Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755.d ##15	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Glires	ANCESTRAL SPECIES	17	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Rodentia	ANCESTRAL SPECIES	18	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000164098	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Kangaroo rat	MODERN SPECIES	418	Pygb (ENSDORG00000007176) #7	Entpd6 (ENSDORG00000007175) #8	Vsx1 (ENSDORG00000005490) #9	Acss1 (ENSDORG00000004006) #10	Apmap (ENSDORG00000025391) #11	Cst7 (ENSDORG00000005298) #12	Syndig1 (ENSDORG00000003111) #13	ENSDORG00000008948 #14	Cst3 (ENSDORG00000027673) #15	Cst13 (ENSDORG00000027228) #16	Cst8 (ENSDORG00000011859) #17	Cst12 (ENSDORG00000023744) #18	Napb (ENSDORG00000011856) #19	Gzf1 (ENSDORG00000011855) #20	Nxt1 (ENSDORG00000024690) #21	Cd93 (ENSDORG00000028704) #22	Sstr4 (ENSDORG00000010486) #23	Foxa2 (ENSDORG00000027269) #24	Pax1 (ENSDORG00000016051) #25	Nkx2-2 (ENSDORG00000007972) #26	Nkx2-4 (ENSDORG00000023542) #27	Xrn2 (ENSDORG00000005434) #28	ENSDORG00000024554 #29	ENSDORG00000025962 #30	Insm1 (ENSDORG00000009864) #31	ENSDORG00000000395 #32	ENSDORG00000029623 #33	ENSDORG00000024717 #34	ENSDORG00000000394 #35	Naa20 (ENSDORG00000028339) #36	Rin2 (ENSDORG00000000392) #37
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.b.b.a ##15	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.b.b.a ##15	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #13	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Chinese hamster chok1gshd	MODERN SPECIES	188	ENSCGRG00001019793	Cst10 (ENSCGRG00001015577) #14	ENSCGRG00001017333 ##15	ENSCGRG00001020338	ENSCGRG00001014456	ENSCGRG00001017812	Cst13 (ENSCGRG00001024079) #16	Cst8 (ENSCGRG00001020750) #17	Cst12 (ENSCGRG00001024036) #18	Cstdc1 (ENSCGRG00001024407) ##18	Cst11 (ENSCGRG00001004859)	Cstl1 (ENSCGRG00001006313)	Napb (ENSCGRG00001015884) #19	Gzf1 (ENSCGRG00001003944) #20	ENSCGRG00001007062 #21	Cd93 (ENSCGRG00001016628) #22	Thbd (ENSCGRG00001010215)	Sstr4 (ENSCGRG00001010896) #23	Foxa2 (ENSCGRG00001000494) #24	Pax1 (ENSCGRG00001009223) #25	Nkx2-2 (ENSCGRG00001013924) #26	ENSCGRG00001016394	Nkx2-4 (ENSCGRG00001002742) #27	Xrn2 (ENSCGRG00001010676) #28	Kiz (ENSCGRG00001020800)	Ralgapa2 (ENSCGRG00001024249) #30	Insm1 (ENSCGRG00001011430) #31	Cfap61 (ENSCGRG00001022702) #34	Slc24a3 (ENSCGRG00001004364)	Scp2d1 (ENSCGRG00001008412)	Dtd1 (ENSCGRG00001008221)
Golden Hamster	MODERN SPECIES	650	Acss1 (ENSMAUG00000016079) #10	Apmap (ENSMAUG00000022255) #11	Cst7 (ENSMAUG00000006797) #12	1810024B03Rik (ENSMAUG00000019265)	Syndig1 (ENSMAUG00000012485) #13	ENSMAUG00000013001	Cst10 (ENSMAUG00000020427) #14	Cst3 (ENSMAUG00000012476) #15	Cstdc2 (ENSMAUG00000014409)	Cst9 (ENSMAUG00000012174)	Cst13 (ENSMAUG00000021851) #16	Cst12 (ENSMAUG00000010970) #18	Napb (ENSMAUG00000018004) #19	Gzf1 (ENSMAUG00000019656) #20	Nxt1 (ENSMAUG00000004141) #21	Cd93 (ENSMAUG00000019441) #22	Sstr4 (ENSMAUG00000008430) #23	Foxa2 (ENSMAUG00000016457) #24	Pax1 (ENSMAUG00000019674) #25	Nkx2-2 (ENSMAUG00000004347) #26	Nkx2-4 (ENSMAUG00000013928) #27	Xrn2 (ENSMAUG00000021842) #28	Kiz (ENSMAUG00000012933)	Ralgapa2 (ENSMAUG00000000917) #30	Insm1 (ENSMAUG00000008643) #31	Cfap61 (ENSMAUG00000021388) #34	ENSMAUG00000018263	ENSMAUG00000014865	Crnkl1 (ENSMAUG00000020764) #35	Naa20 (ENSMAUG00000016403) #36	Rin2 (ENSMAUG00000010319) #37
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00950000183147.B #13	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.b.b.a ##15	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Northern American deer mouse	MODERN SPECIES	17	Syndig1 (ENSPEMG00000002878) #13	Cst10 (ENSPEMG00000018501) #14	ENSPEMG00000025257	ENSPEMG00000028985 ##15	Cst3 (ENSPEMG00000019347) #15	Cst9 (ENSPEMG00000020106)	Cst13 (ENSPEMG00000005338) #16	Cst8 (ENSPEMG00000030932) #17	Cst12 (ENSPEMG00000000557) #18	Cstdc1 (ENSPEMG00000018705) ##18	Cst11 (ENSPEMG00000000143)	Cstl1 (ENSPEMG00000015396)	Napb (ENSPEMG00000014658) #19	Gzf1 (ENSPEMG00000011285) #20	Nxt1 (ENSPEMG00000010397) #21	Cd93 (ENSPEMG00000009909) #22	Thbd (ENSPEMG00000013258)	Sstr4 (ENSPEMG00000013404) #23	Foxa2 (ENSPEMG00000018383) #24	ENSPEMG00000013352	Pax1 (ENSPEMG00000013032) #25	Nkx2-2 (ENSPEMG00000031205) #26	Xrn2 (ENSPEMG00000000111) #28	Kiz (ENSPEMG00000019926)	ENSPEMG00000018301	Ralgapa2 (ENSPEMG00000015207) #30	Insm1 (ENSPEMG00000011704) #31	Cfap61 (ENSPEMG00000019999) #34	Crnkl1 (ENSPEMG00000000073) #35	Naa20 (ENSPEMG00000019944) #36	Rin2 (ENSPEMG00000007218) #37
Prairie vole	MODERN SPECIES	86				Cst3 (ENSMOCG00000018857) #15	Cstdc2 (ENSMOCG00000021896)	Cst13 (ENSMOCG00000012990) #16	Cst8 (ENSMOCG00000020831) #17	Cst12 (ENSMOCG00000013277) #18	Cstdc1 (ENSMOCG00000015424) ##18	Cst11 (ENSMOCG00000016678)	Cstl1 (ENSMOCG00000019330)	Napb (ENSMOCG00000000502) #19	Gzf1 (ENSMOCG00000017816) #20	Nxt1 (ENSMOCG00000018712) #21	ENSMOCG00000014565	Cd93 (ENSMOCG00000008988) #22	Thbd (ENSMOCG00000004558)	Sstr4 (ENSMOCG00000004743) #23	Foxa2 (ENSMOCG00000017025) #24	Pax1 (ENSMOCG00000000474) #25	Nkx2-2 (ENSMOCG00000016851) #26	Nkx2-4 (ENSMOCG00000012451) #27	Xrn2 (ENSMOCG00000012588) #28	Kiz (ENSMOCG00000022509)	ENSMOCG00000020632	Ralgapa2 (ENSMOCG00000015663) #30	Insm1 (ENSMOCG00000010418) #31	Cfap61 (ENSMOCG00000001829) #34	ENSMOCG00000000681 #35	ENSMOCG00000021892 #36	Rin2 (ENSMOCG00000011014) #37
Murinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #13	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Mus	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #13	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Mus_A	ANCESTRAL SPECIES		ENSGT00950000183147.B #13	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00970000195442	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931.m #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000172008	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00970000195442	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931.m #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Mouse	MODERN SPECIES	11	Syndig1 (ENSMUSG00000074736) #13	Cst10 (ENSMUSG00000033156) #14	Gm1330 (ENSMUSG00000063507)	Cst3 (ENSMUSG00000027447) #15	Cstdc2 (ENSMUSG00000027446)	Cst9 (ENSMUSG00000027445)	Cst13 (ENSMUSG00000036924) #16	Cst8 (ENSMUSG00000027442) #17	Cst12 (ENSMUSG00000027443) #18	Cstdc1 (ENSMUSG00000027444) ##18	Cst11 (ENSMUSG00000036958)	Cstl1 (ENSMUSG00000055177)	Napb (ENSMUSG00000027438) #19	Gzf1 (ENSMUSG00000027439) #20	Nxt1 (ENSMUSG00000036992) #21	Cd93 (ENSMUSG00000027435) #22	Thbd (ENSMUSG00000074743)	Sstr4 (ENSMUSG00000037014) #23	Foxa2 (ENSMUSG00000037025) #24	Pax1 (ENSMUSG00000037034) #25	Nkx2-2 (ENSMUSG00000027434) #26	Nkx2-4 (ENSMUSG00000054160) #27	Xrn2 (ENSMUSG00000027433) #28	Kiz (ENSMUSG00000074749)	Ralgapa2 (ENSMUSG00000037110) #30	Insm1 (ENSMUSG00000068154) #31	Cfap61 (ENSMUSG00000037143) #34	Crnkl1 (ENSMUSG00000001767) #35	Naa20 (ENSMUSG00000002728) #36	Rin2 (ENSMUSG00000001768) #37	Slc24a3 (ENSMUSG00000063873)
Mus_C	ANCESTRAL SPECIES		ENSGT00860000135980	ENSGT00940000154755.c.b.a #14	ENSGT00940000172008	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.a	ENSGT00940000161877.c.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00970000195442	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931.m #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
spretus	MODERN SPECIES	11	Syndig1 (MGP_SPRETEiJ_G0025340) #13	Cst10 (MGP_SPRETEiJ_G0025339) #14	MGP_SPRETEiJ_G0025338	Cst3 (MGP_SPRETEiJ_G0025337) #15	Cstdc2 (MGP_SPRETEiJ_G0025336)	Cst9 (MGP_SPRETEiJ_G0025335)	Cst13 (MGP_SPRETEiJ_G0025334) #16	Cst8 (MGP_SPRETEiJ_G0025333) #17	Cst12 (MGP_SPRETEiJ_G0025332) #18	Cstdc1 (MGP_SPRETEiJ_G0025331) ##18	Cst11 (MGP_SPRETEiJ_G0025330)	Cstl1 (MGP_SPRETEiJ_G0025329)	Napb (MGP_SPRETEiJ_G0025328) #19	Gzf1 (MGP_SPRETEiJ_G0025327) #20	Nxt1 (MGP_SPRETEiJ_G0025326) #21	Cd93 (MGP_SPRETEiJ_G0025325) #22	Thbd (MGP_SPRETEiJ_G0025324)	Sstr4 (MGP_SPRETEiJ_G0025323) #23	Foxa2 (MGP_SPRETEiJ_G0025322) #24	Pax1 (MGP_SPRETEiJ_G0025321) #25	Nkx2-2 (MGP_SPRETEiJ_G0025320) #26	Nkx2-4 (MGP_SPRETEiJ_G0025319) #27	Xrn2 (MGP_SPRETEiJ_G0025318) #28	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316)	Ralgapa2 (MGP_SPRETEiJ_G0025315) #30	Insm1 (MGP_SPRETEiJ_G0025314) #31	Cfap61 (MGP_SPRETEiJ_G0025313) #34	Crnkl1 (MGP_SPRETEiJ_G0025312) #35	Naa20 (MGP_SPRETEiJ_G0025311) #36	Rin2 (MGP_SPRETEiJ_G0025310) #37
Steppe mouse	MODERN SPECIES	41			Cst3 (ENSMSIG00000003295) #15	Cstdc2 (ENSMSIG00000003283)	Cst9 (ENSMSIG00000003261)	Cst13 (ENSMSIG00000003223) #16	Cst8 (ENSMSIG00000003194) #17	Cst12 (ENSMSIG00000003169) #18	Cstdc1 (ENSMSIG00000003153) ##18	Cst11 (ENSMSIG00000003137)	Cstl1 (ENSMSIG00000003118)	Napb (ENSMSIG00000003094) #19	Gzf1 (ENSMSIG00000003080) #20	Nxt1 (ENSMSIG00000003067) #21	ENSMSIG00000003019	Cd93 (ENSMSIG00000002996) #22	Thbd (ENSMSIG00000002989)	Sstr4 (ENSMSIG00000002973) #23	Foxa2 (ENSMSIG00000002945) #24
