Murinae	ANCESTRAL SPECIES	16	ENSGT00940000162524.A #8	ENSGT00940000162840.C	ENSGT00940000166072 #9	ENSGT00940000160147.a #10	ENSGT00940000163224.a	ENSGT00940000164778	ENSGT00550000075201 #12	ENSGT00730000111639	ENSGT00940000164554 #14	ENSGT00390000003324 #15	ENSGT00390000016277.b #16	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00950000183634 #32	ENSGT00710000106790 #33	ENSGT00390000007438 #34	ENSGT00940000163573 #35	ENSGT00940000161681 #36	ENSGT00940000158278 #37
Mus	ANCESTRAL SPECIES	8	ENSGT00940000163224.a	ENSGT00550000075201 #12	ENSGT00730000111639	ENSGT00950000186478	ENSGT00950000186467	ENSGT00860000136119	ENSGT00950000186557	ENSGT00860000135794	ENSGT00940000164554 #14	ENSGT00390000003324 #15	ENSGT00390000016277.b #16	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00860000136194	ENSGT00950000183634 #32	ENSGT00710000106790 #33	ENSGT00390000007438 #34	ENSGT00940000163573 #35	ENSGT00940000161681 #36
Mus_A	ANCESTRAL SPECIES	12	ENSGT00950000186473	ENSGT00950000186517	ENSGT00950000186527	ENSGT00860000135743	ENSGT00950000186533	ENSGT00860000135941	ENSGT00860000135984	ENSGT00860000135636	ENSGT00940000164554 #14	ENSGT00390000003324 #15	ENSGT00390000016277.b #16	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00860000136194	ENSGT00950000183634 #32	ENSGT00710000106790 #33	ENSGT00390000007438 #34	ENSGT00940000163573 #35	ENSGT00940000161681 #36
Mus_B	ANCESTRAL SPECIES	11	ENSGT00950000186473	ENSGT00950000186517	ENSGT00950000186527	ENSGT00860000135743	ENSGT00950000186533	ENSGT00860000135941	ENSGT00860000135984	ENSGT00860000135636	ENSGT00940000164554 #14	ENSGT00390000003324 #15	ENSGT00390000016277.b #16	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00950000183634 #32	ENSGT00710000106790 #33	ENSGT00390000007438 #34	ENSGT00940000163573 #35	ENSGT00940000161681 #36	ENSGT00940000158278 #37
Mus_C	ANCESTRAL SPECIES	20	ENSGT00950000186517	ENSGT00950000186527	ENSGT00860000135743	ENSGT00950000186533	ENSGT00860000135941	ENSGT00860000135984	ENSGT00860000135636	ENSGT00940000164554 #14	ENSGT00390000003324 #15	ENSGT00390000016277.b #16	ENSGT00910000148211 #17	ENSGT01090000260011.B #18	ENSGT00530000063506.B #19	ENSGT00940000160134 #20	ENSGT00390000005763 #21	ENSGT00940000157808 #22	ENSGT00940000160783 #23	ENSGT00940000160062 #24	ENSGT00390000001141 #25	ENSGT00390000014634 #26	ENSGT00940000160978 #27	ENSGT00390000012708 #28	ENSGT00940000157841 #29	ENSGT00940000162200 #30	ENSGT00940000159567 #31	ENSGT00950000183634 #32	ENSGT00710000106790 #33	ENSGT00390000007438 #34	ENSGT00940000163573 #35	ENSGT00940000161681 #36	ENSGT00940000158278 #37
