Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00390000000672.a.a	ENSGT00940000158163.a #7	ENSGT00390000012198.b.b #8	ENSGT00390000004097.a.e #9	ENSGT00390000007227.b #10	ENSGT00390000008152.B.a #11	ENSGT00390000018225.A #12	ENSGT01030000234551.i.e.b.e #13	ENSGT01030000234551.i.e.a.a.d.a.a #14	ENSGT01030000234551.i.e.a.a.d.b #16	ENSGT01030000234551.i.e.a.a.c #17	ENSGT00510000049027.c #18	ENSGT00390000017576 #19	ENSGT00390000009230.a #20	ENSGT00940000161332 #21	ENSGT00940000157113.c #22	ENSGT00940000159142 #23	ENSGT00940000156523.b.c #24	ENSGT00390000008060 #25	ENSGT00940000161721 #26	ENSGT00910000144271.A.d.b ##34	ENSGT00910000144271.A.d.a.b #28	ENSGT00910000144271.A.c.b.a.a.e.a.a #29	ENSGT00910000144271.A.c.b.a.a.e.a.b #30	ENSGT00910000144271.A.c.b.a.b.b #31	ENSGT00940000163484.t.b.b.a.a.b.b #32	ENSGT00910000144271.A.c.b.a.a.f.a.a.b #33	ENSGT00910000144271.A.d.a.a #34	ENSGT00910000144271.A.c.b.a.a.f.a.b ##34	ENSGT00940000166922 #36	ENSGT00940000154831 #37
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000158163.a #7	ENSGT00390000012198.b.b #8	ENSGT00390000004097.a.e #9	ENSGT00390000007227.b #10	ENSGT00390000008152.B.a #11	ENSGT00390000018225.A #12	ENSGT01030000234551.i.e.b.e #13	ENSGT01030000234551.i.e.a.a.d.a.a #14	ENSGT01030000234551.i.e.a.a.d.b.a #15	ENSGT01030000234551.i.e.a.a.d.b.b #16	ENSGT01030000234551.i.e.a.a.c #17	ENSGT00510000049027.c #18	ENSGT00390000017576 #19	ENSGT00390000009230.a #20	ENSGT00940000161332 #21	ENSGT00940000157113.c #22	ENSGT00940000159142 #23	ENSGT00940000156523.b.c #24	ENSGT00390000008060 #25	ENSGT00940000161721 #26	ENSGT00910000144271.A.d.a.b.b #27	ENSGT00910000144271.A.d.b ##34	ENSGT00910000144271.A.d.a.b.a #28	ENSGT00910000144271.A.c.b.a.a.e.a.a #29	ENSGT00910000144271.A.c.b.a.a.e.a.b #30	ENSGT00910000144271.A.c.b.a.b.b #31	ENSGT00940000163484.t.b.b.a.a.b.b #32	ENSGT00910000144271.A.c.b.a.a.f.a.a.b #33	ENSGT00910000144271.A.d.a.a #34	ENSGT00910000144271.A.c.b.a.a.f.a.b ##34	ENSGT00940000166922 #36
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000158163.a #7	ENSGT00390000012198.b.b #8	ENSGT00390000004097.a.e #9	ENSGT00390000007227.b #10	ENSGT00390000008152.B.a #11	ENSGT00390000018225.A #12	ENSGT01030000234551.i.e.b.e #13	ENSGT01030000234551.i.e.a.a.d.a.a #14	ENSGT01030000234551.i.e.a.a.d.b.a #15	ENSGT01030000234551.i.e.a.a.d.b.b #16	ENSGT01030000234551.i.e.a.a.c #17	ENSGT00510000049027.c #18	ENSGT00390000017576 #19	ENSGT00390000009230.a #20	ENSGT00940000161332 #21	ENSGT00940000157113.c #22	ENSGT00940000159142 #23	ENSGT00940000156523.b.c #24	ENSGT00390000008060 #25	ENSGT00940000161721 #26	ENSGT00910000144271.A.d.a.b.b #27	ENSGT00910000144271.A.d.b ##34	ENSGT00910000144271.A.d.a.b.a #28	ENSGT00910000144271.A.c.b.a.a.e.a.a #29	ENSGT00910000144271.A.c.b.a.a.e.a.b #30	ENSGT00910000144271.A.c.b.a.b.b #31	ENSGT00940000163484.t.b.b.a.a.b.b #32	ENSGT00910000144271.A.c.b.a.a.f.a.a.b #33	ENSGT00910000144271.A.d.a.a #34	ENSGT00910000144271.A.c.b.a.a.f.a.b ##34	ENSGT00940000166922 #36
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000158163.a #7	ENSGT00390000012198.b.b #8	ENSGT00390000004097.a.e #9	ENSGT00390000007227.b #10	ENSGT00390000008152.B.a #11	ENSGT00390000018225.A #12	ENSGT01030000234551.i.e.b.e #13	ENSGT01030000234551.i.e.a.a.d.a.a #14	ENSGT01030000234551.i.e.a.a.d.b.a #15	ENSGT01030000234551.i.e.a.a.d.b.b #16	ENSGT01030000234551.i.e.a.a.c #17	ENSGT00510000049027.c #18	ENSGT00390000017576 #19	ENSGT00390000009230.a #20	ENSGT00940000161332 #21	ENSGT00940000157113.c #22	ENSGT00940000159142 #23	ENSGT00940000156523.b.c #24	ENSGT00390000008060 #25	ENSGT00940000161721 #26	ENSGT00910000144271.A.d.a.b.b #27	ENSGT00910000144271.A.d.a.b.a #28	ENSGT00910000144271.A.c.b.a.a.e.a.a #29	ENSGT00910000144271.A.c.b.a.a.e.a.b #30	ENSGT00910000144271.A.c.b.a.b.b #31	ENSGT00940000163484.t.b.b.a.a.b.b #32	ENSGT00910000144271.A.c.b.a.a.f.a.a.b #33	ENSGT00910000144271.A.d.a.a #34	ENSGT00910000144271.A.c.b.a.a.f.a.b ##34	ENSGT00940000166922 #36	ENSGT00940000154831 #37
P. nyererei	MODERN SPECIES	351	slc25a42 (ENSPNYG00000020240) #7	MAU2 (ENSPNYG00000020286) #8	gatad2ab (ENSPNYG00000020347) #9	yjefn3 (ENSPNYG00000020393) #10	CILP2 (ENSPNYG00000020439) #11	si:ch211-212d10.2 (ENSPNYG00000020448) #12	ENSPNYG00000020462 #13	ENSPNYG00000020500 #14	ENSPNYG00000020547 #15	ENSPNYG00000020561 #16	ENSPNYG00000020612 #17	midn (ENSPNYG00000020649) #18	atp5f1d (ENSPNYG00000020668) #19	CBARP (ENSPNYG00000020688) #20	fstl3 (ENSPNYG00000020710) #21	RNF126 (ENSPNYG00000020724) #22	bsg (ENSPNYG00000020755) #23	HCN2 (ENSPNYG00000020768) #24	POLRMT (ENSPNYG00000020790) #25	fgf22 (ENSPNYG00000020815) #26	ENSPNYG00000020860 #27	ENSPNYG00000020962 #28	ENSPNYG00000021257 #29	ENSPNYG00000021309 #30	ENSPNYG00000021358 #31	ENSPNYG00000021399 #32	ENSPNYG00000021475 #33	ENSPNYG00000021585 #34	ENSPNYG00000021605 #35	ENSPNYG00000021664 #36	faf1 (ENSPNYG00000021679) #37
