00005012950 AIG1 (ENSMZEG00005012935) ENSMZEG00005012919 pex3 (ENSMZEG00005012886) atf3 (ENSMZEG00005012876) batf3 (ENSMZEG00005012871) nsl1 (ENSMZEG00005012857) tatdn3 (ENSMZEG00005012841) ENSMZEG00005012830 flvcr1 (ENSMZEG00005012819) ENSMZEG00005012806 ENSMZEG00005012797 ENSMZEG00005012785 Lyretail cichlid MODERN SPECIES 318 ENSNBRG00000008008 xrn2 (ENSNBRG00000008062) NKX2-4 (ENSNBRG00000008244) nkx2.2b (ENSNBRG00000008315) ENSNBRG00000008357 ENSNBRG00000008377 ndufaf7 (ENSNBRG00000008402) FOXA2 (ENSNBRG00000008439) cebpz (ENSNBRG00000008466) CEBPZOS (ENSNBRG00000008542) PRKD3 (ENSNBRG00000008562) cnksr3 (ENSNBRG00000008617) ENSNBRG00000008655 rnaseh1 (ENSNBRG00000008739) myt1la (ENSNBRG00000008767) e2f6 (ENSNBRG00000008835) #22 hivep2a (ENSNBRG00000008887) AIG1 (ENSNBRG00000008933) ENSNBRG00000008959 pex3 (ENSNBRG00000008992) atf3 (ENSNBRG00000009042) batf3 (ENSNBRG00000009061) nsl1 (ENSNBRG00000009091) tatdn3 (ENSNBRG00000009113) ENSNBRG00000009147 flvcr1 (ENSNBRG00000009165) ENSNBRG00000009190 ENSNBRG00000009200 ENSNBRG00000009226 ENSNBRG00000009333 ENSNBRG00000009352 Nile tilapia MODERN SPECIES 6 xrn2 (ENSONIG00000018720) NKX2-4 (ENSONIG00000018724) nkx2.2b (ENSONIG00000018719) ENSONIG00000018717 ENSONIG00000029824 FOXA2 (ENSONIG00000018714) CEBPZOS (ENSONIG00000042051) cebpz (ENSONIG00000018713) ndufaf7 (ENSONIG00000018707) PRKD3 (ENSONIG00000018702) cnksr3 (ENSONIG00000018699) ENSONIG00000032626 rps7 (ENSONIG00000018698) rnaseh1 (ENSONIG00000018697) myt1la (ENSONIG00000018694) e2f6 (ENSONIG00000018693) #22 hivep2a (ENSONIG00000018691) ENSONIG00000037017 pex3 (ENSONIG00000038746) atf3 (ENSONIG00000041194) batf3 (ENSONIG00000035818) nsl1 (ENSONIG00000028908) tatdn3 (ENSONIG00000018685) flvcr1 (ENSONIG00000018683) ENSONIG00000039369 ENSONIG00000031478 ENSONIG00000041955 ENSONIG00000034941 ENSONIG00000018682 ENSONIG00000018668 ENSONIG00000018666 Midas cichlid MODERN SPECIES 275 ENSACIG00000015159 xrn2 (ENSACIG00000015047) NKX2-4 (ENSACIG00000014955) nkx2.2b (ENSACIG00000014940) ENSACIG00000014922 ENSACIG00000014913 FOXA2 (ENSACIG00000014897) CEBPZOS (ENSACIG00000014887) cebpz (ENSACIG00000014854) ndufaf7 (ENSACIG00000014817) PRKD3 (ENSACIG00000014766) cnksr3 (ENSACIG00000014733) rps7 (ENSACIG00000014684) rnaseh1 (ENSACIG00000014666) myt1la (ENSACIG00000014624) e2f6 (ENSACIG00000014600) #22 PLEKHF1 (ENSACIG00000014594) Percomorphaceae_C ANCESTRAL SPECIES 19 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.b.b.b ENSGT00930000151352 ENSGT00390000012703.a ENSGT00940000157391 Percomorphaceae_D ANCESTRAL SPECIES 18 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.a ENSGT00930000151352 ENSGT00390000012703.a Anabantaria ANCESTRAL SPECIES 24 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00390000000280 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00930000151352 ENSGT00390000012703.a ENSGT00940000157391 ENSGT00940000158182 Zig-zag eel MODERN SPECIES 16 xrn2 (ENSMAMG00000008633) ENSMAMG00000008594 nkx2.2b (ENSMAMG00000019854) ENSMAMG00000019851 ENSMAMG00000019846 CEBPZOS (ENSMAMG00000019833) CEBPZ (ENSMAMG00000019826) NDUFAF7 (ENSMAMG00000019800) PRKD3 (ENSMAMG00000019782) ENSMAMG00000026833 ENSMAMG00000019770 ENSMAMG00000025934 rps7 (ENSMAMG00000019738) ENSMAMG00000019725 myt1la (ENSMAMG00000019692) ENSMAMG00000019684 #22 hivep2a (ENSMAMG00000019675) ENSMAMG00000019668 adat2 (ENSMAMG00000019656) pex3 (ENSMAMG00000019640) atf3 (ENSMAMG00000019624) nsl1 (ENSMAMG00000026103) tatdn3 (ENSMAMG00000019616) flvcr1 (ENSMAMG00000019610) ENSMAMG00000027093 ENSMAMG00000019539 ENSMAMG00000028389 ENSMAMG00000019504 ENSMAMG00000019491 ENSMAMG00000019475 ENSMAMG00000019466 Carangaria ANCESTRAL SPECIES 18 ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000177839 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00930000151352 ENSGT00390000012703.a ENSGT00940000157391 Pleuronectoidei ANCESTRAL SPECIES 11 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000166323 ENSGT00940000155999.e.b ENSGT00390000006395 ENSGT00940000177839 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00390000000280 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.a ENSGT00390000012703.a ENSGT00940000157391 ENSGT00940000158182 ENSGT00390000014679.d.b ENSGT00940000158298 Turbot MODERN SPECIES 12 naa20 (ENSSMAG00000007953) crnkl1 (ENSSMAG00000007933) CFAP61 (ENSSMAG00000007892) ENSSMAG00000030870 nkx2.4b (ENSSMAG00000007829) ENSSMAG00000030883 xrn2 (ENSSMAG00000007834) ENSSMAG00000007814 CEBPZ (ENSSMAG00000007770) ENSSMAG00000007736 PRKD3 (ENSSMAG00000007683) ENSSMAG00000007652 rps7 (ENSSMAG00000007610) ENSSMAG00000007586 myt1la (ENSSMAG00000007419) ENSSMAG00000035695 #22 hivep2a (ENSSMAG00000007354) ENSSMAG00000024909 ENSSMAG00000007309 pex3 (ENSSMAG00000007264) atf3 (ENSSMAG00000036614) batf3 (ENSSMAG00000007225) nsl1 (ENSSMAG00000007218) flvcr1 (ENSSMAG00000007206) ENSSMAG00000025900 ENSSMAG00000025610 ENSSMAG00000007151 ENSSMAG00000007142 ENSSMAG00000029179 ENSSMAG00000007128 VASH2 (ENSSMAG00000007088) Carangaria_A ANCESTRAL SPECIES 35 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000177839 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122.d ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00930000151352 ENSGT00390000012703.a ENSGT00940000157391 Barramundi perch DUPLICATION Barramundi perch MODERN SPECIES 1065 ENSLCAG00010001628 #22 Barramundi perch MODERN SPECIES 528 ENSLCAG00010011116 ENSLCAG00010011117 ENSLCAG00010011120 ENSLCAG00010011121 ENSLCAG00010011122 CEBPZOS (ENSLCAG00010011123) cebpz (ENSLCAG00010011124) ndufaf7 (ENSLCAG00010011127) PRKD3 (ENSLCAG00010011156) cnksr3 (ENSLCAG00010011227) rps7 (ENSLCAG00010011234) ENSLCAG00010011256 rnaseh1 (ENSLCAG00010011278) myt1la (ENSLCAG00010011320) ENSLCAG00010011330 #22 ENSLCAG00010011336 Seriola ANCESTRAL SPECIES 4 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00940000177839 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122.d ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.a.c.