Sarcopterygii	ANCESTRAL SPECIES	174	ENSGT00940000156426	ENSGT00940000155428	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00940000164416	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000156819.b ##24	ENSGT00830000128368.a
Tetrapoda	ANCESTRAL SPECIES	15	ENSGT00940000163025.b	ENSGT00940000156426	ENSGT00940000155428	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000156819.a.a #24
Amniota	ANCESTRAL SPECIES	12	ENSGT00940000156426	ENSGT00940000155428	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00400000024959	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046
Mammalia	ANCESTRAL SPECIES	22	ENSGT00950000183132.B	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Theria	ANCESTRAL SPECIES	13	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000163249 #12	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Eutheria	ANCESTRAL SPECIES	11	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755.d ##8	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Glires	ANCESTRAL SPECIES	17	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Rodentia	ANCESTRAL SPECIES	18	ENSGT00950000183147.B	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000164098 #9	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.d #11	ENSGT00940000164098 #9	ENSGT00940000161877.c.b #10	ENSGT00940000161877.c.a ##11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000154755.c.b.e ##8	ENSGT00940000154755.c.a #8	ENSGT00940000164098 #9	ENSGT00940000161877.c.b #10	ENSGT00940000161877.d #11	ENSGT00940000161877.c.a ##11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005012618 #7	ENSSVLG00005012635 #8	ENSSVLG00005012678 #9	ENSSVLG00005012749 #10	ENSSVLG00005012823 #11	ENSSVLG00005012871 #12	CST8 (ENSSVLG00005000126) #13	ENSSVLG00005000133 #14	ENSSVLG00005000139 #15	CST11 (ENSSVLG00005000162) #16	CSTL1 (ENSSVLG00005000168) #17	NAPB (ENSSVLG00005000227) #18	GZF1 (ENSSVLG00005000288) #19	ENSSVLG00005000304 #20	ENSSVLG00005000317 #21	CD93 (ENSSVLG00005000330) #22	THBD (ENSSVLG00005000349) #23	SSTR4 (ENSSVLG00005000359) #24	ENSSVLG00005000368 #25	FOXA2 (ENSSVLG00005000389) #26	ENSSVLG00005000403 #27	PAX1 (ENSSVLG00005000421) #28	NKX2-2 (ENSSVLG00005000441) #29	NKX2-4 (ENSSVLG00005000455) #30	XRN2 (ENSSVLG00005000470) #31	KIZ (ENSSVLG00005000513) #32	ENSSVLG00005000546 #33	RALGAPA2 (ENSSVLG00005000611) #34	INSM1 (ENSSVLG00005000689) #35	CFAP61 (ENSSVLG00005000731) #36	ENSSVLG00005000777 #37
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000154755.c.b.f ##8	ENSGT00940000154755.c.b.e ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.b #10	ENSGT00940000161877.d #11	ENSGT00940000161877.c.a ##11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00390000007696.e.a.a.a	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046
Marmotini_b	ANCESTRAL SPECIES	140	ENSGT00940000154755.c.b.f ##8	ENSGT00940000154755.c.b.e ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.b #10	ENSGT00940000161877.d #11	ENSGT00940000161877.c.a ##11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00390000007696.e.a.a.a
Squirrel	MODERN SPECIES	220	ENSSTOG00000023496	ENSSTOG00000026963 #8	ENSSTOG00000015564 #10	ENSSTOG00000028869 #11	ENSSTOG00000004129 #12	ENSSTOG00000020102	CST8 (ENSSTOG00000004122) #13	ENSSTOG00000024532 #14	ENSSTOG00000021841 #15	CST11 (ENSSTOG00000004847) #16	CSTL1 (ENSSTOG00000024563) #17	NAPB (ENSSTOG00000022350) #18	ENSSTOG00000030626	GZF1 (ENSSTOG00000009820) #19	NXT1 (ENSSTOG00000026331) #21	CD93 (ENSSTOG00000024530) #22	SSTR4 (ENSSTOG00000021697) #24	FOXA2 (ENSSTOG00000020150) #26	PAX1 (ENSSTOG00000003000) #28	NKX2-2 (ENSSTOG00000021450) #29	XRN2 (ENSSTOG00000000589) #31	KIZ (ENSSTOG00000007449) #32
Arctic ground squirrel	MODERN SPECIES	114	ENSUPAG00010009918 #10	ENSUPAG00010009902 ##11	ENSUPAG00010009895 #12	CST8 (ENSUPAG00010009884) #13	ENSUPAG00010009878 #14	ENSUPAG00010009872 #15	CST11 (ENSUPAG00010009858) #16	CSTL1 (ENSUPAG00010009856) #17	ENSUPAG00010009855	ENSUPAG00010009850	NAPB (ENSUPAG00010009788) #18	GZF1 (ENSUPAG00010009780) #19	NXT1 (ENSUPAG00010009776) #21	ENSUPAG00010009772	ENSUPAG00010009759	CD93 (ENSUPAG00010009758) #22	THBD (ENSUPAG00010009753) #23	SSTR4 (ENSUPAG00010009751) #24	FOXA2 (ENSUPAG00010009738) #26	ENSUPAG00010009726	PAX1 (ENSUPAG00010009718) #28	NKX2-2 (ENSUPAG00010009710) #29	NKX2-4 (ENSUPAG00010009706) #30	XRN2 (ENSUPAG00010009667) #31	KIZ (ENSUPAG00010009237) #32	ENSUPAG00010009220
Alpin marmot	MODERN SPECIES		SYNDIG1 (ENSMMMG00000004598)	ENSMMMG00000004547 ##8	ENSMMMG00000004528 #8	ENSMMMG00000004523 #10	ENSMMMG00000004513 #12	CST8 (ENSMMMG00000004504) #13	ENSMMMG00000004491 #14	ENSMMMG00000004483 #15	CST11 (ENSMMMG00000004467) #16	CSTL1 (ENSMMMG00000004456) #17	ENSMMMG00000004433	NAPB (ENSMMMG00000004419) #18	GZF1 (ENSMMMG00000004407) #19	NXT1 (ENSMMMG00000004405) #21	ENSMMMG00000004398	CD93 (ENSMMMG00000004395) #22	THBD (ENSMMMG00000004391) #23	SSTR4 (ENSMMMG00000004385) #24	FOXA2 (ENSMMMG00000004350) #26	PAX1 (ENSMMMG00000004326) #28	NKX2-2 (ENSMMMG00000004284) #29	XRN2 (ENSMMMG00000004161) #31	KIZ (ENSMMMG00000003881) #32	ENSMMMG00000003871	RALGAPA2 (ENSMMMG00000003453) #34	ENSMMMG00000003417	ENSMMMG00000003408 #36	ENSMMMG00000003290 #36	CRNKL1 (ENSMMMG00000003244)	NAA20 (ENSMMMG00000003240)	RIN2 (ENSMMMG00000003172)
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.d #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987.n.a #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b.c ##8	ENSGT00940000154755.c.b.d ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.d #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987.n.a #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b.c ##8	ENSGT00940000154755.c.b.d ##8	ENSGT00940000154755.c.a #8	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987.n.a #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Long-tailed chinchilla	MODERN SPECIES	122	VSX1 (ENSCLAG00000015160)	ACSS1 (ENSCLAG00000012190)	APMAP (ENSCLAG00000013445)	CST7 (ENSCLAG00000015428)	SYNDIG1 (ENSCLAG00000012586)	ENSCLAG00000012454 ##8	ENSCLAG00000015899 ##8	ENSCLAG00000017066 #12	ENSCLAG00000015212 #13	ENSCLAG00000015474 #14	ENSCLAG00000011384 #16	CSTL1 (ENSCLAG00000012446) #17	NAPB (ENSCLAG00000011540) #18	GZF1 (ENSCLAG00000014714) #19	NXT1 (ENSCLAG00000012493) #21	CD93 (ENSCLAG00000012062) #22	THBD (ENSCLAG00000011994) #23	FOXA2 (ENSCLAG00000014548) #26	PAX1 (ENSCLAG00000016362) #28	NKX2-2 (ENSCLAG00000016430) #29	XRN2 (ENSCLAG00000013419) #31	KIZ (ENSCLAG00000012565) #32	RALGAPA2 (ENSCLAG00000012502) #34	CFAP61 (ENSCLAG00000014155) #36	CRNKL1 (ENSCLAG00000013859)	NAA20 (ENSCLAG00000014313)	RIN2 (ENSCLAG00000015234)	SLC24A3 (ENSCLAG00000015547)	DTD1 (ENSCLAG00000015302)	SEC23B (ENSCLAG00000014924)	RBBP9 (ENSCLAG00000014851)
Degu	MODERN SPECIES	114	VSX1 (ENSODEG00000010102)	ACSS1 (ENSODEG00000010733)	APMAP (ENSODEG00000010678)	CST7 (ENSODEG00000011264)	SYNDIG1 (ENSODEG00000012369)	ENSODEG00000019797	CST3 (ENSODEG00000012334) #8	ENSODEG00000010611 #12	ENSODEG00000010448 #13	ENSODEG00000012595 #14	CST11 (ENSODEG00000013274) #16	CSTL1 (ENSODEG00000010719) #17	NAPB (ENSODEG00000011065) #18	GZF1 (ENSODEG00000013020) #19	NXT1 (ENSODEG00000019900) #21	CD93 (ENSODEG00000012518) #22	THBD (ENSODEG00000010709) #23	FOXA2 (ENSODEG00000011162) #26	PAX1 (ENSODEG00000012427) #28	ENSODEG00000019878	ENSODEG00000019885	NKX2-2 (ENSODEG00000012371) #29	ENSODEG00000012687	NKX2-4 (ENSODEG00000010842) #30	ENSODEG00000010745 #31	ENSODEG00000011188	KIZ (ENSODEG00000011491) #32	RALGAPA2 (ENSODEG00000011023) #34	INSM1 (ENSODEG00000020028) #35	ENSODEG00000011346	ENSODEG00000012124 #36
Guinea pig	MODERN SPECIES	8	APMAP (ENSCPOG00000008131)	CST7 (ENSCPOG00000008022)	SYNDIG1 (ENSCPOG00000004943)	ENSCPOG00000026799 ##8	ENSCPOG00000030984 ##8	ENSCPOG00000030716 #8	ENSCPOG00000025294 #11	ENSCPOG00000021926 #12	CST8 (ENSCPOG00000005550) #13	ENSCPOG00000025993 #14	ENSCPOG00000003822 #16	CSTL1 (ENSCPOG00000008734) #17	NAPB (ENSCPOG00000039063) #18	GZF1 (ENSCPOG00000010790) #19	NXT1 (ENSCPOG00000008817) #21	CD93 (ENSCPOG00000010252) #22	THBD (ENSCPOG00000030575) #23	FOXA2 (ENSCPOG00000033370) #26	PAX1 (ENSCPOG00000002886) #28	NKX2-2 (ENSCPOG00000000408) #29	XRN2 (ENSCPOG00000009407) #31	KIZ (ENSCPOG00000005683) #32	RALGAPA2 (ENSCPOG00000001602) #34	ENSCPOG00000038064	ENSCPOG00000039658 #36	ENSCPOG00000001594 #36	CRNKL1 (ENSCPOG00000004418)	NAA20 (ENSCPOG00000001593)	RIN2 (ENSCPOG00000013179)	SLC24A3 (ENSCPOG00000011970)	DTD1 (ENSCPOG00000002416)
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.b.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.b.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001019793	Cst10 (ENSCGRG00001015577) ##8	ENSCGRG00001017333 ##8	ENSCGRG00001020338	ENSCGRG00001014456	ENSCGRG00001017812 #10	Cst13 (ENSCGRG00001024079) #12	Cst8 (ENSCGRG00001020750) #13	Cst12 (ENSCGRG00001024036) #14	Cstdc1 (ENSCGRG00001024407) #15	Cst11 (ENSCGRG00001004859) #16	Cstl1 (ENSCGRG00001006313) #17	Napb (ENSCGRG00001015884) #18	Gzf1 (ENSCGRG00001003944) #19	ENSCGRG00001007062 #21	Cd93 (ENSCGRG00001016628) #22	Thbd (ENSCGRG00001010215) #23	Sstr4 (ENSCGRG00001010896) #24	Foxa2 (ENSCGRG00001000494) #26	Pax1 (ENSCGRG00001009223) #28	Nkx2-2 (ENSCGRG00001013924) #29	ENSCGRG00001016394	Nkx2-4 (ENSCGRG00001002742) #30	Xrn2 (ENSCGRG00001010676) #31	Kiz (ENSCGRG00001020800) #32	Ralgapa2 (ENSCGRG00001024249) #34	Insm1 (ENSCGRG00001011430) #35	Cfap61 (ENSCGRG00001022702) #36	Slc24a3 (ENSCGRG00001004364)	Scp2d1 (ENSCGRG00001008412)	Dtd1 (ENSCGRG00001008221)
Golden Hamster	MODERN SPECIES	650	Acss1 (ENSMAUG00000016079)	Apmap (ENSMAUG00000022255)	Cst7 (ENSMAUG00000006797)	1810024B03Rik (ENSMAUG00000019265)	Syndig1 (ENSMAUG00000012485)	ENSMAUG00000013001	Cst10 (ENSMAUG00000020427) ##8	Cst3 (ENSMAUG00000012476) #8	Cstdc2 (ENSMAUG00000014409) ##11	Cst9 (ENSMAUG00000012174) #10	Cst13 (ENSMAUG00000021851) #12	Cst12 (ENSMAUG00000010970) #14	Napb (ENSMAUG00000018004) #18	Gzf1 (ENSMAUG00000019656) #19	Nxt1 (ENSMAUG00000004141) #21	Cd93 (ENSMAUG00000019441) #22	Sstr4 (ENSMAUG00000008430) #24	Foxa2 (ENSMAUG00000016457) #26	Pax1 (ENSMAUG00000019674) #28	Nkx2-2 (ENSMAUG00000004347) #29	Nkx2-4 (ENSMAUG00000013928) #30	Xrn2 (ENSMAUG00000021842) #31	Kiz (ENSMAUG00000012933) #32	Ralgapa2 (ENSMAUG00000000917) #34	Insm1 (ENSMAUG00000008643) #35	Cfap61 (ENSMAUG00000021388) #36	ENSMAUG00000018263	ENSMAUG00000014865	Crnkl1 (ENSMAUG00000020764)	Naa20 (ENSMAUG00000016403)	Rin2 (ENSMAUG00000010319)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00950000183147.B	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.b.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Northern American deer mouse	MODERN SPECIES	17	Syndig1 (ENSPEMG00000002878)	Cst10 (ENSPEMG00000018501) ##8	ENSPEMG00000025257	ENSPEMG00000028985 ##8	Cst3 (ENSPEMG00000019347) #8	Cst9 (ENSPEMG00000020106) #10	Cst13 (ENSPEMG00000005338) #12	Cst8 (ENSPEMG00000030932) #13	Cst12 (ENSPEMG00000000557) #14	Cstdc1 (ENSPEMG00000018705) #15	Cst11 (ENSPEMG00000000143) #16	Cstl1 (ENSPEMG00000015396) #17	Napb (ENSPEMG00000014658) #18	Gzf1 (ENSPEMG00000011285) #19	Nxt1 (ENSPEMG00000010397) #21	Cd93 (ENSPEMG00000009909) #22	Thbd (ENSPEMG00000013258) #23	Sstr4 (ENSPEMG00000013404) #24	Foxa2 (ENSPEMG00000018383) #26	ENSPEMG00000013352	Pax1 (ENSPEMG00000013032) #28	Nkx2-2 (ENSPEMG00000031205) #29	Xrn2 (ENSPEMG00000000111) #31	Kiz (ENSPEMG00000019926) #32	ENSPEMG00000018301	Ralgapa2 (ENSPEMG00000015207) #34	Insm1 (ENSPEMG00000011704) #35	Cfap61 (ENSPEMG00000019999) #36	Crnkl1 (ENSPEMG00000000073)	Naa20 (ENSPEMG00000019944)	Rin2 (ENSPEMG00000007218)
Prairie vole	MODERN SPECIES	86				Cst3 (ENSMOCG00000018857) #8	Cstdc2 (ENSMOCG00000021896) ##11	Cst13 (ENSMOCG00000012990) #12	Cst8 (ENSMOCG00000020831) #13	Cst12 (ENSMOCG00000013277) #14	Cstdc1 (ENSMOCG00000015424) #15	Cst11 (ENSMOCG00000016678) #16	Cstl1 (ENSMOCG00000019330) #17	Napb (ENSMOCG00000000502) #18	Gzf1 (ENSMOCG00000017816) #19	Nxt1 (ENSMOCG00000018712) #21	ENSMOCG00000014565	Cd93 (ENSMOCG00000008988) #22	Thbd (ENSMOCG00000004558) #23	Sstr4 (ENSMOCG00000004743) #24	Foxa2 (ENSMOCG00000017025) #26	Pax1 (ENSMOCG00000000474) #28	Nkx2-2 (ENSMOCG00000016851) #29	Nkx2-4 (ENSMOCG00000012451) #30	Xrn2 (ENSMOCG00000012588) #31	Kiz (ENSMOCG00000022509) #32	ENSMOCG00000020632	Ralgapa2 (ENSMOCG00000015663) #34	Insm1 (ENSMOCG00000010418) #35	Cfap61 (ENSMOCG00000001829) #36	ENSMOCG00000000681	ENSMOCG00000021892	Rin2 (ENSMOCG00000011014)
Murinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mus	ANCESTRAL SPECIES	1	ENSGT00950000183147.B	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00950000183147.B	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00970000195442	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