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00940000158163.a #7	ENSGT00390000012198.b.b #8	ENSGT00390000004097.a.e #9	ENSGT00390000007227.b #10	ENSGT00390000008152.B.a #11	ENSGT00390000018225.A #12	ENSGT01030000234551.i.e.b.e #13	ENSGT01030000234551.i.e.a.a.d.a.a #14	ENSGT01030000234551.i.e.a.a.d.b.a #15	ENSGT01030000234551.i.e.a.a.d.b.b #16	ENSGT01030000234551.i.e.a.a.c #17	ENSGT00510000049027.c #18	ENSGT00390000017576 #19	ENSGT00390000009230.a #20	ENSGT00940000161332 #21	ENSGT00940000157113.c #22	ENSGT00940000159142 #23	ENSGT00940000156523.b.c #24	ENSGT00390000008060 #25	ENSGT00940000161721 #26	ENSGT00910000144271.A.d.a.b.b #27	ENSGT00910000144271.A.d.a.b.a #28	ENSGT00910000144271.A.c.b.a.a.e.a.a #29	ENSGT00910000144271.A.c.b.a.a.e.a.b #30	ENSGT00910000144271.A.c.b.a.b.b #31	ENSGT00940000163484.t.b.b.a.a.b.b #32	ENSGT00910000144271.A.c.b.a.a.f.a.a.b #33	ENSGT00910000144271.A.d.a.a #34	ENSGT00910000144271.A.c.b.a.a.f.a.b ##34	ENSGT00940000166922 #36	ENSGT00940000154831 #37
Zebra mbuna	MODERN SPECIES	1105	MAU2 (ENSMZEG00005010385) #8	gatad2ab (ENSMZEG00005010348) #9	yjefn3 (ENSMZEG00005010325) #10	CILP2 (ENSMZEG00005010305) #11	si:ch211-212d10.2 (ENSMZEG00005010289) #12	ENSMZEG00005010279	ENSMZEG00005010272 #13	ENSMZEG00005010259 #14	ENSMZEG00005010248 #15	ENSMZEG00005010236 #16	ENSMZEG00005010217 #17	midn (ENSMZEG00005010194) #18	atp5f1d (ENSMZEG00005010180) #19	CBARP (ENSMZEG00005010159) #20	fstl3 (ENSMZEG00005010127) #21	RNF126 (ENSMZEG00005010095) #22	bsg (ENSMZEG00005010074) #23	HCN2 (ENSMZEG00005009995) #24	POLRMT (ENSMZEG00005009932) #25	fgf22 (ENSMZEG00005009912) #26	ENSMZEG00005009860 #27	ENSMZEG00005009814 #29	ENSMZEG00005009797 #30	ENSMZEG00005009746 #31	ENSMZEG00005009718 #32	ENSMZEG00005009702 ##34	ENSMZEG00005009672 #34	ENSMZEG00005009609 #33	ENSMZEG00005009588 #32	ENSMZEG00005009489 #31	bend5 (ENSMZEG00005009448)
Eastern happy	MODERN SPECIES	14	tmem161a (ENSACLG00000004706)	slc25a42 (ENSACLG00000004664) #7	MAU2 (ENSACLG00000004571) #8	gatad2ab (ENSACLG00000004521) #9	yjefn3 (ENSACLG00000004422) #10	CILP2 (ENSACLG00000004394) #11	si:ch211-212d10.2 (ENSACLG00000004384) #12	ENSACLG00000004365 #13	ENSACLG00000004346 #14	ENSACLG00000004337 #16	ENSACLG00000004325 #17	midn (ENSACLG00000003950) #18	atp5f1d (ENSACLG00000003934) #19	CBARP (ENSACLG00000003913) #20	fstl3 (ENSACLG00000003890) #21	RNF126 (ENSACLG00000003847) #22	ENSACLG00000003832 #23	bsg (ENSACLG00000003823) #23	HCN2 (ENSACLG00000003818) #24	POLRMT (ENSACLG00000003766) #25	fgf22 (ENSACLG00000003305) #26	ENSACLG00000003293 #27	ENSACLG00000003286 #28	ENSACLG00000003283 #29	ENSACLG00000003266 #30	ENSACLG00000003257 #31	ENSACLG00000003248 #32	ENSACLG00000003147 #33	ENSACLG00000003114 #34	ENSACLG00000003099 ##34	ENSACLG00000003037 #36