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.b.a.c.a ENSGT00940000162649.f.a.b.a.a.a.b.a.d ENSGT00930000151352 ENSGT00390000012703.a Greater amberjack MODERN SPECIES 105 cnksr3 (ENSSDUG00000008160) rps7 (ENSSDUG00000008178) rnaseh1 (ENSSDUG00000008217) myt1la (ENSSDUG00000008247) e2f6 (ENSSDUG00000008276) #22 hivep2a (ENSSDUG00000008293) AIG1 (ENSSDUG00000008322) ENSSDUG00000008357 pex3 (ENSSDUG00000008383) atf3 (ENSSDUG00000008425) nsl1 (ENSSDUG00000008441) tatdn3 (ENSSDUG00000008453) ENSSDUG00000008464 flvcr1 (ENSSDUG00000008473) ENSSDUG00000008573 ENSSDUG00000010217 ENSSDUG00000010733 ENSSDUG00000013091 ENSSDUG00000013718 VASH2 (ENSSDUG00000014934) Yellowtail amberjack MODERN SPECIES 2766 rnaseh1 (ENSSLDG00000000442) myt1la (ENSSLDG00000000544) e2f6 (ENSSLDG00000000653) #22 Eupercaria ANCESTRAL SPECIES 16 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.a ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b Tetraodontidae ANCESTRAL SPECIES 36 ENSGT00550000075046 ENSGT00550000074931 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00390000001374 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000157012.l ENSGT00940000161252.h ENSGT00390000007473 ENSGT00940000176260 ENSGT00390000017610.b ENSGT00940000155490.a.c.a Tetraodon MODERN SPECIES 5 COX7A2 (ENSTNIG00000010705) COL12A1 (ENSTNIG00000010706) CD109 (ENSTNIG00000010707) ENSTNIG00000010708 naa20 (ENSTNIG00000010709) crnkl1 (ENSTNIG00000010710) CFAP61 (ENSTNIG00000010711) insm1a (ENSTNIG00000001062) xrn2 (ENSTNIG00000010712) nkx2.4b (ENSTNIG00000010713) NKX2-8 (ENSTNIG00000010813) rps7 (ENSTNIG00000010714) rnaseh1 (ENSTNIG00000010715) ENSTNIG00000000215 myt1la (ENSTNIG00000010716) ENSTNIG00000010717 #22 hivep2a (ENSTNIG00000010718) AIG1 (ENSTNIG00000003889) ENSTNIG00000003888 pex3 (ENSTNIG00000003887) tmem134 (ENSTNIG00000019662) atf3 (ENSTNIG00000002524) nsl1 (ENSTNIG00000002523) flvcr1 (ENSTNIG00000002522) ENSTNIG00000002521 ENSTNIG00000002520 ENSTNIG00000002519 ENSTNIG00000002518 ENSTNIG00000002517 ubr7 (ENSTNIG00000002516) ENSTNIG00000002515 Fugu MODERN SPECIES 7 ENSTRUG00000026779 ENSTRUG00000032230 xrn2 (ENSTRUG00000015489) NKX2-4 (ENSTRUG00000024656) ENSTRUG00000015566 FOXA2 (ENSTRUG00000015568) CEBPZOS (ENSTRUG00000024899) cebpz (ENSTRUG00000015584) ndufaf7 (ENSTRUG00000015621) PRKD3 (ENSTRUG00000015635) cnksr3 (ENSTRUG00000015727) rps7 (ENSTRUG00000015750) rnaseh1 (ENSTRUG00000015774) ENSTRUG00000033266 myt1la (ENSTRUG00000015790) e2f6 (ENSTRUG00000015884) #22 hivep2a (ENSTRUG00000015889) AIG1 (ENSTRUG00000015928) ENSTRUG00000015940 pex3 (ENSTRUG00000015942) atf3 (ENSTRUG00000026789) nsl1 (ENSTRUG00000015986) flvcr1 (ENSTRUG00000029585) atf3 (ENSTRUG00000030498) ENSTRUG00000028187 flvcr1 (ENSTRUG00000020591) ENSTRUG00000016018 ENSTRUG00000031677 CLDN20 (ENSTRUG00000016082) tmem251 (ENSTRUG00000016086) ENSTRUG00000020039 Eupecaria_A ANCESTRAL SPECIES 16 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00390000018676 