Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00940000153886.a.a	ENSGT00940000154888	ENSGT00550000075058	ENSGT00940000162245	ENSGT01050000244869.a.b.a	ENSGT00940000163275	ENSGT00940000163058	ENSGT01080000258996	ENSGT00940000164554	ENSGT00390000003324	ENSGT00390000016277.b	ENSGT01090000260011.B	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00940000162546 #25	ENSGT00390000001141 #26	ENSGT00390000014634 #27	ENSGT00940000160978 #28	ENSGT00390000012708 #29	ENSGT00940000157841 #30	ENSGT00940000162200 #31	ENSGT00940000159567 #32	ENSGT00710000106790 #35	ENSGT00390000007438 #34	ENSGT00940000163573 #36	ENSGT00940000161681 #37	ENSGT00940000158278
Naked mole-rat female	MODERN SPECIES	11	TTBK2 (ENSHGLG00000008689) #7	ENSHGLG00000021424 #8	UBR1 (ENSHGLG00000008216) #9	TMEM62 (ENSHGLG00000009535) #10	ENSHGLG00000018093 #11	ENSHGLG00000015852 #12	ENSHGLG00000017415 #13	SPG11 (ENSHGLG00000019157) #14	ENSHGLG00000015053 #15	ENSHGLG00000014890 #16	CASC4 (ENSHGLG00000011095) #17	ENSHGLG00000033322 #18	ENSHGLG00000003344 #19	ENSHGLG00000003498 #20	MRPL52 (ENSHGLG00000045369) #21	MMP14 (ENSHGLG00000003308) #22	LRP10 (ENSHGLG00000003141) #23	REM2 (ENSHGLG00000002476) #24	RBM23 (ENSHGLG00000040941) #25	PRMT5 (ENSHGLG00000002159) #26	HAUS4 (ENSHGLG00000002077) #27	AJUBA (ENSHGLG00000004520) #28	C14orf93 (ENSHGLG00000003743) #29	PSMB5 (ENSHGLG00000003365) #30	PSMB11 (ENSHGLG00000020072) #31	CDH24 (ENSHGLG00000003051) #32	ENSHGLG00000018997 #33	C14orf119 (ENSHGLG00000011980) #34	ENSHGLG00000049606 #35	CIROP (ENSHGLG00000035340) #36	CEBPE (ENSHGLG00000011620) #37
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00940000153886.a.a	ENSGT00940000154888	ENSGT00550000075058	ENSGT00940000162245	ENSGT01050000244869.a.b.a	ENSGT00940000163275	ENSGT00940000153073.b.b.b.b.g	ENSGT00550000075201	ENSGT00940000164554	ENSGT00390000003324	ENSGT00390000016277.b	ENSGT01090000260011.B	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #26	ENSGT00390000014634 #27	ENSGT00940000160978 #28	ENSGT00390000012708 #29	ENSGT00940000157841 #30	ENSGT00940000162200 #31	ENSGT00940000159567 #32	ENSGT00710000106790 #35	ENSGT00390000007438 #34	ENSGT00940000161681 #37	ENSGT00940000158278	ENSGT00950000182893.a.b	ENSGT00940000161906