Mus_B	ANCESTRAL SPECIES	1	ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000172008	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00970000195442	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
Mouse	MODERN SPECIES	11	Syndig1 (ENSMUSG00000074736)	Cst10 (ENSMUSG00000033156) ##8	Gm1330 (ENSMUSG00000063507)	Cst3 (ENSMUSG00000027447) #8	Cstdc2 (ENSMUSG00000027446) ##11	Cst9 (ENSMUSG00000027445) #10	Cst13 (ENSMUSG00000036924) #12	Cst8 (ENSMUSG00000027442) #13	Cst12 (ENSMUSG00000027443) #14	Cstdc1 (ENSMUSG00000027444) #15	Cst11 (ENSMUSG00000036958) #16	Cstl1 (ENSMUSG00000055177) #17	Napb (ENSMUSG00000027438) #18	Gzf1 (ENSMUSG00000027439) #19	Nxt1 (ENSMUSG00000036992) #21	Cd93 (ENSMUSG00000027435) #22	Thbd (ENSMUSG00000074743) #23	Sstr4 (ENSMUSG00000037014) #24	Foxa2 (ENSMUSG00000037025) #26	Pax1 (ENSMUSG00000037034) #28	Nkx2-2 (ENSMUSG00000027434) #29	Nkx2-4 (ENSMUSG00000054160) #30	Xrn2 (ENSMUSG00000027433) #31	Kiz (ENSMUSG00000074749) #32	Ralgapa2 (ENSMUSG00000037110) #34	Insm1 (ENSMUSG00000068154) #35	Cfap61 (ENSMUSG00000037143) #36	Crnkl1 (ENSMUSG00000001767)	Naa20 (ENSMUSG00000002728)	Rin2 (ENSMUSG00000001768)	Slc24a3 (ENSMUSG00000063873)
Mus_C	ANCESTRAL SPECIES		ENSGT00860000135980	ENSGT00940000154755.c.b.a ##8	ENSGT00940000172008	ENSGT00940000154755.c.a #8	ENSGT00940000161877.c.a ##11	ENSGT00940000161877.c.b #10	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00970000195442	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931.m	ENSGT00550000075046	ENSGT00940000154866.B
spretus	MODERN SPECIES	11	Syndig1 (MGP_SPRETEiJ_G0025340)	Cst10 (MGP_SPRETEiJ_G0025339) ##8	MGP_SPRETEiJ_G0025338	Cst3 (MGP_SPRETEiJ_G0025337) #8	Cstdc2 (MGP_SPRETEiJ_G0025336) ##11	Cst9 (MGP_SPRETEiJ_G0025335) #10	Cst13 (MGP_SPRETEiJ_G0025334) #12	Cst8 (MGP_SPRETEiJ_G0025333) #13	Cst12 (MGP_SPRETEiJ_G0025332) #14	Cstdc1 (MGP_SPRETEiJ_G0025331) #15	Cst11 (MGP_SPRETEiJ_G0025330) #16	Cstl1 (MGP_SPRETEiJ_G0025329) #17	Napb (MGP_SPRETEiJ_G0025328) #18	Gzf1 (MGP_SPRETEiJ_G0025327) #19	Nxt1 (MGP_SPRETEiJ_G0025326) #21	Cd93 (MGP_SPRETEiJ_G0025325) #22	Thbd (MGP_SPRETEiJ_G0025324) #23	Sstr4 (MGP_SPRETEiJ_G0025323) #24	Foxa2 (MGP_SPRETEiJ_G0025322) #26	Pax1 (MGP_SPRETEiJ_G0025321) #28	Nkx2-2 (MGP_SPRETEiJ_G0025320) #29	Nkx2-4 (MGP_SPRETEiJ_G0025319) #30	Xrn2 (MGP_SPRETEiJ_G0025318) #31	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316) #32	Ralgapa2 (MGP_SPRETEiJ_G0025315) #34	Insm1 (MGP_SPRETEiJ_G0025314) #35	Cfap61 (MGP_SPRETEiJ_G0025313) #36	Crnkl1 (MGP_SPRETEiJ_G0025312)	Naa20 (MGP_SPRETEiJ_G0025311)	Rin2 (MGP_SPRETEiJ_G0025310)
Steppe mouse	MODERN SPECIES	41			Cst3 (ENSMSIG00000003295) #8	Cstdc2 (ENSMSIG00000003283) ##11	Cst9 (ENSMSIG00000003261) #10	Cst13 (ENSMSIG00000003223) #12	Cst8 (ENSMSIG00000003194) #13	Cst12 (ENSMSIG00000003169) #14	Cstdc1 (ENSMSIG00000003153) #15	Cst11 (ENSMSIG00000003137) #16	Cstl1 (ENSMSIG00000003118) #17	Napb (ENSMSIG00000003094) #18	Gzf1 (ENSMSIG00000003080) #19	Nxt1 (ENSMSIG00000003067) #21	ENSMSIG00000003019	Cd93 (ENSMSIG00000002996) #22	Thbd (ENSMSIG00000002989) #23	Sstr4 (ENSMSIG00000002973) #24	Foxa2 (ENSMSIG00000002945) #26
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024422	Syndig1 (MGP_CAROLIEiJ_G0024421)	Cst10 (MGP_CAROLIEiJ_G0024420) ##8	Cst3 (MGP_CAROLIEiJ_G0024419) #8	Cstdc2 (MGP_CAROLIEiJ_G0024418) ##11	Cst9 (MGP_CAROLIEiJ_G0024417) #10	Cst13 (MGP_CAROLIEiJ_G0024416) #12	Cst8 (MGP_CAROLIEiJ_G0024415) #13	Cst12 (MGP_CAROLIEiJ_G0024414) #14	Cstdc1 (MGP_CAROLIEiJ_G0024413) #15	Cst11 (MGP_CAROLIEiJ_G0024412) #16	Cstl1 (MGP_CAROLIEiJ_G0024411) #17	Napb (MGP_CAROLIEiJ_G0024410) #18	Gzf1 (MGP_CAROLIEiJ_G0024409) #19	Nxt1 (MGP_CAROLIEiJ_G0024408) #21	Cd93 (MGP_CAROLIEiJ_G0024407) #22	Thbd (MGP_CAROLIEiJ_G0024406) #23	Sstr4 (MGP_CAROLIEiJ_G0024405) #24	Foxa2 (MGP_CAROLIEiJ_G0024404) #26	Pax1 (MGP_CAROLIEiJ_G0024403) #28	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #29	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #30	Xrn2 (MGP_CAROLIEiJ_G0024400) #31	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398) #32	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #34	Insm1 (MGP_CAROLIEiJ_G0024396) #35	Cfap61 (MGP_CAROLIEiJ_G0024395) #36	Crnkl1 (MGP_CAROLIEiJ_G0024394)	Naa20 (MGP_CAROLIEiJ_G0024393)	Rin2 (MGP_CAROLIEiJ_G0024392)
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025865	MGP_PahariEiJ_G0025864	Syndig1 (MGP_PahariEiJ_G0025863)	Cst10 (MGP_PahariEiJ_G0025862) ##8	Cst3 (MGP_PahariEiJ_G0025861) #8	Cstdc2 (MGP_PahariEiJ_G0025860) ##11	Cst13 (MGP_PahariEiJ_G0025859) #12	Cst8 (MGP_PahariEiJ_G0025858) #13	Cst12 (MGP_PahariEiJ_G0025857) #14	Cstdc1 (MGP_PahariEiJ_G0025856) #15	Cst11 (MGP_PahariEiJ_G0025855) #16	Cstl1 (MGP_PahariEiJ_G0025854) #17	Napb (MGP_PahariEiJ_G0025853) #18	Gzf1 (MGP_PahariEiJ_G0025852) #19	Nxt1 (MGP_PahariEiJ_G0025851) #21	Cd93 (MGP_PahariEiJ_G0025850) #22	Thbd (MGP_PahariEiJ_G0025849) #23	Sstr4 (MGP_PahariEiJ_G0025848) #24	Foxa2 (MGP_PahariEiJ_G0025847) #26	Pax1 (MGP_PahariEiJ_G0025846) #28	Nkx2-2 (MGP_PahariEiJ_G0025845) #29	Nkx2-4 (MGP_PahariEiJ_G0025844) #30	Xrn2 (MGP_PahariEiJ_G0025843) #31	Kiz (MGP_PahariEiJ_G0025842) #32	Ralgapa2 (MGP_PahariEiJ_G0025841) #34	Insm1 (MGP_PahariEiJ_G0025840) #35	Cfap61 (MGP_PahariEiJ_G0025839) #36	Crnkl1 (MGP_PahariEiJ_G0025838)	Naa20 (MGP_PahariEiJ_G0025837)	Rin2 (MGP_PahariEiJ_G0025836)	MGP_PahariEiJ_G0025835
Rat	MODERN SPECIES	13	Fth1-ps5 (ENSRNOG00000033100)	Andpro (ENSRNOG00000031840) ##8	AABR07054186.1 (ENSRNOG00000032769)	Cst3 (ENSRNOG00000005195) #8	Cstdc2 (ENSRNOG00000005178) ##11	Cst9l (ENSRNOG00000005162) #10	Cst13 (ENSRNOG00000005103) #12	Cst8 (ENSRNOG00000004989) #13	Cst12 (ENSRNOG00000004946) #14	LOC257643 (ENSRNOG00000004858) #15	Cst11 (ENSRNOG00000004808) #16	Cstl1 (ENSRNOG00000004779) #17	Napb (ENSRNOG00000004753) #18	Gzf1 (ENSRNOG00000004735) #19	Nxt1 (ENSRNOG00000004700) #21	Cd93 (ENSRNOG00000024799) #22	Thbd (ENSRNOG00000004687) #23	Sstr4 (ENSRNOG00000004641) #24	Foxa2 (ENSRNOG00000013133) #26	Pax1 (ENSRNOG00000024882) #28	Nkx2-2 (ENSRNOG00000012728) #29	Nkx2-4 (ENSRNOG00000012647) #30	Xrn2 (ENSRNOG00000011785) #31	Kiz (ENSRNOG00000025141) #32	ENSRNOG00000070752	Ralgapa2 (ENSRNOG00000036964) #34	Insm1 (ENSRNOG00000068937) #35	AABR07054096.1 (ENSRNOG00000011028) #36	Crnkl1 (ENSRNOG00000010587)	Naa20 (ENSRNOG00000010523)	Rin2 (ENSRNOG00000010131)
Upper Galilee mountains blind mole rat	MODERN SPECIES	353											Cst11 (ENSNGAG00000023054) #16	Cstl1 (ENSNGAG00000023212) #17	Napb (ENSNGAG00000023681) #18	Gzf1 (ENSNGAG00000024012) #19	Nxt1 (ENSNGAG00000000803) #21	Cd93 (ENSNGAG00000013591) #22	Sstr4 (ENSNGAG00000012473) #24
Lesser Egyptian jerboa	MODERN SPECIES	159						Cst3 (ENSJJAG00000013565) #8	Cst9 (ENSJJAG00000013510) #10	Cst13 (ENSJJAG00000013369) #12	Cst8 (ENSJJAG00000013212) #13	Cst12 (ENSJJAG00000012500) #14	Cstdc1 (ENSJJAG00000012315) #15	Cstl1 (ENSJJAG00000011653) #17	Napb (ENSJJAG00000010872) #18	Gzf1 (ENSJJAG00000008172) #19	ENSJJAG00000012022 #21	Cd93 (ENSJJAG00000007591) #22	Sstr4 (ENSJJAG00000023336) #24	Foxa2 (ENSJJAG00000023228) #26	Pax1 (ENSJJAG00000023177) #28	Nkx2-2 (ENSJJAG00000022426) #29	Nkx2-4 (ENSJJAG00000022335) #30	Xrn2 (ENSJJAG00000022128) #31	Kiz (ENSJJAG00000021546) #32	ENSJJAG00000020834	ENSJJAG00000020710 #34	ENSJJAG00000020467 #34	Insm1 (ENSJJAG00000020276) #35	Cfap61 (ENSJJAG00000018922) #36	Crnkl1 (ENSJJAG00000016926)	Naa20 (ENSJJAG00000016004)	ENSJJAG00000015745
Kangaroo rat	MODERN SPECIES	418	Pygb (ENSDORG00000007176)	Entpd6 (ENSDORG00000007175)	Vsx1 (ENSDORG00000005490)	Acss1 (ENSDORG00000004006)	Apmap (ENSDORG00000025391)	Cst7 (ENSDORG00000005298)	Syndig1 (ENSDORG00000003111)	ENSDORG00000008948 ##8	Cst3 (ENSDORG00000027673) #8	Cst13 (ENSDORG00000027228) #12	Cst8 (ENSDORG00000011859) #13	Cst12 (ENSDORG00000023744) #14	Napb (ENSDORG00000011856) #18	Gzf1 (ENSDORG00000011855) #19	Nxt1 (ENSDORG00000024690) #21	Cd93 (ENSDORG00000028704) #22	Sstr4 (ENSDORG00000010486) #24	Foxa2 (ENSDORG00000027269) #26	Pax1 (ENSDORG00000016051) #28	Nkx2-2 (ENSDORG00000007972) #29	Nkx2-4 (ENSDORG00000023542) #30	Xrn2 (ENSDORG00000005434) #31	ENSDORG00000024554 #34	ENSDORG00000025962 #34	Insm1 (ENSDORG00000009864) #35	ENSDORG00000000395	ENSDORG00000029623 #36	ENSDORG00000024717 #36	ENSDORG00000000394	Naa20 (ENSDORG00000028339)	Rin2 (ENSDORG00000000392)
Lagomorpha	ANCESTRAL SPECIES	57							ENSGT00940000154755.c.a #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.B #15	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00390000014861
Rabbit	MODERN SPECIES	15	ENSOCUG00000008071 #8	ENSOCUG00000036359	ENSOCUG00000032386	ENSOCUG00000021033 #11	ENSOCUG00000024585 #11	ENSOCUG00000029526 #11	ENSOCUG00000026263 #12	CST8 (ENSOCUG00000024979) #13	ENSOCUG00000027150 #15	CSTL1 (ENSOCUG00000024430) #17	ENSOCUG00000025538	NAPB (ENSOCUG00000009263) #18	ENSOCUG00000025214 #19	NXT1 (ENSOCUG00000025924) #21	ENSOCUG00000024138	CD93 (ENSOCUG00000014812) #22	FOXA2 (ENSOCUG00000007368) #26	PAX1 (ENSOCUG00000003276) #28	NKX2-2 (ENSOCUG00000007166) #29	ENSOCUG00000024195	XRN2 (ENSOCUG00000013468) #31	KIZ (ENSOCUG00000013848) #32	RALGAPA2 (ENSOCUG00000017951) #34	CFAP61 (ENSOCUG00000015506) #36	CRNKL1 (ENSOCUG00000015484)	NAA20 (ENSOCUG00000015481)	RIN2 (ENSOCUG00000015450)	SLC24A3 (ENSOCUG00000009833)	ENSOCUG00000035674	SCP2D1 (ENSOCUG00000010991)	DTD1 (ENSOCUG00000010988)
Pika	MODERN SPECIES	6732															NXT1 (ENSOPRG00000006167) #21	CD93 (ENSOPRG00000006161) #22	FOXA2 (ENSOPRG00000006139) #26
Tree shrew	MODERN SPECIES	1130																CD93 (ENSTBEG00000014371) #22
Primates	ANCESTRAL SPECIES	17	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000164098 #9	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755.c.b ##8	ENSGT00940000154755.c.a #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000164098 #9	ENSGT00940000162294 #13	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Mouse lemur	MODERN SPECIES	9	VSX1 (ENSMICG00000002047)	ACSS1 (ENSMICG00000002040)	APMAP (ENSMICG00000002038)	CST7 (ENSMICG00000002037)	SYNDIG1 (ENSMICG00000027578)	ENSMICG00000032368	ENSMICG00000043235 ##8	ENSMICG00000004617 #8	CST9 (ENSMICG00000047052) #9	CST8 (ENSMICG00000017905) #13	CST11 (ENSMICG00000017904) #16	CSTL1 (ENSMICG00000017903) #17	NAPB (ENSMICG00000017902) #18	GZF1 (ENSMICG00000046070) #19	NXT1 (ENSMICG00000044853) #21	CD93 (ENSMICG00000017898) #22	FOXA2 (ENSMICG00000030588) #26	PAX1 (ENSMICG00000016968) #28	NKX2-2 (ENSMICG00000045009) #29	NKX2-4 (ENSMICG00000032695) #30	XRN2 (ENSMICG00000008126) #31	KIZ (ENSMICG00000008114) #32	RALGAPA2 (ENSMICG00000006077) #34	INSM1 (ENSMICG00000037992) #35	CFAP61 (ENSMICG00000006057) #36	CRNKL1 (ENSMICG00000006048)	ENSMICG00000006044	RIN2 (ENSMICG00000006035)	SLC24A3 (ENSMICG00000006014)	DTD1 (ENSMICG00000010771)	ENSMICG00000010750
Lemuriformes_a	ANCESTRAL SPECIES	137					ENSGT00940000154755.c.a #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000164098 #9	ENSGT00940000162294 #13	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Coquerels sifaka	MODERN SPECIES	560						ENSPCOG00000018222	ENSPCOG00000001285	CST3 (ENSPCOG00000027602) #8	CST9L (ENSPCOG00000008034) #11	CST8 (ENSPCOG00000017881) #13	CST11 (ENSPCOG00000025724) #16	CSTL1 (ENSPCOG00000016553) #17	NAPB (ENSPCOG00000022495) #18	GZF1 (ENSPCOG00000024180) #19	NXT1 (ENSPCOG00000025624) #21	CD93 (ENSPCOG00000022300) #22	FOXA2 (ENSPCOG00000001633) #26	PAX1 (ENSPCOG00000027636) #28	NKX2-2 (ENSPCOG00000016151) #29
Greater bamboo lemur	MODERN SPECIES	878							ENSPSMG00000008949 #11	ENSPSMG00000008941 #12	CST8 (ENSPSMG00000008931) #13	ENSPSMG00000008923 #15	CST11 (ENSPSMG00000008919) #16	CSTL1 (ENSPSMG00000008917) #17	NAPB (ENSPSMG00000008819) #18	GZF1 (ENSPSMG00000008681) #19	NXT1 (ENSPSMG00000008668) #21	CD93 (ENSPSMG00000008660) #22	THBD (ENSPSMG00000008649) #23	SSTR4 (ENSPSMG00000008634) #24	FOXA2 (ENSPSMG00000008622) #26	PAX1 (ENSPSMG00000008610) #28	NKX2-2 (ENSPSMG00000008596) #29	NKX2-4 (ENSPSMG00000008590) #30	XRN2 (ENSPSMG00000008572) #31	KIZ (ENSPSMG00000008514) #32	ENSPSMG00000008491	RALGAPA2 (ENSPSMG00000008474) #34	INSM1 (ENSPSMG00000008427) #35
Bushbaby	MODERN SPECIES	251													NAPB (ENSOGAG00000012607) #18	GZF1 (ENSOGAG00000028389) #19	NXT1 (ENSOGAG00000000717) #21	CD93 (ENSOGAG00000017109) #22	THBD (ENSOGAG00000026061) #23	SSTR4 (ENSOGAG00000017105) #24	ENSOGAG00000025509	FOXA2 (ENSOGAG00000033297) #26	PAX1 (ENSOGAG00000033162) #28	NKX2-2 (ENSOGAG00000029474) #29	ENSOGAG00000025951	NKX2-4 (ENSOGAG00000024342) #30	XRN2 (ENSOGAG00000001068) #31	KIZ (ENSOGAG00000010591) #32	RALGAPA2 (ENSOGAG00000011557) #34	INSM1 (ENSOGAG00000034802) #35	ENSOGAG00000031837	CFAP61 (ENSOGAG00000011546) #36	CRNKL1 (ENSOGAG00000011544)
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Tarsier	MODERN SPECIES	4780										CST9 (ENSTSYG00000029266) #9	CST8 (ENSTSYG00000000658) #13	CST11 (ENSTSYG00000000187) #16	NAPB (ENSTSYG00000008750) #18	GZF1 (ENSTSYG00000028054) #19	NXT1 (ENSTSYG00000007592) #21	CD93 (ENSTSYG00000006459) #22	SSTR4 (ENSTSYG00000000585) #24
