Murinae	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980 #8	ENSGT00940000154755.c.b.a #10	ENSGT00940000154755.c.a #11	ENSGT00940000161877.c.a #12	ENSGT00940000161877.c.b ##12	ENSGT00940000163249 #13	ENSGT00940000162294 #14	ENSGT00940000162636.A #15	ENSGT00940000162636.B #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #25	ENSGT00940000159137 #26	ENSGT00940000159727 #27	ENSGT00940000162247 #28	ENSGT00670000098098 #29	ENSGT00390000010121 #30	ENSGT00950000183139.A #31	ENSGT00940000162552 #32	ENSGT00390000004987 #33	ENSGT00550000074931 #34	ENSGT00550000075046 #35	ENSGT00940000154866.B #36	ENSGT01030000234532.A.a.a.b #37
Mus	ANCESTRAL SPECIES	1	ENSGT00950000183147.B #9	ENSGT00860000135980 #8	ENSGT00940000154755.c.b.a #10	ENSGT00940000154755.c.a #11	ENSGT00940000161877.c.a #12	ENSGT00940000161877.c.b ##12	ENSGT00940000163249 #13	ENSGT00940000162294 #14	ENSGT00940000162636.A #15	ENSGT00940000162636.B #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #25	ENSGT00940000159137 #26	ENSGT00940000159727 #27	ENSGT00940000162247 #28	ENSGT00670000098098 #29	ENSGT00390000010121 #30	ENSGT00950000183139.A #31	ENSGT00940000162552 #32	ENSGT00390000004987 #33	ENSGT00550000074931 #34	ENSGT00550000075046 #35	ENSGT00940000154866.B #36	ENSGT01030000234532.A.a.a.b #37
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025865 #7	MGP_PahariEiJ_G0025864 #8	Syndig1 (MGP_PahariEiJ_G0025863) #9	Cst10 (MGP_PahariEiJ_G0025862) #10	Cst3 (MGP_PahariEiJ_G0025861) #11	Cstdc2 (MGP_PahariEiJ_G0025860) #12	Cst13 (MGP_PahariEiJ_G0025859) #13	Cst8 (MGP_PahariEiJ_G0025858) #14	Cst12 (MGP_PahariEiJ_G0025857) #15	Cstdc1 (MGP_PahariEiJ_G0025856) #16	Cst11 (MGP_PahariEiJ_G0025855) #17	Cstl1 (MGP_PahariEiJ_G0025854) #18	Napb (MGP_PahariEiJ_G0025853) #19	Gzf1 (MGP_PahariEiJ_G0025852) #20	Nxt1 (MGP_PahariEiJ_G0025851) #21	Cd93 (MGP_PahariEiJ_G0025850) #22	Thbd (MGP_PahariEiJ_G0025849) #23	Sstr4 (MGP_PahariEiJ_G0025848) #24	Foxa2 (MGP_PahariEiJ_G0025847) #25	Pax1 (MGP_PahariEiJ_G0025846) #26	Nkx2-2 (MGP_PahariEiJ_G0025845) #27	Nkx2-4 (MGP_PahariEiJ_G0025844) #28	Xrn2 (MGP_PahariEiJ_G0025843) #29	Kiz (MGP_PahariEiJ_G0025842) #30	Ralgapa2 (MGP_PahariEiJ_G0025841) #31	Insm1 (MGP_PahariEiJ_G0025840) #32	Cfap61 (MGP_PahariEiJ_G0025839) #33	Crnkl1 (MGP_PahariEiJ_G0025838) #34	Naa20 (MGP_PahariEiJ_G0025837) #35	Rin2 (MGP_PahariEiJ_G0025836) #36	MGP_PahariEiJ_G0025835 #37
Mus_A	ANCESTRAL SPECIES		ENSGT00950000183147.B #9	ENSGT00860000135980 #8	ENSGT00940000154755.c.b.a #10	ENSGT00940000154755.c.a #11	ENSGT00940000161877.c.a #12	ENSGT00940000161877.c.b ##12	ENSGT00940000163249 #13	ENSGT00940000162294 #14	ENSGT00940000162636.A #15	ENSGT00940000162636.B #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #25	ENSGT00940000159137 #26	ENSGT00940000159727 #27	ENSGT00940000162247 #28	ENSGT00670000098098 #29	ENSGT00970000195442	ENSGT00390000010121 #30	ENSGT00950000183139.A #31	ENSGT00940000162552 #32	ENSGT00390000004987 #33	ENSGT00550000074931.m #34	ENSGT00550000075046 #35	ENSGT00940000154866.B #36