Steppe mouse	MODERN SPECIES	2984		ENSMSIG00000016011 #8	ENSMSIG00000016039 #9	ENSMSIG00000016053 #10	ENSMSIG00000016066 #11	Trdc (ENSMSIG00000016073) #12	ENSMSIG00000016075 #13	Trac (ENSMSIG00000016077) #14	Dad1 (ENSMSIG00000016087) #15	Abhd4 (ENSMSIG00000016112) #16	ENSMSIG00000016133 #17	Or6e1 (ENSMSIG00000016138) #18	Oxa1l (ENSMSIG00000016147) #19	Slc7a7 (ENSMSIG00000016170) #20	ENSMSIG00000016189 #21	Mmp14 (ENSMSIG00000016218) #22	Lrp10 (ENSMSIG00000016275) #23	Rem2 (ENSMSIG00000016298) #24	Prmt5 (ENSMSIG00000016312) #25	Haus4 (ENSMSIG00000016328) #26	Ajuba (ENSMSIG00000016353) #27	4931414P19Rik (ENSMSIG00000016385) #28	Psmb5 (ENSMSIG00000016401) #29	Psmb11 (ENSMSIG00000016415) #30	Cdh24 (ENSMSIG00000016419) #31	ENSMSIG00000016433 #32	Acin1 (ENSMSIG00000016452) #33	ENSMSIG00000016836 #34	Cirop (ENSMSIG00000016852) #35	Cebpe (ENSMSIG00000016907) #36	Slc7a8 (ENSMSIG00000016920) #37
spretus	MODERN SPECIES	5	Traj11 (MGP_SPRETEiJ_G0002300)	Traj9 (MGP_SPRETEiJ_G0002301)	Traj7 (MGP_SPRETEiJ_G0002302)	Traj6 (MGP_SPRETEiJ_G0002303)	Traj5 (MGP_SPRETEiJ_G0002304)	Traj4 (MGP_SPRETEiJ_G0002305)	Traj3 (MGP_SPRETEiJ_G0002306)	Traj2 (MGP_SPRETEiJ_G0002307)	Trac (MGP_SPRETEiJ_G0002246) #14	Dad1 (MGP_SPRETEiJ_G0020139) #15	Abhd4 (MGP_SPRETEiJ_G0020140) #16	Or6e1 (MGP_SPRETEiJ_G0020141) #18	Oxa1l (MGP_SPRETEiJ_G0020142) #19	Slc7a7 (MGP_SPRETEiJ_G0020143) #20	Mrpl52 (MGP_SPRETEiJ_G0020144) #21	Mmp14 (MGP_SPRETEiJ_G0020145) #22	Lrp10 (MGP_SPRETEiJ_G0020146) #23	Rem2 (MGP_SPRETEiJ_G0020147) #24	Prmt5 (MGP_SPRETEiJ_G0020148) #25	Haus4 (MGP_SPRETEiJ_G0020149) #26	Ajuba (MGP_SPRETEiJ_G0020150) #27	4931414P19Rik (MGP_SPRETEiJ_G0020151) #28	Psmb5 (MGP_SPRETEiJ_G0020152) #29	Psmb11 (MGP_SPRETEiJ_G0020153) #30	Cdh24 (MGP_SPRETEiJ_G0020154) #31	MGP_SPRETEiJ_G0020155	MGP_SPRETEiJ_G0020156 #32	Acin1 (MGP_SPRETEiJ_G0020157) #33	1700123O20Rik (MGP_SPRETEiJ_G0020158) #34	Cebpe (MGP_SPRETEiJ_G0020159) #36	Slc7a8 (MGP_SPRETEiJ_G0020160) #37
Mouse	MODERN SPECIES	5	Traj11 (ENSMUSG00000076918)	Traj9 (ENSMUSG00000076919)	Traj7 (ENSMUSG00000076921)	Traj6 (ENSMUSG00000076922)	Traj5 (ENSMUSG00000076923)	Traj4 (ENSMUSG00000076924)	Traj3 (ENSMUSG00000076925)	Traj2 (ENSMUSG00000076926)	Trac (ENSMUSG00000076928) #14	Dad1 (ENSMUSG00000022174) #15	Abhd4 (ENSMUSG00000040997) #16	Or6e1 (ENSMUSG00000048153) #18	Oxa1l (ENSMUSG00000000959) #19	Slc7a7 (ENSMUSG00000000958) #20	Mrpl52 (ENSMUSG00000010406) #21	Mmp14 (ENSMUSG00000000957) #22	Lrp10 (ENSMUSG00000022175) #23	Rem2 (ENSMUSG00000022176) #24	Prmt5 (ENSMUSG00000023110) #25	Haus4 (ENSMUSG00000022177) #26	Ajuba (ENSMUSG00000022178) #27	4931414P19Rik (ENSMUSG00000022179) #28	Psmb5 (ENSMUSG00000022193) #29	Psmb11 (ENSMUSG00000072423) #30	Cdh24 (ENSMUSG00000059674) #31	Acin1 (ENSMUSG00000022185) #33	1700123O20Rik (ENSMUSG00000040822) #34	Cirop (ENSMUSG00000114865) #35	Cebpe (ENSMUSG00000052435) #36	Slc7a8 (ENSMUSG00000022180) #37	Rnf212b (ENSMUSG00000112858)