Guinea pig	MODERN SPECIES	13	TOX4 (ENSCPOG00000025504)	METTL3 (ENSCPOG00000002545)	SALL2 (ENSCPOG00000040220)	OR10G2 (ENSCPOG00000039240)	OR4E2 (ENSCPOG00000026054)	ENSCPOG00000040263	ENSCPOG00000033000	TRDC (ENSCPOG00000000844)	ENSCPOG00000034500	ENSCPOG00000031141	ABHD4 (ENSCPOG00000000850)	ENSCPOG00000032843	OXA1L (ENSCPOG00000022098) #19	SLC7A7 (ENSCPOG00000005730) #20	MRPL52 (ENSCPOG00000009474) #21	MMP14 (ENSCPOG00000024551) #22	LRP10 (ENSCPOG00000014495) #23	REM2 (ENSCPOG00000024124) #24	PRMT5 (ENSCPOG00000014038) #26	HAUS4 (ENSCPOG00000003331) #27	AJUBA (ENSCPOG00000023158) #28	C14orf93 (ENSCPOG00000014044) #29	PSMB5 (ENSCPOG00000014047) #30	PSMB11 (ENSCPOG00000014048) #31	CDH24 (ENSCPOG00000013121) #32	ACIN1 (ENSCPOG00000027234) #35	C14orf119 (ENSCPOG00000036221) #34	CEBPE (ENSCPOG00000014049) #37	SLC7A8 (ENSCPOG00000014051)	ENSCPOG00000025949	PPP1R3E (ENSCPOG00000039856)
Hystricomorpha_b	ANCESTRAL SPECIES	18							ENSGT00940000153073.b.b.b.b.g	ENSGT00550000075201	ENSGT00940000164554	ENSGT00390000003324	ENSGT00390000016277.b	ENSGT01090000260011.B	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #26	ENSGT00390000014634 #27	ENSGT00940000160978 #28	ENSGT00390000012708 #29	ENSGT00940000157841 #30	ENSGT00940000162200 #31	ENSGT00940000159567 #32	ENSGT00710000106790 #35	ENSGT00390000007438 #34	ENSGT00940000161681 #37	ENSGT00940000158278	ENSGT00950000182893.a.b	ENSGT00940000161906
Degu	MODERN SPECIES	317								ENSODEG00000001687	ENSODEG00000001700	ABHD4 (ENSODEG00000001709)	ENSODEG00000001719	ENSODEG00000018736	OXA1L (ENSODEG00000001527) #19	SLC7A7 (ENSODEG00000001562) #20	MRPL52 (ENSODEG00000001600) #21	MMP14 (ENSODEG00000001611) #22	LRP10 (ENSODEG00000001621) #23	REM2 (ENSODEG00000001644) #24	PRMT5 (ENSODEG00000001672) #26	HAUS4 (ENSODEG00000001722) #27	ENSODEG00000001742 #28	C14orf93 (ENSODEG00000001756) #29	PSMB5 (ENSODEG00000001779) #30	ENSODEG00000001783	PSMB11 (ENSODEG00000018719) #31	ENSODEG00000001803 #32	ENSODEG00000001841 #35	CEBPE (ENSODEG00000001920) #37	SLC7A8 (ENSODEG00000001928)	ENSODEG00000001949	PPP1R3E (ENSODEG00000001965)
Long-tailed chinchilla	MODERN SPECIES	116							ENSCLAG00000010144	TRDC (ENSCLAG00000010037)	ENSCLAG00000012044	DAD1 (ENSCLAG00000011874)	ABHD4 (ENSCLAG00000012500)	ENSCLAG00000009926	OXA1L (ENSCLAG00000009417) #19	SLC7A7 (ENSCLAG00000011517) #20	MRPL52 (ENSCLAG00000010931) #21	MMP14 (ENSCLAG00000009784) #22	LRP10 (ENSCLAG00000010502) #23	REM2 (ENSCLAG00000011939) #24	PRMT5 (ENSCLAG00000010579) #26	HAUS4 (ENSCLAG00000013026) #27	AJUBA (ENSCLAG00000011137) #28	C14orf93 (ENSCLAG00000010663) #29	PSMB5 (ENSCLAG00000011138) #30	PSMB11 (ENSCLAG00000010224) #31	CDH24 (ENSCLAG00000011914) #32	ACIN1 (ENSCLAG00000010588) #35	C14orf119 (ENSCLAG00000009464) #34	CEBPE (ENSCLAG00000012477) #37	SLC7A8 (ENSCLAG00000010864)	ENSCLAG00000011910	ENSCLAG00000010300