Rodentia_A ANCESTRAL SPECIES 2 ENSGT01050000244869.a.b.b ENSGT01050000244869.a.b.a ENSGT00940000163275 ENSGT00940000163058 ENSGT00940000162998.b ENSGT00940000159469.a.b.a ENSGT00940000153130.a.b.b ##14 ENSGT00940000160147.b ENSGT00390000003324 #15 ENSGT00390000016277.b #16 ENSGT00910000148211 ENSGT01090000260011.B #17 ENSGT00530000063506.B ENSGT00940000160134 #20 ENSGT00390000005763 #21 ENSGT00940000157808 #22 ENSGT00940000160783 #23 ENSGT00940000160062 #24 ENSGT00940000162546 #25 ENSGT00390000001141 #26 ENSGT00390000014634 #27 ENSGT00940000160978 #28 ENSGT00390000012708 #29 ENSGT00940000157841 #30 ENSGT00940000162200 #31 ENSGT00940000159567 #32 ENSGT00710000106790 #33 ENSGT00390000007438 #34 ENSGT00940000163573 ENSGT00940000161681 #35 ENSGT00940000158278 #36 Sciuridae ANCESTRAL SPECIES 8 ENSGT00940000161790 ENSGT00940000153130.a.b.a.a ##14 ENSGT00940000153073.b.b.b.a.f ENSGT00940000153130.a.b.a.b ##14 ENSGT00940000153130.a.a.a.c.b #14 ENSGT00940000162840.C ENSGT00940000166072 ENSGT00940000160147.b ENSGT00390000003324 #15 ENSGT00390000016277.b #16 ENSGT00910000148211 ENSGT01090000260011.B #17 ENSGT00530000063506.B ENSGT00940000160134 #20 ENSGT00390000005763.j #21 ENSGT00940000157808 #22 ENSGT00940000160783 #23 ENSGT00940000160062 #24 ENSGT00940000162546 #25 ENSGT00390000001141 #26 ENSGT00390000014634 #27 ENSGT00940000160978 #28 ENSGT00390000012708 #29 ENSGT00940000157841 #30 ENSGT00940000162200 #31 ENSGT00940000159567 #32 ENSGT00710000106790 #33 ENSGT00390000007438 #34 ENSGT00940000163573 ENSGT00940000161681 #35 ENSGT00940000158278 #36 Marmotini ANCESTRAL SPECIES 15 ENSGT00940000162840.C ENSGT00940000166072 ENSGT00940000160183.d.a ENSGT00550000075201 ENSGT01010000223901 ENSGT01080000258996 ENSGT00940000164554 ENSGT00390000003324 #15 ENSGT00390000016277.b #16 ENSGT00910000148211 ENSGT01090000260011.B.t #17 ENSGT01090000260011.B.s #18 ENSGT00530000063506.B.o ENSGT00940000160134 #20 ENSGT00390000005763.j #21 ENSGT00940000157808 #22 ENSGT00940000160783 #23 ENSGT00940000160062 #24 ENSGT00940000162546 #25 ENSGT00390000001141 #26 ENSGT00390000014634 #27 ENSGT00940000160978 #28 ENSGT00390000012708 #29 ENSGT00940000157841 #30 ENSGT00940000162200 #31 ENSGT00940000159567 #32 ENSGT00710000106790 #33 ENSGT00390000007438 #34 ENSGT00940000163573 ENSGT00940000161681 #35 ENSGT00940000158278 #36 Marmotini_b ANCESTRAL SPECIES 58 ENSGT00940000162840.C ENSGT00940000166072 ENSGT00940000160183.d.a ENSGT00550000075201 ENSGT01010000223901 ENSGT01080000258996 ENSGT00940000164554 ENSGT00390000003324 #15 ENSGT00390000016277.b #16 ENSGT01090000260011.B.t #17 ENSGT01090000260011.B.s #18 ENSGT00910000148211 ENSGT00530000063506.B.o ENSGT00940000160134 #20 ENSGT00390000005763.j #21 ENSGT00940000157808 #22 ENSGT00940000160783 #23 ENSGT00940000160062 #24 ENSGT00940000162546 #25 ENSGT00390000001141 #26 ENSGT00390000014634 #27 ENSGT00940000160978 #28 ENSGT00390000012708 #29 ENSGT00940000157841 #30 ENSGT00940000162200 #31 ENSGT00940000159567 #32 