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024422	Syndig1 (MGP_CAROLIEiJ_G0024421) #13	Cst10 (MGP_CAROLIEiJ_G0024420) #14	Cst3 (MGP_CAROLIEiJ_G0024419) #15	Cstdc2 (MGP_CAROLIEiJ_G0024418)	Cst9 (MGP_CAROLIEiJ_G0024417)	Cst13 (MGP_CAROLIEiJ_G0024416) #16	Cst8 (MGP_CAROLIEiJ_G0024415) #17	Cst12 (MGP_CAROLIEiJ_G0024414) #18	Cstdc1 (MGP_CAROLIEiJ_G0024413) ##18	Cst11 (MGP_CAROLIEiJ_G0024412)	Cstl1 (MGP_CAROLIEiJ_G0024411)	Napb (MGP_CAROLIEiJ_G0024410) #19	Gzf1 (MGP_CAROLIEiJ_G0024409) #20	Nxt1 (MGP_CAROLIEiJ_G0024408) #21	Cd93 (MGP_CAROLIEiJ_G0024407) #22	Thbd (MGP_CAROLIEiJ_G0024406)	Sstr4 (MGP_CAROLIEiJ_G0024405) #23	Foxa2 (MGP_CAROLIEiJ_G0024404) #24	Pax1 (MGP_CAROLIEiJ_G0024403) #25	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #26	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #27	Xrn2 (MGP_CAROLIEiJ_G0024400) #28	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398)	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #30	Insm1 (MGP_CAROLIEiJ_G0024396) #31	Cfap61 (MGP_CAROLIEiJ_G0024395) #34	Crnkl1 (MGP_CAROLIEiJ_G0024394) #35	Naa20 (MGP_CAROLIEiJ_G0024393) #36	Rin2 (MGP_CAROLIEiJ_G0024392) #37
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025865	MGP_PahariEiJ_G0025864	Syndig1 (MGP_PahariEiJ_G0025863) #13	Cst10 (MGP_PahariEiJ_G0025862) #14	Cst3 (MGP_PahariEiJ_G0025861) #15	Cstdc2 (MGP_PahariEiJ_G0025860)	Cst13 (MGP_PahariEiJ_G0025859) #16	Cst8 (MGP_PahariEiJ_G0025858) #17	Cst12 (MGP_PahariEiJ_G0025857) #18	Cstdc1 (MGP_PahariEiJ_G0025856) ##18	Cst11 (MGP_PahariEiJ_G0025855)	Cstl1 (MGP_PahariEiJ_G0025854)	Napb (MGP_PahariEiJ_G0025853) #19	Gzf1 (MGP_PahariEiJ_G0025852) #20	Nxt1 (MGP_PahariEiJ_G0025851) #21	Cd93 (MGP_PahariEiJ_G0025850) #22	Thbd (MGP_PahariEiJ_G0025849)	Sstr4 (MGP_PahariEiJ_G0025848) #23	Foxa2 (MGP_PahariEiJ_G0025847) #24	Pax1 (MGP_PahariEiJ_G0025846) #25	Nkx2-2 (MGP_PahariEiJ_G0025845) #26	Nkx2-4 (MGP_PahariEiJ_G0025844) #27	Xrn2 (MGP_PahariEiJ_G0025843) #28	Kiz (MGP_PahariEiJ_G0025842)	Ralgapa2 (MGP_PahariEiJ_G0025841) #30	Insm1 (MGP_PahariEiJ_G0025840) #31	Cfap61 (MGP_PahariEiJ_G0025839) #34	Crnkl1 (MGP_PahariEiJ_G0025838) #35	Naa20 (MGP_PahariEiJ_G0025837) #36	Rin2 (MGP_PahariEiJ_G0025836) #37	MGP_PahariEiJ_G0025835
Rat	MODERN SPECIES	13	Fth1-ps5 (ENSRNOG00000033100)	Andpro (ENSRNOG00000031840) ##15	AABR07054186.1 (ENSRNOG00000032769)	Cst3 (ENSRNOG00000005195) #15	Cstdc2 (ENSRNOG00000005178)	Cst9l (ENSRNOG00000005162)	Cst13 (ENSRNOG00000005103) #16	Cst8 (ENSRNOG00000004989) #17	Cst12 (ENSRNOG00000004946) #18	LOC257643 (ENSRNOG00000004858) ##18	Cst11 (ENSRNOG00000004808)	Cstl1 (ENSRNOG00000004779)	Napb (ENSRNOG00000004753) #19	Gzf1 (ENSRNOG00000004735) #20	Nxt1 (ENSRNOG00000004700) #21	Cd93 (ENSRNOG00000024799) #22	Thbd (ENSRNOG00000004687)	Sstr4 (ENSRNOG00000004641) #23	Foxa2 (ENSRNOG00000013133) #24	Pax1 (ENSRNOG00000024882) #25	Nkx2-2 (ENSRNOG00000012728) #26	Nkx2-4 (ENSRNOG00000012647) #27	Xrn2 (ENSRNOG00000011785) #28	Kiz (ENSRNOG00000025141)	ENSRNOG00000070752	Ralgapa2 (ENSRNOG00000036964) #30	Insm1 (ENSRNOG00000068937) #31	AABR07054096.1 (ENSRNOG00000011028) #34	Crnkl1 (ENSRNOG00000010587) #35	Naa20 (ENSRNOG00000010523) #36	Rin2 (ENSRNOG00000010131) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	353											Cst11 (ENSNGAG00000023054)	Cstl1 (ENSNGAG00000023212)	Napb (ENSNGAG00000023681) #19	Gzf1 (ENSNGAG00000024012) #20	Nxt1 (ENSNGAG00000000803) #21	Cd93 (ENSNGAG00000013591) #22	Sstr4 (ENSNGAG00000012473) #23
Lesser Egyptian jerboa	MODERN SPECIES	159						Cst3 (ENSJJAG00000013565) #15	Cst9 (ENSJJAG00000013510)	Cst13 (ENSJJAG00000013369) #16	Cst8 (ENSJJAG00000013212) #17	Cst12 (ENSJJAG00000012500) #18	Cstdc1 (ENSJJAG00000012315) ##18	Cstl1 (ENSJJAG00000011653)	Napb (ENSJJAG00000010872) #19	Gzf1 (ENSJJAG00000008172) #20	ENSJJAG00000012022 #21	Cd93 (ENSJJAG00000007591) #22	Sstr4 (ENSJJAG00000023336) #23	Foxa2 (ENSJJAG00000023228) #24	Pax1 (ENSJJAG00000023177) #25	Nkx2-2 (ENSJJAG00000022426) #26	Nkx2-4 (ENSJJAG00000022335) #27	Xrn2 (ENSJJAG00000022128) #28	Kiz (ENSJJAG00000021546)	ENSJJAG00000020834	ENSJJAG00000020710 #30	ENSJJAG00000020467 #30	Insm1 (ENSJJAG00000020276) #31	Cfap61 (ENSJJAG00000018922) #34	Crnkl1 (ENSJJAG00000016926) #35	Naa20 (ENSJJAG00000016004) #36	ENSJJAG00000015745 #37
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.d	ENSGT00940000164098	ENSGT00940000161877.c.b	ENSGT00940000161877.c.a	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000154755.c.b.e #14	ENSGT00940000154755.c.a #15	ENSGT00940000164098	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000154755.c.b.f #14	ENSGT00940000154755.c.b.e #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00390000007696.e.a.a.a	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36
Marmotini_b	ANCESTRAL SPECIES	140	ENSGT00940000154755.c.b.f #14	ENSGT00940000154755.c.b.e #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.c.b	ENSGT00940000161877.d	ENSGT00940000161877.c.a	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00390000007696.e.a.a.a
Squirrel	MODERN SPECIES	220	ENSSTOG00000023496	ENSSTOG00000026963 #15	ENSSTOG00000015564	ENSSTOG00000028869	ENSSTOG00000004129 #16	ENSSTOG00000020102	CST8 (ENSSTOG00000004122) #17	ENSSTOG00000024532 #18	ENSSTOG00000021841 ##18	CST11 (ENSSTOG00000004847)	CSTL1 (ENSSTOG00000024563)	NAPB (ENSSTOG00000022350) #19	ENSSTOG00000030626	GZF1 (ENSSTOG00000009820) #20	NXT1 (ENSSTOG00000026331) #21	CD93 (ENSSTOG00000024530) #22	SSTR4 (ENSSTOG00000021697) #23	FOXA2 (ENSSTOG00000020150) #24	PAX1 (ENSSTOG00000003000) #25	NKX2-2 (ENSSTOG00000021450) #26	XRN2 (ENSSTOG00000000589) #28	KIZ (ENSSTOG00000007449)
Arctic ground squirrel	MODERN SPECIES	114	ENSUPAG00010009918	ENSUPAG00010009902	ENSUPAG00010009895 #16	CST8 (ENSUPAG00010009884) #17	ENSUPAG00010009878 #18	ENSUPAG00010009872 ##18	CST11 (ENSUPAG00010009858)	CSTL1 (ENSUPAG00010009856)	ENSUPAG00010009855	ENSUPAG00010009850	NAPB (ENSUPAG00010009788) #19	GZF1 (ENSUPAG00010009780) #20	NXT1 (ENSUPAG00010009776) #21	ENSUPAG00010009772	ENSUPAG00010009759	CD93 (ENSUPAG00010009758) #22	THBD (ENSUPAG00010009753)	SSTR4 (ENSUPAG00010009751) #23	FOXA2 (ENSUPAG00010009738) #24	ENSUPAG00010009726	PAX1 (ENSUPAG00010009718) #25	NKX2-2 (ENSUPAG00010009710) #26	NKX2-4 (ENSUPAG00010009706) #27	XRN2 (ENSUPAG00010009667) #28	KIZ (ENSUPAG00010009237)	ENSUPAG00010009220
Alpin marmot	MODERN SPECIES		SYNDIG1 (ENSMMMG00000004598) #13	ENSMMMG00000004547 #14	ENSMMMG00000004528 #15	ENSMMMG00000004523	ENSMMMG00000004513 #16	CST8 (ENSMMMG00000004504) #17	ENSMMMG00000004491 #18	ENSMMMG00000004483 ##18	CST11 (ENSMMMG00000004467)	CSTL1 (ENSMMMG00000004456)	ENSMMMG00000004433	NAPB (ENSMMMG00000004419) #19	GZF1 (ENSMMMG00000004407) #20	NXT1 (ENSMMMG00000004405) #21	ENSMMMG00000004398	CD93 (ENSMMMG00000004395) #22	THBD (ENSMMMG00000004391)	SSTR4 (ENSMMMG00000004385) #23	FOXA2 (ENSMMMG00000004350) #24	PAX1 (ENSMMMG00000004326) #25	NKX2-2 (ENSMMMG00000004284) #26	XRN2 (ENSMMMG00000004161) #28	KIZ (ENSMMMG00000003881)	ENSMMMG00000003871	RALGAPA2 (ENSMMMG00000003453) #30	ENSMMMG00000003417 #32	ENSMMMG00000003408 #34	ENSMMMG00000003290 #34	CRNKL1 (ENSMMMG00000003244) #35	NAA20 (ENSMMMG00000003240) #36	RIN2 (ENSMMMG00000003172) #37
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005012618	ENSSVLG00005012635 #15	ENSSVLG00005012678	ENSSVLG00005012749	ENSSVLG00005012823	ENSSVLG00005012871 #16	CST8 (ENSSVLG00005000126) #17	ENSSVLG00005000133 #18	ENSSVLG00005000139 ##18	CST11 (ENSSVLG00005000162)	CSTL1 (ENSSVLG00005000168)	NAPB (ENSSVLG00005000227) #19	GZF1 (ENSSVLG00005000288) #20	ENSSVLG00005000304 #21	ENSSVLG00005000317 #21	CD93 (ENSSVLG00005000330) #22	THBD (ENSSVLG00005000349)	SSTR4 (ENSSVLG00005000359) #23	ENSSVLG00005000368	FOXA2 (ENSSVLG00005000389) #24	ENSSVLG00005000403	PAX1 (ENSSVLG00005000421) #25	NKX2-2 (ENSSVLG00005000441) #26	NKX2-4 (ENSSVLG00005000455) #27	XRN2 (ENSSVLG00005000470) #28	KIZ (ENSSVLG00005000513)	ENSSVLG00005000546	RALGAPA2 (ENSSVLG00005000611) #30	INSM1 (ENSSVLG00005000689) #31	CFAP61 (ENSSVLG00005000731) #34	ENSSVLG00005000777
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.d	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987.n.a #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b.c #14	ENSGT00940000154755.c.b.d #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877.d	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987.n.a #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.c.b.c #14	ENSGT00940000154755.c.b.d #14	ENSGT00940000154755.c.a #15	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987.n.a #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Long-tailed chinchilla	MODERN SPECIES	122	VSX1 (ENSCLAG00000015160) #9	ACSS1 (ENSCLAG00000012190) #10	APMAP (ENSCLAG00000013445) #11	CST7 (ENSCLAG00000015428) #12	SYNDIG1 (ENSCLAG00000012586) #13	ENSCLAG00000012454 #14	ENSCLAG00000015899 #14	ENSCLAG00000017066 #16	ENSCLAG00000015212 #17	ENSCLAG00000015474 #18	ENSCLAG00000011384	CSTL1 (ENSCLAG00000012446)	NAPB (ENSCLAG00000011540) #19	GZF1 (ENSCLAG00000014714) #20	NXT1 (ENSCLAG00000012493) #21	CD93 (ENSCLAG00000012062) #22	THBD (ENSCLAG00000011994)	FOXA2 (ENSCLAG00000014548) #24	PAX1 (ENSCLAG00000016362) #25	NKX2-2 (ENSCLAG00000016430) #26	XRN2 (ENSCLAG00000013419) #28	KIZ (ENSCLAG00000012565)	RALGAPA2 (ENSCLAG00000012502) #30	CFAP61 (ENSCLAG00000014155) #34	CRNKL1 (ENSCLAG00000013859) #35	NAA20 (ENSCLAG00000014313) #36	RIN2 (ENSCLAG00000015234) #37	SLC24A3 (ENSCLAG00000015547)	DTD1 (ENSCLAG00000015302)	SEC23B (ENSCLAG00000014924)	RBBP9 (ENSCLAG00000014851)