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000164560	ENSGT00940000163410	ENSGT00860000135650	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000163410.a.a	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Hominidae	ANCESTRAL SPECIES	18	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00910000148254	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931
Gorilla	MODERN SPECIES	444															ENSGGOG00000042714	CD93 (ENSGGOG00000044219) #22
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00910000148254	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931
Human	MODERN SPECIES	12	SYNDIG1 (ENSG00000101463)	GGTLC1 (ENSG00000149435)	CST5 (ENSG00000170367)	CST2 (ENSG00000170369)	CST1 (ENSG00000170373)	CST4 (ENSG00000101441)	CST3 (ENSG00000101439) ##8	CST9 (ENSG00000173335) #9	CST9L (ENSG00000101435) #11	CST8 (ENSG00000125815) #13	CST11 (ENSG00000125831) #16	CSTL1 (ENSG00000125823) #17	NAPB (ENSG00000125814) #18	GZF1 (ENSG00000125812) #19	NXT1 (ENSG00000132661) #21	CD93 (ENSG00000125810) #22	THBD (ENSG00000178726) #23	SSTR4 (ENSG00000132671) #24	FOXA2 (ENSG00000125798) #26	PAX1 (ENSG00000125813) #28	NKX2-2 (ENSG00000125820) #29	NKX2-4 (ENSG00000125816) #30	XRN2 (ENSG00000088930) #31	KIZ (ENSG00000088970) #32	RALGAPA2 (ENSG00000188559) #34	INSM1 (ENSG00000173404) #35	CFAP61 (ENSG00000089101) #36	CRNKL1 (ENSG00000101343)	NAA20 (ENSG00000173418)	RIN2 (ENSG00000132669)	SLC24A3 (ENSG00000185052)
Pan	ANCESTRAL SPECIES	15	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00910000148254	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046
Bonobo	MODERN SPECIES	11	ENSPPAG00000038530	CST4 (ENSPPAG00000035722)	CST3 (ENSPPAG00000041092) ##8	CST9 (ENSPPAG00000037364) #9	CST9L (ENSPPAG00000033681) #11	ENSPPAG00000035983	ENSPPAG00000039408 #12	CST8 (ENSPPAG00000037606) #13	ENSPPAG00000034245 #14	CST11 (ENSPPAG00000025372) #16	CSTL1 (ENSPPAG00000038564) #17	NAPB (ENSPPAG00000043876) #18	GZF1 (ENSPPAG00000028487) #19	NXT1 (ENSPPAG00000020479) #21	ENSPPAG00000024534	CD93 (ENSPPAG00000040099) #22	THBD (ENSPPAG00000018179) #23	SSTR4 (ENSPPAG00000036986) #24	ENSPPAG00000031368 #26	ENSPPAG00000024066	ENSPPAG00000043307	PAX1 (ENSPPAG00000035911) #28	NKX2-2 (ENSPPAG00000039042) #29	ENSPPAG00000037349	XRN2 (ENSPPAG00000033549) #31	KIZ (ENSPPAG00000031020) #32	RALGAPA2 (ENSPPAG00000039422) #34	ENSPPAG00000036172 #36	CRNKL1 (ENSPPAG00000027847)	NAA20 (ENSPPAG00000016439)	RIN2 (ENSPPAG00000037433)
Chimpanzee	MODERN SPECIES	11	ENSPTRG00000049771	CST1 (ENSPTRG00000013329)	CST3 (ENSPTRG00000046564) ##8	CST9 (ENSPTRG00000013326) #9	CST9L (ENSPTRG00000013325) #11	ENSPTRG00000047084	ENSPTRG00000050976 #12	CST8 (ENSPTRG00000013324) #13	ENSPTRG00000045117 #14	CST11 (ENSPTRG00000013323) #16	CSTL1 (ENSPTRG00000045776) #17	NAPB (ENSPTRG00000013321) #18	GZF1 (ENSPTRG00000013320) #19	NXT1 (ENSPTRG00000013319) #21	ENSPTRG00000046209	CD93 (ENSPTRG00000013318) #22	THBD (ENSPTRG00000013317) #23	SSTR4 (ENSPTRG00000013316) #24	FOXA2 (ENSPTRG00000048023) #26	ENSPTRG00000045139	ENSPTRG00000044291	PAX1 (ENSPTRG00000013311) #28	NKX2-2 (ENSPTRG00000013310) #29	NKX2-4 (ENSPTRG00000013309) #30	ENSPTRG00000047508	XRN2 (ENSPTRG00000013308) #31	ENSPTRG00000044546	KIZ (ENSPTRG00000046348) #32	RALGAPA2 (ENSPTRG00000013306) #34	CFAP61 (ENSPTRG00000013301) #36	CRNKL1 (ENSPTRG00000030609)
Orangutan	MODERN SPECIES	11	CST4 (ENSPPYG00000011266)	ENSPPYG00000039032	CST3 (ENSPPYG00000010776) ##8	CST9 (ENSPPYG00000010775) #9	CST9L (ENSPPYG00000010773) #11	ENSPPYG00000010772	ENSPPYG00000010771 #12	CST8 (ENSPPYG00000010770) #13	ENSPPYG00000037632 #14	CST11 (ENSPPYG00000010769) #16	CSTL1 (ENSPPYG00000010768) #17	NAPB (ENSPPYG00000010767) #18	GZF1 (ENSPPYG00000010766) #19	NXT1 (ENSPPYG00000010765) #21	ENSPPYG00000010764	CD93 (ENSPPYG00000010763) #22	THBD (ENSPPYG00000010762) #23	SSTR4 (ENSPPYG00000010761) #24	FOXA2 (ENSPPYG00000040463) #26	PAX1 (ENSPPYG00000010758) #28	NKX2-2 (ENSPPYG00000010757) #29	NKX2-4 (ENSPPYG00000010756) #30	XRN2 (ENSPPYG00000010755) #31	KIZ (ENSPPYG00000010754) #32	RALGAPA2 (ENSPPYG00000010751) #34	INSM1 (ENSPPYG00000010750) #35	CFAP61 (ENSPPYG00000010748) #36	CRNKL1 (ENSPPYG00000010747)	NAA20 (ENSPPYG00000010746)	RIN2 (ENSPPYG00000010745)	SLC24A3 (ENSPPYG00000010743)
Gibbon	MODERN SPECIES	3	ACSS1 (ENSNLEG00000015554)	APMAP (ENSNLEG00000032557)	CST7 (ENSNLEG00000015525)	SYNDIG1 (ENSNLEG00000015521)	CST5 (ENSNLEG00000015517)	CST2 (ENSNLEG00000036132)	CST3 (ENSNLEG00000035405) ##8	CST9 (ENSNLEG00000011616) #9	CST8 (ENSNLEG00000011607) #13	ENSNLEG00000033018 #14	CST11 (ENSNLEG00000011603) #16	CSTL1 (ENSNLEG00000011597) #17	NAPB (ENSNLEG00000027099) #18	GZF1 (ENSNLEG00000011565) #19	ENSNLEG00000033556	CD93 (ENSNLEG00000011559) #22	THBD (ENSNLEG00000011558) #23	SSTR4 (ENSNLEG00000018627) #24	ENSNLEG00000031709	ENSNLEG00000031487 #26	PAX1 (ENSNLEG00000010049) #28	NKX2-2 (ENSNLEG00000010048) #29	ENSNLEG00000010047 #30	XRN2 (ENSNLEG00000009991) #31	KIZ (ENSNLEG00000009954) #32	ENSNLEG00000033115	RALGAPA2 (ENSNLEG00000009931) #34	CFAP61 (ENSNLEG00000009893) #36	ENSNLEG00000009862	NAA20 (ENSNLEG00000028442)	RIN2 (ENSNLEG00000009844)
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000164560	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000164560	ENSGT00940000164098.a.a #9	ENSGT00940000164098.a.b #9	ENSGT00940000161877 #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000161877.h #11	ENSGT00940000164098.a.b #9	ENSGT00860000135650.a	ENSGT00940000154755.d ##8	ENSGT00940000163410	ENSGT00940000164098.a.a #9	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000154755.d ##8	ENSGT00860000135650.a	ENSGT00940000163410	ENSGT00940000164098.a.a #9	ENSGT00940000161877.g.b #11	ENSGT00940000166721	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046
Pig-tailed macaque	MODERN SPECIES	130	CST5 (ENSMNEG00000039359)	CST9L (ENSMNEG00000032753) #11	ENSMNEG00000044989	CST3 (ENSMNEG00000032382) ##8	ENSMNEG00000039431	ENSMNEG00000039062	CST9 (ENSMNEG00000039807) #9	CST8 (ENSMNEG00000037697) #13	ENSMNEG00000032864 #14	CST11 (ENSMNEG00000041474) #16	CSTL1 (ENSMNEG00000044944) #17	NAPB (ENSMNEG00000036841) #18	GZF1 (ENSMNEG00000033117) #19	NXT1 (ENSMNEG00000027745) #21	ENSMNEG00000024687	CD93 (ENSMNEG00000042460) #22	SSTR4 (ENSMNEG00000038323) #24	FOXA2 (ENSMNEG00000011763) #26	ENSMNEG00000028347	PAX1 (ENSMNEG00000040896) #28	NKX2-2 (ENSMNEG00000045238) #29	NKX2-4 (ENSMNEG00000028280) #30	XRN2 (ENSMNEG00000040626) #31	KIZ (ENSMNEG00000028617) #32	ENSMNEG00000039122	RALGAPA2 (ENSMNEG00000033398) #34	INSM1 (ENSMNEG00000029140) #35	CFAP61 (ENSMNEG00000036910) #36	CRNKL1 (ENSMNEG00000037490)	NAA20 (ENSMNEG00000033202)	RIN2 (ENSMNEG00000005068)
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00940000163410.c	ENSGT00940000154755.d ##8	ENSGT00860000135650.a	ENSGT00940000163410.d	ENSGT00940000164098.a.a #9	ENSGT00940000166721.a	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Rhesus	MODERN SPECIES	1	CST9L (ENSMMUG00000045312) #11	ENSMMUG00000063629	ENSMMUG00000050726	CST3 (ENSMMUG00000050596) ##8	ENSMMUG00000046980	CST9 (ENSMMUG00000039259) #9	ENSMMUG00000063687	ENSMMUG00000059402 #12	CST8 (ENSMMUG00000016489) #13	ENSMMUG00000016490 #14	CST11 (ENSMMUG00000022393) #16	CSTL1 (ENSMMUG00000055975) #17	NAPB (ENSMMUG00000022388) #18	GZF1 (ENSMMUG00000022387) #19	NXT1 (ENSMMUG00000022386) #21	CD93 (ENSMMUG00000016813) #22	THBD (ENSMMUG00000016814) #23	SSTR4 (ENSMMUG00000016815) #24	FOXA2 (ENSMMUG00000010410) #26	PAX1 (ENSMMUG00000019409) #28	ENSMMUG00000056728 #29	NKX2-4 (ENSMMUG00000011409) #30	XRN2 (ENSMMUG00000011405) #31	KIZ (ENSMMUG00000002060) #32	RALGAPA2 (ENSMMUG00000018371) #34	INSM1 (ENSMMUG00000039294) #35	CFAP61 (ENSMMUG00000042668) #36	CRNKL1 (ENSMMUG00000007709)	NAA20 (ENSMMUG00000007708)	RIN2 (ENSMMUG00000010114)	ENSMMUG00000051129
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000032358	CST3 (ENSMFAG00000062094) ##8	ENSMFAG00000001311	ENSMFAG00000051852 #9	ENSMFAG00000055858	ENSMFAG00000061186 #12	CST8 (ENSMFAG00000033001) #13	ENSMFAG00000032810 #14	CST11 (ENSMFAG00000038093) #16	CSTL1 (ENSMFAG00000057818) #17	NAPB (ENSMFAG00000012865) #18	ENSMFAG00000058516	GZF1 (ENSMFAG00000042408) #19	NXT1 (ENSMFAG00000065310) #21	ENSMFAG00000026040	CD93 (ENSMFAG00000043644) #22	SSTR4 (ENSMFAG00000017458) #24	FOXA2 (ENSMFAG00000047214) #26	ENSMFAG00000057184	PAX1 (ENSMFAG00000044435) #28	NKX2-2 (ENSMFAG00000044462) #29	XRN2 (ENSMFAG00000038122) #31	KIZ (ENSMFAG00000036086) #32	RALGAPA2 (ENSMFAG00000039275) #34	CFAP61 (ENSMFAG00000040250) #36	CRNKL1 (ENSMFAG00000039893)	RIN2 (ENSMFAG00000002995)	ENSMFAG00000065169	SLC24A3 (ENSMFAG00000037051)	SCP2D1 (ENSMFAG00000050245)	ENSMFAG00000034375
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00940000166721	ENSGT00940000161877.h #11	ENSGT00940000164098.a.b #9	ENSGT00940000154755.d ##8	ENSGT00860000135650.a	ENSGT00940000163410	ENSGT00940000164098.a.a #9	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046
Olive baboon	MODERN SPECIES	7	SYNDIG1 (ENSPANG00000047245)	ENSPANG00000048046	APMAP (ENSPANG00000051418)	CST7 (ENSPANG00000042634)	ACSS1 (ENSPANG00000017910)	VSX1 (ENSPANG00000021775)	ENTPD6 (ENSPANG00000026175)	ENSPANG00000045994	PYGB (ENSPANG00000024585)	ABHD12 (ENSPANG00000001312)	GINS1 (ENSPANG00000032488)	NINL (ENSPANG00000016039)	ENSPANG00000044377	NANP (ENSPANG00000031862)	ENSPANG00000048820	CD93 (ENSPANG00000018432) #22	THBD (ENSPANG00000046781) #23	SSTR4 (ENSPANG00000004090) #24	ENSPANG00000044373	FOXA2 (ENSPANG00000011847) #26	PAX1 (ENSPANG00000008282) #28	ENSPANG00000043988 #29	NKX2-4 (ENSPANG00000014236) #30	XRN2 (ENSPANG00000018088) #31	KIZ (ENSPANG00000025535) #32	ENSPANG00000050604	RALGAPA2 (ENSPANG00000018089) #34	ENSPANG00000046512	CFAP61 (ENSPANG00000024586) #36	ENSPANG00000045223	CRNKL1 (ENSPANG00000017420)
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00940000166721	ENSGT00940000161877.h #11	ENSGT00940000164098.a.b #9	ENSGT00940000163410	ENSGT00860000135650.a	ENSGT00940000154755.d ##8	ENSGT00940000164098.a.a #9	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Sooty mangabey	MODERN SPECIES	602	CST9L (ENSCATG00000032932) #11	ENSCATG00000035179 #9	ENSCATG00000035785	ENSCATG00000036042	CST3 (ENSCATG00000032215) ##8	ENSCATG00000043016	ENSCATG00000033110 #9	CST8 (ENSCATG00000033479) #13	ENSCATG00000043404 #14	CST11 (ENSCATG00000042927) #16	CSTL1 (ENSCATG00000031751) #17	NAPB (ENSCATG00000042262) #18	GZF1 (ENSCATG00000039279) #19	NXT1 (ENSCATG00000019026) #21	ENSCATG00000019258	CD93 (ENSCATG00000009216) #22	SSTR4 (ENSCATG00000019242) #24	FOXA2 (ENSCATG00000033454) #26	ENSCATG00000022190	PAX1 (ENSCATG00000029185) #28	NKX2-2 (ENSCATG00000041599) #29	NKX2-4 (ENSCATG00000023019) #30	XRN2 (ENSCATG00000040350) #31	KIZ (ENSCATG00000042535) #32	ENSCATG00000043761	RALGAPA2 (ENSCATG00000035357) #34	INSM1 (ENSCATG00000037816) #35	CFAP61 (ENSCATG00000043610) #36	CRNKL1 (ENSCATG00000034247)	NAA20 (ENSCATG00000027935)	RIN2 (ENSCATG00000042503)
Drill	MODERN SPECIES	1652															ENSMLEG00000027361	CD93 (ENSMLEG00000031294) #22	FOXA2 (ENSMLEG00000030410) #26
Vervet Monkey	MODERN SPECIES	11	IDH3B (ENSCSAG00000010969)	EBF4 (ENSCSAG00000010974)	CPXM1 (ENSCSAG00000010982)	SYNDIG1 (ENSCSAG00000010985)	CST5 (ENSCSAG00000010994)	ENSCSAG00000011001	ENSCSAG00000011012 #11	CST9L (ENSCSAG00000011017) #11	ENSCSAG00000011022 #9	ENSCSAG00000011025	CST3 (ENSCSAG00000011027) ##8	ENSCSAG00000011032	ENSCSAG00000011037	GZF1 (ENSCSAG00000011054) #19	NXT1 (ENSCSAG00000018678) #21	CD93 (ENSCSAG00000011058) #22	THBD (ENSCSAG00000018677) #23	SSTR4 (ENSCSAG00000018676) #24	FOXA2 (ENSCSAG00000011062) #26	PAX1 (ENSCSAG00000011068) #28	NKX2-2 (ENSCSAG00000011072) #29	NKX2-4 (ENSCSAG00000011080) #30	XRN2 (ENSCSAG00000011094) #31	KIZ (ENSCSAG00000011135) #32	RALGAPA2 (ENSCSAG00000011248) #34	INSM1 (ENSCSAG00000018675) #35	CFAP61 (ENSCSAG00000011382) #36	CRNKL1 (ENSCSAG00000011434)	NAA20 (ENSCSAG00000011440)	RIN2 (ENSCSAG00000011446)	ENSCSAG00000011450
Rhinopithecus	ANCESTRAL SPECIES	176								ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #26	ENSGT00950000183087.A.b.b	ENSGT00910000146941	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Golden snub-nosed monkey	MODERN SPECIES	1446									CST8 (ENSRROG00000030761) #13	ENSRROG00000037494 #14	CST11 (ENSRROG00000029851) #16	CSTL1 (ENSRROG00000032535) #17	NAPB (ENSRROG00000044287) #18	GZF1 (ENSRROG00000030533) #19	NXT1 (ENSRROG00000026657) #21	CD93 (ENSRROG00000012087) #22	FOXA2 (ENSRROG00000024272) #26	ENSRROG00000030464	ENSRROG00000040808	PAX1 (ENSRROG00000038854) #28	NKX2-2 (ENSRROG00000041150) #29	NKX2-4 (ENSRROG00000006364) #30	XRN2 (ENSRROG00000044400) #31	ENSRROG00000030791 #32	ENSRROG00000041676	RALGAPA2 (ENSRROG00000037467) #34	CFAP61 (ENSRROG00000040251) #36	CRNKL1 (ENSRROG00000040450)	NAA20 (ENSRROG00000036514)