Mus_B	ANCESTRAL SPECIES	1	ENSGT00860000135980 #8	ENSGT00940000154755.c.b.a #10	ENSGT00940000172008	ENSGT00940000154755.c.a #11	ENSGT00940000161877.c.a #12	ENSGT00940000161877.c.b ##12	ENSGT00940000163249 #13	ENSGT00940000162294 #14	ENSGT00940000162636.A #15	ENSGT00940000162636.B #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #25	ENSGT00940000159137 #26	ENSGT00940000159727 #27	ENSGT00940000162247 #28	ENSGT00670000098098 #29	ENSGT00970000195442	ENSGT00390000010121 #30	ENSGT00950000183139.A #31	ENSGT00940000162552 #32	ENSGT00390000004987 #33	ENSGT00550000074931.m #34	ENSGT00550000075046 #35	ENSGT00940000154866.B #36
Mouse	MODERN SPECIES	11	Syndig1 (ENSMUSG00000074736) #9	Cst10 (ENSMUSG00000033156) #10	Gm1330 (ENSMUSG00000063507)	Cst3 (ENSMUSG00000027447) #11	Cstdc2 (ENSMUSG00000027446) #12	Cst9 (ENSMUSG00000027445) ##12	Cst13 (ENSMUSG00000036924) #13	Cst8 (ENSMUSG00000027442) #14	Cst12 (ENSMUSG00000027443) #15	Cstdc1 (ENSMUSG00000027444) #16	Cst11 (ENSMUSG00000036958) #17	Cstl1 (ENSMUSG00000055177) #18	Napb (ENSMUSG00000027438) #19	Gzf1 (ENSMUSG00000027439) #20	Nxt1 (ENSMUSG00000036992) #21	Cd93 (ENSMUSG00000027435) #22	Thbd (ENSMUSG00000074743) #23	Sstr4 (ENSMUSG00000037014) #24	Foxa2 (ENSMUSG00000037025) #25	Pax1 (ENSMUSG00000037034) #26	Nkx2-2 (ENSMUSG00000027434) #27	Nkx2-4 (ENSMUSG00000054160) #28	Xrn2 (ENSMUSG00000027433) #29	Kiz (ENSMUSG00000074749) #30	Ralgapa2 (ENSMUSG00000037110) #31	Insm1 (ENSMUSG00000068154) #32	Cfap61 (ENSMUSG00000037143) #33	Crnkl1 (ENSMUSG00000001767) #34	Naa20 (ENSMUSG00000002728) #35	Rin2 (ENSMUSG00000001768) #36	Slc24a3 (ENSMUSG00000063873) #37
Mus_C	ANCESTRAL SPECIES		ENSGT00860000135980 #8	ENSGT00940000154755.c.b.a #10	ENSGT00940000172008	ENSGT00940000154755.c.a #11	ENSGT00940000161877.c.a #12	ENSGT00940000161877.c.b ##12	ENSGT00940000163249 #13	ENSGT00940000162294 #14	ENSGT00940000162636.A #15	ENSGT00940000162636.B #16	ENSGT00910000144356 #17	ENSGT00900000141212 #18	ENSGT00390000005826.a.b #19	ENSGT00870000136554 #20	ENSGT00940000162041 #21	ENSGT00940000156996 #22	ENSGT00940000163276 #23	ENSGT00940000156819.a.a #24	ENSGT00940000155999 #25	ENSGT00940000159137 #26	ENSGT00940000159727 #27	ENSGT00940000162247 #28	ENSGT00670000098098 #29	ENSGT00970000195442	ENSGT00390000010121 #30	ENSGT00950000183139.A #31	ENSGT00940000162552 #32	ENSGT00390000004987 #33	ENSGT00550000074931.m #34	ENSGT00550000075046 #35	ENSGT00940000154866.B #36
spretus	MODERN SPECIES	11	Syndig1 (MGP_SPRETEiJ_G0025340) #9	Cst10 (MGP_SPRETEiJ_G0025339) #10	MGP_SPRETEiJ_G0025338	Cst3 (MGP_SPRETEiJ_G0025337) #11	Cstdc2 (MGP_SPRETEiJ_G0025336) #12	Cst9 (MGP_SPRETEiJ_G0025335) ##12	Cst13 (MGP_SPRETEiJ_G0025334) #13	Cst8 (MGP_SPRETEiJ_G0025333) #14	Cst12 (MGP_SPRETEiJ_G0025332) #15	Cstdc1 (MGP_SPRETEiJ_G0025331) #16	Cst11 (MGP_SPRETEiJ_G0025330) #17	Cstl1 (MGP_SPRETEiJ_G0025329) #18	Napb (MGP_SPRETEiJ_G0025328) #19	Gzf1 (MGP_SPRETEiJ_G0025327) #20	Nxt1 (MGP_SPRETEiJ_G0025326) #21	Cd93 (MGP_SPRETEiJ_G0025325) #22	Thbd (MGP_SPRETEiJ_G0025324) #23	Sstr4 (MGP_SPRETEiJ_G0025323) #24	Foxa2 (MGP_SPRETEiJ_G0025322) #25	Pax1 (MGP_SPRETEiJ_G0025321) #26	Nkx2-2 (MGP_SPRETEiJ_G0025320) #27	Nkx2-4 (MGP_SPRETEiJ_G0025319) #28	Xrn2 (MGP_SPRETEiJ_G0025318) #29	MGP_SPRETEiJ_G0025317	Kiz (MGP_SPRETEiJ_G0025316) #30	Ralgapa2 (MGP_SPRETEiJ_G0025315) #31	Insm1 (MGP_SPRETEiJ_G0025314) #32	Cfap61 (MGP_SPRETEiJ_G0025313) #33	Crnkl1 (MGP_SPRETEiJ_G0025312) #34	Naa20 (MGP_SPRETEiJ_G0025311) #35	Rin2 (MGP_SPRETEiJ_G0025310) #36