Degu	MODERN SPECIES	114	VSX1 (ENSODEG00000010102) #9	ACSS1 (ENSODEG00000010733) #10	APMAP (ENSODEG00000010678) #11	CST7 (ENSODEG00000011264) #12	SYNDIG1 (ENSODEG00000012369) #13	ENSODEG00000019797	CST3 (ENSODEG00000012334) #15	ENSODEG00000010611 #16	ENSODEG00000010448 #17	ENSODEG00000012595 #18	CST11 (ENSODEG00000013274)	CSTL1 (ENSODEG00000010719)	NAPB (ENSODEG00000011065) #19	GZF1 (ENSODEG00000013020) #20	NXT1 (ENSODEG00000019900) #21	CD93 (ENSODEG00000012518) #22	THBD (ENSODEG00000010709)	FOXA2 (ENSODEG00000011162) #24	PAX1 (ENSODEG00000012427) #25	ENSODEG00000019878	ENSODEG00000019885	NKX2-2 (ENSODEG00000012371) #26	ENSODEG00000012687	NKX2-4 (ENSODEG00000010842) #27	ENSODEG00000010745 #28	ENSODEG00000011188	KIZ (ENSODEG00000011491)	RALGAPA2 (ENSODEG00000011023) #30	INSM1 (ENSODEG00000020028) #31	ENSODEG00000011346 #32	ENSODEG00000012124 #34
Guinea pig	MODERN SPECIES	8	APMAP (ENSCPOG00000008131) #11	CST7 (ENSCPOG00000008022) #12	SYNDIG1 (ENSCPOG00000004943) #13	ENSCPOG00000026799 #14	ENSCPOG00000030984 #14	ENSCPOG00000030716 #15	ENSCPOG00000025294	ENSCPOG00000021926 #16	CST8 (ENSCPOG00000005550) #17	ENSCPOG00000025993 #18	ENSCPOG00000003822	CSTL1 (ENSCPOG00000008734)	NAPB (ENSCPOG00000039063) #19	GZF1 (ENSCPOG00000010790) #20	NXT1 (ENSCPOG00000008817) #21	CD93 (ENSCPOG00000010252) #22	THBD (ENSCPOG00000030575)	FOXA2 (ENSCPOG00000033370) #24	PAX1 (ENSCPOG00000002886) #25	NKX2-2 (ENSCPOG00000000408) #26	XRN2 (ENSCPOG00000009407) #28	KIZ (ENSCPOG00000005683)	RALGAPA2 (ENSCPOG00000001602) #30	ENSCPOG00000038064 #32	ENSCPOG00000039658 #34	ENSCPOG00000001594 #34	CRNKL1 (ENSCPOG00000004418) #35	NAA20 (ENSCPOG00000001593) #36	RIN2 (ENSCPOG00000013179) #37	SLC24A3 (ENSCPOG00000011970)	DTD1 (ENSCPOG00000002416)
Lagomorpha	ANCESTRAL SPECIES	57							ENSGT00940000154755.c.a #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.B ##18	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00390000006916.c	ENSGT00390000014861
Rabbit	MODERN SPECIES	15	ENSOCUG00000008071 #15	ENSOCUG00000036359	ENSOCUG00000032386	ENSOCUG00000021033	ENSOCUG00000024585	ENSOCUG00000029526	ENSOCUG00000026263 #16	CST8 (ENSOCUG00000024979) #17	ENSOCUG00000027150 ##18	CSTL1 (ENSOCUG00000024430)	ENSOCUG00000025538	NAPB (ENSOCUG00000009263) #19	ENSOCUG00000025214 #20	NXT1 (ENSOCUG00000025924) #21	ENSOCUG00000024138	CD93 (ENSOCUG00000014812) #22	FOXA2 (ENSOCUG00000007368) #24	PAX1 (ENSOCUG00000003276) #25	NKX2-2 (ENSOCUG00000007166) #26	ENSOCUG00000024195	XRN2 (ENSOCUG00000013468) #28	KIZ (ENSOCUG00000013848)	RALGAPA2 (ENSOCUG00000017951) #30	CFAP61 (ENSOCUG00000015506) #34	CRNKL1 (ENSOCUG00000015484) #35	NAA20 (ENSOCUG00000015481) #36	RIN2 (ENSOCUG00000015450) #37	SLC24A3 (ENSOCUG00000009833)	ENSOCUG00000035674	SCP2D1 (ENSOCUG00000010991)	DTD1 (ENSOCUG00000010988)
Pika	MODERN SPECIES	6732															NXT1 (ENSOPRG00000006167) #21	CD93 (ENSOPRG00000006161) #22	FOXA2 (ENSOPRG00000006139) #24
Tree shrew	MODERN SPECIES	1130																CD93 (ENSTBEG00000014371) #22
Primates	ANCESTRAL SPECIES	17	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000164098	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Lemuriformes	ANCESTRAL SPECIES	44	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755.c.b #14	ENSGT00940000154755.c.a #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000164098	ENSGT00940000162294 #17	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Mouse lemur	MODERN SPECIES	9	VSX1 (ENSMICG00000002047) #9	ACSS1 (ENSMICG00000002040) #10	APMAP (ENSMICG00000002038) #11	CST7 (ENSMICG00000002037) #12	SYNDIG1 (ENSMICG00000027578) #13	ENSMICG00000032368	ENSMICG00000043235 #14	ENSMICG00000004617 #15	CST9 (ENSMICG00000047052)	CST8 (ENSMICG00000017905) #17	CST11 (ENSMICG00000017904)	CSTL1 (ENSMICG00000017903)	NAPB (ENSMICG00000017902) #19	GZF1 (ENSMICG00000046070) #20	NXT1 (ENSMICG00000044853) #21	CD93 (ENSMICG00000017898) #22	FOXA2 (ENSMICG00000030588) #24	PAX1 (ENSMICG00000016968) #25	NKX2-2 (ENSMICG00000045009) #26	NKX2-4 (ENSMICG00000032695) #27	XRN2 (ENSMICG00000008126) #28	KIZ (ENSMICG00000008114)	RALGAPA2 (ENSMICG00000006077) #30	INSM1 (ENSMICG00000037992) #31	CFAP61 (ENSMICG00000006057) #34	CRNKL1 (ENSMICG00000006048) #35	ENSMICG00000006044 #36	RIN2 (ENSMICG00000006035) #37	SLC24A3 (ENSMICG00000006014)	DTD1 (ENSMICG00000010771)	ENSMICG00000010750
Lemuriformes_a	ANCESTRAL SPECIES	137					ENSGT00940000154755.c.a #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000164098	ENSGT00940000162294 #17	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Coquerels sifaka	MODERN SPECIES	560						ENSPCOG00000018222	ENSPCOG00000001285	CST3 (ENSPCOG00000027602) #15	CST9L (ENSPCOG00000008034)	CST8 (ENSPCOG00000017881) #17	CST11 (ENSPCOG00000025724)	CSTL1 (ENSPCOG00000016553)	NAPB (ENSPCOG00000022495) #19	GZF1 (ENSPCOG00000024180) #20	NXT1 (ENSPCOG00000025624) #21	CD93 (ENSPCOG00000022300) #22	FOXA2 (ENSPCOG00000001633) #24	PAX1 (ENSPCOG00000027636) #25	NKX2-2 (ENSPCOG00000016151) #26
Greater bamboo lemur	MODERN SPECIES	878							ENSPSMG00000008949	ENSPSMG00000008941 #16	CST8 (ENSPSMG00000008931) #17	ENSPSMG00000008923 ##18	CST11 (ENSPSMG00000008919)	CSTL1 (ENSPSMG00000008917)	NAPB (ENSPSMG00000008819) #19	GZF1 (ENSPSMG00000008681) #20	NXT1 (ENSPSMG00000008668) #21	CD93 (ENSPSMG00000008660) #22	THBD (ENSPSMG00000008649)	SSTR4 (ENSPSMG00000008634) #23	FOXA2 (ENSPSMG00000008622) #24	PAX1 (ENSPSMG00000008610) #25	NKX2-2 (ENSPSMG00000008596) #26	NKX2-4 (ENSPSMG00000008590) #27	XRN2 (ENSPSMG00000008572) #28	KIZ (ENSPSMG00000008514)	ENSPSMG00000008491	RALGAPA2 (ENSPSMG00000008474) #30	INSM1 (ENSPSMG00000008427) #31
Bushbaby	MODERN SPECIES	251													NAPB (ENSOGAG00000012607) #19	GZF1 (ENSOGAG00000028389) #20	NXT1 (ENSOGAG00000000717) #21	CD93 (ENSOGAG00000017109) #22	THBD (ENSOGAG00000026061)	SSTR4 (ENSOGAG00000017105) #23	ENSOGAG00000025509	FOXA2 (ENSOGAG00000033297) #24	PAX1 (ENSOGAG00000033162) #25	NKX2-2 (ENSOGAG00000029474) #26	ENSOGAG00000025951	NKX2-4 (ENSOGAG00000024342) #27	XRN2 (ENSOGAG00000001068) #28	KIZ (ENSOGAG00000010591)	RALGAPA2 (ENSOGAG00000011557) #30	INSM1 (ENSOGAG00000034802) #31	ENSOGAG00000031837	CFAP61 (ENSOGAG00000011546) #34	CRNKL1 (ENSOGAG00000011544) #35
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Tarsier	MODERN SPECIES	4780										CST9 (ENSTSYG00000029266)	CST8 (ENSTSYG00000000658) #17	CST11 (ENSTSYG00000000187)	NAPB (ENSTSYG00000008750) #19	GZF1 (ENSTSYG00000028054) #20	NXT1 (ENSTSYG00000007592) #21	CD93 (ENSTSYG00000006459) #22	SSTR4 (ENSTSYG00000000585) #23
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000164560	ENSGT00940000163410	ENSGT00860000135650	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000163410.a.a	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Hominidae	ANCESTRAL SPECIES	18	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00910000148254	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35
Gorilla	MODERN SPECIES	444															ENSGGOG00000042714	CD93 (ENSGGOG00000044219) #22
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00910000148254	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35
Human	MODERN SPECIES	12	SYNDIG1 (ENSG00000101463) #13	GGTLC1 (ENSG00000149435)	CST5 (ENSG00000170367)	CST2 (ENSG00000170369)	CST1 (ENSG00000170373)	CST4 (ENSG00000101441)	CST3 (ENSG00000101439) ##15	CST9 (ENSG00000173335)	CST9L (ENSG00000101435)	CST8 (ENSG00000125815) #17	CST11 (ENSG00000125831)	CSTL1 (ENSG00000125823)	NAPB (ENSG00000125814) #19	GZF1 (ENSG00000125812) #20	NXT1 (ENSG00000132661) #21	CD93 (ENSG00000125810) #22	THBD (ENSG00000178726)	SSTR4 (ENSG00000132671) #23	FOXA2 (ENSG00000125798) #24	PAX1 (ENSG00000125813) #25	NKX2-2 (ENSG00000125820) #26	NKX2-4 (ENSG00000125816) #27	XRN2 (ENSG00000088930) #28	KIZ (ENSG00000088970)	RALGAPA2 (ENSG00000188559) #30	INSM1 (ENSG00000173404) #31	CFAP61 (ENSG00000089101) #34	CRNKL1 (ENSG00000101343) #35	NAA20 (ENSG00000173418) #36	RIN2 (ENSG00000132669) #37	SLC24A3 (ENSG00000185052)
Pan	ANCESTRAL SPECIES	15	ENSGT00860000135650	ENSGT00940000163410.a.b.a	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041.g #21	ENSGT00910000147439	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146844.a.b	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00910000148254	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36
Bonobo	MODERN SPECIES	11	ENSPPAG00000038530	CST4 (ENSPPAG00000035722)	CST3 (ENSPPAG00000041092) ##15	CST9 (ENSPPAG00000037364)	CST9L (ENSPPAG00000033681)	ENSPPAG00000035983	ENSPPAG00000039408 #16	CST8 (ENSPPAG00000037606) #17	ENSPPAG00000034245 #18	CST11 (ENSPPAG00000025372)	CSTL1 (ENSPPAG00000038564)	NAPB (ENSPPAG00000043876) #19	GZF1 (ENSPPAG00000028487) #20	NXT1 (ENSPPAG00000020479) #21	ENSPPAG00000024534	CD93 (ENSPPAG00000040099) #22	THBD (ENSPPAG00000018179)	SSTR4 (ENSPPAG00000036986) #23	ENSPPAG00000031368 #24	ENSPPAG00000024066	ENSPPAG00000043307	PAX1 (ENSPPAG00000035911) #25	NKX2-2 (ENSPPAG00000039042) #26	ENSPPAG00000037349	XRN2 (ENSPPAG00000033549) #28	KIZ (ENSPPAG00000031020)	RALGAPA2 (ENSPPAG00000039422) #30	ENSPPAG00000036172 #34	CRNKL1 (ENSPPAG00000027847) #35	NAA20 (ENSPPAG00000016439) #36	RIN2 (ENSPPAG00000037433) #37