ENSGT00710000106790 #33 ENSGT00390000007438 #34 ENSGT00940000161681 #35 ENSGT00940000158278 #36 ENSGT00740000115581.e #37 Squirrel MODERN SPECIES 322 TRAV29DV5 (ENSSTOG00000025427) #14 DAD1 (ENSSTOG00000007925) #15 ABHD4 (ENSSTOG00000023335) #16 ENSSTOG00000034134 #17 ENSSTOG00000032926 #18 ENSSTOG00000003318 #19 SLC7A7 (ENSSTOG00000003328) #20 MRPL52 (ENSSTOG00000010317) #21 MMP14 (ENSSTOG00000027121) #22 LRP10 (ENSSTOG00000010323) #23 REM2 (ENSSTOG00000010340) #24 RBM23 (ENSSTOG00000010354) #25 PRMT5 (ENSSTOG00000010374) #26 HAUS4 (ENSSTOG00000020110) #27 AJUBA (ENSSTOG00000023817) #28 C14orf93 (ENSSTOG00000007124) #29 PSMB5 (ENSSTOG00000007134) #30 PSMB11 (ENSSTOG00000007142) #31 CDH24 (ENSSTOG00000007148) #32 ACIN1 (ENSSTOG00000007169) #33 C14orf119 (ENSSTOG00000021954) #34 CEBPE (ENSSTOG00000007204) #35 SLC7A8 (ENSSTOG00000007210) #36 RNF212B (ENSSTOG00000027132) #37 Arctic ground squirrel MODERN SPECIES 329 TRAV34 (ENSUPAG00010011430) ENSUPAG00010011423 ENSUPAG00010011419 ENSUPAG00010011410 TRDC (ENSUPAG00010011406) ENSUPAG00010011402 ENSUPAG00010011401 ENSUPAG00010011399 ENSUPAG00010011393 DAD1 (ENSUPAG00010011383) #15 ENSUPAG00010011367 #16 ENSUPAG00010011365 ENSUPAG00010011358 SLC7A7 (ENSUPAG00010011328) #20 MRPL52 (ENSUPAG00010011316) #21 MMP14 (ENSUPAG00010011304) #22 LRP10 (ENSUPAG00010011283) #23 RBM23 (ENSUPAG00010011269) #25 PRMT5 (ENSUPAG00010011261) #26 HAUS4 (ENSUPAG00010011240) #27 AJUBA (ENSUPAG00010011224) #28 C14orf93 (ENSUPAG00010011216) #29 PSMB5 (ENSUPAG00010011210) #30 PSMB11 (ENSUPAG00010011206) #31 CDH24 (ENSUPAG00010011199) #32 ACIN1 (ENSUPAG00010010981) #33 CEBPE (ENSUPAG00010010976) #35 C14orf119 (ENSUPAG00010010952) #34 SLC7A8 (ENSUPAG00010010946) #36 RNF212B (ENSUPAG00010010924) #37 HOMEZ (ENSUPAG00010010920) Alpin marmot MODERN SPECIES 1 ENSMMMG00000013943 TRDC (ENSMMMG00000013939) ENSMMMG00000013936 ENSMMMG00000013935 ENSMMMG00000013930 ENSMMMG00000013901 DAD1 (ENSMMMG00000013891) #15 ABHD4 (ENSMMMG00000013878) #16 ENSMMMG00000013877 ENSMMMG00000013873 #17 ENSMMMG00000013869 #18 ENSMMMG00000013866 #18 ENSMMMG00000013841 SLC7A7 (ENSMMMG00000013825) #20 MRPL52 (ENSMMMG00000013813) #21 MMP14 (ENSMMMG00000013801) #22 LRP10 (ENSMMMG00000013796) #23 REM2 (ENSMMMG00000013781) #24 RBM23 (ENSMMMG00000013775) #25 PRMT5 (ENSMMMG00000013742) #26 HAUS4 (ENSMMMG00000013733) #27 AJUBA (ENSMMMG00000013718) #28 C14orf93 (ENSMMMG00000013705) #29 PSMB5 (ENSMMMG00000013699) #30 PSMB11 (ENSMMMG00000013681) #31 CDH24 (ENSMMMG00000013665) #32 ACIN1 (ENSMMMG00000013562) #33 C14orf119 (ENSMMMG00000013557) #34 CIROP (ENSMMMG00000013535) CEBPE (ENSMMMG00000013529) #35 SLC7A8 (ENSMMMG00000013507) #36 Eurasian red squirrel MODERN SPECIES 11 TRAV36DV7 (ENSSVLG00005003757) ENSSVLG00005003749 ENSSVLG00005003739 TRDV3 (ENSSVLG00005003727) ENSSVLG00005003720 ENSSVLG00005003714 ENSSVLG00005003706 ENSSVLG00005003698 ENSSVLG00005003608 ENSSVLG00005003529 #15 ABHD4 (ENSSVLG00005003510) #16 ENSSVLG00005003497 