Black snub-nosed monkey	MODERN SPECIES	2074								ENSRBIG00000033700 #12	CST8 (ENSRBIG00000044719) #13	ENSRBIG00000044901 #14	CST11 (ENSRBIG00000037634) #16	CSTL1 (ENSRBIG00000038994) #17	NAPB (ENSRBIG00000040673) #18	GZF1 (ENSRBIG00000028715) #19	NXT1 (ENSRBIG00000021433) #21	CD93 (ENSRBIG00000006468) #22	ENSRBIG00000025242	CDH8 (ENSRBIG00000030891)
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##8	ENSGT00940000164098 #9	ENSGT00940000161877 #11	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Capuchin	MODERN SPECIES	134	APMAP (ENSCCAG00000023838)	CST7 (ENSCCAG00000027578)	SYNDIG1 (ENSCCAG00000028638)	CST5 (ENSCCAG00000034182)	ENSCCAG00000033223	CST3 (ENSCCAG00000001843) ##8	CST9 (ENSCCAG00000024829) #9	CST9L (ENSCCAG00000026509) #11	CST8 (ENSCCAG00000024862) #13	ENSCCAG00000037786 #14	CST11 (ENSCCAG00000035766) #16	CSTL1 (ENSCCAG00000033212) #17	NAPB (ENSCCAG00000029344) #18	GZF1 (ENSCCAG00000035601) #19	NXT1 (ENSCCAG00000015478) #21	CD93 (ENSCCAG00000034013) #22	THBD (ENSCCAG00000020711) #23	SSTR4 (ENSCCAG00000019059) #24	FOXA2 (ENSCCAG00000027576) #26	PAX1 (ENSCCAG00000025569) #28	NKX2-2 (ENSCCAG00000035862) #29	NKX2-4 (ENSCCAG00000032197) #30	ENSCCAG00000036857 #31	KIZ (ENSCCAG00000031682) #32	RALGAPA2 (ENSCCAG00000028362) #34	INSM1 (ENSCCAG00000023181) #35	CFAP61 (ENSCCAG00000026777) #36	CRNKL1 (ENSCCAG00000027037)	NAA20 (ENSCCAG00000028274)
Bolivian squirrel monkey	MODERN SPECIES	211	APMAP (ENSSBOG00000035251)	CST7 (ENSSBOG00000021587)	SYNDIG1 (ENSSBOG00000023812)	CST5 (ENSSBOG00000022942)	ENSSBOG00000028716	CST3 (ENSSBOG00000030007) ##8	CST9 (ENSSBOG00000020759) #9	CST9L (ENSSBOG00000020799) #11	CST8 (ENSSBOG00000021877) #13	ENSSBOG00000025115 #14	CST11 (ENSSBOG00000025613) #16	CSTL1 (ENSSBOG00000006474) #17	NAPB (ENSSBOG00000019980) #18	GZF1 (ENSSBOG00000018893) #19	NXT1 (ENSSBOG00000036378) #21	CD93 (ENSSBOG00000018965) #22	SSTR4 (ENSSBOG00000013012) #24	FOXA2 (ENSSBOG00000024799) #26
Marmoset	MODERN SPECIES	17	CST7 (ENSCJAG00000048473)	APMAP (ENSCJAG00000085161)	SYNDIG1 (ENSCJAG00000046278)	CST5 (ENSCJAG00000037422)	ENSCJAG00000000676	CST3 (ENSCJAG00000036809) ##8	CST9 (ENSCJAG00000084681) #9	ENSCJAG00000078884 #12	CST8 (ENSCJAG00000000697) #13	ENSCJAG00000074097 #14	CST11 (ENSCJAG00000080392) #16	CSTL1 (ENSCJAG00000041540) #17	NAPB (ENSCJAG00000000712) #18	GZF1 (ENSCJAG00000000733) #19	NXT1 (ENSCJAG00000044836) #21	CD93 (ENSCJAG00000005796) #22	THBD (ENSCJAG00000005795) #23	FOXA2 (ENSCJAG00000005785) #26	ENSCJAG00000070048	ENSCJAG00000075555	PAX1 (ENSCJAG00000005773) #28	ENSCJAG00000070559	ENSCJAG00000076879	ENSCJAG00000051781 #29	ENSCJAG00000081459	NKX2-4 (ENSCJAG00000040336) #30	XRN2 (ENSCJAG00000005611) #31	KIZ (ENSCJAG00000005568) #32	RALGAPA2 (ENSCJAG00000005471) #34	INSM1 (ENSCJAG00000040556) #35	CFAP61 (ENSCJAG00000005444) #36
Mas night monkey	MODERN SPECIES	720																CD93 (ENSANAG00000031974) #22	SSTR4 (ENSANAG00000031033) #24	FOXA2 (ENSANAG00000000151) #26	PAX1 (ENSANAG00000031911) #28	NKX2-2 (ENSANAG00000031496) #29	NKX2-4 (ENSANAG00000025954) #30	XRN2 (ENSANAG00000020126) #31	KIZ (ENSANAG00000030324) #32	RALGAPA2 (ENSANAG00000035297) #34	ENSANAG00000025204	INSM1 (ENSANAG00000021754) #35	ENSANAG00000026688 #36	ENSANAG00000033104 #36	ENSANAG00000023984	CRNKL1 (ENSANAG00000024889)	ENSANAG00000021111
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Suina	ANCESTRAL SPECIES	9	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Chacoan peccary	MODERN SPECIES	801	VSX1 (ENSCWAG00000016751)	ACSS1 (ENSCWAG00000016802)	APMAP (ENSCWAG00000016906)	CST7 (ENSCWAG00000016930)	SYNDIG1 (ENSCWAG00000016959)	CST3 (ENSCWAG00000016979) #8	ENSCWAG00000017004 #11	ENSCWAG00000017060 #12	CST8 (ENSCWAG00000017086) #13	ENSCWAG00000017127	CST11 (ENSCWAG00000017158) #16	CSTL1 (ENSCWAG00000017189) #17	NAPB (ENSCWAG00000017225) #18	GZF1 (ENSCWAG00000017910) #19	NXT1 (ENSCWAG00000017956) #21	CD93 (ENSCWAG00000017965) #22	THBD (ENSCWAG00000017996) #23	FOXA2 (ENSCWAG00000007985) #26	PAX1 (ENSCWAG00000008052) #28	NKX2-2 (ENSCWAG00000008122) #29	NKX2-4 (ENSCWAG00000008162) #30	XRN2 (ENSCWAG00000008201) #31	KIZ (ENSCWAG00000008351) #32	RALGAPA2 (ENSCWAG00000008863) #34	INSM1 (ENSCWAG00000009223) #35	CFAP61 (ENSCWAG00000009261) #36	CRNKL1 (ENSCWAG00000009575)	NAA20 (ENSCWAG00000009645)	ENSCWAG00000009830	SLC24A3 (ENSCWAG00000009885)	SCP2D1 (ENSCWAG00000010002)
Pig	MODERN SPECIES	8	VSX1 (ENSSSCG00000023887)	ACSS1 (ENSSSCG00000007133)	APMAP (ENSSSCG00000036286)	CST7 (ENSSSCG00000007131)	SYNDIG1 (ENSSSCG00000007130)	CST3 (ENSSSCG00000037360) #8	CST9L (ENSSSCG00000029289) #11	ENSSSCG00000007125 #12	ENSSSCG00000007124 #13	ENSSSCG00000007123	CST11 (ENSSSCG00000007122) #16	CSTL1 (ENSSSCG00000007121) #17	NAPB (ENSSSCG00000031219) #18	GZF1 (ENSSSCG00000007117) #19	NXT1 (ENSSSCG00000007119) #21	CD93 (ENSSSCG00000007116) #22	THBD (ENSSSCG00000053422) #23	FOXA2 (ENSSSCG00000007114) #26	PAX1 (ENSSSCG00000007112) #28	NKX2-2 (ENSSSCG00000040017) #29	NKX2-4 (ENSSSCG00000007110) #30	XRN2 (ENSSSCG00000007109) #31	KIZ (ENSSSCG00000007108) #32	ENSSSCG00000048962	RALGAPA2 (ENSSSCG00000026506) #34	INSM1 (ENSSSCG00000062159) #35	CFAP61 (ENSSSCG00000038858) #36	CRNKL1 (ENSSSCG00000038587)	NAA20 (ENSSSCG00000028132)	ENSSSCG00000028004	SLC24A3 (ENSSSCG00000007100)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000161877.i #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Odontoceti	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931
Monodontidae	ANCESTRAL SPECIES	1	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931	ENSGT00550000075046
Narwhal	MODERN SPECIES	299	PYGB (ENSMMNG00015013588)	ENTPD6 (ENSMMNG00015013636)	VSX1 (ENSMMNG00015013692)	ACSS1 (ENSMMNG00015013713)	APMAP (ENSMMNG00015013737)	CST7 (ENSMMNG00015013746)	SYNDIG1 (ENSMMNG00015013754)	CST3 (ENSMMNG00015013767) #8	ENSMMNG00015013782 #11	ENSMMNG00015013807 #12	CST11 (ENSMMNG00015013816) #16	CSTL1 (ENSMMNG00015013827) #17	ENSMMNG00015013840 #18	GZF1 (ENSMMNG00015013857) #19	NXT1 (ENSMMNG00015013866) #21	CD93 (ENSMMNG00015013869) #22	THBD (ENSMMNG00015013881) #23	SSTR4 (ENSMMNG00015013888) #24	FOXA2 (ENSMMNG00015013909) #26	PAX1 (ENSMMNG00015013924) #28	NKX2-2 (ENSMMNG00015013937) #29	NKX2-4 (ENSMMNG00015013943) #30	XRN2 (ENSMMNG00015013954) #31	KIZ (ENSMMNG00015014032) #32	RALGAPA2 (ENSMMNG00015014137) #34	INSM1 (ENSMMNG00015014194) #35	CFAP61 (ENSMMNG00015014206) #36	ENSMMNG00015014237	ENSMMNG00015014247	CRNKL1 (ENSMMNG00015014256)	NAA20 (ENSMMNG00015014274)
Beluga whale	MODERN SPECIES	48	ENTPD6 (ENSDLEG00000004868)	VSX1 (ENSDLEG00000004879)	ACSS1 (ENSDLEG00000004910)	APMAP (ENSDLEG00000004961)	CST7 (ENSDLEG00000004970)	SYNDIG1 (ENSDLEG00000004982)	CST3 (ENSDLEG00000004985) #8	ENSDLEG00000005018 #11	ENSDLEG00000005035 #12	ENSDLEG00000005044 #15	CST11 (ENSDLEG00000005067) #16	CSTL1 (ENSDLEG00000005075) #17	ENSDLEG00000005080 #18	GZF1 (ENSDLEG00000005091) #19	NXT1 (ENSDLEG00000005096) #21	CD93 (ENSDLEG00000005100) #22	THBD (ENSDLEG00000005104) #23	SSTR4 (ENSDLEG00000005108) #24	FOXA2 (ENSDLEG00000005115) #26	PAX1 (ENSDLEG00000005123) #28	NKX2-2 (ENSDLEG00000005132) #29	NKX2-4 (ENSDLEG00000005154) #30	XRN2 (ENSDLEG00000005166) #31	KIZ (ENSDLEG00000005207) #32	RALGAPA2 (ENSDLEG00000005252) #34	CFAP61 (ENSDLEG00000005301) #36	ENSDLEG00000005319	ENSDLEG00000005324	CRNKL1 (ENSDLEG00000005333)	NAA20 (ENSDLEG00000005370)	RIN2 (ENSDLEG00000005378)
Vaquita	MODERN SPECIES	6	GINS1 (ENSPSNG00000009717)	ABHD12 (ENSPSNG00000009768)	PYGB (ENSPSNG00000009852)	ENTPD6 (ENSPSNG00000010051)	VSX1 (ENSPSNG00000010521)	ACSS1 (ENSPSNG00000010625)	APMAP (ENSPSNG00000010757)	CST7 (ENSPSNG00000010836)	SYNDIG1 (ENSPSNG00000010897)	CST3 (ENSPSNG00000010957) #8	ENSPSNG00000011009 #11	ENSPSNG00000011147 #12	ENSPSNG00000011208 #18	GZF1 (ENSPSNG00000011314) #19	NXT1 (ENSPSNG00000011355) #21	CD93 (ENSPSNG00000011407) #22	THBD (ENSPSNG00000011441) #23	SSTR4 (ENSPSNG00000011467) #24	FOXA2 (ENSPSNG00000004696) #26	PAX1 (ENSPSNG00000004773) #28	NKX2-2 (ENSPSNG00000004832) #29	NKX2-4 (ENSPSNG00000004868) #30	XRN2 (ENSPSNG00000004918) #31	KIZ (ENSPSNG00000005041) #32	ENSPSNG00000005168 #34	ENSPSNG00000005197 #34	INSM1 (ENSPSNG00000005223) #35	ENSPSNG00000005235	ENSPSNG00000005250 #36	ENSPSNG00000005292 #36	BLCAP (ENSPSNG00000005346)
Dolphin	MODERN SPECIES	4356																CD93 (ENSTTRG00000003436) #22	THBD (ENSTTRG00000003437) #23
Sperm whale	MODERN SPECIES	5	SCP2D1 (ENSPCTG00005011622)	SLC24A3 (ENSPCTG00005011433)	ENSPCTG00005011375	NAA20 (ENSPCTG00005011278)	CRNKL1 (ENSPCTG00005011230)	CFAP61 (ENSPCTG00005011086) #36	INSM1 (ENSPCTG00005011042) #35	RALGAPA2 (ENSPCTG00005010848) #34	KIZ (ENSPCTG00005010162) #32	XRN2 (ENSPCTG00005010006) #31	NKX2-4 (ENSPCTG00005009959) #30	NKX2-2 (ENSPCTG00005009931) #29	PAX1 (ENSPCTG00005009858) #28	FOXA2 (ENSPCTG00005009780) #26	SSTR4 (ENSPCTG00005009716) #24	CD93 (ENSPCTG00005009671) #22	CST3 (ENSPCTG00005009637) #8	ENSPCTG00005009585 #11	ENSPCTG00005009530 #11	ENSPCTG00005009487 #12	ENSPCTG00005009442 #15	CST11 (ENSPCTG00005009381) #16	CSTL1 (ENSPCTG00005009306) #17	ENSPCTG00005009273 #18	ENSPCTG00005009228	CST7 (ENSPCTG00005009166)	APMAP (ENSPCTG00005009088)	ENSPCTG00005009058	VSX1 (ENSPCTG00005008966)	ENTPD6 (ENSPCTG00005008559)	ABHD12 (ENSPCTG00005008481)
Blue whale	MODERN SPECIES	6	CST7 (ENSBMSG00010012340)	SYNDIG1 (ENSBMSG00010012350)	CST3 (ENSBMSG00010012360) #8	ENSBMSG00010012375 #11	ENSBMSG00010012390 #11	ENSBMSG00010012402 #12	CST8 (ENSBMSG00010012422) #13	ENSBMSG00010012475	ENSBMSG00010012491 #15	CST11 (ENSBMSG00010012502) #16	CSTL1 (ENSBMSG00010012521) #17	NAPB (ENSBMSG00010012544) #18	ENSBMSG00010012568 #19	ENSBMSG00010012580 #19	NXT1 (ENSBMSG00010012589) #21	CD93 (ENSBMSG00010012595) #22	THBD (ENSBMSG00010012612) #23	SSTR4 (ENSBMSG00010013828) #24	FOXA2 (ENSBMSG00010013859) #26	PAX1 (ENSBMSG00010013891) #28	NKX2-2 (ENSBMSG00010013921) #29	NKX2-4 (ENSBMSG00010013938) #30	XRN2 (ENSBMSG00010014058) #31	KIZ (ENSBMSG00010014281) #32	RALGAPA2 (ENSBMSG00010014396) #34	INSM1 (ENSBMSG00010014572) #35	CFAP61 (ENSBMSG00010014638) #36	CRNKL1 (ENSBMSG00010014711)	NAA20 (ENSBMSG00010014762)	RIN2 (ENSBMSG00010014833)	SLC24A3 (ENSBMSG00010014883)
Pecora	ANCESTRAL SPECIES	9	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000161877.i #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000024206	APMAP (ENSCHYG00000024095)	SYNDIG1 (ENSCHYG00000024042)	CST3 (ENSCHYG00000024014) #8	ENSCHYG00000023998 #11	ENSCHYG00000023958 #11	ENSCHYG00000023931 #12	ENSCHYG00000023900 #13	ENSCHYG00000023874	ENSCHYG00000023860 #15	ENSCHYG00000023824 #16	ENSCHYG00000023804 #17	NAPB (ENSCHYG00000023659) #18	GZF1 (ENSCHYG00000023598) #19	NXT1 (ENSCHYG00000023576) #21	CD93 (ENSCHYG00000023556) #22	THBD (ENSCHYG00000023542) #23	ENSCHYG00000023501	ENSCHYG00000023462	FOXA2 (ENSCHYG00000023420) #26	PAX1 (ENSCHYG00000023364) #28	ENSCHYG00000023344	NKX2-2 (ENSCHYG00000023304) #29	NKX2-4 (ENSCHYG00000023282) #30	XRN2 (ENSCHYG00000022819) #31	ENSCHYG00000022761	ENSCHYG00000022734	KIZ (ENSCHYG00000022176) #32	RALGAPA2 (ENSCHYG00000021147) #34	INSM1 (ENSCHYG00000021030) #35	CFAP61 (ENSCHYG00000020914) #36
Percora_a	ANCESTRAL SPECIES	10	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000161877.i #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Siberian musk deer	MODERN SPECIES	1194	ACSS1 (ENSMMSG00000018444)	APMAP (ENSMMSG00000018481)	CST7 (ENSMMSG00000018529)	SYNDIG1 (ENSMMSG00000018548)	CST3 (ENSMMSG00000018564) #8	ENSMMSG00000018584 #11	ENSMMSG00000018603 #12	CST8 (ENSMMSG00000018626) #13	ENSMMSG00000018653	ENSMMSG00000018676 #15	ENSMMSG00000018712 #16	CSTL1 (ENSMMSG00000018731) #17	NAPB (ENSMMSG00000018763) #18	GZF1 (ENSMMSG00000018836) #19	NXT1 (ENSMMSG00000018866) #21	CD93 (ENSMMSG00000018871) #22	THBD (ENSMMSG00000018897) #23	FOXA2 (ENSMMSG00000018910) #26	PAX1 (ENSMMSG00000018943) #28	NKX2-2 (ENSMMSG00000018973) #29	ENSMMSG00000018994	ENSMMSG00000019016	NKX2-4 (ENSMMSG00000019032) #30	XRN2 (ENSMMSG00000019064) #31	KIZ (ENSMMSG00000019151) #32	RALGAPA2 (ENSMMSG00000019313) #34	INSM1 (ENSMMSG00000019511) #35	ENSMMSG00000019522	ENSMMSG00000019535 #36	ENSMMSG00000019564 #36	CRNKL1 (ENSMMSG00000019594)
Bovidae	ANCESTRAL SPECIES	10	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000161877.i #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000161877.i #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00950000183014.f.a.h.u.a.a.b.a	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155114.wb.b	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT00390000001138.a.g