Chimpanzee	MODERN SPECIES	11	ENSPTRG00000049771	CST1 (ENSPTRG00000013329)	CST3 (ENSPTRG00000046564) ##15	CST9 (ENSPTRG00000013326)	CST9L (ENSPTRG00000013325)	ENSPTRG00000047084	ENSPTRG00000050976 #16	CST8 (ENSPTRG00000013324) #17	ENSPTRG00000045117 #18	CST11 (ENSPTRG00000013323)	CSTL1 (ENSPTRG00000045776)	NAPB (ENSPTRG00000013321) #19	GZF1 (ENSPTRG00000013320) #20	NXT1 (ENSPTRG00000013319) #21	ENSPTRG00000046209	CD93 (ENSPTRG00000013318) #22	THBD (ENSPTRG00000013317)	SSTR4 (ENSPTRG00000013316) #23	FOXA2 (ENSPTRG00000048023) #24	ENSPTRG00000045139	ENSPTRG00000044291	PAX1 (ENSPTRG00000013311) #25	NKX2-2 (ENSPTRG00000013310) #26	NKX2-4 (ENSPTRG00000013309) #27	ENSPTRG00000047508	XRN2 (ENSPTRG00000013308) #28	ENSPTRG00000044546	KIZ (ENSPTRG00000046348)	RALGAPA2 (ENSPTRG00000013306) #30	CFAP61 (ENSPTRG00000013301) #34	CRNKL1 (ENSPTRG00000030609) #35
Orangutan	MODERN SPECIES	11	CST4 (ENSPPYG00000011266)	ENSPPYG00000039032	CST3 (ENSPPYG00000010776) ##15	CST9 (ENSPPYG00000010775)	CST9L (ENSPPYG00000010773)	ENSPPYG00000010772	ENSPPYG00000010771 #16	CST8 (ENSPPYG00000010770) #17	ENSPPYG00000037632 #18	CST11 (ENSPPYG00000010769)	CSTL1 (ENSPPYG00000010768)	NAPB (ENSPPYG00000010767) #19	GZF1 (ENSPPYG00000010766) #20	NXT1 (ENSPPYG00000010765) #21	ENSPPYG00000010764	CD93 (ENSPPYG00000010763) #22	THBD (ENSPPYG00000010762)	SSTR4 (ENSPPYG00000010761) #23	FOXA2 (ENSPPYG00000040463) #24	PAX1 (ENSPPYG00000010758) #25	NKX2-2 (ENSPPYG00000010757) #26	NKX2-4 (ENSPPYG00000010756) #27	XRN2 (ENSPPYG00000010755) #28	KIZ (ENSPPYG00000010754)	RALGAPA2 (ENSPPYG00000010751) #30	INSM1 (ENSPPYG00000010750) #31	CFAP61 (ENSPPYG00000010748) #34	CRNKL1 (ENSPPYG00000010747) #35	NAA20 (ENSPPYG00000010746) #36	RIN2 (ENSPPYG00000010745) #37	SLC24A3 (ENSPPYG00000010743)
Gibbon	MODERN SPECIES	3	ACSS1 (ENSNLEG00000015554) #10	APMAP (ENSNLEG00000032557) #11	CST7 (ENSNLEG00000015525) #12	SYNDIG1 (ENSNLEG00000015521) #13	CST5 (ENSNLEG00000015517)	CST2 (ENSNLEG00000036132)	CST3 (ENSNLEG00000035405) ##15	CST9 (ENSNLEG00000011616)	CST8 (ENSNLEG00000011607) #17	ENSNLEG00000033018 #18	CST11 (ENSNLEG00000011603)	CSTL1 (ENSNLEG00000011597)	NAPB (ENSNLEG00000027099) #19	GZF1 (ENSNLEG00000011565) #20	ENSNLEG00000033556	CD93 (ENSNLEG00000011559) #22	THBD (ENSNLEG00000011558)	SSTR4 (ENSNLEG00000018627) #23	ENSNLEG00000031709	ENSNLEG00000031487 #24	PAX1 (ENSNLEG00000010049) #25	NKX2-2 (ENSNLEG00000010048) #26	ENSNLEG00000010047 #27	XRN2 (ENSNLEG00000009991) #28	KIZ (ENSNLEG00000009954)	ENSNLEG00000033115	RALGAPA2 (ENSNLEG00000009931) #30	CFAP61 (ENSNLEG00000009893) #34	ENSNLEG00000009862 #35	NAA20 (ENSNLEG00000028442) #36	RIN2 (ENSNLEG00000009844) #37
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000164560	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000164560	ENSGT00940000164098.a.a	ENSGT00940000164098.a.b	ENSGT00940000161877	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00940000161877.h	ENSGT00940000164098.a.b	ENSGT00860000135650.a	ENSGT00940000154755.d ##15	ENSGT00940000163410	ENSGT00940000164098.a.a	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36
Macaca	ANCESTRAL SPECIES	16	ENSGT00940000154755.d ##15	ENSGT00860000135650.a	ENSGT00940000163410	ENSGT00940000164098.a.a	ENSGT00940000161877.g.b	ENSGT00940000166721	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36
Pig-tailed macaque	MODERN SPECIES	130	CST5 (ENSMNEG00000039359)	CST9L (ENSMNEG00000032753)	ENSMNEG00000044989	CST3 (ENSMNEG00000032382) ##15	ENSMNEG00000039431	ENSMNEG00000039062	CST9 (ENSMNEG00000039807)	CST8 (ENSMNEG00000037697) #17	ENSMNEG00000032864 #18	CST11 (ENSMNEG00000041474)	CSTL1 (ENSMNEG00000044944)	NAPB (ENSMNEG00000036841) #19	GZF1 (ENSMNEG00000033117) #20	NXT1 (ENSMNEG00000027745) #21	ENSMNEG00000024687	CD93 (ENSMNEG00000042460) #22	SSTR4 (ENSMNEG00000038323) #23	FOXA2 (ENSMNEG00000011763) #24	ENSMNEG00000028347	PAX1 (ENSMNEG00000040896) #25	NKX2-2 (ENSMNEG00000045238) #26	NKX2-4 (ENSMNEG00000028280) #27	XRN2 (ENSMNEG00000040626) #28	KIZ (ENSMNEG00000028617)	ENSMNEG00000039122	RALGAPA2 (ENSMNEG00000033398) #30	INSM1 (ENSMNEG00000029140) #31	CFAP61 (ENSMNEG00000036910) #34	CRNKL1 (ENSMNEG00000037490) #35	NAA20 (ENSMNEG00000033202) #36	RIN2 (ENSMNEG00000005068) #37
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00940000163410.c	ENSGT00940000154755.d ##15	ENSGT00860000135650.a	ENSGT00940000163410.d	ENSGT00940000164098.a.a	ENSGT00940000166721.a	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Rhesus	MODERN SPECIES	1	CST9L (ENSMMUG00000045312)	ENSMMUG00000063629	ENSMMUG00000050726	CST3 (ENSMMUG00000050596) ##15	ENSMMUG00000046980	CST9 (ENSMMUG00000039259)	ENSMMUG00000063687	ENSMMUG00000059402 #16	CST8 (ENSMMUG00000016489) #17	ENSMMUG00000016490 #18	CST11 (ENSMMUG00000022393)	CSTL1 (ENSMMUG00000055975)	NAPB (ENSMMUG00000022388) #19	GZF1 (ENSMMUG00000022387) #20	NXT1 (ENSMMUG00000022386) #21	CD93 (ENSMMUG00000016813) #22	THBD (ENSMMUG00000016814)	SSTR4 (ENSMMUG00000016815) #23	FOXA2 (ENSMMUG00000010410) #24	PAX1 (ENSMMUG00000019409) #25	ENSMMUG00000056728 #26	NKX2-4 (ENSMMUG00000011409) #27	XRN2 (ENSMMUG00000011405) #28	KIZ (ENSMMUG00000002060)	RALGAPA2 (ENSMMUG00000018371) #30	INSM1 (ENSMMUG00000039294) #31	CFAP61 (ENSMMUG00000042668) #34	CRNKL1 (ENSMMUG00000007709) #35	NAA20 (ENSMMUG00000007708) #36	RIN2 (ENSMMUG00000010114) #37	ENSMMUG00000051129
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000032358	CST3 (ENSMFAG00000062094) ##15	ENSMFAG00000001311	ENSMFAG00000051852	ENSMFAG00000055858	ENSMFAG00000061186 #16	CST8 (ENSMFAG00000033001) #17	ENSMFAG00000032810 #18	CST11 (ENSMFAG00000038093)	CSTL1 (ENSMFAG00000057818)	NAPB (ENSMFAG00000012865) #19	ENSMFAG00000058516	GZF1 (ENSMFAG00000042408) #20	NXT1 (ENSMFAG00000065310) #21	ENSMFAG00000026040	CD93 (ENSMFAG00000043644) #22	SSTR4 (ENSMFAG00000017458) #23	FOXA2 (ENSMFAG00000047214) #24	ENSMFAG00000057184	PAX1 (ENSMFAG00000044435) #25	NKX2-2 (ENSMFAG00000044462) #26	XRN2 (ENSMFAG00000038122) #28	KIZ (ENSMFAG00000036086)	RALGAPA2 (ENSMFAG00000039275) #30	CFAP61 (ENSMFAG00000040250) #34	CRNKL1 (ENSMFAG00000039893) #35	RIN2 (ENSMFAG00000002995) #37	ENSMFAG00000065169	SLC24A3 (ENSMFAG00000037051)	SCP2D1 (ENSMFAG00000050245)	ENSMFAG00000034375
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00940000166721	ENSGT00940000161877.h	ENSGT00940000164098.a.b	ENSGT00940000154755.d ##15	ENSGT00860000135650.a	ENSGT00940000163410	ENSGT00940000164098.a.a	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36
Olive baboon	MODERN SPECIES	7	SYNDIG1 (ENSPANG00000047245) #13	ENSPANG00000048046	APMAP (ENSPANG00000051418) #11	CST7 (ENSPANG00000042634) #12	ACSS1 (ENSPANG00000017910) #10	VSX1 (ENSPANG00000021775) #9	ENTPD6 (ENSPANG00000026175) #8	ENSPANG00000045994	PYGB (ENSPANG00000024585) #7	ABHD12 (ENSPANG00000001312)	GINS1 (ENSPANG00000032488)	NINL (ENSPANG00000016039)	ENSPANG00000044377	NANP (ENSPANG00000031862)	ENSPANG00000048820	CD93 (ENSPANG00000018432) #22	THBD (ENSPANG00000046781)	SSTR4 (ENSPANG00000004090) #23	ENSPANG00000044373	FOXA2 (ENSPANG00000011847) #24	PAX1 (ENSPANG00000008282) #25	ENSPANG00000043988 #26	NKX2-4 (ENSPANG00000014236) #27	XRN2 (ENSPANG00000018088) #28	KIZ (ENSPANG00000025535)	ENSPANG00000050604	RALGAPA2 (ENSPANG00000018089) #30	ENSPANG00000046512	CFAP61 (ENSPANG00000024586) #34	ENSPANG00000045223	CRNKL1 (ENSPANG00000017420) #35
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00940000166721	ENSGT00940000161877.h	ENSGT00940000164098.a.b	ENSGT00940000163410	ENSGT00860000135650.a	ENSGT00940000154755.d ##15	ENSGT00940000164098.a.a	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183087.A.a.b.b.g.e.b.a.b	ENSGT00940000156996 #22	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Sooty mangabey	MODERN SPECIES	602	CST9L (ENSCATG00000032932)	ENSCATG00000035179	ENSCATG00000035785	ENSCATG00000036042	CST3 (ENSCATG00000032215) ##15	ENSCATG00000043016	ENSCATG00000033110	CST8 (ENSCATG00000033479) #17	ENSCATG00000043404 #18	CST11 (ENSCATG00000042927)	CSTL1 (ENSCATG00000031751)	NAPB (ENSCATG00000042262) #19	GZF1 (ENSCATG00000039279) #20	NXT1 (ENSCATG00000019026) #21	ENSCATG00000019258	CD93 (ENSCATG00000009216) #22	SSTR4 (ENSCATG00000019242) #23	FOXA2 (ENSCATG00000033454) #24	ENSCATG00000022190	PAX1 (ENSCATG00000029185) #25	NKX2-2 (ENSCATG00000041599) #26	NKX2-4 (ENSCATG00000023019) #27	XRN2 (ENSCATG00000040350) #28	KIZ (ENSCATG00000042535)	ENSCATG00000043761	RALGAPA2 (ENSCATG00000035357) #30	INSM1 (ENSCATG00000037816) #31	CFAP61 (ENSCATG00000043610) #34	CRNKL1 (ENSCATG00000034247) #35	NAA20 (ENSCATG00000027935) #36	RIN2 (ENSCATG00000042503) #37
Drill	MODERN SPECIES	1652															ENSMLEG00000027361	CD93 (ENSMLEG00000031294) #22	FOXA2 (ENSMLEG00000030410) #24