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b ENSGT00930000151352 ENSGT00390000012703.a Eupecaria_B ANCESTRAL SPECIES 16 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00980000199801 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.a ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b Perciformes ANCESTRAL SPECIES 14 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000178942 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00980000199801 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b ENSGT00390000012703.a Cottioidei ANCESTRAL SPECIES 46 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00390000001374 ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00390000012703.a ENSGT00940000157391 ENSGT00940000158182 ENSGT00390000014679.d.b ENSGT00940000158298 ENSGT00930000151352 Lumpfish MODERN SPECIES 16 ENSCLMG00005011782 crnkl1 (ENSCLMG00005011783) ENSCLMG00005011825 ENSCLMG00005011826 ENSCLMG00005011828 ENSCLMG00005011829 ENSCLMG00005011830 ENSCLMG00005011832 NDUFAF7 (ENSCLMG00005011833) ENSCLMG00005011839 ENSCLMG00005011843 cnksr3 (ENSCLMG00005011864) rps7 (ENSCLMG00005011865) rnaseh1 (ENSCLMG00005011874) ENSCLMG00005011876 ENSCLMG00005011877 #22 ENSCLMG00005011878 hivep2a (ENSCLMG00005011880) ENSCLMG00005011881 ENSCLMG00005011882 AIG1 (ENSCLMG00005011886) ENSCLMG00005011888 pex3 (ENSCLMG00005011902) atf3 (ENSCLMG00005011909) nsl1 (ENSCLMG00005011910) flvcr1 (ENSCLMG00005011911) ENSCLMG00005011915 ENSCLMG00005011928 ENSCLMG00005014314 VASH2 (ENSCLMG00005014954) angel2 (ENSCLMG00005014965) Stickleback MODERN SPECIES 18 naa20 (ENSGACG00000011837) crnkl1 (ENSGACG00000011852) cebpz (ENSGACG00000011855) ENSGACG00000011860 FOXA2 (ENSGACG00000011863) ENSGACG00000011866 xrn2 (ENSGACG00000011870) ENSGACG00000011882 ENSGACG00000011887 ndufaf7 (ENSGACG00000011895) ENSGACG00000011900 cnksr3 (ENSGACG00000011904) rps7 (ENSGACG00000011913) rnaseh1 (ENSGACG00000011935) myt1la (ENSGACG00000011952) ENSGACG00000011966 #22 hivep2a (ENSGACG00000011974) ENSGACG00000011984 ENSGACG00000011987 ENSGACG00000011992 pex3 (ENSGACG00000011993) atf3 (ENSGACG00000011997) nsl1 (ENSGACG00000012001) flvcr1 (ENSGACG00000012004) ENSGACG00000012010 ENSGACG00000012012 ENSGACG00000012027 ENSGACG00000012029 ENSGACG00000012031 VASH2 (ENSGACG00000012033) angel2 (ENSGACG00000012039) Perciformes_a ANCESTRAL SPECIES 15 ENSGT00390000004987 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00940000177839 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000178942 ENSGT00390000001374 ENSGT00720000108846.b ENSGT00980000199801 ENSGT01030000234625.B.c ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b ENSGT00390000012703.a ENSGT00940000157391 Channel bull blenny MODERN SPECIES 16 xrn2 (ENSCGOG00000017938) ENSCGOG00000018646 NKX2-4 (ENSCGOG00000018647) nkx2.2b (ENSCGOG00000018649) ENSCGOG00000018651 FOXA2 (ENSCGOG00000018655) cebpz (ENSCGOG00000018658) ENSCGOG00000018666 ndufaf7 (ENSCGOG00000018668) PRKD3 (ENSCGOG00000018726) ENSCGOG00000019778 cnksr3 (ENSCGOG00000019779) rps7 (ENSCGOG00000019785) rnaseh1 (ENSCGOG00000019866) myt1la (ENSCGOG00000019873) e2f6 (ENSCGOG00000019883) #22 hivep2a (ENSCGOG00000019884) ENSCGOG00000019890 ENSCGOG00000020076 ENSCGOG00000020346 ENSCGOG00000020367 ENSCGOG00000020372 ENSCGOG00000020376 ENSCGOG00000020461 ENSCGOG00000020684 VASH2 (ENSCGOG00000020686) angel2 (ENSCGOG00000020687) ZFAND3 (ENSCGOG00000020691) btbd9 (ENSCGOG00000020696) ENSCGOG00000020787 crip2l (ENSCGOG00000020792) Pike perch MODERN SPECIES 219 cnksr3 (ENSSLUG00000003410) rps7 (ENSSLUG00000003441) rnaseh1 (ENSSLUG00000003498) ENSSLUG00000003822 e2f6 (ENSSLUG00000003827) #22 ENSSLUG00000003831 hivep2a (ENSSLUG00000003839) AIG1 (ENSSLUG00000003863) ENSSLUG00000003890 ENSSLUG00000003957 ENSSLUG00000003992 pex3 (ENSSLUG00000004001) atf3 (ENSSLUG00000004009) ENSSLUG00000004012 nsl1 (ENSSLUG00000004019) tatdn3 (ENSSLUG00000004022) ENSSLUG00000004030 flvcr1 (ENSSLUG00000004037) ENSSLUG00000004093 ENSSLUG00000004243 Eupecaria_C ANCESTRAL SPECIES 16 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.a ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b ENSGT00390000012703.a Eupercaria_incertae_sedis ANCESTRAL SPECIES 11 ENSGT00940000162552.a.b ENSGT00400000024959 ENSGT00670000098098 ENSGT00940000162247.f ENSGT00940000159137.a ENSGT00940000155999.e.b ENSGT00500000045333 ENSGT00390000006395 ENSGT00390000001588 ENSGT00950000183024.a.a.b.r ENSGT00940000163429.C ENSGT00940000163429.A ENSGT00390000014122 ENSGT00390000003466 ENSGT00940000155671.y.b ENSGT00940000155734.mb.b #22 ENSGT00940000156512.b.b ENSGT00940000158696 ENSGT00940000164335 ENSGT00940000165183 ENSGT00940000156376 ENSGT00940000161120 ENSGT00390000001374 ENSGT00720000108846.b ENSGT01030000234625.B.c ENSGT00970000193439 ENSGT00940000162649.f.a.b.a.a.a.b.b.a ENSGT00940000162649.f.a.b.a.a.a.b.a ENSGT00940000162649.f.a.b.a.a.a.b.b.b ENSGT00390000012703.a ENSGT00940000157391 European seabass MODERN SPECIES 7 ENSDLAG00005013546 ENSDLAG00005013567 ENSDLAG00005013702 ENSDLAG00005013707 ENSDLAG00005034207 ENSDLAG00005013711 ENSDLAG00005026391 CEBPZOS (ENSDLAG00005027844) CEBPZ (ENSDLAG00005013735) NDUFAF7 (ENSDLAG00005013743) PRKD3 (ENSDLAG00005013799) ENSDLAG00005031142 rnaseh1 (ENSDLAG00005029864) rps7 (ENSDLAG00005031079) ENSDLAG00005014742 ENSDLAG00005015532 #22 ENSDLAG00005015573 hivep2a (ENSDLAG00005015601) ENSDLAG00005030744 ENSDLAG00005015647 pex3 (ENSDLAG00005015664) atf3 (ENSDLAG00005015761) nsl1 (ENSDLAG00005032760) flvcr1 (ENSDLAG00005032289) ENSDLAG00005015899 ENSDLAG00005004890 ENSDLAG00005008229 ENSDLAG00005033146 ENSDLAG00005026447 ENSDLAG00005015786 VASH2 (ENSDLAG00005034291) Large yellow croaker MODERN SPECIES 482 ENSLCRG00005021383 hsdl1 (ENSLCRG00005021381) gja11 (ENSLCRG00005021380) gja13.1 (ENSLCRG00005021379) gja12.1 (ENSLCRG00005021378) si:ch73-111k22.2 (ENSLCRG00005021377) ENSLCRG00005021375 ENSLCRG00005021374 ENSLCRG00005021373 ttc13 (ENSLCRG00005021367) cnksr3 (ENSLCRG00005021364) ENSLCRG00005021363 rps7 (ENSLCRG00005021357) rnaseh1 (ENSLCRG00005021356) myt1la (ENSLCRG00005021262) ENSLCRG00005021253 #22 hivep2a (ENSLCRG00005021252) AIG1 (ENSLCRG00005021249) ENSLCRG00005021248 pex3 (ENSLCRG00005021140) atf3 (ENSLCRG00005021133) batf3 (ENSLCRG00005021132) nsl1 (ENSLCRG00005021131) tatdn3 (ENSLCRG00005021130) flvcr1 (ENSLCRG00005021124) ENSLCRG00005021123 ENSLCRG00005021097 ENSLCRG00005021090 VASH2 (ENSLCRG00005021088) angel2 (ENSLCRG00005021087) galnt14 (ENSLCRG00005021075) Gilthead seabream MODERN SPECIES 14 ENSSAUG00010014388 xrn2 (ENSSAUG00010014494) NKX2-4 (ENSSAUG00010018491) nkx2.2b (ENSSAUG00010018492) ENSSAUG00010018493 FOXA2 (ENSSAUG00010018494) CEBPZOS (ENSSAUG00010018497) cebpz (ENSSAUG00010018499) ndufaf7 (ENSSAUG00010018502) PRKD3 (ENSSAUG00010018517) cnksr3 (ENSSAUG00010019004) ENSSAUG00010019005 rps7 (ENSSAUG00010019007) rnaseh1 (ENSSAUG00010019013) myt1la (ENSSAUG00010019018) e2f6 (ENSSAUG00010019046) #22 hivep2a (ENSSAUG00010019052) AIG1 (ENSSAUG00010019058) ENSSAUG00010019062 pex3 (ENSSAUG00010019068) atf3 (ENSSAUG00010019073) batf3 (ENSSAUG00010019074) nsl1 (ENSSAUG00010019075) tatdn3 (ENSSAUG00010019077) flvcr1 (ENSSAUG00010019079) ENSSAUG00010019085 ENSSAUG00010019090 ENSSAUG00010019101 VASH2 (ENSSAUG00010019109) angel2 (ENSSAUG00010019113) galnt14 (ENSSAUG00010019129) Percomorphaceae_B ANCESTRAL SPECIES ENSGT00940000155734.nb #22 Percomorphaceae_C ANCESTRAL SPECIES ENSGT00940000155734.nb #22 Percomorphaceae_D ANCESTRAL SPECIES ENSGT00940000155734.nb #22 Carangaria ANCESTRAL SPECIES ENSGT00940000155734.nb #22 Pleuronectoidei ANCESTRAL SPECIES ENSGT00940000155734.nb #22 Tongue sole MODERN SPECIES 17 flvcr1 (ENSCSEG00000005830) SENP6 (ENSCSEG00000005835) myo6a (ENSCSEG00000005843) IMPG1 (ENSCSEG00000005860) mei4 (ENSCSEG00000005867) NT5E (ENSCSEG00000005869) snx14 (ENSCSEG00000005873) ENSCSEG00000005884 syncrip (ENSCSEG00000005893) ENSCSEG00000005920 FILIP1 (ENSCSEG00000005924) NMBR (ENSCSEG00000005946) vta1 (ENSCSEG00000005950) adgrg6 (ENSCSEG00000005958) ENSCSEG00000005970 ENSCSEG00000005976 #22 CLDN20 (ENSCSEG00000005980) tmem242 (ENSCSEG00000005984) xrcc3 (ENSCSEG00000005990) ENSCSEG00000006008 ENSCSEG00000006011 vipas39 (ENSCSEG00000006015) cdc42bpb (ENSCSEG00000006023) ##23 ENSCSEG00000006035 ##23 CEP170B (ENSCSEG00000006055) spint1b (ENSCSEG00000006065) zbtb1 (ENSCSEG00000006066) myh6 (ENSCSEG00000006069) ENSCSEG00000006071 allc (ENSCSEG00000006073) ENSCSEG00000006089 Elephant shark MODERN SPECIES 1649 CMPK2 (ENSCMIG00000008524) rsad2 (ENSCMIG00000008527) rnf144aa (ENSCMIG00000008529) id2a (ENSCMIG00000008530) kidins220b (ENSCMIG00000008555) mboat2b (ENSCMIG00000008612) ENSCMIG00000008631 #22 ENSCMIG00000008632 asap2a (ENSCMIG00000008687) itgb1bp1 (ENSCMIG00000009018) cpsf3 (ENSCMIG00000009078) iah1 (ENSCMIG00000009265) adam17a (ENSCMIG00000009330) ywhaqa (ENSCMIG00000009566) ##37 ENSCMIG00000009569 #36 ENSCMIG00000009575 #35 klf11 (ENSCMIG00000009585) #33