Rambouillet Sheep	MODERN SPECIES	4	SYNDIG1 (ENSOARG00020005336)	CST3 (ENSOARG00020005311) #8	ENSOARG00020005305	ENSOARG00020005290 #11	ENSOARG00020005269 #11	ENSOARG00020005253 #12	ENSOARG00020005233 #13	ENSOARG00020005223	ENSOARG00020005206 #15	ENSOARG00020005178 #16	CSTL1 (ENSOARG00020005157) #17	NAPB (ENSOARG00020004860) #18	GZF1 (ENSOARG00020004766) #19	NXT1 (ENSOARG00020004744) #21	ENSOARG00020004719	CD93 (ENSOARG00020004706) #22	ENSOARG00020004667	FOXA2 (ENSOARG00020004643) #26	ENSOARG00020004631	PAX1 (ENSOARG00020004579) #28	NKX2-2 (ENSOARG00020004554) #29	NKX2-4 (ENSOARG00020004533) #30	XRN2 (ENSOARG00020004498) #31	KIZ (ENSOARG00020004321) #32	RALGAPA2 (ENSOARG00020003837) #34	INSM1 (ENSOARG00020003800) #35	CFAP61 (ENSOARG00020003632) #36	CRNKL1 (ENSOARG00020003543)	NAA20 (ENSOARG00020003499)	RIN2 (ENSOARG00020003240)	ENSOARG00020023127
Goat	MODERN SPECIES	4	ACSS1 (ENSCHIG00000021744)	APMAP (ENSCHIG00000013115)	CST7 (ENSCHIG00000021898)	SYNDIG1 (ENSCHIG00000020378)	CST3 (ENSCHIG00000009090) #8	ENSCHIG00000022173 #11	ENSCHIG00000009930 #11	ENSCHIG00000021829 #12	ENSCHIG00000025947 #13	ENSCHIG00000017766	ENSCHIG00000003642 #15	ENSCHIG00000021813 #16	NAPB (ENSCHIG00000020249) #18	GZF1 (ENSCHIG00000008882) #19	ENSCHIG00000021979	CD93 (ENSCHIG00000009092) #22	THBD (ENSCHIG00000010975) #23	ENSCHIG00000022438	FOXA2 (ENSCHIG00000013879) #26	PAX1 (ENSCHIG00000025250) #28	NKX2-2 (ENSCHIG00000025252) #29	NKX2-4 (ENSCHIG00000017092) #30	ENSCHIG00000009213	XRN2 (ENSCHIG00000006921) #31	KIZ (ENSCHIG00000020496) #32	ENSCHIG00000001410	ENSCHIG00000005268	RALGAPA2 (ENSCHIG00000023081) #34	INSM1 (ENSCHIG00000002944) #35	CFAP61 (ENSCHIG00000022048) #36	CRNKL1 (ENSCHIG00000013171)
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT00390000001138.a.g.b
Bos	ANCESTRAL SPECIES	22	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554.jb #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137.d #28	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B.d	ENSGT00390000001138.a.g.b
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554.jb #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137.d #28	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B.d	ENSGT00960000190537
Wild yak	MODERN SPECIES	194																CD93 (ENSBMUG00000003082) #22	ENSBMUG00000003102 #23	FOXA2 (ENSBMUG00000003127) #26	PAX1 (ENSBMUG00000003140) #28	ENSBMUG00000003171	NKX2-2 (ENSBMUG00000003181) #29	XRN2 (ENSBMUG00000003295) #31	KIZ (ENSBMUG00000003411) #32	RALGAPA2 (ENSBMUG00000003599) #34	CFAP61 (ENSBMUG00000003762) #36	CRNKL1 (ENSBMUG00000003809)	NAA20 (ENSBMUG00000003835)	RIN2 (ENSBMUG00000003883)	ENSBMUG00000003910	SLC24A3 (ENSBMUG00000003930)	SCP2D1 (ENSBMUG00000003945)
Domestic yak	MODERN SPECIES	3	CST7 (ENSBGRG00000008014)	SYNDIG1 (ENSBGRG00000007905)	CST3 (ENSBGRG00000007838) #8	ENSBGRG00000007806 #11	ENSBGRG00000007774 #12	CST8 (ENSBGRG00000007704) #13	ENSBGRG00000007655	ENSBGRG00000007612 #15	ENSBGRG00000007520 #16	CSTL1 (ENSBGRG00000007456) #17	NAPB (ENSBGRG00000007201) #18	ENSBGRG00000007150 #19	ENSBGRG00000007097 #19	NXT1 (ENSBGRG00000007076) #21	ENSBGRG00000007043	CD93 (ENSBGRG00000006986) #22	THBD (ENSBGRG00000006963) #23	FOXA2 (ENSBGRG00000006927) #26	PAX1 (ENSBGRG00000006855) #28	ENSBGRG00000006824 #28	ENSBGRG00000006808	NKX2-2 (ENSBGRG00000006790) #29	NKX2-4 (ENSBGRG00000006760) #30	XRN2 (ENSBGRG00000006633) #31	KIZ (ENSBGRG00000006486) #32	ENSBGRG00000006333 #34	ENSBGRG00000006247 #34	INSM1 (ENSBGRG00000006219) #35	CFAP61 (ENSBGRG00000006111) #36	CRNKL1 (ENSBGRG00000006006)	NAA20 (ENSBGRG00000005893)
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877.j #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554.jb #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137.d #28	ENSGT00940000153362.a.bb.b.a	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B.d	ENSGT00390000001138.a.g.b
Hybrid Bos Indicus	MODERN SPECIES	4	ACSS1 (ENSBIXG00005011033)	APMAP (ENSBIXG00005010989)	CST7 (ENSBIXG00005000982)	SYNDIG1 (ENSBIXG00005010911)	ENSBIXG00005010878 #8	ENSBIXG00005010849 #11	ENSBIXG00005000954 #12	CST8 (ENSBIXG00005006779) #13	ENSBIXG00005010816	ENSBIXG00005000950 #15	ENSBIXG00005010800 #16	ENSBIXG00005000943 #17	NAPB (ENSBIXG00005000942) #18	GZF1 (ENSBIXG00005010698) #19	NXT1 (ENSBIXG00005010690) #21	CD93 (ENSBIXG00005010666) #22	ENSBIXG00005000916	THBD (ENSBIXG00005010640) #23	FOXA2 (ENSBIXG00005000913) #26	PAX1 (ENSBIXG00005010606) #28	ENSBIXG00005000694	ENSBIXG00005000714 #30	XRN2 (ENSBIXG00005006105) #31	ENSBIXG00005010385 #32	RALGAPA2 (ENSBIXG00005010322) #34	INSM1 (ENSBIXG00005010299) #35	CFAP61 (ENSBIXG00005010280) #36	CRNKL1 (ENSBIXG00005010247)	NAA20 (ENSBIXG00005010224)	RIN2 (ENSBIXG00005010179)	ENSBIXG00005010143
Cow	MODERN SPECIES	4	ENTPD6 (ENSBTAG00000009881)	VSX1 (ENSBTAG00000003335)	ACSS1 (ENSBTAG00000004281)	APMAP (ENSBTAG00000004278)	CST7 (ENSBTAG00000004273)	SYNDIG1 (ENSBTAG00000040147)	CST3 (ENSBTAG00000000598) #8	ENSBTAG00000032687 #11	ENSBTAG00000015949 #12	CST8 (ENSBTAG00000032694) #13	MGC133636 (ENSBTAG00000013416) #15	ENSBTAG00000027420	NAPB (ENSBTAG00000032704) #18	GZF1 (ENSBTAG00000008908) #19	NXT1 (ENSBTAG00000004993) #21	CD93 (ENSBTAG00000004207) #22	THBD (ENSBTAG00000048591) #23	FOXA2 (ENSBTAG00000012407) #26	PAX1 (ENSBTAG00000006742) #28	ENSBTAG00000035643	NKX2-2 (ENSBTAG00000010277) #29	NKX2-4 (ENSBTAG00000011312) #30	XRN2 (ENSBTAG00000011304) #31	KIZ (ENSBTAG00000020988) #32	RALGAPA2 (ENSBTAG00000014178) #34	CFAP61 (ENSBTAG00000009291) #36	CRNKL1 (ENSBTAG00000008472)	NAA20 (ENSBTAG00000001144)	RIN2 (ENSBTAG00000020382)	ENSBTAG00000032893	SLC24A3 (ENSBTAG00000011882)
American bison	MODERN SPECIES	2997	ENSBBBG00000022411	ACSS1 (ENSBBBG00000022438)	APMAP (ENSBBBG00000005932)	ENSBBBG00000022484	SYNDIG1 (ENSBBBG00000022490)	CST3 (ENSBBBG00000005938) #8	ENSBBBG00000022502 #11	ENSBBBG00000022506 #12	CST8 (ENSBBBG00000022516) #13	ENSBBBG00000005942	ENSBBBG00000022528 #15	ENSBBBG00000022535 #16	CSTL1 (ENSBBBG00000022543) #17	NAPB (ENSBBBG00000022632) #18	GZF1 (ENSBBBG00000022655) #19	CD93 (ENSBBBG00000005967) #22	THBD (ENSBBBG00000022684) #23	FOXA2 (ENSBBBG00000022700) #26	PAX1 (ENSBBBG00000022763) #28	ENSBBBG00000022780	ENSBBBG00000022786 #29	XRN2 (ENSBBBG00000022814) #31	KIZ (ENSBBBG00000022908) #32	RALGAPA2 (ENSBBBG00000022984) #34	ENSBBBG00000022996 #35	CFAP61 (ENSBBBG00000006046) #36	CRNKL1 (ENSBBBG00000008793)	NAA20 (ENSBBBG00000023097)	RIN2 (ENSBBBG00000023140)	ENSBBBG00000023147	SLC24A3 (ENSBBBG00000000461)
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00860000134050
Arabian camel	MODERN SPECIES	10	CST7 (ENSCDRG00005019480)	SYNDIG1 (ENSCDRG00005019502)	CST3 (ENSCDRG00005019511) #8	ENSCDRG00005019523 #11	ENSCDRG00005019533 #11	ENSCDRG00005019539 #11	ENSCDRG00005019553 #12	CST8 (ENSCDRG00005019565) #13	ENSCDRG00005019579	ENSCDRG00005019599 #15	ENSCDRG00005019617 #16	CSTL1 (ENSCDRG00005019624) #17	ENSCDRG00005019640 #18	GZF1 (ENSCDRG00005019674) #19	ENSCDRG00005019685 #21	CD93 (ENSCDRG00005019688) #22	ENSCDRG00005019694	FOXA2 (ENSCDRG00005019700) #26	PAX1 (ENSCDRG00005019717) #28	NKX2-2 (ENSCDRG00005019726) #29	XRN2 (ENSCDRG00005019738) #31	KIZ (ENSCDRG00005019794) #32	ENSCDRG00005020052 #34	ENSCDRG00005020129 #34	CFAP61 (ENSCDRG00005020211) #36	CRNKL1 (ENSCDRG00005020237)	NAA20 (ENSCDRG00005020249)	RIN2 (ENSCDRG00005020269)	SLC24A3 (ENSCDRG00005020283)	SCP2D1 (ENSCDRG00005020314)	DTD1 (ENSCDRG00005003474)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Carnivora	ANCESTRAL SPECIES	20	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410	ENSGT00940000154755.e.a #8	ENSGT00940000161877.n #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Caniformia	ANCESTRAL SPECIES		ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.e.a #8	ENSGT00940000161877.n #11	ENSGT00940000161877.m #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.e.a #8	ENSGT00940000161877.m.a #11	ENSGT00940000161877.n #11	ENSGT00940000161877.m.b #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Ursidae	ANCESTRAL SPECIES	14			ENSGT00940000154755.e.a #8	ENSGT00940000161877.m.a #11	ENSGT00940000161877.n #11	ENSGT00940000161877.m.b #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Ursus	ANCESTRAL SPECIES	191			ENSGT00940000154755.e.a #8	ENSGT00940000161877.m.a #11	ENSGT00940000161877.n #11	ENSGT00940000161877.m.b #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32
American black bear	MODERN SPECIES	4688																CD93 (ENSUAMG00000002525) #22	THBD (ENSUAMG00000002521) #23	SSTR4 (ENSUAMG00000002519) #24
Polar bear	MODERN SPECIES	300			ENSUMAG00000004197 #8	ENSUMAG00000004190 #11	ENSUMAG00000004185 #11	ENSUMAG00000004168 #11	ENSUMAG00000004162 #12	CST8 (ENSUMAG00000004155) #13	ENSUMAG00000004147	ENSUMAG00000004140 #15	CST11 (ENSUMAG00000004135) #16	CSTL1 (ENSUMAG00000004128) #17	NAPB (ENSUMAG00000004081) #18	GZF1 (ENSUMAG00000004065) #19	NXT1 (ENSUMAG00000004062) #21	CD93 (ENSUMAG00000004052) #22	SSTR4 (ENSUMAG00000004048) #24	PAX1 (ENSUMAG00000004035) #28	ENSUMAG00000004026 #29	XRN2 (ENSUMAG00000004012) #31	KIZ (ENSUMAG00000003912) #32	ENSUMAG00000003879 #34
Giant Panda	MODERN SPECIES	4						ENSAMEG00000030212 #11	ENSAMEG00000009914 #12	CST8 (ENSAMEG00000009906) #13	ENSAMEG00000009904	CST11 (ENSAMEG00000009897) #16	CSTL1 (ENSAMEG00000026681) #17	NAPB (ENSAMEG00000009863) #18	GZF1 (ENSAMEG00000009853) #19	NXT1 (ENSAMEG00000018729) #21	ENSAMEG00000024065	CD93 (ENSAMEG00000009849) #22	THBD (ENSAMEG00000019083) #23	SSTR4 (ENSAMEG00000019048) #24	FOXA2 (ENSAMEG00000015802) #26	ENSAMEG00000031412	PAX1 (ENSAMEG00000012642) #28	NKX2-2 (ENSAMEG00000029802) #29	NKX2-4 (ENSAMEG00000030670) #30	XRN2 (ENSAMEG00000012581) #31	KIZ (ENSAMEG00000012566) #32	RALGAPA2 (ENSAMEG00000000299) #34	CFAP61 (ENSAMEG00000000288) #36	CRNKL1 (ENSAMEG00000000270)	NAA20 (ENSAMEG00000000262)	RIN2 (ENSAMEG00000000240)	SLC24A3 (ENSAMEG00000000234)
Mustelinae	ANCESTRAL SPECIES	43	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.e.a #8	ENSGT00940000161877.m.a #11	ENSGT00940000161877.n #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Ferret	MODERN SPECIES	204	ACSS1 (ENSMPUG00000001109)	APMAP (ENSMPUG00000001112)	CST7 (ENSMPUG00000001114)	SYNDIG1 (ENSMPUG00000001115)	ENSMPUG00000001119	CST3 (ENSMPUG00000001122) #8	ENSMPUG00000001137 #11	ENSMPUG00000001138 #11	ENSMPUG00000001140	CST8 (ENSMPUG00000001143) #13	ENSMPUG00000001151	CST11 (ENSMPUG00000001154) #16	NAPB (ENSMPUG00000001158) #18	GZF1 (ENSMPUG00000001160) #19	NXT1 (ENSMPUG00000019260) #21	CD93 (ENSMPUG00000001163) #22	THBD (ENSMPUG00000019265) #23	SSTR4 (ENSMPUG00000019271) #24	FOXA2 (ENSMPUG00000001166) #26	ENSMPUG00000001167	PAX1 (ENSMPUG00000001187) #28	NKX2-2 (ENSMPUG00000001196) #29	XRN2 (ENSMPUG00000001198) #31	KIZ (ENSMPUG00000001201) #32	ENSMPUG00000019274	ENSMPUG00000001204	RALGAPA2 (ENSMPUG00000001210) #34	INSM1 (ENSMPUG00000001216) #35	CFAP61 (ENSMPUG00000001219) #36	CRNKL1 (ENSMPUG00000001226)	NAA20 (ENSMPUG00000001228)
American mink	MODERN SPECIES	503													CSTL1 (ENSNVIG00000020955) #17	NAPB (ENSNVIG00000020894) #18	GZF1 (ENSNVIG00000020871) #19	CD93 (ENSNVIG00000020862) #22	THBD (ENSNVIG00000020858) #23	SSTR4 (ENSNVIG00000020855) #24
Canidae	ANCESTRAL SPECIES	19							ENSGT00940000157363.b	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046.j.a	ENSGT00940000161804.d.a	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Canis_lupus	ANCESTRAL SPECIES	13							ENSGT00940000157363.b	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT01100000263605.j	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046.j.a	ENSGT00940000161804.d.a	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Dingo	MODERN SPECIES	343							ENSCAFG00020027456 #12	CST8 (ENSCAFG00020027457) #13	ENSCAFG00020027458	CST11 (ENSCAFG00020027459) #16	CSTL1 (ENSCAFG00020027460) #17	ENSCAFG00020027461 #18	ENSCAFG00020027463 #19	ENSCAFG00020027464 #19	ENSCAFG00020027465 #21	CD93 (ENSCAFG00020027467) #22	THBD (ENSCAFG00020027468) #23	ENSCAFG00020027470	ENSCAFG00020027471	FOXA2 (ENSCAFG00020027472) #26	PAX1 (ENSCAFG00020027475) #28	NKX2-2 (ENSCAFG00020027477) #29	NKX2-4 (ENSCAFG00020027478) #30	XRN2 (ENSCAFG00020027479) #31	KIZ (ENSCAFG00020027480) #32	RALGAPA2 (ENSCAFG00020027484) #34	CFAP61 (ENSCAFG00020027486) #36	ENSCAFG00020027487	CRNKL1 (ENSCAFG00020027488)	ENSCAFG00020027489	ENSCAFG00020027490
Dog	MODERN SPECIES	16							HUS1 (ENSCAFG00845026030)	ENSCAFG00845026576	ENSCAFG00845026609 #12	CST8 (ENSCAFG00845026649) #13	ENSCAFG00845026671	CST11 (ENSCAFG00845026760) #16	CSTL1 (ENSCAFG00845026794) #17	NAPB (ENSCAFG00845026852) #18	GZF1 (ENSCAFG00845027001) #19	CD93 (ENSCAFG00845027134) #22	THBD (ENSCAFG00845027195) #23	ENSCAFG00845027219	ENSCAFG00845027242	FOXA2 (ENSCAFG00845027259) #26	PAX1 (ENSCAFG00845027290) #28	NKX2-2 (ENSCAFG00845027437) #29	NKX2-4 (ENSCAFG00845027483) #30	XRN2 (ENSCAFG00845027569) #31	KIZ (ENSCAFG00845028046) #32	RALGAPA2 (ENSCAFG00845028444) #34	CFAP61 (ENSCAFG00845028852) #36	ENSCAFG00845028933	CRNKL1 (ENSCAFG00845028961)	NAA20 (ENSCAFG00845029048)	ENSCAFG00845029111