Vervet Monkey	MODERN SPECIES	11	IDH3B (ENSCSAG00000010969)	EBF4 (ENSCSAG00000010974)	CPXM1 (ENSCSAG00000010982)	SYNDIG1 (ENSCSAG00000010985) #13	CST5 (ENSCSAG00000010994)	ENSCSAG00000011001	ENSCSAG00000011012	CST9L (ENSCSAG00000011017)	ENSCSAG00000011022	ENSCSAG00000011025	CST3 (ENSCSAG00000011027) ##15	ENSCSAG00000011032	ENSCSAG00000011037	GZF1 (ENSCSAG00000011054) #20	NXT1 (ENSCSAG00000018678) #21	CD93 (ENSCSAG00000011058) #22	THBD (ENSCSAG00000018677)	SSTR4 (ENSCSAG00000018676) #23	FOXA2 (ENSCSAG00000011062) #24	PAX1 (ENSCSAG00000011068) #25	NKX2-2 (ENSCSAG00000011072) #26	NKX2-4 (ENSCSAG00000011080) #27	XRN2 (ENSCSAG00000011094) #28	KIZ (ENSCSAG00000011135)	RALGAPA2 (ENSCSAG00000011248) #30	INSM1 (ENSCSAG00000018675) #31	CFAP61 (ENSCSAG00000011382) #34	CRNKL1 (ENSCSAG00000011434) #35	NAA20 (ENSCSAG00000011440) #36	RIN2 (ENSCSAG00000011446) #37	ENSCSAG00000011450
Rhinopithecus	ANCESTRAL SPECIES	176								ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000155999 #24	ENSGT00950000183087.A.b.b	ENSGT00910000146941	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183105.A.m.b	ENSGT00950000183139.A #30	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Golden snub-nosed monkey	MODERN SPECIES	1446									CST8 (ENSRROG00000030761) #17	ENSRROG00000037494 #18	CST11 (ENSRROG00000029851)	CSTL1 (ENSRROG00000032535)	NAPB (ENSRROG00000044287) #19	GZF1 (ENSRROG00000030533) #20	NXT1 (ENSRROG00000026657) #21	CD93 (ENSRROG00000012087) #22	FOXA2 (ENSRROG00000024272) #24	ENSRROG00000030464	ENSRROG00000040808	PAX1 (ENSRROG00000038854) #25	NKX2-2 (ENSRROG00000041150) #26	NKX2-4 (ENSRROG00000006364) #27	XRN2 (ENSRROG00000044400) #28	ENSRROG00000030791	ENSRROG00000041676	RALGAPA2 (ENSRROG00000037467) #30	CFAP61 (ENSRROG00000040251) #34	CRNKL1 (ENSRROG00000040450) #35	NAA20 (ENSRROG00000036514) #36
Black snub-nosed monkey	MODERN SPECIES	2074								ENSRBIG00000033700 #16	CST8 (ENSRBIG00000044719) #17	ENSRBIG00000044901 #18	CST11 (ENSRBIG00000037634)	CSTL1 (ENSRBIG00000038994)	NAPB (ENSRBIG00000040673) #19	GZF1 (ENSRBIG00000028715) #20	NXT1 (ENSRBIG00000021433) #21	CD93 (ENSRBIG00000006468) #22	ENSRBIG00000025242	CDH8 (ENSRBIG00000030891)
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Cebidae	ANCESTRAL SPECIES	13	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000164560	ENSGT00940000163410	ENSGT00940000154755.d ##15	ENSGT00940000164098	ENSGT00940000161877	ENSGT00940000162294 #17	ENSGT00940000162636.A #18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Capuchin	MODERN SPECIES	134	APMAP (ENSCCAG00000023838) #11	CST7 (ENSCCAG00000027578) #12	SYNDIG1 (ENSCCAG00000028638) #13	CST5 (ENSCCAG00000034182)	ENSCCAG00000033223	CST3 (ENSCCAG00000001843) ##15	CST9 (ENSCCAG00000024829)	CST9L (ENSCCAG00000026509)	CST8 (ENSCCAG00000024862) #17	ENSCCAG00000037786 #18	CST11 (ENSCCAG00000035766)	CSTL1 (ENSCCAG00000033212)	NAPB (ENSCCAG00000029344) #19	GZF1 (ENSCCAG00000035601) #20	NXT1 (ENSCCAG00000015478) #21	CD93 (ENSCCAG00000034013) #22	THBD (ENSCCAG00000020711)	SSTR4 (ENSCCAG00000019059) #23	FOXA2 (ENSCCAG00000027576) #24	PAX1 (ENSCCAG00000025569) #25	NKX2-2 (ENSCCAG00000035862) #26	NKX2-4 (ENSCCAG00000032197) #27	ENSCCAG00000036857 #28	KIZ (ENSCCAG00000031682)	RALGAPA2 (ENSCCAG00000028362) #30	INSM1 (ENSCCAG00000023181) #31	CFAP61 (ENSCCAG00000026777) #34	CRNKL1 (ENSCCAG00000027037) #35	NAA20 (ENSCCAG00000028274) #36
Bolivian squirrel monkey	MODERN SPECIES	211	APMAP (ENSSBOG00000035251) #11	CST7 (ENSSBOG00000021587) #12	SYNDIG1 (ENSSBOG00000023812) #13	CST5 (ENSSBOG00000022942)	ENSSBOG00000028716	CST3 (ENSSBOG00000030007) ##15	CST9 (ENSSBOG00000020759)	CST9L (ENSSBOG00000020799)	CST8 (ENSSBOG00000021877) #17	ENSSBOG00000025115 #18	CST11 (ENSSBOG00000025613)	CSTL1 (ENSSBOG00000006474)	NAPB (ENSSBOG00000019980) #19	GZF1 (ENSSBOG00000018893) #20	NXT1 (ENSSBOG00000036378) #21	CD93 (ENSSBOG00000018965) #22	SSTR4 (ENSSBOG00000013012) #23	FOXA2 (ENSSBOG00000024799) #24
Marmoset	MODERN SPECIES	17	CST7 (ENSCJAG00000048473) #12	APMAP (ENSCJAG00000085161) #11	SYNDIG1 (ENSCJAG00000046278) #13	CST5 (ENSCJAG00000037422)	ENSCJAG00000000676	CST3 (ENSCJAG00000036809) ##15	CST9 (ENSCJAG00000084681)	ENSCJAG00000078884 #16	CST8 (ENSCJAG00000000697) #17	ENSCJAG00000074097 #18	CST11 (ENSCJAG00000080392)	CSTL1 (ENSCJAG00000041540)	NAPB (ENSCJAG00000000712) #19	GZF1 (ENSCJAG00000000733) #20	NXT1 (ENSCJAG00000044836) #21	CD93 (ENSCJAG00000005796) #22	THBD (ENSCJAG00000005795)	FOXA2 (ENSCJAG00000005785) #24	ENSCJAG00000070048	ENSCJAG00000075555	PAX1 (ENSCJAG00000005773) #25	ENSCJAG00000070559	ENSCJAG00000076879	ENSCJAG00000051781 #26	ENSCJAG00000081459	NKX2-4 (ENSCJAG00000040336) #27	XRN2 (ENSCJAG00000005611) #28	KIZ (ENSCJAG00000005568)	RALGAPA2 (ENSCJAG00000005471) #30	INSM1 (ENSCJAG00000040556) #31	CFAP61 (ENSCJAG00000005444) #34
Mas night monkey	MODERN SPECIES	720																CD93 (ENSANAG00000031974) #22	SSTR4 (ENSANAG00000031033) #23	FOXA2 (ENSANAG00000000151) #24	PAX1 (ENSANAG00000031911) #25	NKX2-2 (ENSANAG00000031496) #26	NKX2-4 (ENSANAG00000025954) #27	XRN2 (ENSANAG00000020126) #28	KIZ (ENSANAG00000030324)	RALGAPA2 (ENSANAG00000035297) #30	ENSANAG00000025204	INSM1 (ENSANAG00000021754) #31	ENSANAG00000026688 #34	ENSANAG00000033104 #34	ENSANAG00000023984	CRNKL1 (ENSANAG00000024889) #35	ENSANAG00000021111 #36
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Suina	ANCESTRAL SPECIES	9	ENSGT00940000160793 #9	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Chacoan peccary	MODERN SPECIES	801	VSX1 (ENSCWAG00000016751) #9	ACSS1 (ENSCWAG00000016802) #10	APMAP (ENSCWAG00000016906) #11	CST7 (ENSCWAG00000016930) #12	SYNDIG1 (ENSCWAG00000016959) #13	CST3 (ENSCWAG00000016979) #15	ENSCWAG00000017004	ENSCWAG00000017060 #16	CST8 (ENSCWAG00000017086) #17	ENSCWAG00000017127	CST11 (ENSCWAG00000017158)	CSTL1 (ENSCWAG00000017189)	NAPB (ENSCWAG00000017225) #19	GZF1 (ENSCWAG00000017910) #20	NXT1 (ENSCWAG00000017956) #21	CD93 (ENSCWAG00000017965) #22	THBD (ENSCWAG00000017996)	FOXA2 (ENSCWAG00000007985) #24	PAX1 (ENSCWAG00000008052) #25	NKX2-2 (ENSCWAG00000008122) #26	NKX2-4 (ENSCWAG00000008162) #27	XRN2 (ENSCWAG00000008201) #28	KIZ (ENSCWAG00000008351)	RALGAPA2 (ENSCWAG00000008863) #30	INSM1 (ENSCWAG00000009223) #31	CFAP61 (ENSCWAG00000009261) #34	CRNKL1 (ENSCWAG00000009575) #35	NAA20 (ENSCWAG00000009645) #36	ENSCWAG00000009830 #37	SLC24A3 (ENSCWAG00000009885)	SCP2D1 (ENSCWAG00000010002)
Pig	MODERN SPECIES	8	VSX1 (ENSSSCG00000023887) #9	ACSS1 (ENSSSCG00000007133) #10	APMAP (ENSSSCG00000036286) #11	CST7 (ENSSSCG00000007131) #12	SYNDIG1 (ENSSSCG00000007130) #13	CST3 (ENSSSCG00000037360) #15	CST9L (ENSSSCG00000029289)	ENSSSCG00000007125 #16	ENSSSCG00000007124 #17	ENSSSCG00000007123	CST11 (ENSSSCG00000007122)	CSTL1 (ENSSSCG00000007121)	NAPB (ENSSSCG00000031219) #19	GZF1 (ENSSSCG00000007117) #20	NXT1 (ENSSSCG00000007119) #21	CD93 (ENSSSCG00000007116) #22	THBD (ENSSSCG00000053422)	FOXA2 (ENSSSCG00000007114) #24	PAX1 (ENSSSCG00000007112) #25	NKX2-2 (ENSSSCG00000040017) #26	NKX2-4 (ENSSSCG00000007110) #27	XRN2 (ENSSSCG00000007109) #28	KIZ (ENSSSCG00000007108)	ENSSSCG00000048962	RALGAPA2 (ENSSSCG00000026506) #30	INSM1 (ENSSSCG00000062159) #31	CFAP61 (ENSSSCG00000038858) #34	CRNKL1 (ENSSSCG00000038587) #35	NAA20 (ENSSSCG00000028132) #36	ENSSSCG00000028004 #37	SLC24A3 (ENSSSCG00000007100)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Cetacea	ANCESTRAL SPECIES	3	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Odontoceti	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a #8	ENSGT00940000160793 #9	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a #8	ENSGT00940000160793 #9	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT01100000263540.A.a #8	ENSGT00940000160793 #9	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #35
Monodontidae	ANCESTRAL SPECIES	1	ENSGT01100000263540.A.a #8	ENSGT00940000160793 #9	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00390000014105.n	ENSGT00940000155255.q.b	ENSGT00550000074931 #35	ENSGT00550000075046 #36
Narwhal	MODERN SPECIES	299	PYGB (ENSMMNG00015013588) #7	ENTPD6 (ENSMMNG00015013636) #8	VSX1 (ENSMMNG00015013692) #9	ACSS1 (ENSMMNG00015013713) #10	APMAP (ENSMMNG00015013737) #11	CST7 (ENSMMNG00015013746) #12	SYNDIG1 (ENSMMNG00015013754) #13	CST3 (ENSMMNG00015013767) #15	ENSMMNG00015013782	ENSMMNG00015013807 #16	CST11 (ENSMMNG00015013816)	CSTL1 (ENSMMNG00015013827)	ENSMMNG00015013840 #19	GZF1 (ENSMMNG00015013857) #20	NXT1 (ENSMMNG00015013866) #21	CD93 (ENSMMNG00015013869) #22	THBD (ENSMMNG00015013881)	SSTR4 (ENSMMNG00015013888) #23	FOXA2 (ENSMMNG00015013909) #24	PAX1 (ENSMMNG00015013924) #25	NKX2-2 (ENSMMNG00015013937) #26	NKX2-4 (ENSMMNG00015013943) #27	XRN2 (ENSMMNG00015013954) #28	KIZ (ENSMMNG00015014032)	RALGAPA2 (ENSMMNG00015014137) #30	INSM1 (ENSMMNG00015014194) #31	CFAP61 (ENSMMNG00015014206) #34	ENSMMNG00015014237	ENSMMNG00015014247	CRNKL1 (ENSMMNG00015014256) #35	NAA20 (ENSMMNG00015014274) #36
Beluga whale	MODERN SPECIES	48	ENTPD6 (ENSDLEG00000004868) #8	VSX1 (ENSDLEG00000004879) #9	ACSS1 (ENSDLEG00000004910) #10	APMAP (ENSDLEG00000004961) #11	CST7 (ENSDLEG00000004970) #12	SYNDIG1 (ENSDLEG00000004982) #13	CST3 (ENSDLEG00000004985) #15	ENSDLEG00000005018	ENSDLEG00000005035 #16	ENSDLEG00000005044 ##18	CST11 (ENSDLEG00000005067)	CSTL1 (ENSDLEG00000005075)	ENSDLEG00000005080 #19	GZF1 (ENSDLEG00000005091) #20	NXT1 (ENSDLEG00000005096) #21	CD93 (ENSDLEG00000005100) #22	THBD (ENSDLEG00000005104)	SSTR4 (ENSDLEG00000005108) #23	FOXA2 (ENSDLEG00000005115) #24	PAX1 (ENSDLEG00000005123) #25	NKX2-2 (ENSDLEG00000005132) #26	NKX2-4 (ENSDLEG00000005154) #27	XRN2 (ENSDLEG00000005166) #28	KIZ (ENSDLEG00000005207)	RALGAPA2 (ENSDLEG00000005252) #30	CFAP61 (ENSDLEG00000005301) #34	ENSDLEG00000005319	ENSDLEG00000005324	CRNKL1 (ENSDLEG00000005333) #35	NAA20 (ENSDLEG00000005370) #36	RIN2 (ENSDLEG00000005378) #37