Steppe mouse	MODERN SPECIES	41			Cst3 (ENSMSIG00000003295) #11	Cstdc2 (ENSMSIG00000003283) #12	Cst9 (ENSMSIG00000003261) ##12	Cst13 (ENSMSIG00000003223) #13	Cst8 (ENSMSIG00000003194) #14	Cst12 (ENSMSIG00000003169) #15	Cstdc1 (ENSMSIG00000003153) #16	Cst11 (ENSMSIG00000003137) #17	Cstl1 (ENSMSIG00000003118) #18	Napb (ENSMSIG00000003094) #19	Gzf1 (ENSMSIG00000003080) #20	Nxt1 (ENSMSIG00000003067) #21	ENSMSIG00000003019	Cd93 (ENSMSIG00000002996) #22	Thbd (ENSMSIG00000002989) #23	Sstr4 (ENSMSIG00000002973) #24	Foxa2 (ENSMSIG00000002945) #25
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024422 #8	Syndig1 (MGP_CAROLIEiJ_G0024421) #9	Cst10 (MGP_CAROLIEiJ_G0024420) #10	Cst3 (MGP_CAROLIEiJ_G0024419) #11	Cstdc2 (MGP_CAROLIEiJ_G0024418) #12	Cst9 (MGP_CAROLIEiJ_G0024417) ##12	Cst13 (MGP_CAROLIEiJ_G0024416) #13	Cst8 (MGP_CAROLIEiJ_G0024415) #14	Cst12 (MGP_CAROLIEiJ_G0024414) #15	Cstdc1 (MGP_CAROLIEiJ_G0024413) #16	Cst11 (MGP_CAROLIEiJ_G0024412) #17	Cstl1 (MGP_CAROLIEiJ_G0024411) #18	Napb (MGP_CAROLIEiJ_G0024410) #19	Gzf1 (MGP_CAROLIEiJ_G0024409) #20	Nxt1 (MGP_CAROLIEiJ_G0024408) #21	Cd93 (MGP_CAROLIEiJ_G0024407) #22	Thbd (MGP_CAROLIEiJ_G0024406) #23	Sstr4 (MGP_CAROLIEiJ_G0024405) #24	Foxa2 (MGP_CAROLIEiJ_G0024404) #25	Pax1 (MGP_CAROLIEiJ_G0024403) #26	Nkx2-2 (MGP_CAROLIEiJ_G0024402) #27	Nkx2-4 (MGP_CAROLIEiJ_G0024401) #28	Xrn2 (MGP_CAROLIEiJ_G0024400) #29	MGP_CAROLIEiJ_G0024399	Kiz (MGP_CAROLIEiJ_G0024398) #30	Ralgapa2 (MGP_CAROLIEiJ_G0024397) #31	Insm1 (MGP_CAROLIEiJ_G0024396) #32	Cfap61 (MGP_CAROLIEiJ_G0024395) #33	Crnkl1 (MGP_CAROLIEiJ_G0024394) #34	Naa20 (MGP_CAROLIEiJ_G0024393) #35	Rin2 (MGP_CAROLIEiJ_G0024392) #36
Rat	MODERN SPECIES	13	Fth1-ps5 (ENSRNOG00000033100)	Andpro (ENSRNOG00000031840) ##10	AABR07054186.1 (ENSRNOG00000032769)	Cst3 (ENSRNOG00000005195) #11	Cstdc2 (ENSRNOG00000005178) #12	Cst9l (ENSRNOG00000005162) ##12	Cst13 (ENSRNOG00000005103) #13	Cst8 (ENSRNOG00000004989) #14	Cst12 (ENSRNOG00000004946) #15	LOC257643 (ENSRNOG00000004858) #16	Cst11 (ENSRNOG00000004808) #17	Cstl1 (ENSRNOG00000004779) #18	Napb (ENSRNOG00000004753) #19	Gzf1 (ENSRNOG00000004735) #20	Nxt1 (ENSRNOG00000004700) #21	Cd93 (ENSRNOG00000024799) #22	Thbd (ENSRNOG00000004687) #23	Sstr4 (ENSRNOG00000004641) #24	Foxa2 (ENSRNOG00000013133) #25	Pax1 (ENSRNOG00000024882) #26	Nkx2-2 (ENSRNOG00000012728) #27	Nkx2-4 (ENSRNOG00000012647) #28	Xrn2 (ENSRNOG00000011785) #29	Kiz (ENSRNOG00000025141) #30	ENSRNOG00000070752	Ralgapa2 (ENSRNOG00000036964) #31	Insm1 (ENSRNOG00000068937) #32	AABR07054096.1 (ENSRNOG00000011028) #33	Crnkl1 (ENSRNOG00000010587) #34	Naa20 (ENSRNOG00000010523) #35	Rin2 (ENSRNOG00000010131) #36