Red fox	MODERN SPECIES	506																CD93 (ENSVVUG00000003201) #22
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000163410.k	ENSGT00940000154755.e.a #8	ENSGT00940000161877.n #11	ENSGT00940000163249 #12	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Panthera	ANCESTRAL SPECIES	2	ENSGT00950000183147.B	ENSGT00940000154755.e.b #8	ENSGT00940000163410.k	ENSGT00940000154755.e.a #8	ENSGT00940000161877.n #11	ENSGT00940000163249 #12	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00950000183147.B	ENSGT00940000154755.e.b #8	ENSGT00940000163410.k	ENSGT00940000154755.e.a #8	ENSGT00940000161877.n #11	ENSGT00940000163249 #12	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046.k	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
leopard	MODERN SPECIES	39			SYNDIG1 (ENSPPRG00000024465)	ENSPPRG00000024520 #8	ENSPPRG00000016720 #8	ENSPPRG00000015946 #12	ENSPPRG00000015501	CST8 (ENSPPRG00000015009) #13	ENSPPRG00000014635	ENSPPRG00000013202 #15	CST11 (ENSPPRG00000011764) #16	ENSPPRG00000011394	NAPB (ENSPPRG00000010805) #18	GZF1 (ENSPPRG00000010040) #19	NXT1 (ENSPPRG00000021392) #21	CD93 (ENSPPRG00000009570) #22	THBD (ENSPPRG00000021378) #23	SSTR4 (ENSPPRG00000021367) #24	FOXA2 (ENSPPRG00000009206) #26	PAX1 (ENSPPRG00000009070) #28	NKX2-2 (ENSPPRG00000008916) #29	NKX2-4 (ENSPPRG00000008761) #30	XRN2 (ENSPPRG00000008732) #31	KIZ (ENSPPRG00000007745) #32	RALGAPA2 (ENSPPRG00000006401) #34	INSM1 (ENSPPRG00000021271) #35	CFAP61 (ENSPPRG00000004321) #36	CRNKL1 (ENSPPRG00000001955)	ENSPPRG00000001197	ENSPPRG00000000577	SLC24A3 (ENSPPRG00000022720)
lion	MODERN SPECIES	3	CST7 (ENSPLOG00000000513)	ENSPLOG00000000534	SYNDIG1 (ENSPLOG00000000543)	ENSPLOG00000000559	CST3 (ENSPLOG00000000650) #8	CST9L (ENSPLOG00000000670) #11	ENSPLOG00000000686 #12	CST8 (ENSPLOG00000000695) #13	ENSPLOG00000000715	ENSPLOG00000000735 #15	CST11 (ENSPLOG00000000758) #16	CSTL1 (ENSPLOG00000000776) #17	NAPB (ENSPLOG00000000809) #18	GZF1 (ENSPLOG00000000839) #19	NXT1 (ENSPLOG00000000844) #21	CD93 (ENSPLOG00000000855) #22	THBD (ENSPLOG00000000869) #23	SSTR4 (ENSPLOG00000000946) #24	FOXA2 (ENSPLOG00000000959) #26	PAX1 (ENSPLOG00000000971) #28	NKX2-2 (ENSPLOG00000000985) #29	NKX2-4 (ENSPLOG00000001002) #30	XRN2 (ENSPLOG00000001042) #31	KIZ (ENSPLOG00000001155) #32	RALGAPA2 (ENSPLOG00000001266) #34	INSM1 (ENSPLOG00000001312) #35	CFAP61 (ENSPLOG00000001356) #36	CRNKL1 (ENSPLOG00000001416)	NAA20 (ENSPLOG00000001447)	RIN2 (ENSPLOG00000001490)	SLC24A3 (ENSPLOG00000001538)
Tiger	MODERN SPECIES	535	APMAP (ENSPTIG00000009330)	CST7 (ENSPTIG00000009188)	SYNDIG1 (ENSPTIG00000008709)	ENSPTIG00000007645	ENSPTIG00000007325	CST9L (ENSPTIG00000007266) #11	ENSPTIG00000007155 #12	CST8 (ENSPTIG00000006377) #13	ENSPTIG00000005641	ENSPTIG00000005550 #15	CST11 (ENSPTIG00000003091) #16	ENSPTIG00000001355	NAPB (ENSPTIG00000019947) #18	GZF1 (ENSPTIG00000019328) #19	NXT1 (ENSPTIG00000003788) #21	CD93 (ENSPTIG00000018580) #22	SSTR4 (ENSPTIG00000003769) #24	PAX1 (ENSPTIG00000017141) #28	NKX2-2 (ENSPTIG00000016807) #29	XRN2 (ENSPTIG00000015683) #31	KIZ (ENSPTIG00000015123) #32	RALGAPA2 (ENSPTIG00000012682) #34	CFAP61 (ENSPTIG00000009217) #36	CRNKL1 (ENSPTIG00000007393)	NAA20 (ENSPTIG00000006328)	RIN2 (ENSPTIG00000003100)	SLC24A3 (ENSPTIG00000021465)	SCP2D1 (ENSPTIG00000002789)	DTD1 (ENSPTIG00000020971)	SEC23B (ENSPTIG00000020593)	RBBP9 (ENSPTIG00000020464)
Cat	MODERN SPECIES	2	CST7 (ENSFCAG00000014543)	SYNDIG1 (ENSFCAG00000033652)	ENSFCAG00000035754	CST3 (ENSFCAG00000038525) #8	ENSFCAG00000030881 #11	ENSFCAG00000027887 #12	ENSFCAG00000023071	CST8 (ENSFCAG00000023255) #13	ENSFCAG00000042989	ENSFCAG00000026179 #15	CST11 (ENSFCAG00000003949) #16	CSTL1 (ENSFCAG00000041684) #17	NAPB (ENSFCAG00000037279) #18	GZF1 (ENSFCAG00000006484) #19	NXT1 (ENSFCAG00000006482) #21	CD93 (ENSFCAG00000025238) #22	THBD (ENSFCAG00000011513) #23	SSTR4 (ENSFCAG00000022777) #24	FOXA2 (ENSFCAG00000012368) #26	PAX1 (ENSFCAG00000004293) #28	NKX2-2 (ENSFCAG00000008740) #29	NKX2-4 (ENSFCAG00000045261) #30	XRN2 (ENSFCAG00000007970) #31	KIZ (ENSFCAG00000007966) #32	RALGAPA2 (ENSFCAG00000028385) #34	INSM1 (ENSFCAG00000040680) #35	CFAP61 (ENSFCAG00000000715) #36	CRNKL1 (ENSFCAG00000000714)	NAA20 (ENSFCAG00000028113)	RIN2 (ENSFCAG00000014527)	SLC24A3 (ENSFCAG00000008015)
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Equus	ANCESTRAL SPECIES	8	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00510000047812.l	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Horse	MODERN SPECIES	14	ACSS1 (ENSECAG00000023870)	APMAP (ENSECAG00000014524)	CST7 (ENSECAG00000000268)	ENSECAG00000050617	SYNDIG1 (ENSECAG00000006421)	CST3 (ENSECAG00000038893) #8	ENSECAG00000045045 #12	CST9L (ENSECAG00000010654) #11	CST8 (ENSECAG00000029932) #13	ENSECAG00000014988 #15	CST11 (ENSECAG00000016342) #16	CSTL1 (ENSECAG00000019672) #17	NAPB (ENSECAG00000022016) #18	GZF1 (ENSECAG00000011343) #19	NXT1 (ENSECAG00000035032) #21	CD93 (ENSECAG00000016324) #22	THBD (ENSECAG00000005241) #23	FOXA2 (ENSECAG00000032004) #26	PAX1 (ENSECAG00000016945) #28	NKX2-2 (ENSECAG00000018977) #29	NKX2-4 (ENSECAG00000037105) #30	XRN2 (ENSECAG00000018988) #31	KIZ (ENSECAG00000016626) #32	ENSECAG00000036437	RALGAPA2 (ENSECAG00000019950) #34	INSM1 (ENSECAG00000037552) #35	CFAP61 (ENSECAG00000004364) #36	CRNKL1 (ENSECAG00000022215)	NAA20 (ENSECAG00000012609)	RIN2 (ENSECAG00000015381)	SLC24A3 (ENSECAG00000019334)
Donkey	MODERN SPECIES	6	ENSEASG00005030814	ACSS1 (ENSEASG00005002623)	APMAP (ENSEASG00005002617)	CST7 (ENSEASG00005029197)	ENSEASG00005002614	ENSEASG00005002598 #8	ENSEASG00005027176 #11	ENSEASG00005025391 #12	CST8 (ENSEASG00005030555) #13	ENSEASG00005031840	CST11 (ENSEASG00005002576) #16	CSTL1 (ENSEASG00005002572) #17	NAPB (ENSEASG00005002564) #18	GZF1 (ENSEASG00005002557) #19	NXT1 (ENSEASG00005033641) #21	CD93 (ENSEASG00005002547) #22	THBD (ENSEASG00005027531) #23	SSTR4 (ENSEASG00005002540) #24	FOXA2 (ENSEASG00005002535) #26	PAX1 (ENSEASG00005002521) #28	NKX2-2 (ENSEASG00005038540) #29	NKX2-4 (ENSEASG00005002501) #30	XRN2 (ENSEASG00005002484) #31	KIZ (ENSEASG00005002467) #32	ENSEASG00005002454	RALGAPA2 (ENSEASG00005002224) #34	INSM1 (ENSEASG00005002118) #35	CFAP61 (ENSEASG00005002079) #36	CRNKL1 (ENSEASG00005002072)	NAA20 (ENSEASG00005002069)	RIN2 (ENSEASG00005002067)
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000165454	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Greater horseshoe bat	MODERN SPECIES	15	ENTPD6 (ENSRFEG00010011594)	ENSRFEG00010011488	ABHD12 (ENSRFEG00010011429)	GINS1 (ENSRFEG00010011337)	NINL (ENSRFEG00010011279)	NANP (ENSRFEG00010011232)	CST3 (ENSRFEG00010011121) #8	CST9L (ENSRFEG00010011055) #11	ENSRFEG00010011001 #12	ENSRFEG00010010952	CST11 (ENSRFEG00010010901) #16	CSTL1 (ENSRFEG00010010843) #17	NAPB (ENSRFEG00010010719) #18	GZF1 (ENSRFEG00010010618) #19	NXT1 (ENSRFEG00010010600) #21	CD93 (ENSRFEG00010010553) #22	THBD (ENSRFEG00010010533) #23	ENSRFEG00010010499	ENSRFEG00010010431	FOXA2 (ENSRFEG00010010354) #26	ENSRFEG00010010271	PAX1 (ENSRFEG00010010205) #28	NKX2-2 (ENSRFEG00010010185) #29	NKX2-4 (ENSRFEG00010010146) #30	XRN2 (ENSRFEG00010010058) #31	ENSRFEG00010010021	KIZ (ENSRFEG00010009832) #32	ENSRFEG00010009788	RALGAPA2 (ENSRFEG00010009655) #34	INSM1 (ENSRFEG00010009617) #35	CFAP61 (ENSRFEG00010009533) #36
Microbat	MODERN SPECIES	1151	CST7 (ENSMLUG00000004912)	SYNDIG1 (ENSMLUG00000012716)	ENSMLUG00000011668	ENSMLUG00000026533	ENSMLUG00000010298	CST3 (ENSMLUG00000028312) #8	ENSMLUG00000007975 #11	ENSMLUG00000024267 #12	CST8 (ENSMLUG00000002227) #13	ENSMLUG00000028493	CST11 (ENSMLUG00000002218) #16	CSTL1 (ENSMLUG00000002210) #17	NAPB (ENSMLUG00000002203) #18	GZF1 (ENSMLUG00000002194) #19	NXT1 (ENSMLUG00000006881) #21	CD93 (ENSMLUG00000011185) #22	THBD (ENSMLUG00000011192) #23	FOXA2 (ENSMLUG00000025149) #26
Megabat	MODERN SPECIES	6108																CD93 (ENSPVAG00000003132) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156996 #22
Common shrew	MODERN SPECIES	8163																CD93 (ENSSARG00000002968) #22
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Xenarthra	ANCESTRAL SPECIES	526										ENSGT00940000162636.B #15	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24
Armadillo	MODERN SPECIES	3602							ENSDNOG00000031973	ENSDNOG00000031415 #15	CST11 (ENSDNOG00000018232) #16	CSTL1 (ENSDNOG00000001781) #17	NAPB (ENSDNOG00000047292) #18	GZF1 (ENSDNOG00000014290) #19	ENSDNOG00000040022 #21	NXT1 (ENSDNOG00000015112) #21	ENSDNOG00000044722	CD93 (ENSDNOG00000001591) #22	THBD (ENSDNOG00000015285) #23	SSTR4 (ENSDNOG00000038307) #24	ENSDNOG00000046682	FOXA2 (ENSDNOG00000006385) #26	ENSDNOG00000032532
Sloth	MODERN SPECIES	8365																ENSCHOG00000011843 #22
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755 #8	ENSGT00940000161877 #11	ENSGT00940000163249 #12	ENSGT00940000162294 #13	ENSGT00940000162636.A #14	ENSGT00910000144356 #16	ENSGT00900000141212 #17	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000162041.l #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Elephant	MODERN SPECIES	180	VSX1 (ENSLAFG00000018392)	ACSS1 (ENSLAFG00000011493)	APMAP (ENSLAFG00000011820)	CST7 (ENSLAFG00000022218)	SYNDIG1 (ENSLAFG00000013030)	CST3 (ENSLAFG00000015020) #8	ENSLAFG00000002805 #11	ENSLAFG00000006741 #12	CST8 (ENSLAFG00000002803) #13	ENSLAFG00000030756 #14	ENSLAFG00000008240 #16	CSTL1 (ENSLAFG00000008243) #17	NAPB (ENSLAFG00000002461) #18	GZF1 (ENSLAFG00000002458) #19	NXT1 (ENSLAFG00000029098) #21	CD93 (ENSLAFG00000027545) #22	THBD (ENSLAFG00000012832) #23	ENSLAFG00000032254 #24	FOXA2 (ENSLAFG00000026345) #26	ENSLAFG00000031871	PAX1 (ENSLAFG00000008908) #28	NKX2-2 (ENSLAFG00000002379) #29	ENSLAFG00000014638 #30	XRN2 (ENSLAFG00000014624) #31	KIZ (ENSLAFG00000002389) #32	ENSLAFG00000032497 #34	ENSLAFG00000011596 #34	INSM1 (ENSLAFG00000011594) #35	ENSLAFG00000029531	ENSLAFG00000028424 #36	ENSLAFG00000004520 #36
Hyrax	MODERN SPECIES	8469																CD93 (ENSPCAG00000003989) #22
Tenrec	MODERN SPECIES	10186																CD93 (ENSETEG00000008394) #22
Marsupialia	ANCESTRAL SPECIES	19	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b #8	ENSGT00940000163249 #12	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Marsupialia_b	ANCESTRAL SPECIES	9	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b #8	ENSGT00940000163249 #12	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B
Diprotodontia	ANCESTRAL SPECIES	2	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b #8	ENSGT00940000163249 #12	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B
Diprotodontia_a	ANCESTRAL SPECIES	2	ENSGT00390000003094	ENSGT00660000095541.a.a	ENSGT00390000013968	ENSGT00940000160517	ENSGT00950000183148.b.b	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00440000039984.a	ENSGT00940000160277	ENSGT00950000183147.B	ENSGT00940000154755.b #8	ENSGT00940000163249 #12	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT00550000074931.g	ENSGT00550000075046	ENSGT00940000154866.B
koala	MODERN SPECIES	1	ENSPCIG00000033046	ENSPCIG00000025179	VSX1 (ENSPCIG00000025170)	ACSS1 (ENSPCIG00000025166)	APMAP (ENSPCIG00000025164)	CST7 (ENSPCIG00000035164)	SYNDIG1 (ENSPCIG00000008651)	ENSPCIG00000008654	ENSPCIG00000036306 #8	ENSPCIG00000013810 #12	ENSPCIG00000013809	NAPB (ENSPCIG00000013805) #18	ENSPCIG00000031294 #19	ENSPCIG00000013803 #19	ENSPCIG00000013801	CD93 (ENSPCIG00000015492) #22	ENSPCIG00000015494	SSTR4 (ENSPCIG00000015498) #24	FOXA2 (ENSPCIG00000025918) #26	PAX1 (ENSPCIG00000031385) #28	NKX2-2 (ENSPCIG00000034162) #29	ENSPCIG00000031596	NKX2-4 (ENSPCIG00000024538) #30	XRN2 (ENSPCIG00000001237) #31	ENSPCIG00000001346 #34	ENSPCIG00000008868 #34	INSM1 (ENSPCIG00000025810) #35	ENSPCIG00000034193	CFAP61 (ENSPCIG00000025813) #36	CRNKL1 (ENSPCIG00000025825)	NAA20 (ENSPCIG00000025955)
Common wonbat	MODERN SPECIES	1073																CD93 (ENSVURG00010005436) #22	THBD (ENSVURG00010005445) #23	SSTR4 (ENSVURG00010005456) #24	FOXA2 (ENSVURG00010005464) #26	PAX1 (ENSVURG00010005488) #28	NKX2-2 (ENSVURG00010005501) #29	NKX2-4 (ENSVURG00010005513) #30	XRN2 (ENSVURG00010005531) #31	KIZ (ENSVURG00010005599) #32	ENSVURG00010005678	RALGAPA2 (ENSVURG00010005756) #34	INSM1 (ENSVURG00010005820) #35	ENSVURG00010005834	ENSVURG00010005838	ENSVURG00010005844 #36	ENSVURG00010005874 #36
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000017247	GINS1 (ENSSHAG00000017422)	ABHD12 (ENSSHAG00000017466)	PYGB (ENSSHAG00000017620)	ENTPD6 (ENSSHAG00000017761)	VSX1 (ENSSHAG00000027598)	ENSSHAG00000031963	ACSS1 (ENSSHAG00000004290)	APMAP (ENSSHAG00000002616)	ENSSHAG00000000722	SYNDIG1 (ENSSHAG00000026100)	ENSSHAG00000032132 #8	ENSSHAG00000031598 #8	NAPB (ENSSHAG00000022875) #18	ENSSHAG00000009367 #19	CD93 (ENSSHAG00000031195) #22	THBD (ENSSHAG00000028423) #23	SSTR4 (ENSSHAG00000012685) #24	FOXA2 (ENSSHAG00000014905) #26	PAX1 (ENSSHAG00000017556) #28	NKX2-2 (ENSSHAG00000004915) #29	NKX2-4 (ENSSHAG00000024664) #30	XRN2 (ENSSHAG00000023603) #31	KIZ (ENSSHAG00000027601) #32	RALGAPA2 (ENSSHAG00000011234) #34	CFAP61 (ENSSHAG00000013786) #36	ENSSHAG00000030457	ENSSHAG00000022346	ENSSHAG00000027541	ENSSHAG00000025214	RIN2 (ENSSHAG00000014834)