Vaquita	MODERN SPECIES	6	GINS1 (ENSPSNG00000009717)	ABHD12 (ENSPSNG00000009768)	PYGB (ENSPSNG00000009852) #7	ENTPD6 (ENSPSNG00000010051) #8	VSX1 (ENSPSNG00000010521) #9	ACSS1 (ENSPSNG00000010625) #10	APMAP (ENSPSNG00000010757) #11	CST7 (ENSPSNG00000010836) #12	SYNDIG1 (ENSPSNG00000010897) #13	CST3 (ENSPSNG00000010957) #15	ENSPSNG00000011009	ENSPSNG00000011147 #16	ENSPSNG00000011208 #19	GZF1 (ENSPSNG00000011314) #20	NXT1 (ENSPSNG00000011355) #21	CD93 (ENSPSNG00000011407) #22	THBD (ENSPSNG00000011441)	SSTR4 (ENSPSNG00000011467) #23	FOXA2 (ENSPSNG00000004696) #24	PAX1 (ENSPSNG00000004773) #25	NKX2-2 (ENSPSNG00000004832) #26	NKX2-4 (ENSPSNG00000004868) #27	XRN2 (ENSPSNG00000004918) #28	KIZ (ENSPSNG00000005041)	ENSPSNG00000005168 #30	ENSPSNG00000005197 #30	INSM1 (ENSPSNG00000005223) #31	ENSPSNG00000005235 #32	ENSPSNG00000005250 #34	ENSPSNG00000005292 #34	BLCAP (ENSPSNG00000005346)
Dolphin	MODERN SPECIES	4356																CD93 (ENSTTRG00000003436) #22	THBD (ENSTTRG00000003437)
Sperm whale	MODERN SPECIES	5	SCP2D1 (ENSPCTG00005011622)	SLC24A3 (ENSPCTG00005011433)	ENSPCTG00005011375 #37	NAA20 (ENSPCTG00005011278) #36	CRNKL1 (ENSPCTG00005011230) #35	CFAP61 (ENSPCTG00005011086) #34	INSM1 (ENSPCTG00005011042) #31	RALGAPA2 (ENSPCTG00005010848) #30	KIZ (ENSPCTG00005010162)	XRN2 (ENSPCTG00005010006) #28	NKX2-4 (ENSPCTG00005009959) #27	NKX2-2 (ENSPCTG00005009931) #26	PAX1 (ENSPCTG00005009858) #25	FOXA2 (ENSPCTG00005009780) #24	SSTR4 (ENSPCTG00005009716) #23	CD93 (ENSPCTG00005009671) #22	CST3 (ENSPCTG00005009637) #15	ENSPCTG00005009585	ENSPCTG00005009530	ENSPCTG00005009487 #16	ENSPCTG00005009442 ##18	CST11 (ENSPCTG00005009381)	CSTL1 (ENSPCTG00005009306)	ENSPCTG00005009273 #19	ENSPCTG00005009228 #13	CST7 (ENSPCTG00005009166) #12	APMAP (ENSPCTG00005009088) #11	ENSPCTG00005009058 #10	VSX1 (ENSPCTG00005008966) #9	ENTPD6 (ENSPCTG00005008559) #8	ABHD12 (ENSPCTG00005008481)
Blue whale	MODERN SPECIES	6	CST7 (ENSBMSG00010012340) #12	SYNDIG1 (ENSBMSG00010012350) #13	CST3 (ENSBMSG00010012360) #15	ENSBMSG00010012375	ENSBMSG00010012390	ENSBMSG00010012402 #16	CST8 (ENSBMSG00010012422) #17	ENSBMSG00010012475	ENSBMSG00010012491 ##18	CST11 (ENSBMSG00010012502)	CSTL1 (ENSBMSG00010012521)	NAPB (ENSBMSG00010012544) #19	ENSBMSG00010012568 #20	ENSBMSG00010012580 #20	NXT1 (ENSBMSG00010012589) #21	CD93 (ENSBMSG00010012595) #22	THBD (ENSBMSG00010012612)	SSTR4 (ENSBMSG00010013828) #23	FOXA2 (ENSBMSG00010013859) #24	PAX1 (ENSBMSG00010013891) #25	NKX2-2 (ENSBMSG00010013921) #26	NKX2-4 (ENSBMSG00010013938) #27	XRN2 (ENSBMSG00010014058) #28	KIZ (ENSBMSG00010014281)	RALGAPA2 (ENSBMSG00010014396) #30	INSM1 (ENSBMSG00010014572) #31	CFAP61 (ENSBMSG00010014638) #34	CRNKL1 (ENSBMSG00010014711) #35	NAA20 (ENSBMSG00010014762) #36	RIN2 (ENSBMSG00010014833) #37	SLC24A3 (ENSBMSG00010014883)
Pecora	ANCESTRAL SPECIES	9	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Yarkand deer	MODERN SPECIES	15	ENSCHYG00000024206 #12	APMAP (ENSCHYG00000024095) #11	SYNDIG1 (ENSCHYG00000024042) #13	CST3 (ENSCHYG00000024014) #15	ENSCHYG00000023998	ENSCHYG00000023958	ENSCHYG00000023931 #16	ENSCHYG00000023900 #17	ENSCHYG00000023874	ENSCHYG00000023860 ##18	ENSCHYG00000023824	ENSCHYG00000023804	NAPB (ENSCHYG00000023659) #19	GZF1 (ENSCHYG00000023598) #20	NXT1 (ENSCHYG00000023576) #21	CD93 (ENSCHYG00000023556) #22	THBD (ENSCHYG00000023542)	ENSCHYG00000023501	ENSCHYG00000023462	FOXA2 (ENSCHYG00000023420) #24	PAX1 (ENSCHYG00000023364) #25	ENSCHYG00000023344	NKX2-2 (ENSCHYG00000023304) #26	NKX2-4 (ENSCHYG00000023282) #27	XRN2 (ENSCHYG00000022819) #28	ENSCHYG00000022761	ENSCHYG00000022734	KIZ (ENSCHYG00000022176)	RALGAPA2 (ENSCHYG00000021147) #30	INSM1 (ENSCHYG00000021030) #31	CFAP61 (ENSCHYG00000020914) #34
Percora_a	ANCESTRAL SPECIES	10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Siberian musk deer	MODERN SPECIES	1194	ACSS1 (ENSMMSG00000018444) #10	APMAP (ENSMMSG00000018481) #11	CST7 (ENSMMSG00000018529) #12	SYNDIG1 (ENSMMSG00000018548) #13	CST3 (ENSMMSG00000018564) #15	ENSMMSG00000018584	ENSMMSG00000018603 #16	CST8 (ENSMMSG00000018626) #17	ENSMMSG00000018653	ENSMMSG00000018676 ##18	ENSMMSG00000018712	CSTL1 (ENSMMSG00000018731)	NAPB (ENSMMSG00000018763) #19	GZF1 (ENSMMSG00000018836) #20	NXT1 (ENSMMSG00000018866) #21	CD93 (ENSMMSG00000018871) #22	THBD (ENSMMSG00000018897)	FOXA2 (ENSMMSG00000018910) #24	PAX1 (ENSMMSG00000018943) #25	NKX2-2 (ENSMMSG00000018973) #26	ENSMMSG00000018994	ENSMMSG00000019016	NKX2-4 (ENSMMSG00000019032) #27	XRN2 (ENSMMSG00000019064) #28	KIZ (ENSMMSG00000019151)	RALGAPA2 (ENSMMSG00000019313) #30	INSM1 (ENSMMSG00000019511) #31	ENSMMSG00000019522 #32	ENSMMSG00000019535 #34	ENSMMSG00000019564 #34	CRNKL1 (ENSMMSG00000019594) #35
Bovidae	ANCESTRAL SPECIES	10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000161877.i	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00950000183014.f.a.h.u.a.a.b.a	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155114.wb.b	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT00390000001138.a.g
Rambouillet Sheep	MODERN SPECIES	4	SYNDIG1 (ENSOARG00020005336) #13	CST3 (ENSOARG00020005311) #15	ENSOARG00020005305	ENSOARG00020005290	ENSOARG00020005269	ENSOARG00020005253 #16	ENSOARG00020005233 #17	ENSOARG00020005223	ENSOARG00020005206 ##18	ENSOARG00020005178	CSTL1 (ENSOARG00020005157)	NAPB (ENSOARG00020004860) #19	GZF1 (ENSOARG00020004766) #20	NXT1 (ENSOARG00020004744) #21	ENSOARG00020004719	CD93 (ENSOARG00020004706) #22	ENSOARG00020004667	FOXA2 (ENSOARG00020004643) #24	ENSOARG00020004631	PAX1 (ENSOARG00020004579) #25	NKX2-2 (ENSOARG00020004554) #26	NKX2-4 (ENSOARG00020004533) #27	XRN2 (ENSOARG00020004498) #28	KIZ (ENSOARG00020004321)	RALGAPA2 (ENSOARG00020003837) #30	INSM1 (ENSOARG00020003800) #31	CFAP61 (ENSOARG00020003632) #34	CRNKL1 (ENSOARG00020003543) #35	NAA20 (ENSOARG00020003499) #36	RIN2 (ENSOARG00020003240) #37	ENSOARG00020023127
Goat	MODERN SPECIES	4	ACSS1 (ENSCHIG00000021744) #10	APMAP (ENSCHIG00000013115) #11	CST7 (ENSCHIG00000021898) #12	SYNDIG1 (ENSCHIG00000020378) #13	CST3 (ENSCHIG00000009090) #15	ENSCHIG00000022173	ENSCHIG00000009930	ENSCHIG00000021829 #16	ENSCHIG00000025947 #17	ENSCHIG00000017766	ENSCHIG00000003642 ##18	ENSCHIG00000021813	NAPB (ENSCHIG00000020249) #19	GZF1 (ENSCHIG00000008882) #20	ENSCHIG00000021979	CD93 (ENSCHIG00000009092) #22	THBD (ENSCHIG00000010975)	ENSCHIG00000022438	FOXA2 (ENSCHIG00000013879) #24	PAX1 (ENSCHIG00000025250) #25	NKX2-2 (ENSCHIG00000025252) #26	NKX2-4 (ENSCHIG00000017092) #27	ENSCHIG00000009213	XRN2 (ENSCHIG00000006921) #28	KIZ (ENSCHIG00000020496)	ENSCHIG00000001410	ENSCHIG00000005268	RALGAPA2 (ENSCHIG00000023081) #30	INSM1 (ENSCHIG00000002944) #31	CFAP61 (ENSCHIG00000022048) #34	CRNKL1 (ENSCHIG00000013171) #35
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT00390000001138.a.g.b
Bos	ANCESTRAL SPECIES	22	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554.jb #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137.d #25	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B.d #37	ENSGT00390000001138.a.g.b
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554.jb #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137.d #25	ENSGT00940000153362.a.cb.b.a.a	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B.d #37	ENSGT00960000190537
Wild yak	MODERN SPECIES	194																CD93 (ENSBMUG00000003082) #22	ENSBMUG00000003102	FOXA2 (ENSBMUG00000003127) #24	PAX1 (ENSBMUG00000003140) #25	ENSBMUG00000003171	NKX2-2 (ENSBMUG00000003181) #26	XRN2 (ENSBMUG00000003295) #28	KIZ (ENSBMUG00000003411)	RALGAPA2 (ENSBMUG00000003599) #30	CFAP61 (ENSBMUG00000003762) #34	CRNKL1 (ENSBMUG00000003809) #35	NAA20 (ENSBMUG00000003835) #36	RIN2 (ENSBMUG00000003883) #37	ENSBMUG00000003910	SLC24A3 (ENSBMUG00000003930)	SCP2D1 (ENSBMUG00000003945)
Domestic yak	MODERN SPECIES	3	CST7 (ENSBGRG00000008014) #12	SYNDIG1 (ENSBGRG00000007905) #13	CST3 (ENSBGRG00000007838) #15	ENSBGRG00000007806	ENSBGRG00000007774 #16	CST8 (ENSBGRG00000007704) #17	ENSBGRG00000007655	ENSBGRG00000007612 ##18	ENSBGRG00000007520	CSTL1 (ENSBGRG00000007456)	NAPB (ENSBGRG00000007201) #19	ENSBGRG00000007150 #20	ENSBGRG00000007097 #20	NXT1 (ENSBGRG00000007076) #21	ENSBGRG00000007043	CD93 (ENSBGRG00000006986) #22	THBD (ENSBGRG00000006963)	FOXA2 (ENSBGRG00000006927) #24	PAX1 (ENSBGRG00000006855) #25	ENSBGRG00000006824 #25	ENSBGRG00000006808	NKX2-2 (ENSBGRG00000006790) #26	NKX2-4 (ENSBGRG00000006760) #27	XRN2 (ENSBGRG00000006633) #28	KIZ (ENSBGRG00000006486)	ENSBGRG00000006333 #30	ENSBGRG00000006247 #30	INSM1 (ENSBGRG00000006219) #31	CFAP61 (ENSBGRG00000006111) #34	CRNKL1 (ENSBGRG00000006006) #35	NAA20 (ENSBGRG00000005893) #36
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877.j	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554.jb #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137.d #25	ENSGT00940000153362.a.bb.b.a	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B.d #37	ENSGT00390000001138.a.g.b