OXA1L (ENSSVLG00005003453) SLC7A7 (ENSSVLG00005003413) #20 ENSSVLG00005003381 #21 MMP14 (ENSSVLG00005003350) #22 LRP10 (ENSSVLG00005003327) #23 REM2 (ENSSVLG00005003310) #24 RBM23 (ENSSVLG00005003194) #25 PRMT5 (ENSSVLG00005003037) #26 HAUS4 (ENSSVLG00005002983) #27 AJUBA (ENSSVLG00005002965) #28 C14orf93 (ENSSVLG00005002934) #29 ENSSVLG00005002903 #30 PSMB11 (ENSSVLG00005002893) #31 CDH24 (ENSSVLG00005002877) #32 ACIN1 (ENSSVLG00005002620) #33 C14orf119 (ENSSVLG00005002545) #34 CEBPE (ENSSVLG00005002534) #35 SLC7A8 (ENSSVLG00005002489) #36 ENSSVLG00005002458 Hystricomorpha ANCESTRAL SPECIES 15 ENSGT00940000153886.a.a ENSGT00940000154888 ENSGT00550000075058 ENSGT00940000162245 ENSGT01050000244869.a.b.a ENSGT00940000163275 ENSGT00940000163058 ENSGT01080000258996 ENSGT00940000164554 ENSGT00390000003324 #15 ENSGT00390000016277.b #16 ENSGT01090000260011.B #17 ENSGT00530000063506.B ENSGT00940000160134 #20 ENSGT00390000005763 #21 ENSGT00940000157808 #22 ENSGT00940000160783 #23 ENSGT00940000160062 #24 ENSGT00940000162546 #25 ENSGT00390000001141 #26 ENSGT00390000014634 #27 ENSGT00940000160978 #28 ENSGT00390000012708 #29 ENSGT00940000157841 #30 ENSGT00940000162200 #31 ENSGT00940000159567 #32 ENSGT00710000106790 #33 ENSGT00390000007438 #34 ENSGT00940000163573 ENSGT00940000161681 #35 ENSGT00940000158278 #36 Naked mole-rat female MODERN SPECIES 11 TTBK2 (ENSHGLG00000008689) ENSHGLG00000021424 UBR1 (ENSHGLG00000008216) TMEM62 (ENSHGLG00000009535) ENSHGLG00000018093 ENSHGLG00000015852 ENSHGLG00000017415 SPG11 (ENSHGLG00000019157) ENSHGLG00000015053 ENSHGLG00000014890 CASC4 (ENSHGLG00000011095) ENSHGLG00000033322 ENSHGLG00000003344 ENSHGLG00000003498 #20 MRPL52 (ENSHGLG00000045369) #21 MMP14 (ENSHGLG00000003308) #22 LRP10 (ENSHGLG00000003141) #23 REM2 (ENSHGLG00000002476) #24 RBM23 (ENSHGLG00000040941) #25 PRMT5 (ENSHGLG00000002159) #26 HAUS4 (ENSHGLG00000002077) #27 AJUBA (ENSHGLG00000004520) #28 C14orf93 (ENSHGLG00000003743) #29 PSMB5 (ENSHGLG00000003365) #30 PSMB11 (ENSHGLG00000020072) #31 CDH24 (ENSHGLG00000003051) #32 ENSHGLG00000018997 #33 C14orf119 (ENSHGLG00000011980) #34 ENSHGLG00000049606 #33 CIROP (ENSHGLG00000035340) CEBPE (ENSHGLG00000011620) #35 Hystricomorpha_a ANCESTRAL SPECIES 18 ENSGT00940000153886.a.a ENSGT00940000154888 ENSGT00550000075058 ENSGT00940000162245 ENSGT01050000244869.a.b.a ENSGT00940000163275 ENSGT00940000153073.b.b.b.b.g ENSGT00550000075201 ENSGT00940000164554 ENSGT00390000003324 #15 ENSGT00390000016277.b #16 ENSGT01090000260011.B #17 ENSGT00530000063506.B ENSGT00940000160134 #20 ENSGT00390000005763 #21 ENSGT00940000157808 #22 ENSGT00940000160783 #23 ENSGT00940000160062 #24 ENSGT00390000001141 #26 ENSGT00390000014634 #27 ENSGT00940000160978 #28 ENSGT00390000012708 #29 ENSGT00940000157841 #30 ENSGT00940000162200 #31 ENSGT00940000159567 #32 ENSGT00710000106790 #33 ENSGT00390000007438 #34 ENSGT00940000161681 #35 ENSGT00940000158278 #36 ENSGT00950000182893.a.b ENSGT00940000161906 Guinea pig MODERN