Opossum	MODERN SPECIES		ENSMODG00000006490	ENSMODG00000006443	ABHD12 (ENSMODG00000006439)	PYGB (ENSMODG00000006424)	ENTPD6 (ENSMODG00000006375)	VSX1 (ENSMODG00000006351)	ACSS1 (ENSMODG00000006345)	APMAP (ENSMODG00000006313)	ENSMODG00000006300	ENSMODG00000044809	SYNDIG1 (ENSMODG00000006293)	ENSMODG00000048042 #8	NAPB (ENSMODG00000006277) #18	GZF1 (ENSMODG00000006238) #19	ENSMODG00000044175 #19	CD93 (ENSMODG00000006221) #22	ENSMODG00000023139 #23	SSTR4 (ENSMODG00000023138) #24	FOXA2 (ENSMODG00000006213) #26	PAX1 (ENSMODG00000006198) #28	NKX2-2 (ENSMODG00000006177) #29	NKX2-4 (ENSMODG00000006170) #30	XRN2 (ENSMODG00000006163) #31	ENSMODG00000040034	KIZ (ENSMODG00000006125) #32	ENSMODG00000006089 #34	ENSMODG00000036552	ENSMODG00000050875	ENSMODG00000043419 #34	INSM1 (ENSMODG00000006031) #35	CFAP61 (ENSMODG00000005981) #36
Platypus	MODERN SPECIES		ENSOANG00000010714	ENSOANG00000039008	ENSOANG00000002187	KCNS3 (ENSOANG00000014360)	RDH14 (ENSOANG00000049985)	NT5C1B (ENSOANG00000007019)	OSR1 (ENSOANG00000045764)	ENSOANG00000007840	CST7 (ENSOANG00000042962)	SYNDIG1 (ENSOANG00000010870)	ENSOANG00000051113 #8	NAPB (ENSOANG00000000251) #18	ENSOANG00000045902	GZF1 (ENSOANG00000038746) #19	ENSOANG00000022376 #19	ENSOANG00000041257 #22	ENSOANG00000015171	SSTR4 (ENSOANG00000037977) #24	FOXA2 (ENSOANG00000015108) #26	PAX1 (ENSOANG00000002008) #28	ENSOANG00000047729 #29	NKX2-4 (ENSOANG00000048651) #30	XRN2 (ENSOANG00000015673) #31	ENSOANG00000002851 #32	RALGAPA2 (ENSOANG00000002499) #34	INSM1 (ENSOANG00000038669) #35	CFAP61 (ENSOANG00000046492) #36	CRNKL1 (ENSOANG00000031667)	NAA20 (ENSOANG00000036301)	RIN2 (ENSOANG00000002281)	SLC24A3 (ENSOANG00000015699)
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000156426	ENSGT00940000155428	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00400000024959	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000155428	ENSGT00940000160301	ENSGT00390000006458	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00400000024959	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00940000167996	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931
Cryptodira	ANCESTRAL SPECIES	56	ENSGT00940000155428	ENSGT00940000160301	ENSGT00390000006458	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000156426	ENSGT00940000155428.c	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000154755 #8	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000162003	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000014861
Emydidae	ANCESTRAL SPECIES	41	ENSGT00940000156426	ENSGT00940000155428.c	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000154755 #8	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000162003	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00960000189392	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000014861
Three-toed box turtle	MODERN SPECIES	62	HAO1 (ENSTMTG00000008067)	BMP2 (ENSTMTG00000008060)	ENSTMTG00000008054	FERMT1 (ENSTMTG00000015038)	LRRN4 (ENSTMTG00000014979)	CRLS1 (ENSTMTG00000014821)	MCM8 (ENSTMTG00000014785)	TRMT6 (ENSTMTG00000014766)	CHGB (ENSTMTG00000014744)	GPCPD1 (ENSTMTG00000014494)	ENSTMTG00000014445	NAPB (ENSTMTG00000014434) #18	ENSTMTG00000014423 #19	ENSTMTG00000014405 #19	ENSTMTG00000014388 #19	CD93 (ENSTMTG00000014376) #22	ENSTMTG00000014370	SSTR4 (ENSTMTG00000014358) #24	CST3 (ENSTMTG00000014349) #8	DSTN (ENSTMTG00000014338)	RRBP1 (ENSTMTG00000014302)	BANF2 (ENSTMTG00000014289)	SNX5 (ENSTMTG00000014229)	MGME1 (ENSTMTG00000014212)	OVOL2 (ENSTMTG00000014204)	ENSTMTG00000014188	ENSTMTG00000014174	KAT14 (ENSTMTG00000014155)	BIRC5 (ENSTMTG00000014090)	DZANK1 (ENSTMTG00000013988)	POLR3F (ENSTMTG00000013956)
painted turtle	MODERN SPECIES	12	TMX4 (ENSCPBG00000023390)	ENSCPBG00000023391	ENSCPBG00000023393	BMP2 (ENSCPBG00000023396)	FERMT1 (ENSCPBG00000023397)	LRRN4 (ENSCPBG00000023401)	CRLS1 (ENSCPBG00000023403)	MCM8 (ENSCPBG00000023404)	TRMT6 (ENSCPBG00000023406)	CHGB (ENSCPBG00000023407)	SHLD1 (ENSCPBG00000023409)	GPCPD1 (ENSCPBG00000023412)	NAPB (ENSCPBG00000023414) #18	GZF1 (ENSCPBG00000023415) #19	ENSCPBG00000023418 #19	CD93 (ENSCPBG00000023422) #22	ENSCPBG00000023423	SSTR4 (ENSCPBG00000023425) #24	ENSCPBG00000023428	CST3 (ENSCPBG00000023430) #8	DSTN (ENSCPBG00000023433)	RRBP1 (ENSCPBG00000023436)	BANF2 (ENSCPBG00000023445)	SNX5 (ENSCPBG00000023448)	MGME1 (ENSCPBG00000023450)	OVOL2 (ENSCPBG00000023454)	KAT14 (ENSCPBG00000023466)	BIRC5 (ENSCPBG00000023468)	DZANK1 (ENSCPBG00000023469)	POLR3F (ENSCPBG00000023473)	RBBP9 (ENSCPBG00000023475)
Testudinidae	ANCESTRAL SPECIES	6	ENSGT00940000155428.c	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT00390000014969	ENSGT00440000033970	ENSGT00390000005826.a.b.b #18	ENSGT00390000005826.a.b.a #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000156819.a.a #24	ENSGT00940000154755 #8	ENSGT00950000183000.c.a.b	ENSGT00940000158015	ENSGT00940000162003	ENSGT00940000154632	ENSGT00390000003349	ENSGT00940000159359	ENSGT00520000059926	ENSGT00390000001146	ENSGT00510000047537	ENSGT00390000000549	ENSGT00390000009679	ENSGT00390000014861	ENSGT00390000006916.c
Goode s thornscrub tortoise	MODERN SPECIES	17	BMP2 (ENSGEVG00005013391)	FERMT1 (ENSGEVG00005013448)	LRRN4 (ENSGEVG00005013578)	CRLS1 (ENSGEVG00005013701)	MCM8 (ENSGEVG00005013859)	TRMT6 (ENSGEVG00005014662)	CHGB (ENSGEVG00005014764)	SHLD1 (ENSGEVG00005015179)	GPCPD1 (ENSGEVG00005015205)	ENSGEVG00005015269 #18	ENSGEVG00005015418 #19	ENSGEVG00005015443 #19	ENSGEVG00005015489 #19	ENSGEVG00005015521	ENSGEVG00005015539 #18	CD93 (ENSGEVG00005015574) #22	SSTR4 (ENSGEVG00005015589) #24	CST3 (ENSGEVG00005015634) #8	DSTN (ENSGEVG00005015903)	RRBP1 (ENSGEVG00005015926)	BANF2 (ENSGEVG00005015970)	SNX5 (ENSGEVG00005015989)	MGME1 (ENSGEVG00005016011)	OVOL2 (ENSGEVG00005016082)	KAT14 (ENSGEVG00005016139)	BIRC5 (ENSGEVG00005016248)	DZANK1 (ENSGEVG00005016298)	POLR3F (ENSGEVG00005016411)	RBBP9 (ENSGEVG00005016438)	SEC23B (ENSGEVG00005016472)	DTD1 (ENSGEVG00005016506)
Abingdon island giant tortoise	MODERN SPECIES	1921													NAPB (ENSCABG00000007799) #18	GZF1 (ENSCABG00000007800) #19	ENSCABG00000007803 #19	CD93 (ENSCABG00000007808) #22	SSTR4 (ENSCABG00000007811) #24	CST3 (ENSCABG00000007820) #8	ENSCABG00000007891	RRBP1 (ENSCABG00000007897)	BANF2 (ENSCABG00000007908)	ENSCABG00000007909	SNX5 (ENSCABG00000007910)	MGME1 (ENSCABG00000007914)	OVOL2 (ENSCABG00000007915)	PET117 (ENSCABG00000007917)	KAT14 (ENSCABG00000007920)	BIRC5 (ENSCABG00000007923)	ENSCABG00000007937	ENSCABG00000007941	POLR3F (ENSCABG00000007942)
Archosauria	ANCESTRAL SPECIES	45		ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00960000189565	ENSGT01030000235482	ENSGT00940000157865	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00400000024959	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT00550000075046
Aves	ANCESTRAL SPECIES	56				ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B
Neognathae	ANCESTRAL SPECIES	32	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Galloanserae	ANCESTRAL SPECIES	29	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Anatidae	ANCESTRAL SPECIES	45	ENSGT00530000063603.B	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Pink-footed goose	MODERN SPECIES	117	GPR75 (ENSABRG00000012664)	ENSABRG00000012660	ERLEC1 (ENSABRG00000012498)	CHAC2 (ENSABRG00000012487)	ASB3 (ENSABRG00000012478)	MALL (ENSABRG00000012466)	NPHP1 (ENSABRG00000012031)	BUB1 (ENSABRG00000011694)	ENSABRG00000011634	ANAPC1 (ENSABRG00000011610)	MERTK (ENSABRG00000011592)	FBLN7 (ENSABRG00000011583)	ZC3H6 (ENSABRG00000011566)	NAPB (ENSABRG00000011550) #18	GZF1 (ENSABRG00000011534) #19	CD93 (ENSABRG00000011523) #22	ENSABRG00000011520	SSTR4 (ENSABRG00000011516) #24	FOXA2 (ENSABRG00000011501) #26	PAX1 (ENSABRG00000011485) #28	NKX2-2 (ENSABRG00000011480) #29	NKX2-4 (ENSABRG00000011475) #30	XRN2 (ENSABRG00000011465) #31	ENSABRG00000011461 #32	RALGAPA2 (ENSABRG00000007031) #34	INSM1 (ENSABRG00000006785) #35	CFAP61 (ENSABRG00000006636) #36	CRNKL1 (ENSABRG00000006550)	SLC24A3 (ENSABRG00000006519)	RIN2 (ENSABRG00000006510)
Duck	MODERN SPECIES	21	ENSAPLG00000029980	ASB3 (ENSAPLG00000010271)	MALL (ENSAPLG00000010673)	NPHP1 (ENSAPLG00000010863)	ENSAPLG00000011360	BUB1 (ENSAPLG00000011912)	BCL2L11 (ENSAPLG00000011772)	ANAPC1 (ENSAPLG00000012535)	ENSAPLG00000020305	ENSAPLG00000013064	ENSAPLG00000019080	ENSAPLG00000027404	ENSAPLG00000014287	NAPB (ENSAPLG00000014476) #18	GZF1 (ENSAPLG00000027566) #19	CD93 (ENSAPLG00000025359) #22	ENSAPLG00000019427	SSTR4 (ENSAPLG00000019606) #24	FOXA2 (ENSAPLG00000024325) #26	PAX1 (ENSAPLG00000021065) #28	XRN2 (ENSAPLG00000013869) #31	KIZ (ENSAPLG00000013782) #32	RALGAPA2 (ENSAPLG00000013547) #34	ENSAPLG00000029177	CFAP61 (ENSAPLG00000013456) #36	CRNKL1 (ENSAPLG00000013105)	ENSAPLG00000024100	RIN2 (ENSAPLG00000014865)	APLF (ENSAPLG00000009117)	PLEK (ENSAPLG00000009140)	CNRIP1 (ENSAPLG00000022779)
Phasianidae	ANCESTRAL SPECIES	29	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B	ENSGT00950000183148.b.b
Japanese quail	MODERN SPECIES	21	ASB3 (ENSCJPG00005015881)	MALL (ENSCJPG00005015879)	NPHP1 (ENSCJPG00005015877)	ENSCJPG00005015875	ENSCJPG00005015849	BUB1 (ENSCJPG00005015844)	ENSCJPG00005015843	ENSCJPG00005015842	ANAPC1 (ENSCJPG00005015837)	MERTK (ENSCJPG00005015833)	FBLN7 (ENSCJPG00005015831)	ZC3H6 (ENSCJPG00005015830)	NAPB (ENSCJPG00005015828) #18	GZF1 (ENSCJPG00005015826) #19	ENSCJPG00005015825 #19	CD93 (ENSCJPG00005015799) #22	ENSCJPG00005015797	SSTR4 (ENSCJPG00005015795) #24	FOXA2 (ENSCJPG00005015793) #26	ENSCJPG00005015788 #29	NKX2-4 (ENSCJPG00005015785) #30	XRN2 (ENSCJPG00005015783) #31	KIZ (ENSCJPG00005015757) #32	RALGAPA2 (ENSCJPG00005015594) #34	INSM1 (ENSCJPG00005015593) #35	CFAP61 (ENSCJPG00005015592) #36	CRNKL1 (ENSCJPG00005015591)	SLC24A3 (ENSCJPG00005015590)	RIN2 (ENSCJPG00005015589)	PYGB (ENSCJPG00005015588)	ABHD12 (ENSCJPG00005015587)
Phasianidae_b	ANCESTRAL SPECIES	28	ENSGT00940000159080	ENSGT00390000003855.a	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755.a	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B	ENSGT00950000183148.b.b
Chicken	MODERN SPECIES	22	ASB3 (ENSGALG00010016972)	CHAC2 (ENSGALG00010019992)	MALL (ENSGALG00010016975)	NPHP1 (ENSGALG00010016980)	TPCN3 (ENSGALG00010017001)	BUB1 (ENSGALG00010017024)	ENSGALG00010019362	ENSGALG00010016570	ANAPC1 (ENSGALG00010017890)	MERTK (ENSGALG00010017922)	FBLN7 (ENSGALG00010017950)	ZC3H8 (ENSGALG00010018002)	NAPB (ENSGALG00010018019) #18	ENSGALG00010018028	GZF1 (ENSGALG00010018037) #19	CD248 (ENSGALG00010019399) #22	SSTR4 (ENSGALG00010018057) #24	ENSGALG00010018067	FOXA2 (ENSGALG00010018076) #26	PAX1 (ENSGALG00010018083) #28	NKX2-2 (ENSGALG00010018111) #29	NKX2-4 (ENSGALG00010018125) #30	XRN2 (ENSGALG00010018148) #31	KIZ (ENSGALG00010018206) #32	RALGAPA2 (ENSGALG00010018241) #34	CFAP61 (ENSGALG00010018264) #36	INSM1 (ENSGALG00010018279) #35	CRNKL1 (ENSGALG00010018288)	SLC24A3 (ENSGALG00010018314)	RIN2 (ENSGALG00010018351)	PYGB (ENSGALG00010018376)
Neognathae_b	ANCESTRAL SPECIES	32	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT00390000003178	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Neognathae_c	ANCESTRAL SPECIES	35	ENSGT00530000063603.B	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT00960000189565	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B	ENSGT00550000075046
Kakapo	MODERN SPECIES	23	ERLEC1 (ENSSHBG00005003920)	ASB3 (ENSSHBG00005003932)	CHAC2 (ENSSHBG00005003939)	MALL (ENSSHBG00005003947)	ENSSHBG00005003954	ENSSHBG00005003982	BUB1 (ENSSHBG00005004013)	BCL2L11 (ENSSHBG00005004035)	ANAPC1 (ENSSHBG00005004106)	MERTK (ENSSHBG00005004201)	FBLN7 (ENSSHBG00005004208)	ZC3H6 (ENSSHBG00005004214)	NAPB (ENSSHBG00005004226) #18	GZF1 (ENSSHBG00005004233) #19	ENSSHBG00005004244 #19	CD93 (ENSSHBG00005004250) #22	ENSSHBG00005004256	SSTR4 (ENSSHBG00005004259) #24	FOXA2 (ENSSHBG00005004262) #26	PAX1 (ENSSHBG00005004267) #28	NKX2-2 (ENSSHBG00005004272) #29	NKX2-4 (ENSSHBG00005004276) #30	XRN2 (ENSSHBG00005004281) #31	KIZ (ENSSHBG00005004290) #32	RALGAPA2 (ENSSHBG00005004387) #34	CFAP61 (ENSSHBG00005004844) #36	ENSSHBG00005004852	CRNKL1 (ENSSHBG00005004860)	SLC24A3 (ENSSHBG00005004870)	RIN2 (ENSSHBG00005004874)