Hybrid Bos Indicus	MODERN SPECIES	4	ACSS1 (ENSBIXG00005011033) #10	APMAP (ENSBIXG00005010989) #11	CST7 (ENSBIXG00005000982) #12	SYNDIG1 (ENSBIXG00005010911) #13	ENSBIXG00005010878 #15	ENSBIXG00005010849	ENSBIXG00005000954 #16	CST8 (ENSBIXG00005006779) #17	ENSBIXG00005010816	ENSBIXG00005000950 ##18	ENSBIXG00005010800	ENSBIXG00005000943	NAPB (ENSBIXG00005000942) #19	GZF1 (ENSBIXG00005010698) #20	NXT1 (ENSBIXG00005010690) #21	CD93 (ENSBIXG00005010666) #22	ENSBIXG00005000916	THBD (ENSBIXG00005010640)	FOXA2 (ENSBIXG00005000913) #24	PAX1 (ENSBIXG00005010606) #25	ENSBIXG00005000694	ENSBIXG00005000714 #27	XRN2 (ENSBIXG00005006105) #28	ENSBIXG00005010385	RALGAPA2 (ENSBIXG00005010322) #30	INSM1 (ENSBIXG00005010299) #31	CFAP61 (ENSBIXG00005010280) #34	CRNKL1 (ENSBIXG00005010247) #35	NAA20 (ENSBIXG00005010224) #36	RIN2 (ENSBIXG00005010179) #37	ENSBIXG00005010143
Cow	MODERN SPECIES	4	ENTPD6 (ENSBTAG00000009881) #8	VSX1 (ENSBTAG00000003335) #9	ACSS1 (ENSBTAG00000004281) #10	APMAP (ENSBTAG00000004278) #11	CST7 (ENSBTAG00000004273) #12	SYNDIG1 (ENSBTAG00000040147) #13	CST3 (ENSBTAG00000000598) #15	ENSBTAG00000032687	ENSBTAG00000015949 #16	CST8 (ENSBTAG00000032694) #17	MGC133636 (ENSBTAG00000013416) ##18	ENSBTAG00000027420	NAPB (ENSBTAG00000032704) #19	GZF1 (ENSBTAG00000008908) #20	NXT1 (ENSBTAG00000004993) #21	CD93 (ENSBTAG00000004207) #22	THBD (ENSBTAG00000048591)	FOXA2 (ENSBTAG00000012407) #24	PAX1 (ENSBTAG00000006742) #25	ENSBTAG00000035643	NKX2-2 (ENSBTAG00000010277) #26	NKX2-4 (ENSBTAG00000011312) #27	XRN2 (ENSBTAG00000011304) #28	KIZ (ENSBTAG00000020988)	RALGAPA2 (ENSBTAG00000014178) #30	CFAP61 (ENSBTAG00000009291) #34	CRNKL1 (ENSBTAG00000008472) #35	NAA20 (ENSBTAG00000001144) #36	RIN2 (ENSBTAG00000020382) #37	ENSBTAG00000032893	SLC24A3 (ENSBTAG00000011882)
American bison	MODERN SPECIES	2997	ENSBBBG00000022411	ACSS1 (ENSBBBG00000022438) #10	APMAP (ENSBBBG00000005932) #11	ENSBBBG00000022484 #12	SYNDIG1 (ENSBBBG00000022490) #13	CST3 (ENSBBBG00000005938) #15	ENSBBBG00000022502	ENSBBBG00000022506 #16	CST8 (ENSBBBG00000022516) #17	ENSBBBG00000005942	ENSBBBG00000022528 ##18	ENSBBBG00000022535	CSTL1 (ENSBBBG00000022543)	NAPB (ENSBBBG00000022632) #19	GZF1 (ENSBBBG00000022655) #20	CD93 (ENSBBBG00000005967) #22	THBD (ENSBBBG00000022684)	FOXA2 (ENSBBBG00000022700) #24	PAX1 (ENSBBBG00000022763) #25	ENSBBBG00000022780	ENSBBBG00000022786 #26	XRN2 (ENSBBBG00000022814) #28	KIZ (ENSBBBG00000022908)	RALGAPA2 (ENSBBBG00000022984) #30	ENSBBBG00000022996 #31	CFAP61 (ENSBBBG00000006046) #34	CRNKL1 (ENSBBBG00000008793) #35	NAA20 (ENSBBBG00000023097) #36	RIN2 (ENSBBBG00000023140) #37	ENSBBBG00000023147	SLC24A3 (ENSBBBG00000000461)
Camelidae	ANCESTRAL SPECIES	49	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000166261	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b	ENSGT00940000153431.b	ENSGT00860000134050
Arabian camel	MODERN SPECIES	10	CST7 (ENSCDRG00005019480) #12	SYNDIG1 (ENSCDRG00005019502) #13	CST3 (ENSCDRG00005019511) #15	ENSCDRG00005019523	ENSCDRG00005019533	ENSCDRG00005019539	ENSCDRG00005019553 #16	CST8 (ENSCDRG00005019565) #17	ENSCDRG00005019579	ENSCDRG00005019599 ##18	ENSCDRG00005019617	CSTL1 (ENSCDRG00005019624)	ENSCDRG00005019640 #19	GZF1 (ENSCDRG00005019674) #20	ENSCDRG00005019685 #21	CD93 (ENSCDRG00005019688) #22	ENSCDRG00005019694	FOXA2 (ENSCDRG00005019700) #24	PAX1 (ENSCDRG00005019717) #25	NKX2-2 (ENSCDRG00005019726) #26	XRN2 (ENSCDRG00005019738) #28	KIZ (ENSCDRG00005019794)	ENSCDRG00005020052 #30	ENSCDRG00005020129 #30	CFAP61 (ENSCDRG00005020211) #34	CRNKL1 (ENSCDRG00005020237) #35	NAA20 (ENSCDRG00005020249) #36	RIN2 (ENSCDRG00005020269) #37	SLC24A3 (ENSCDRG00005020283)	SCP2D1 (ENSCDRG00005020314)	DTD1 (ENSCDRG00005003474)
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Carnivora	ANCESTRAL SPECIES	20	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410	ENSGT00940000154755.e.a #15	ENSGT00940000161877.n	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Caniformia	ANCESTRAL SPECIES		ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.e.a #15	ENSGT00940000161877.n	ENSGT00940000161877.m	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.e.a #15	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000161877.m.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Ursidae	ANCESTRAL SPECIES	14			ENSGT00940000154755.e.a #15	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000161877.m.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Ursus	ANCESTRAL SPECIES	191			ENSGT00940000154755.e.a #15	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000161877.m.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121
American black bear	MODERN SPECIES	4688																CD93 (ENSUAMG00000002525) #22	THBD (ENSUAMG00000002521)	SSTR4 (ENSUAMG00000002519) #23
Polar bear	MODERN SPECIES	300			ENSUMAG00000004197 #15	ENSUMAG00000004190	ENSUMAG00000004185	ENSUMAG00000004168	ENSUMAG00000004162 #16	CST8 (ENSUMAG00000004155) #17	ENSUMAG00000004147	ENSUMAG00000004140 ##18	CST11 (ENSUMAG00000004135)	CSTL1 (ENSUMAG00000004128)	NAPB (ENSUMAG00000004081) #19	GZF1 (ENSUMAG00000004065) #20	NXT1 (ENSUMAG00000004062) #21	CD93 (ENSUMAG00000004052) #22	SSTR4 (ENSUMAG00000004048) #23	PAX1 (ENSUMAG00000004035) #25	ENSUMAG00000004026 #26	XRN2 (ENSUMAG00000004012) #28	KIZ (ENSUMAG00000003912)	ENSUMAG00000003879 #30
Giant Panda	MODERN SPECIES	4						ENSAMEG00000030212	ENSAMEG00000009914 #16	CST8 (ENSAMEG00000009906) #17	ENSAMEG00000009904	CST11 (ENSAMEG00000009897)	CSTL1 (ENSAMEG00000026681)	NAPB (ENSAMEG00000009863) #19	GZF1 (ENSAMEG00000009853) #20	NXT1 (ENSAMEG00000018729) #21	ENSAMEG00000024065	CD93 (ENSAMEG00000009849) #22	THBD (ENSAMEG00000019083)	SSTR4 (ENSAMEG00000019048) #23	FOXA2 (ENSAMEG00000015802) #24	ENSAMEG00000031412	PAX1 (ENSAMEG00000012642) #25	NKX2-2 (ENSAMEG00000029802) #26	NKX2-4 (ENSAMEG00000030670) #27	XRN2 (ENSAMEG00000012581) #28	KIZ (ENSAMEG00000012566)	RALGAPA2 (ENSAMEG00000000299) #30	CFAP61 (ENSAMEG00000000288) #34	CRNKL1 (ENSAMEG00000000270) #35	NAA20 (ENSAMEG00000000262) #36	RIN2 (ENSAMEG00000000240) #37	SLC24A3 (ENSAMEG00000000234)
Mustelinae	ANCESTRAL SPECIES	43	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755.e.a #15	ENSGT00940000161877.m.a	ENSGT00940000161877.n	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00940000167996 #32	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Ferret	MODERN SPECIES	204	ACSS1 (ENSMPUG00000001109) #10	APMAP (ENSMPUG00000001112) #11	CST7 (ENSMPUG00000001114) #12	SYNDIG1 (ENSMPUG00000001115) #13	ENSMPUG00000001119	CST3 (ENSMPUG00000001122) #15	ENSMPUG00000001137	ENSMPUG00000001138	ENSMPUG00000001140	CST8 (ENSMPUG00000001143) #17	ENSMPUG00000001151	CST11 (ENSMPUG00000001154)	NAPB (ENSMPUG00000001158) #19	GZF1 (ENSMPUG00000001160) #20	NXT1 (ENSMPUG00000019260) #21	CD93 (ENSMPUG00000001163) #22	THBD (ENSMPUG00000019265)	SSTR4 (ENSMPUG00000019271) #23	FOXA2 (ENSMPUG00000001166) #24	ENSMPUG00000001167	PAX1 (ENSMPUG00000001187) #25	NKX2-2 (ENSMPUG00000001196) #26	XRN2 (ENSMPUG00000001198) #28	KIZ (ENSMPUG00000001201)	ENSMPUG00000019274	ENSMPUG00000001204	RALGAPA2 (ENSMPUG00000001210) #30	INSM1 (ENSMPUG00000001216) #31	CFAP61 (ENSMPUG00000001219) #34	CRNKL1 (ENSMPUG00000001226) #35	NAA20 (ENSMPUG00000001228) #36
American mink	MODERN SPECIES	503													CSTL1 (ENSNVIG00000020955)	NAPB (ENSNVIG00000020894) #19	GZF1 (ENSNVIG00000020871) #20	CD93 (ENSNVIG00000020862) #22	THBD (ENSNVIG00000020858)	SSTR4 (ENSNVIG00000020855) #23
Canidae	ANCESTRAL SPECIES	19							ENSGT00940000157363.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046.j.a #36	ENSGT00940000161804.d.a	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Canis_lupus	ANCESTRAL SPECIES	13							ENSGT00940000157363.b	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT01100000263605.j	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046.j.a #36	ENSGT00940000161804.d.a	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Dingo	MODERN SPECIES	343							ENSCAFG00020027456 #16	CST8 (ENSCAFG00020027457) #17	ENSCAFG00020027458	CST11 (ENSCAFG00020027459)	CSTL1 (ENSCAFG00020027460)	ENSCAFG00020027461 #19	ENSCAFG00020027463 #20	ENSCAFG00020027464 #20	ENSCAFG00020027465 #21	CD93 (ENSCAFG00020027467) #22	THBD (ENSCAFG00020027468)	ENSCAFG00020027470	ENSCAFG00020027471	FOXA2 (ENSCAFG00020027472) #24	PAX1 (ENSCAFG00020027475) #25	NKX2-2 (ENSCAFG00020027477) #26	NKX2-4 (ENSCAFG00020027478) #27	XRN2 (ENSCAFG00020027479) #28	KIZ (ENSCAFG00020027480)	RALGAPA2 (ENSCAFG00020027484) #30	CFAP61 (ENSCAFG00020027486) #34	ENSCAFG00020027487	CRNKL1 (ENSCAFG00020027488) #35	ENSCAFG00020027489 #36	ENSCAFG00020027490
Dog	MODERN SPECIES	16							HUS1 (ENSCAFG00845026030)	ENSCAFG00845026576	ENSCAFG00845026609 #16	CST8 (ENSCAFG00845026649) #17	ENSCAFG00845026671	CST11 (ENSCAFG00845026760)	CSTL1 (ENSCAFG00845026794)	NAPB (ENSCAFG00845026852) #19	GZF1 (ENSCAFG00845027001) #20	CD93 (ENSCAFG00845027134) #22	THBD (ENSCAFG00845027195)	ENSCAFG00845027219	ENSCAFG00845027242	FOXA2 (ENSCAFG00845027259) #24	PAX1 (ENSCAFG00845027290) #25	NKX2-2 (ENSCAFG00845027437) #26	NKX2-4 (ENSCAFG00845027483) #27	XRN2 (ENSCAFG00845027569) #28	KIZ (ENSCAFG00845028046)	RALGAPA2 (ENSCAFG00845028444) #30	CFAP61 (ENSCAFG00845028852) #34	ENSCAFG00845028933	CRNKL1 (ENSCAFG00845028961) #35	NAA20 (ENSCAFG00845029048) #36	ENSCAFG00845029111