Burton s mouthbrooder	MODERN SPECIES	307	tmem161a (ENSHBUG00000010506)	slc25a42 (ENSHBUG00000010466) #7	MAU2 (ENSHBUG00000010427) #8	gatad2ab (ENSHBUG00000010358) #9	yjefn3 (ENSHBUG00000010318) #10	CILP2 (ENSHBUG00000010309) #11	si:ch211-212d10.2 (ENSHBUG00000010297) #12	ENSHBUG00000010276 #13	ENSHBUG00000010268 #14	ENSHBUG00000010202 #15	ENSHBUG00000000261 #16	midn (ENSHBUG00000000259) #18	atp5f1d (ENSHBUG00000010138) #19	CBARP (ENSHBUG00000010120) #20	fstl3 (ENSHBUG00000010104) #21	RNF126 (ENSHBUG00000010085) #22	bsg (ENSHBUG00000010032) #23	HCN2 (ENSHBUG00000010015) #24	POLRMT (ENSHBUG00000010005) #25	fgf22 (ENSHBUG00000009990) #26	ENSHBUG00000009983 #27	ENSHBUG00000000940 ##34	ENSHBUG00000009898 #28	ENSHBUG00000009889 #29	ENSHBUG00000009863 #30	ENSHBUG00000009858 #31	ENSHBUG00000009850 #32	ENSHBUG00000009842 #33	ENSHBUG00000009827 #34	ENSHBUG00000009803 ##34	ENSHBUG00000009785 #36
Lyretail cichlid	MODERN SPECIES	361	ENSNBRG00000023218	tmem161a (ENSNBRG00000023231)	slc25a42 (ENSNBRG00000023312) #7	MAU2 (ENSNBRG00000023326) #8	gatad2ab (ENSNBRG00000023349) #9	yjefn3 (ENSNBRG00000023366) #10	CILP2 (ENSNBRG00000023381) #11	si:ch211-212d10.2 (ENSNBRG00000023395) #12	ENSNBRG00000023405 #13	ENSNBRG00000023418 #15	ENSNBRG00000023435 #16	midn (ENSNBRG00000023452) #18	atp5f1d (ENSNBRG00000023463) #19	CBARP (ENSNBRG00000023473) #20	fstl3 (ENSNBRG00000023499) #21	RNF126 (ENSNBRG00000023507) #22	bsg (ENSNBRG00000023510) #23	HCN2 (ENSNBRG00000023521) #24	POLRMT (ENSNBRG00000023530) #25	fgf22 (ENSNBRG00000023548) #26	ENSNBRG00000023565 #27	ENSNBRG00000023618 #29	ENSNBRG00000023656 #30	ENSNBRG00000023672 #31	ENSNBRG00000023689 #32	ENSNBRG00000023699 #34	ENSNBRG00000023719 ##34	faf1 (ENSNBRG00000023733) #37	dmrta2 (ENSNBRG00000023755)	ENSNBRG00000023764	AGBL4 (ENSNBRG00000023778)
Nile tilapia	MODERN SPECIES	14	ENSONIG00000034927	tmem161a (ENSONIG00000002464)	slc25a42 (ENSONIG00000002461) #7	MAU2 (ENSONIG00000002458) #8	gatad2ab (ENSONIG00000002454) #9	yjefn3 (ENSONIG00000002450) #10	CILP2 (ENSONIG00000002448) #11	si:ch211-212d10.2 (ENSONIG00000002447) #12	ENSONIG00000002442 #13	ENSONIG00000002441 #14	ENSONIG00000002433 #17	midn (ENSONIG00000040836) #18	atp5f1d (ENSONIG00000002428) #19	CBARP (ENSONIG00000002423) #20	fstl3 (ENSONIG00000039200) #21	RNF126 (ENSONIG00000002419) #22	bsg (ENSONIG00000002415) #23	HCN2 (ENSONIG00000002411) #24	POLRMT (ENSONIG00000002405) #25	fgf22 (ENSONIG00000002404) #26	ENSONIG00000002397 ##34	ENSONIG00000020200 #28	ENSONIG00000002390 #31	ENSONIG00000037251 #32	ENSONIG00000002381 #33	ENSONIG00000002378 #34	ENSONIG00000038950	ENSONIG00000002375 ##34	ENSONIG00000002371 #36	faf1 (ENSONIG00000002366) #37	dmrta2 (ENSONIG00000002365)