Golden eagle	MODERN SPECIES	24	ASB3 (ENSACCG00020005637)	NPHP1 (ENSACCG00020005679)	ENSACCG00020005723	BUB1 (ENSACCG00020005764)	ENSACCG00020005783	ENSACCG00020005788	ANAPC1 (ENSACCG00020005824)	MERTK (ENSACCG00020005872)	FBLN7 (ENSACCG00020005894)	ENSACCG00020005911	ENSACCG00020005918	ENSACCG00020005936	NAPB (ENSACCG00020005953) #18	GZF1 (ENSACCG00020005972) #19	ENSACCG00020005987 #19	CD93 (ENSACCG00020006004) #22	ENSACCG00020006015	SSTR4 (ENSACCG00020006025) #24	FOXA2 (ENSACCG00020006036) #26	PAX1 (ENSACCG00020006045) #28	NKX2-2 (ENSACCG00020006058) #29	NKX2-4 (ENSACCG00020006068) #30	XRN2 (ENSACCG00020006117) #31	KIZ (ENSACCG00020006182) #32	RALGAPA2 (ENSACCG00020006230) #34	CFAP61 (ENSACCG00020006273) #36	CRNKL1 (ENSACCG00020006304)	SLC24A3 (ENSACCG00020006342)	RIN2 (ENSACCG00020006417)	NAA20 (ENSACCG00020006429)	C2CD2L (ENSACCG00020006443)
Passeriformes	ANCESTRAL SPECIES	31	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT01030000234543.E	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Great tit	MODERN SPECIES	22	CHAC2 (ENSPMJG00000013944)	ASB3 (ENSPMJG00000013943)	MALL (ENSPMJG00000013935)	NPHP1 (ENSPMJG00000013904)	ENSPMJG00000013869	ENSPMJG00000013859	ENSPMJG00000013856	ANAPC1 (ENSPMJG00000013846)	MERTK (ENSPMJG00000013845)	ENSPMJG00000013844	ZC3H6 (ENSPMJG00000013843)	ENSPMJG00000013842	NAPB (ENSPMJG00000013758) #18	GZF1 (ENSPMJG00000013756) #19	ENSPMJG00000013755 #19	CD93 (ENSPMJG00000013751) #22	ENSPMJG00000013748	SSTR4 (ENSPMJG00000013747) #24	FOXA2 (ENSPMJG00000013745) #26	PAX1 (ENSPMJG00000013744) #28	ENSPMJG00000013730	XRN2 (ENSPMJG00000013729) #31	RALGAPA2 (ENSPMJG00000013536) #34	INSM1 (ENSPMJG00000013534) #35	CFAP61 (ENSPMJG00000013533) #36	CRNKL1 (ENSPMJG00000013532)	SLC24A3 (ENSPMJG00000013508)	RIN2 (ENSPMJG00000013504)	KCNK16 (ENSPMJG00000013502)	ENSPMJG00000013501
Passeriformes_d	ANCESTRAL SPECIES	32	ENSGT00530000063603.B	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Passeriformes_g	ANCESTRAL SPECIES	37	ENSGT00530000063603.B	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00960000189741	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Passeroidea	ANCESTRAL SPECIES	34	ENSGT00530000063603.B	ENSGT00390000003855.a	ENSGT00940000159080	ENSGT00940000161444	ENSGT00390000007701	ENSGT00940000162755	ENSGT00940000157865	ENSGT01030000235482	ENSGT00390000003178	ENSGT00390000016757	ENSGT00940000155669	ENSGT00830000128368.a	ENSGT00940000157396	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247 #30	ENSGT00670000098098 #31	ENSGT00960000189741	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT01030000234532.A.a.a.b	ENSGT00940000154866.B
Common canary	MODERN SPECIES	23	ERLEC1 (ENSSCAG00000014320)	CHAC2 (ENSSCAG00000014356)	ASB3 (ENSSCAG00000014361)	MALL (ENSSCAG00000014369)	NPHP1 (ENSSCAG00000014418)	ENSSCAG00000014519	ENSSCAG00000014525	ENSSCAG00000014534	ANAPC1 (ENSSCAG00000014551)	MERTK (ENSSCAG00000014622)	ENSSCAG00000014715	ZC3H6 (ENSSCAG00000014725)	NAPB (ENSSCAG00000014737) #18	GZF1 (ENSSCAG00000014750) #19	ENSSCAG00000014757 #19	ENSSCAG00000014764 #22	SSTR4 (ENSSCAG00000014767) #24	FOXA2 (ENSSCAG00000014772) #26	PAX1 (ENSSCAG00000014782) #28	XRN2 (ENSSCAG00000014793) #31	ENSSCAG00000014807	RALGAPA2 (ENSSCAG00000014824) #34	CFAP61 (ENSSCAG00000014845) #36	CRNKL1 (ENSSCAG00000014865)	SLC24A3 (ENSSCAG00000014909)	RIN2 (ENSSCAG00000014970)	BTBD3 (ENSSCAG00000014984)	ENSSCAG00000014990	SPTLC3 (ENSSCAG00000014993)	ISM1 (ENSSCAG00000015000)	TASP1 (ENSSCAG00000015009)
Zebra finch	MODERN SPECIES	23	ERLEC1 (ENSTGUG00000007266)	CHAC2 (ENSTGUG00000020037)	ASB3 (ENSTGUG00000007291)	MALL (ENSTGUG00000007317)	NPHP1 (ENSTGUG00000007320)	ENSTGUG00000025973	ENSTGUG00000007338	ENSTGUG00000007339	BCL2L11 (ENSTGUG00000029584)	ANAPC1 (ENSTGUG00000007360)	MERTK (ENSTGUG00000007420)	FBLN7 (ENSTGUG00000007459)	ZC3H6 (ENSTGUG00000007468)	NAPB (ENSTGUG00000007487) #18	GZF1 (ENSTGUG00000007503) #19	CD93 (ENSTGUG00000007522) #22	SSTR4 (ENSTGUG00000027392) #24	FOXA2 (ENSTGUG00000007523) #26	PAX1 (ENSTGUG00000007526) #28	NKX2-2 (ENSTGUG00000007528) #29	NKX2-4 (ENSTGUG00000007530) #30	XRN2 (ENSTGUG00000007535) #31	RALGAPA2 (ENSTGUG00000007590) #34	CFAP61 (ENSTGUG00000007628) #36	CRNKL1 (ENSTGUG00000007645)	SLC24A3 (ENSTGUG00000007669)	RIN2 (ENSTGUG00000007689)	KCNK16 (ENSTGUG00000007716)	KCNK17 (ENSTGUG00000029644)	KCNK5 (ENSTGUG00000007722)	SAYSD1 (ENSTGUG00000021592)
Lepidosauria	ANCESTRAL SPECIES	123																ENSGT00940000156996 #22	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247.b #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00400000024959	ENSGT00950000183139.A #34	ENSGT00940000162552 #35	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b
Episquamata	ANCESTRAL SPECIES	1	ENSGT00950000183199.b.a	ENSGT00390000014501	ENSGT00940000161612	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00940000154755 #8	ENSGT00940000164218	ENSGT00940000156996 #22	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247.b #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00400000024959	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00950000183199.b.a	ENSGT00390000014501	ENSGT00940000161612	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a.h	ENSGT00550000074988	ENSGT00940000154755 #8	ENSGT00940000167312	ENSGT00940000156996 #22	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247.b #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00400000024959	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT00550000075046	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Elapidae	ANCESTRAL SPECIES	8	ENSGT00950000183199.b.a	ENSGT00390000014501	ENSGT00940000161612	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a.h	ENSGT00550000074988	ENSGT00940000154755 #8	ENSGT00940000167312	ENSGT00940000156996 #22	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247.b #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT01000000215777	ENSGT00550000074931	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b.i	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00390000006916.c
Indian cobra	MODERN SPECIES	2	ENSNNAG00000014147	MED10 (ENSNNAG00000014120)	UBE2QL1 (ENSNNAG00000014111)	NSUN2 (ENSNNAG00000014006)	SRD5A1 (ENSNNAG00000013987)	TENT4A (ENSNNAG00000013975)	ADCY2 (ENSNNAG00000012796)	CFAP90 (ENSNNAG00000012693)	FASTKD3 (ENSNNAG00000012636)	MTRR (ENSNNAG00000012393)	SEMA5A (ENSNNAG00000012300)	ENSNNAG00000012269	CCT5 (ENSNNAG00000012242)	ENSNNAG00000012223 #8	ENSNNAG00000012207	ENSNNAG00000012195 #22	FOXA2 (ENSNNAG00000012180) #26	PAX1 (ENSNNAG00000012128) #28	ENSNNAG00000012106	NKX2-2 (ENSNNAG00000012093) #29	NKX2-4 (ENSNNAG00000012057) #30	XRN2 (ENSNNAG00000011585) #31	RALGAPA2 (ENSNNAG00000010761) #34	CFAP61 (ENSNNAG00000010625) #36	ENSNNAG00000010579	CRNKL1 (ENSNNAG00000010521)	RIN2 (ENSNNAG00000010471)	SLC24A3 (ENSNNAG00000010197)	SCP2D1 (ENSNNAG00000010155)	DTD1 (ENSNNAG00000010119)	SEC23B (ENSNNAG00000010054)
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00950000183199.b.a	ENSGT00390000014501	ENSGT00940000161612	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT00940000157811	ENSGT00940000156424	ENSGT00390000015121	ENSGT01030000234607.A.a.a.a	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a.h	ENSGT00550000074988	ENSGT00940000154755 #8	ENSGT00940000167312	ENSGT00940000156996 #22	ENSGT00940000155999 #26	ENSGT00940000159137 #28	ENSGT00940000159727 #29	ENSGT00940000162247.b #30	ENSGT00670000098098 #31	ENSGT00390000010121 #32	ENSGT00950000183139.A #34	ENSGT00390000004987 #36	ENSGT00550000074931	ENSGT00940000154866.B	ENSGT01030000234532.A.a.a.b.i	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00950000183147.B
Blue-lipped sea krait	MODERN SPECIES	4940															ENSLLTG00000014978	ENSLLTG00000014982 #22
Anura	ANCESTRAL SPECIES	16	ENSGT00940000156426	ENSGT00940000155428	ENSGT00940000160301	ENSGT00390000018717.b.a.a	ENSGT00940000155666.c	ENSGT00390000013444.a.b.a	ENSGT00940000161448	ENSGT00390000001607	ENSGT01090000260080.a	ENSGT00390000008327	ENSGT00940000154206.b	ENSGT01010000229799	ENSGT00440000033970	ENSGT00390000005826.a.b #18	ENSGT00870000136554 #19	ENSGT00940000156996 #22	ENSGT00940000155559.b	ENSGT00440000033965	ENSGT00900000141103	ENSGT00910000144152	ENSGT00950000183166.a.a.a.b	ENSGT00940000156568.b	ENSGT00940000155564	ENSGT00940000154864.b	ENSGT00390000005045	ENSGT00390000011103.A	ENSGT00390000011433	ENSGT00390000007723	ENSGT00530000063603.B	ENSGT00390000003855.a	ENSGT00940000159080
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	7	TMX4 (ENSLLEG00000011982)	HAO1 (ENSLLEG00000012039)	BMP2 (ENSLLEG00000012090)	ENSLLEG00000012116	FERMT1 (ENSLLEG00000012138)	MCM8 (ENSLLEG00000012330)	LRRN4 (ENSLLEG00000013156)	TRMT6 (ENSLLEG00000013191)	CHGB (ENSLLEG00000013275)	ENSLLEG00000013426	ENSLLEG00000013441	ENSLLEG00000013466	GPCPD1 (ENSLLEG00000013495)	NAPB (ENSLLEG00000013764) #18	GZF1 (ENSLLEG00000014025) #19	CD93 (ENSLLEG00000014081) #22	ENSLLEG00000014100 #22	ENSLLEG00000014117	SSTR4 (ENSLLEG00000014153) ##24	ENSLLEG00000014173	CCDC88A (ENSLLEG00000014258)	ENSLLEG00000015742	ENSLLEG00000015782	MTIF2 (ENSLLEG00000015860)	ENSLLEG00000016111	CLHC1 (ENSLLEG00000016372)	ENSLLEG00000005364	EML6 (ENSLLEG00000005462)	ENSLLEG00000005606	SPTBN1 (ENSLLEG00000005643)	ENSLLEG00000006055
Leishan spiny toad	MODERN SPECIES	7	HAO1 (ENSLLEG00000012039)	BMP2 (ENSLLEG00000012090)	ENSLLEG00000012116	FERMT1 (ENSLLEG00000012138)	MCM8 (ENSLLEG00000012330)	LRRN4 (ENSLLEG00000013156)	TRMT6 (ENSLLEG00000013191)	CHGB (ENSLLEG00000013275)	ENSLLEG00000013426	ENSLLEG00000013441	ENSLLEG00000013466	GPCPD1 (ENSLLEG00000013495)	NAPB (ENSLLEG00000013764) #18	GZF1 (ENSLLEG00000014025) #19	CD93 (ENSLLEG00000014081) #22	ENSLLEG00000014100 #22	ENSLLEG00000014117	SSTR4 (ENSLLEG00000014153) ##24	ENSLLEG00000014173	CCDC88A (ENSLLEG00000014258)	ENSLLEG00000015742	ENSLLEG00000015782	MTIF2 (ENSLLEG00000015860)	ENSLLEG00000016111	CLHC1 (ENSLLEG00000016372)	ENSLLEG00000005364	EML6 (ENSLLEG00000005462)	ENSLLEG00000005606	SPTBN1 (ENSLLEG00000005643)	ENSLLEG00000006055	C2orf73 (ENSLLEG00000006067)
Frog	DUPLICATION
Frog	MODERN SPECIES	5	plcb1 (ENSXETG00000005524)	tmx4 (ENSXETG00000026035)	hao1 (ENSXETG00000005520)	ENSXETG00000047125	bmp2 (ENSXETG00000005519)	pik3r5 (ENSXETG00000005517)	lrrn4 (ENSXETG00000005513)	crls1 (ENSXETG00000026037)	mcm8 (ENSXETG00000004500)	trmt6 (ENSXETG00000004501)	ENSXETG00000035965	chgb (ENSXETG00000033577)	gpcpd1 (ENSXETG00000032815)	napb (ENSXETG00000040474) #18	gzf1 (ENSXETG00000004510) #19	CD93 (ENSXETG00000032396) #22	ENSXETG00000033122 #22	ENSXETG00000030871	sstr4 (ENSXETG00000041907) ##24	ccdc88a (ENSXETG00000004516)	prorsd1p (ENSXETG00000034761)	mtif2 (ENSXETG00000032249)	rps27a (ENSXETG00000004519)	clhc1 (ENSXETG00000032814)	rtn4 (ENSXETG00000004521)	eml6 (ENSXETG00000015159)	sptbn1 (ENSXETG00000029995)	c2orf73 (ENSXETG00000015189)	acyp2 (ENSXETG00000027759)	atp12a-like (ENSXETG00000015190)	ENSXETG00000042312
Frog	MODERN SPECIES	5	tmx4 (ENSXETG00000026035)	hao1 (ENSXETG00000005520)	ENSXETG00000047125	bmp2 (ENSXETG00000005519)	pik3r5 (ENSXETG00000005517)	lrrn4 (ENSXETG00000005513)	crls1 (ENSXETG00000026037)	mcm8 (ENSXETG00000004500)	trmt6 (ENSXETG00000004501)	ENSXETG00000035965	chgb (ENSXETG00000033577)	gpcpd1 (ENSXETG00000032815)	napb (ENSXETG00000040474) #18	gzf1 (ENSXETG00000004510) #19	CD93 (ENSXETG00000032396) #22	ENSXETG00000033122 #22	ENSXETG00000030871	sstr4 (ENSXETG00000041907) ##24	ccdc88a (ENSXETG00000004516)	prorsd1p (ENSXETG00000034761)	mtif2 (ENSXETG00000032249)	rps27a (ENSXETG00000004519)	clhc1 (ENSXETG00000032814)	rtn4 (ENSXETG00000004521)	eml6 (ENSXETG00000015159)	sptbn1 (ENSXETG00000029995)	c2orf73 (ENSXETG00000015189)	acyp2 (ENSXETG00000027759)	atp12a-like (ENSXETG00000015190)	ENSXETG00000042312	psme4 (ENSXETG00000015195)
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	309			TMX4 (ENSLACG00000003712)	HAO1 (ENSLACG00000004965)	BMP2 (ENSLACG00000014241)	gdf3 (ENSLACG00000014310)	FERMT1 (ENSLACG00000016076)	LRRN4 (ENSLACG00000016243)	CRLS1 (ENSLACG00000016301)	MCM8 (ENSLACG00000016354)	TRMT6 (ENSLACG00000016478)	ENSLACG00000016548	GPCPD1 (ENSLACG00000017080)	napbb (ENSLACG00000017300) #18	ENSLACG00000017381	CD93 (ENSLACG00000017869) #22	ENSLACG00000017898	ENSLACG00000017923 #22	ENSLACG00000018019 ##24
Coelacanth	MODERN SPECIES	1143															ENSLACG00000000209	cd248a (ENSLACG00000006492) #22	ENSLACG00000007184 ##24	ENSLACG00000008212 #26	ENSLACG00000009099	GAL3ST3 (ENSLACG00000009395)	SF3B2 (ENSLACG00000010429)	PACS1 (ENSLACG00000011725)	ENSLACG00000012394	RAB1B (ENSLACG00000012717)	ENSLACG00000012976
Coelacanth	MODERN SPECIES	309	TMX4 (ENSLACG00000003712)	HAO1 (ENSLACG00000004965)	BMP2 (ENSLACG00000014241)	gdf3 (ENSLACG00000014310)	FERMT1 (ENSLACG00000016076)	LRRN4 (ENSLACG00000016243)	CRLS1 (ENSLACG00000016301)	MCM8 (ENSLACG00000016354)	TRMT6 (ENSLACG00000016478)	ENSLACG00000016548	GPCPD1 (ENSLACG00000017080)	napbb (ENSLACG00000017300) #18	ENSLACG00000017381	CD93 (ENSLACG00000017869) #22	ENSLACG00000017898	ENSLACG00000017923 #22	ENSLACG00000018019 ##24