SPECIES 13 TOX4 (ENSCPOG00000025504) METTL3 (ENSCPOG00000002545) SALL2 (ENSCPOG00000040220) OR10G2 (ENSCPOG00000039240) OR4E2 (ENSCPOG00000026054) ENSCPOG00000040263 ENSCPOG00000033000 TRDC (ENSCPOG00000000844) ENSCPOG00000034500 ENSCPOG00000031141 #15 ABHD4 (ENSCPOG00000000850) #16 ENSCPOG00000032843 #17 OXA1L (ENSCPOG00000022098) SLC7A7 (ENSCPOG00000005730) #20 MRPL52 (ENSCPOG00000009474) #21 MMP14 (ENSCPOG00000024551) #22 LRP10 (ENSCPOG00000014495) #23 REM2 (ENSCPOG00000024124) #24 PRMT5 (ENSCPOG00000014038) #26 HAUS4 (ENSCPOG00000003331) #27 AJUBA (ENSCPOG00000023158) #28 C14orf93 (ENSCPOG00000014044) #29 PSMB5 (ENSCPOG00000014047) #30 PSMB11 (ENSCPOG00000014048) #31 CDH24 (ENSCPOG00000013121) #32 ACIN1 (ENSCPOG00000027234) #33 C14orf119 (ENSCPOG00000036221) #34 CEBPE (ENSCPOG00000014049) #35 SLC7A8 (ENSCPOG00000014051) #36 ENSCPOG00000025949 PPP1R3E (ENSCPOG00000039856) Hystricomorpha_b ANCESTRAL SPECIES 18 ENSGT00940000153073.b.b.b.b.g ENSGT00550000075201 ENSGT00940000164554 ENSGT00390000003324 #15 ENSGT00390000016277.b #16 ENSGT01090000260011.B #17 ENSGT00530000063506.B ENSGT00940000160134 #20 ENSGT00390000005763 #21 ENSGT00940000157808 #22 ENSGT00940000160783 #23 ENSGT00940000160062 #24 ENSGT00390000001141 #26 ENSGT00390000014634 #27 ENSGT00940000160978 #28 ENSGT00390000012708 #29 ENSGT00940000157841 #30 ENSGT00940000162200 #31 ENSGT00940000159567 #32 ENSGT00710000106790 #33 ENSGT00390000007438 #34 ENSGT00940000161681 #35 ENSGT00940000158278 #36 ENSGT00950000182893.a.b ENSGT00940000161906 Degu MODERN SPECIES 317 ENSODEG00000001687 ENSODEG00000001700 #15 ABHD4 (ENSODEG00000001709) #16 ENSODEG00000001719 ENSODEG00000018736 #17 OXA1L (ENSODEG00000001527) SLC7A7 (ENSODEG00000001562) #20 MRPL52 (ENSODEG00000001600) #21 MMP14 (ENSODEG00000001611) #22 LRP10 (ENSODEG00000001621) #23 REM2 (ENSODEG00000001644) #24 PRMT5 (ENSODEG00000001672) #26 HAUS4 (ENSODEG00000001722) #27 ENSODEG00000001742 #28 C14orf93 (ENSODEG00000001756) #29 PSMB5 (ENSODEG00000001779) #30 ENSODEG00000001783 PSMB11 (ENSODEG00000018719) #31 ENSODEG00000001803 #32 ENSODEG00000001841 #33 CEBPE (ENSODEG00000001920) #35 SLC7A8 (ENSODEG00000001928) #36 ENSODEG00000001949 PPP1R3E (ENSODEG00000001965) Long-tailed chinchilla MODERN SPECIES 116 ENSCLAG00000010144 TRDC (ENSCLAG00000010037) ENSCLAG00000012044 DAD1 (ENSCLAG00000011874) #15 ABHD4 (ENSCLAG00000012500) #16 ENSCLAG00000009926 #17 OXA1L (ENSCLAG00000009417) SLC7A7 (ENSCLAG00000011517) #20 MRPL52 (ENSCLAG00000010931) #21 MMP14 (ENSCLAG00000009784) #22 LRP10 (ENSCLAG00000010502) #23 REM2 (ENSCLAG00000011939) #24 PRMT5 (ENSCLAG00000010579) #26 HAUS4 (ENSCLAG00000013026) #27 AJUBA (ENSCLAG00000011137) #28 C14orf93 (ENSCLAG00000010663) #29 PSMB5 (ENSCLAG00000011138) #30 PSMB11 (ENSCLAG00000010224) #31 CDH24 (ENSCLAG00000011914) #32 ACIN1 (ENSCLAG00000010588) #33 C14orf119 (ENSCLAG00000009464) #34 CEBPE (ENSCLAG00000012477) #35 SLC7A8 (ENSCLAG00000010864) #36 ENSCLAG00000011910 ENSCLAG00000010300