Red fox	MODERN SPECIES	506																CD93 (ENSVVUG00000003201) #22
Felidae	ANCESTRAL SPECIES	3	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000163410.k	ENSGT00940000154755.e.a #15	ENSGT00940000161877.n	ENSGT00940000163249 #16	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Panthera	ANCESTRAL SPECIES	2	ENSGT00950000183147.B #13	ENSGT00940000154755.e.b #15	ENSGT00940000163410.k	ENSGT00940000154755.e.a #15	ENSGT00940000161877.n	ENSGT00940000163249 #16	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #13	ENSGT00940000154755.e.b #15	ENSGT00940000163410.k	ENSGT00940000154755.e.a #15	ENSGT00940000161877.n	ENSGT00940000163249 #16	ENSGT00950000182865.b.a.b.b.a.b	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046.k #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
leopard	MODERN SPECIES	39			SYNDIG1 (ENSPPRG00000024465) #13	ENSPPRG00000024520 #15	ENSPPRG00000016720 #15	ENSPPRG00000015946 #16	ENSPPRG00000015501	CST8 (ENSPPRG00000015009) #17	ENSPPRG00000014635	ENSPPRG00000013202 ##18	CST11 (ENSPPRG00000011764)	ENSPPRG00000011394	NAPB (ENSPPRG00000010805) #19	GZF1 (ENSPPRG00000010040) #20	NXT1 (ENSPPRG00000021392) #21	CD93 (ENSPPRG00000009570) #22	THBD (ENSPPRG00000021378)	SSTR4 (ENSPPRG00000021367) #23	FOXA2 (ENSPPRG00000009206) #24	PAX1 (ENSPPRG00000009070) #25	NKX2-2 (ENSPPRG00000008916) #26	NKX2-4 (ENSPPRG00000008761) #27	XRN2 (ENSPPRG00000008732) #28	KIZ (ENSPPRG00000007745)	RALGAPA2 (ENSPPRG00000006401) #30	INSM1 (ENSPPRG00000021271) #31	CFAP61 (ENSPPRG00000004321) #34	CRNKL1 (ENSPPRG00000001955) #35	ENSPPRG00000001197 #36	ENSPPRG00000000577 #37	SLC24A3 (ENSPPRG00000022720)
lion	MODERN SPECIES	3	CST7 (ENSPLOG00000000513) #12	ENSPLOG00000000534	SYNDIG1 (ENSPLOG00000000543) #13	ENSPLOG00000000559	CST3 (ENSPLOG00000000650) #15	CST9L (ENSPLOG00000000670)	ENSPLOG00000000686 #16	CST8 (ENSPLOG00000000695) #17	ENSPLOG00000000715	ENSPLOG00000000735 ##18	CST11 (ENSPLOG00000000758)	CSTL1 (ENSPLOG00000000776)	NAPB (ENSPLOG00000000809) #19	GZF1 (ENSPLOG00000000839) #20	NXT1 (ENSPLOG00000000844) #21	CD93 (ENSPLOG00000000855) #22	THBD (ENSPLOG00000000869)	SSTR4 (ENSPLOG00000000946) #23	FOXA2 (ENSPLOG00000000959) #24	PAX1 (ENSPLOG00000000971) #25	NKX2-2 (ENSPLOG00000000985) #26	NKX2-4 (ENSPLOG00000001002) #27	XRN2 (ENSPLOG00000001042) #28	KIZ (ENSPLOG00000001155)	RALGAPA2 (ENSPLOG00000001266) #30	INSM1 (ENSPLOG00000001312) #31	CFAP61 (ENSPLOG00000001356) #34	CRNKL1 (ENSPLOG00000001416) #35	NAA20 (ENSPLOG00000001447) #36	RIN2 (ENSPLOG00000001490) #37	SLC24A3 (ENSPLOG00000001538)
Tiger	MODERN SPECIES	535	APMAP (ENSPTIG00000009330) #11	CST7 (ENSPTIG00000009188) #12	SYNDIG1 (ENSPTIG00000008709) #13	ENSPTIG00000007645	ENSPTIG00000007325	CST9L (ENSPTIG00000007266)	ENSPTIG00000007155 #16	CST8 (ENSPTIG00000006377) #17	ENSPTIG00000005641	ENSPTIG00000005550 ##18	CST11 (ENSPTIG00000003091)	ENSPTIG00000001355	NAPB (ENSPTIG00000019947) #19	GZF1 (ENSPTIG00000019328) #20	NXT1 (ENSPTIG00000003788) #21	CD93 (ENSPTIG00000018580) #22	SSTR4 (ENSPTIG00000003769) #23	PAX1 (ENSPTIG00000017141) #25	NKX2-2 (ENSPTIG00000016807) #26	XRN2 (ENSPTIG00000015683) #28	KIZ (ENSPTIG00000015123)	RALGAPA2 (ENSPTIG00000012682) #30	CFAP61 (ENSPTIG00000009217) #34	CRNKL1 (ENSPTIG00000007393) #35	NAA20 (ENSPTIG00000006328) #36	RIN2 (ENSPTIG00000003100) #37	SLC24A3 (ENSPTIG00000021465)	SCP2D1 (ENSPTIG00000002789)	DTD1 (ENSPTIG00000020971)	SEC23B (ENSPTIG00000020593)	RBBP9 (ENSPTIG00000020464)
Cat	MODERN SPECIES	2	CST7 (ENSFCAG00000014543) #12	SYNDIG1 (ENSFCAG00000033652) #13	ENSFCAG00000035754	CST3 (ENSFCAG00000038525) #15	ENSFCAG00000030881	ENSFCAG00000027887 #16	ENSFCAG00000023071	CST8 (ENSFCAG00000023255) #17	ENSFCAG00000042989	ENSFCAG00000026179 ##18	CST11 (ENSFCAG00000003949)	CSTL1 (ENSFCAG00000041684)	NAPB (ENSFCAG00000037279) #19	GZF1 (ENSFCAG00000006484) #20	NXT1 (ENSFCAG00000006482) #21	CD93 (ENSFCAG00000025238) #22	THBD (ENSFCAG00000011513)	SSTR4 (ENSFCAG00000022777) #23	FOXA2 (ENSFCAG00000012368) #24	PAX1 (ENSFCAG00000004293) #25	NKX2-2 (ENSFCAG00000008740) #26	NKX2-4 (ENSFCAG00000045261) #27	XRN2 (ENSFCAG00000007970) #28	KIZ (ENSFCAG00000007966)	RALGAPA2 (ENSFCAG00000028385) #30	INSM1 (ENSFCAG00000040680) #31	CFAP61 (ENSFCAG00000000715) #34	CRNKL1 (ENSFCAG00000000714) #35	NAA20 (ENSFCAG00000028113) #36	RIN2 (ENSFCAG00000014527) #37	SLC24A3 (ENSFCAG00000008015)
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b
Equus	ANCESTRAL SPECIES	8	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00940000162636.B ##18	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000156819.a.a #23	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00510000047812.l	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37
Horse	MODERN SPECIES	14	ACSS1 (ENSECAG00000023870) #10	APMAP (ENSECAG00000014524) #11	CST7 (ENSECAG00000000268) #12	ENSECAG00000050617	SYNDIG1 (ENSECAG00000006421) #13	CST3 (ENSECAG00000038893) #15	ENSECAG00000045045 #16	CST9L (ENSECAG00000010654)	CST8 (ENSECAG00000029932) #17	ENSECAG00000014988 ##18	CST11 (ENSECAG00000016342)	CSTL1 (ENSECAG00000019672)	NAPB (ENSECAG00000022016) #19	GZF1 (ENSECAG00000011343) #20	NXT1 (ENSECAG00000035032) #21	CD93 (ENSECAG00000016324) #22	THBD (ENSECAG00000005241)	FOXA2 (ENSECAG00000032004) #24	PAX1 (ENSECAG00000016945) #25	NKX2-2 (ENSECAG00000018977) #26	NKX2-4 (ENSECAG00000037105) #27	XRN2 (ENSECAG00000018988) #28	KIZ (ENSECAG00000016626)	ENSECAG00000036437	RALGAPA2 (ENSECAG00000019950) #30	INSM1 (ENSECAG00000037552) #31	CFAP61 (ENSECAG00000004364) #34	CRNKL1 (ENSECAG00000022215) #35	NAA20 (ENSECAG00000012609) #36	RIN2 (ENSECAG00000015381) #37	SLC24A3 (ENSECAG00000019334)
Donkey	MODERN SPECIES	6	ENSEASG00005030814 #9	ACSS1 (ENSEASG00005002623) #10	APMAP (ENSEASG00005002617) #11	CST7 (ENSEASG00005029197) #12	ENSEASG00005002614 #13	ENSEASG00005002598 #15	ENSEASG00005027176	ENSEASG00005025391 #16	CST8 (ENSEASG00005030555) #17	ENSEASG00005031840	CST11 (ENSEASG00005002576)	CSTL1 (ENSEASG00005002572)	NAPB (ENSEASG00005002564) #19	GZF1 (ENSEASG00005002557) #20	NXT1 (ENSEASG00005033641) #21	CD93 (ENSEASG00005002547) #22	THBD (ENSEASG00005027531)	SSTR4 (ENSEASG00005002540) #23	FOXA2 (ENSEASG00005002535) #24	PAX1 (ENSEASG00005002521) #25	NKX2-2 (ENSEASG00005038540) #26	NKX2-4 (ENSEASG00005002501) #27	XRN2 (ENSEASG00005002484) #28	KIZ (ENSEASG00005002467)	ENSEASG00005002454	RALGAPA2 (ENSEASG00005002224) #30	INSM1 (ENSEASG00005002118) #31	CFAP61 (ENSEASG00005002079) #34	CRNKL1 (ENSEASG00005002072) #35	NAA20 (ENSEASG00005002069) #36	RIN2 (ENSEASG00005002067) #37
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00940000160793 #9	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000160793 #9	ENSGT00940000158550 #10	ENSGT00440000039984.a #11	ENSGT00940000160277 #12	ENSGT00950000183147.B #13	ENSGT00940000154755 #15	ENSGT00940000161877	ENSGT00940000163249 #16	ENSGT00940000162294 #17	ENSGT00940000165454	ENSGT00910000144356	ENSGT00900000141212	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276	ENSGT00940000155999 #24	ENSGT00940000159137 #25	ENSGT00940000159727 #26	ENSGT00940000162247 #27	ENSGT00670000098098 #28	ENSGT00390000010121	ENSGT00950000183139.A #30	ENSGT00940000162552 #31	ENSGT00390000004987 #34	ENSGT00550000074931 #35	ENSGT00550000075046 #36	ENSGT00940000154866.B #37	ENSGT01030000234532.A.a.a.b	ENSGT00940000154327.b.e.b
Greater horseshoe bat	MODERN SPECIES	15	ENTPD6 (ENSRFEG00010011594) #8	ENSRFEG00010011488 #7	ABHD12 (ENSRFEG00010011429)	GINS1 (ENSRFEG00010011337)	NINL (ENSRFEG00010011279)	NANP (ENSRFEG00010011232)	CST3 (ENSRFEG00010011121) #15	CST9L (ENSRFEG00010011055)	ENSRFEG00010011001 #16	ENSRFEG00010010952	CST11 (ENSRFEG00010010901)	CSTL1 (ENSRFEG00010010843)	NAPB (ENSRFEG00010010719) #19	GZF1 (ENSRFEG00010010618) #20	NXT1 (ENSRFEG00010010600) #21	CD93 (ENSRFEG00010010553) #22	THBD (ENSRFEG00010010533)	ENSRFEG00010010499	ENSRFEG00010010431	FOXA2 (ENSRFEG00010010354) #24	ENSRFEG00010010271	PAX1 (ENSRFEG00010010205) #25	NKX2-2 (ENSRFEG00010010185) #26	NKX2-4 (ENSRFEG00010010146) #27	XRN2 (ENSRFEG00010010058) #28	ENSRFEG00010010021	KIZ (ENSRFEG00010009832)	ENSRFEG00010009788	RALGAPA2 (ENSRFEG00010009655) #30	INSM1 (ENSRFEG00010009617) #31	CFAP61 (ENSRFEG00010009533) #34
Microbat	MODERN SPECIES	1151	CST7 (ENSMLUG00000004912) #12	SYNDIG1 (ENSMLUG00000012716) #13	ENSMLUG00000011668	ENSMLUG00000026533	ENSMLUG00000010298	CST3 (ENSMLUG00000028312) #15	ENSMLUG00000007975	ENSMLUG00000024267 #16	CST8 (ENSMLUG00000002227) #17	ENSMLUG00000028493	CST11 (ENSMLUG00000002218)	CSTL1 (ENSMLUG00000002210)	NAPB (ENSMLUG00000002203) #19	GZF1 (ENSMLUG00000002194) #20	NXT1 (ENSMLUG00000006881) #21	CD93 (ENSMLUG00000011185) #22	THBD (ENSMLUG00000011192)	FOXA2 (ENSMLUG00000025149) #24
Megabat	MODERN SPECIES	6108																CD93 (ENSPVAG00000003132) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156996 #22
Common shrew	MODERN SPECIES	8163																CD93 (ENSSARG00000002968) #22