Mus_A	ANCESTRAL SPECIES	12	ENSGT00950000186473 #7	ENSGT00950000186517 #8	ENSGT00950000186527 #9	ENSGT00860000135743 #10	ENSGT00950000186533 #11	ENSGT00860000135941 #12	ENSGT00860000135984 #13	ENSGT00860000135636 #14	ENSGT00940000164554 #15	ENSGT00390000003324 #16	ENSGT00390000016277.b #17	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00860000136194 #32	ENSGT00950000183634 #33	ENSGT00710000106790 #34	ENSGT00390000007438 #35	ENSGT00940000163573	ENSGT00940000161681 #36
Ryukyu mouse	MODERN SPECIES	5	Traj11 (MGP_CAROLIEiJ_G0002171) #7	Traj9 (MGP_CAROLIEiJ_G0002172) #8	Traj7 (MGP_CAROLIEiJ_G0002173) #9	Traj6 (MGP_CAROLIEiJ_G0002174) #10	Traj5 (MGP_CAROLIEiJ_G0002175) #11	Traj4 (MGP_CAROLIEiJ_G0002176) #12	Traj3 (MGP_CAROLIEiJ_G0002177) #13	Traj2 (MGP_CAROLIEiJ_G0002178) #14	Trac (MGP_CAROLIEiJ_G0002120) #15	Dad1 (MGP_CAROLIEiJ_G0019249) #16	Abhd4 (MGP_CAROLIEiJ_G0019250) #17	Or6e1 (MGP_CAROLIEiJ_G0019251) #18	Oxa1l (MGP_CAROLIEiJ_G0019252) #19	Slc7a7 (MGP_CAROLIEiJ_G0019253) #20	Mrpl52 (MGP_CAROLIEiJ_G0019254) #21	Mmp14 (MGP_CAROLIEiJ_G0019255) #22	Lrp10 (MGP_CAROLIEiJ_G0019256) #23	Rem2 (MGP_CAROLIEiJ_G0019257) #24	Prmt5 (MGP_CAROLIEiJ_G0019258) #25	Haus4 (MGP_CAROLIEiJ_G0019259) #26	Ajuba (MGP_CAROLIEiJ_G0019260) #27	4931414P19Rik (MGP_CAROLIEiJ_G0019261) #28	Psmb5 (MGP_CAROLIEiJ_G0019262) #29	Psmb11 (MGP_CAROLIEiJ_G0019263) #30	Cdh24 (MGP_CAROLIEiJ_G0019264) #31	MGP_CAROLIEiJ_G0019265 #32	MGP_CAROLIEiJ_G0019266 #33	Acin1 (MGP_CAROLIEiJ_G0019267) #34	1700123O20Rik (MGP_CAROLIEiJ_G0019268) #35	Cebpe (MGP_CAROLIEiJ_G0019269) #36	Slc7a8 (MGP_CAROLIEiJ_G0019270) #37
Mus_B	ANCESTRAL SPECIES	11	ENSGT00950000186473 #7	ENSGT00950000186517 #8	ENSGT00950000186527 #9	ENSGT00860000135743 #10	ENSGT00950000186533 #11	ENSGT00860000135941 #12	ENSGT00860000135984 #13	ENSGT00860000135636 #14	ENSGT00940000164554 #15	ENSGT00390000003324 #16	ENSGT00390000016277.b #17	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00950000183634 #33	ENSGT00710000106790 #34	ENSGT00390000007438 #35	ENSGT00940000163573	ENSGT00940000161681 #36	ENSGT00940000158278 #37
Mus_C	ANCESTRAL SPECIES	20	ENSGT00950000186517 #8	ENSGT00950000186527 #9	ENSGT00860000135743 #10	ENSGT00950000186533 #11	ENSGT00860000135941 #12	ENSGT00860000135984 #13	ENSGT00860000135636 #14	ENSGT00940000164554 #15	ENSGT00390000003324 #16	ENSGT00390000016277.b #17	ENSGT00910000148211	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00950000183634 #33	ENSGT00710000106790 #34	ENSGT00390000007438 #35	ENSGT00940000163573	ENSGT00940000161681 #36	ENSGT00940000158278 #37