Ryukyu mouse	MODERN SPECIES	5	Traj11 (MGP_CAROLIEiJ_G0002171)	Traj9 (MGP_CAROLIEiJ_G0002172)	Traj7 (MGP_CAROLIEiJ_G0002173)	Traj6 (MGP_CAROLIEiJ_G0002174)	Traj5 (MGP_CAROLIEiJ_G0002175)	Traj4 (MGP_CAROLIEiJ_G0002176)	Traj3 (MGP_CAROLIEiJ_G0002177)	Traj2 (MGP_CAROLIEiJ_G0002178)	Trac (MGP_CAROLIEiJ_G0002120) #14	Dad1 (MGP_CAROLIEiJ_G0019249) #15	Abhd4 (MGP_CAROLIEiJ_G0019250) #16	Or6e1 (MGP_CAROLIEiJ_G0019251) #18	Oxa1l (MGP_CAROLIEiJ_G0019252) #19	Slc7a7 (MGP_CAROLIEiJ_G0019253) #20	Mrpl52 (MGP_CAROLIEiJ_G0019254) #21	Mmp14 (MGP_CAROLIEiJ_G0019255) #22	Lrp10 (MGP_CAROLIEiJ_G0019256) #23	Rem2 (MGP_CAROLIEiJ_G0019257) #24	Prmt5 (MGP_CAROLIEiJ_G0019258) #25	Haus4 (MGP_CAROLIEiJ_G0019259) #26	Ajuba (MGP_CAROLIEiJ_G0019260) #27	4931414P19Rik (MGP_CAROLIEiJ_G0019261) #28	Psmb5 (MGP_CAROLIEiJ_G0019262) #29	Psmb11 (MGP_CAROLIEiJ_G0019263) #30	Cdh24 (MGP_CAROLIEiJ_G0019264) #31	MGP_CAROLIEiJ_G0019265	MGP_CAROLIEiJ_G0019266 #32	Acin1 (MGP_CAROLIEiJ_G0019267) #33	1700123O20Rik (MGP_CAROLIEiJ_G0019268) #34	Cebpe (MGP_CAROLIEiJ_G0019269) #36	Slc7a8 (MGP_CAROLIEiJ_G0019270) #37
Shrew mouse	MODERN SPECIES	21	Traj11 (MGP_PahariEiJ_G0002021)	MGP_PahariEiJ_G0002022	MGP_PahariEiJ_G0002023	Traj6 (MGP_PahariEiJ_G0002024)	Traj5 (MGP_PahariEiJ_G0002025)	Traj4 (MGP_PahariEiJ_G0002026)	Traj3 (MGP_PahariEiJ_G0002027)	Traj2 (MGP_PahariEiJ_G0002028)	Trac (MGP_PahariEiJ_G0001958) #14	Dad1 (MGP_PahariEiJ_G0030268) #15	Abhd4 (MGP_PahariEiJ_G0030269) #16	Or6e1 (MGP_PahariEiJ_G0030270) #18	Oxa1l (MGP_PahariEiJ_G0030271) #19	MGP_PahariEiJ_G0030272 #20	Mrpl52 (MGP_PahariEiJ_G0030273) #21	Mmp14 (MGP_PahariEiJ_G0030274) #22	Lrp10 (MGP_PahariEiJ_G0030275) #23	Rem2 (MGP_PahariEiJ_G0030276) #24	Prmt5 (MGP_PahariEiJ_G0030277) #25	Haus4 (MGP_PahariEiJ_G0030278) #26	Ajuba (MGP_PahariEiJ_G0030279) #27	4931414P19Rik (MGP_PahariEiJ_G0030280) #28	Psmb5 (MGP_PahariEiJ_G0030281) #29	Psmb11 (MGP_PahariEiJ_G0030282) #30	Cdh24 (MGP_PahariEiJ_G0030283) #31	MGP_PahariEiJ_G0030284	MGP_PahariEiJ_G0030285 #32	Acin1 (MGP_PahariEiJ_G0030286) #33	1700123O20Rik (MGP_PahariEiJ_G0030287) #34	Cebpe (MGP_PahariEiJ_G0030288) #36	Slc7a8 (MGP_PahariEiJ_G0030289) #37
Rat	MODERN SPECIES	6	LOC120096971 (ENSRNOG00000042103)	ENSRNOG00000065769	Trav21-dv12 (ENSRNOG00000065401) #8	LOC108353026 (ENSRNOG00000068621)	ENSRNOG00000065420 #9	ENSRNOG00000066946	ENSRNOG00000065679 #12	AC097037.1 (ENSRNOG00000033109)	ENSRNOG00000067178	ENSRNOG00000070834	Dad1 (ENSRNOG00000009090) #15	Abhd4 (ENSRNOG00000009244) #16	Or6e1 (ENSRNOG00000068252) #18	Oxa1l (ENSRNOG00000009713) #19	Slc7a7 (ENSRNOG00000010296) #20	Mmp14 (ENSRNOG00000010947) #22	Lrp10 (ENSRNOG00000011592) #23	Rem2 (ENSRNOG00000011646) #24	Prmt5 (ENSRNOG00000012046) #25	Haus4 (ENSRNOG00000039284) #26	Ajuba (ENSRNOG00000012791) #27	RGD1565222 (ENSRNOG00000013317) #28	Psmb5 (ENSRNOG00000013386) #29	Cdh24 (ENSRNOG00000013503) #31	Gm17606 (ENSRNOG00000065567) #32	Acin1 (ENSRNOG00000013533) #33	C15h14orf119 (ENSRNOG00000029146) #34	Cirop (ENSRNOG00000057827) #35	Cebpe (ENSRNOG00000014282) #36	Slc7a8 (ENSRNOG00000014311) #37	Rnf212b (ENSRNOG00000066673)