Steppe mouse	MODERN SPECIES	2984		ENSMSIG00000016011	ENSMSIG00000016039	ENSMSIG00000016053	ENSMSIG00000016066	Trdc (ENSMSIG00000016073)	ENSMSIG00000016075	Trac (ENSMSIG00000016077) #15	Dad1 (ENSMSIG00000016087) #16	Abhd4 (ENSMSIG00000016112) #17	ENSMSIG00000016133	Or6e1 (ENSMSIG00000016138) #18	Oxa1l (ENSMSIG00000016147) #19	Slc7a7 (ENSMSIG00000016170) #20	ENSMSIG00000016189 #21	Mmp14 (ENSMSIG00000016218) #22	Lrp10 (ENSMSIG00000016275) #23	Rem2 (ENSMSIG00000016298) #24	Prmt5 (ENSMSIG00000016312) #25	Haus4 (ENSMSIG00000016328) #26	Ajuba (ENSMSIG00000016353) #27	4931414P19Rik (ENSMSIG00000016385) #28	Psmb5 (ENSMSIG00000016401) #29	Psmb11 (ENSMSIG00000016415) #30	Cdh24 (ENSMSIG00000016419) #31	ENSMSIG00000016433 #33	Acin1 (ENSMSIG00000016452) #34	ENSMSIG00000016836 #35	Cirop (ENSMSIG00000016852)	Cebpe (ENSMSIG00000016907) #36	Slc7a8 (ENSMSIG00000016920) #37
spretus	MODERN SPECIES	5	Traj11 (MGP_SPRETEiJ_G0002300) #7	Traj9 (MGP_SPRETEiJ_G0002301) #8	Traj7 (MGP_SPRETEiJ_G0002302) #9	Traj6 (MGP_SPRETEiJ_G0002303) #10	Traj5 (MGP_SPRETEiJ_G0002304) #11	Traj4 (MGP_SPRETEiJ_G0002305) #12	Traj3 (MGP_SPRETEiJ_G0002306) #13	Traj2 (MGP_SPRETEiJ_G0002307) #14	Trac (MGP_SPRETEiJ_G0002246) #15	Dad1 (MGP_SPRETEiJ_G0020139) #16	Abhd4 (MGP_SPRETEiJ_G0020140) #17	Or6e1 (MGP_SPRETEiJ_G0020141) #18	Oxa1l (MGP_SPRETEiJ_G0020142) #19	Slc7a7 (MGP_SPRETEiJ_G0020143) #20	Mrpl52 (MGP_SPRETEiJ_G0020144) #21	Mmp14 (MGP_SPRETEiJ_G0020145) #22	Lrp10 (MGP_SPRETEiJ_G0020146) #23	Rem2 (MGP_SPRETEiJ_G0020147) #24	Prmt5 (MGP_SPRETEiJ_G0020148) #25	Haus4 (MGP_SPRETEiJ_G0020149) #26	Ajuba (MGP_SPRETEiJ_G0020150) #27	4931414P19Rik (MGP_SPRETEiJ_G0020151) #28	Psmb5 (MGP_SPRETEiJ_G0020152) #29	Psmb11 (MGP_SPRETEiJ_G0020153) #30	Cdh24 (MGP_SPRETEiJ_G0020154) #31	MGP_SPRETEiJ_G0020155 #32	MGP_SPRETEiJ_G0020156 #33	Acin1 (MGP_SPRETEiJ_G0020157) #34	1700123O20Rik (MGP_SPRETEiJ_G0020158) #35	Cebpe (MGP_SPRETEiJ_G0020159) #36	Slc7a8 (MGP_SPRETEiJ_G0020160) #37
Mouse	MODERN SPECIES	5	Traj11 (ENSMUSG00000076918) #7	Traj9 (ENSMUSG00000076919) #8	Traj7 (ENSMUSG00000076921) #9	Traj6 (ENSMUSG00000076922) #10	Traj5 (ENSMUSG00000076923) #11	Traj4 (ENSMUSG00000076924) #12	Traj3 (ENSMUSG00000076925) #13	Traj2 (ENSMUSG00000076926) #14	Trac (ENSMUSG00000076928) #15	Dad1 (ENSMUSG00000022174) #16	Abhd4 (ENSMUSG00000040997) #17	Or6e1 (ENSMUSG00000048153) #18	Oxa1l (ENSMUSG00000000959) #19	Slc7a7 (ENSMUSG00000000958) #20	Mrpl52 (ENSMUSG00000010406) #21	Mmp14 (ENSMUSG00000000957) #22	Lrp10 (ENSMUSG00000022175) #23	Rem2 (ENSMUSG00000022176) #24	Prmt5 (ENSMUSG00000023110) #25	Haus4 (ENSMUSG00000022177) #26	Ajuba (ENSMUSG00000022178) #27	4931414P19Rik (ENSMUSG00000022179) #28	Psmb5 (ENSMUSG00000022193) #29	Psmb11 (ENSMUSG00000072423) #30	Cdh24 (ENSMUSG00000059674) #31	Acin1 (ENSMUSG00000022185) #34	1700123O20Rik (ENSMUSG00000040822) #35	Cirop (ENSMUSG00000114865)	Cebpe (ENSMUSG00000052435) #36	Slc7a8 (ENSMUSG00000022180) #37	Rnf212b (ENSMUSG00000112858)